##gff-version 3
#!gff-spec-version 1.21
#!processor NCBI annotwriter
#!genome-build ASM2300v1
#!genome-build-accession NCBI_Assembly:GCF_000023005.1
#!annotation-date 01/08/2025 17:22:04
#!annotation-source NCBI RefSeq GCF_000023005.1-RS_2025_01_08
##sequence-region NC_012633.1 1 1278540
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=347255
NC_012633.1	RefSeq	region	1	1278540	.	+	.	ID=NC_012633.1:1..1278540;Dbxref=taxon:347255;Is_circular=true;Name=ANONYMOUS;country=Ethiopia;gbkey=Src;genome=chromosome;mol_type=genomic DNA;nat-host=Amblyomma variegatum (cattle tick);strain=ESF-5
NC_012633.1	RefSeq	gene	1	822	.	+	.	ID=gene-RAF_RS00005;Name=RAF_RS00005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00005;old_locus_tag=RAF_ORF0001
NC_012633.1	Protein Homology	CDS	1	822	.	+	0	ID=cds-WP_012719301.1;Parent=gene-RAF_RS00005;Dbxref=GenBank:WP_012719301.1;Name=WP_012719301.1;Ontology_term=GO:0006468,GO:0006470,GO:0004674,GO:0005524,GO:0016776;gbkey=CDS;go_function=protein serine/threonine kinase activity|0004674||IEA,ATP binding|0005524||IEA,phosphotransferase activity%2C phosphate group as acceptor|0016776||IEA;go_process=protein phosphorylation|0006468||IEA,protein dephosphorylation|0006470||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190478.1;locus_tag=RAF_RS00005;product=pyruvate%2C water dikinase regulatory protein;protein_id=WP_012719301.1;transl_table=11
NC_012633.1	RefSeq	gene	1040	1357	.	+	.	ID=gene-RAF_RS00010;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=RAF_RS00010;old_locus_tag=RAF_ORF0002
NC_012633.1	Protein Homology	CDS	1040	1357	.	+	0	ID=cds-WP_004997015.1;Parent=gene-RAF_RS00010;Dbxref=GenBank:WP_004997015.1;Name=WP_004997015.1;Ontology_term=GO:0015035;gbkey=CDS;gene=trxA;go_function=protein-disulfide reductase activity|0015035||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997015.1;locus_tag=RAF_RS00010;product=thioredoxin;protein_id=WP_004997015.1;transl_table=11
NC_012633.1	RefSeq	gene	1368	2117	.	+	.	ID=gene-RAF_RS00015;Name=RAF_RS00015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00015;old_locus_tag=RAF_ORF0003
NC_012633.1	Protein Homology	CDS	1368	2117	.	+	0	ID=cds-WP_012719302.1;Parent=gene-RAF_RS00015;Dbxref=GenBank:WP_012719302.1;Name=WP_012719302.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010420791.1;locus_tag=RAF_RS00015;product=ABC transporter ATP-binding protein;protein_id=WP_012719302.1;transl_table=11
NC_012633.1	RefSeq	gene	2118	2894	.	+	.	ID=gene-RAF_RS00020;Name=RAF_RS00020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00020;old_locus_tag=RAF_ORF0004
NC_012633.1	Protein Homology	CDS	2118	2894	.	+	0	ID=cds-WP_004997009.1;Parent=gene-RAF_RS00020;Dbxref=GenBank:WP_004997009.1;Name=WP_004997009.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736333.1;locus_tag=RAF_RS00020;product=ABC transporter permease;protein_id=WP_004997009.1;transl_table=11
NC_012633.1	RefSeq	gene	2891	5992	.	+	.	ID=gene-RAF_RS00025;Name=RAF_RS00025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00025;old_locus_tag=RAF_ORF0005
NC_012633.1	Protein Homology	CDS	2891	5992	.	+	0	ID=cds-WP_012719303.1;Parent=gene-RAF_RS00025;Dbxref=GenBank:WP_012719303.1;Name=WP_012719303.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997004.1;locus_tag=RAF_RS00025;product=FAD-dependent oxidoreductase;protein_id=WP_012719303.1;transl_table=11
NC_012633.1	RefSeq	gene	6036	6275	.	-	.	ID=gene-RAF_RS00030;Name=RAF_RS00030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00030;old_locus_tag=RAF_ORF0006
NC_012633.1	Protein Homology	CDS	6036	6275	.	-	0	ID=cds-WP_041471780.1;Parent=gene-RAF_RS00030;Dbxref=GenBank:WP_041471780.1;Name=WP_041471780.1;Ontology_term=GO:0006402,GO:0016075,GO:0003677,GO:0003723,GO:0004521;gbkey=CDS;go_function=DNA binding|0003677||IEA,RNA binding|0003723||IEA,RNA endonuclease activity|0004521||IEA;go_process=mRNA catabolic process|0006402||IEA,rRNA catabolic process|0016075||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736335.1;locus_tag=RAF_RS00030;product=type II toxin-antitoxin system PemK/MazF family toxin;protein_id=WP_041471780.1;transl_table=11
NC_012633.1	RefSeq	gene	6300	6581	.	-	.	ID=gene-RAF_RS00035;Name=RAF_RS00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00035;old_locus_tag=RAF_ORF0007
NC_012633.1	Protein Homology	CDS	6300	6581	.	-	0	ID=cds-WP_012719305.1;Parent=gene-RAF_RS00035;Dbxref=GenBank:WP_012719305.1;Name=WP_012719305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976695.1;locus_tag=RAF_RS00035;product=CopG family ribbon-helix-helix protein;protein_id=WP_012719305.1;transl_table=11
NC_012633.1	RefSeq	gene	6612	7406	.	-	.	ID=gene-RAF_RS00040;Name=lpxA;gbkey=Gene;gene=lpxA;gene_biotype=protein_coding;locus_tag=RAF_RS00040;old_locus_tag=RAF_ORF0008
NC_012633.1	Protein Homology	CDS	6612	7406	.	-	0	ID=cds-WP_004997001.1;Parent=gene-RAF_RS00040;Dbxref=GenBank:WP_004997001.1;Name=WP_004997001.1;Ontology_term=GO:0009245,GO:0008780;gbkey=CDS;gene=lpxA;go_function=acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity|0008780||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596702.1;locus_tag=RAF_RS00040;product=acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase;protein_id=WP_004997001.1;transl_table=11
NC_012633.1	RefSeq	gene	7414	7851	.	-	.	ID=gene-RAF_RS00045;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=RAF_RS00045;old_locus_tag=RAF_ORF0009
NC_012633.1	Protein Homology	CDS	7414	7851	.	-	0	ID=cds-WP_012719306.1;Parent=gene-RAF_RS00045;Dbxref=GenBank:WP_012719306.1;Name=WP_012719306.1;gbkey=CDS;gene=fabZ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976697.1;locus_tag=RAF_RS00045;product=3-hydroxyacyl-ACP dehydratase FabZ;protein_id=WP_012719306.1;transl_table=11
NC_012633.1	RefSeq	gene	8047	9087	.	-	.	ID=gene-RAF_RS00050;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=RAF_RS00050;old_locus_tag=RAF_ORF0010
NC_012633.1	Protein Homology	CDS	8047	9087	.	-	0	ID=cds-WP_012719307.1;Parent=gene-RAF_RS00050;Dbxref=GenBank:WP_012719307.1;Name=WP_012719307.1;Ontology_term=GO:0009245,GO:0016410;gbkey=CDS;gene=lpxD;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596698.1;locus_tag=RAF_RS00050;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_012719307.1;transl_table=11
NC_012633.1	RefSeq	gene	9595	9670	.	-	.	ID=gene-RAF_RS00055;Name=RAF_RS00055;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS00055;old_locus_tag=RAF_RNA01
NC_012633.1	tRNAscan-SE	tRNA	9595	9670	.	-	.	ID=rna-RAF_RS00055;Parent=gene-RAF_RS00055;anticodon=(pos:complement(9635..9637));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS00055;product=tRNA-Phe
NC_012633.1	tRNAscan-SE	exon	9595	9670	.	-	.	ID=exon-RAF_RS00055-1;Parent=rna-RAF_RS00055;anticodon=(pos:complement(9635..9637));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS00055;product=tRNA-Phe
NC_012633.1	RefSeq	gene	9944	10939	.	+	.	ID=gene-RAF_RS00060;Name=dusB;gbkey=Gene;gene=dusB;gene_biotype=protein_coding;locus_tag=RAF_RS00060;old_locus_tag=RAF_ORF0011
NC_012633.1	Protein Homology	CDS	9944	10939	.	+	0	ID=cds-WP_041471988.1;Parent=gene-RAF_RS00060;Dbxref=GenBank:WP_041471988.1;Name=WP_041471988.1;Ontology_term=GO:0008033,GO:0017150,GO:0050660;gbkey=CDS;gene=dusB;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443483.1;locus_tag=RAF_RS00060;product=tRNA dihydrouridine synthase DusB;protein_id=WP_041471988.1;transl_table=11
NC_012633.1	RefSeq	gene	10924	11886	.	+	.	ID=gene-RAF_RS00065;Name=RAF_RS00065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00065
NC_012633.1	Protein Homology	CDS	10924	11886	.	+	0	ID=cds-WP_148206956.1;Parent=gene-RAF_RS00065;Dbxref=GenBank:WP_148206956.1;Name=WP_148206956.1;Ontology_term=GO:0005975,GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014412024.1;locus_tag=RAF_RS00065;product=polysaccharide deacetylase family protein;protein_id=WP_148206956.1;transl_table=11
NC_012633.1	RefSeq	gene	11945	12127	.	+	.	ID=gene-RAF_RS00070;Name=RAF_RS00070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00070
NC_012633.1	GeneMarkS-2+	CDS	11945	12127	.	+	0	ID=cds-WP_041471782.1;Parent=gene-RAF_RS00070;Dbxref=GenBank:WP_041471782.1;Name=WP_041471782.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS00070;product=hypothetical protein;protein_id=WP_041471782.1;transl_table=11
NC_012633.1	RefSeq	gene	12135	12662	.	-	.	ID=gene-RAF_RS00075;Name=tsaE;gbkey=Gene;gene=tsaE;gene_biotype=protein_coding;locus_tag=RAF_RS00075;old_locus_tag=RAF_ORF0013
NC_012633.1	Protein Homology	CDS	12135	12662	.	-	0	ID=cds-WP_004996990.1;Parent=gene-RAF_RS00075;Dbxref=GenBank:WP_004996990.1;Name=WP_004996990.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaE;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016769800.1;locus_tag=RAF_RS00075;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;protein_id=WP_004996990.1;transl_table=11
NC_012633.1	RefSeq	gene	12650	13603	.	-	.	ID=gene-RAF_RS00080;Name=RAF_RS00080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00080;old_locus_tag=RAF_ORF0014
NC_012633.1	Protein Homology	CDS	12650	13603	.	-	0	ID=cds-WP_012719310.1;Parent=gene-RAF_RS00080;Dbxref=GenBank:WP_012719310.1;Name=WP_012719310.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945384.1;locus_tag=RAF_RS00080;product=metal ABC transporter solute-binding protein%2C Zn/Mn family;protein_id=WP_012719310.1;transl_table=11
NC_012633.1	RefSeq	gene	13600	14910	.	-	.	ID=gene-RAF_RS00085;Name=RAF_RS00085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00085;old_locus_tag=RAF_ORF0015
NC_012633.1	Protein Homology	CDS	13600	14910	.	-	0	ID=cds-WP_012719311.1;Parent=gene-RAF_RS00085;Dbxref=GenBank:WP_012719311.1;Name=WP_012719311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719311.1;locus_tag=RAF_RS00085;product=palindromic element RPE1 domain-containing protein;protein_id=WP_012719311.1;transl_table=11
NC_012633.1	RefSeq	gene	15399	15605	.	-	.	ID=gene-RAF_RS00090;Name=RAF_RS00090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00090
NC_012633.1	Protein Homology	CDS	15399	15605	.	-	0	ID=cds-WP_041471783.1;Parent=gene-RAF_RS00090;Dbxref=GenBank:WP_041471783.1;Name=WP_041471783.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362268.1;locus_tag=RAF_RS00090;product=hypothetical protein;protein_id=WP_041471783.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	15708	16435	.	-	.	ID=gene-RAF_RS00095;Name=RAF_RS00095;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00095;old_locus_tag=RAF_ORF0016;pseudo=true
NC_012633.1	Protein Homology	CDS	15708	16435	.	-	0	ID=cds-RAF_RS00095;Parent=gene-RAF_RS00095;Note=frameshifted;Ontology_term=GO:0030420,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=establishment of competence for transformation|0030420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830588.1;locus_tag=RAF_RS00095;product=ComEC/Rec2 family competence protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	16818	16958	.	-	.	ID=gene-RAF_RS09140;Name=RAF_RS09140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09140
NC_012633.1	Protein Homology	CDS	16818	16958	.	-	0	ID=cds-WP_041471784.1;Parent=gene-RAF_RS09140;Dbxref=GenBank:WP_041471784.1;Name=WP_041471784.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410261.1;locus_tag=RAF_RS09140;product=hypothetical protein;protein_id=WP_041471784.1;transl_table=11
NC_012633.1	RefSeq	gene	17347	22914	.	+	.	ID=gene-RAF_RS00110;Name=RAF_RS00110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00110;old_locus_tag=RAF_ORF0019
NC_012633.1	Protein Homology	CDS	17347	22914	.	+	0	ID=cds-WP_012719313.1;Parent=gene-RAF_RS00110;Dbxref=GenBank:WP_012719313.1;Name=WP_012719313.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012262176.1;locus_tag=RAF_RS00110;product=autotransporter domain-containing protein;protein_id=WP_012719313.1;transl_table=11
NC_012633.1	RefSeq	gene	23024	23098	.	+	.	ID=gene-RAF_RS00115;Name=RAF_RS00115;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS00115;old_locus_tag=RAF_RNA02
NC_012633.1	tRNAscan-SE	tRNA	23024	23098	.	+	.	ID=rna-RAF_RS00115;Parent=gene-RAF_RS00115;anticodon=(pos:23057..23059);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS00115;product=tRNA-Glu
NC_012633.1	tRNAscan-SE	exon	23024	23098	.	+	.	ID=exon-RAF_RS00115-1;Parent=rna-RAF_RS00115;anticodon=(pos:23057..23059);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS00115;product=tRNA-Glu
NC_012633.1	RefSeq	gene	24260	24886	.	+	.	ID=gene-RAF_RS00125;Name=RAF_RS00125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00125;old_locus_tag=RAF_ORF0021
NC_012633.1	Protein Homology	CDS	24260	24886	.	+	0	ID=cds-WP_010976709.1;Parent=gene-RAF_RS00125;Dbxref=GenBank:WP_010976709.1;Name=WP_010976709.1;Ontology_term=GO:0043531;gbkey=CDS;go_function=ADP binding|0043531||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410265.1;locus_tag=RAF_RS00125;product=NB-ARC domain-containing protein;protein_id=WP_010976709.1;transl_table=11
NC_012633.1	RefSeq	gene	25343	25546	.	+	.	ID=gene-RAF_RS00130;Name=RAF_RS00130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00130
NC_012633.1	Protein Homology	CDS	25343	25546	.	+	0	ID=cds-WP_041471785.1;Parent=gene-RAF_RS00130;Dbxref=GenBank:WP_041471785.1;Name=WP_041471785.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976710.1;locus_tag=RAF_RS00130;product=tetratricopeptide repeat protein;protein_id=WP_041471785.1;transl_table=11
NC_012633.1	RefSeq	gene	25889	26092	.	+	.	ID=gene-RAF_RS00135;Name=RAF_RS00135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00135
NC_012633.1	Protein Homology	CDS	25889	26092	.	+	0	ID=cds-WP_041471786.1;Parent=gene-RAF_RS00135;Dbxref=GenBank:WP_041471786.1;Name=WP_041471786.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443495.1;locus_tag=RAF_RS00135;product=hypothetical protein;protein_id=WP_041471786.1;transl_table=11
NC_012633.1	RefSeq	gene	26098	26592	.	-	.	ID=gene-RAF_RS00140;Name=RAF_RS00140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00140;old_locus_tag=RAF_ORF0022
NC_012633.1	Protein Homology	CDS	26098	26592	.	-	0	ID=cds-WP_010976712.1;Parent=gene-RAF_RS00140;Dbxref=GenBank:WP_010976712.1;Name=WP_010976712.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443496.1;locus_tag=RAF_RS00140;product=F0F1 ATP synthase subunit B;protein_id=WP_010976712.1;transl_table=11
NC_012633.1	RefSeq	gene	26592	27065	.	-	.	ID=gene-RAF_RS00145;Name=RAF_RS00145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00145;old_locus_tag=RAF_ORF0023
NC_012633.1	Protein Homology	CDS	26592	27065	.	-	0	ID=cds-WP_004996956.1;Parent=gene-RAF_RS00145;Dbxref=GenBank:WP_004996956.1;Name=WP_004996956.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443497.1;locus_tag=RAF_RS00145;product=F0F1 ATP synthase subunit B';protein_id=WP_004996956.1;transl_table=11
NC_012633.1	RefSeq	gene	27084	27308	.	-	.	ID=gene-RAF_RS00150;Name=RAF_RS00150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00150;old_locus_tag=RAF_ORF0024
NC_012633.1	Protein Homology	CDS	27084	27308	.	-	0	ID=cds-WP_004996954.1;Parent=gene-RAF_RS00150;Dbxref=GenBank:WP_004996954.1;Name=WP_004996954.1;Ontology_term=GO:0015986,GO:0015078,GO:0045263;gbkey=CDS;go_component=proton-transporting ATP synthase complex%2C coupling factor F(o)|0045263||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010420727.1;locus_tag=RAF_RS00150;product=F0F1 ATP synthase subunit C;protein_id=WP_004996954.1;transl_table=11
NC_012633.1	RefSeq	gene	27369	27512	.	+	.	ID=gene-RAF_RS07140;Name=RAF_RS07140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07140
NC_012633.1	Protein Homology	CDS	27369	27512	.	+	0	ID=cds-WP_083762071.1;Parent=gene-RAF_RS07140;Dbxref=GenBank:WP_083762071.1;Name=WP_083762071.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010421530.1;locus_tag=RAF_RS07140;product=palindromic element RPE1 domain-containing protein;protein_id=WP_083762071.1;transl_table=11
NC_012633.1	RefSeq	gene	27504	28232	.	-	.	ID=gene-RAF_RS00155;Name=RAF_RS00155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00155;old_locus_tag=RAF_ORF0025
NC_012633.1	Protein Homology	CDS	27504	28232	.	-	0	ID=cds-WP_012719315.1;Parent=gene-RAF_RS00155;Dbxref=GenBank:WP_012719315.1;Name=WP_012719315.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596667.1;locus_tag=RAF_RS00155;product=F0F1 ATP synthase subunit A;protein_id=WP_012719315.1;transl_table=11
NC_012633.1	RefSeq	gene	28237	28500	.	-	.	ID=gene-RAF_RS00160;Name=RAF_RS00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00160;old_locus_tag=RAF_ORF0026
NC_012633.1	Protein Homology	CDS	28237	28500	.	-	0	ID=cds-WP_012719316.1;Parent=gene-RAF_RS00160;Dbxref=GenBank:WP_012719316.1;Name=WP_012719316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014391724.1;locus_tag=RAF_RS00160;product=AtpZ/AtpI family protein;protein_id=WP_012719316.1;transl_table=11
NC_012633.1	RefSeq	gene	28611	29444	.	-	.	ID=gene-RAF_RS00165;Name=RAF_RS00165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00165;old_locus_tag=RAF_ORF0027
NC_012633.1	Protein Homology	CDS	28611	29444	.	-	0	ID=cds-WP_012719317.1;Parent=gene-RAF_RS00165;Dbxref=GenBank:WP_012719317.1;Name=WP_012719317.1;Ontology_term=GO:0015036;gbkey=CDS;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362685.1;locus_tag=RAF_RS00165;product=DsbA family protein;protein_id=WP_012719317.1;transl_table=11
NC_012633.1	RefSeq	gene	29608	30129	.	+	.	ID=gene-RAF_RS00170;Name=RAF_RS00170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00170;old_locus_tag=RAF_ORF0028
NC_012633.1	Protein Homology	CDS	29608	30129	.	+	0	ID=cds-WP_012719318.1;Parent=gene-RAF_RS00170;Dbxref=GenBank:WP_012719318.1;Name=WP_012719318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273107.1;locus_tag=RAF_RS00170;product=CarD family transcriptional regulator;protein_id=WP_012719318.1;transl_table=11
NC_012633.1	RefSeq	gene	30376	31980	.	-	.	ID=gene-RAF_RS00175;Name=RAF_RS00175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00175;old_locus_tag=RAF_ORF0029
NC_012633.1	Protein Homology	CDS	30376	31980	.	-	0	ID=cds-WP_004996937.1;Parent=gene-RAF_RS00175;Dbxref=GenBank:WP_004996937.1;Name=WP_004996937.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443502.1;locus_tag=RAF_RS00175;product=methyltransferase regulatory domain-containing protein;protein_id=WP_004996937.1;transl_table=11
NC_012633.1	RefSeq	gene	32406	33488	.	-	.	ID=gene-RAF_RS00180;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=RAF_RS00180;old_locus_tag=RAF_ORF0030
NC_012633.1	Protein Homology	CDS	32406	33488	.	-	0	ID=cds-WP_012719319.1;Parent=gene-RAF_RS00180;Dbxref=GenBank:WP_012719319.1;Name=WP_012719319.1;Note=All proteins in this family for which functions are known are DNA-binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair.;Ontology_term=GO:0006260,GO:0006281,GO:0006310,GO:0009432,GO:0003697,GO:0005524;gbkey=CDS;gene=recF;go_function=single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA,DNA recombination|0006310||IEA,SOS response|0009432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151492.1;locus_tag=RAF_RS00180;product=DNA replication/repair protein RecF;protein_id=WP_012719319.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	33512	33806	.	-	.	ID=gene-RAF_RS07155;Name=RAF_RS07155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS07155;pseudo=true
NC_012633.1	Protein Homology	CDS	33512	33806	.	-	0	ID=cds-RAF_RS07155;Parent=gene-RAF_RS07155;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150262.1;locus_tag=RAF_RS07155;product=iron-containing redox enzyme family protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	33790	34068	.	-	.	ID=gene-RAF_RS10480;Name=RAF_RS10480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10480
NC_012633.1	Protein Homology	CDS	33790	34068	.	-	0	ID=cds-WP_081463643.1;Parent=gene-RAF_RS10480;Dbxref=GenBank:WP_081463643.1;Name=WP_081463643.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025871.5;locus_tag=RAF_RS10480;product=iron-containing redox enzyme family protein;protein_id=WP_081463643.1;transl_table=11
NC_012633.1	RefSeq	gene	34147	34641	.	-	.	ID=gene-RAF_RS00185;Name=RAF_RS00185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00185;old_locus_tag=RAF_ORF0031
NC_012633.1	Protein Homology	CDS	34147	34641	.	-	0	ID=cds-WP_004996932.1;Parent=gene-RAF_RS00185;Dbxref=GenBank:WP_004996932.1;Name=WP_004996932.1;Ontology_term=GO:0046654,GO:0004146,GO:0005542,GO:0050661;gbkey=CDS;go_function=dihydrofolate reductase activity|0004146||IEA,folic acid binding|0005542||IEA,NADP binding|0050661||IEA;go_process=tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014013756.1;locus_tag=RAF_RS00185;product=dihydrofolate reductase;protein_id=WP_004996932.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	34638	35319	.	-	.	ID=gene-RAF_RS10230;Name=folP;gbkey=Gene;gene=folP;gene_biotype=pseudogene;locus_tag=RAF_RS10230;pseudo=true
NC_012633.1	Protein Homology	CDS	34638	35319	.	-	0	ID=cds-RAF_RS10230;Parent=gene-RAF_RS10230;Note=frameshifted;Ontology_term=GO:0009396,GO:0004156;gbkey=CDS;gene=folP;go_function=dihydropteroate synthase activity|0004156||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: protein motif:HMM:NF013007.5;locus_tag=RAF_RS10230;product=dihydropteroate synthase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	35315	35737	.	-	.	ID=gene-RAF_RS10235;Name=RAF_RS10235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10235
NC_012633.1	Protein Homology	CDS	35315	35737	.	-	0	ID=cds-WP_041471787.1;Parent=gene-RAF_RS10235;Dbxref=GenBank:WP_041471787.1;Name=WP_041471787.1;Ontology_term=GO:0009396,GO:0003848;gbkey=CDS;go_function=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity|0003848||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996922.1;locus_tag=RAF_RS10235;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=WP_041471787.1;transl_table=11
NC_012633.1	RefSeq	gene	35718	35936	.	-	.	ID=gene-RAF_RS00205;Name=RAF_RS00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00205
NC_012633.1	Protein Homology	CDS	35718	35936	.	-	0	ID=cds-WP_014410280.1;Parent=gene-RAF_RS00205;Dbxref=GenBank:WP_014410280.1;Name=WP_014410280.1;Ontology_term=GO:0009396,GO:0003848;gbkey=CDS;go_function=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity|0003848||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976725.1;locus_tag=RAF_RS00205;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=WP_014410280.1;transl_table=11
NC_012633.1	RefSeq	gene	36034	36300	.	-	.	ID=gene-RAF_RS07170;Name=RAF_RS07170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07170
NC_012633.1	Protein Homology	CDS	36034	36300	.	-	0	ID=cds-WP_327203454.1;Parent=gene-RAF_RS07170;Dbxref=GenBank:WP_327203454.1;Name=WP_327203454.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:TIGR00526.1;locus_tag=RAF_RS07170;product=dihydroneopterin aldolase;protein_id=WP_327203454.1;transl_table=11
NC_012633.1	RefSeq	gene	36402	37070	.	-	.	ID=gene-RAF_RS00210;Name=RAF_RS00210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00210;old_locus_tag=RAF_ORF0035
NC_012633.1	Protein Homology	CDS	36402	37070	.	-	0	ID=cds-WP_012719320.1;Parent=gene-RAF_RS00210;Dbxref=GenBank:WP_012719320.1;Name=WP_012719320.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976726.1;locus_tag=RAF_RS00210;product=DUF5394 family protein;protein_id=WP_012719320.1;transl_table=11
NC_012633.1	RefSeq	gene	37620	38039	.	-	.	ID=gene-RAF_RS00220;Name=RAF_RS00220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00220
NC_012633.1	Protein Homology	CDS	37620	38039	.	-	0	ID=cds-WP_041471788.1;Parent=gene-RAF_RS00220;Dbxref=GenBank:WP_041471788.1;Name=WP_041471788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150268.1;locus_tag=RAF_RS00220;product=hypothetical protein;protein_id=WP_041471788.1;transl_table=11
NC_012633.1	RefSeq	gene	38438	38707	.	-	.	ID=gene-RAF_RS00225;Name=RAF_RS00225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00225
NC_012633.1	Protein Homology	CDS	38438	38707	.	-	0	ID=cds-WP_041471789.1;Parent=gene-RAF_RS00225;Dbxref=GenBank:WP_041471789.1;Name=WP_041471789.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976728.1;locus_tag=RAF_RS00225;product=hypothetical protein;protein_id=WP_041471789.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	39932	40528	.	+	.	ID=gene-RAF_RS00230;Name=RAF_RS00230;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00230;old_locus_tag=RAF_ORF0040;pseudo=true
NC_012633.1	Protein Homology	CDS	39932	40528	.	+	0	ID=cds-RAF_RS00230;Parent=gene-RAF_RS00230;Note=internal stop;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917337.1;locus_tag=RAF_RS00230;product=SCO family protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	40539	41108	.	-	.	ID=gene-RAF_RS00235;Name=RAF_RS00235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00235;old_locus_tag=RAF_ORF0041
NC_012633.1	Protein Homology	CDS	40539	41108	.	-	0	ID=cds-WP_012719323.1;Parent=gene-RAF_RS00235;Dbxref=GenBank:WP_012719323.1;Name=WP_012719323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150274.1;locus_tag=RAF_RS00235;product=YqgE/AlgH family protein;protein_id=WP_012719323.1;transl_table=11
NC_012633.1	RefSeq	gene	41174	41842	.	+	.	ID=gene-RAF_RS00240;Name=RAF_RS00240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00240;old_locus_tag=RAF_ORF0042
NC_012633.1	Protein Homology	CDS	41174	41842	.	+	0	ID=cds-WP_012719324.1;Parent=gene-RAF_RS00240;Dbxref=GenBank:WP_012719324.1;Name=WP_012719324.1;Ontology_term=GO:0009403;gbkey=CDS;go_process=toxin biosynthetic process|0009403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014412047.1;locus_tag=RAF_RS00240;product=CvpA family protein;protein_id=WP_012719324.1;transl_table=11
NC_012633.1	RefSeq	gene	42346	43236	.	+	.	ID=gene-RAF_RS00245;Name=RAF_RS00245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00245;old_locus_tag=RAF_ORF0043
NC_012633.1	Protein Homology	CDS	42346	43236	.	+	0	ID=cds-WP_041471790.1;Parent=gene-RAF_RS00245;Dbxref=GenBank:WP_041471790.1;Name=WP_041471790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410289.1;locus_tag=RAF_RS00245;product=hypothetical protein;protein_id=WP_041471790.1;transl_table=11
NC_012633.1	RefSeq	gene	43193	43552	.	+	.	ID=gene-RAF_RS00250;Name=RAF_RS00250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00250
NC_012633.1	Protein Homology	CDS	43193	43552	.	+	0	ID=cds-WP_014410290.1;Parent=gene-RAF_RS00250;Dbxref=GenBank:WP_014410290.1;Name=WP_014410290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410290.1;locus_tag=RAF_RS00250;product=autotransporter domain-containing protein;protein_id=WP_014410290.1;transl_table=11
NC_012633.1	RefSeq	gene	43816	45138	.	-	.	ID=gene-RAF_RS00255;Name=RAF_RS00255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00255;old_locus_tag=RAF_ORF0045
NC_012633.1	Protein Homology	CDS	43816	45138	.	-	0	ID=cds-WP_010976735.1;Parent=gene-RAF_RS00255;Dbxref=GenBank:WP_010976735.1;Name=WP_010976735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976735.1;locus_tag=RAF_RS00255;product=DUF2748 family protein;protein_id=WP_010976735.1;transl_table=11
NC_012633.1	RefSeq	gene	45148	45672	.	-	.	ID=gene-RAF_RS00260;Name=RAF_RS00260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00260;old_locus_tag=RAF_ORF0046
NC_012633.1	Protein Homology	CDS	45148	45672	.	-	0	ID=cds-WP_012719325.1;Parent=gene-RAF_RS00260;Dbxref=GenBank:WP_012719325.1;Name=WP_012719325.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976736.1;locus_tag=RAF_RS00260;product=hypothetical protein;protein_id=WP_012719325.1;transl_table=11
NC_012633.1	RefSeq	gene	45749	46327	.	-	.	ID=gene-RAF_RS09590;Name=RAF_RS09590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09590;old_locus_tag=RAF_ORF0047
NC_012633.1	Protein Homology	CDS	45749	46327	.	-	0	ID=cds-WP_012719326.1;Parent=gene-RAF_RS09590;Dbxref=GenBank:WP_012719326.1;Name=WP_012719326.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719326.1;locus_tag=RAF_RS09590;product=hypothetical protein;protein_id=WP_012719326.1;transl_table=11
NC_012633.1	RefSeq	gene	46473	46670	.	-	.	ID=gene-RAF_RS00270;Name=RAF_RS00270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00270
NC_012633.1	Protein Homology	CDS	46473	46670	.	-	0	ID=cds-WP_004996895.1;Parent=gene-RAF_RS00270;Dbxref=GenBank:WP_004996895.1;Name=WP_004996895.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014365136.1;locus_tag=RAF_RS00270;product=hypothetical protein;protein_id=WP_004996895.1;transl_table=11
NC_012633.1	RefSeq	gene	47110	47835	.	-	.	ID=gene-RAF_RS00285;Name=RAF_RS00285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00285;old_locus_tag=RAF_ORF0048
NC_012633.1	Protein Homology	CDS	47110	47835	.	-	0	ID=cds-WP_012719327.1;Parent=gene-RAF_RS00285;Dbxref=GenBank:WP_012719327.1;Name=WP_012719327.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190568.1;locus_tag=RAF_RS00285;product=SDR family oxidoreductase;protein_id=WP_012719327.1;transl_table=11
NC_012633.1	RefSeq	gene	47993	48124	.	-	.	ID=gene-RAF_RS10240;Name=RAF_RS10240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10240
NC_012633.1	GeneMarkS-2+	CDS	47993	48124	.	-	0	ID=cds-WP_268738930.1;Parent=gene-RAF_RS10240;Dbxref=GenBank:WP_268738930.1;Name=WP_268738930.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10240;product=hypothetical protein;protein_id=WP_268738930.1;transl_table=11
NC_012633.1	RefSeq	gene	48194	49036	.	-	.	ID=gene-RAF_RS09150;Name=RAF_RS09150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09150
NC_012633.1	Protein Homology	CDS	48194	49036	.	-	0	ID=cds-WP_234943910.1;Parent=gene-RAF_RS09150;Dbxref=GenBank:WP_234943910.1;Name=WP_234943910.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996888.1;locus_tag=RAF_RS09150;product=hypothetical protein;protein_id=WP_234943910.1;transl_table=11
NC_012633.1	RefSeq	gene	49082	49357	.	-	.	ID=gene-RAF_RS00295;Name=RAF_RS00295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00295
NC_012633.1	Protein Homology	CDS	49082	49357	.	-	0	ID=cds-WP_041471792.1;Parent=gene-RAF_RS00295;Dbxref=GenBank:WP_041471792.1;Name=WP_041471792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830597.1;locus_tag=RAF_RS00295;product=hypothetical protein;protein_id=WP_041471792.1;transl_table=11
NC_012633.1	RefSeq	gene	49351	49752	.	-	.	ID=gene-RAF_RS00300;Name=RAF_RS00300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00300
NC_012633.1	Protein Homology	CDS	49351	49752	.	-	0	ID=cds-WP_041471793.1;Parent=gene-RAF_RS00300;Dbxref=GenBank:WP_041471793.1;Name=WP_041471793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976744.1;locus_tag=RAF_RS00300;product=hypothetical protein;protein_id=WP_041471793.1;transl_table=11
NC_012633.1	RefSeq	gene	49865	52438	.	+	.	ID=gene-RAF_RS00305;Name=clpB;gbkey=Gene;gene=clpB;gene_biotype=protein_coding;locus_tag=RAF_RS00305;old_locus_tag=RAF_ORF0052
NC_012633.1	Protein Homology	CDS	49865	52438	.	+	0	ID=cds-WP_012719328.1;Parent=gene-RAF_RS00305;Dbxref=GenBank:WP_012719328.1;Name=WP_012719328.1;Ontology_term=GO:0009408,GO:0042026,GO:0005737;gbkey=CDS;gene=clpB;go_component=cytoplasm|0005737||IEA;go_process=response to heat|0009408||IEA,protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976745.1;locus_tag=RAF_RS00305;product=ATP-dependent chaperone ClpB;protein_id=WP_012719328.1;transl_table=11
NC_012633.1	RefSeq	gene	52622	53113	.	-	.	ID=gene-RAF_RS00310;Name=RAF_RS00310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00310;old_locus_tag=RAF_ORF0053
NC_012633.1	Protein Homology	CDS	52622	53113	.	-	0	ID=cds-WP_012719329.1;Parent=gene-RAF_RS00310;Dbxref=GenBank:WP_012719329.1;Name=WP_012719329.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917346.1;locus_tag=RAF_RS00310;product=DUF5424 family protein;protein_id=WP_012719329.1;transl_table=11
NC_012633.1	RefSeq	gene	53240	54274	.	-	.	ID=gene-RAF_RS00315;Name=tsaD;gbkey=Gene;gene=tsaD;gene_biotype=protein_coding;locus_tag=RAF_RS00315;old_locus_tag=RAF_ORF0054
NC_012633.1	Protein Homology	CDS	53240	54274	.	-	0	ID=cds-WP_012719330.1;Parent=gene-RAF_RS00315;Dbxref=GenBank:WP_012719330.1;Name=WP_012719330.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaD;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410298.1;locus_tag=RAF_RS00315;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;protein_id=WP_012719330.1;transl_table=11
NC_012633.1	RefSeq	gene	54457	55650	.	-	.	ID=gene-RAF_RS00320;Name=RAF_RS00320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00320;old_locus_tag=RAF_ORF0055
NC_012633.1	Protein Homology	CDS	54457	55650	.	-	0	ID=cds-WP_012719331.1;Parent=gene-RAF_RS00320;Dbxref=GenBank:WP_012719331.1;Name=WP_012719331.1;Ontology_term=GO:0006629;gbkey=CDS;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273121.1;locus_tag=RAF_RS00320;product=fatty acid desaturase;protein_id=WP_012719331.1;transl_table=11
NC_012633.1	RefSeq	gene	55798	56109	.	-	.	ID=gene-RAF_RS00325;Name=RAF_RS00325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00325;old_locus_tag=RAF_ORF0056
NC_012633.1	Protein Homology	CDS	55798	56109	.	-	0	ID=cds-WP_012719332.1;Parent=gene-RAF_RS00325;Dbxref=GenBank:WP_012719332.1;Name=WP_012719332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719332.1;locus_tag=RAF_RS00325;product=winged helix-turn-helix domain-containing protein;protein_id=WP_012719332.1;transl_table=11
NC_012633.1	RefSeq	gene	56603	56968	.	+	.	ID=gene-RAF_RS00335;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=RAF_RS00335;old_locus_tag=RAF_ORF0057
NC_012633.1	Protein Homology	CDS	56603	56968	.	+	0	ID=cds-WP_010976750.1;Parent=gene-RAF_RS00335;Dbxref=GenBank:WP_010976750.1;Name=WP_010976750.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsF;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443531.1;locus_tag=RAF_RS00335;product=30S ribosomal protein S6;protein_id=WP_010976750.1;transl_table=11
NC_012633.1	RefSeq	gene	56993	57280	.	+	.	ID=gene-RAF_RS00340;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=RAF_RS00340;old_locus_tag=RAF_ORF0058
NC_012633.1	Protein Homology	CDS	56993	57280	.	+	0	ID=cds-WP_012719334.1;Parent=gene-RAF_RS00340;Dbxref=GenBank:WP_012719334.1;Name=WP_012719334.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsR;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596642.1;locus_tag=RAF_RS00340;product=30S ribosomal protein S18;protein_id=WP_012719334.1;transl_table=11
NC_012633.1	RefSeq	gene	57292	57807	.	+	.	ID=gene-RAF_RS00345;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=RAF_RS00345;old_locus_tag=RAF_ORF0059
NC_012633.1	Protein Homology	CDS	57292	57807	.	+	0	ID=cds-WP_012719335.1;Parent=gene-RAF_RS00345;Dbxref=GenBank:WP_012719335.1;Name=WP_012719335.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719335.1;locus_tag=RAF_RS00345;product=50S ribosomal protein L9;protein_id=WP_012719335.1;transl_table=11
NC_012633.1	RefSeq	gene	58106	59542	.	+	.	ID=gene-RAF_RS00350;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=RAF_RS00350;old_locus_tag=RAF_ORF0060
NC_012633.1	Protein Homology	CDS	58106	59542	.	+	0	ID=cds-WP_012719336.1;Parent=gene-RAF_RS00350;Dbxref=GenBank:WP_012719336.1;Name=WP_012719336.1;Ontology_term=GO:0008033,GO:0000166,GO:0005524,GO:0016879;gbkey=CDS;gene=tilS;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA,ligase activity%2C forming carbon-nitrogen bonds|0016879||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012152365.1;locus_tag=RAF_RS00350;product=tRNA lysidine(34) synthetase TilS;protein_id=WP_012719336.1;transl_table=11
NC_012633.1	RefSeq	gene	59643	61556	.	+	.	ID=gene-RAF_RS00355;Name=ftsH;gbkey=Gene;gene=ftsH;gene_biotype=protein_coding;locus_tag=RAF_RS00355;old_locus_tag=RAF_ORF0061
NC_012633.1	Protein Homology	CDS	59643	61556	.	+	0	ID=cds-WP_012719337.1;Parent=gene-RAF_RS00355;Dbxref=GenBank:WP_012719337.1;Name=WP_012719337.1;Ontology_term=GO:0006508,GO:0051301,GO:0004222,GO:0016887,GO:0016020;gbkey=CDS;gene=ftsH;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,ATP hydrolysis activity|0016887||IEA;go_process=proteolysis|0006508||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190560.1;locus_tag=RAF_RS00355;product=ATP-dependent zinc metalloprotease FtsH;protein_id=WP_012719337.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	61574	61967	.	+	.	ID=gene-RAF_RS09595;Name=RAF_RS09595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS09595;pseudo=true
NC_012633.1	Protein Homology	CDS	61574	61967	.	+	0	ID=cds-RAF_RS09595;Parent=gene-RAF_RS09595;Note=frameshifted;Ontology_term=GO:0006304,GO:0003677,GO:0003886,GO:0008168,GO:1904047;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA (cytosine-5-)-methyltransferase activity|0003886||IEA,methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: protein motif:HMM:NF012372.5;locus_tag=RAF_RS09595;product=DNA cytosine methyltransferase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	62463	63248	.	+	.	ID=gene-RAF_RS00365;Name=RAF_RS00365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00365;old_locus_tag=RAF_ORF0063
NC_012633.1	Protein Homology	CDS	62463	63248	.	+	0	ID=cds-WP_012719339.1;Parent=gene-RAF_RS00365;Dbxref=GenBank:WP_012719339.1;Name=WP_012719339.1;Ontology_term=GO:0008177,GO:0046872;gbkey=CDS;go_function=succinate dehydrogenase (quinone) activity|0008177||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190559.1;locus_tag=RAF_RS00365;product=succinate dehydrogenase iron-sulfur subunit;protein_id=WP_012719339.1;transl_table=11
NC_012633.1	RefSeq	gene	63323	63691	.	+	.	ID=gene-RAF_RS00370;Name=RAF_RS00370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00370;old_locus_tag=RAF_ORF0064
NC_012633.1	Protein Homology	CDS	63323	63691	.	+	0	ID=cds-WP_012719340.1;Parent=gene-RAF_RS00370;Dbxref=GenBank:WP_012719340.1;Name=WP_012719340.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410307.1;locus_tag=RAF_RS00370;product=lysozyme inhibitor LprI family protein;protein_id=WP_012719340.1;transl_table=11
NC_012633.1	RefSeq	gene	63834	65054	.	-	.	ID=gene-RAF_RS00375;Name=RAF_RS00375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00375;old_locus_tag=RAF_ORF0065
NC_012633.1	Protein Homology	CDS	63834	65054	.	-	0	ID=cds-WP_012719341.1;Parent=gene-RAF_RS00375;Dbxref=GenBank:WP_012719341.1;Name=WP_012719341.1;Ontology_term=GO:0032259,GO:0008168,GO:0008757,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016925906.1;locus_tag=RAF_RS00375;product=class I SAM-dependent methyltransferase;protein_id=WP_012719341.1;transl_table=11
NC_012633.1	RefSeq	gene	65033	65812	.	-	.	ID=gene-RAF_RS00380;Name=lgt;gbkey=Gene;gene=lgt;gene_biotype=protein_coding;locus_tag=RAF_RS00380;old_locus_tag=RAF_ORF0066
NC_012633.1	Protein Homology	CDS	65033	65812	.	-	0	ID=cds-WP_012719342.1;Parent=gene-RAF_RS00380;Dbxref=GenBank:WP_012719342.1;Name=WP_012719342.1;Ontology_term=GO:0009249,GO:0008961,GO:0016020;gbkey=CDS;gene=lgt;go_component=membrane|0016020||IEA;go_function=phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity|0008961||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190557.1;locus_tag=RAF_RS00380;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_012719342.1;transl_table=11
NC_012633.1	RefSeq	gene	66057	67220	.	+	.	ID=gene-RAF_RS00385;Name=RAF_RS00385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00385;old_locus_tag=RAF_ORF0067
NC_012633.1	Protein Homology	CDS	66057	67220	.	+	0	ID=cds-WP_012719343.1;Parent=gene-RAF_RS00385;Dbxref=GenBank:WP_012719343.1;Name=WP_012719343.1;Ontology_term=GO:0008381;gbkey=CDS;go_function=mechanosensitive monoatomic ion channel activity|0008381||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443543.1;locus_tag=RAF_RS00385;product=mechanosensitive ion channel family protein;protein_id=WP_012719343.1;transl_table=11
NC_012633.1	RefSeq	gene	67404	69086	.	+	.	ID=gene-RAF_RS00390;Name=yidC;gbkey=Gene;gene=yidC;gene_biotype=protein_coding;locus_tag=RAF_RS00390;old_locus_tag=RAF_ORF0068
NC_012633.1	Protein Homology	CDS	67404	69086	.	+	0	ID=cds-WP_012719344.1;Parent=gene-RAF_RS00390;Dbxref=GenBank:WP_012719344.1;Name=WP_012719344.1;Ontology_term=GO:0032977,GO:0016020;gbkey=CDS;gene=yidC;go_component=membrane|0016020||IEA;go_function=membrane insertase activity|0032977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719344.1;locus_tag=RAF_RS00390;product=membrane protein insertase YidC;protein_id=WP_012719344.1;transl_table=11
NC_012633.1	RefSeq	gene	69086	69631	.	+	.	ID=gene-RAF_RS00395;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;locus_tag=RAF_RS00395;old_locus_tag=RAF_ORF0069
NC_012633.1	Protein Homology	CDS	69086	69631	.	+	0	ID=cds-WP_012719345.1;Parent=gene-RAF_RS00395;Dbxref=GenBank:WP_012719345.1;Name=WP_012719345.1;Ontology_term=GO:0008654,GO:0008444,GO:0016020;gbkey=CDS;gene=pgsA;go_component=membrane|0016020||IEA;go_function=CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity|0008444||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596626.1;locus_tag=RAF_RS00395;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_012719345.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	69645	70204	.	+	.	ID=gene-RAF_RS00400;Name=RAF_RS00400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00400;pseudo=true
NC_012633.1	Protein Homology	CDS	69645	70204	.	+	0	ID=cds-RAF_RS00400;Parent=gene-RAF_RS00400;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012152373.1;locus_tag=RAF_RS00400;product=carbonic anhydrase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	70374	70757	.	-	.	ID=gene-RAF_RS00405;Name=RAF_RS00405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00405;old_locus_tag=RAF_ORF0072
NC_012633.1	Protein Homology	CDS	70374	70757	.	-	0	ID=cds-WP_041471794.1;Parent=gene-RAF_RS00405;Dbxref=GenBank:WP_041471794.1;Name=WP_041471794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443547.1;locus_tag=RAF_RS00405;product=hypothetical protein;protein_id=WP_041471794.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	70808	70957	.	-	.	ID=gene-RAF_RS07225;Name=RAF_RS07225;end_range=70957,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS07225;partial=true;pseudo=true;start_range=.,70808
NC_012633.1	Protein Homology	CDS	70808	70957	.	-	0	ID=cds-RAF_RS07225;Parent=gene-RAF_RS07225;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=70957,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995672.1;locus_tag=RAF_RS07225;partial=true;product=palindromic element RPE1 domain-containing protein;pseudo=true;start_range=.,70808;transl_table=11
NC_012633.1	RefSeq	gene	70977	71249	.	+	.	ID=gene-RAF_RS00410;Name=RAF_RS00410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00410;old_locus_tag=RAF_ORF0073
NC_012633.1	Protein Homology	CDS	70977	71249	.	+	0	ID=cds-WP_012719349.1;Parent=gene-RAF_RS00410;Dbxref=GenBank:WP_012719349.1;Name=WP_012719349.1;Ontology_term=GO:0032259,GO:0008168,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996835.1;locus_tag=RAF_RS00410;product=class I SAM-dependent methyltransferase;protein_id=WP_012719349.1;transl_table=11
NC_012633.1	RefSeq	gene	71481	71621	.	+	.	ID=gene-RAF_RS00415;Name=RAF_RS00415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00415
NC_012633.1	Protein Homology	CDS	71481	71621	.	+	0	ID=cds-WP_016769756.1;Parent=gene-RAF_RS00415;Dbxref=GenBank:WP_016769756.1;Name=WP_016769756.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016769756.1;locus_tag=RAF_RS00415;product=hypothetical protein;protein_id=WP_016769756.1;transl_table=11
NC_012633.1	RefSeq	gene	71813	72661	.	+	.	ID=gene-RAF_RS00420;Name=RAF_RS00420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00420;old_locus_tag=RAF_ORF0074
NC_012633.1	Protein Homology	CDS	71813	72661	.	+	0	ID=cds-WP_012719350.1;Parent=gene-RAF_RS00420;Dbxref=GenBank:WP_012719350.1;Name=WP_012719350.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410314.1;locus_tag=RAF_RS00420;product=phosphodiester glycosidase family protein;protein_id=WP_012719350.1;transl_table=11
NC_012633.1	RefSeq	gene	72705	72812	.	+	.	ID=gene-RAF_RS10245;Name=RAF_RS10245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10245
NC_012633.1	Protein Homology	CDS	72705	72812	.	+	0	ID=cds-WP_014419687.1;Parent=gene-RAF_RS10245;Dbxref=GenBank:WP_014419687.1;Name=WP_014419687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150308.1;locus_tag=RAF_RS10245;product=hypothetical protein;protein_id=WP_014419687.1;transl_table=11
NC_012633.1	RefSeq	gene	72879	73553	.	-	.	ID=gene-RAF_RS00425;Name=RAF_RS00425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00425;old_locus_tag=RAF_ORF0075
NC_012633.1	Protein Homology	CDS	72879	73553	.	-	0	ID=cds-WP_012719351.1;Parent=gene-RAF_RS00425;Dbxref=GenBank:WP_012719351.1;Name=WP_012719351.1;Ontology_term=GO:0006412,GO:0042586,GO:0046872;gbkey=CDS;go_function=peptide deformylase activity|0042586||IEA,metal ion binding|0046872||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996828.1;locus_tag=RAF_RS00425;product=peptide deformylase;protein_id=WP_012719351.1;transl_table=11
NC_012633.1	RefSeq	gene	73752	75257	.	+	.	ID=gene-RAF_RS00430;Name=tlc1;gbkey=Gene;gene=tlc1;gene_biotype=protein_coding;locus_tag=RAF_RS00430;old_locus_tag=RAF_ORF0076
NC_012633.1	Protein Homology	CDS	73752	75257	.	+	0	ID=cds-WP_012719352.1;Parent=gene-RAF_RS00430;Dbxref=GenBank:WP_012719352.1;Name=WP_012719352.1;gbkey=CDS;gene=tlc1;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719352.1;locus_tag=RAF_RS00430;product=ATP/ADP exchange transporter Tlc1;protein_id=WP_012719352.1;transl_table=11
NC_012633.1	RefSeq	gene	75316	76611	.	+	.	ID=gene-RAF_RS00435;Name=RAF_RS00435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00435;old_locus_tag=RAF_ORF0077
NC_012633.1	Protein Homology	CDS	75316	76611	.	+	0	ID=cds-WP_012719353.1;Parent=gene-RAF_RS00435;Dbxref=GenBank:WP_012719353.1;Name=WP_012719353.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150310.1;locus_tag=RAF_RS00435;product=MFS transporter;protein_id=WP_012719353.1;transl_table=11
NC_012633.1	RefSeq	gene	76636	77058	.	+	.	ID=gene-RAF_RS00440;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=RAF_RS00440;old_locus_tag=RAF_ORF0078
NC_012633.1	Protein Homology	CDS	76636	77058	.	+	0	ID=cds-WP_010976767.1;Parent=gene-RAF_RS00440;Dbxref=GenBank:WP_010976767.1;Name=WP_010976767.1;Ontology_term=GO:0004550;gbkey=CDS;gene=ndk;go_function=nucleoside diphosphate kinase activity|0004550||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012013293.1;locus_tag=RAF_RS00440;product=nucleoside-diphosphate kinase;protein_id=WP_010976767.1;transl_table=11
NC_012633.1	RefSeq	gene	77062	78930	.	+	.	ID=gene-RAF_RS00445;Name=mnmG;gbkey=Gene;gene=mnmG;gene_biotype=protein_coding;locus_tag=RAF_RS00445;old_locus_tag=RAF_ORF0079
NC_012633.1	Protein Homology	CDS	77062	78930	.	+	0	ID=cds-WP_012719354.1;Parent=gene-RAF_RS00445;Dbxref=GenBank:WP_012719354.1;Name=WP_012719354.1;Ontology_term=GO:0002098,GO:0008033;gbkey=CDS;gene=mnmG;go_process=tRNA wobble uridine modification|0002098||IEA,tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011478002.1;locus_tag=RAF_RS00445;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG;protein_id=WP_012719354.1;transl_table=11
NC_012633.1	RefSeq	gene	78914	79489	.	+	.	ID=gene-RAF_RS00450;Name=rsmG;gbkey=Gene;gene=rsmG;gene_biotype=protein_coding;locus_tag=RAF_RS00450;old_locus_tag=RAF_ORF0080
NC_012633.1	Protein Homology	CDS	78914	79489	.	+	0	ID=cds-WP_004996817.1;Parent=gene-RAF_RS00450;Dbxref=GenBank:WP_004996817.1;Name=WP_004996817.1;Ontology_term=GO:0031167,GO:0046118,GO:0008168;gbkey=CDS;gene=rsmG;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA,7-methylguanosine biosynthetic process|0046118||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190548.1;locus_tag=RAF_RS00450;product=16S rRNA (guanine(527)-N(7))-methyltransferase RsmG;protein_id=WP_004996817.1;transl_table=11
NC_012633.1	RefSeq	gene	79486	80253	.	+	.	ID=gene-RAF_RS00455;Name=RAF_RS00455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00455;old_locus_tag=RAF_ORF0081
NC_012633.1	Protein Homology	CDS	79486	80253	.	+	0	ID=cds-WP_012719355.1;Parent=gene-RAF_RS00455;Dbxref=GenBank:WP_012719355.1;Name=WP_012719355.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443390.1;locus_tag=RAF_RS00455;product=ParA family protein;protein_id=WP_012719355.1;transl_table=11
NC_012633.1	RefSeq	gene	80240	81100	.	+	.	ID=gene-RAF_RS00460;Name=RAF_RS00460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00460;old_locus_tag=RAF_ORF0082
NC_012633.1	Protein Homology	CDS	80240	81100	.	+	0	ID=cds-WP_012719356.1;Parent=gene-RAF_RS00460;Dbxref=GenBank:WP_012719356.1;Name=WP_012719356.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190546.1;locus_tag=RAF_RS00460;product=ParB/RepB/Spo0J family partition protein;protein_id=WP_012719356.1;transl_table=11
NC_012633.1	RefSeq	gene	81358	83025	.	+	.	ID=gene-RAF_RS00465;Name=ettA;gbkey=Gene;gene=ettA;gene_biotype=protein_coding;locus_tag=RAF_RS00465;old_locus_tag=RAF_ORF0083
NC_012633.1	Protein Homology	CDS	81358	83025	.	+	0	ID=cds-WP_012719357.1;Parent=gene-RAF_RS00465;Dbxref=GenBank:WP_012719357.1;Name=WP_012719357.1;Ontology_term=GO:0045900,GO:0005524;gbkey=CDS;gene=ettA;go_function=ATP binding|0005524||IEA;go_process=negative regulation of translational elongation|0045900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443392.1;locus_tag=RAF_RS00465;product=energy-dependent translational throttle protein EttA;protein_id=WP_012719357.1;transl_table=11
NC_012633.1	RefSeq	gene	83028	83345	.	+	.	ID=gene-RAF_RS00470;Name=RAF_RS00470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00470;old_locus_tag=RAF_ORF0084
NC_012633.1	Protein Homology	CDS	83028	83345	.	+	0	ID=cds-WP_004996813.1;Parent=gene-RAF_RS00470;Dbxref=GenBank:WP_004996813.1;Name=WP_004996813.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443393.1;locus_tag=RAF_RS00470;product=DUF2672 domain-containing protein;protein_id=WP_004996813.1;transl_table=11
NC_012633.1	RefSeq	gene	83381	84205	.	+	.	ID=gene-RAF_RS00475;Name=kdsA;gbkey=Gene;gene=kdsA;gene_biotype=protein_coding;locus_tag=RAF_RS00475;old_locus_tag=RAF_ORF0085
NC_012633.1	Protein Homology	CDS	83381	84205	.	+	0	ID=cds-WP_012719358.1;Parent=gene-RAF_RS00475;Dbxref=GenBank:WP_012719358.1;Name=WP_012719358.1;Ontology_term=GO:0009058,GO:0008676;gbkey=CDS;gene=kdsA;go_function=3-deoxy-8-phosphooctulonate synthase activity|0008676||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190543.1;locus_tag=RAF_RS00475;product=3-deoxy-8-phosphooctulonate synthase;protein_id=WP_012719358.1;transl_table=11
NC_012633.1	RefSeq	gene	84933	85400	.	+	.	ID=gene-RAF_RS09155;Name=RAF_RS09155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09155;old_locus_tag=RAF_ORF0086
NC_012633.1	Protein Homology	CDS	84933	85400	.	+	0	ID=cds-WP_012719359.1;Parent=gene-RAF_RS09155;Dbxref=GenBank:WP_012719359.1;Name=WP_012719359.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719359.1;locus_tag=RAF_RS09155;product=hypothetical protein;protein_id=WP_012719359.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	85521	85634	.	+	.	ID=gene-RAF_RS10680;Name=RAF_RS10680;end_range=85634,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10680;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	85521	85634	.	+	0	ID=cds-RAF_RS10680;Parent=gene-RAF_RS10680;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=85634,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF046685.1;locus_tag=RAF_RS10680;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	85967	86299	.	-	.	ID=gene-RAF_RS00485;Name=RAF_RS00485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00485;old_locus_tag=RAF_ORF0087
NC_012633.1	Protein Homology	CDS	85967	86299	.	-	0	ID=cds-WP_012719360.1;Parent=gene-RAF_RS00485;Dbxref=GenBank:WP_012719360.1;Name=WP_012719360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012013302.1;locus_tag=RAF_RS00485;product=iron-sulfur cluster assembly accessory protein;protein_id=WP_012719360.1;transl_table=11
NC_012633.1	RefSeq	gene	86277	86435	.	-	.	ID=gene-RAF_RS07245;Name=RAF_RS07245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07245
NC_012633.1	GeneMarkS-2+	CDS	86277	86435	.	-	0	ID=cds-WP_083762077.1;Parent=gene-RAF_RS07245;Dbxref=GenBank:WP_083762077.1;Name=WP_083762077.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS07245;product=multidrug transporter;protein_id=WP_083762077.1;transl_table=11
NC_012633.1	RefSeq	gene	86529	87683	.	+	.	ID=gene-RAF_RS00490;Name=RAF_RS00490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00490;old_locus_tag=RAF_ORF0088
NC_012633.1	Protein Homology	CDS	86529	87683	.	+	0	ID=cds-WP_010976778.1;Parent=gene-RAF_RS00490;Dbxref=GenBank:WP_010976778.1;Name=WP_010976778.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016925920.1;locus_tag=RAF_RS00490;product=deoxyguanosinetriphosphate triphosphohydrolase;protein_id=WP_010976778.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	87669	87820	.	-	.	ID=gene-RAF_RS07250;Name=RAF_RS07250;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS07250;partial=true;pseudo=true;start_range=.,87669
NC_012633.1	Protein Homology	CDS	87669	87820	.	-	0	ID=cds-RAF_RS07250;Parent=gene-RAF_RS07250;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477989.1;locus_tag=RAF_RS07250;partial=true;product=palindromic element RPE1 domain-containing protein;pseudo=true;start_range=.,87669;transl_table=11
NC_012633.1	RefSeq	gene	87835	89565	.	+	.	ID=gene-RAF_RS00495;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=RAF_RS00495;old_locus_tag=RAF_ORF0089
NC_012633.1	Protein Homology	CDS	87835	89565	.	+	0	ID=cds-WP_012719361.1;Parent=gene-RAF_RS00495;Dbxref=GenBank:WP_012719361.1;Name=WP_012719361.1;Ontology_term=GO:0006420,GO:0004814,GO:0005524,GO:0005737;gbkey=CDS;gene=argS;go_component=cytoplasm|0005737||IEA;go_function=arginine-tRNA ligase activity|0004814||IEA,ATP binding|0005524||IEA;go_process=arginyl-tRNA aminoacylation|0006420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012013304.1;locus_tag=RAF_RS00495;product=arginine--tRNA ligase;protein_id=WP_012719361.1;transl_table=11
NC_012633.1	RefSeq	gene	89738	90412	.	+	.	ID=gene-RAF_RS00500;Name=RAF_RS00500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00500;old_locus_tag=RAF_ORF0090
NC_012633.1	Protein Homology	CDS	89738	90412	.	+	0	ID=cds-WP_010976780.1;Parent=gene-RAF_RS00500;Dbxref=GenBank:WP_010976780.1;Name=WP_010976780.1;Ontology_term=GO:0042834,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409838.1;locus_tag=RAF_RS00500;product=SPOR domain-containing protein;protein_id=WP_010976780.1;transl_table=11
NC_012633.1	RefSeq	gene	90590	92806	.	+	.	ID=gene-RAF_RS00505;Name=parC;gbkey=Gene;gene=parC;gene_biotype=protein_coding;locus_tag=RAF_RS00505;old_locus_tag=RAF_ORF0092
NC_012633.1	Protein Homology	CDS	90590	92806	.	+	0	ID=cds-WP_012719363.1;Parent=gene-RAF_RS00505;Dbxref=GenBank:WP_012719363.1;Name=WP_012719363.1;Ontology_term=GO:0006265,GO:0003918,GO:0009340;gbkey=CDS;gene=parC;go_component=DNA topoisomerase IV complex|0009340||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976781.1;locus_tag=RAF_RS00505;product=DNA topoisomerase IV subunit A;protein_id=WP_012719363.1;transl_table=11
NC_012633.1	RefSeq	gene	92798	93013	.	-	.	ID=gene-RAF_RS00510;Name=RAF_RS00510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00510;old_locus_tag=RAF_ORF0093
NC_012633.1	Protein Homology	CDS	92798	93013	.	-	0	ID=cds-WP_041471795.1;Parent=gene-RAF_RS00510;Dbxref=GenBank:WP_041471795.1;Name=WP_041471795.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410328.1;locus_tag=RAF_RS00510;product=hypothetical protein;protein_id=WP_041471795.1;transl_table=11
NC_012633.1	RefSeq	gene	93399	94715	.	-	.	ID=gene-RAF_RS00515;Name=RAF_RS00515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00515;old_locus_tag=RAF_ORF0094
NC_012633.1	Protein Homology	CDS	93399	94715	.	-	0	ID=cds-WP_012719365.1;Parent=gene-RAF_RS00515;Dbxref=GenBank:WP_012719365.1;Name=WP_012719365.1;Ontology_term=GO:0015288,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=porin activity|0015288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599726.1;locus_tag=RAF_RS00515;product=porin;protein_id=WP_012719365.1;transl_table=11
NC_012633.1	RefSeq	gene	94987	95553	.	+	.	ID=gene-RAF_RS00520;Name=dcd;gbkey=Gene;gene=dcd;gene_biotype=protein_coding;locus_tag=RAF_RS00520;old_locus_tag=RAF_ORF0095
NC_012633.1	Protein Homology	CDS	94987	95553	.	+	0	ID=cds-WP_004996797.1;Parent=gene-RAF_RS00520;Dbxref=GenBank:WP_004996797.1;Name=WP_004996797.1;Ontology_term=GO:0006229,GO:0008829;gbkey=CDS;gene=dcd;go_function=dCTP deaminase activity|0008829||IEA;go_process=dUTP biosynthetic process|0006229||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190536.1;locus_tag=RAF_RS00520;product=dCTP deaminase;protein_id=WP_004996797.1;transl_table=11
NC_012633.1	RefSeq	gene	95599	96057	.	+	.	ID=gene-RAF_RS00525;Name=secB;gbkey=Gene;gene=secB;gene_biotype=protein_coding;locus_tag=RAF_RS00525;old_locus_tag=RAF_ORF0096
NC_012633.1	Protein Homology	CDS	95599	96057	.	+	0	ID=cds-WP_012719366.1;Parent=gene-RAF_RS00525;Dbxref=GenBank:WP_012719366.1;Name=WP_012719366.1;Ontology_term=GO:0043952,GO:0050821,GO:0051082,GO:0005737;gbkey=CDS;gene=secB;go_component=cytoplasm|0005737||IEA;go_function=unfolded protein binding|0051082||IEA;go_process=protein transport by the Sec complex|0043952||IEA,protein stabilization|0050821||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443406.1;locus_tag=RAF_RS00525;product=protein-export chaperone SecB;protein_id=WP_012719366.1;transl_table=11
NC_012633.1	RefSeq	gene	96276	96989	.	+	.	ID=gene-RAF_RS00530;Name=ctrA;gbkey=Gene;gene=ctrA;gene_biotype=protein_coding;locus_tag=RAF_RS00530;old_locus_tag=RAF_ORF0097
NC_012633.1	Protein Homology	CDS	96276	96989	.	+	0	ID=cds-WP_012719367.1;Parent=gene-RAF_RS00530;Dbxref=GenBank:WP_012719367.1;Name=WP_012719367.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=ctrA;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477946.1;locus_tag=RAF_RS00530;product=response regulator transcription factor CtrA;protein_id=WP_012719367.1;transl_table=11
NC_012633.1	RefSeq	gene	96993	97814	.	+	.	ID=gene-RAF_RS00535;Name=queF;gbkey=Gene;gene=queF;gene_biotype=protein_coding;locus_tag=RAF_RS00535;old_locus_tag=RAF_ORF0098
NC_012633.1	Protein Homology	CDS	96993	97814	.	+	0	ID=cds-WP_012719368.1;Parent=gene-RAF_RS00535;Dbxref=GenBank:WP_012719368.1;Name=WP_012719368.1;Note=Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis;Ontology_term=GO:0008616,GO:0033739,GO:0043867;gbkey=CDS;gene=queF;go_function=preQ1 synthase activity|0033739||IEA,7-cyano-7-deazaguanine tRNA-ribosyltransferase activity|0043867||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190533.1;locus_tag=RAF_RS00535;product=NADPH-dependent 7-cyano-7-deazaguanine reductase QueF;protein_id=WP_012719368.1;transl_table=11
NC_012633.1	RefSeq	gene	98059	98619	.	-	.	ID=gene-RAF_RS00540;Name=RAF_RS00540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00540;old_locus_tag=RAF_ORF0099
NC_012633.1	Protein Homology	CDS	98059	98619	.	-	0	ID=cds-WP_010976786.1;Parent=gene-RAF_RS00540;Dbxref=GenBank:WP_010976786.1;Name=WP_010976786.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917578.1;locus_tag=RAF_RS00540;product=DUF1013 domain-containing protein;protein_id=WP_010976786.1;transl_table=11
NC_012633.1	RefSeq	gene	98674	100071	.	-	.	ID=gene-RAF_RS00545;Name=RAF_RS00545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00545;old_locus_tag=RAF_ORF0100
NC_012633.1	Protein Homology	CDS	98674	100071	.	-	0	ID=cds-WP_012719369.1;Parent=gene-RAF_RS00545;Dbxref=GenBank:WP_012719369.1;Name=WP_012719369.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443409.1;locus_tag=RAF_RS00545;product=NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta;protein_id=WP_012719369.1;transl_table=11
NC_012633.1	RefSeq	gene	100212	100946	.	-	.	ID=gene-RAF_RS00550;Name=RAF_RS00550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00550;old_locus_tag=RAF_ORF0101
NC_012633.1	Protein Homology	CDS	100212	100946	.	-	0	ID=cds-WP_012719370.1;Parent=gene-RAF_RS00550;Dbxref=GenBank:WP_012719370.1;Name=WP_012719370.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270415.1;locus_tag=RAF_RS00550;product=OmpW family outer membrane protein;protein_id=WP_012719370.1;transl_table=11
NC_012633.1	RefSeq	gene	101101	101985	.	+	.	ID=gene-RAF_RS00555;Name=RAF_RS00555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00555;old_locus_tag=RAF_ORF0102
NC_012633.1	Protein Homology	CDS	101101	101985	.	+	0	ID=cds-WP_004996775.1;Parent=gene-RAF_RS00555;Dbxref=GenBank:WP_004996775.1;Name=WP_004996775.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596540.1;locus_tag=RAF_RS00555;product=DMT family transporter;protein_id=WP_004996775.1;transl_table=11
NC_012633.1	RefSeq	gene	101972	103228	.	+	.	ID=gene-RAF_RS00560;Name=RAF_RS00560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00560;old_locus_tag=RAF_ORF0103
NC_012633.1	Protein Homology	CDS	101972	103228	.	+	0	ID=cds-WP_012719371.1;Parent=gene-RAF_RS00560;Dbxref=GenBank:WP_012719371.1;Name=WP_012719371.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409848.1;locus_tag=RAF_RS00560;product=MFS transporter;protein_id=WP_012719371.1;transl_table=11
NC_012633.1	RefSeq	gene	103509	103721	.	+	.	ID=gene-RAF_RS00565;Name=RAF_RS00565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00565
NC_012633.1	Protein Homology	CDS	103509	103721	.	+	0	ID=cds-WP_014273150.1;Parent=gene-RAF_RS00565;Dbxref=GenBank:WP_014273150.1;Name=WP_014273150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410334.1;locus_tag=RAF_RS00565;product=hypothetical protein;protein_id=WP_014273150.1;transl_table=11
NC_012633.1	RefSeq	gene	103809	103883	.	+	.	ID=gene-RAF_RS00570;Name=RAF_RS00570;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS00570;old_locus_tag=RAF_RNA03
NC_012633.1	tRNAscan-SE	tRNA	103809	103883	.	+	.	ID=rna-RAF_RS00570;Parent=gene-RAF_RS00570;anticodon=(pos:103841..103843);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS00570;product=tRNA-Thr
NC_012633.1	tRNAscan-SE	exon	103809	103883	.	+	.	ID=exon-RAF_RS00570-1;Parent=rna-RAF_RS00570;anticodon=(pos:103841..103843);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS00570;product=tRNA-Thr
NC_012633.1	RefSeq	gene	104062	104364	.	+	.	ID=gene-RAF_RS00575;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=RAF_RS00575;old_locus_tag=RAF_ORF0104
NC_012633.1	Protein Homology	CDS	104062	104364	.	+	0	ID=cds-WP_012719372.1;Parent=gene-RAF_RS00575;Dbxref=GenBank:WP_012719372.1;Name=WP_012719372.1;Ontology_term=GO:0015739,GO:0015136,GO:0016020;gbkey=CDS;gene=secG;go_component=membrane|0016020||IEA;go_function=sialic acid transmembrane transporter activity|0015136||IEA;go_process=sialic acid transport|0015739||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190527.1;locus_tag=RAF_RS00575;product=preprotein translocase subunit SecG;protein_id=WP_012719372.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	104648	105220	.	+	.	ID=gene-RAF_RS07260;Name=RAF_RS07260;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS07260;pseudo=true
NC_012633.1	Protein Homology	CDS	104648	105220	.	+	0	ID=cds-RAF_RS07260;Parent=gene-RAF_RS07260;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014363545.1;locus_tag=RAF_RS07260;product=VUT family protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	105266	111067	.	-	.	ID=gene-RAF_RS00580;Name=RAF_RS00580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00580;old_locus_tag=RAF_ORF0105
NC_012633.1	Protein Homology	CDS	105266	111067	.	-	0	ID=cds-WP_012719373.1;Parent=gene-RAF_RS00580;Dbxref=GenBank:WP_012719373.1;Name=WP_012719373.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719373.1;locus_tag=RAF_RS00580;product=autotransporter domain-containing protein;protein_id=WP_012719373.1;transl_table=11
NC_012633.1	RefSeq	gene	111304	112683	.	+	.	ID=gene-RAF_RS00585;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=RAF_RS00585;old_locus_tag=RAF_ORF0106
NC_012633.1	Protein Homology	CDS	111304	112683	.	+	0	ID=cds-WP_012719374.1;Parent=gene-RAF_RS00585;Dbxref=GenBank:WP_012719374.1;Name=WP_012719374.1;Ontology_term=GO:0006423,GO:0004817,GO:0005524,GO:0005737;gbkey=CDS;gene=cysS;go_component=cytoplasm|0005737||IEA;go_function=cysteine-tRNA ligase activity|0004817||IEA,ATP binding|0005524||IEA;go_process=cysteinyl-tRNA aminoacylation|0006423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443416.1;locus_tag=RAF_RS00585;product=cysteine--tRNA ligase;protein_id=WP_012719374.1;transl_table=11
NC_012633.1	RefSeq	gene	112930	113817	.	+	.	ID=gene-RAF_RS00590;Name=rpsB;gbkey=Gene;gene=rpsB;gene_biotype=protein_coding;locus_tag=RAF_RS00590;old_locus_tag=RAF_ORF0107
NC_012633.1	Protein Homology	CDS	112930	113817	.	+	0	ID=cds-WP_004996764.1;Parent=gene-RAF_RS00590;Dbxref=GenBank:WP_004996764.1;Name=WP_004996764.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsB;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012148234.1;locus_tag=RAF_RS00590;product=30S ribosomal protein S2;protein_id=WP_004996764.1;transl_table=11
NC_012633.1	RefSeq	gene	114014	114943	.	+	.	ID=gene-RAF_RS00595;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=RAF_RS00595;old_locus_tag=RAF_ORF0108
NC_012633.1	Protein Homology	CDS	114014	114943	.	+	0	ID=cds-WP_012719375.1;Parent=gene-RAF_RS00595;Dbxref=GenBank:WP_012719375.1;Name=WP_012719375.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tsf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477934.1;locus_tag=RAF_RS00595;product=translation elongation factor Ts;protein_id=WP_012719375.1;transl_table=11
NC_012633.1	RefSeq	gene	115416	115748	.	+	.	ID=gene-RAF_RS00600;Name=RAF_RS00600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00600;old_locus_tag=RAF_ORF0109
NC_012633.1	Protein Homology	CDS	115416	115748	.	+	0	ID=cds-WP_012719376.1;Parent=gene-RAF_RS00600;Dbxref=GenBank:WP_012719376.1;Name=WP_012719376.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719376.1;locus_tag=RAF_RS00600;product=hypothetical protein;protein_id=WP_012719376.1;transl_table=11
NC_012633.1	RefSeq	gene	115908	116078	.	+	.	ID=gene-RAF_RS00605;Name=RAF_RS00605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00605
NC_012633.1	GeneMarkS-2+	CDS	115908	116078	.	+	0	ID=cds-WP_234943911.1;Parent=gene-RAF_RS00605;Dbxref=GenBank:WP_234943911.1;Name=WP_234943911.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS00605;product=hypothetical protein;protein_id=WP_234943911.1;transl_table=11
NC_012633.1	RefSeq	gene	116098	116316	.	+	.	ID=gene-RAF_RS00610;Name=RAF_RS00610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00610
NC_012633.1	GeneMarkS-2+	CDS	116098	116316	.	+	0	ID=cds-WP_041471796.1;Parent=gene-RAF_RS00610;Dbxref=GenBank:WP_041471796.1;Name=WP_041471796.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS00610;product=hypothetical protein;protein_id=WP_041471796.1;transl_table=11
NC_012633.1	RefSeq	gene	116460	117854	.	-	.	ID=gene-RAF_RS00615;Name=waaA;gbkey=Gene;gene=waaA;gene_biotype=protein_coding;locus_tag=RAF_RS00615;old_locus_tag=RAF_ORF0110
NC_012633.1	Protein Homology	CDS	116460	117854	.	-	0	ID=cds-WP_012719377.1;Parent=gene-RAF_RS00615;Dbxref=GenBank:WP_012719377.1;Name=WP_012719377.1;Ontology_term=GO:0016740;gbkey=CDS;gene=waaA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443419.1;locus_tag=RAF_RS00615;product=lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase;protein_id=WP_012719377.1;transl_table=11
NC_012633.1	RefSeq	gene	117851	118507	.	-	.	ID=gene-RAF_RS00620;Name=RAF_RS00620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00620;old_locus_tag=RAF_ORF0111
NC_012633.1	Protein Homology	CDS	117851	118507	.	-	0	ID=cds-WP_004996752.1;Parent=gene-RAF_RS00620;Dbxref=GenBank:WP_004996752.1;Name=WP_004996752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443420.1;locus_tag=RAF_RS00620;product=lysophospholipid acyltransferase family protein;protein_id=WP_004996752.1;transl_table=11
NC_012633.1	RefSeq	gene	118658	119863	.	-	.	ID=gene-RAF_RS00625;Name=RAF_RS00625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00625;old_locus_tag=RAF_ORF0112
NC_012633.1	Protein Homology	CDS	118658	119863	.	-	0	ID=cds-WP_012719378.1;Parent=gene-RAF_RS00625;Dbxref=GenBank:WP_012719378.1;Name=WP_012719378.1;Ontology_term=GO:0009058,GO:0008483,GO:0030170;gbkey=CDS;go_function=transaminase activity|0008483||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443421.1;locus_tag=RAF_RS00625;product=pyridoxal phosphate-dependent aminotransferase;protein_id=WP_012719378.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	119894	120100	.	-	.	ID=gene-RAF_RS10250;Name=RAF_RS10250;end_range=120100,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10250;partial=true;pseudo=true;start_range=.,119894
NC_012633.1	Protein Homology	CDS	119894	120100	.	-	0	ID=cds-RAF_RS10250;Parent=gene-RAF_RS10250;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0008219;end_range=120100,.;gbkey=CDS;go_process=cell death|0008219||IEA;inference=COORDINATES: protein motif:HMM:NF018476.5;locus_tag=RAF_RS10250;partial=true;product=Txe/YoeB family addiction module toxin;pseudo=true;start_range=.,119894;transl_table=11
NC_012633.1	RefSeq	gene	120524	121528	.	+	.	ID=gene-RAF_RS00630;Name=RAF_RS00630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00630;old_locus_tag=RAF_ORF0113
NC_012633.1	Protein Homology	CDS	120524	121528	.	+	0	ID=cds-WP_012719379.1;Parent=gene-RAF_RS00630;Dbxref=GenBank:WP_012719379.1;Name=WP_012719379.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996748.1;locus_tag=RAF_RS00630;product=methyltransferase domain-containing protein;protein_id=WP_012719379.1;transl_table=11
NC_012633.1	RefSeq	gene	121533	122288	.	+	.	ID=gene-RAF_RS00635;Name=RAF_RS00635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00635;old_locus_tag=RAF_ORF0114
NC_012633.1	Protein Homology	CDS	121533	122288	.	+	0	ID=cds-WP_012719380.1;Parent=gene-RAF_RS00635;Dbxref=GenBank:WP_012719380.1;Name=WP_012719380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599738.1;locus_tag=RAF_RS00635;product=VacJ family lipoprotein;protein_id=WP_012719380.1;transl_table=11
NC_012633.1	RefSeq	gene	122308	122907	.	+	.	ID=gene-RAF_RS00640;Name=RAF_RS00640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00640;old_locus_tag=RAF_ORF0115
NC_012633.1	Protein Homology	CDS	122308	122907	.	+	0	ID=cds-WP_012719381.1;Parent=gene-RAF_RS00640;Dbxref=GenBank:WP_012719381.1;Name=WP_012719381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443424.1;locus_tag=RAF_RS00640;product=phospholipid-binding protein MlaC;protein_id=WP_012719381.1;transl_table=11
NC_012633.1	RefSeq	gene	123205	123381	.	+	.	ID=gene-RAF_RS10255;Name=RAF_RS10255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10255
NC_012633.1	Protein Homology	CDS	123205	123381	.	+	0	ID=cds-WP_268738945.1;Parent=gene-RAF_RS10255;Dbxref=GenBank:WP_268738945.1;Name=WP_268738945.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025165.5;locus_tag=RAF_RS10255;product=ribose-phosphate pyrophosphokinase-like domain-containing protein;protein_id=WP_268738945.1;transl_table=11
NC_012633.1	RefSeq	gene	123390	123740	.	+	.	ID=gene-RAF_RS00645;Name=prs;gbkey=Gene;gene=prs;gene_biotype=protein_coding;locus_tag=RAF_RS00645;old_locus_tag=RAF_ORF0116
NC_012633.1	Protein Homology	CDS	123390	123740	.	+	0	ID=cds-WP_041471797.1;Parent=gene-RAF_RS00645;Dbxref=GenBank:WP_041471797.1;Name=WP_041471797.1;Ontology_term=GO:0009165,GO:0000287,GO:0004749;gbkey=CDS;gene=prs;go_function=magnesium ion binding|0000287||IEA,ribose phosphate diphosphokinase activity|0004749||IEA;go_process=nucleotide biosynthetic process|0009165||IEA;inference=COORDINATES: protein motif:HMM:TIGR01251.1;locus_tag=RAF_RS00645;product=ribose-phosphate diphosphokinase;protein_id=WP_041471797.1;transl_table=11
NC_012633.1	RefSeq	gene	123721	123888	.	+	.	ID=gene-RAF_RS00650;Name=RAF_RS00650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00650
NC_012633.1	Protein Homology	CDS	123721	123888	.	+	0	ID=cds-WP_041471798.1;Parent=gene-RAF_RS00650;Dbxref=GenBank:WP_041471798.1;Name=WP_041471798.1;Ontology_term=GO:0009116;gbkey=CDS;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150349.1;locus_tag=RAF_RS00650;product=phosphoribosyltransferase family protein;protein_id=WP_041471798.1;transl_table=11
NC_012633.1	RefSeq	gene	123872	124084	.	+	.	ID=gene-RAF_RS07285;Name=RAF_RS07285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07285
NC_012633.1	Protein Homology	CDS	123872	124084	.	+	0	ID=cds-WP_234943953.1;Parent=gene-RAF_RS07285;Dbxref=GenBank:WP_234943953.1;Name=WP_234943953.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410344.1;locus_tag=RAF_RS07285;product=palindromic element RPE1 domain-containing protein;protein_id=WP_234943953.1;transl_table=11
NC_012633.1	RefSeq	gene	124151	125218	.	+	.	ID=gene-RAF_RS00655;Name=RAF_RS00655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00655;old_locus_tag=RAF_ORF0118
NC_012633.1	Protein Homology	CDS	124151	125218	.	+	0	ID=cds-WP_012719382.1;Parent=gene-RAF_RS00655;Dbxref=GenBank:WP_012719382.1;Name=WP_012719382.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976808.1;locus_tag=RAF_RS00655;product=alanine racemase;protein_id=WP_012719382.1;transl_table=11
NC_012633.1	RefSeq	gene	125364	126143	.	+	.	ID=gene-RAF_RS00660;Name=RAF_RS00660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00660;old_locus_tag=RAF_ORF0119
NC_012633.1	Protein Homology	CDS	125364	126143	.	+	0	ID=cds-WP_004996740.1;Parent=gene-RAF_RS00660;Dbxref=GenBank:WP_004996740.1;Name=WP_004996740.1;Ontology_term=GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190515.1;locus_tag=RAF_RS00660;product=MlaE family ABC transporter permease;protein_id=WP_004996740.1;transl_table=11
NC_012633.1	RefSeq	gene	126297	127052	.	+	.	ID=gene-RAF_RS00665;Name=RAF_RS00665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00665;old_locus_tag=RAF_ORF0120
NC_012633.1	Protein Homology	CDS	126297	127052	.	+	0	ID=cds-WP_012719383.1;Parent=gene-RAF_RS00665;Dbxref=GenBank:WP_012719383.1;Name=WP_012719383.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443428.1;locus_tag=RAF_RS00665;product=ABC transporter ATP-binding protein;protein_id=WP_012719383.1;transl_table=11
NC_012633.1	RefSeq	gene	127054	127302	.	+	.	ID=gene-RAF_RS00670;Name=RAF_RS00670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00670;old_locus_tag=RAF_ORF0121
NC_012633.1	Protein Homology	CDS	127054	127302	.	+	0	ID=cds-WP_004996738.1;Parent=gene-RAF_RS00670;Dbxref=GenBank:WP_004996738.1;Name=WP_004996738.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443429.1;locus_tag=RAF_RS00670;product=DUF5510 family protein;protein_id=WP_004996738.1;transl_table=11
NC_012633.1	RefSeq	gene	127380	127592	.	-	.	ID=gene-RAF_RS00675;Name=RAF_RS00675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00675
NC_012633.1	Protein Homology	CDS	127380	127592	.	-	0	ID=cds-WP_041471799.1;Parent=gene-RAF_RS00675;Dbxref=GenBank:WP_041471799.1;Name=WP_041471799.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996737.1;locus_tag=RAF_RS00675;product=hypothetical protein;protein_id=WP_041471799.1;transl_table=11
NC_012633.1	RefSeq	gene	127867	128163	.	-	.	ID=gene-RAF_RS00685;Name=RAF_RS00685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00685;old_locus_tag=RAF_ORF0122
NC_012633.1	Protein Homology	CDS	127867	128163	.	-	0	ID=cds-WP_012719384.1;Parent=gene-RAF_RS00685;Dbxref=GenBank:WP_012719384.1;Name=WP_012719384.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719384.1;locus_tag=RAF_RS00685;product=hypothetical protein;protein_id=WP_012719384.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	128471	128963	.	-	.	ID=gene-RAF_RS00695;Name=RAF_RS00695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00695;old_locus_tag=RAF_ORF0123;pseudo=true
NC_012633.1	Protein Homology	CDS	128471	128963	.	-	0	ID=cds-RAF_RS00695;Parent=gene-RAF_RS00695;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976812.1;locus_tag=RAF_RS00695;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	128963	129136	.	-	.	ID=gene-RAF_RS09165;Name=RAF_RS09165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09165
NC_012633.1	Protein Homology	CDS	128963	129136	.	-	0	ID=cds-WP_016769858.1;Parent=gene-RAF_RS09165;Dbxref=GenBank:WP_016769858.1;Name=WP_016769858.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016769858.1;locus_tag=RAF_RS09165;product=hypothetical protein;protein_id=WP_016769858.1;transl_table=11
NC_012633.1	RefSeq	gene	129247	129417	.	-	.	ID=gene-RAF_RS09170;Name=RAF_RS09170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09170
NC_012633.1	Protein Homology	CDS	129247	129417	.	-	0	ID=cds-WP_014410348.1;Parent=gene-RAF_RS09170;Dbxref=GenBank:WP_014410348.1;Name=WP_014410348.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917603.1;locus_tag=RAF_RS09170;product=hypothetical protein;protein_id=WP_014410348.1;transl_table=11
NC_012633.1	RefSeq	gene	129752	130045	.	+	.	ID=gene-RAF_RS00705;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=RAF_RS00705;old_locus_tag=RAF_ORF0124
NC_012633.1	Protein Homology	CDS	129752	130045	.	+	0	ID=cds-WP_004996729.1;Parent=gene-RAF_RS00705;Dbxref=GenBank:WP_004996729.1;Name=WP_004996729.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmB;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996729.1;locus_tag=RAF_RS00705;product=50S ribosomal protein L28;protein_id=WP_004996729.1;transl_table=11
NC_012633.1	RefSeq	gene	130042	130278	.	+	.	ID=gene-RAF_RS00710;Name=rpmE;gbkey=Gene;gene=rpmE;gene_biotype=protein_coding;locus_tag=RAF_RS00710;old_locus_tag=RAF_ORF0125
NC_012633.1	Protein Homology	CDS	130042	130278	.	+	0	ID=cds-WP_004996719.1;Parent=gene-RAF_RS00710;Dbxref=GenBank:WP_004996719.1;Name=WP_004996719.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596473.1;locus_tag=RAF_RS00710;product=50S ribosomal protein L31;protein_id=WP_004996719.1;transl_table=11
NC_012633.1	RefSeq	gene	130479	130555	.	+	.	ID=gene-RAF_RS00715;Name=RAF_RS00715;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS00715;old_locus_tag=RAF_RNA04
NC_012633.1	tRNAscan-SE	tRNA	130479	130555	.	+	.	ID=rna-RAF_RS00715;Parent=gene-RAF_RS00715;anticodon=(pos:130513..130515);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS00715;product=tRNA-Met
NC_012633.1	tRNAscan-SE	exon	130479	130555	.	+	.	ID=exon-RAF_RS00715-1;Parent=rna-RAF_RS00715;anticodon=(pos:130513..130515);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS00715;product=tRNA-Met
NC_012633.1	RefSeq	gene	130886	131524	.	+	.	ID=gene-RAF_RS00720;Name=yihA;gbkey=Gene;gene=yihA;gene_biotype=protein_coding;locus_tag=RAF_RS00720;old_locus_tag=RAF_ORF0126
NC_012633.1	Protein Homology	CDS	130886	131524	.	+	0	ID=cds-WP_012719386.1;Parent=gene-RAF_RS00720;Dbxref=GenBank:WP_012719386.1;Name=WP_012719386.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=yihA;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443435.1;locus_tag=RAF_RS00720;product=ribosome biogenesis GTP-binding protein YihA/YsxC;protein_id=WP_012719386.1;transl_table=11
NC_012633.1	RefSeq	gene	131472	132395	.	+	.	ID=gene-RAF_RS00725;Name=RAF_RS00725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00725;old_locus_tag=RAF_ORF0127
NC_012633.1	Protein Homology	CDS	131472	132395	.	+	0	ID=cds-WP_012719387.1;Parent=gene-RAF_RS00725;Dbxref=GenBank:WP_012719387.1;Name=WP_012719387.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996717.1;locus_tag=RAF_RS00725;product=acetylglutamate kinase;protein_id=WP_012719387.1;transl_table=11
NC_012633.1	RefSeq	gene	132408	132695	.	+	.	ID=gene-RAF_RS00730;Name=RAF_RS00730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00730;old_locus_tag=RAF_ORF0128
NC_012633.1	Protein Homology	CDS	132408	132695	.	+	0	ID=cds-WP_010976817.1;Parent=gene-RAF_RS00730;Dbxref=GenBank:WP_010976817.1;Name=WP_010976817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008579695.1;locus_tag=RAF_RS00730;product=type IV secretion system protein VirB3;protein_id=WP_010976817.1;transl_table=11
NC_012633.1	RefSeq	gene	132785	135202	.	+	.	ID=gene-RAF_RS00735;Name=RAF_RS00735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00735;old_locus_tag=RAF_ORF0129
NC_012633.1	Protein Homology	CDS	132785	135202	.	+	0	ID=cds-WP_012719388.1;Parent=gene-RAF_RS00735;Dbxref=GenBank:WP_012719388.1;Name=WP_012719388.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014391789.1;locus_tag=RAF_RS00735;product=VirB4 family type IV secretion/conjugal transfer ATPase;protein_id=WP_012719388.1;transl_table=11
NC_012633.1	RefSeq	gene	135320	138439	.	+	.	ID=gene-RAF_RS00740;Name=RAF_RS00740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00740;old_locus_tag=RAF_ORF0130
NC_012633.1	Protein Homology	CDS	135320	138439	.	+	0	ID=cds-WP_012719389.1;Parent=gene-RAF_RS00740;Dbxref=GenBank:WP_012719389.1;Name=WP_012719389.1;Ontology_term=GO:0030255;gbkey=CDS;go_process=protein secretion by the type IV secretion system|0030255||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014013853.1;locus_tag=RAF_RS00740;product=type IV secretion system protein;protein_id=WP_012719389.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	138426	140412	.	+	.	ID=gene-RAF_RS00745;Name=RAF_RS00745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00745;old_locus_tag=RAF_ORF0131;pseudo=true
NC_012633.1	Protein Homology	CDS	138426	140412	.	+	0	ID=cds-RAF_RS00745;Parent=gene-RAF_RS00745;Note=frameshifted;Ontology_term=GO:0030255;gbkey=CDS;go_process=protein secretion by the type IV secretion system|0030255||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273171.1;locus_tag=RAF_RS00745;product=type IV secretion system protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	140419	143319	.	+	.	ID=gene-RAF_RS00750;Name=RAF_RS00750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00750;old_locus_tag=RAF_ORF0133
NC_012633.1	Protein Homology	CDS	140419	143319	.	+	0	ID=cds-WP_012719390.1;Parent=gene-RAF_RS00750;Dbxref=GenBank:WP_012719390.1;Name=WP_012719390.1;Ontology_term=GO:0030255;gbkey=CDS;go_process=protein secretion by the type IV secretion system|0030255||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014013855.1;locus_tag=RAF_RS00750;product=type IV secretion system protein;protein_id=WP_012719390.1;transl_table=11
NC_012633.1	RefSeq	gene	143493	146168	.	+	.	ID=gene-RAF_RS00755;Name=RAF_RS00755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00755;old_locus_tag=RAF_ORF0134
NC_012633.1	Protein Homology	CDS	143493	146168	.	+	0	ID=cds-WP_012719391.1;Parent=gene-RAF_RS00755;Dbxref=GenBank:WP_012719391.1;Name=WP_012719391.1;Ontology_term=GO:0030255;gbkey=CDS;go_process=protein secretion by the type IV secretion system|0030255||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014408200.1;locus_tag=RAF_RS00755;product=type IV secretion system protein;protein_id=WP_012719391.1;transl_table=11
NC_012633.1	RefSeq	gene	146321	149782	.	+	.	ID=gene-RAF_RS00760;Name=RAF_RS00760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00760;old_locus_tag=RAF_ORF0135
NC_012633.1	Protein Homology	CDS	146321	149782	.	+	0	ID=cds-WP_012719392.1;Parent=gene-RAF_RS00760;Dbxref=GenBank:WP_012719392.1;Name=WP_012719392.1;Ontology_term=GO:0030255;gbkey=CDS;go_process=protein secretion by the type IV secretion system|0030255||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190503.1;locus_tag=RAF_RS00760;product=type IV secretion system protein;protein_id=WP_012719392.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	150354	151407	.	+	.	ID=gene-RAF_RS00765;Name=RAF_RS00765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00765;old_locus_tag=RAF_ORF0136;pseudo=true
NC_012633.1	Protein Homology	CDS	150354	151407	.	+	0	ID=cds-RAF_RS00765;Parent=gene-RAF_RS00765;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190502.1;locus_tag=RAF_RS00765;product=phosphate acetyltransferase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	pseudogene	151407	152554	.	+	.	ID=gene-RAF_RS00770;Name=RAF_RS00770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00770;old_locus_tag=RAF_ORF0138;pseudo=true
NC_012633.1	Protein Homology	CDS	151407	152554	.	+	0	ID=cds-RAF_RS00770;Parent=gene-RAF_RS00770;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597143.1;locus_tag=RAF_RS00770;product=acetate/propionate family kinase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	152779	152922	.	+	.	ID=gene-RAF_RS09175;Name=RAF_RS09175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09175
NC_012633.1	Protein Homology	CDS	152779	152922	.	+	0	ID=cds-WP_014410359.1;Parent=gene-RAF_RS09175;Dbxref=GenBank:WP_014410359.1;Name=WP_014410359.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410359.1;locus_tag=RAF_RS09175;product=hypothetical protein;protein_id=WP_014410359.1;transl_table=11
NC_012633.1	RefSeq	gene	153126	153830	.	+	.	ID=gene-RAF_RS00780;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=RAF_RS00780;old_locus_tag=RAF_ORF0140
NC_012633.1	Protein Homology	CDS	153126	153830	.	+	0	ID=cds-WP_004996686.1;Parent=gene-RAF_RS00780;Dbxref=GenBank:WP_004996686.1;Name=WP_004996686.1;Ontology_term=GO:0008033,GO:0052906;gbkey=CDS;gene=trmD;go_function=tRNA (guanine(37)-N1)-methyltransferase activity|0052906||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443444.1;locus_tag=RAF_RS00780;product=tRNA (guanosine(37)-N1)-methyltransferase TrmD;protein_id=WP_004996686.1;transl_table=11
NC_012633.1	RefSeq	gene	153848	154264	.	+	.	ID=gene-RAF_RS00785;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;locus_tag=RAF_RS00785;old_locus_tag=RAF_ORF0141
NC_012633.1	Protein Homology	CDS	153848	154264	.	+	0	ID=cds-WP_012719393.1;Parent=gene-RAF_RS00785;Dbxref=GenBank:WP_012719393.1;Name=WP_012719393.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplS;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270454.1;locus_tag=RAF_RS00785;product=50S ribosomal protein L19;protein_id=WP_012719393.1;transl_table=11
NC_012633.1	RefSeq	gene	154434	154670	.	-	.	ID=gene-RAF_RS00790;Name=RAF_RS00790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00790;old_locus_tag=RAF_ORF0142
NC_012633.1	Protein Homology	CDS	154434	154670	.	-	0	ID=cds-WP_004996682.1;Parent=gene-RAF_RS00790;Dbxref=GenBank:WP_004996682.1;Name=WP_004996682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597146.1;locus_tag=RAF_RS00790;product=DUF2312 domain-containing protein;protein_id=WP_004996682.1;transl_table=11
NC_012633.1	RefSeq	gene	154743	155669	.	+	.	ID=gene-RAF_RS00795;Name=secF;gbkey=Gene;gene=secF;gene_biotype=protein_coding;locus_tag=RAF_RS00795;old_locus_tag=RAF_ORF0143
NC_012633.1	Protein Homology	CDS	154743	155669	.	+	0	ID=cds-WP_012719394.1;Parent=gene-RAF_RS00795;Dbxref=GenBank:WP_012719394.1;Name=WP_012719394.1;Ontology_term=GO:0006886,GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secF;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=intracellular protein transport|0006886||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014365240.1;locus_tag=RAF_RS00795;product=protein translocase subunit SecF;protein_id=WP_012719394.1;transl_table=11
NC_012633.1	RefSeq	gene	155834	157099	.	+	.	ID=gene-RAF_RS00800;Name=nuoF;gbkey=Gene;gene=nuoF;gene_biotype=protein_coding;locus_tag=RAF_RS00800;old_locus_tag=RAF_ORF0144
NC_012633.1	Protein Homology	CDS	155834	157099	.	+	0	ID=cds-WP_012719395.1;Parent=gene-RAF_RS00800;Dbxref=GenBank:WP_012719395.1;Name=WP_012719395.1;Ontology_term=GO:0008137,GO:0010181,GO:0051287,GO:0051539;gbkey=CDS;gene=nuoF;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA,FMN binding|0010181||IEA,NAD binding|0051287||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409887.1;locus_tag=RAF_RS00800;product=NADH-quinone oxidoreductase subunit NuoF;protein_id=WP_012719395.1;transl_table=11
NC_012633.1	RefSeq	gene	157283	158083	.	+	.	ID=gene-RAF_RS00805;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=RAF_RS00805;old_locus_tag=RAF_ORF0145
NC_012633.1	Protein Homology	CDS	157283	158083	.	+	0	ID=cds-WP_012719396.1;Parent=gene-RAF_RS00805;Dbxref=GenBank:WP_012719396.1;Name=WP_012719396.1;Ontology_term=GO:0006465,GO:0009306,GO:0004252,GO:0016020;gbkey=CDS;gene=lepB;go_component=membrane|0016020||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273178.1;locus_tag=RAF_RS00805;product=signal peptidase I;protein_id=WP_012719396.1;transl_table=11
NC_012633.1	RefSeq	gene	158083	158766	.	+	.	ID=gene-RAF_RS00810;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=RAF_RS00810;old_locus_tag=RAF_ORF0146
NC_012633.1	Protein Homology	CDS	158083	158766	.	+	0	ID=cds-WP_004996667.1;Parent=gene-RAF_RS00810;Dbxref=GenBank:WP_004996667.1;Name=WP_004996667.1;Ontology_term=GO:0006364,GO:0006396,GO:0003723,GO:0004525;gbkey=CDS;gene=rnc;go_function=RNA binding|0003723||IEA,ribonuclease III activity|0004525||IEA;go_process=rRNA processing|0006364||IEA,RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012148267.1;locus_tag=RAF_RS00810;product=ribonuclease III;protein_id=WP_004996667.1;transl_table=11
NC_012633.1	RefSeq	gene	158759	159778	.	+	.	ID=gene-RAF_RS00815;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;locus_tag=RAF_RS00815;old_locus_tag=RAF_ORF0147
NC_012633.1	Protein Homology	CDS	158759	159778	.	+	0	ID=cds-WP_012719397.1;Parent=gene-RAF_RS00815;Dbxref=GenBank:WP_012719397.1;Name=WP_012719397.1;Ontology_term=GO:0003723,GO:0005525;gbkey=CDS;gene=era;go_function=RNA binding|0003723||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976834.1;locus_tag=RAF_RS00815;product=GTPase Era;protein_id=WP_012719397.1;transl_table=11
NC_012633.1	RefSeq	gene	159895	160368	.	+	.	ID=gene-RAF_RS00820;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=RAF_RS00820;old_locus_tag=RAF_ORF0148
NC_012633.1	Protein Homology	CDS	159895	160368	.	+	0	ID=cds-WP_012719398.1;Parent=gene-RAF_RS00820;Dbxref=GenBank:WP_012719398.1;Name=WP_012719398.1;Ontology_term=GO:0006310,GO:0008821;gbkey=CDS;gene=ruvC;go_function=crossover junction DNA endonuclease activity|0008821||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597152.1;locus_tag=RAF_RS00820;product=crossover junction endodeoxyribonuclease RuvC;protein_id=WP_012719398.1;transl_table=11
NC_012633.1	RefSeq	gene	160370	161062	.	+	.	ID=gene-RAF_RS00825;Name=RAF_RS00825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00825;old_locus_tag=RAF_ORF0149
NC_012633.1	Protein Homology	CDS	160370	161062	.	+	0	ID=cds-WP_012719399.1;Parent=gene-RAF_RS00825;Dbxref=GenBank:WP_012719399.1;Name=WP_012719399.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150377.1;locus_tag=RAF_RS00825;product=RNA methyltransferase;protein_id=WP_012719399.1;transl_table=11
NC_012633.1	RefSeq	gene	161043	161648	.	-	.	ID=gene-RAF_RS09605;Name=RAF_RS09605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09605;old_locus_tag=RAF_ORF0150
NC_012633.1	Protein Homology	CDS	161043	161648	.	-	0	ID=cds-WP_012719400.1;Parent=gene-RAF_RS09605;Dbxref=GenBank:WP_012719400.1;Name=WP_012719400.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719400.1;locus_tag=RAF_RS09605;product=nucleotidyltransferase substrate binding protein;protein_id=WP_012719400.1;transl_table=11
NC_012633.1	RefSeq	gene	161708	162754	.	-	.	ID=gene-RAF_RS00840;Name=RAF_RS00840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00840;old_locus_tag=RAF_ORF0151
NC_012633.1	Protein Homology	CDS	161708	162754	.	-	0	ID=cds-WP_012719401.1;Parent=gene-RAF_RS00840;Dbxref=GenBank:WP_012719401.1;Name=WP_012719401.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016925955.1;locus_tag=RAF_RS00840;product=mitochondrial fission ELM1 family protein;protein_id=WP_012719401.1;transl_table=11
NC_012633.1	RefSeq	gene	162751	163710	.	-	.	ID=gene-RAF_RS00845;Name=RAF_RS00845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00845;old_locus_tag=RAF_ORF0152
NC_012633.1	Protein Homology	CDS	162751	163710	.	-	0	ID=cds-WP_012719402.1;Parent=gene-RAF_RS00845;Dbxref=GenBank:WP_012719402.1;Name=WP_012719402.1;Ontology_term=GO:0016226,GO:0005524,GO:0016887,GO:0046872,GO:0051536,GO:0140663;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,metal ion binding|0046872||IEA,iron-sulfur cluster binding|0051536||IEA,ATP-dependent FeS chaperone activity|0140663||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443456.1;locus_tag=RAF_RS00845;product=Mrp/NBP35 family ATP-binding protein;protein_id=WP_012719402.1;transl_table=11
NC_012633.1	RefSeq	gene	163815	164855	.	+	.	ID=gene-RAF_RS00850;Name=hflK;gbkey=Gene;gene=hflK;gene_biotype=protein_coding;locus_tag=RAF_RS00850;old_locus_tag=RAF_ORF0153
NC_012633.1	Protein Homology	CDS	163815	164855	.	+	0	ID=cds-WP_012719403.1;Parent=gene-RAF_RS00850;Dbxref=GenBank:WP_012719403.1;Name=WP_012719403.1;Ontology_term=GO:0045861,GO:0016020;gbkey=CDS;gene=hflK;go_component=membrane|0016020||IEA;go_process=negative regulation of proteolysis|0045861||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996655.1;locus_tag=RAF_RS00850;product=FtsH protease activity modulator HflK;protein_id=WP_012719403.1;transl_table=11
NC_012633.1	RefSeq	gene	164948	165808	.	+	.	ID=gene-RAF_RS00855;Name=hflC;gbkey=Gene;gene=hflC;gene_biotype=protein_coding;locus_tag=RAF_RS00855;old_locus_tag=RAF_ORF0154
NC_012633.1	Protein Homology	CDS	164948	165808	.	+	0	ID=cds-WP_012719404.1;Parent=gene-RAF_RS00855;Dbxref=GenBank:WP_012719404.1;Name=WP_012719404.1;Ontology_term=GO:0045861,GO:0030288;gbkey=CDS;gene=hflC;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=negative regulation of proteolysis|0045861||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271475.1;locus_tag=RAF_RS00855;product=protease modulator HflC;protein_id=WP_012719404.1;transl_table=11
NC_012633.1	RefSeq	gene	165846	167324	.	+	.	ID=gene-RAF_RS00860;Name=RAF_RS00860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00860;old_locus_tag=RAF_ORF0155
NC_012633.1	Protein Homology	CDS	165846	167324	.	+	0	ID=cds-WP_012719405.1;Parent=gene-RAF_RS00860;Dbxref=GenBank:WP_012719405.1;Name=WP_012719405.1;Ontology_term=GO:0006508,GO:0004252;gbkey=CDS;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917624.1;locus_tag=RAF_RS00860;product=Do family serine endopeptidase;protein_id=WP_012719405.1;transl_table=11
NC_012633.1	RefSeq	gene	167501	168244	.	+	.	ID=gene-RAF_RS00865;Name=RAF_RS00865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00865;old_locus_tag=RAF_ORF0156
NC_012633.1	Protein Homology	CDS	167501	168244	.	+	0	ID=cds-WP_012719406.1;Parent=gene-RAF_RS00865;Dbxref=GenBank:WP_012719406.1;Name=WP_012719406.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150384.1;locus_tag=RAF_RS00865;product=rhodanese domain-containing protein;protein_id=WP_012719406.1;transl_table=11
NC_012633.1	RefSeq	gene	168411	168785	.	+	.	ID=gene-RAF_RS00870;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;locus_tag=RAF_RS00870;old_locus_tag=RAF_ORF0157
NC_012633.1	Protein Homology	CDS	168411	168785	.	+	0	ID=cds-WP_010976843.1;Parent=gene-RAF_RS00870;Dbxref=GenBank:WP_010976843.1;Name=WP_010976843.1;Ontology_term=GO:0006099,GO:0000104,GO:0009055,GO:0045273;gbkey=CDS;gene=sdhC;go_component=respiratory chain complex II (succinate dehydrogenase)|0045273||IEA;go_function=succinate dehydrogenase activity|0000104||IEA,electron transfer activity|0009055||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477827.1;locus_tag=RAF_RS00870;product=succinate dehydrogenase%2C cytochrome b556 subunit;protein_id=WP_010976843.1;transl_table=11
NC_012633.1	RefSeq	gene	168930	169310	.	+	.	ID=gene-RAF_RS00875;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;locus_tag=RAF_RS00875;old_locus_tag=RAF_ORF0158
NC_012633.1	Protein Homology	CDS	168930	169310	.	+	0	ID=cds-WP_012719407.1;Parent=gene-RAF_RS00875;Dbxref=GenBank:WP_012719407.1;Name=WP_012719407.1;Ontology_term=GO:0006099,GO:0000104,GO:0020037,GO:0016020,GO:0045273;gbkey=CDS;gene=sdhD;go_component=membrane|0016020||IEA,respiratory chain complex II (succinate dehydrogenase)|0045273||IEA;go_function=succinate dehydrogenase activity|0000104||IEA,heme binding|0020037||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597167.1;locus_tag=RAF_RS00875;product=succinate dehydrogenase%2C hydrophobic membrane anchor protein;protein_id=WP_012719407.1;transl_table=11
NC_012633.1	RefSeq	gene	169444	171234	.	+	.	ID=gene-RAF_RS00880;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=RAF_RS00880;old_locus_tag=RAF_ORF0159
NC_012633.1	Protein Homology	CDS	169444	171234	.	+	0	ID=cds-WP_012719408.1;Parent=gene-RAF_RS00880;Dbxref=GenBank:WP_012719408.1;Name=WP_012719408.1;Ontology_term=GO:0006099,GO:0016627,GO:0050660;gbkey=CDS;gene=sdhA;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190590.1;locus_tag=RAF_RS00880;product=succinate dehydrogenase flavoprotein subunit;protein_id=WP_012719408.1;transl_table=11
NC_012633.1	RefSeq	gene	171382	172038	.	+	.	ID=gene-RAF_RS00885;Name=RAF_RS00885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00885;old_locus_tag=RAF_ORF0160
NC_012633.1	Protein Homology	CDS	171382	172038	.	+	0	ID=cds-WP_004996648.1;Parent=gene-RAF_RS00885;Dbxref=GenBank:WP_004996648.1;Name=WP_004996648.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190591.1;locus_tag=RAF_RS00885;product=amino acid ABC transporter permease;protein_id=WP_004996648.1;transl_table=11
NC_012633.1	RefSeq	gene	172199	172588	.	+	.	ID=gene-RAF_RS00890;Name=rpsL;gbkey=Gene;gene=rpsL;gene_biotype=protein_coding;locus_tag=RAF_RS00890;old_locus_tag=RAF_ORF0161
NC_012633.1	Protein Homology	CDS	172199	172588	.	+	0	ID=cds-WP_004996647.1;Parent=gene-RAF_RS00890;Dbxref=GenBank:WP_004996647.1;Name=WP_004996647.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsL;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597174.1;locus_tag=RAF_RS00890;product=30S ribosomal protein S12;protein_id=WP_004996647.1;transl_table=11
NC_012633.1	RefSeq	gene	172615	173097	.	+	.	ID=gene-RAF_RS00895;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;locus_tag=RAF_RS00895;old_locus_tag=RAF_ORF0162
NC_012633.1	Protein Homology	CDS	172615	173097	.	+	0	ID=cds-WP_004996646.1;Parent=gene-RAF_RS00895;Dbxref=GenBank:WP_004996646.1;Name=WP_004996646.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsG;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443465.1;locus_tag=RAF_RS00895;product=30S ribosomal protein S7;protein_id=WP_004996646.1;transl_table=11
NC_012633.1	RefSeq	gene	173109	175208	.	+	.	ID=gene-RAF_RS00900;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=RAF_RS00900;old_locus_tag=RAF_ORF0163
NC_012633.1	Protein Homology	CDS	173109	175208	.	+	0	ID=cds-WP_012719409.1;Parent=gene-RAF_RS00900;Dbxref=GenBank:WP_012719409.1;Name=WP_012719409.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;gbkey=CDS;gene=fusA;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010423925.1;locus_tag=RAF_RS00900;product=elongation factor G;protein_id=WP_012719409.1;transl_table=11
NC_012633.1	RefSeq	gene	175356	175431	.	+	.	ID=gene-RAF_RS00905;Name=RAF_RS00905;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS00905;old_locus_tag=RAF_RNA05
NC_012633.1	tRNAscan-SE	tRNA	175356	175431	.	+	.	ID=rna-RAF_RS00905;Parent=gene-RAF_RS00905;anticodon=(pos:175389..175391);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS00905;product=tRNA-Trp
NC_012633.1	tRNAscan-SE	exon	175356	175431	.	+	.	ID=exon-RAF_RS00905-1;Parent=rna-RAF_RS00905;anticodon=(pos:175389..175391);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS00905;product=tRNA-Trp
NC_012633.1	RefSeq	gene	175628	175828	.	+	.	ID=gene-RAF_RS00910;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=RAF_RS00910;old_locus_tag=RAF_ORF0164
NC_012633.1	Protein Homology	CDS	175628	175828	.	+	0	ID=cds-WP_004996644.1;Parent=gene-RAF_RS00910;Dbxref=GenBank:WP_004996644.1;Name=WP_004996644.1;Ontology_term=GO:0009306,GO:0043952,GO:0015450,GO:0005886;gbkey=CDS;gene=secE;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein secretion|0009306||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190595.1;locus_tag=RAF_RS00910;product=preprotein translocase subunit SecE;protein_id=WP_004996644.1;transl_table=11
NC_012633.1	RefSeq	gene	175844	176422	.	+	.	ID=gene-RAF_RS00915;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=RAF_RS00915;old_locus_tag=RAF_ORF0165
NC_012633.1	Protein Homology	CDS	175844	176422	.	+	0	ID=cds-WP_012719410.1;Parent=gene-RAF_RS00915;Dbxref=GenBank:WP_012719410.1;Name=WP_012719410.1;Ontology_term=GO:0032784;gbkey=CDS;gene=nusG;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477817.1;locus_tag=RAF_RS00915;product=transcription termination/antitermination protein NusG;protein_id=WP_012719410.1;transl_table=11
NC_012633.1	RefSeq	gene	176694	177131	.	+	.	ID=gene-RAF_RS00920;Name=rplK;gbkey=Gene;gene=rplK;gene_biotype=protein_coding;locus_tag=RAF_RS00920;old_locus_tag=RAF_ORF0166
NC_012633.1	Protein Homology	CDS	176694	177131	.	+	0	ID=cds-WP_004996639.1;Parent=gene-RAF_RS00920;Dbxref=GenBank:WP_004996639.1;Name=WP_004996639.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597179.1;locus_tag=RAF_RS00920;product=50S ribosomal protein L11;protein_id=WP_004996639.1;transl_table=11
NC_012633.1	RefSeq	gene	177137	177856	.	+	.	ID=gene-RAF_RS00925;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;locus_tag=RAF_RS00925;old_locus_tag=RAF_ORF0167
NC_012633.1	Protein Homology	CDS	177137	177856	.	+	0	ID=cds-WP_004996637.1;Parent=gene-RAF_RS00925;Dbxref=GenBank:WP_004996637.1;Name=WP_004996637.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0015934;gbkey=CDS;gene=rplA;go_component=large ribosomal subunit|0015934||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477815.1;locus_tag=RAF_RS00925;product=50S ribosomal protein L1;protein_id=WP_004996637.1;transl_table=11
NC_012633.1	RefSeq	gene	177967	178476	.	+	.	ID=gene-RAF_RS00930;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=RAF_RS00930;old_locus_tag=RAF_ORF0168
NC_012633.1	Protein Homology	CDS	177967	178476	.	+	0	ID=cds-WP_004996634.1;Parent=gene-RAF_RS00930;Dbxref=GenBank:WP_004996634.1;Name=WP_004996634.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplJ;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477814.1;locus_tag=RAF_RS00930;product=50S ribosomal protein L10;protein_id=WP_004996634.1;transl_table=11
NC_012633.1	RefSeq	gene	178676	179053	.	+	.	ID=gene-RAF_RS00935;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=RAF_RS00935;old_locus_tag=RAF_ORF0169
NC_012633.1	Protein Homology	CDS	178676	179053	.	+	0	ID=cds-WP_012719411.1;Parent=gene-RAF_RS00935;Dbxref=GenBank:WP_012719411.1;Name=WP_012719411.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplL;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597183.1;locus_tag=RAF_RS00935;product=50S ribosomal protein L7/L12;protein_id=WP_012719411.1;transl_table=11
NC_012633.1	RefSeq	gene	179998	184119	.	+	.	ID=gene-RAF_RS00940;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=RAF_RS00940;old_locus_tag=RAF_ORF0170
NC_012633.1	Protein Homology	CDS	179998	184119	.	+	0	ID=cds-WP_012719412.1;Parent=gene-RAF_RS00940;Dbxref=GenBank:WP_012719412.1;Name=WP_012719412.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899;gbkey=CDS;gene=rpoB;go_function=DNA binding|0003677||IEA,DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014391851.1;locus_tag=RAF_RS00940;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_012719412.1;transl_table=11
NC_012633.1	RefSeq	gene	184377	188495	.	+	.	ID=gene-RAF_RS00945;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;locus_tag=RAF_RS00945;old_locus_tag=RAF_ORF0171
NC_012633.1	Protein Homology	CDS	184377	188495	.	+	0	ID=cds-WP_012719413.1;Parent=gene-RAF_RS00945;Dbxref=GenBank:WP_012719413.1;Name=WP_012719413.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899;gbkey=CDS;gene=rpoC;go_function=DNA binding|0003677||IEA,DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443358.1;locus_tag=RAF_RS00945;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_012719413.1;transl_table=11
NC_012633.1	RefSeq	gene	188902	190071	.	-	.	ID=gene-RAF_RS00950;Name=RAF_RS00950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00950;old_locus_tag=RAF_ORF0172
NC_012633.1	Protein Homology	CDS	188902	190071	.	-	0	ID=cds-WP_012719414.1;Parent=gene-RAF_RS00950;Dbxref=GenBank:WP_012719414.1;Name=WP_012719414.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728172.1;locus_tag=RAF_RS00950;product=palindromic element RPE1 domain-containing protein;protein_id=WP_012719414.1;transl_table=11
NC_012633.1	RefSeq	gene	190240	191742	.	+	.	ID=gene-RAF_RS00955;Name=RAF_RS00955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00955;old_locus_tag=RAF_ORF0173
NC_012633.1	Protein Homology	CDS	190240	191742	.	+	0	ID=cds-WP_010976854.1;Parent=gene-RAF_RS00955;Dbxref=GenBank:WP_010976854.1;Name=WP_010976854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443361.1;locus_tag=RAF_RS00955;product=leucyl aminopeptidase;protein_id=WP_010976854.1;transl_table=11
NC_012633.1	RefSeq	gene	191961	192761	.	+	.	ID=gene-RAF_RS00960;Name=RAF_RS00960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00960;old_locus_tag=RAF_ORF0174
NC_012633.1	Protein Homology	CDS	191961	192761	.	+	0	ID=cds-WP_004996620.1;Parent=gene-RAF_RS00960;Dbxref=GenBank:WP_004996620.1;Name=WP_004996620.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443362.1;locus_tag=RAF_RS00960;product=division plane positioning ATPase MipZ;protein_id=WP_004996620.1;transl_table=11
NC_012633.1	RefSeq	gene	192844	193278	.	+	.	ID=gene-RAF_RS00965;Name=RAF_RS00965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00965;old_locus_tag=RAF_ORF0175
NC_012633.1	Protein Homology	CDS	192844	193278	.	+	0	ID=cds-WP_004996619.1;Parent=gene-RAF_RS00965;Dbxref=GenBank:WP_004996619.1;Name=WP_004996619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599761.1;locus_tag=RAF_RS00965;product=DUF3106 domain-containing protein;protein_id=WP_004996619.1;transl_table=11
NC_012633.1	RefSeq	gene	193369	195177	.	+	.	ID=gene-RAF_RS00970;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=protein_coding;locus_tag=RAF_RS00970;old_locus_tag=RAF_ORF0176
NC_012633.1	Protein Homology	CDS	193369	195177	.	+	0	ID=cds-WP_012719415.1;Parent=gene-RAF_RS00970;Dbxref=GenBank:WP_012719415.1;Name=WP_012719415.1;Ontology_term=GO:0006418,GO:0000166,GO:0004812,GO:0005524,GO:0016874;gbkey=CDS;gene=aspS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419701.1;locus_tag=RAF_RS00970;product=aspartate--tRNA ligase;protein_id=WP_012719415.1;transl_table=11
NC_012633.1	RefSeq	gene	195455	197569	.	-	.	ID=gene-RAF_RS00975;Name=RAF_RS00975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00975;old_locus_tag=RAF_ORF0177
NC_012633.1	Protein Homology	CDS	195455	197569	.	-	0	ID=cds-WP_012719416.1;Parent=gene-RAF_RS00975;Dbxref=GenBank:WP_012719416.1;Name=WP_012719416.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976857.1;locus_tag=RAF_RS00975;product=hypothetical protein;protein_id=WP_012719416.1;transl_table=11
NC_012633.1	RefSeq	gene	197953	198663	.	-	.	ID=gene-RAF_RS00980;Name=RAF_RS00980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00980;old_locus_tag=RAF_ORF0178
NC_012633.1	Protein Homology	CDS	197953	198663	.	-	0	ID=cds-WP_012719417.1;Parent=gene-RAF_RS00980;Dbxref=GenBank:WP_012719417.1;Name=WP_012719417.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014408234.1;locus_tag=RAF_RS00980;product=Bax inhibitor-1/YccA family protein;protein_id=WP_012719417.1;transl_table=11
NC_012633.1	RefSeq	gene	198737	199456	.	-	.	ID=gene-RAF_RS00985;Name=dapB;gbkey=Gene;gene=dapB;gene_biotype=protein_coding;locus_tag=RAF_RS00985;old_locus_tag=RAF_ORF0179
NC_012633.1	Protein Homology	CDS	198737	199456	.	-	0	ID=cds-WP_012719418.1;Parent=gene-RAF_RS00985;Dbxref=GenBank:WP_012719418.1;Name=WP_012719418.1;Ontology_term=GO:0009089,GO:0008839;gbkey=CDS;gene=dapB;go_function=4-hydroxy-tetrahydrodipicolinate reductase|0008839||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190609.1;locus_tag=RAF_RS00985;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=WP_012719418.1;transl_table=11
NC_012633.1	RefSeq	gene	199478	199957	.	-	.	ID=gene-RAF_RS00990;Name=RAF_RS00990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00990;old_locus_tag=RAF_ORF0180
NC_012633.1	Protein Homology	CDS	199478	199957	.	-	0	ID=cds-WP_010976860.1;Parent=gene-RAF_RS00990;Dbxref=GenBank:WP_010976860.1;Name=WP_010976860.1;Ontology_term=GO:0010181,GO:0016491,GO:0016646;gbkey=CDS;go_function=FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA,oxidoreductase activity%2C acting on the CH-NH group of donors%2C NAD or NADP as acceptor|0016646||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443367.1;locus_tag=RAF_RS00990;product=flavin reductase family protein;protein_id=WP_010976860.1;transl_table=11
NC_012633.1	RefSeq	gene	199942	200667	.	-	.	ID=gene-RAF_RS00995;Name=RAF_RS00995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00995;old_locus_tag=RAF_ORF0181
NC_012633.1	Protein Homology	CDS	199942	200667	.	-	0	ID=cds-WP_010976861.1;Parent=gene-RAF_RS00995;Dbxref=GenBank:WP_010976861.1;Name=WP_010976861.1;Ontology_term=GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273202.1;locus_tag=RAF_RS00995;product=ABC transporter substrate-binding protein;protein_id=WP_010976861.1;transl_table=11
NC_012633.1	RefSeq	gene	200878	202329	.	-	.	ID=gene-RAF_RS01000;Name=gatB;gbkey=Gene;gene=gatB;gene_biotype=protein_coding;locus_tag=RAF_RS01000;old_locus_tag=RAF_ORF0182
NC_012633.1	Protein Homology	CDS	200878	202329	.	-	0	ID=cds-WP_012719419.1;Parent=gene-RAF_RS01000;Dbxref=GenBank:WP_012719419.1;Name=WP_012719419.1;Ontology_term=GO:0016884;gbkey=CDS;gene=gatB;go_function=carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor|0016884||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190612.1;locus_tag=RAF_RS01000;product=Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB;protein_id=WP_012719419.1;transl_table=11
NC_012633.1	RefSeq	gene	202332	203813	.	-	.	ID=gene-RAF_RS01005;Name=gatA;gbkey=Gene;gene=gatA;gene_biotype=protein_coding;locus_tag=RAF_RS01005;old_locus_tag=RAF_ORF0183
NC_012633.1	Protein Homology	CDS	202332	203813	.	-	0	ID=cds-WP_012719420.1;Parent=gene-RAF_RS01005;Dbxref=GenBank:WP_012719420.1;Name=WP_012719420.1;Ontology_term=GO:0006412,GO:0006424,GO:0050567,GO:0030956;gbkey=CDS;gene=gatA;go_component=glutamyl-tRNA(Gln) amidotransferase complex|0030956||IEA;go_function=glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity|0050567||IEA;go_process=translation|0006412||IEA,glutamyl-tRNA aminoacylation|0006424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597217.1;locus_tag=RAF_RS01005;product=Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA;protein_id=WP_012719420.1;transl_table=11
NC_012633.1	RefSeq	gene	203816	204118	.	-	.	ID=gene-RAF_RS01010;Name=gatC;gbkey=Gene;gene=gatC;gene_biotype=protein_coding;locus_tag=RAF_RS01010;old_locus_tag=RAF_ORF0184
NC_012633.1	Protein Homology	CDS	203816	204118	.	-	0	ID=cds-WP_012719421.1;Parent=gene-RAF_RS01010;Dbxref=GenBank:WP_012719421.1;Name=WP_012719421.1;Ontology_term=GO:0006424,GO:0006450,GO:0050567,GO:0030956;gbkey=CDS;gene=gatC;go_component=glutamyl-tRNA(Gln) amidotransferase complex|0030956||IEA;go_function=glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity|0050567||IEA;go_process=glutamyl-tRNA aminoacylation|0006424||IEA,regulation of translational fidelity|0006450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012148306.1;locus_tag=RAF_RS01010;product=Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC;protein_id=WP_012719421.1;transl_table=11
NC_012633.1	RefSeq	gene	204292	204426	.	-	.	ID=gene-RAF_RS10265;Name=RAF_RS10265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10265
NC_012633.1	GeneMarkS-2+	CDS	204292	204426	.	-	0	ID=cds-WP_268738931.1;Parent=gene-RAF_RS10265;Dbxref=GenBank:WP_268738931.1;Name=WP_268738931.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10265;product=hypothetical protein;protein_id=WP_268738931.1;transl_table=11
NC_012633.1	RefSeq	gene	204420	204593	.	-	.	ID=gene-RAF_RS09185;Name=RAF_RS09185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09185;old_locus_tag=RAF_ORF0185
NC_012633.1	Protein Homology	CDS	204420	204593	.	-	0	ID=cds-WP_012719422.1;Parent=gene-RAF_RS09185;Dbxref=GenBank:WP_012719422.1;Name=WP_012719422.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719422.1;locus_tag=RAF_RS09185;product=hypothetical protein;protein_id=WP_012719422.1;transl_table=11
NC_012633.1	RefSeq	gene	204908	205468	.	-	.	ID=gene-RAF_RS01015;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=RAF_RS01015;old_locus_tag=RAF_ORF0186
NC_012633.1	Protein Homology	CDS	204908	205468	.	-	0	ID=cds-WP_012719423.1;Parent=gene-RAF_RS01015;Dbxref=GenBank:WP_012719423.1;Name=WP_012719423.1;Ontology_term=GO:0006412,GO:0008135;gbkey=CDS;gene=frr;go_function=translation factor activity%2C RNA binding|0008135||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976866.1;locus_tag=RAF_RS01015;product=ribosome recycling factor;protein_id=WP_012719423.1;transl_table=11
NC_012633.1	RefSeq	gene	205757	206485	.	-	.	ID=gene-RAF_RS01020;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;locus_tag=RAF_RS01020;old_locus_tag=RAF_ORF0187
NC_012633.1	Protein Homology	CDS	205757	206485	.	-	0	ID=cds-WP_012719424.1;Parent=gene-RAF_RS01020;Dbxref=GenBank:WP_012719424.1;Name=WP_012719424.1;Ontology_term=GO:0006221,GO:0015949,GO:0033862,GO:0005737;gbkey=CDS;gene=pyrH;go_component=cytoplasm|0005737||IEA;go_function=UMP kinase activity|0033862||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA,nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719424.1;locus_tag=RAF_RS01020;product=UMP kinase;protein_id=WP_012719424.1;transl_table=11
NC_012633.1	RefSeq	gene	206494	206817	.	-	.	ID=gene-RAF_RS01025;Name=RAF_RS01025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01025;old_locus_tag=RAF_ORF0188
NC_012633.1	Protein Homology	CDS	206494	206817	.	-	0	ID=cds-WP_004996606.1;Parent=gene-RAF_RS01025;Dbxref=GenBank:WP_004996606.1;Name=WP_004996606.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014365278.1;locus_tag=RAF_RS01025;product=monovalent cation/H+ antiporter subunit E;protein_id=WP_004996606.1;transl_table=11
NC_012633.1	RefSeq	gene	206801	208360	.	-	.	ID=gene-RAF_RS01030;Name=RAF_RS01030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01030;old_locus_tag=RAF_ORF0189
NC_012633.1	Protein Homology	CDS	206801	208360	.	-	0	ID=cds-WP_012719425.1;Parent=gene-RAF_RS01030;Dbxref=GenBank:WP_012719425.1;Name=WP_012719425.1;Ontology_term=GO:0006855,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=xenobiotic transmembrane transport|0006855||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443375.1;locus_tag=RAF_RS01030;product=DHA2 family efflux MFS transporter permease subunit;protein_id=WP_012719425.1;transl_table=11
NC_012633.1	RefSeq	gene	208592	208795	.	+	.	ID=gene-RAF_RS01035;Name=RAF_RS01035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01035;old_locus_tag=RAF_ORF0190
NC_012633.1	Protein Homology	CDS	208592	208795	.	+	0	ID=cds-WP_004996604.1;Parent=gene-RAF_RS01035;Dbxref=GenBank:WP_004996604.1;Name=WP_004996604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004595874.1;locus_tag=RAF_RS01035;product=DUF2674 domain-containing protein;protein_id=WP_004996604.1;transl_table=11
NC_012633.1	RefSeq	gene	209171	209356	.	-	.	ID=gene-RAF_RS01040;Name=RAF_RS01040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01040;old_locus_tag=RAF_ORF0191
NC_012633.1	Protein Homology	CDS	209171	209356	.	-	0	ID=cds-WP_041471800.1;Parent=gene-RAF_RS01040;Dbxref=GenBank:WP_041471800.1;Name=WP_041471800.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150416.1;locus_tag=RAF_RS01040;product=hypothetical protein;protein_id=WP_041471800.1;transl_table=11
NC_012633.1	RefSeq	gene	209421	210008	.	-	.	ID=gene-RAF_RS01045;Name=RAF_RS01045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01045;old_locus_tag=RAF_ORF0192
NC_012633.1	Protein Homology	CDS	209421	210008	.	-	0	ID=cds-WP_012719427.1;Parent=gene-RAF_RS01045;Dbxref=GenBank:WP_012719427.1;Name=WP_012719427.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719427.1;locus_tag=RAF_RS01045;product=hypothetical protein;protein_id=WP_012719427.1;transl_table=11
NC_012633.1	RefSeq	gene	210458	210533	.	-	.	ID=gene-RAF_RS01050;Name=RAF_RS01050;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS01050;old_locus_tag=RAF_RNA06
NC_012633.1	tRNAscan-SE	tRNA	210458	210533	.	-	.	ID=rna-RAF_RS01050;Parent=gene-RAF_RS01050;anticodon=(pos:complement(210498..210500));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS01050;product=tRNA-Thr
NC_012633.1	tRNAscan-SE	exon	210458	210533	.	-	.	ID=exon-RAF_RS01050-1;Parent=rna-RAF_RS01050;anticodon=(pos:complement(210498..210500));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS01050;product=tRNA-Thr
NC_012633.1	RefSeq	gene	210706	213012	.	-	.	ID=gene-RAF_RS01055;Name=bamA;gbkey=Gene;gene=bamA;gene_biotype=protein_coding;locus_tag=RAF_RS01055;old_locus_tag=RAF_ORF0193
NC_012633.1	Protein Homology	CDS	210706	213012	.	-	0	ID=cds-WP_012719428.1;Parent=gene-RAF_RS01055;Dbxref=GenBank:WP_012719428.1;Name=WP_012719428.1;Ontology_term=GO:0071709,GO:0009279;gbkey=CDS;gene=bamA;go_component=cell outer membrane|0009279||IEA;go_process=membrane assembly|0071709||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443377.1;locus_tag=RAF_RS01055;product=outer membrane protein assembly factor BamA;protein_id=WP_012719428.1;transl_table=11
NC_012633.1	RefSeq	gene	213251	214324	.	-	.	ID=gene-RAF_RS01060;Name=rseP;gbkey=Gene;gene=rseP;gene_biotype=protein_coding;locus_tag=RAF_RS01060;old_locus_tag=RAF_ORF0194
NC_012633.1	Protein Homology	CDS	213251	214324	.	-	0	ID=cds-WP_012719429.1;Parent=gene-RAF_RS01060;Dbxref=GenBank:WP_012719429.1;Name=WP_012719429.1;Ontology_term=GO:0006508,GO:0004222,GO:0016020;gbkey=CDS;gene=rseP;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443378.1;locus_tag=RAF_RS01060;product=RIP metalloprotease RseP;protein_id=WP_012719429.1;transl_table=11
NC_012633.1	RefSeq	gene	214606	215076	.	+	.	ID=gene-RAF_RS01065;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=RAF_RS01065;old_locus_tag=RAF_ORF0195
NC_012633.1	Protein Homology	CDS	214606	215076	.	+	0	ID=cds-WP_004996600.1;Parent=gene-RAF_RS01065;Dbxref=GenBank:WP_004996600.1;Name=WP_004996600.1;Ontology_term=GO:0006353;gbkey=CDS;gene=nusB;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976871.1;locus_tag=RAF_RS01065;product=transcription antitermination factor NusB;protein_id=WP_004996600.1;transl_table=11
NC_012633.1	RefSeq	gene	215211	215894	.	+	.	ID=gene-RAF_RS01070;Name=RAF_RS01070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01070;old_locus_tag=RAF_ORF0196
NC_012633.1	Protein Homology	CDS	215211	215894	.	+	0	ID=cds-WP_012719430.1;Parent=gene-RAF_RS01070;Dbxref=GenBank:WP_012719430.1;Name=WP_012719430.1;Ontology_term=GO:0001510,GO:0008168,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=RNA methylation|0001510||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477779.1;locus_tag=RAF_RS01070;product=RlmE family RNA methyltransferase;protein_id=WP_012719430.1;transl_table=11
NC_012633.1	RefSeq	gene	215945	217006	.	-	.	ID=gene-RAF_RS01075;Name=RAF_RS01075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01075;old_locus_tag=RAF_ORF0197
NC_012633.1	Protein Homology	CDS	215945	217006	.	-	0	ID=cds-WP_012719431.1;Parent=gene-RAF_RS01075;Dbxref=GenBank:WP_012719431.1;Name=WP_012719431.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016925987.1;locus_tag=RAF_RS01075;product=hypothetical protein;protein_id=WP_012719431.1;transl_table=11
NC_012633.1	RefSeq	gene	217171	218124	.	+	.	ID=gene-RAF_RS01080;Name=RAF_RS01080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01080;old_locus_tag=RAF_ORF0198
NC_012633.1	Protein Homology	CDS	217171	218124	.	+	0	ID=cds-WP_012719432.1;Parent=gene-RAF_RS01080;Dbxref=GenBank:WP_012719432.1;Name=WP_012719432.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719432.1;locus_tag=RAF_RS01080;product=hypothetical protein;protein_id=WP_012719432.1;transl_table=11
NC_012633.1	RefSeq	gene	218183	218623	.	-	.	ID=gene-RAF_RS01085;Name=RAF_RS01085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01085;old_locus_tag=RAF_ORF0199
NC_012633.1	Protein Homology	CDS	218183	218623	.	-	0	ID=cds-WP_012719433.1;Parent=gene-RAF_RS01085;Dbxref=GenBank:WP_012719433.1;Name=WP_012719433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945467.1;locus_tag=RAF_RS01085;product=type II toxin-antitoxin system RatA family toxin;protein_id=WP_012719433.1;transl_table=11
NC_012633.1	RefSeq	gene	218623	218904	.	-	.	ID=gene-RAF_RS01090;Name=RAF_RS01090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01090;old_locus_tag=RAF_ORF0200
NC_012633.1	Protein Homology	CDS	218623	218904	.	-	0	ID=cds-WP_004996593.1;Parent=gene-RAF_RS01090;Dbxref=GenBank:WP_004996593.1;Name=WP_004996593.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443384.1;locus_tag=RAF_RS01090;product=DUF1674 domain-containing protein;protein_id=WP_004996593.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	218917	219650	.	+	.	ID=gene-RAF_RS01095;Name=RAF_RS01095;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01095;old_locus_tag=RAF_ORF0201;pseudo=true
NC_012633.1	Protein Homology	CDS	218917	219650	.	+	0	ID=cds-RAF_RS01095;Parent=gene-RAF_RS01095;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996584.1;locus_tag=RAF_RS01095;product=16S rRNA (uracil(1498)-N(3))-methyltransferase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	219739	219975	.	-	.	ID=gene-RAF_RS01100;Name=RAF_RS01100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01100;old_locus_tag=RAF_ORF0202
NC_012633.1	Protein Homology	CDS	219739	219975	.	-	0	ID=cds-WP_012150427.1;Parent=gene-RAF_RS01100;Dbxref=GenBank:WP_012150427.1;Name=WP_012150427.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150427.1;locus_tag=RAF_RS01100;product=DUF378 domain-containing protein;protein_id=WP_012150427.1;transl_table=11
NC_012633.1	RefSeq	gene	220230	223256	.	-	.	ID=gene-RAF_RS01105;Name=RAF_RS01105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01105;old_locus_tag=RAF_ORF0203
NC_012633.1	Protein Homology	CDS	220230	223256	.	-	0	ID=cds-WP_012719435.1;Parent=gene-RAF_RS01105;Dbxref=GenBank:WP_012719435.1;Name=WP_012719435.1;Ontology_term=GO:0042908,GO:0015562,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA,transmembrane transporter activity|0022857||IEA;go_process=xenobiotic transport|0042908||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271419.1;locus_tag=RAF_RS01105;product=efflux RND transporter permease subunit;protein_id=WP_012719435.1;transl_table=11
NC_012633.1	RefSeq	gene	223732	224064	.	+	.	ID=gene-RAF_RS01110;Name=RAF_RS01110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01110;old_locus_tag=RAF_ORF0204
NC_012633.1	Protein Homology	CDS	223732	224064	.	+	0	ID=cds-WP_041471801.1;Parent=gene-RAF_RS01110;Dbxref=GenBank:WP_041471801.1;Name=WP_041471801.1;Ontology_term=GO:0030261,GO:0003677,GO:0030527;gbkey=CDS;go_function=DNA binding|0003677||IEA,structural constituent of chromatin|0030527||IEA;go_process=chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443309.1;locus_tag=RAF_RS01110;product=HU family DNA-binding protein;protein_id=WP_041471801.1;transl_table=11
NC_012633.1	RefSeq	gene	224204	225013	.	+	.	ID=gene-RAF_RS01115;Name=RAF_RS01115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01115;old_locus_tag=RAF_ORF0205
NC_012633.1	Protein Homology	CDS	224204	225013	.	+	0	ID=cds-WP_010976879.1;Parent=gene-RAF_RS01115;Dbxref=GenBank:WP_010976879.1;Name=WP_010976879.1;Note=catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016916939.1;locus_tag=RAF_RS01115;product=DNA polymerase III subunit delta';protein_id=WP_010976879.1;transl_table=11
NC_012633.1	RefSeq	gene	225220	226569	.	+	.	ID=gene-RAF_RS01120;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;locus_tag=RAF_RS01120;old_locus_tag=RAF_ORF0206
NC_012633.1	Protein Homology	CDS	225220	226569	.	+	0	ID=cds-WP_012719438.1;Parent=gene-RAF_RS01120;Dbxref=GenBank:WP_012719438.1;Name=WP_012719438.1;Ontology_term=GO:0009306,GO:0003924,GO:0005048,GO:0005525,GO:0048501;gbkey=CDS;gene=ffh;go_component=signal recognition particle%2C plasma membrane targeting|0048501||IEA;go_function=GTPase activity|0003924||IEA,signal sequence binding|0005048||IEA,GTP binding|0005525||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443311.1;locus_tag=RAF_RS01120;product=signal recognition particle protein;protein_id=WP_012719438.1;transl_table=11
NC_012633.1	RefSeq	gene	227218	227529	.	-	.	ID=gene-RAF_RS10485;Name=RAF_RS10485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10485
NC_012633.1	Protein Homology	CDS	227218	227529	.	-	0	ID=cds-WP_327203428.1;Parent=gene-RAF_RS10485;Dbxref=GenBank:WP_327203428.1;Name=WP_327203428.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: protein motif:HMM:NF012546.5;locus_tag=RAF_RS10485;product=prolyl oligopeptidase family serine peptidase;protein_id=WP_327203428.1;transl_table=11
NC_012633.1	RefSeq	gene	227596	227961	.	-	.	ID=gene-RAF_RS10490;Name=RAF_RS10490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10490
NC_012633.1	Protein Homology	CDS	227596	227961	.	-	0	ID=cds-WP_004996570.1;Parent=gene-RAF_RS10490;Dbxref=GenBank:WP_004996570.1;Name=WP_004996570.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362777.1;locus_tag=RAF_RS10490;product=prolyl oligopeptidase family protein;protein_id=WP_004996570.1;transl_table=11
NC_012633.1	RefSeq	gene	228574	229134	.	-	.	ID=gene-RAF_RS10495;Name=RAF_RS10495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10495
NC_012633.1	Protein Homology	CDS	228574	229134	.	-	0	ID=cds-WP_041471803.1;Parent=gene-RAF_RS10495;Dbxref=GenBank:WP_041471803.1;Name=WP_041471803.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976883.1;locus_tag=RAF_RS10495;product=S9 family peptidase;protein_id=WP_041471803.1;transl_table=11
NC_012633.1	RefSeq	gene	229311	230513	.	+	.	ID=gene-RAF_RS01150;Name=hemW;gbkey=Gene;gene=hemW;gene_biotype=protein_coding;locus_tag=RAF_RS01150;old_locus_tag=RAF_ORF0212
NC_012633.1	Protein Homology	CDS	229311	230513	.	+	0	ID=cds-WP_012719439.1;Parent=gene-RAF_RS01150;Dbxref=GenBank:WP_012719439.1;Name=WP_012719439.1;Ontology_term=GO:0006779,GO:0051539,GO:0051989,GO:0005737;gbkey=CDS;gene=hemW;go_component=cytoplasm|0005737||IEA;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,coproporphyrinogen dehydrogenase activity|0051989||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996567.1;locus_tag=RAF_RS01150;product=radical SAM family heme chaperone HemW;protein_id=WP_012719439.1;transl_table=11
NC_012633.1	RefSeq	gene	230735	231121	.	+	.	ID=gene-RAF_RS01155;Name=RAF_RS01155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01155;old_locus_tag=RAF_ORF0213
NC_012633.1	Protein Homology	CDS	230735	231121	.	+	0	ID=cds-WP_012719440.1;Parent=gene-RAF_RS01155;Dbxref=GenBank:WP_012719440.1;Name=WP_012719440.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719440.1;locus_tag=RAF_RS01155;product=ankyrin repeat domain-containing protein;protein_id=WP_012719440.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	231674	231861	.	-	.	ID=gene-RAF_RS10500;Name=RAF_RS10500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10500;pseudo=true
NC_012633.1	Protein Homology	CDS	231674	231861	.	-	0	ID=cds-RAF_RS10500;Parent=gene-RAF_RS10500;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830646.1;locus_tag=RAF_RS10500;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	232187	232372	.	-	.	ID=gene-RAF_RS01175;Name=RAF_RS01175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01175
NC_012633.1	Protein Homology	CDS	232187	232372	.	-	0	ID=cds-WP_014013930.1;Parent=gene-RAF_RS01175;Dbxref=GenBank:WP_014013930.1;Name=WP_014013930.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014013930.1;locus_tag=RAF_RS01175;product=hypothetical protein;protein_id=WP_014013930.1;transl_table=11
NC_012633.1	RefSeq	gene	232426	233625	.	-	.	ID=gene-RAF_RS01180;Name=RAF_RS01180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01180;old_locus_tag=RAF_ORF0215
NC_012633.1	Protein Homology	CDS	232426	233625	.	-	0	ID=cds-WP_012719442.1;Parent=gene-RAF_RS01180;Dbxref=GenBank:WP_012719442.1;Name=WP_012719442.1;Ontology_term=GO:0015293,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA,transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443325.1;locus_tag=RAF_RS01180;product=dicarboxylate/amino acid:cation symporter;protein_id=WP_012719442.1;transl_table=11
NC_012633.1	RefSeq	gene	233666	233980	.	-	.	ID=gene-RAF_RS01185;Name=cutA;gbkey=Gene;gene=cutA;gene_biotype=protein_coding;locus_tag=RAF_RS01185;old_locus_tag=RAF_ORF0216
NC_012633.1	Protein Homology	CDS	233666	233980	.	-	0	ID=cds-WP_012719443.1;Parent=gene-RAF_RS01185;Dbxref=GenBank:WP_012719443.1;Name=WP_012719443.1;Ontology_term=GO:0010038;gbkey=CDS;gene=cutA;go_process=response to metal ion|0010038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014365304.1;locus_tag=RAF_RS01185;product=divalent-cation tolerance protein CutA;protein_id=WP_012719443.1;transl_table=11
NC_012633.1	RefSeq	gene	233983	234399	.	-	.	ID=gene-RAF_RS01190;Name=RAF_RS01190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01190;old_locus_tag=RAF_ORF0217
NC_012633.1	Protein Homology	CDS	233983	234399	.	-	0	ID=cds-WP_029374620.1;Parent=gene-RAF_RS01190;Dbxref=GenBank:WP_029374620.1;Name=WP_029374620.1;Ontology_term=GO:0016829,GO:0046872;gbkey=CDS;go_function=lyase activity|0016829||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477756.1;locus_tag=RAF_RS01190;product=6-pyruvoyl trahydropterin synthase family protein;protein_id=WP_029374620.1;transl_table=11
NC_012633.1	RefSeq	gene	234569	235756	.	-	.	ID=gene-RAF_RS01195;Name=odhB;gbkey=Gene;gene=odhB;gene_biotype=protein_coding;locus_tag=RAF_RS01195;old_locus_tag=RAF_ORF0218
NC_012633.1	Protein Homology	CDS	234569	235756	.	-	0	ID=cds-WP_012719445.1;Parent=gene-RAF_RS01195;Dbxref=GenBank:WP_012719445.1;Name=WP_012719445.1;Ontology_term=GO:0006099,GO:0004149,GO:0045252;gbkey=CDS;gene=odhB;go_component=oxoglutarate dehydrogenase complex|0045252||IEA;go_function=dihydrolipoyllysine-residue succinyltransferase activity|0004149||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271404.1;locus_tag=RAF_RS01195;product=2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase;protein_id=WP_012719445.1;transl_table=11
NC_012633.1	RefSeq	gene	235921	238707	.	-	.	ID=gene-RAF_RS01200;Name=RAF_RS01200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01200;old_locus_tag=RAF_ORF0219
NC_012633.1	Protein Homology	CDS	235921	238707	.	-	0	ID=cds-WP_012719446.1;Parent=gene-RAF_RS01200;Dbxref=GenBank:WP_012719446.1;Name=WP_012719446.1;Ontology_term=GO:0006099,GO:0004591,GO:0030976;gbkey=CDS;go_function=oxoglutarate dehydrogenase (succinyl-transferring) activity|0004591||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443328.1;locus_tag=RAF_RS01200;product=2-oxoglutarate dehydrogenase E1 component;protein_id=WP_012719446.1;transl_table=11
NC_012633.1	RefSeq	gene	238841	240331	.	-	.	ID=gene-RAF_RS01205;Name=RAF_RS01205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01205;old_locus_tag=RAF_ORF0220
NC_012633.1	Protein Homology	CDS	238841	240331	.	-	0	ID=cds-WP_012719447.1;Parent=gene-RAF_RS01205;Dbxref=GenBank:WP_012719447.1;Name=WP_012719447.1;Ontology_term=GO:0006508,GO:0004181,GO:0008270;gbkey=CDS;go_function=metallocarboxypeptidase activity|0004181||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409956.1;locus_tag=RAF_RS01205;product=carboxypeptidase M32;protein_id=WP_012719447.1;transl_table=11
NC_012633.1	RefSeq	gene	240508	242145	.	-	.	ID=gene-RAF_RS01210;Name=recN;gbkey=Gene;gene=recN;gene_biotype=protein_coding;locus_tag=RAF_RS01210;old_locus_tag=RAF_ORF0221
NC_012633.1	Protein Homology	CDS	240508	242145	.	-	0	ID=cds-WP_012719448.1;Parent=gene-RAF_RS01210;Dbxref=GenBank:WP_012719448.1;Name=WP_012719448.1;Ontology_term=GO:0006281,GO:0006310,GO:0005524;gbkey=CDS;gene=recN;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271400.1;locus_tag=RAF_RS01210;product=DNA repair protein RecN;protein_id=WP_012719448.1;transl_table=11
NC_012633.1	RefSeq	gene	242153	242908	.	-	.	ID=gene-RAF_RS01215;Name=RAF_RS01215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01215;old_locus_tag=RAF_ORF0222
NC_012633.1	Protein Homology	CDS	242153	242908	.	-	0	ID=cds-WP_012719449.1;Parent=gene-RAF_RS01215;Dbxref=GenBank:WP_012719449.1;Name=WP_012719449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004598609.1;locus_tag=RAF_RS01215;product=outer membrane protein assembly factor BamD;protein_id=WP_012719449.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	243010	243118	.	+	.	ID=gene-RAF_RS07375;Name=RAF_RS07375;end_range=243118,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS07375;partial=true;pseudo=true;start_range=.,243010
NC_012633.1	Protein Homology	CDS	243010	243118	.	+	0	ID=cds-RAF_RS07375;Parent=gene-RAF_RS07375;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=243118,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995672.1;locus_tag=RAF_RS07375;partial=true;product=palindromic element RPE1 domain-containing protein;pseudo=true;start_range=.,243010;transl_table=11
NC_012633.1	RefSeq	gene	243149	243277	.	-	.	ID=gene-RAF_RS07380;Name=RAF_RS07380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07380;old_locus_tag=RAF_ORF0223
NC_012633.1	Protein Homology	CDS	243149	243277	.	-	0	ID=cds-WP_004996545.1;Parent=gene-RAF_RS07380;Dbxref=GenBank:WP_004996545.1;Name=WP_004996545.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996545.1;locus_tag=RAF_RS07380;product=hypothetical protein;protein_id=WP_004996545.1;transl_table=11
NC_012633.1	RefSeq	gene	243267	243368	.	-	.	ID=gene-RAF_RS10685;Name=RAF_RS10685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10685
NC_012633.1	Protein Homology	CDS	243267	243368	.	-	0	ID=cds-WP_014410415.1;Parent=gene-RAF_RS10685;Dbxref=GenBank:WP_014410415.1;Name=WP_014410415.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017917.5;locus_tag=RAF_RS10685;product=ChaB family protein;protein_id=WP_014410415.1;transl_table=11
NC_012633.1	RefSeq	gene	243447	244568	.	-	.	ID=gene-RAF_RS01225;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;locus_tag=RAF_RS01225;old_locus_tag=RAF_ORF0224
NC_012633.1	Protein Homology	CDS	243447	244568	.	-	0	ID=cds-WP_004996543.1;Parent=gene-RAF_RS01225;Dbxref=GenBank:WP_004996543.1;Name=WP_004996543.1;Ontology_term=GO:0006457,GO:0009408,GO:0005515,GO:0005524;gbkey=CDS;gene=dnaJ;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA;go_process=protein folding|0006457||IEA,response to heat|0009408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996543.1;locus_tag=RAF_RS01225;product=molecular chaperone DnaJ;protein_id=WP_004996543.1;transl_table=11
NC_012633.1	RefSeq	gene	244697	246580	.	-	.	ID=gene-RAF_RS01230;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=RAF_RS01230;old_locus_tag=RAF_ORF0225
NC_012633.1	Protein Homology	CDS	244697	246580	.	-	0	ID=cds-WP_012719451.1;Parent=gene-RAF_RS01230;Dbxref=GenBank:WP_012719451.1;Name=WP_012719451.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887;gbkey=CDS;gene=dnaK;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004595925.1;locus_tag=RAF_RS01230;product=molecular chaperone DnaK;protein_id=WP_012719451.1;transl_table=11
NC_012633.1	RefSeq	gene	246644	248137	.	+	.	ID=gene-RAF_RS01235;Name=RAF_RS01235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01235;old_locus_tag=RAF_ORF0226
NC_012633.1	Protein Homology	CDS	246644	248137	.	+	0	ID=cds-WP_012719452.1;Parent=gene-RAF_RS01235;Dbxref=GenBank:WP_012719452.1;Name=WP_012719452.1;Ontology_term=GO:0006508,GO:0004252,GO:0005515;gbkey=CDS;go_function=serine-type endopeptidase activity|0004252||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996538.1;locus_tag=RAF_RS01235;product=S1C family serine protease;protein_id=WP_012719452.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	248863	249156	.	+	.	ID=gene-RAF_RS10505;Name=RAF_RS10505;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10505;pseudo=true
NC_012633.1	Protein Homology	CDS	248863	249156	.	+	0	ID=cds-RAF_RS10505;Parent=gene-RAF_RS10505;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150454.1;locus_tag=RAF_RS10505;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	249297	249644	.	-	.	ID=gene-RAF_RS01245;Name=RAF_RS01245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01245;old_locus_tag=RAF_ORF0227
NC_012633.1	Protein Homology	CDS	249297	249644	.	-	0	ID=cds-WP_012719453.1;Parent=gene-RAF_RS01245;Dbxref=GenBank:WP_012719453.1;Name=WP_012719453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410419.1;locus_tag=RAF_RS01245;product=hypothetical protein;protein_id=WP_012719453.1;transl_table=11
NC_012633.1	RefSeq	gene	249813	250286	.	+	.	ID=gene-RAF_RS01250;Name=RAF_RS01250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01250;old_locus_tag=RAF_ORF0228
NC_012633.1	Protein Homology	CDS	249813	250286	.	+	0	ID=cds-WP_012719454.1;Parent=gene-RAF_RS01250;Dbxref=GenBank:WP_012719454.1;Name=WP_012719454.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443338.1;locus_tag=RAF_RS01250;product=hypothetical protein;protein_id=WP_012719454.1;transl_table=11
NC_012633.1	RefSeq	gene	250294	251268	.	+	.	ID=gene-RAF_RS01255;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=RAF_RS01255;old_locus_tag=RAF_ORF0229
NC_012633.1	Protein Homology	CDS	250294	251268	.	+	0	ID=cds-WP_012719455.1;Parent=gene-RAF_RS01255;Dbxref=GenBank:WP_012719455.1;Name=WP_012719455.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=holA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443339.1;locus_tag=RAF_RS01255;product=DNA polymerase III subunit delta;protein_id=WP_012719455.1;transl_table=11
NC_012633.1	RefSeq	gene	251416	251955	.	+	.	ID=gene-RAF_RS01260;Name=RAF_RS01260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01260;old_locus_tag=RAF_ORF0230
NC_012633.1	Protein Homology	CDS	251416	251955	.	+	0	ID=cds-WP_012719456.1;Parent=gene-RAF_RS01260;Dbxref=GenBank:WP_012719456.1;Name=WP_012719456.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362795.1;locus_tag=RAF_RS01260;product=demethoxyubiquinone hydroxylase family protein;protein_id=WP_012719456.1;transl_table=11
NC_012633.1	RefSeq	gene	252506	253357	.	+	.	ID=gene-RAF_RS01265;Name=RAF_RS01265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01265;old_locus_tag=RAF_ORF0231
NC_012633.1	Protein Homology	CDS	252506	253357	.	+	0	ID=cds-WP_041471806.1;Parent=gene-RAF_RS01265;Dbxref=GenBank:WP_041471806.1;Name=WP_041471806.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362796.1;locus_tag=RAF_RS01265;product=cytochrome c oxidase subunit 3;protein_id=WP_041471806.1;transl_table=11
NC_012633.1	RefSeq	gene	253513	253869	.	+	.	ID=gene-RAF_RS01270;Name=RAF_RS01270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01270;old_locus_tag=RAF_ORF0232
NC_012633.1	Protein Homology	CDS	253513	253869	.	+	0	ID=cds-WP_012719458.1;Parent=gene-RAF_RS01270;Dbxref=GenBank:WP_012719458.1;Name=WP_012719458.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976904.1;locus_tag=RAF_RS01270;product=TrbC/VirB2 family protein;protein_id=WP_012719458.1;transl_table=11
NC_012633.1	RefSeq	gene	254213	254851	.	-	.	ID=gene-RAF_RS01275;Name=RAF_RS01275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01275;old_locus_tag=RAF_ORF0233
NC_012633.1	Protein Homology	CDS	254213	254851	.	-	0	ID=cds-WP_012719459.1;Parent=gene-RAF_RS01275;Dbxref=GenBank:WP_012719459.1;Name=WP_012719459.1;Ontology_term=GO:0008270;gbkey=CDS;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004595951.1;locus_tag=RAF_RS01275;product=MJ0042-type zinc finger domain-containing protein;protein_id=WP_012719459.1;transl_table=11
NC_012633.1	RefSeq	gene	254927	255751	.	+	.	ID=gene-RAF_RS01280;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=RAF_RS01280;old_locus_tag=RAF_ORF0234
NC_012633.1	Protein Homology	CDS	254927	255751	.	+	0	ID=cds-WP_012719460.1;Parent=gene-RAF_RS01280;Dbxref=GenBank:WP_012719460.1;Name=WP_012719460.1;Ontology_term=GO:0009089,GO:0008666;gbkey=CDS;gene=dapD;go_function=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase activity|0008666||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004595953.1;locus_tag=RAF_RS01280;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=WP_012719460.1;transl_table=11
NC_012633.1	RefSeq	gene	256050	256409	.	-	.	ID=gene-RAF_RS01285;Name=RAF_RS01285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01285
NC_012633.1	Protein Homology	CDS	256050	256409	.	-	0	ID=cds-WP_083762136.1;Parent=gene-RAF_RS01285;Dbxref=GenBank:WP_083762136.1;Name=WP_083762136.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419722.1;locus_tag=RAF_RS01285;product=hypothetical protein;protein_id=WP_083762136.1;transl_table=11
NC_012633.1	RefSeq	gene	256581	256730	.	-	.	ID=gene-RAF_RS09015;Name=RAF_RS09015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09015
NC_012633.1	GeneMarkS-2+	CDS	256581	256730	.	-	0	ID=cds-WP_158299171.1;Parent=gene-RAF_RS09015;Dbxref=GenBank:WP_158299171.1;Name=WP_158299171.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09015;product=hypothetical protein;protein_id=WP_158299171.1;transl_table=11
NC_012633.1	RefSeq	gene	257152	257421	.	-	.	ID=gene-RAF_RS01290;Name=RAF_RS01290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01290
NC_012633.1	Protein Homology	CDS	257152	257421	.	-	0	ID=cds-WP_041471807.1;Parent=gene-RAF_RS01290;Dbxref=GenBank:WP_041471807.1;Name=WP_041471807.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150467.1;locus_tag=RAF_RS01290;product=hypothetical protein;protein_id=WP_041471807.1;transl_table=11
NC_012633.1	RefSeq	gene	257637	257789	.	-	.	ID=gene-RAF_RS09190;Name=RAF_RS09190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09190
NC_012633.1	Protein Homology	CDS	257637	257789	.	-	0	ID=cds-WP_200858174.1;Parent=gene-RAF_RS09190;Dbxref=GenBank:WP_200858174.1;Name=WP_200858174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945494.1;locus_tag=RAF_RS09190;product=hypothetical protein;protein_id=WP_200858174.1;transl_table=11
NC_012633.1	RefSeq	gene	257804	260194	.	-	.	ID=gene-RAF_RS01295;Name=pbpC;gbkey=Gene;gene=pbpC;gene_biotype=protein_coding;locus_tag=RAF_RS01295;old_locus_tag=RAF_ORF0237
NC_012633.1	Protein Homology	CDS	257804	260194	.	-	0	ID=cds-WP_041471808.1;Parent=gene-RAF_RS01295;Dbxref=GenBank:WP_041471808.1;Name=WP_041471808.1;Ontology_term=GO:0009252,GO:0003824,GO:0009274;gbkey=CDS;gene=pbpC;go_component=peptidoglycan-based cell wall|0009274||IEA;go_function=catalytic activity|0003824||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016769943.1;locus_tag=RAF_RS01295;product=penicillin-binding protein 1C;protein_id=WP_041471808.1;transl_table=11
NC_012633.1	RefSeq	gene	260772	261203	.	+	.	ID=gene-RAF_RS01300;Name=RAF_RS01300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01300
NC_012633.1	Protein Homology	CDS	260772	261203	.	+	0	ID=cds-WP_041471809.1;Parent=gene-RAF_RS01300;Dbxref=GenBank:WP_041471809.1;Name=WP_041471809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150470.1;locus_tag=RAF_RS01300;product=hypothetical protein;protein_id=WP_041471809.1;transl_table=11
NC_012633.1	RefSeq	gene	261314	261517	.	+	.	ID=gene-RAF_RS01305;Name=RAF_RS01305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01305
NC_012633.1	Protein Homology	CDS	261314	261517	.	+	0	ID=cds-WP_004996507.1;Parent=gene-RAF_RS01305;Dbxref=GenBank:WP_004996507.1;Name=WP_004996507.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926023.1;locus_tag=RAF_RS01305;product=hypothetical protein;protein_id=WP_004996507.1;transl_table=11
NC_012633.1	RefSeq	gene	261524	261718	.	+	.	ID=gene-RAF_RS01310;Name=RAF_RS01310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01310
NC_012633.1	Protein Homology	CDS	261524	261718	.	+	0	ID=cds-WP_016926024.1;Parent=gene-RAF_RS01310;Dbxref=GenBank:WP_016926024.1;Name=WP_016926024.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016769941.1;locus_tag=RAF_RS01310;product=hypothetical protein;protein_id=WP_016926024.1;transl_table=11
NC_012633.1	RefSeq	gene	261806	262075	.	+	.	ID=gene-RAF_RS01315;Name=RAF_RS01315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01315
NC_012633.1	Protein Homology	CDS	261806	262075	.	+	0	ID=cds-WP_041471810.1;Parent=gene-RAF_RS01315;Dbxref=GenBank:WP_041471810.1;Name=WP_041471810.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364462.1;locus_tag=RAF_RS01315;product=hypothetical protein;protein_id=WP_041471810.1;transl_table=11
NC_012633.1	RefSeq	gene	262256	262411	.	+	.	ID=gene-RAF_RS09195;Name=RAF_RS09195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09195
NC_012633.1	Protein Homology	CDS	262256	262411	.	+	0	ID=cds-WP_200858175.1;Parent=gene-RAF_RS09195;Dbxref=GenBank:WP_200858175.1;Name=WP_200858175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996505.1;locus_tag=RAF_RS09195;product=hypothetical protein;protein_id=WP_200858175.1;transl_table=11
NC_012633.1	RefSeq	gene	263063	263278	.	+	.	ID=gene-RAF_RS01320;Name=RAF_RS01320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01320
NC_012633.1	Protein Homology	CDS	263063	263278	.	+	0	ID=cds-WP_041471811.1;Parent=gene-RAF_RS01320;Dbxref=GenBank:WP_041471811.1;Name=WP_041471811.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410429.1;locus_tag=RAF_RS01320;product=hypothetical protein;protein_id=WP_041471811.1;transl_table=11
NC_012633.1	RefSeq	gene	263569	264285	.	+	.	ID=gene-RAF_RS08530;Name=RAF_RS08530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08530
NC_012633.1	GeneMarkS-2+	CDS	263569	264285	.	+	0	ID=cds-WP_234943912.1;Parent=gene-RAF_RS08530;Dbxref=GenBank:WP_234943912.1;Name=WP_234943912.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS08530;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_234943912.1;transl_table=11
NC_012633.1	RefSeq	gene	264327	264500	.	+	.	ID=gene-RAF_RS10270;Name=RAF_RS10270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10270
NC_012633.1	Protein Homology	CDS	264327	264500	.	+	0	ID=cds-WP_268738946.1;Parent=gene-RAF_RS10270;Dbxref=GenBank:WP_268738946.1;Name=WP_268738946.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015737.5;locus_tag=RAF_RS10270;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_268738946.1;transl_table=11
NC_012633.1	RefSeq	gene	264506	264715	.	+	.	ID=gene-RAF_RS10275;Name=RAF_RS10275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10275
NC_012633.1	Protein Homology	CDS	264506	264715	.	+	0	ID=cds-WP_083762088.1;Parent=gene-RAF_RS10275;Dbxref=GenBank:WP_083762088.1;Name=WP_083762088.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364466.1;locus_tag=RAF_RS10275;product=autotransporter domain-containing protein;protein_id=WP_083762088.1;transl_table=11
NC_012633.1	RefSeq	gene	265202	265648	.	-	.	ID=gene-RAF_RS01340;Name=RAF_RS01340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01340;old_locus_tag=RAF_ORF0241
NC_012633.1	Protein Homology	CDS	265202	265648	.	-	0	ID=cds-WP_012719462.1;Parent=gene-RAF_RS01340;Dbxref=GenBank:WP_012719462.1;Name=WP_012719462.1;Ontology_term=GO:0050896,GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;go_process=response to stimulus|0050896||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012149243.1;locus_tag=RAF_RS01340;product=universal stress protein;protein_id=WP_012719462.1;transl_table=11
NC_012633.1	RefSeq	gene	265658	266599	.	-	.	ID=gene-RAF_RS01345;Name=RAF_RS01345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01345;old_locus_tag=RAF_ORF0242
NC_012633.1	Protein Homology	CDS	265658	266599	.	-	0	ID=cds-WP_012719463.1;Parent=gene-RAF_RS01345;Dbxref=GenBank:WP_012719463.1;Name=WP_012719463.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443298.1;locus_tag=RAF_RS01345;product=TAXI family TRAP transporter solute-binding subunit;protein_id=WP_012719463.1;transl_table=11
NC_012633.1	RefSeq	gene	266604	267674	.	-	.	ID=gene-RAF_RS01350;Name=RAF_RS01350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01350;old_locus_tag=RAF_ORF0243
NC_012633.1	Protein Homology	CDS	266604	267674	.	-	0	ID=cds-WP_012719464.1;Parent=gene-RAF_RS01350;Dbxref=GenBank:WP_012719464.1;Name=WP_012719464.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150477.1;locus_tag=RAF_RS01350;product=hypothetical protein;protein_id=WP_012719464.1;transl_table=11
NC_012633.1	RefSeq	gene	267687	268025	.	-	.	ID=gene-RAF_RS01355;Name=RAF_RS01355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01355;old_locus_tag=RAF_ORF0244
NC_012633.1	Protein Homology	CDS	267687	268025	.	-	0	ID=cds-WP_004996492.1;Parent=gene-RAF_RS01355;Dbxref=GenBank:WP_004996492.1;Name=WP_004996492.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945501.1;locus_tag=RAF_RS01355;product=ferredoxin family 2Fe-2S iron-sulfur cluster binding protein;protein_id=WP_004996492.1;transl_table=11
NC_012633.1	RefSeq	gene	268089	269876	.	-	.	ID=gene-RAF_RS01360;Name=hscA;gbkey=Gene;gene=hscA;gene_biotype=protein_coding;locus_tag=RAF_RS01360;old_locus_tag=RAF_ORF0245
NC_012633.1	Protein Homology	CDS	268089	269876	.	-	0	ID=cds-WP_012719465.1;Parent=gene-RAF_RS01360;Dbxref=GenBank:WP_012719465.1;Name=WP_012719465.1;gbkey=CDS;gene=hscA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010886232.1;locus_tag=RAF_RS01360;product=Fe-S protein assembly chaperone HscA;protein_id=WP_012719465.1;transl_table=11
NC_012633.1	RefSeq	gene	269867	270367	.	-	.	ID=gene-RAF_RS01365;Name=hscB;gbkey=Gene;gene=hscB;gene_biotype=protein_coding;locus_tag=RAF_RS01365;old_locus_tag=RAF_ORF0246
NC_012633.1	Protein Homology	CDS	269867	270367	.	-	0	ID=cds-WP_012719466.1;Parent=gene-RAF_RS01365;Dbxref=GenBank:WP_012719466.1;Name=WP_012719466.1;Ontology_term=GO:0044571,GO:0001671,GO:0051087;gbkey=CDS;gene=hscB;go_function=ATPase activator activity|0001671||IEA,protein-folding chaperone binding|0051087||IEA;go_process=[2Fe-2S] cluster assembly|0044571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190662.1;locus_tag=RAF_RS01365;product=Fe-S protein assembly co-chaperone HscB;protein_id=WP_012719466.1;transl_table=11
NC_012633.1	RefSeq	gene	270429	271010	.	+	.	ID=gene-RAF_RS01370;Name=RAF_RS01370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01370;old_locus_tag=RAF_ORF0247
NC_012633.1	Protein Homology	CDS	270429	271010	.	+	0	ID=cds-WP_012719467.1;Parent=gene-RAF_RS01370;Dbxref=GenBank:WP_012719467.1;Name=WP_012719467.1;Ontology_term=GO:0003723,GO:0004523;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271373.1;locus_tag=RAF_RS01370;product=ribonuclease HII;protein_id=WP_012719467.1;transl_table=11
NC_012633.1	RefSeq	gene	271164	273149	.	-	.	ID=gene-RAF_RS01375;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;locus_tag=RAF_RS01375;old_locus_tag=RAF_ORF0248
NC_012633.1	Protein Homology	CDS	271164	273149	.	-	0	ID=cds-WP_012719468.1;Parent=gene-RAF_RS01375;Dbxref=GenBank:WP_012719468.1;Name=WP_012719468.1;Ontology_term=GO:0006289,GO:0003677,GO:0005515,GO:0005524,GO:0016787,GO:0016887,GO:0009380;gbkey=CDS;gene=uvrB;go_component=excinuclease repair complex|0009380||IEA;go_function=DNA binding|0003677||IEA,protein binding|0005515||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477753.1;locus_tag=RAF_RS01375;product=excinuclease ABC subunit UvrB;protein_id=WP_012719468.1;transl_table=11
NC_012633.1	RefSeq	gene	273220	273528	.	+	.	ID=gene-RAF_RS01380;Name=grxC;gbkey=Gene;gene=grxC;gene_biotype=protein_coding;locus_tag=RAF_RS01380;old_locus_tag=RAF_ORF0249
NC_012633.1	Protein Homology	CDS	273220	273528	.	+	0	ID=cds-WP_012719469.1;Parent=gene-RAF_RS01380;Dbxref=GenBank:WP_012719469.1;Name=WP_012719469.1;Ontology_term=GO:0045454;gbkey=CDS;gene=grxC;go_process=cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271371.1;locus_tag=RAF_RS01380;product=glutaredoxin 3;protein_id=WP_012719469.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	273702	275441	.	+	.	ID=gene-RAF_RS01385;Name=RAF_RS01385;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01385;old_locus_tag=RAF_ORF0250;pseudo=true
NC_012633.1	Protein Homology	CDS	273702	275441	.	+	0	ID=cds-RAF_RS01385;Parent=gene-RAF_RS01385;Note=frameshifted%3B internal stop;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004598580.1;locus_tag=RAF_RS01385;product=ABCB family ABC transporter ATP-binding protein/permease;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	275982	276152	.	+	.	ID=gene-RAF_RS09200;Name=RAF_RS09200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09200
NC_012633.1	Protein Homology	CDS	275982	276152	.	+	0	ID=cds-WP_004996471.1;Parent=gene-RAF_RS09200;Dbxref=GenBank:WP_004996471.1;Name=WP_004996471.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996471.1;locus_tag=RAF_RS09200;product=hypothetical protein;protein_id=WP_004996471.1;transl_table=11
NC_012633.1	RefSeq	gene	276521	279238	.	+	.	ID=gene-RAF_RS01390;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;locus_tag=RAF_RS01390;old_locus_tag=RAF_ORF0253
NC_012633.1	Protein Homology	CDS	276521	279238	.	+	0	ID=cds-WP_012719470.1;Parent=gene-RAF_RS01390;Dbxref=GenBank:WP_012719470.1;Name=WP_012719470.1;Ontology_term=GO:0006265,GO:0003916,GO:0003918,GO:0009330;gbkey=CDS;gene=gyrA;go_component=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) complex|0009330||IEA;go_function=DNA topoisomerase activity|0003916||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443307.1;locus_tag=RAF_RS01390;product=DNA topoisomerase (ATP-hydrolyzing) subunit A;protein_id=WP_012719470.1;transl_table=11
NC_012633.1	RefSeq	gene	279830	280516	.	+	.	ID=gene-RAF_RS10280;Name=RAF_RS10280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10280
NC_012633.1	Protein Homology	CDS	279830	280516	.	+	0	ID=cds-WP_268738947.1;Parent=gene-RAF_RS10280;Dbxref=GenBank:WP_268738947.1;Name=WP_268738947.1;Ontology_term=GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;inference=COORDINATES: protein motif:HMM:NF012593.5;locus_tag=RAF_RS10280;product=cation:dicarboxylate symporter family transporter;protein_id=WP_268738947.1;transl_table=11
NC_012633.1	RefSeq	gene	280614	280904	.	+	.	ID=gene-RAF_RS10285;Name=RAF_RS10285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10285
NC_012633.1	Protein Homology	CDS	280614	280904	.	+	0	ID=cds-WP_041471813.1;Parent=gene-RAF_RS10285;Dbxref=GenBank:WP_041471813.1;Name=WP_041471813.1;Ontology_term=GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976935.1;locus_tag=RAF_RS10285;product=cation:dicarboxylate symporter family transporter;protein_id=WP_041471813.1;transl_table=11
NC_012633.1	RefSeq	gene	280989	281129	.	+	.	ID=gene-RAF_RS01415;Name=RAF_RS01415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01415
NC_012633.1	Protein Homology	CDS	280989	281129	.	+	0	ID=cds-WP_041471814.1;Parent=gene-RAF_RS01415;Dbxref=GenBank:WP_041471814.1;Name=WP_041471814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273244.1;locus_tag=RAF_RS01415;product=hypothetical protein;protein_id=WP_041471814.1;transl_table=11
NC_012633.1	RefSeq	gene	281251	281436	.	+	.	ID=gene-RAF_RS01420;Name=RAF_RS01420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01420;old_locus_tag=RAF_ORF0256
NC_012633.1	Protein Homology	CDS	281251	281436	.	+	0	ID=cds-WP_010976936.1;Parent=gene-RAF_RS01420;Dbxref=GenBank:WP_010976936.1;Name=WP_010976936.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014013979.1;locus_tag=RAF_RS01420;product=twin transmembrane helix small protein;protein_id=WP_010976936.1;transl_table=11
NC_012633.1	RefSeq	gene	281463	281678	.	-	.	ID=gene-RAF_RS01425;Name=iscX;gbkey=Gene;gene=iscX;gene_biotype=protein_coding;locus_tag=RAF_RS01425
NC_012633.1	Protein Homology	CDS	281463	281678	.	-	0	ID=cds-WP_041471815.1;Parent=gene-RAF_RS01425;Dbxref=GenBank:WP_041471815.1;Name=WP_041471815.1;Ontology_term=GO:0016226,GO:0005506;gbkey=CDS;gene=iscX;go_function=iron ion binding|0005506||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443239.1;locus_tag=RAF_RS01425;product=Fe-S cluster assembly protein IscX;protein_id=WP_041471815.1;transl_table=11
NC_012633.1	RefSeq	gene	281890	282417	.	+	.	ID=gene-RAF_RS01430;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=RAF_RS01430;old_locus_tag=RAF_ORF0257
NC_012633.1	Protein Homology	CDS	281890	282417	.	+	0	ID=cds-WP_012719471.1;Parent=gene-RAF_RS01430;Dbxref=GenBank:WP_012719471.1;Name=WP_012719471.1;Ontology_term=GO:0036211,GO:0042586;gbkey=CDS;gene=def;go_function=peptide deformylase activity|0042586||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150494.1;locus_tag=RAF_RS01430;product=peptide deformylase;protein_id=WP_012719471.1;transl_table=11
NC_012633.1	RefSeq	gene	282414	283325	.	+	.	ID=gene-RAF_RS01435;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=RAF_RS01435;old_locus_tag=RAF_ORF0258
NC_012633.1	Protein Homology	CDS	282414	283325	.	+	0	ID=cds-WP_010976939.1;Parent=gene-RAF_RS01435;Dbxref=GenBank:WP_010976939.1;Name=WP_010976939.1;Ontology_term=GO:0071951,GO:0004479,GO:0005737;gbkey=CDS;gene=fmt;go_component=cytoplasm|0005737||IEA;go_function=methionyl-tRNA formyltransferase activity|0004479||IEA;go_process=conversion of methionyl-tRNA to N-formyl-methionyl-tRNA|0071951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976939.1;locus_tag=RAF_RS01435;product=methionyl-tRNA formyltransferase;protein_id=WP_010976939.1;transl_table=11
NC_012633.1	RefSeq	gene	283495	283911	.	+	.	ID=gene-RAF_RS01440;Name=RAF_RS01440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01440;old_locus_tag=RAF_ORF0259
NC_012633.1	Protein Homology	CDS	283495	283911	.	+	0	ID=cds-WP_012719472.1;Parent=gene-RAF_RS01440;Dbxref=GenBank:WP_012719472.1;Name=WP_012719472.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719472.1;locus_tag=RAF_RS01440;product=hypothetical protein;protein_id=WP_012719472.1;transl_table=11
NC_012633.1	RefSeq	gene	284170	286930	.	+	.	ID=gene-RAF_RS01445;Name=RAF_RS01445;gbkey=Gene;gene_biotype=rRNA;locus_tag=RAF_RS01445;old_locus_tag=RAF_RNA07
NC_012633.1	cmsearch	rRNA	284170	286930	.	+	.	ID=rna-RAF_RS01445;Parent=gene-RAF_RS01445;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS01445;product=23S ribosomal RNA
NC_012633.1	cmsearch	exon	284170	286930	.	+	.	ID=exon-RAF_RS01445-1;Parent=rna-RAF_RS01445;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS01445;product=23S ribosomal RNA
NC_012633.1	RefSeq	gene	287210	287324	.	+	.	ID=gene-RAF_RS01450;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=RAF_RS01450;old_locus_tag=RAF_RNA08
NC_012633.1	cmsearch	rRNA	287210	287324	.	+	.	ID=rna-RAF_RS01450;Parent=gene-RAF_RS01450;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS01450;product=5S ribosomal RNA
NC_012633.1	cmsearch	exon	287210	287324	.	+	.	ID=exon-RAF_RS01450-1;Parent=rna-RAF_RS01450;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS01450;product=5S ribosomal RNA
NC_012633.1	RefSeq	gene	287733	288170	.	+	.	ID=gene-RAF_RS09630;Name=RAF_RS09630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09630;old_locus_tag=RAF_ORF0260
NC_012633.1	Protein Homology	CDS	287733	288170	.	+	0	ID=cds-WP_234943913.1;Parent=gene-RAF_RS09630;Dbxref=GenBank:WP_234943913.1;Name=WP_234943913.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: protein motif:HMM:NF016464.5;locus_tag=RAF_RS09630;product=glycosyltransferase 61 family protein;protein_id=WP_234943913.1;transl_table=11
NC_012633.1	RefSeq	gene	288212	288409	.	+	.	ID=gene-RAF_RS09635;Name=RAF_RS09635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09635
NC_012633.1	GeneMarkS-2+	CDS	288212	288409	.	+	0	ID=cds-WP_234943914.1;Parent=gene-RAF_RS09635;Dbxref=GenBank:WP_234943914.1;Name=WP_234943914.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09635;product=hypothetical protein;protein_id=WP_234943914.1;transl_table=11
NC_012633.1	RefSeq	gene	288457	289509	.	-	.	ID=gene-RAF_RS01460;Name=zapE;gbkey=Gene;gene=zapE;gene_biotype=protein_coding;locus_tag=RAF_RS01460;old_locus_tag=RAF_ORF0262
NC_012633.1	Protein Homology	CDS	288457	289509	.	-	0	ID=cds-WP_012719473.1;Parent=gene-RAF_RS01460;Dbxref=GenBank:WP_012719473.1;Name=WP_012719473.1;Ontology_term=GO:0051301,GO:0005524,GO:0016887;gbkey=CDS;gene=zapE;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014013984.1;locus_tag=RAF_RS01460;product=cell division protein ZapE;protein_id=WP_012719473.1;transl_table=11
NC_012633.1	RefSeq	gene	289724	290821	.	-	.	ID=gene-RAF_RS01470;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=RAF_RS01470;old_locus_tag=RAF_ORF0263
NC_012633.1	Protein Homology	CDS	289724	290821	.	-	0	ID=cds-WP_012719474.1;Parent=gene-RAF_RS01470;Dbxref=GenBank:WP_012719474.1;Name=WP_012719474.1;gbkey=CDS;gene=queA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443245.1;locus_tag=RAF_RS01470;product=tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA;protein_id=WP_012719474.1;transl_table=11
NC_012633.1	RefSeq	gene	290988	291338	.	+	.	ID=gene-RAF_RS09640;Name=RAF_RS09640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09640;old_locus_tag=RAF_ORF0264
NC_012633.1	Protein Homology	CDS	290988	291338	.	+	0	ID=cds-WP_041471816.1;Parent=gene-RAF_RS09640;Dbxref=GenBank:WP_041471816.1;Name=WP_041471816.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926040.1;locus_tag=RAF_RS09640;product=hypothetical protein;protein_id=WP_041471816.1;transl_table=11
NC_012633.1	RefSeq	gene	291369	291557	.	+	.	ID=gene-RAF_RS09645;Name=RAF_RS09645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09645
NC_012633.1	Protein Homology	CDS	291369	291557	.	+	0	ID=cds-WP_327203436.1;Parent=gene-RAF_RS09645;Dbxref=GenBank:WP_327203436.1;Name=WP_327203436.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: protein motif:HMM:NF024206.5;locus_tag=RAF_RS09645;product=ankyrin repeat domain-containing protein;protein_id=WP_327203436.1;transl_table=11
NC_012633.1	RefSeq	gene	291728	292120	.	+	.	ID=gene-RAF_RS09650;Name=RAF_RS09650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09650;old_locus_tag=RAF_ORF0265
NC_012633.1	Protein Homology	CDS	291728	292120	.	+	0	ID=cds-WP_012719476.1;Parent=gene-RAF_RS09650;Dbxref=GenBank:WP_012719476.1;Name=WP_012719476.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976945.1;locus_tag=RAF_RS09650;product=hypothetical protein;protein_id=WP_012719476.1;transl_table=11
NC_012633.1	RefSeq	gene	292188	293957	.	-	.	ID=gene-RAF_RS01485;Name=RAF_RS01485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01485;old_locus_tag=RAF_ORF0266
NC_012633.1	Protein Homology	CDS	292188	293957	.	-	0	ID=cds-WP_012719477.1;Parent=gene-RAF_RS01485;Dbxref=GenBank:WP_012719477.1;Name=WP_012719477.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736512.1;locus_tag=RAF_RS01485;product=ABC transporter ATP-binding protein;protein_id=WP_012719477.1;transl_table=11
NC_012633.1	RefSeq	gene	294138	294410	.	+	.	ID=gene-RAF_RS01490;Name=RAF_RS01490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01490;old_locus_tag=RAF_ORF0267
NC_012633.1	Protein Homology	CDS	294138	294410	.	+	0	ID=cds-WP_010976947.1;Parent=gene-RAF_RS01490;Dbxref=GenBank:WP_010976947.1;Name=WP_010976947.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596007.1;locus_tag=RAF_RS01490;product=DUF2671 domain-containing protein;protein_id=WP_010976947.1;transl_table=11
NC_012633.1	RefSeq	gene	294562	295932	.	+	.	ID=gene-RAF_RS01495;Name=RAF_RS01495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01495;old_locus_tag=RAF_ORF0268
NC_012633.1	Protein Homology	CDS	294562	295932	.	+	0	ID=cds-WP_012719478.1;Parent=gene-RAF_RS01495;Dbxref=GenBank:WP_012719478.1;Name=WP_012719478.1;Ontology_term=GO:0009055,GO:0046872,GO:0016020,GO:0070069;gbkey=CDS;go_component=membrane|0016020||IEA,cytochrome complex|0070069||IEA;go_function=electron transfer activity|0009055||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443248.1;locus_tag=RAF_RS01495;product=cytochrome ubiquinol oxidase subunit I;protein_id=WP_012719478.1;transl_table=11
NC_012633.1	RefSeq	gene	295940	296959	.	+	.	ID=gene-RAF_RS01500;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=RAF_RS01500;old_locus_tag=RAF_ORF0269
NC_012633.1	Protein Homology	CDS	295940	296959	.	+	0	ID=cds-WP_012719479.1;Parent=gene-RAF_RS01500;Dbxref=GenBank:WP_012719479.1;Name=WP_012719479.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydB;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010423624.1;locus_tag=RAF_RS01500;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_012719479.1;transl_table=11
NC_012633.1	RefSeq	gene	297161	297403	.	+	.	ID=gene-RAF_RS01505;Name=RAF_RS01505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01505;old_locus_tag=RAF_ORF0270
NC_012633.1	Protein Homology	CDS	297161	297403	.	+	0	ID=cds-WP_012719480.1;Parent=gene-RAF_RS01505;Dbxref=GenBank:WP_012719480.1;Name=WP_012719480.1;Ontology_term=GO:0006355,GO:0045927,GO:0003677,GO:0097351,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=DNA binding|0003677||IEA,toxin sequestering activity|0097351||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,positive regulation of growth|0045927||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719480.1;locus_tag=RAF_RS01505;product=type II toxin-antitoxin system Phd/YefM family antitoxin;protein_id=WP_012719480.1;transl_table=11
NC_012633.1	RefSeq	gene	297414	297674	.	+	.	ID=gene-RAF_RS01510;Name=RAF_RS01510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01510;old_locus_tag=RAF_ORF0271
NC_012633.1	Protein Homology	CDS	297414	297674	.	+	0	ID=cds-WP_004996425.1;Parent=gene-RAF_RS01510;Dbxref=GenBank:WP_004996425.1;Name=WP_004996425.1;Ontology_term=GO:0008219;gbkey=CDS;go_process=cell death|0008219||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410452.1;locus_tag=RAF_RS01510;product=Txe/YoeB family addiction module toxin;protein_id=WP_004996425.1;transl_table=11
NC_012633.1	RefSeq	gene	297667	298515	.	+	.	ID=gene-RAF_RS01515;Name=RAF_RS01515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01515;old_locus_tag=RAF_ORF0272
NC_012633.1	Protein Homology	CDS	297667	298515	.	+	0	ID=cds-WP_012719481.1;Parent=gene-RAF_RS01515;Dbxref=GenBank:WP_012719481.1;Name=WP_012719481.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996423.1;locus_tag=RAF_RS01515;product=glycosyltransferase family 2 protein;protein_id=WP_012719481.1;transl_table=11
NC_012633.1	RefSeq	gene	298589	299827	.	+	.	ID=gene-RAF_RS01520;Name=RAF_RS01520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01520;old_locus_tag=RAF_ORF0273
NC_012633.1	Protein Homology	CDS	298589	299827	.	+	0	ID=cds-WP_041471817.1;Parent=gene-RAF_RS01520;Dbxref=GenBank:WP_041471817.1;Name=WP_041471817.1;Ontology_term=GO:0008237,GO:0046872;gbkey=CDS;go_function=metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596018.1;locus_tag=RAF_RS01520;product=M16 family metallopeptidase;protein_id=WP_041471817.1;transl_table=11
NC_012633.1	RefSeq	gene	299981	300691	.	+	.	ID=gene-RAF_RS01525;Name=RAF_RS01525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01525;old_locus_tag=RAF_ORF0274
NC_012633.1	Protein Homology	CDS	299981	300691	.	+	0	ID=cds-WP_004996420.1;Parent=gene-RAF_RS01525;Dbxref=GenBank:WP_004996420.1;Name=WP_004996420.1;Ontology_term=GO:0004639,GO:0005524;gbkey=CDS;go_function=phosphoribosylaminoimidazolesuccinocarboxamide synthase activity|0004639||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477206.1;locus_tag=RAF_RS01525;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=WP_004996420.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	300911	302498	.	+	.	ID=gene-RAF_RS01530;Name=RAF_RS01530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01530;old_locus_tag=RAF_ORF0275;pseudo=true
NC_012633.1	Protein Homology	CDS	300911	302498	.	+	0	ID=cds-RAF_RS01530;Parent=gene-RAF_RS01530;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996418.1;locus_tag=RAF_RS01530;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	302594	304501	.	+	.	ID=gene-RAF_RS01535;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=RAF_RS01535;old_locus_tag=RAF_ORF0276
NC_012633.1	Protein Homology	CDS	302594	304501	.	+	0	ID=cds-WP_012719484.1;Parent=gene-RAF_RS01535;Dbxref=GenBank:WP_012719484.1;Name=WP_012719484.1;Ontology_term=GO:0006435,GO:0004829,GO:0005524,GO:0005737;gbkey=CDS;gene=thrS;go_component=cytoplasm|0005737||IEA;go_function=threonine-tRNA ligase activity|0004829||IEA,ATP binding|0005524||IEA;go_process=threonyl-tRNA aminoacylation|0006435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976955.1;locus_tag=RAF_RS01535;product=threonine--tRNA ligase;protein_id=WP_012719484.1;transl_table=11
NC_012633.1	RefSeq	gene	304589	304813	.	+	.	ID=gene-RAF_RS01540;Name=RAF_RS01540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01540
NC_012633.1	Protein Homology	CDS	304589	304813	.	+	0	ID=cds-WP_041471818.1;Parent=gene-RAF_RS01540;Dbxref=GenBank:WP_041471818.1;Name=WP_041471818.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443257.1;locus_tag=RAF_RS01540;product=hypothetical protein;protein_id=WP_041471818.1;transl_table=11
NC_012633.1	RefSeq	gene	305066	305659	.	+	.	ID=gene-RAF_RS07450;Name=RAF_RS07450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07450
NC_012633.1	GeneMarkS-2+	CDS	305066	305659	.	+	0	ID=cds-WP_234943915.1;Parent=gene-RAF_RS07450;Dbxref=GenBank:WP_234943915.1;Name=WP_234943915.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS07450;product=hypothetical protein;protein_id=WP_234943915.1;transl_table=11
NC_012633.1	RefSeq	gene	306125	306238	.	+	.	ID=gene-RAF_RS09020;Name=RAF_RS09020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09020
NC_012633.1	Protein Homology	CDS	306125	306238	.	+	0	ID=cds-WP_014419734.1;Parent=gene-RAF_RS09020;Dbxref=GenBank:WP_014419734.1;Name=WP_014419734.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: protein motif:HMM:NF012235.5;locus_tag=RAF_RS09020;product=ATP-binding cassette domain-containing protein;protein_id=WP_014419734.1;transl_table=11
NC_012633.1	RefSeq	gene	306350	306757	.	+	.	ID=gene-RAF_RS01555;Name=RAF_RS01555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01555
NC_012633.1	Protein Homology	CDS	306350	306757	.	+	0	ID=cds-WP_234943916.1;Parent=gene-RAF_RS01555;Dbxref=GenBank:WP_234943916.1;Name=WP_234943916.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976960.1;locus_tag=RAF_RS01555;product=ATP-binding cassette domain-containing protein;protein_id=WP_234943916.1;transl_table=11
NC_012633.1	RefSeq	gene	306804	307061	.	-	.	ID=gene-RAF_RS09655;Name=RAF_RS09655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09655
NC_012633.1	Protein Homology	CDS	306804	307061	.	-	0	ID=cds-WP_041471819.1;Parent=gene-RAF_RS09655;Dbxref=GenBank:WP_041471819.1;Name=WP_041471819.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF021579.5;locus_tag=RAF_RS09655;product=DUF2310 family Zn-ribbon-containing protein;protein_id=WP_041471819.1;transl_table=11
NC_012633.1	RefSeq	gene	307070	307348	.	-	.	ID=gene-RAF_RS09660;Name=RAF_RS09660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09660
NC_012633.1	Protein Homology	CDS	307070	307348	.	-	0	ID=cds-WP_041471820.1;Parent=gene-RAF_RS09660;Dbxref=GenBank:WP_041471820.1;Name=WP_041471820.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917016.1;locus_tag=RAF_RS09660;product=hypothetical protein;protein_id=WP_041471820.1;transl_table=11
NC_012633.1	RefSeq	gene	307792	308208	.	-	.	ID=gene-RAF_RS01570;Name=RAF_RS01570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01570;old_locus_tag=RAF_ORF0281
NC_012633.1	Protein Homology	CDS	307792	308208	.	-	0	ID=cds-WP_012719485.1;Parent=gene-RAF_RS01570;Dbxref=GenBank:WP_012719485.1;Name=WP_012719485.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736503.1;locus_tag=RAF_RS01570;product=DUF2660 domain-containing protein;protein_id=WP_012719485.1;transl_table=11
NC_012633.1	RefSeq	gene	308405	308869	.	-	.	ID=gene-RAF_RS01575;Name=RAF_RS01575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01575;old_locus_tag=RAF_ORF0283
NC_012633.1	Protein Homology	CDS	308405	308869	.	-	0	ID=cds-WP_041471821.1;Parent=gene-RAF_RS01575;Dbxref=GenBank:WP_041471821.1;Name=WP_041471821.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736502.1;locus_tag=RAF_RS01575;product=hypothetical protein;protein_id=WP_041471821.1;transl_table=11
NC_012633.1	RefSeq	gene	309088	309288	.	-	.	ID=gene-RAF_RS01580;Name=RAF_RS01580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01580
NC_012633.1	Protein Homology	CDS	309088	309288	.	-	0	ID=cds-WP_041471822.1;Parent=gene-RAF_RS01580;Dbxref=GenBank:WP_041471822.1;Name=WP_041471822.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410460.1;locus_tag=RAF_RS01580;product=hypothetical protein;protein_id=WP_041471822.1;transl_table=11
NC_012633.1	RefSeq	gene	309597	310958	.	+	.	ID=gene-RAF_RS01585;Name=RAF_RS01585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01585;old_locus_tag=RAF_ORF0284
NC_012633.1	Protein Homology	CDS	309597	310958	.	+	0	ID=cds-WP_012719488.1;Parent=gene-RAF_RS01585;Dbxref=GenBank:WP_012719488.1;Name=WP_012719488.1;Ontology_term=GO:0055085,GO:0015562;gbkey=CDS;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719488.1;locus_tag=RAF_RS01585;product=TolC family protein;protein_id=WP_012719488.1;transl_table=11
NC_012633.1	RefSeq	gene	310960	311358	.	+	.	ID=gene-RAF_RS01590;Name=RAF_RS01590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01590;old_locus_tag=RAF_ORF0285
NC_012633.1	Protein Homology	CDS	310960	311358	.	+	0	ID=cds-WP_012719489.1;Parent=gene-RAF_RS01590;Dbxref=GenBank:WP_012719489.1;Name=WP_012719489.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362832.1;locus_tag=RAF_RS01590;product=DUF2497 domain-containing protein;protein_id=WP_012719489.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	311367	311585	.	+	.	ID=gene-RAF_RS09665;Name=RAF_RS09665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS09665;pseudo=true
NC_012633.1	Protein Homology	CDS	311367	311585	.	+	0	ID=cds-RAF_RS09665;Parent=gene-RAF_RS09665;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926056.1;locus_tag=RAF_RS09665;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	311575	313296	.	+	.	ID=gene-RAF_RS01600;Name=RAF_RS01600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01600;old_locus_tag=RAF_ORF0286
NC_012633.1	Protein Homology	CDS	311575	313296	.	+	0	ID=cds-WP_012719490.1;Parent=gene-RAF_RS01600;Dbxref=GenBank:WP_012719490.1;Name=WP_012719490.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736497.1;locus_tag=RAF_RS01600;product=ankyrin repeat domain-containing protein;protein_id=WP_012719490.1;transl_table=11
NC_012633.1	RefSeq	gene	313506	315494	.	+	.	ID=gene-RAF_RS01605;Name=parE;gbkey=Gene;gene=parE;gene_biotype=protein_coding;locus_tag=RAF_RS01605;old_locus_tag=RAF_ORF0287
NC_012633.1	Protein Homology	CDS	313506	315494	.	+	0	ID=cds-WP_012719491.1;Parent=gene-RAF_RS01605;Dbxref=GenBank:WP_012719491.1;Name=WP_012719491.1;Ontology_term=GO:0006265,GO:0003677,GO:0003918,GO:0005524,GO:0005694;gbkey=CDS;gene=parE;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190687.1;locus_tag=RAF_RS01605;product=DNA topoisomerase IV subunit B;protein_id=WP_012719491.1;transl_table=11
NC_012633.1	RefSeq	gene	315610	316980	.	+	.	ID=gene-RAF_RS01610;Name=RAF_RS01610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01610;old_locus_tag=RAF_ORF0288
NC_012633.1	Protein Homology	CDS	315610	316980	.	+	0	ID=cds-WP_012719492.1;Parent=gene-RAF_RS01610;Dbxref=GenBank:WP_012719492.1;Name=WP_012719492.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014413050.1;locus_tag=RAF_RS01610;product=S41 family peptidase;protein_id=WP_012719492.1;transl_table=11
NC_012633.1	RefSeq	gene	317195	318688	.	+	.	ID=gene-RAF_RS01615;Name=RAF_RS01615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01615;old_locus_tag=RAF_ORF0289
NC_012633.1	Protein Homology	CDS	317195	318688	.	+	0	ID=cds-WP_012719493.1;Parent=gene-RAF_RS01615;Dbxref=GenBank:WP_012719493.1;Name=WP_012719493.1;Ontology_term=GO:0000160,GO:0007165,GO:0000155,GO:0004673,GO:0005524,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728138.1;locus_tag=RAF_RS01615;product=sensor histidine kinase;protein_id=WP_012719493.1;transl_table=11
NC_012633.1	RefSeq	gene	318754	319491	.	+	.	ID=gene-RAF_RS01620;Name=ybgF;gbkey=Gene;gene=ybgF;gene_biotype=protein_coding;locus_tag=RAF_RS01620;old_locus_tag=RAF_ORF0290
NC_012633.1	Protein Homology	CDS	318754	319491	.	+	0	ID=cds-WP_012719494.1;Parent=gene-RAF_RS01620;Dbxref=GenBank:WP_012719494.1;Name=WP_012719494.1;Ontology_term=GO:0005515;gbkey=CDS;gene=ybgF;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719494.1;locus_tag=RAF_RS01620;product=tol-pal system protein YbgF;protein_id=WP_012719494.1;transl_table=11
NC_012633.1	RefSeq	gene	319504	320166	.	+	.	ID=gene-RAF_RS01625;Name=RAF_RS01625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01625;old_locus_tag=RAF_ORF0291
NC_012633.1	Protein Homology	CDS	319504	320166	.	+	0	ID=cds-WP_012719495.1;Parent=gene-RAF_RS01625;Dbxref=GenBank:WP_012719495.1;Name=WP_012719495.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410019.1;locus_tag=RAF_RS01625;product=DUF2659 family protein;protein_id=WP_012719495.1;transl_table=11
NC_012633.1	RefSeq	gene	320189	321433	.	+	.	ID=gene-RAF_RS01630;Name=RAF_RS01630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01630;old_locus_tag=RAF_ORF0292
NC_012633.1	Protein Homology	CDS	320189	321433	.	+	0	ID=cds-WP_012719496.1;Parent=gene-RAF_RS01630;Dbxref=GenBank:WP_012719496.1;Name=WP_012719496.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443269.1;locus_tag=RAF_RS01630;product=outer membrane protein assembly factor BamB;protein_id=WP_012719496.1;transl_table=11
NC_012633.1	RefSeq	gene	321526	321993	.	+	.	ID=gene-RAF_RS01635;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;locus_tag=RAF_RS01635;old_locus_tag=RAF_ORF0293
NC_012633.1	Protein Homology	CDS	321526	321993	.	+	0	ID=cds-WP_012719497.1;Parent=gene-RAF_RS01635;Dbxref=GenBank:WP_012719497.1;Name=WP_012719497.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplM;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011256772.1;locus_tag=RAF_RS01635;product=50S ribosomal protein L13;protein_id=WP_012719497.1;transl_table=11
NC_012633.1	RefSeq	gene	322000	322479	.	+	.	ID=gene-RAF_RS01640;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;locus_tag=RAF_RS01640;old_locus_tag=RAF_ORF0294
NC_012633.1	Protein Homology	CDS	322000	322479	.	+	0	ID=cds-WP_004996371.1;Parent=gene-RAF_RS01640;Dbxref=GenBank:WP_004996371.1;Name=WP_004996371.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011476917.1;locus_tag=RAF_RS01640;product=30S ribosomal protein S9;protein_id=WP_004996371.1;transl_table=11
NC_012633.1	RefSeq	gene	322713	322789	.	+	.	ID=gene-RAF_RS01645;Name=RAF_RS01645;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS01645;old_locus_tag=RAF_RNA09
NC_012633.1	tRNAscan-SE	tRNA	322713	322789	.	+	.	ID=rna-RAF_RS01645;Parent=gene-RAF_RS01645;anticodon=(pos:322747..322749);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS01645;product=tRNA-Met
NC_012633.1	tRNAscan-SE	exon	322713	322789	.	+	.	ID=exon-RAF_RS01645-1;Parent=rna-RAF_RS01645;anticodon=(pos:322747..322749);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS01645;product=tRNA-Met
NC_012633.1	RefSeq	gene	323218	323418	.	+	.	ID=gene-RAF_RS01650;Name=RAF_RS01650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01650;old_locus_tag=RAF_ORF0295
NC_012633.1	Protein Homology	CDS	323218	323418	.	+	0	ID=cds-WP_010976975.1;Parent=gene-RAF_RS01650;Dbxref=GenBank:WP_010976975.1;Name=WP_010976975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926063.1;locus_tag=RAF_RS01650;product=hypothetical protein;protein_id=WP_010976975.1;transl_table=11
NC_012633.1	RefSeq	gene	323755	323916	.	+	.	ID=gene-RAF_RS01655;Name=RAF_RS01655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01655
NC_012633.1	Protein Homology	CDS	323755	323916	.	+	0	ID=cds-WP_041471823.1;Parent=gene-RAF_RS01655;Dbxref=GenBank:WP_041471823.1;Name=WP_041471823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917029.1;locus_tag=RAF_RS01655;product=M15 family metallopeptidase;protein_id=WP_041471823.1;transl_table=11
NC_012633.1	RefSeq	gene	324026	324319	.	+	.	ID=gene-RAF_RS01660;Name=RAF_RS01660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01660;old_locus_tag=RAF_ORF0296
NC_012633.1	Protein Homology	CDS	324026	324319	.	+	0	ID=cds-WP_012719498.1;Parent=gene-RAF_RS01660;Dbxref=GenBank:WP_012719498.1;Name=WP_012719498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443274.1;locus_tag=RAF_RS01660;product=hypothetical protein;protein_id=WP_012719498.1;transl_table=11
NC_012633.1	RefSeq	gene	324326	324547	.	+	.	ID=gene-RAF_RS01665;Name=RAF_RS01665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01665
NC_012633.1	Protein Homology	CDS	324326	324547	.	+	0	ID=cds-WP_041471824.1;Parent=gene-RAF_RS01665;Dbxref=GenBank:WP_041471824.1;Name=WP_041471824.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273277.1;locus_tag=RAF_RS01665;product=hypothetical protein;protein_id=WP_041471824.1;transl_table=11
NC_012633.1	RefSeq	gene	324713	325198	.	-	.	ID=gene-RAF_RS01670;Name=RAF_RS01670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01670;old_locus_tag=RAF_ORF0297
NC_012633.1	Protein Homology	CDS	324713	325198	.	-	0	ID=cds-WP_012719499.1;Parent=gene-RAF_RS01670;Dbxref=GenBank:WP_012719499.1;Name=WP_012719499.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008580323.1;locus_tag=RAF_RS01670;product=RNA pyrophosphohydrolase;protein_id=WP_012719499.1;transl_table=11
NC_012633.1	RefSeq	gene	325223	326575	.	-	.	ID=gene-RAF_RS01675;Name=RAF_RS01675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01675;old_locus_tag=RAF_ORF0298
NC_012633.1	Protein Homology	CDS	325223	326575	.	-	0	ID=cds-WP_012719500.1;Parent=gene-RAF_RS01675;Dbxref=GenBank:WP_012719500.1;Name=WP_012719500.1;Ontology_term=GO:0000160;gbkey=CDS;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443277.1;locus_tag=RAF_RS01675;product=PleD family two-component system response regulator;protein_id=WP_012719500.1;transl_table=11
NC_012633.1	RefSeq	gene	326651	327217	.	+	.	ID=gene-RAF_RS01680;Name=efp;gbkey=Gene;gene=efp;gene_biotype=protein_coding;locus_tag=RAF_RS01680;old_locus_tag=RAF_ORF0299
NC_012633.1	Protein Homology	CDS	326651	327217	.	+	0	ID=cds-WP_012719501.1;Parent=gene-RAF_RS01680;Dbxref=GenBank:WP_012719501.1;Name=WP_012719501.1;Ontology_term=GO:0006414,GO:0003746,GO:0005737;gbkey=CDS;gene=efp;go_component=cytoplasm|0005737||IEA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477633.1;locus_tag=RAF_RS01680;product=elongation factor P;protein_id=WP_012719501.1;transl_table=11
NC_012633.1	RefSeq	gene	327439	328185	.	+	.	ID=gene-RAF_RS01685;Name=RAF_RS01685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01685;old_locus_tag=RAF_ORF0300
NC_012633.1	Protein Homology	CDS	327439	328185	.	+	0	ID=cds-WP_012719502.1;Parent=gene-RAF_RS01685;Dbxref=GenBank:WP_012719502.1;Name=WP_012719502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917034.1;locus_tag=RAF_RS01685;product=inositol monophosphatase family protein;protein_id=WP_012719502.1;transl_table=11
NC_012633.1	RefSeq	gene	328257	328580	.	+	.	ID=gene-RAF_RS01690;Name=RAF_RS01690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01690;old_locus_tag=RAF_ORF0301
NC_012633.1	Protein Homology	CDS	328257	328580	.	+	0	ID=cds-WP_010976982.1;Parent=gene-RAF_RS01690;Dbxref=GenBank:WP_010976982.1;Name=WP_010976982.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014413036.1;locus_tag=RAF_RS01690;product=DUF2610 domain-containing protein;protein_id=WP_010976982.1;transl_table=11
NC_012633.1	RefSeq	gene	328614	329309	.	+	.	ID=gene-RAF_RS01695;Name=RAF_RS01695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01695;old_locus_tag=RAF_ORF0302
NC_012633.1	Protein Homology	CDS	328614	329309	.	+	0	ID=cds-WP_004996349.1;Parent=gene-RAF_RS01695;Dbxref=GenBank:WP_004996349.1;Name=WP_004996349.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443281.1;locus_tag=RAF_RS01695;product=phosphatidylserine decarboxylase;protein_id=WP_004996349.1;transl_table=11
NC_012633.1	RefSeq	gene	329572	330336	.	+	.	ID=gene-RAF_RS01700;Name=RAF_RS01700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01700;old_locus_tag=RAF_ORF0303
NC_012633.1	Protein Homology	CDS	329572	330336	.	+	0	ID=cds-WP_012719503.1;Parent=gene-RAF_RS01700;Dbxref=GenBank:WP_012719503.1;Name=WP_012719503.1;Ontology_term=GO:0008654,GO:0016780;gbkey=CDS;go_function=phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917036.1;locus_tag=RAF_RS01700;product=CDP-alcohol phosphatidyltransferase family protein;protein_id=WP_012719503.1;transl_table=11
NC_012633.1	RefSeq	gene	330345	331397	.	+	.	ID=gene-RAF_RS01705;Name=RAF_RS01705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01705;old_locus_tag=RAF_ORF0304
NC_012633.1	Protein Homology	CDS	330345	331397	.	+	0	ID=cds-WP_012719504.1;Parent=gene-RAF_RS01705;Dbxref=GenBank:WP_012719504.1;Name=WP_012719504.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443283.1;locus_tag=RAF_RS01705;product=HlyD family secretion protein;protein_id=WP_012719504.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	331510	331696	.	+	.	ID=gene-RAF_RS10510;Name=RAF_RS10510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10510;pseudo=true
NC_012633.1	Protein Homology	CDS	331510	331696	.	+	0	ID=cds-RAF_RS10510;Parent=gene-RAF_RS10510;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410033.1;locus_tag=RAF_RS10510;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	332215	332418	.	-	.	ID=gene-RAF_RS01710;Name=RAF_RS01710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01710;old_locus_tag=RAF_ORF0305
NC_012633.1	Protein Homology	CDS	332215	332418	.	-	0	ID=cds-WP_012719505.1;Parent=gene-RAF_RS01710;Dbxref=GenBank:WP_012719505.1;Name=WP_012719505.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917038.1;locus_tag=RAF_RS01710;product=hypothetical protein;protein_id=WP_012719505.1;transl_table=11
NC_012633.1	RefSeq	gene	332415	332657	.	-	.	ID=gene-RAF_RS01715;Name=RAF_RS01715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01715;old_locus_tag=RAF_ORF0306
NC_012633.1	Protein Homology	CDS	332415	332657	.	-	0	ID=cds-WP_012719506.1;Parent=gene-RAF_RS01715;Dbxref=GenBank:WP_012719506.1;Name=WP_012719506.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010886244.1;locus_tag=RAF_RS01715;product=BolA family protein;protein_id=WP_012719506.1;transl_table=11
NC_012633.1	RefSeq	gene	332712	333938	.	+	.	ID=gene-RAF_RS01720;Name=RAF_RS01720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01720;old_locus_tag=RAF_ORF0307
NC_012633.1	Protein Homology	CDS	332712	333938	.	+	0	ID=cds-WP_012719507.1;Parent=gene-RAF_RS01720;Dbxref=GenBank:WP_012719507.1;Name=WP_012719507.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719507.1;locus_tag=RAF_RS01720;product=EAL domain-containing protein;protein_id=WP_012719507.1;transl_table=11
NC_012633.1	RefSeq	gene	334159	335616	.	+	.	ID=gene-RAF_RS01725;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=RAF_RS01725;old_locus_tag=RAF_ORF0308
NC_012633.1	Protein Homology	CDS	334159	335616	.	+	0	ID=cds-WP_012719508.1;Parent=gene-RAF_RS01725;Dbxref=GenBank:WP_012719508.1;Name=WP_012719508.1;Ontology_term=GO:0009252,GO:0008763;gbkey=CDS;gene=murC;go_function=UDP-N-acetylmuramate-L-alanine ligase activity|0008763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996331.1;locus_tag=RAF_RS01725;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_012719508.1;transl_table=11
NC_012633.1	RefSeq	gene	335748	336635	.	+	.	ID=gene-RAF_RS01730;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=RAF_RS01730;old_locus_tag=RAF_ORF0309
NC_012633.1	Protein Homology	CDS	335748	336635	.	+	0	ID=cds-WP_041471825.1;Parent=gene-RAF_RS01730;Dbxref=GenBank:WP_041471825.1;Name=WP_041471825.1;Ontology_term=GO:0008762,GO:0071949;gbkey=CDS;gene=murB;go_function=UDP-N-acetylmuramate dehydrogenase activity|0008762||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443288.1;locus_tag=RAF_RS01730;product=UDP-N-acetylmuramate dehydrogenase;protein_id=WP_041471825.1;transl_table=11
NC_012633.1	RefSeq	gene	336879	337844	.	+	.	ID=gene-RAF_RS01735;Name=RAF_RS01735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01735;old_locus_tag=RAF_ORF0310
NC_012633.1	Protein Homology	CDS	336879	337844	.	+	0	ID=cds-WP_012719510.1;Parent=gene-RAF_RS01735;Dbxref=GenBank:WP_012719510.1;Name=WP_012719510.1;Ontology_term=GO:0009252,GO:0005524,GO:0008716,GO:0046872;gbkey=CDS;go_function=ATP binding|0005524||IEA,D-alanine-D-alanine ligase activity|0008716||IEA,metal ion binding|0046872||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976988.1;locus_tag=RAF_RS01735;product=D-alanine--D-alanine ligase;protein_id=WP_012719510.1;transl_table=11
NC_012633.1	RefSeq	gene	337841	338644	.	+	.	ID=gene-RAF_RS01740;Name=RAF_RS01740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01740;old_locus_tag=RAF_ORF0311
NC_012633.1	Protein Homology	CDS	337841	338644	.	+	0	ID=cds-WP_012719511.1;Parent=gene-RAF_RS01740;Dbxref=GenBank:WP_012719511.1;Name=WP_012719511.1;Ontology_term=GO:0043093,GO:0051301;gbkey=CDS;go_process=FtsZ-dependent cytokinesis|0043093||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190708.1;locus_tag=RAF_RS01740;product=cell division protein FtsQ/DivIB;protein_id=WP_012719511.1;transl_table=11
NC_012633.1	RefSeq	gene	338772	340007	.	+	.	ID=gene-RAF_RS01745;Name=ftsA;gbkey=Gene;gene=ftsA;gene_biotype=protein_coding;locus_tag=RAF_RS01745;old_locus_tag=RAF_ORF0312
NC_012633.1	Protein Homology	CDS	338772	340007	.	+	0	ID=cds-WP_012719512.1;Parent=gene-RAF_RS01745;Dbxref=GenBank:WP_012719512.1;Name=WP_012719512.1;Ontology_term=GO:0043093,GO:0005515,GO:0005524;gbkey=CDS;gene=ftsA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA;go_process=FtsZ-dependent cytokinesis|0043093||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010976990.1;locus_tag=RAF_RS01745;product=cell division protein FtsA;protein_id=WP_012719512.1;transl_table=11
NC_012633.1	RefSeq	gene	340150	340626	.	-	.	ID=gene-RAF_RS01750;Name=RAF_RS01750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01750;old_locus_tag=RAF_ORF0313
NC_012633.1	Protein Homology	CDS	340150	340626	.	-	0	ID=cds-WP_012719513.1;Parent=gene-RAF_RS01750;Dbxref=GenBank:WP_012719513.1;Name=WP_012719513.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443292.1;locus_tag=RAF_RS01750;product=NfeD family protein;protein_id=WP_012719513.1;transl_table=11
NC_012633.1	RefSeq	gene	340610	341137	.	-	.	ID=gene-RAF_RS01755;Name=RAF_RS01755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01755;old_locus_tag=RAF_ORF0314
NC_012633.1	Protein Homology	CDS	340610	341137	.	-	0	ID=cds-WP_012719514.1;Parent=gene-RAF_RS01755;Dbxref=GenBank:WP_012719514.1;Name=WP_012719514.1;Ontology_term=GO:0009055,GO:0020037,GO:0046872;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271346.1;locus_tag=RAF_RS01755;product=c-type cytochrome;protein_id=WP_012719514.1;transl_table=11
NC_012633.1	RefSeq	gene	341251	342321	.	+	.	ID=gene-RAF_RS01760;Name=RAF_RS01760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01760;old_locus_tag=RAF_ORF0315
NC_012633.1	Protein Homology	CDS	341251	342321	.	+	0	ID=cds-WP_012719515.1;Parent=gene-RAF_RS01760;Dbxref=GenBank:WP_012719515.1;Name=WP_012719515.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945539.1;locus_tag=RAF_RS01760;product=hypothetical protein;protein_id=WP_012719515.1;transl_table=11
NC_012633.1	RefSeq	gene	342330	343196	.	-	.	ID=gene-RAF_RS01765;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=RAF_RS01765;old_locus_tag=RAF_ORF0316
NC_012633.1	Protein Homology	CDS	342330	343196	.	-	0	ID=cds-WP_012719516.1;Parent=gene-RAF_RS01765;Dbxref=GenBank:WP_012719516.1;Name=WP_012719516.1;Ontology_term=GO:0009245,GO:0103117;gbkey=CDS;gene=lpxC;go_function=UDP-3-O-acyl-N-acetylglucosamine deacetylase activity|0103117||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596080.1;locus_tag=RAF_RS01765;product=UDP-3-O-acyl-N-acetylglucosamine deacetylase;protein_id=WP_012719516.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	343421	343570	.	+	.	ID=gene-RAF_RS08540;Name=RAF_RS08540;end_range=343570,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS08540;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	343421	343570	.	+	0	ID=cds-RAF_RS08540;Parent=gene-RAF_RS08540;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=343570,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719311.1;locus_tag=RAF_RS08540;partial=true;product=palindromic element RPE1 domain-containing protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	343560	344708	.	-	.	ID=gene-RAF_RS01770;Name=RAF_RS01770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01770;old_locus_tag=RAF_ORF0317
NC_012633.1	Protein Homology	CDS	343560	344708	.	-	0	ID=cds-WP_012719517.1;Parent=gene-RAF_RS01770;Dbxref=GenBank:WP_012719517.1;Name=WP_012719517.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917046.1;locus_tag=RAF_RS01770;product=MFS transporter;protein_id=WP_012719517.1;transl_table=11
NC_012633.1	RefSeq	gene	345136	347208	.	+	.	ID=gene-RAF_RS01775;Name=RAF_RS01775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01775;old_locus_tag=RAF_ORF0318
NC_012633.1	Protein Homology	CDS	345136	347208	.	+	0	ID=cds-WP_012719518.1;Parent=gene-RAF_RS01775;Dbxref=GenBank:WP_012719518.1;Name=WP_012719518.1;Ontology_term=GO:0006396,GO:0003723,GO:0004540;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA nuclease activity|0004540||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364522.1;locus_tag=RAF_RS01775;product=Rne/Rng family ribonuclease;protein_id=WP_012719518.1;transl_table=11
NC_012633.1	RefSeq	gene	347454	348467	.	+	.	ID=gene-RAF_RS01780;Name=RAF_RS01780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01780;old_locus_tag=RAF_ORF0319
NC_012633.1	Protein Homology	CDS	347454	348467	.	+	0	ID=cds-WP_012719519.1;Parent=gene-RAF_RS01780;Dbxref=GenBank:WP_012719519.1;Name=WP_012719519.1;Ontology_term=GO:0006783,GO:0017004,GO:0016491,GO:0020037,GO:0046872;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;go_process=heme biosynthetic process|0006783||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041404564.1;locus_tag=RAF_RS01780;product=COX15/CtaA family protein;protein_id=WP_012719519.1;transl_table=11
NC_012633.1	RefSeq	gene	348480	349391	.	+	.	ID=gene-RAF_RS01785;Name=RAF_RS01785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01785;old_locus_tag=RAF_ORF0320
NC_012633.1	Protein Homology	CDS	348480	349391	.	+	0	ID=cds-WP_012719520.1;Parent=gene-RAF_RS01785;Dbxref=GenBank:WP_012719520.1;Name=WP_012719520.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190715.1;locus_tag=RAF_RS01785;product=RluA family pseudouridine synthase;protein_id=WP_012719520.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	349373	349501	.	-	.	ID=gene-RAF_RS07470;Name=RAF_RS07470;end_range=349501,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS07470;partial=true;pseudo=true;start_range=.,349373
NC_012633.1	Protein Homology	CDS	349373	349501	.	-	0	ID=cds-RAF_RS07470;Parent=gene-RAF_RS07470;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=349501,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443419.1;locus_tag=RAF_RS07470;partial=true;product=palindromic element RPE1 domain-containing protein;pseudo=true;start_range=.,349373;transl_table=11
NC_012633.1	RefSeq	gene	349546	350727	.	+	.	ID=gene-RAF_RS01790;Name=RAF_RS01790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01790;old_locus_tag=RAF_ORF0321
NC_012633.1	Protein Homology	CDS	349546	350727	.	+	0	ID=cds-WP_012719521.1;Parent=gene-RAF_RS01790;Dbxref=GenBank:WP_012719521.1;Name=WP_012719521.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830682.1;locus_tag=RAF_RS01790;product=serine hydrolase domain-containing protein;protein_id=WP_012719521.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	350743	350861	.	+	.	ID=gene-RAF_RS10690;Name=RAF_RS10690;end_range=350861,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10690;partial=true;pseudo=true;start_range=.,350743
NC_012633.1	Protein Homology	CDS	350743	350861	.	+	0	ID=cds-RAF_RS10690;Parent=gene-RAF_RS10690;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=350861,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012149551.1;locus_tag=RAF_RS10690;partial=true;product=palindromic element RPE1 domain-containing protein;pseudo=true;start_range=.,350743;transl_table=11
NC_012633.1	RefSeq	gene	350874	351689	.	+	.	ID=gene-RAF_RS01795;Name=xth;gbkey=Gene;gene=xth;gene_biotype=protein_coding;locus_tag=RAF_RS01795;old_locus_tag=RAF_ORF0322
NC_012633.1	Protein Homology	CDS	350874	351689	.	+	0	ID=cds-WP_012719522.1;Parent=gene-RAF_RS01795;Dbxref=GenBank:WP_012719522.1;Name=WP_012719522.1;Ontology_term=GO:0006281,GO:0008311;gbkey=CDS;gene=xth;go_function=double-stranded DNA 3'-5' DNA exonuclease activity|0008311||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830683.1;locus_tag=RAF_RS01795;product=exodeoxyribonuclease III;protein_id=WP_012719522.1;transl_table=11
NC_012633.1	RefSeq	gene	351712	352692	.	+	.	ID=gene-RAF_RS01800;Name=pdhA;gbkey=Gene;gene=pdhA;gene_biotype=protein_coding;locus_tag=RAF_RS01800;old_locus_tag=RAF_ORF0323
NC_012633.1	Protein Homology	CDS	351712	352692	.	+	0	ID=cds-WP_012719523.1;Parent=gene-RAF_RS01800;Dbxref=GenBank:WP_012719523.1;Name=WP_012719523.1;Ontology_term=GO:0006086,GO:0004739,GO:0045254;gbkey=CDS;gene=pdhA;go_component=pyruvate dehydrogenase complex|0045254||IEA;go_function=pyruvate dehydrogenase (acetyl-transferring) activity|0004739||IEA;go_process=acetyl-CoA biosynthetic process from pyruvate|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977002.1;locus_tag=RAF_RS01800;product=pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha;protein_id=WP_012719523.1;transl_table=11
NC_012633.1	RefSeq	gene	352856	353836	.	+	.	ID=gene-RAF_RS01805;Name=RAF_RS01805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01805;old_locus_tag=RAF_ORF0324
NC_012633.1	Protein Homology	CDS	352856	353836	.	+	0	ID=cds-WP_012719524.1;Parent=gene-RAF_RS01805;Dbxref=GenBank:WP_012719524.1;Name=WP_012719524.1;Ontology_term=GO:0006086,GO:0004739;gbkey=CDS;go_function=pyruvate dehydrogenase (acetyl-transferring) activity|0004739||IEA;go_process=acetyl-CoA biosynthetic process from pyruvate|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190719.1;locus_tag=RAF_RS01805;product=pyruvate dehydrogenase complex E1 component subunit beta;protein_id=WP_012719524.1;transl_table=11
NC_012633.1	RefSeq	gene	353974	355803	.	-	.	ID=gene-RAF_RS01810;Name=typA;gbkey=Gene;gene=typA;gene_biotype=protein_coding;locus_tag=RAF_RS01810;old_locus_tag=RAF_ORF0325
NC_012633.1	Protein Homology	CDS	353974	355803	.	-	0	ID=cds-WP_010977004.1;Parent=gene-RAF_RS01810;Dbxref=GenBank:WP_010977004.1;Name=WP_010977004.1;Ontology_term=GO:0006412,GO:0006950,GO:0003924,GO:0005525;gbkey=CDS;gene=typA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=translation|0006412||IEA,response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443205.1;locus_tag=RAF_RS01810;product=translational GTPase TypA;protein_id=WP_010977004.1;transl_table=11
NC_012633.1	RefSeq	gene	355952	356173	.	+	.	ID=gene-RAF_RS01815;Name=RAF_RS01815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01815
NC_012633.1	Protein Homology	CDS	355952	356173	.	+	0	ID=cds-WP_041471826.1;Parent=gene-RAF_RS01815;Dbxref=GenBank:WP_041471826.1;Name=WP_041471826.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014413007.1;locus_tag=RAF_RS01815;product=hypothetical protein;protein_id=WP_041471826.1;transl_table=11
NC_012633.1	RefSeq	gene	356157	356369	.	+	.	ID=gene-RAF_RS09670;Name=RAF_RS09670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09670
NC_012633.1	GeneMarkS-2+	CDS	356157	356369	.	+	0	ID=cds-WP_234943917.1;Parent=gene-RAF_RS09670;Dbxref=GenBank:WP_234943917.1;Name=WP_234943917.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09670;product=hypothetical protein;protein_id=WP_234943917.1;transl_table=11
NC_012633.1	RefSeq	gene	356533	356676	.	+	.	ID=gene-RAF_RS09215;Name=RAF_RS09215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09215
NC_012633.1	Protein Homology	CDS	356533	356676	.	+	0	ID=cds-WP_200858176.1;Parent=gene-RAF_RS09215;Dbxref=GenBank:WP_200858176.1;Name=WP_200858176.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150565.1;locus_tag=RAF_RS09215;product=hypothetical protein;protein_id=WP_200858176.1;transl_table=11
NC_012633.1	RefSeq	gene	356897	357451	.	+	.	ID=gene-RAF_RS01825;Name=RAF_RS01825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01825;old_locus_tag=RAF_ORF0326
NC_012633.1	Protein Homology	CDS	356897	357451	.	+	0	ID=cds-WP_010977007.1;Parent=gene-RAF_RS01825;Dbxref=GenBank:WP_010977007.1;Name=WP_010977007.1;Ontology_term=GO:0051082,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=unfolded protein binding|0051082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443209.1;locus_tag=RAF_RS01825;product=OmpH family outer membrane protein;protein_id=WP_010977007.1;transl_table=11
NC_012633.1	RefSeq	gene	357633	359084	.	+	.	ID=gene-RAF_RS01830;Name=RAF_RS01830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01830;old_locus_tag=RAF_ORF0327
NC_012633.1	Protein Homology	CDS	357633	359084	.	+	0	ID=cds-WP_012719525.1;Parent=gene-RAF_RS01830;Dbxref=GenBank:WP_012719525.1;Name=WP_012719525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010886251.1;locus_tag=RAF_RS01830;product=NADP-dependent isocitrate dehydrogenase;protein_id=WP_012719525.1;transl_table=11
NC_012633.1	RefSeq	gene	359199	359519	.	+	.	ID=gene-RAF_RS01835;Name=RAF_RS01835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01835;old_locus_tag=RAF_ORF0328
NC_012633.1	Protein Homology	CDS	359199	359519	.	+	0	ID=cds-WP_004996272.1;Parent=gene-RAF_RS01835;Dbxref=GenBank:WP_004996272.1;Name=WP_004996272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597332.1;locus_tag=RAF_RS01835;product=Na+/H+ antiporter subunit G;protein_id=WP_004996272.1;transl_table=11
NC_012633.1	RefSeq	gene	359583	360656	.	+	.	ID=gene-RAF_RS01840;Name=RAF_RS01840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01840;old_locus_tag=RAF_ORF0329
NC_012633.1	Protein Homology	CDS	359583	360656	.	+	0	ID=cds-WP_012719526.1;Parent=gene-RAF_RS01840;Dbxref=GenBank:WP_012719526.1;Name=WP_012719526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736565.1;locus_tag=RAF_RS01840;product=DUF4040 domain-containing protein;protein_id=WP_012719526.1;transl_table=11
NC_012633.1	RefSeq	gene	360649	361296	.	+	.	ID=gene-RAF_RS01845;Name=RAF_RS01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01845;old_locus_tag=RAF_ORF0330
NC_012633.1	Protein Homology	CDS	360649	361296	.	+	0	ID=cds-WP_012719527.1;Parent=gene-RAF_RS01845;Dbxref=GenBank:WP_012719527.1;Name=WP_012719527.1;Ontology_term=GO:0015886,GO:0017004,GO:0015232,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=heme transmembrane transporter activity|0015232||IEA;go_process=heme transport|0015886||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996266.1;locus_tag=RAF_RS01845;product=heme exporter protein CcmB;protein_id=WP_012719527.1;transl_table=11
NC_012633.1	RefSeq	gene	361371	361829	.	+	.	ID=gene-RAF_RS01850;Name=RAF_RS01850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01850;old_locus_tag=RAF_ORF0331
NC_012633.1	Protein Homology	CDS	361371	361829	.	+	0	ID=cds-WP_012719528.1;Parent=gene-RAF_RS01850;Dbxref=GenBank:WP_012719528.1;Name=WP_012719528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271327.1;locus_tag=RAF_RS01850;product=DUF2670 domain-containing protein;protein_id=WP_012719528.1;transl_table=11
NC_012633.1	RefSeq	gene	361851	362384	.	+	.	ID=gene-RAF_RS01855;Name=petA;gbkey=Gene;gene=petA;gene_biotype=protein_coding;locus_tag=RAF_RS01855;old_locus_tag=RAF_ORF0332
NC_012633.1	Protein Homology	CDS	361851	362384	.	+	0	ID=cds-WP_004996261.1;Parent=gene-RAF_RS01855;Dbxref=GenBank:WP_004996261.1;Name=WP_004996261.1;Ontology_term=GO:0009060,GO:0008121,GO:0009055,GO:0045275;gbkey=CDS;gene=petA;go_component=respiratory chain complex III|0045275||IEA;go_function=ubiquinol-cytochrome-c reductase activity|0008121||IEA,electron transfer activity|0009055||IEA;go_process=aerobic respiration|0009060||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996261.1;locus_tag=RAF_RS01855;product=ubiquinol-cytochrome c reductase iron-sulfur subunit;protein_id=WP_004996261.1;transl_table=11
NC_012633.1	RefSeq	gene	362391	363587	.	+	.	ID=gene-RAF_RS01860;Name=RAF_RS01860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01860;old_locus_tag=RAF_ORF0333
NC_012633.1	Protein Homology	CDS	362391	363587	.	+	0	ID=cds-WP_012719529.1;Parent=gene-RAF_RS01860;Dbxref=GenBank:WP_012719529.1;Name=WP_012719529.1;Ontology_term=GO:0022904,GO:0008121,GO:0009055,GO:0020037,GO:0046872;gbkey=CDS;go_function=ubiquinol-cytochrome-c reductase activity|0008121||IEA,electron transfer activity|0009055||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190728.1;locus_tag=RAF_RS01860;product=cytochrome b;protein_id=WP_012719529.1;transl_table=11
NC_012633.1	RefSeq	gene	363808	363906	.	+	.	ID=gene-RAF_RS09675;Name=RAF_RS09675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09675
NC_012633.1	Protein Homology	CDS	363808	363906	.	+	0	ID=cds-WP_231287771.1;Parent=gene-RAF_RS09675;Dbxref=GenBank:WP_231287771.1;Name=WP_231287771.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013691.5;locus_tag=RAF_RS09675;product=hypothetical protein;protein_id=WP_231287771.1;transl_table=11
NC_012633.1	RefSeq	gene	364078	364833	.	+	.	ID=gene-RAF_RS01865;Name=RAF_RS01865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01865;old_locus_tag=RAF_ORF0334
NC_012633.1	Protein Homology	CDS	364078	364833	.	+	0	ID=cds-WP_012719530.1;Parent=gene-RAF_RS01865;Dbxref=GenBank:WP_012719530.1;Name=WP_012719530.1;Ontology_term=GO:0008121,GO:0009055,GO:0020037,GO:0046872;gbkey=CDS;go_function=ubiquinol-cytochrome-c reductase activity|0008121||IEA,electron transfer activity|0009055||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719530.1;locus_tag=RAF_RS01865;product=cytochrome c1;protein_id=WP_012719530.1;transl_table=11
NC_012633.1	RefSeq	gene	365109	365351	.	+	.	ID=gene-RAF_RS01870;Name=RAF_RS01870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01870
NC_012633.1	GeneMarkS-2+	CDS	365109	365351	.	+	0	ID=cds-WP_234943918.1;Parent=gene-RAF_RS01870;Dbxref=GenBank:WP_234943918.1;Name=WP_234943918.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS01870;product=hypothetical protein;protein_id=WP_234943918.1;transl_table=11
NC_012633.1	RefSeq	gene	365393	365563	.	+	.	ID=gene-RAF_RS09220;Name=RAF_RS09220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09220
NC_012633.1	Protein Homology	CDS	365393	365563	.	+	0	ID=cds-WP_016769997.1;Parent=gene-RAF_RS09220;Dbxref=GenBank:WP_016769997.1;Name=WP_016769997.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016769997.1;locus_tag=RAF_RS09220;product=hypothetical protein;protein_id=WP_016769997.1;transl_table=11
NC_012633.1	RefSeq	gene	365624	366127	.	+	.	ID=gene-RAF_RS01880;Name=RAF_RS01880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01880;old_locus_tag=RAF_ORF0337
NC_012633.1	Protein Homology	CDS	365624	366127	.	+	0	ID=cds-WP_012719531.1;Parent=gene-RAF_RS01880;Dbxref=GenBank:WP_012719531.1;Name=WP_012719531.1;Ontology_term=GO:0006950;gbkey=CDS;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443219.1;locus_tag=RAF_RS01880;product=Hsp20/alpha crystallin family protein;protein_id=WP_012719531.1;transl_table=11
NC_012633.1	RefSeq	gene	366365	366550	.	-	.	ID=gene-RAF_RS01885;Name=RAF_RS01885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01885
NC_012633.1	Protein Homology	CDS	366365	366550	.	-	0	ID=cds-WP_012150576.1;Parent=gene-RAF_RS01885;Dbxref=GenBank:WP_012150576.1;Name=WP_012150576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362869.1;locus_tag=RAF_RS01885;product=hypothetical protein;protein_id=WP_012150576.1;transl_table=11
NC_012633.1	RefSeq	gene	366609	366749	.	-	.	ID=gene-RAF_RS09225;Name=RAF_RS09225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09225
NC_012633.1	Protein Homology	CDS	366609	366749	.	-	0	ID=cds-WP_200858177.1;Parent=gene-RAF_RS09225;Dbxref=GenBank:WP_200858177.1;Name=WP_200858177.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410506.1;locus_tag=RAF_RS09225;product=hypothetical protein;protein_id=WP_200858177.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	366986	367312	.	-	.	ID=gene-RAF_RS10515;Name=RAF_RS10515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10515;pseudo=true
NC_012633.1	Protein Homology	CDS	366986	367312	.	-	0	ID=cds-RAF_RS10515;Parent=gene-RAF_RS10515;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410070.1;locus_tag=RAF_RS10515;product=PDDEXK nuclease domain-containing protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	pseudogene	367328	367540	.	-	.	ID=gene-RAF_RS10695;Name=RAF_RS10695;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10695;partial=true;pseudo=true;start_range=.,367328
NC_012633.1	Protein Homology	CDS	367328	367540	.	-	0	ID=cds-RAF_RS10695;Parent=gene-RAF_RS10695;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018009.5;locus_tag=RAF_RS10695;partial=true;product=PDDEXK nuclease domain-containing protein;pseudo=true;start_range=.,367328;transl_table=11
NC_012633.1	RefSeq	gene	367537	367755	.	-	.	ID=gene-RAF_RS09690;Name=RAF_RS09690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09690
NC_012633.1	Protein Homology	CDS	367537	367755	.	-	0	ID=cds-WP_234943921.1;Parent=gene-RAF_RS09690;Dbxref=GenBank:WP_234943921.1;Name=WP_234943921.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF036995.5;locus_tag=RAF_RS09690;product=DUF1016 N-terminal domain-containing protein;protein_id=WP_234943921.1;transl_table=11
NC_012633.1	RefSeq	gene	367890	368012	.	-	.	ID=gene-RAF_RS10290;Name=RAF_RS10290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10290
NC_012633.1	Protein Homology	CDS	367890	368012	.	-	0	ID=cds-WP_268738932.1;Parent=gene-RAF_RS10290;Dbxref=GenBank:WP_268738932.1;Name=WP_268738932.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996246.1;locus_tag=RAF_RS10290;product=hypothetical protein;protein_id=WP_268738932.1;transl_table=11
NC_012633.1	RefSeq	gene	368022	369128	.	-	.	ID=gene-RAF_RS01900;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;locus_tag=RAF_RS01900;old_locus_tag=RAF_ORF0343
NC_012633.1	Protein Homology	CDS	368022	369128	.	-	0	ID=cds-WP_012719532.1;Parent=gene-RAF_RS01900;Dbxref=GenBank:WP_012719532.1;Name=WP_012719532.1;Ontology_term=GO:0006415,GO:0016149,GO:0005737;gbkey=CDS;gene=prfB;go_component=cytoplasm|0005737||IEA;go_function=translation release factor activity%2C codon specific|0016149||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719532.1;locus_tag=RAF_RS01900;product=peptide chain release factor 2;protein_id=WP_012719532.1;transl_table=11
NC_012633.1	RefSeq	gene	369247	371049	.	+	.	ID=gene-RAF_RS01905;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=RAF_RS01905;old_locus_tag=RAF_ORF0344
NC_012633.1	Protein Homology	CDS	369247	371049	.	+	0	ID=cds-WP_012719533.1;Parent=gene-RAF_RS01905;Dbxref=GenBank:WP_012719533.1;Name=WP_012719533.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=lepA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271316.1;locus_tag=RAF_RS01905;product=translation elongation factor 4;protein_id=WP_012719533.1;transl_table=11
NC_012633.1	RefSeq	gene	371141	371215	.	+	.	ID=gene-RAF_RS01910;Name=RAF_RS01910;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS01910;old_locus_tag=RAF_RNA10
NC_012633.1	tRNAscan-SE	tRNA	371141	371215	.	+	.	ID=rna-RAF_RS01910;Parent=gene-RAF_RS01910;anticodon=(pos:371173..371175);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS01910;product=tRNA-Asn
NC_012633.1	tRNAscan-SE	exon	371141	371215	.	+	.	ID=exon-RAF_RS01910-1;Parent=rna-RAF_RS01910;anticodon=(pos:371173..371175);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS01910;product=tRNA-Asn
NC_012633.1	RefSeq	gene	372002	372142	.	-	.	ID=gene-RAF_RS10700;Name=RAF_RS10700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10700;old_locus_tag=RAF_ORF0345
NC_012633.1	Protein Homology	CDS	372002	372142	.	-	0	ID=cds-WP_012719534.1;Parent=gene-RAF_RS10700;Dbxref=GenBank:WP_012719534.1;Name=WP_012719534.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: protein motif:HMM:TIGR02607.1;locus_tag=RAF_RS10700;product=HigA family addiction module antitoxin;protein_id=WP_012719534.1;transl_table=11
NC_012633.1	RefSeq	gene	372150	372311	.	-	.	ID=gene-RAF_RS01915;Name=RAF_RS01915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01915
NC_012633.1	Protein Homology	CDS	372150	372311	.	-	0	ID=cds-WP_041472002.1;Parent=gene-RAF_RS01915;Dbxref=GenBank:WP_041472002.1;Name=WP_041472002.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410511.1;locus_tag=RAF_RS01915;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_041472002.1;transl_table=11
NC_012633.1	RefSeq	gene	372336	372602	.	+	.	ID=gene-RAF_RS09230;Name=RAF_RS09230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09230
NC_012633.1	GeneMarkS-2+	CDS	372336	372602	.	+	0	ID=cds-WP_049752703.1;Parent=gene-RAF_RS09230;Dbxref=GenBank:WP_049752703.1;Name=WP_049752703.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09230;product=hypothetical protein;protein_id=WP_049752703.1;transl_table=11
NC_012633.1	RefSeq	gene	372631	372945	.	+	.	ID=gene-RAF_RS09235;Name=RAF_RS09235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09235
NC_012633.1	GeneMarkS-2+	CDS	372631	372945	.	+	0	ID=cds-WP_049752704.1;Parent=gene-RAF_RS09235;Dbxref=GenBank:WP_049752704.1;Name=WP_049752704.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09235;product=hypothetical protein;protein_id=WP_049752704.1;transl_table=11
NC_012633.1	RefSeq	gene	373021	373257	.	+	.	ID=gene-RAF_RS09695;Name=RAF_RS09695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09695
NC_012633.1	Protein Homology	CDS	373021	373257	.	+	0	ID=cds-WP_041471827.1;Parent=gene-RAF_RS09695;Dbxref=GenBank:WP_041471827.1;Name=WP_041471827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830830.1;locus_tag=RAF_RS09695;product=hypothetical protein;protein_id=WP_041471827.1;transl_table=11
NC_012633.1	RefSeq	gene	373480	373656	.	+	.	ID=gene-RAF_RS09240;Name=RAF_RS09240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09240
NC_012633.1	GeneMarkS-2+	CDS	373480	373656	.	+	0	ID=cds-WP_200858178.1;Parent=gene-RAF_RS09240;Dbxref=GenBank:WP_200858178.1;Name=WP_200858178.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09240;product=hypothetical protein;protein_id=WP_200858178.1;transl_table=11
NC_012633.1	RefSeq	gene	373703	373867	.	+	.	ID=gene-RAF_RS09245;Name=RAF_RS09245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09245
NC_012633.1	GeneMarkS-2+	CDS	373703	373867	.	+	0	ID=cds-WP_200858179.1;Parent=gene-RAF_RS09245;Dbxref=GenBank:WP_200858179.1;Name=WP_200858179.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09245;product=hypothetical protein;protein_id=WP_200858179.1;transl_table=11
NC_012633.1	RefSeq	gene	374644	375240	.	+	.	ID=gene-RAF_RS01940;Name=RAF_RS01940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01940;old_locus_tag=RAF_ORF0348
NC_012633.1	Protein Homology	CDS	374644	375240	.	+	0	ID=cds-WP_012719535.1;Parent=gene-RAF_RS01940;Dbxref=GenBank:WP_012719535.1;Name=WP_012719535.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719535.1;locus_tag=RAF_RS01940;product=hypothetical protein;protein_id=WP_012719535.1;transl_table=11
NC_012633.1	RefSeq	gene	375395	375886	.	+	.	ID=gene-RAF_RS01945;Name=RAF_RS01945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01945
NC_012633.1	Protein Homology	CDS	375395	375886	.	+	0	ID=cds-WP_041471829.1;Parent=gene-RAF_RS01945;Dbxref=GenBank:WP_041471829.1;Name=WP_041471829.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996222.1;locus_tag=RAF_RS01945;product=HD domain-containing protein;protein_id=WP_041471829.1;transl_table=11
NC_012633.1	RefSeq	gene	376200	376532	.	+	.	ID=gene-RAF_RS09700;Name=RAF_RS09700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09700;old_locus_tag=RAF_ORF0350
NC_012633.1	Protein Homology	CDS	376200	376532	.	+	0	ID=cds-WP_012719537.1;Parent=gene-RAF_RS09700;Dbxref=GenBank:WP_012719537.1;Name=WP_012719537.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719537.1;locus_tag=RAF_RS09700;product=hypothetical protein;protein_id=WP_012719537.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	376539	376625	.	-	.	ID=gene-RAF_RS10520;Name=RAF_RS10520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10520;partial=true;pseudo=true;start_range=.,376539
NC_012633.1	Protein Homology	CDS	376539	376625	.	-	0	ID=cds-RAF_RS10520;Parent=gene-RAF_RS10520;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012312.5;locus_tag=RAF_RS10520;partial=true;product=MFS transporter;pseudo=true;start_range=.,376539;transl_table=11
NC_012633.1	RefSeq	gene	376937	378037	.	-	.	ID=gene-RAF_RS01955;Name=rodA;gbkey=Gene;gene=rodA;gene_biotype=protein_coding;locus_tag=RAF_RS01955;old_locus_tag=RAF_ORF0351
NC_012633.1	Protein Homology	CDS	376937	378037	.	-	0	ID=cds-WP_012719538.1;Parent=gene-RAF_RS01955;Dbxref=GenBank:WP_012719538.1;Name=WP_012719538.1;Ontology_term=GO:0008360,GO:0016020;gbkey=CDS;gene=rodA;go_component=membrane|0016020||IEA;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150587.1;locus_tag=RAF_RS01955;product=rod shape-determining protein RodA;protein_id=WP_012719538.1;transl_table=11
NC_012633.1	RefSeq	gene	378193	380382	.	-	.	ID=gene-RAF_RS01960;Name=RAF_RS01960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01960;old_locus_tag=RAF_ORF0352
NC_012633.1	Protein Homology	CDS	378193	380382	.	-	0	ID=cds-WP_012719539.1;Parent=gene-RAF_RS01960;Dbxref=GenBank:WP_012719539.1;Name=WP_012719539.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977032.1;locus_tag=RAF_RS01960;product=prolyl oligopeptidase family serine peptidase;protein_id=WP_012719539.1;transl_table=11
NC_012633.1	RefSeq	gene	380561	382078	.	-	.	ID=gene-RAF_RS01965;Name=RAF_RS01965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01965;old_locus_tag=RAF_ORF0353
NC_012633.1	Protein Homology	CDS	380561	382078	.	-	0	ID=cds-WP_012719540.1;Parent=gene-RAF_RS01965;Dbxref=GenBank:WP_012719540.1;Name=WP_012719540.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012262294.1;locus_tag=RAF_RS01965;product=proton-conducting transporter membrane subunit;protein_id=WP_012719540.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	382080	382485	.	-	.	ID=gene-RAF_RS09710;Name=vapC;gbkey=Gene;gene=vapC;gene_biotype=pseudogene;gene_synonym=vapC1;locus_tag=RAF_RS09710;pseudo=true
NC_012633.1	Protein Homology	CDS	382080	382485	.	-	0	ID=cds-RAF_RS09710;Parent=gene-RAF_RS09710;Note=frameshifted;gbkey=CDS;gene=vapC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270789.1;locus_tag=RAF_RS09710;product=ribonuclease VapC;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	382476	382763	.	-	.	ID=gene-RAF_RS01980;Name=vapB;gbkey=Gene;gene=vapB;gene_biotype=protein_coding;gene_synonym=vapB1;locus_tag=RAF_RS01980;old_locus_tag=RAF_ORF0354
NC_012633.1	Protein Homology	CDS	382476	382763	.	-	0	ID=cds-WP_012150592.1;Parent=gene-RAF_RS01980;Dbxref=GenBank:WP_012150592.1;Name=WP_012150592.1;gbkey=CDS;gene=vapB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410083.1;locus_tag=RAF_RS01980;product=type II toxin-antitoxin system antitoxin VapB;protein_id=WP_012150592.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	382794	382912	.	-	.	ID=gene-RAF_RS08550;Name=RAF_RS08550;end_range=382912,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS08550;partial=true;pseudo=true;start_range=.,382794
NC_012633.1	Protein Homology	CDS	382794	382912	.	-	0	ID=cds-RAF_RS08550;Parent=gene-RAF_RS08550;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=382912,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728062.1;locus_tag=RAF_RS08550;partial=true;product=palindromic element RPE5 domain-containing protein;pseudo=true;start_range=.,382794;transl_table=11
NC_012633.1	RefSeq	gene	382950	384413	.	-	.	ID=gene-RAF_RS01985;Name=RAF_RS01985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01985;old_locus_tag=RAF_ORF0355
NC_012633.1	Protein Homology	CDS	382950	384413	.	-	0	ID=cds-WP_012719541.1;Parent=gene-RAF_RS01985;Dbxref=GenBank:WP_012719541.1;Name=WP_012719541.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364552.1;locus_tag=RAF_RS01985;product=proton-conducting transporter membrane subunit;protein_id=WP_012719541.1;transl_table=11
NC_012633.1	RefSeq	gene	384560	385861	.	-	.	ID=gene-RAF_RS01990;Name=RAF_RS01990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01990;old_locus_tag=RAF_ORF0356
NC_012633.1	Protein Homology	CDS	384560	385861	.	-	0	ID=cds-WP_010977037.1;Parent=gene-RAF_RS01990;Dbxref=GenBank:WP_010977037.1;Name=WP_010977037.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410085.1;locus_tag=RAF_RS01990;product=proton-conducting transporter membrane subunit;protein_id=WP_010977037.1;transl_table=11
NC_012633.1	RefSeq	gene	385858	386193	.	-	.	ID=gene-RAF_RS01995;Name=RAF_RS01995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01995;old_locus_tag=RAF_ORF0357
NC_012633.1	Protein Homology	CDS	385858	386193	.	-	0	ID=cds-WP_012719542.1;Parent=gene-RAF_RS01995;Dbxref=GenBank:WP_012719542.1;Name=WP_012719542.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945571.1;locus_tag=RAF_RS01995;product=Na+/H+ antiporter subunit C;protein_id=WP_012719542.1;transl_table=11
NC_012633.1	RefSeq	gene	386272	387024	.	-	.	ID=gene-RAF_RS02000;Name=virB9;gbkey=Gene;gene=virB9;gene_biotype=protein_coding;locus_tag=RAF_RS02000;old_locus_tag=RAF_ORF0358
NC_012633.1	Protein Homology	CDS	386272	387024	.	-	0	ID=cds-WP_010977039.1;Parent=gene-RAF_RS02000;Dbxref=GenBank:WP_010977039.1;Name=WP_010977039.1;gbkey=CDS;gene=virB9;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150596.1;locus_tag=RAF_RS02000;product=P-type conjugative transfer protein VirB9;protein_id=WP_010977039.1;transl_table=11
NC_012633.1	RefSeq	gene	387026	387724	.	-	.	ID=gene-RAF_RS02005;Name=RAF_RS02005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02005;old_locus_tag=RAF_ORF0359
NC_012633.1	Protein Homology	CDS	387026	387724	.	-	0	ID=cds-WP_012719543.1;Parent=gene-RAF_RS02005;Dbxref=GenBank:WP_012719543.1;Name=WP_012719543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443174.1;locus_tag=RAF_RS02005;product=virB8 family protein;protein_id=WP_012719543.1;transl_table=11
NC_012633.1	RefSeq	gene	388185	388364	.	+	.	ID=gene-RAF_RS02010;Name=RAF_RS02010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02010;old_locus_tag=RAF_ORF0360
NC_012633.1	Protein Homology	CDS	388185	388364	.	+	0	ID=cds-WP_010977041.1;Parent=gene-RAF_RS02010;Dbxref=GenBank:WP_010977041.1;Name=WP_010977041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010886258.1;locus_tag=RAF_RS02010;product=DUF2706 domain-containing protein;protein_id=WP_010977041.1;transl_table=11
NC_012633.1	RefSeq	gene	388414	389145	.	+	.	ID=gene-RAF_RS02015;Name=RAF_RS02015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02015;old_locus_tag=RAF_ORF0361
NC_012633.1	Protein Homology	CDS	388414	389145	.	+	0	ID=cds-WP_012719544.1;Parent=gene-RAF_RS02015;Dbxref=GenBank:WP_012719544.1;Name=WP_012719544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443176.1;locus_tag=RAF_RS02015;product=virB8 family protein;protein_id=WP_012719544.1;transl_table=11
NC_012633.1	RefSeq	gene	389132	389605	.	+	.	ID=gene-RAF_RS02020;Name=RAF_RS02020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02020;old_locus_tag=RAF_ORF0362
NC_012633.1	Protein Homology	CDS	389132	389605	.	+	0	ID=cds-WP_012719545.1;Parent=gene-RAF_RS02020;Dbxref=GenBank:WP_012719545.1;Name=WP_012719545.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996190.1;locus_tag=RAF_RS02020;product=TrbG/VirB9 family P-type conjugative transfer protein;protein_id=WP_012719545.1;transl_table=11
NC_012633.1	RefSeq	gene	389789	391237	.	+	.	ID=gene-RAF_RS02025;Name=RAF_RS02025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02025;old_locus_tag=RAF_ORF0363
NC_012633.1	Protein Homology	CDS	389789	391237	.	+	0	ID=cds-WP_012719546.1;Parent=gene-RAF_RS02025;Dbxref=GenBank:WP_012719546.1;Name=WP_012719546.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273331.1;locus_tag=RAF_RS02025;product=TrbI/VirB10 family protein;protein_id=WP_012719546.1;transl_table=11
NC_012633.1	RefSeq	gene	391234	392238	.	+	.	ID=gene-RAF_RS02030;Name=virB11;gbkey=Gene;gene=virB11;gene_biotype=protein_coding;locus_tag=RAF_RS02030;old_locus_tag=RAF_ORF0364
NC_012633.1	Protein Homology	CDS	391234	392238	.	+	0	ID=cds-WP_012719547.1;Parent=gene-RAF_RS02030;Dbxref=GenBank:WP_012719547.1;Name=WP_012719547.1;Ontology_term=GO:0044097,GO:0043684;gbkey=CDS;gene=virB11;go_component=type IV secretion system complex|0043684||IEA;go_process=secretion by the type IV secretion system|0044097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273332.1;locus_tag=RAF_RS02030;product=P-type DNA transfer ATPase VirB11;protein_id=WP_012719547.1;transl_table=11
NC_012633.1	RefSeq	gene	392393	394168	.	+	.	ID=gene-RAF_RS02035;Name=RAF_RS02035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02035;old_locus_tag=RAF_ORF0365
NC_012633.1	Protein Homology	CDS	392393	394168	.	+	0	ID=cds-WP_012719548.1;Parent=gene-RAF_RS02035;Dbxref=GenBank:WP_012719548.1;Name=WP_012719548.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443180.1;locus_tag=RAF_RS02035;product=type IV secretory system conjugative DNA transfer family protein;protein_id=WP_012719548.1;transl_table=11
NC_012633.1	RefSeq	gene	394170	395582	.	+	.	ID=gene-RAF_RS02040;Name=RAF_RS02040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02040;old_locus_tag=RAF_ORF0366
NC_012633.1	Protein Homology	CDS	394170	395582	.	+	0	ID=cds-WP_012719549.1;Parent=gene-RAF_RS02040;Dbxref=GenBank:WP_012719549.1;Name=WP_012719549.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014408412.1;locus_tag=RAF_RS02040;product=Ppx/GppA phosphatase family protein;protein_id=WP_012719549.1;transl_table=11
NC_012633.1	RefSeq	gene	395796	396197	.	-	.	ID=gene-RAF_RS02050;Name=RAF_RS02050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02050;old_locus_tag=RAF_ORF0367
NC_012633.1	Protein Homology	CDS	395796	396197	.	-	0	ID=cds-WP_012719550.1;Parent=gene-RAF_RS02050;Dbxref=GenBank:WP_012719550.1;Name=WP_012719550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273335.1;locus_tag=RAF_RS02050;product=hypothetical protein;protein_id=WP_012719550.1;transl_table=11
NC_012633.1	RefSeq	gene	396235	396525	.	-	.	ID=gene-RAF_RS02055;Name=RAF_RS02055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02055;old_locus_tag=RAF_ORF0368
NC_012633.1	Protein Homology	CDS	396235	396525	.	-	0	ID=cds-WP_012719551.1;Parent=gene-RAF_RS02055;Dbxref=GenBank:WP_012719551.1;Name=WP_012719551.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719551.1;locus_tag=RAF_RS02055;product=hypothetical protein;protein_id=WP_012719551.1;transl_table=11
NC_012633.1	RefSeq	gene	396984	397364	.	-	.	ID=gene-RAF_RS02060;Name=RAF_RS02060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02060;old_locus_tag=RAF_ORF0369
NC_012633.1	Protein Homology	CDS	396984	397364	.	-	0	ID=cds-WP_012719552.1;Parent=gene-RAF_RS02060;Dbxref=GenBank:WP_012719552.1;Name=WP_012719552.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770019.1;locus_tag=RAF_RS02060;product=hypothetical protein;protein_id=WP_012719552.1;transl_table=11
NC_012633.1	RefSeq	gene	397587	397871	.	+	.	ID=gene-RAF_RS02065;Name=RAF_RS02065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02065;old_locus_tag=RAF_ORF0370
NC_012633.1	Protein Homology	CDS	397587	397871	.	+	0	ID=cds-WP_012719553.1;Parent=gene-RAF_RS02065;Dbxref=GenBank:WP_012719553.1;Name=WP_012719553.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719553.1;locus_tag=RAF_RS02065;product=hypothetical protein;protein_id=WP_012719553.1;transl_table=11
NC_012633.1	RefSeq	gene	398147	398272	.	-	.	ID=gene-RAF_RS02070;Name=RAF_RS02070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02070;old_locus_tag=RAF_ORF0371
NC_012633.1	Protein Homology	CDS	398147	398272	.	-	0	ID=cds-WP_012719554.1;Parent=gene-RAF_RS02070;Dbxref=GenBank:WP_012719554.1;Name=WP_012719554.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410533.1;locus_tag=RAF_RS02070;product=hypothetical protein;protein_id=WP_012719554.1;transl_table=11
NC_012633.1	RefSeq	gene	398505	399392	.	+	.	ID=gene-RAF_RS02075;Name=RAF_RS02075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02075;old_locus_tag=RAF_ORF0372
NC_012633.1	Protein Homology	CDS	398505	399392	.	+	0	ID=cds-WP_012719555.1;Parent=gene-RAF_RS02075;Dbxref=GenBank:WP_012719555.1;Name=WP_012719555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190751.1;locus_tag=RAF_RS02075;product=DUF2608 domain-containing protein;protein_id=WP_012719555.1;transl_table=11
NC_012633.1	RefSeq	gene	399355	400200	.	+	.	ID=gene-RAF_RS02080;Name=RAF_RS02080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02080;old_locus_tag=RAF_ORF0373
NC_012633.1	Protein Homology	CDS	399355	400200	.	+	0	ID=cds-WP_010977053.1;Parent=gene-RAF_RS02080;Dbxref=GenBank:WP_010977053.1;Name=WP_010977053.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443108.1;locus_tag=RAF_RS02080;product=DUF2608 domain-containing protein;protein_id=WP_010977053.1;transl_table=11
NC_012633.1	RefSeq	gene	400203	400979	.	+	.	ID=gene-RAF_RS02085;Name=RAF_RS02085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02085;old_locus_tag=RAF_ORF0374
NC_012633.1	Protein Homology	CDS	400203	400979	.	+	0	ID=cds-WP_012719556.1;Parent=gene-RAF_RS02085;Dbxref=GenBank:WP_012719556.1;Name=WP_012719556.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977054.1;locus_tag=RAF_RS02085;product=3'(2')%2C5'-bisphosphate nucleotidase CysQ;protein_id=WP_012719556.1;transl_table=11
NC_012633.1	RefSeq	gene	401119	403779	.	-	.	ID=gene-RAF_RS02090;Name=mutS;gbkey=Gene;gene=mutS;gene_biotype=protein_coding;locus_tag=RAF_RS02090;old_locus_tag=RAF_ORF0375
NC_012633.1	Protein Homology	CDS	401119	403779	.	-	0	ID=cds-WP_041472006.1;Parent=gene-RAF_RS02090;Dbxref=GenBank:WP_041472006.1;Name=WP_041472006.1;Ontology_term=GO:0006298,GO:0005524,GO:0030983;gbkey=CDS;gene=mutS;go_function=ATP binding|0005524||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392048.1;locus_tag=RAF_RS02090;product=DNA mismatch repair protein MutS;protein_id=WP_041472006.1;transl_table=11
NC_012633.1	RefSeq	gene	403964	404398	.	-	.	ID=gene-RAF_RS02095;Name=rpiB;gbkey=Gene;gene=rpiB;gene_biotype=protein_coding;locus_tag=RAF_RS02095;old_locus_tag=RAF_ORF0376
NC_012633.1	Protein Homology	CDS	403964	404398	.	-	0	ID=cds-WP_012719558.1;Parent=gene-RAF_RS02095;Dbxref=GenBank:WP_012719558.1;Name=WP_012719558.1;Ontology_term=GO:0009052,GO:0004751;gbkey=CDS;gene=rpiB;go_function=ribose-5-phosphate isomerase activity|0004751||IEA;go_process=pentose-phosphate shunt%2C non-oxidative branch|0009052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011476971.1;locus_tag=RAF_RS02095;product=ribose 5-phosphate isomerase B;protein_id=WP_012719558.1;transl_table=11
NC_012633.1	RefSeq	gene	404450	405124	.	+	.	ID=gene-RAF_RS02100;Name=RAF_RS02100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02100;old_locus_tag=RAF_ORF0377
NC_012633.1	Protein Homology	CDS	404450	405124	.	+	0	ID=cds-WP_012719559.1;Parent=gene-RAF_RS02100;Dbxref=GenBank:WP_012719559.1;Name=WP_012719559.1;Ontology_term=GO:0006508,GO:0004222,GO:0016787,GO:0046872;gbkey=CDS;go_function=metalloendopeptidase activity|0004222||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443113.1;locus_tag=RAF_RS02100;product=murein hydrolase activator EnvC family protein;protein_id=WP_012719559.1;transl_table=11
NC_012633.1	RefSeq	gene	405125	405817	.	+	.	ID=gene-RAF_RS02105;Name=RAF_RS02105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02105;old_locus_tag=RAF_ORF0378
NC_012633.1	Protein Homology	CDS	405125	405817	.	+	0	ID=cds-WP_012719560.1;Parent=gene-RAF_RS02105;Dbxref=GenBank:WP_012719560.1;Name=WP_012719560.1;Ontology_term=GO:0006508,GO:0008233,GO:0008237,GO:0008270,GO:0016787,GO:0046872;gbkey=CDS;go_function=peptidase activity|0008233||IEA,metallopeptidase activity|0008237||IEA,zinc ion binding|0008270||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016916614.1;locus_tag=RAF_RS02105;product=M48 family metallopeptidase;protein_id=WP_012719560.1;transl_table=11
NC_012633.1	RefSeq	gene	405908	406792	.	+	.	ID=gene-RAF_RS02110;Name=thyX;gbkey=Gene;gene=thyX;gene_biotype=protein_coding;locus_tag=RAF_RS02110;old_locus_tag=RAF_ORF0379
NC_012633.1	Protein Homology	CDS	405908	406792	.	+	0	ID=cds-WP_012719561.1;Parent=gene-RAF_RS02110;Dbxref=GenBank:WP_012719561.1;Name=WP_012719561.1;Ontology_term=GO:0006231,GO:0050660,GO:0050797;gbkey=CDS;gene=thyX;go_function=flavin adenine dinucleotide binding|0050660||IEA,thymidylate synthase (FAD) activity|0050797||IEA;go_process=dTMP biosynthetic process|0006231||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443114.1;locus_tag=RAF_RS02110;product=FAD-dependent thymidylate synthase;protein_id=WP_012719561.1;transl_table=11
NC_012633.1	RefSeq	gene	406867	408201	.	+	.	ID=gene-RAF_RS02115;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=RAF_RS02115;old_locus_tag=RAF_ORF0380
NC_012633.1	Protein Homology	CDS	406867	408201	.	+	0	ID=cds-WP_012719562.1;Parent=gene-RAF_RS02115;Dbxref=GenBank:WP_012719562.1;Name=WP_012719562.1;Ontology_term=GO:0017038,GO:0005215,GO:0042597;gbkey=CDS;gene=tolB;go_component=periplasmic space|0042597||IEA;go_function=transporter activity|0005215||IEA;go_process=protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190757.1;locus_tag=RAF_RS02115;product=Tol-Pal system beta propeller repeat protein TolB;protein_id=WP_012719562.1;transl_table=11
NC_012633.1	RefSeq	gene	408340	409221	.	-	.	ID=gene-RAF_RS02120;Name=rpoH;gbkey=Gene;gene=rpoH;gene_biotype=protein_coding;locus_tag=RAF_RS02120;old_locus_tag=RAF_ORF0381
NC_012633.1	Protein Homology	CDS	408340	409221	.	-	0	ID=cds-WP_012719563.1;Parent=gene-RAF_RS02120;Dbxref=GenBank:WP_012719563.1;Name=WP_012719563.1;Ontology_term=GO:0006352,GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoH;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443116.1;locus_tag=RAF_RS02120;product=RNA polymerase sigma factor RpoH;protein_id=WP_012719563.1;transl_table=11
NC_012633.1	RefSeq	gene	409310	409876	.	+	.	ID=gene-RAF_RS02125;Name=RAF_RS02125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02125;old_locus_tag=RAF_ORF0382
NC_012633.1	Protein Homology	CDS	409310	409876	.	+	0	ID=cds-WP_004996151.1;Parent=gene-RAF_RS02125;Dbxref=GenBank:WP_004996151.1;Name=WP_004996151.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014014111.1;locus_tag=RAF_RS02125;product=cytochrome c oxidase assembly protein;protein_id=WP_004996151.1;transl_table=11
NC_012633.1	RefSeq	gene	409974	410954	.	-	.	ID=gene-RAF_RS02130;Name=RAF_RS02130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02130;old_locus_tag=RAF_ORF0383
NC_012633.1	Protein Homology	CDS	409974	410954	.	-	0	ID=cds-WP_004996150.1;Parent=gene-RAF_RS02130;Dbxref=GenBank:WP_004996150.1;Name=WP_004996150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926123.1;locus_tag=RAF_RS02130;product=hypothetical protein;protein_id=WP_004996150.1;transl_table=11
NC_012633.1	RefSeq	gene	410981	411145	.	+	.	ID=gene-RAF_RS09255;Name=RAF_RS09255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09255
NC_012633.1	GeneMarkS-2+	CDS	410981	411145	.	+	0	ID=cds-WP_200858180.1;Parent=gene-RAF_RS09255;Dbxref=GenBank:WP_200858180.1;Name=WP_200858180.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09255;product=hypothetical protein;protein_id=WP_200858180.1;transl_table=11
NC_012633.1	RefSeq	gene	411222	412319	.	+	.	ID=gene-RAF_RS02135;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;locus_tag=RAF_RS02135;old_locus_tag=RAF_ORF0384
NC_012633.1	Protein Homology	CDS	411222	412319	.	+	0	ID=cds-WP_012719564.1;Parent=gene-RAF_RS02135;Dbxref=GenBank:WP_012719564.1;Name=WP_012719564.1;Ontology_term=GO:0008033,GO:0016740,GO:0016783;gbkey=CDS;gene=mnmA;go_function=transferase activity|0016740||IEA,sulfurtransferase activity|0016783||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014014113.1;locus_tag=RAF_RS02135;product=tRNA 2-thiouridine(34) synthase MnmA;protein_id=WP_012719564.1;transl_table=11
NC_012633.1	RefSeq	gene	412450	413847	.	+	.	ID=gene-RAF_RS02140;Name=RAF_RS02140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02140;old_locus_tag=RAF_ORF0385
NC_012633.1	Protein Homology	CDS	412450	413847	.	+	0	ID=cds-WP_012719565.1;Parent=gene-RAF_RS02140;Dbxref=GenBank:WP_012719565.1;Name=WP_012719565.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270829.1;locus_tag=RAF_RS02140;product=amino acid permease;protein_id=WP_012719565.1;transl_table=11
NC_012633.1	RefSeq	gene	413997	415241	.	+	.	ID=gene-RAF_RS02145;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=RAF_RS02145;old_locus_tag=RAF_ORF0386
NC_012633.1	Protein Homology	CDS	413997	415241	.	+	0	ID=cds-WP_012719566.1;Parent=gene-RAF_RS02145;Dbxref=GenBank:WP_012719566.1;Name=WP_012719566.1;Ontology_term=GO:0006427,GO:0004821,GO:0005524,GO:0005737;gbkey=CDS;gene=hisS;go_component=cytoplasm|0005737||IEA;go_function=histidine-tRNA ligase activity|0004821||IEA,ATP binding|0005524||IEA;go_process=histidyl-tRNA aminoacylation|0006427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597402.1;locus_tag=RAF_RS02145;product=histidine--tRNA ligase;protein_id=WP_012719566.1;transl_table=11
NC_012633.1	RefSeq	gene	415674	415871	.	+	.	ID=gene-RAF_RS02150;Name=RAF_RS02150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02150;old_locus_tag=RAF_ORF0387
NC_012633.1	Protein Homology	CDS	415674	415871	.	+	0	ID=cds-WP_004996141.1;Parent=gene-RAF_RS02150;Dbxref=GenBank:WP_004996141.1;Name=WP_004996141.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926127.1;locus_tag=RAF_RS02150;product=ATP-binding cassette domain-containing protein;protein_id=WP_004996141.1;transl_table=11
NC_012633.1	RefSeq	gene	416552	416956	.	-	.	ID=gene-RAF_RS09260;Name=RAF_RS09260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09260;old_locus_tag=RAF_ORF0389
NC_012633.1	Protein Homology	CDS	416552	416956	.	-	0	ID=cds-WP_012719568.1;Parent=gene-RAF_RS09260;Dbxref=GenBank:WP_012719568.1;Name=WP_012719568.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719568.1;locus_tag=RAF_RS09260;product=hypothetical protein;protein_id=WP_012719568.1;transl_table=11
NC_012633.1	RefSeq	gene	417030	418034	.	-	.	ID=gene-RAF_RS02160;Name=RAF_RS02160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02160;old_locus_tag=RAF_ORF0390
NC_012633.1	Protein Homology	CDS	417030	418034	.	-	0	ID=cds-WP_012719569.1;Parent=gene-RAF_RS02160;Dbxref=GenBank:WP_012719569.1;Name=WP_012719569.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719569.1;locus_tag=RAF_RS02160;product=tetratricopeptide repeat protein;protein_id=WP_012719569.1;transl_table=11
NC_012633.1	RefSeq	gene	418223	418345	.	-	.	ID=gene-RAF_RS10295;Name=RAF_RS10295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10295
NC_012633.1	GeneMarkS-2+	CDS	418223	418345	.	-	0	ID=cds-WP_268738933.1;Parent=gene-RAF_RS10295;Dbxref=GenBank:WP_268738933.1;Name=WP_268738933.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10295;product=hypothetical protein;protein_id=WP_268738933.1;transl_table=11
NC_012633.1	RefSeq	gene	418495	418923	.	-	.	ID=gene-RAF_RS09715;Name=RAF_RS09715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09715;old_locus_tag=RAF_ORF0391
NC_012633.1	Protein Homology	CDS	418495	418923	.	-	0	ID=cds-WP_012719570.1;Parent=gene-RAF_RS09715;Dbxref=GenBank:WP_012719570.1;Name=WP_012719570.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719570.1;locus_tag=RAF_RS09715;product=hypothetical protein;protein_id=WP_012719570.1;transl_table=11
NC_012633.1	RefSeq	gene	419425	420150	.	+	.	ID=gene-RAF_RS02175;Name=tolQ;gbkey=Gene;gene=tolQ;gene_biotype=protein_coding;locus_tag=RAF_RS02175;old_locus_tag=RAF_ORF0392
NC_012633.1	Protein Homology	CDS	419425	420150	.	+	0	ID=cds-WP_004996137.1;Parent=gene-RAF_RS02175;Dbxref=GenBank:WP_004996137.1;Name=WP_004996137.1;Ontology_term=GO:0043213,GO:0016020;gbkey=CDS;gene=tolQ;go_component=membrane|0016020||IEA;go_process=bacteriocin transport|0043213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443126.1;locus_tag=RAF_RS02175;product=protein TolQ;protein_id=WP_004996137.1;transl_table=11
NC_012633.1	RefSeq	gene	420150	420581	.	+	.	ID=gene-RAF_RS02180;Name=tolR;gbkey=Gene;gene=tolR;gene_biotype=protein_coding;locus_tag=RAF_RS02180;old_locus_tag=RAF_ORF0393
NC_012633.1	Protein Homology	CDS	420150	420581	.	+	0	ID=cds-WP_012719571.1;Parent=gene-RAF_RS02180;Dbxref=GenBank:WP_012719571.1;Name=WP_012719571.1;Ontology_term=GO:0061024,GO:1902600,GO:0015078,GO:0098567;gbkey=CDS;gene=tolR;go_component=periplasmic side of plasma membrane|0098567||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=membrane organization|0061024||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996134.1;locus_tag=RAF_RS02180;product=protein TolR;protein_id=WP_012719571.1;transl_table=11
NC_012633.1	RefSeq	gene	420571	421542	.	+	.	ID=gene-RAF_RS02185;Name=RAF_RS02185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02185;old_locus_tag=RAF_ORF0394
NC_012633.1	Protein Homology	CDS	420571	421542	.	+	0	ID=cds-WP_012719572.1;Parent=gene-RAF_RS02185;Dbxref=GenBank:WP_012719572.1;Name=WP_012719572.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150630.1;locus_tag=RAF_RS02185;product=energy transducer TonB;protein_id=WP_012719572.1;transl_table=11
NC_012633.1	RefSeq	gene	421741	421926	.	-	.	ID=gene-RAF_RS10525;Name=RAF_RS10525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10525
NC_012633.1	Protein Homology	CDS	421741	421926	.	-	0	ID=cds-WP_083762093.1;Parent=gene-RAF_RS10525;Dbxref=GenBank:WP_083762093.1;Name=WP_083762093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014014126.1;locus_tag=RAF_RS10525;product=hypothetical protein;protein_id=WP_083762093.1;transl_table=11
NC_012633.1	RefSeq	gene	422516	423223	.	+	.	ID=gene-RAF_RS02190;Name=RAF_RS02190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02190;old_locus_tag=RAF_ORF0395
NC_012633.1	Protein Homology	CDS	422516	423223	.	+	0	ID=cds-WP_012719573.1;Parent=gene-RAF_RS02190;Dbxref=GenBank:WP_012719573.1;Name=WP_012719573.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190766.1;locus_tag=RAF_RS02190;product=HD domain-containing protein;protein_id=WP_012719573.1;transl_table=11
NC_012633.1	RefSeq	gene	423174	424490	.	-	.	ID=gene-RAF_RS02195;Name=RAF_RS02195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02195;old_locus_tag=RAF_ORF0396
NC_012633.1	Protein Homology	CDS	423174	424490	.	-	0	ID=cds-WP_012719574.1;Parent=gene-RAF_RS02195;Dbxref=GenBank:WP_012719574.1;Name=WP_012719574.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443130.1;locus_tag=RAF_RS02195;product=MFS transporter;protein_id=WP_012719574.1;transl_table=11
NC_012633.1	RefSeq	gene	424629	426164	.	-	.	ID=gene-RAF_RS02200;Name=RAF_RS02200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02200;old_locus_tag=RAF_ORF0397
NC_012633.1	Protein Homology	CDS	424629	426164	.	-	0	ID=cds-WP_012719575.1;Parent=gene-RAF_RS02200;Dbxref=GenBank:WP_012719575.1;Name=WP_012719575.1;Ontology_term=GO:0015031,GO:0030253,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,protein secretion by the type I secretion system|0030253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926135.1;locus_tag=RAF_RS02200;product=HlyD family type I secretion periplasmic adaptor subunit;protein_id=WP_012719575.1;transl_table=11
NC_012633.1	RefSeq	gene	426349	428103	.	-	.	ID=gene-RAF_RS02205;Name=RAF_RS02205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02205;old_locus_tag=RAF_ORF0398
NC_012633.1	Protein Homology	CDS	426349	428103	.	-	0	ID=cds-WP_012719576.1;Parent=gene-RAF_RS02205;Dbxref=GenBank:WP_012719576.1;Name=WP_012719576.1;Ontology_term=GO:0030253,GO:0005524,GO:0016020,GO:0030256;gbkey=CDS;go_component=membrane|0016020||IEA,type I protein secretion system complex|0030256||IEA;go_function=ATP binding|0005524||IEA;go_process=protein secretion by the type I secretion system|0030253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410556.1;locus_tag=RAF_RS02205;product=type I secretion system permease/ATPase;protein_id=WP_012719576.1;transl_table=11
NC_012633.1	RefSeq	gene	428114	429130	.	-	.	ID=gene-RAF_RS02210;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=RAF_RS02210;old_locus_tag=RAF_ORF0399
NC_012633.1	Protein Homology	CDS	428114	429130	.	-	0	ID=cds-WP_012719577.1;Parent=gene-RAF_RS02210;Dbxref=GenBank:WP_012719577.1;Name=WP_012719577.1;Ontology_term=GO:0009086,GO:0009088,GO:0009089,GO:0009097,GO:0004073,GO:0050661;gbkey=CDS;gene=asd;go_function=aspartate-semialdehyde dehydrogenase activity|0004073||IEA,NADP binding|0050661||IEA;go_process=methionine biosynthetic process|0009086||IEA,threonine biosynthetic process|0009088||IEA,lysine biosynthetic process via diaminopimelate|0009089||IEA,isoleucine biosynthetic process|0009097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443133.1;locus_tag=RAF_RS02210;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_012719577.1;transl_table=11
NC_012633.1	RefSeq	gene	429123	429482	.	-	.	ID=gene-RAF_RS02215;Name=RAF_RS02215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02215;old_locus_tag=RAF_ORF0400
NC_012633.1	Protein Homology	CDS	429123	429482	.	-	0	ID=cds-WP_012150637.1;Parent=gene-RAF_RS02215;Dbxref=GenBank:WP_012150637.1;Name=WP_012150637.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830705.1;locus_tag=RAF_RS02215;product=HIT domain-containing protein;protein_id=WP_012150637.1;transl_table=11
NC_012633.1	RefSeq	gene	429673	430026	.	-	.	ID=gene-RAF_RS02220;Name=RAF_RS02220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02220;old_locus_tag=RAF_ORF0401
NC_012633.1	Protein Homology	CDS	429673	430026	.	-	0	ID=cds-WP_012719578.1;Parent=gene-RAF_RS02220;Dbxref=GenBank:WP_012719578.1;Name=WP_012719578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945591.1;locus_tag=RAF_RS02220;product=DUF2628 domain-containing protein;protein_id=WP_012719578.1;transl_table=11
NC_012633.1	RefSeq	gene	430107	430208	.	-	.	ID=gene-RAF_RS07565;Name=RAF_RS07565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07565
NC_012633.1	Protein Homology	CDS	430107	430208	.	-	0	ID=cds-WP_014410558.1;Parent=gene-RAF_RS07565;Dbxref=GenBank:WP_014410558.1;Name=WP_014410558.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012262316.1;locus_tag=RAF_RS07565;product=palindromic element RPE5 domain-containing protein;protein_id=WP_014410558.1;transl_table=11
NC_012633.1	RefSeq	gene	430290	430838	.	+	.	ID=gene-RAF_RS02225;Name=hslV;gbkey=Gene;gene=hslV;gene_biotype=protein_coding;locus_tag=RAF_RS02225;old_locus_tag=RAF_ORF0402
NC_012633.1	Protein Homology	CDS	430290	430838	.	+	0	ID=cds-WP_004996101.1;Parent=gene-RAF_RS02225;Dbxref=GenBank:WP_004996101.1;Name=WP_004996101.1;Ontology_term=GO:0051603,GO:0004298,GO:0009376;gbkey=CDS;gene=hslV;go_component=HslUV protease complex|0009376||IEA;go_function=threonine-type endopeptidase activity|0004298||IEA;go_process=proteolysis involved in protein catabolic process|0051603||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443137.1;locus_tag=RAF_RS02225;product=ATP-dependent protease subunit HslV;protein_id=WP_004996101.1;transl_table=11
NC_012633.1	RefSeq	gene	430835	432187	.	+	.	ID=gene-RAF_RS02230;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=RAF_RS02230;old_locus_tag=RAF_ORF0403
NC_012633.1	Protein Homology	CDS	430835	432187	.	+	0	ID=cds-WP_012719579.1;Parent=gene-RAF_RS02230;Dbxref=GenBank:WP_012719579.1;Name=WP_012719579.1;Ontology_term=GO:0005524,GO:0008233,GO:0016887,GO:0009376;gbkey=CDS;gene=hslU;go_component=HslUV protease complex|0009376||IEA;go_function=ATP binding|0005524||IEA,peptidase activity|0008233||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190774.1;locus_tag=RAF_RS02230;product=ATP-dependent protease ATPase subunit HslU;protein_id=WP_012719579.1;transl_table=11
NC_012633.1	RefSeq	gene	432450	432920	.	+	.	ID=gene-RAF_RS02235;Name=RAF_RS02235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02235
NC_012633.1	Protein Homology	CDS	432450	432920	.	+	0	ID=cds-WP_234943922.1;Parent=gene-RAF_RS02235;Dbxref=GenBank:WP_234943922.1;Name=WP_234943922.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024931.5;locus_tag=RAF_RS02235;product=magnesium chelatase domain-containing protein;protein_id=WP_234943922.1;transl_table=11
NC_012633.1	RefSeq	gene	432920	433141	.	+	.	ID=gene-RAF_RS10300;Name=RAF_RS10300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10300
NC_012633.1	Protein Homology	CDS	432920	433141	.	+	0	ID=cds-WP_041471831.1;Parent=gene-RAF_RS10300;Dbxref=GenBank:WP_041471831.1;Name=WP_041471831.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362322.1;locus_tag=RAF_RS10300;product=ATP-binding protein;protein_id=WP_041471831.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	433111	433869	.	+	.	ID=gene-RAF_RS10530;Name=RAF_RS10530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10530;pseudo=true
NC_012633.1	Protein Homology	CDS	433111	433869	.	+	0	ID=cds-RAF_RS10530;Parent=gene-RAF_RS10530;Note=internal stop;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: protein motif:HMM:NF013260.5;locus_tag=RAF_RS10530;product=ATP-binding protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	433979	434119	.	+	.	ID=gene-RAF_RS09265;Name=RAF_RS09265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09265
NC_012633.1	Protein Homology	CDS	433979	434119	.	+	0	ID=cds-WP_014273363.1;Parent=gene-RAF_RS09265;Dbxref=GenBank:WP_014273363.1;Name=WP_014273363.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273363.1;locus_tag=RAF_RS09265;product=hypothetical protein;protein_id=WP_014273363.1;transl_table=11
NC_012633.1	RefSeq	gene	434176	434361	.	+	.	ID=gene-RAF_RS02250;Name=RAF_RS02250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02250
NC_012633.1	Protein Homology	CDS	434176	434361	.	+	0	ID=cds-WP_041471833.1;Parent=gene-RAF_RS02250;Dbxref=GenBank:WP_041471833.1;Name=WP_041471833.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443141.1;locus_tag=RAF_RS02250;product=hypothetical protein;protein_id=WP_041471833.1;transl_table=11
NC_012633.1	RefSeq	gene	434337	434915	.	+	.	ID=gene-RAF_RS02255;Name=RAF_RS02255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02255;old_locus_tag=RAF_ORF0407
NC_012633.1	Protein Homology	CDS	434337	434915	.	+	0	ID=cds-WP_012719580.1;Parent=gene-RAF_RS02255;Dbxref=GenBank:WP_012719580.1;Name=WP_012719580.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977086.1;locus_tag=RAF_RS02255;product=hypothetical protein;protein_id=WP_012719580.1;transl_table=11
NC_012633.1	RefSeq	gene	434925	436265	.	+	.	ID=gene-RAF_RS02260;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=RAF_RS02260;old_locus_tag=RAF_ORF0408
NC_012633.1	Protein Homology	CDS	434925	436265	.	+	0	ID=cds-WP_012719581.1;Parent=gene-RAF_RS02260;Dbxref=GenBank:WP_012719581.1;Name=WP_012719581.1;Ontology_term=GO:0009245,GO:0008915;gbkey=CDS;gene=lpxB;go_function=lipid-A-disaccharide synthase activity|0008915||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150643.1;locus_tag=RAF_RS02260;product=lipid-A-disaccharide synthase;protein_id=WP_012719581.1;transl_table=11
NC_012633.1	RefSeq	gene	436262	436534	.	-	.	ID=gene-RAF_RS02265;Name=RAF_RS02265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02265;old_locus_tag=RAF_ORF0409
NC_012633.1	Protein Homology	CDS	436262	436534	.	-	0	ID=cds-WP_004996088.1;Parent=gene-RAF_RS02265;Dbxref=GenBank:WP_004996088.1;Name=WP_004996088.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945596.1;locus_tag=RAF_RS02265;product=hypothetical protein;protein_id=WP_004996088.1;transl_table=11
NC_012633.1	RefSeq	gene	436881	437900	.	+	.	ID=gene-RAF_RS02270;Name=mltG;gbkey=Gene;gene=mltG;gene_biotype=protein_coding;locus_tag=RAF_RS02270;old_locus_tag=RAF_ORF0410
NC_012633.1	Protein Homology	CDS	436881	437900	.	+	0	ID=cds-WP_010977088.1;Parent=gene-RAF_RS02270;Dbxref=GenBank:WP_010977088.1;Name=WP_010977088.1;Ontology_term=GO:0009252,GO:0071555,GO:0008932;gbkey=CDS;gene=mltG;go_function=lytic endotransglycosylase activity|0008932||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410563.1;locus_tag=RAF_RS02270;product=endolytic transglycosylase MltG;protein_id=WP_010977088.1;transl_table=11
NC_012633.1	RefSeq	gene	438040	438351	.	+	.	ID=gene-RAF_RS02275;Name=cyaY;gbkey=Gene;gene=cyaY;gene_biotype=protein_coding;locus_tag=RAF_RS02275;old_locus_tag=RAF_ORF0411
NC_012633.1	Protein Homology	CDS	438040	438351	.	+	0	ID=cds-WP_010977089.1;Parent=gene-RAF_RS02275;Dbxref=GenBank:WP_010977089.1;Name=WP_010977089.1;Ontology_term=GO:0016226,GO:0005506;gbkey=CDS;gene=cyaY;go_function=iron ion binding|0005506||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996083.1;locus_tag=RAF_RS02275;product=iron donor protein CyaY;protein_id=WP_010977089.1;transl_table=11
NC_012633.1	RefSeq	gene	438489	439058	.	+	.	ID=gene-RAF_RS07585;Name=RAF_RS07585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07585;old_locus_tag=RAF_ORF0412
NC_012633.1	Protein Homology	CDS	438489	439058	.	+	0	ID=cds-WP_012719582.1;Parent=gene-RAF_RS07585;Dbxref=GenBank:WP_012719582.1;Name=WP_012719582.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410565.1;locus_tag=RAF_RS07585;product=DUF2608 domain-containing protein;protein_id=WP_012719582.1;transl_table=11
NC_012633.1	RefSeq	gene	439046	439159	.	+	.	ID=gene-RAF_RS10310;Name=RAF_RS10310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10310
NC_012633.1	Protein Homology	CDS	439046	439159	.	+	0	ID=cds-WP_230453593.1;Parent=gene-RAF_RS10310;Dbxref=GenBank:WP_230453593.1;Name=WP_230453593.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022472.5;locus_tag=RAF_RS10310;product=hypothetical protein;protein_id=WP_230453593.1;transl_table=11
NC_012633.1	RefSeq	gene	440123	440674	.	+	.	ID=gene-RAF_RS02285;Name=RAF_RS02285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02285;old_locus_tag=RAF_ORF0414
NC_012633.1	Protein Homology	CDS	440123	440674	.	+	0	ID=cds-WP_012719584.1;Parent=gene-RAF_RS02285;Dbxref=GenBank:WP_012719584.1;Name=WP_012719584.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719584.1;locus_tag=RAF_RS02285;product=peptidase;protein_id=WP_012719584.1;transl_table=11
NC_012633.1	RefSeq	gene	441259	441453	.	+	.	ID=gene-RAF_RS02290;Name=RAF_RS02290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02290;old_locus_tag=RAF_ORF0415
NC_012633.1	Protein Homology	CDS	441259	441453	.	+	0	ID=cds-WP_041472009.1;Parent=gene-RAF_RS02290;Dbxref=GenBank:WP_041472009.1;Name=WP_041472009.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150649.1;locus_tag=RAF_RS02290;product=hypothetical protein;protein_id=WP_041472009.1;transl_table=11
NC_012633.1	RefSeq	gene	441496	441624	.	+	.	ID=gene-RAF_RS10315;Name=RAF_RS10315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10315
NC_012633.1	Protein Homology	CDS	441496	441624	.	+	0	ID=cds-WP_268738934.1;Parent=gene-RAF_RS10315;Dbxref=GenBank:WP_268738934.1;Name=WP_268738934.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410569.1;locus_tag=RAF_RS10315;product=hypothetical protein;protein_id=WP_268738934.1;transl_table=11
NC_012633.1	RefSeq	gene	441811	443154	.	-	.	ID=gene-RAF_RS02295;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=RAF_RS02295;old_locus_tag=RAF_ORF0416
NC_012633.1	Protein Homology	CDS	441811	443154	.	-	0	ID=cds-WP_012719586.1;Parent=gene-RAF_RS02295;Dbxref=GenBank:WP_012719586.1;Name=WP_012719586.1;Ontology_term=GO:0006424,GO:0000166,GO:0004818,GO:0005524;gbkey=CDS;gene=gltX;go_function=nucleotide binding|0000166||IEA,glutamate-tRNA ligase activity|0004818||IEA,ATP binding|0005524||IEA;go_process=glutamyl-tRNA aminoacylation|0006424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443148.1;locus_tag=RAF_RS02295;product=glutamate--tRNA ligase;protein_id=WP_012719586.1;transl_table=11
NC_012633.1	RefSeq	gene	443263	445593	.	-	.	ID=gene-RAF_RS02300;Name=topA;gbkey=Gene;gene=topA;gene_biotype=protein_coding;locus_tag=RAF_RS02300;old_locus_tag=RAF_ORF0417
NC_012633.1	Protein Homology	CDS	443263	445593	.	-	0	ID=cds-WP_012719587.1;Parent=gene-RAF_RS02300;Dbxref=GenBank:WP_012719587.1;Name=WP_012719587.1;Ontology_term=GO:0006260,GO:0006265,GO:0003677,GO:0003917,GO:0005737;gbkey=CDS;gene=topA;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type I (single strand cut%2C ATP-independent) activity|0003917||IEA;go_process=DNA replication|0006260||IEA,DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443149.1;locus_tag=RAF_RS02300;product=type I DNA topoisomerase;protein_id=WP_012719587.1;transl_table=11
NC_012633.1	RefSeq	gene	445622	446131	.	-	.	ID=gene-RAF_RS10705;Name=RAF_RS10705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10705;old_locus_tag=RAF_ORF0418
NC_012633.1	Protein Homology	CDS	445622	446131	.	-	0	ID=cds-WP_083762094.1;Parent=gene-RAF_RS10705;Dbxref=GenBank:WP_083762094.1;Name=WP_083762094.1;Ontology_term=GO:0009294;gbkey=CDS;go_process=DNA-mediated transformation|0009294||IEA;inference=COORDINATES: protein motif:HMM:NF014533.5;locus_tag=RAF_RS10705;product=DNA-processing protein DprA;protein_id=WP_083762094.1;transl_table=11
NC_012633.1	RefSeq	gene	446139	446387	.	-	.	ID=gene-RAF_RS10325;Name=RAF_RS10325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10325
NC_012633.1	Protein Homology	CDS	446139	446387	.	-	0	ID=cds-WP_014410573.1;Parent=gene-RAF_RS10325;Dbxref=GenBank:WP_014410573.1;Name=WP_014410573.1;Ontology_term=GO:0009294;gbkey=CDS;go_process=DNA-mediated transformation|0009294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364596.1;locus_tag=RAF_RS10325;product=DNA-processing protein DprA;protein_id=WP_014410573.1;transl_table=11
NC_012633.1	RefSeq	gene	446432	446665	.	-	.	ID=gene-RAF_RS10545;Name=RAF_RS10545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10545
NC_012633.1	Protein Homology	CDS	446432	446665	.	-	0	ID=cds-WP_327203438.1;Parent=gene-RAF_RS10545;Dbxref=GenBank:WP_327203438.1;Name=WP_327203438.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF045295.2;locus_tag=RAF_RS10545;product=DNA processing protein DprA;protein_id=WP_327203438.1;transl_table=11
NC_012633.1	RefSeq	gene	446994	447596	.	-	.	ID=gene-RAF_RS02315;Name=RAF_RS02315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02315;old_locus_tag=RAF_ORF0420
NC_012633.1	Protein Homology	CDS	446994	447596	.	-	0	ID=cds-WP_012150652.1;Parent=gene-RAF_RS02315;Dbxref=GenBank:WP_012150652.1;Name=WP_012150652.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410575.1;locus_tag=RAF_RS02315;product=peroxiredoxin;protein_id=WP_012150652.1;transl_table=11
NC_012633.1	RefSeq	gene	447678	448616	.	-	.	ID=gene-RAF_RS02320;Name=RAF_RS02320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02320;old_locus_tag=RAF_ORF0421
NC_012633.1	Protein Homology	CDS	447678	448616	.	-	0	ID=cds-WP_004996064.1;Parent=gene-RAF_RS02320;Dbxref=GenBank:WP_004996064.1;Name=WP_004996064.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996064.1;locus_tag=RAF_RS02320;product=SPFH domain-containing protein;protein_id=WP_004996064.1;transl_table=11
NC_012633.1	RefSeq	gene	448690	448914	.	-	.	ID=gene-RAF_RS02325;Name=RAF_RS02325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02325
NC_012633.1	Protein Homology	CDS	448690	448914	.	-	0	ID=cds-WP_041471835.1;Parent=gene-RAF_RS02325;Dbxref=GenBank:WP_041471835.1;Name=WP_041471835.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996061.1;locus_tag=RAF_RS02325;product=hypothetical protein;protein_id=WP_041471835.1;transl_table=11
NC_012633.1	RefSeq	gene	448981	450549	.	-	.	ID=gene-RAF_RS02330;Name=RAF_RS02330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02330;old_locus_tag=RAF_ORF0422
NC_012633.1	Protein Homology	CDS	448981	450549	.	-	0	ID=cds-WP_012719588.1;Parent=gene-RAF_RS02330;Dbxref=GenBank:WP_012719588.1;Name=WP_012719588.1;Ontology_term=GO:0009244,GO:1900727,GO:0008484,GO:0016776,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=sulfuric ester hydrolase activity|0008484||IEA,phosphotransferase activity%2C phosphate group as acceptor|0016776||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA,osmoregulated periplasmic glucan biosynthetic process|1900727||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443153.1;locus_tag=RAF_RS02330;product=phosphoethanolamine transferase;protein_id=WP_012719588.1;transl_table=11
NC_012633.1	RefSeq	gene	450585	451049	.	+	.	ID=gene-RAF_RS02335;Name=ruvX;gbkey=Gene;gene=ruvX;gene_biotype=protein_coding;locus_tag=RAF_RS02335;old_locus_tag=RAF_ORF0423
NC_012633.1	Protein Homology	CDS	450585	451049	.	+	0	ID=cds-WP_012719589.1;Parent=gene-RAF_RS02335;Dbxref=GenBank:WP_012719589.1;Name=WP_012719589.1;Ontology_term=GO:0006364;gbkey=CDS;gene=ruvX;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012149427.1;locus_tag=RAF_RS02335;product=Holliday junction resolvase RuvX;protein_id=WP_012719589.1;transl_table=11
NC_012633.1	RefSeq	gene	451316	451477	.	+	.	ID=gene-RAF_RS09725;Name=RAF_RS09725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09725;old_locus_tag=RAF_ORF0424
NC_012633.1	Protein Homology	CDS	451316	451477	.	+	0	ID=cds-WP_041472010.1;Parent=gene-RAF_RS09725;Dbxref=GenBank:WP_041472010.1;Name=WP_041472010.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364600.1;locus_tag=RAF_RS09725;product=transcriptional regulator;protein_id=WP_041472010.1;transl_table=11
NC_012633.1	RefSeq	gene	451461	451550	.	+	.	ID=gene-RAF_RS09730;Name=RAF_RS09730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09730
NC_012633.1	Protein Homology	CDS	451461	451550	.	+	0	ID=cds-WP_012150658.1;Parent=gene-RAF_RS09730;Dbxref=GenBank:WP_012150658.1;Name=WP_012150658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150658.1;locus_tag=RAF_RS09730;product=hypothetical protein;protein_id=WP_012150658.1;transl_table=11
NC_012633.1	RefSeq	gene	451648	452502	.	+	.	ID=gene-RAF_RS02350;Name=RAF_RS02350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02350;old_locus_tag=RAF_ORF0425
NC_012633.1	Protein Homology	CDS	451648	452502	.	+	0	ID=cds-WP_012719591.1;Parent=gene-RAF_RS02350;Dbxref=GenBank:WP_012719591.1;Name=WP_012719591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443156.1;locus_tag=RAF_RS02350;product=dTDP-4-dehydrorhamnose reductase family protein;protein_id=WP_012719591.1;transl_table=11
NC_012633.1	RefSeq	gene	452685	453710	.	+	.	ID=gene-RAF_RS02355;Name=capD;gbkey=Gene;gene=capD;gene_biotype=protein_coding;locus_tag=RAF_RS02355;old_locus_tag=RAF_ORF0426
NC_012633.1	Protein Homology	CDS	452685	453710	.	+	0	ID=cds-WP_012719592.1;Parent=gene-RAF_RS02355;Dbxref=GenBank:WP_012719592.1;Name=WP_012719592.1;gbkey=CDS;gene=capD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270871.1;locus_tag=RAF_RS02355;product=UDP-glucose 4-epimerase;protein_id=WP_012719592.1;transl_table=11
NC_012633.1	RefSeq	gene	453703	454836	.	+	.	ID=gene-RAF_RS02360;Name=wecB;gbkey=Gene;gene=wecB;gene_biotype=protein_coding;locus_tag=RAF_RS02360;old_locus_tag=RAF_ORF0427
NC_012633.1	Protein Homology	CDS	453703	454836	.	+	0	ID=cds-WP_012719593.1;Parent=gene-RAF_RS02360;Dbxref=GenBank:WP_012719593.1;Name=WP_012719593.1;Ontology_term=GO:0008761;gbkey=CDS;gene=wecB;go_function=UDP-N-acetylglucosamine 2-epimerase activity|0008761||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004996052.1;locus_tag=RAF_RS02360;product=non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase;protein_id=WP_012719593.1;transl_table=11
NC_012633.1	RefSeq	gene	454796	456142	.	+	.	ID=gene-RAF_RS02365;Name=RAF_RS02365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02365;old_locus_tag=RAF_ORF0428
NC_012633.1	Protein Homology	CDS	454796	456142	.	+	0	ID=cds-WP_012719594.1;Parent=gene-RAF_RS02365;Dbxref=GenBank:WP_012719594.1;Name=WP_012719594.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770047.1;locus_tag=RAF_RS02365;product=hypothetical protein;protein_id=WP_012719594.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	456158	456644	.	+	.	ID=gene-RAF_RS08560;Name=RAF_RS08560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS08560;pseudo=true
NC_012633.1	Protein Homology	CDS	456158	456644	.	+	0	ID=cds-RAF_RS08560;Parent=gene-RAF_RS08560;Note=frameshifted%3B internal stop;Ontology_term=GO:0032259,GO:0008168,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012737022.1;locus_tag=RAF_RS08560;product=class I SAM-dependent methyltransferase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	457080	458894	.	+	.	ID=gene-RAF_RS02375;Name=RAF_RS02375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02375;old_locus_tag=RAF_ORF0430
NC_012633.1	Protein Homology	CDS	457080	458894	.	+	0	ID=cds-WP_012719596.1;Parent=gene-RAF_RS02375;Dbxref=GenBank:WP_012719596.1;Name=WP_012719596.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443161.1;locus_tag=RAF_RS02375;product=glycosyltransferase family 2 protein;protein_id=WP_012719596.1;transl_table=11
NC_012633.1	RefSeq	gene	458899	459897	.	-	.	ID=gene-RAF_RS02380;Name=RAF_RS02380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02380;old_locus_tag=RAF_ORF0431
NC_012633.1	Protein Homology	CDS	458899	459897	.	-	0	ID=cds-WP_012719597.1;Parent=gene-RAF_RS02380;Dbxref=GenBank:WP_012719597.1;Name=WP_012719597.1;Ontology_term=GO:0055085,GO:0022857,GO:0042802,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA,identical protein binding|0042802||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014363048.1;locus_tag=RAF_RS02380;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_012719597.1;transl_table=11
NC_012633.1	RefSeq	gene	459984	460778	.	-	.	ID=gene-RAF_RS02385;Name=RAF_RS02385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02385;old_locus_tag=RAF_ORF0432
NC_012633.1	Protein Homology	CDS	459984	460778	.	-	0	ID=cds-WP_012719598.1;Parent=gene-RAF_RS02385;Dbxref=GenBank:WP_012719598.1;Name=WP_012719598.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443163.1;locus_tag=RAF_RS02385;product=DUF2608 domain-containing protein;protein_id=WP_012719598.1;transl_table=11
NC_012633.1	RefSeq	gene	460788	461555	.	-	.	ID=gene-RAF_RS02390;Name=RAF_RS02390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02390;old_locus_tag=RAF_ORF0433
NC_012633.1	Protein Homology	CDS	460788	461555	.	-	0	ID=cds-WP_012719599.1;Parent=gene-RAF_RS02390;Dbxref=GenBank:WP_012719599.1;Name=WP_012719599.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410155.1;locus_tag=RAF_RS02390;product=alpha/beta hydrolase;protein_id=WP_012719599.1;transl_table=11
NC_012633.1	RefSeq	gene	461588	462760	.	+	.	ID=gene-RAF_RS02395;Name=RAF_RS02395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02395;old_locus_tag=RAF_ORF0434
NC_012633.1	Protein Homology	CDS	461588	462760	.	+	0	ID=cds-WP_012719600.1;Parent=gene-RAF_RS02395;Dbxref=GenBank:WP_012719600.1;Name=WP_012719600.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014363046.1;locus_tag=RAF_RS02395;product=glycosyltransferase family 4 protein;protein_id=WP_012719600.1;transl_table=11
NC_012633.1	RefSeq	gene	465262	465879	.	-	.	ID=gene-RAF_RS02405;Name=rpsD;gbkey=Gene;gene=rpsD;gene_biotype=protein_coding;locus_tag=RAF_RS02405;old_locus_tag=RAF_ORF0435
NC_012633.1	Protein Homology	CDS	465262	465879	.	-	0	ID=cds-WP_010977111.1;Parent=gene-RAF_RS02405;Dbxref=GenBank:WP_010977111.1;Name=WP_010977111.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsD;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190799.1;locus_tag=RAF_RS02405;product=30S ribosomal protein S4;protein_id=WP_010977111.1;transl_table=11
NC_012633.1	RefSeq	gene	466004	466921	.	+	.	ID=gene-RAF_RS02410;Name=cyoE;gbkey=Gene;gene=cyoE;gene_biotype=protein_coding;locus_tag=RAF_RS02410;old_locus_tag=RAF_ORF0436
NC_012633.1	Protein Homology	CDS	466004	466921	.	+	0	ID=cds-WP_010977112.1;Parent=gene-RAF_RS02410;Dbxref=GenBank:WP_010977112.1;Name=WP_010977112.1;Ontology_term=GO:0006783,GO:0008495,GO:0016020;gbkey=CDS;gene=cyoE;go_component=membrane|0016020||IEA;go_function=protoheme IX farnesyltransferase activity|0008495||IEA;go_process=heme biosynthetic process|0006783||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014120700.1;locus_tag=RAF_RS02410;product=heme o synthase;protein_id=WP_010977112.1;transl_table=11
NC_012633.1	RefSeq	gene	467327	467956	.	-	.	ID=gene-RAF_RS02415;Name=RAF_RS02415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02415;old_locus_tag=RAF_ORF0437
NC_012633.1	Protein Homology	CDS	467327	467956	.	-	0	ID=cds-WP_012719601.1;Parent=gene-RAF_RS02415;Dbxref=GenBank:WP_012719601.1;Name=WP_012719601.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF045247.2;locus_tag=RAF_RS02415;product=spore photoproduct lyase family protein;protein_id=WP_012719601.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	468072	468280	.	+	.	ID=gene-RAF_RS02420;Name=RAF_RS02420;end_range=468280,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02420;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	468072	468280	.	+	0	ID=cds-RAF_RS02420;Parent=gene-RAF_RS02420;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=468280,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770058.1;locus_tag=RAF_RS02420;partial=true;product=DUF4385 family protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	468436	468795	.	+	.	ID=gene-RAF_RS02425;Name=RAF_RS02425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02425;old_locus_tag=RAF_ORF0438
NC_012633.1	Protein Homology	CDS	468436	468795	.	+	0	ID=cds-WP_012719602.1;Parent=gene-RAF_RS02425;Dbxref=GenBank:WP_012719602.1;Name=WP_012719602.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364613.1;locus_tag=RAF_RS02425;product=hypothetical protein;protein_id=WP_012719602.1;transl_table=11
NC_012633.1	RefSeq	gene	468936	471428	.	-	.	ID=gene-RAF_RS02430;Name=RAF_RS02430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02430;old_locus_tag=RAF_ORF0439
NC_012633.1	Protein Homology	CDS	468936	471428	.	-	0	ID=cds-WP_041472011.1;Parent=gene-RAF_RS02430;Dbxref=GenBank:WP_041472011.1;Name=WP_041472011.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150675.1;locus_tag=RAF_RS02430;product=AsmA family protein;protein_id=WP_041472011.1;transl_table=11
NC_012633.1	RefSeq	gene	471738	472235	.	-	.	ID=gene-RAF_RS02435;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=RAF_RS02435;old_locus_tag=RAF_ORF0440
NC_012633.1	Protein Homology	CDS	471738	472235	.	-	0	ID=cds-WP_012719604.1;Parent=gene-RAF_RS02435;Dbxref=GenBank:WP_012719604.1;Name=WP_012719604.1;Note=Essential for efficient processing of 16S rRNA;Ontology_term=GO:0006364,GO:0043022,GO:0005840;gbkey=CDS;gene=rimM;go_component=ribosome|0005840||IEA;go_function=ribosome binding|0043022||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977116.1;locus_tag=RAF_RS02435;product=ribosome maturation factor RimM;protein_id=WP_012719604.1;transl_table=11
NC_012633.1	RefSeq	gene	472298	474928	.	+	.	ID=gene-RAF_RS02440;Name=RAF_RS02440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02440;old_locus_tag=RAF_ORF0441
NC_012633.1	Protein Homology	CDS	472298	474928	.	+	0	ID=cds-WP_012719605.1;Parent=gene-RAF_RS02440;Dbxref=GenBank:WP_012719605.1;Name=WP_012719605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014363040.1;locus_tag=RAF_RS02440;product=AsmA-like C-terminal region-containing protein;protein_id=WP_012719605.1;transl_table=11
NC_012633.1	RefSeq	gene	474942	475184	.	+	.	ID=gene-RAF_RS02445;Name=RAF_RS02445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02445;old_locus_tag=RAF_ORF0442
NC_012633.1	Protein Homology	CDS	474942	475184	.	+	0	ID=cds-WP_012719606.1;Parent=gene-RAF_RS02445;Dbxref=GenBank:WP_012719606.1;Name=WP_012719606.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270889.1;locus_tag=RAF_RS02445;product=exodeoxyribonuclease VII small subunit;protein_id=WP_012719606.1;transl_table=11
NC_012633.1	RefSeq	gene	475222	475524	.	+	.	ID=gene-RAF_RS02450;Name=RAF_RS02450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02450
NC_012633.1	Protein Homology	CDS	475222	475524	.	+	0	ID=cds-WP_041471837.1;Parent=gene-RAF_RS02450;Dbxref=GenBank:WP_041471837.1;Name=WP_041471837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977118.1;locus_tag=RAF_RS02450;product=hypothetical protein;protein_id=WP_041471837.1;transl_table=11
NC_012633.1	RefSeq	gene	475514	475798	.	+	.	ID=gene-RAF_RS02455;Name=RAF_RS02455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02455
NC_012633.1	Protein Homology	CDS	475514	475798	.	+	0	ID=cds-WP_041471838.1;Parent=gene-RAF_RS02455;Dbxref=GenBank:WP_041471838.1;Name=WP_041471838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016916662.1;locus_tag=RAF_RS02455;product=hypothetical protein;protein_id=WP_041471838.1;transl_table=11
NC_012633.1	RefSeq	gene	475880	476605	.	+	.	ID=gene-RAF_RS02460;Name=RAF_RS02460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02460;old_locus_tag=RAF_ORF0445
NC_012633.1	Protein Homology	CDS	475880	476605	.	+	0	ID=cds-WP_012719607.1;Parent=gene-RAF_RS02460;Dbxref=GenBank:WP_012719607.1;Name=WP_012719607.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719607.1;locus_tag=RAF_RS02460;product=DUF4239 domain-containing protein;protein_id=WP_012719607.1;transl_table=11
NC_012633.1	RefSeq	gene	476571	477122	.	-	.	ID=gene-RAF_RS02465;Name=RAF_RS02465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02465;old_locus_tag=RAF_ORF0446
NC_012633.1	Protein Homology	CDS	476571	477122	.	-	0	ID=cds-WP_012719608.1;Parent=gene-RAF_RS02465;Dbxref=GenBank:WP_012719608.1;Name=WP_012719608.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719608.1;locus_tag=RAF_RS02465;product=DNA-3-methyladenine glycosylase;protein_id=WP_012719608.1;transl_table=11
NC_012633.1	RefSeq	gene	477416	477664	.	-	.	ID=gene-RAF_RS07630;Name=yidD;gbkey=Gene;gene=yidD;gene_biotype=protein_coding;locus_tag=RAF_RS07630;old_locus_tag=RAF_ORF0447
NC_012633.1	Protein Homology	CDS	477416	477664	.	-	0	ID=cds-WP_012719609.1;Parent=gene-RAF_RS07630;Dbxref=GenBank:WP_012719609.1;Name=WP_012719609.1;gbkey=CDS;gene=yidD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270894.1;locus_tag=RAF_RS07630;product=membrane protein insertion efficiency factor YidD;protein_id=WP_012719609.1;transl_table=11
NC_012633.1	RefSeq	gene	477657	478160	.	-	.	ID=gene-RAF_RS02470;Name=nuoE;gbkey=Gene;gene=nuoE;gene_biotype=protein_coding;locus_tag=RAF_RS02470;old_locus_tag=RAF_ORF0448
NC_012633.1	Protein Homology	CDS	477657	478160	.	-	0	ID=cds-WP_012719610.1;Parent=gene-RAF_RS02470;Dbxref=GenBank:WP_012719610.1;Name=WP_012719610.1;gbkey=CDS;gene=nuoE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477082.1;locus_tag=RAF_RS02470;product=NADH-quinone oxidoreductase subunit NuoE;protein_id=WP_012719610.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	478218	478488	.	-	.	ID=gene-RAF_RS10550;Name=RAF_RS10550;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10550;pseudo=true
NC_012633.1	Protein Homology	CDS	478218	478488	.	-	0	ID=cds-RAF_RS10550;Parent=gene-RAF_RS10550;Note=frameshifted;Ontology_term=GO:0004518;gbkey=CDS;go_function=nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270759.1;locus_tag=RAF_RS10550;product=GIY-YIG nuclease family protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	478586	479761	.	-	.	ID=gene-RAF_RS02475;Name=nuoD;gbkey=Gene;gene=nuoD;gene_biotype=protein_coding;locus_tag=RAF_RS02475;old_locus_tag=RAF_ORF0449
NC_012633.1	Protein Homology	CDS	478586	479761	.	-	0	ID=cds-WP_014273401.1;Parent=gene-RAF_RS02475;Dbxref=GenBank:WP_014273401.1;Name=WP_014273401.1;Ontology_term=GO:0050136;gbkey=CDS;gene=nuoD;go_function=NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010886274.1;locus_tag=RAF_RS02475;product=NADH dehydrogenase (quinone) subunit D;protein_id=WP_014273401.1;transl_table=11
NC_012633.1	RefSeq	gene	479860	480588	.	-	.	ID=gene-RAF_RS02480;Name=RAF_RS02480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02480;old_locus_tag=RAF_ORF0450
NC_012633.1	Protein Homology	CDS	479860	480588	.	-	0	ID=cds-WP_012719612.1;Parent=gene-RAF_RS02480;Dbxref=GenBank:WP_012719612.1;Name=WP_012719612.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443080.1;locus_tag=RAF_RS02480;product=NADH-quinone oxidoreductase subunit C;protein_id=WP_012719612.1;transl_table=11
NC_012633.1	RefSeq	gene	480566	481090	.	-	.	ID=gene-RAF_RS02485;Name=RAF_RS02485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02485;old_locus_tag=RAF_ORF0451
NC_012633.1	Protein Homology	CDS	480566	481090	.	-	0	ID=cds-WP_012719613.1;Parent=gene-RAF_RS02485;Dbxref=GenBank:WP_012719613.1;Name=WP_012719613.1;Ontology_term=GO:0008137,GO:0016655,GO:0048038,GO:0051539,GO:0005886,GO:0045271;gbkey=CDS;go_component=plasma membrane|0005886||IEA,respiratory chain complex I|0045271||IEA;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA,oxidoreductase activity%2C acting on NAD(P)H%2C quinone or similar compound as acceptor|0016655||IEA,quinone binding|0048038||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270898.1;locus_tag=RAF_RS02485;product=NuoB/complex I 20 kDa subunit family protein;protein_id=WP_012719613.1;transl_table=11
NC_012633.1	RefSeq	gene	481095	481466	.	-	.	ID=gene-RAF_RS02490;Name=RAF_RS02490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02490;old_locus_tag=RAF_ORF0452
NC_012633.1	Protein Homology	CDS	481095	481466	.	-	0	ID=cds-WP_012737002.1;Parent=gene-RAF_RS02490;Dbxref=GenBank:WP_012737002.1;Name=WP_012737002.1;Ontology_term=GO:0016655,GO:0048038,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=oxidoreductase activity%2C acting on NAD(P)H%2C quinone or similar compound as acceptor|0016655||IEA,quinone binding|0048038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014412885.1;locus_tag=RAF_RS02490;product=NADH-quinone oxidoreductase subunit A;protein_id=WP_012737002.1;transl_table=11
NC_012633.1	RefSeq	gene	481624	482859	.	-	.	ID=gene-RAF_RS02495;Name=RAF_RS02495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02495;old_locus_tag=RAF_ORF0453
NC_012633.1	Protein Homology	CDS	481624	482859	.	-	0	ID=cds-WP_012719614.1;Parent=gene-RAF_RS02495;Dbxref=GenBank:WP_012719614.1;Name=WP_012719614.1;Ontology_term=GO:0009103,GO:0008754,GO:0008755,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=O antigen ligase activity|0008754||IEA,O antigen polymerase activity|0008755||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977126.1;locus_tag=RAF_RS02495;product=O-antigen ligase family protein;protein_id=WP_012719614.1;transl_table=11
NC_012633.1	RefSeq	gene	482860	483333	.	-	.	ID=gene-RAF_RS02500;Name=RAF_RS02500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02500;old_locus_tag=RAF_ORF0454
NC_012633.1	Protein Homology	CDS	482860	483333	.	-	0	ID=cds-WP_012719615.1;Parent=gene-RAF_RS02500;Dbxref=GenBank:WP_012719615.1;Name=WP_012719615.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597499.1;locus_tag=RAF_RS02500;product=DUF2155 domain-containing protein;protein_id=WP_012719615.1;transl_table=11
NC_012633.1	RefSeq	gene	483996	484301	.	+	.	ID=gene-RAF_RS02505;Name=RAF_RS02505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02505
NC_012633.1	Protein Homology	CDS	483996	484301	.	+	0	ID=cds-WP_041471839.1;Parent=gene-RAF_RS02505;Dbxref=GenBank:WP_041471839.1;Name=WP_041471839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364623.1;locus_tag=RAF_RS02505;product=hypothetical protein;protein_id=WP_041471839.1;transl_table=11
NC_012633.1	RefSeq	gene	484301	484525	.	+	.	ID=gene-RAF_RS09735;Name=RAF_RS09735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09735
NC_012633.1	GeneMarkS-2+	CDS	484301	484525	.	+	0	ID=cds-WP_234943923.1;Parent=gene-RAF_RS09735;Dbxref=GenBank:WP_234943923.1;Name=WP_234943923.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09735;product=hypothetical protein;protein_id=WP_234943923.1;transl_table=11
NC_012633.1	RefSeq	gene	484570	484854	.	+	.	ID=gene-RAF_RS09740;Name=terL;gbkey=Gene;gene=terL;gene_biotype=protein_coding;locus_tag=RAF_RS09740
NC_012633.1	Protein Homology	CDS	484570	484854	.	+	0	ID=cds-WP_234943924.1;Parent=gene-RAF_RS09740;Dbxref=GenBank:WP_234943924.1;Name=WP_234943924.1;gbkey=CDS;gene=terL;inference=COORDINATES: protein motif:HMM:TIGR01630.1;locus_tag=RAF_RS09740;product=phage terminase large subunit;protein_id=WP_234943924.1;transl_table=11
NC_012633.1	RefSeq	gene	485051	485125	.	+	.	ID=gene-RAF_RS02515;Name=RAF_RS02515;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS02515;old_locus_tag=RAF_RNA11
NC_012633.1	tRNAscan-SE	tRNA	485051	485125	.	+	.	ID=rna-RAF_RS02515;Parent=gene-RAF_RS02515;anticodon=(pos:485083..485085);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS02515;product=tRNA-Cys
NC_012633.1	tRNAscan-SE	exon	485051	485125	.	+	.	ID=exon-RAF_RS02515-1;Parent=rna-RAF_RS02515;anticodon=(pos:485083..485085);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS02515;product=tRNA-Cys
NC_012633.1	RefSeq	gene	485147	486067	.	+	.	ID=gene-RAF_RS02520;Name=RAF_RS02520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02520;old_locus_tag=RAF_ORF0459
NC_012633.1	Protein Homology	CDS	485147	486067	.	+	0	ID=cds-WP_004995969.1;Parent=gene-RAF_RS02520;Dbxref=GenBank:WP_004995969.1;Name=WP_004995969.1;Ontology_term=GO:0006310,GO:0006313,GO:0007049,GO:0051301,GO:0003677,GO:0009009,GO:0009037;gbkey=CDS;go_function=DNA binding|0003677||IEA,site-specific recombinase activity|0009009||IEA,tyrosine-based site-specific recombinase activity|0009037||IEA;go_process=DNA recombination|0006310||IEA,DNA transposition|0006313||IEA,cell cycle|0007049||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477663.1;locus_tag=RAF_RS02520;product=site-specific tyrosine recombinase XerD;protein_id=WP_004995969.1;transl_table=11
NC_012633.1	RefSeq	gene	486151	487170	.	+	.	ID=gene-RAF_RS02525;Name=RAF_RS02525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02525;old_locus_tag=RAF_ORF0460
NC_012633.1	Protein Homology	CDS	486151	487170	.	+	0	ID=cds-WP_012719616.1;Parent=gene-RAF_RS02525;Dbxref=GenBank:WP_012719616.1;Name=WP_012719616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945617.1;locus_tag=RAF_RS02525;product=DUF5410 family protein;protein_id=WP_012719616.1;transl_table=11
NC_012633.1	RefSeq	gene	487282	488445	.	+	.	ID=gene-RAF_RS02530;Name=RAF_RS02530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02530;old_locus_tag=RAF_ORF0461
NC_012633.1	Protein Homology	CDS	487282	488445	.	+	0	ID=cds-WP_041471840.1;Parent=gene-RAF_RS02530;Dbxref=GenBank:WP_041471840.1;Name=WP_041471840.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014363031.1;locus_tag=RAF_RS02530;product=DUF5410 domain-containing protein;protein_id=WP_041471840.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	488632	489418	.	-	.	ID=gene-RAF_RS02535;Name=fabI;gbkey=Gene;gene=fabI;gene_biotype=pseudogene;locus_tag=RAF_RS02535;old_locus_tag=RAF_ORF0462;pseudo=true
NC_012633.1	Protein Homology	CDS	488632	489418	.	-	0	ID=cds-RAF_RS02535;Parent=gene-RAF_RS02535;Note=frameshifted;gbkey=CDS;gene=fabI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597508.1;locus_tag=RAF_RS02535;product=enoyl-ACP reductase FabI;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	489494	491008	.	+	.	ID=gene-RAF_RS02540;Name=lnt;gbkey=Gene;gene=lnt;gene_biotype=protein_coding;locus_tag=RAF_RS02540;old_locus_tag=RAF_ORF0463
NC_012633.1	Protein Homology	CDS	489494	491008	.	+	0	ID=cds-WP_012719619.1;Parent=gene-RAF_RS02540;Dbxref=GenBank:WP_012719619.1;Name=WP_012719619.1;Ontology_term=GO:0042158,GO:0016410,GO:0016020;gbkey=CDS;gene=lnt;go_component=membrane|0016020||IEA;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipoprotein biosynthetic process|0042158||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014120715.1;locus_tag=RAF_RS02540;product=apolipoprotein N-acyltransferase;protein_id=WP_012719619.1;transl_table=11
NC_012633.1	RefSeq	gene	491698	492501	.	+	.	ID=gene-RAF_RS02550;Name=RAF_RS02550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02550;old_locus_tag=RAF_ORF0464
NC_012633.1	Protein Homology	CDS	491698	492501	.	+	0	ID=cds-WP_012719620.1;Parent=gene-RAF_RS02550;Dbxref=GenBank:WP_012719620.1;Name=WP_012719620.1;Ontology_term=GO:0071555,GO:0008270,GO:0008745;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014120716.1;locus_tag=RAF_RS02550;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_012719620.1;transl_table=11
NC_012633.1	RefSeq	gene	492953	493870	.	+	.	ID=gene-RAF_RS02555;Name=RAF_RS02555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02555;old_locus_tag=RAF_ORF0465
NC_012633.1	Protein Homology	CDS	492953	493870	.	+	0	ID=cds-WP_012719621.1;Parent=gene-RAF_RS02555;Dbxref=GenBank:WP_012719621.1;Name=WP_012719621.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995962.1;locus_tag=RAF_RS02555;product=ABC transporter substrate binding protein;protein_id=WP_012719621.1;transl_table=11
NC_012633.1	RefSeq	gene	493875	494714	.	+	.	ID=gene-RAF_RS02560;Name=RAF_RS02560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02560;old_locus_tag=RAF_ORF0466
NC_012633.1	Protein Homology	CDS	493875	494714	.	+	0	ID=cds-WP_004995960.1;Parent=gene-RAF_RS02560;Dbxref=GenBank:WP_004995960.1;Name=WP_004995960.1;Ontology_term=GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926171.1;locus_tag=RAF_RS02560;product=ABC transporter permease;protein_id=WP_004995960.1;transl_table=11
NC_012633.1	RefSeq	gene	494711	495433	.	+	.	ID=gene-RAF_RS02565;Name=RAF_RS02565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02565;old_locus_tag=RAF_ORF0467
NC_012633.1	Protein Homology	CDS	494711	495433	.	+	0	ID=cds-WP_012719623.1;Parent=gene-RAF_RS02565;Dbxref=GenBank:WP_012719623.1;Name=WP_012719623.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014363029.1;locus_tag=RAF_RS02565;product=ATP-binding cassette domain-containing protein;protein_id=WP_012719623.1;transl_table=11
NC_012633.1	RefSeq	gene	495513	495929	.	-	.	ID=gene-RAF_RS02570;Name=RAF_RS02570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02570;old_locus_tag=RAF_ORF0468
NC_012633.1	Protein Homology	CDS	495513	495929	.	-	0	ID=cds-WP_041471841.1;Parent=gene-RAF_RS02570;Dbxref=GenBank:WP_041471841.1;Name=WP_041471841.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273413.1;locus_tag=RAF_RS02570;product=hypothetical protein;protein_id=WP_041471841.1;transl_table=11
NC_012633.1	RefSeq	gene	496161	496367	.	-	.	ID=gene-RAF_RS07655;Name=RAF_RS07655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07655
NC_012633.1	Protein Homology	CDS	496161	496367	.	-	0	ID=cds-WP_004995956.1;Parent=gene-RAF_RS07655;Dbxref=GenBank:WP_004995956.1;Name=WP_004995956.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977141.1;locus_tag=RAF_RS07655;product=ankyrin repeat domain-containing protein;protein_id=WP_004995956.1;transl_table=11
NC_012633.1	RefSeq	gene	496376	496690	.	-	.	ID=gene-RAF_RS09750;Name=RAF_RS09750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09750
NC_012633.1	Protein Homology	CDS	496376	496690	.	-	0	ID=cds-WP_327203442.1;Parent=gene-RAF_RS09750;Dbxref=GenBank:WP_327203442.1;Name=WP_327203442.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: protein motif:HMM:NF024206.5;locus_tag=RAF_RS09750;product=ankyrin repeat domain-containing protein;protein_id=WP_327203442.1;transl_table=11
NC_012633.1	RefSeq	gene	496741	496893	.	-	.	ID=gene-RAF_RS09760;Name=RAF_RS09760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09760
NC_012633.1	Protein Homology	CDS	496741	496893	.	-	0	ID=cds-WP_234943926.1;Parent=gene-RAF_RS09760;Dbxref=GenBank:WP_234943926.1;Name=WP_234943926.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977142.1;locus_tag=RAF_RS09760;product=hypothetical protein;protein_id=WP_234943926.1;transl_table=11
NC_012633.1	RefSeq	gene	497244	497762	.	-	.	ID=gene-RAF_RS07665;Name=RAF_RS07665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07665;old_locus_tag=RAF_ORF0471
NC_012633.1	Protein Homology	CDS	497244	497762	.	-	0	ID=cds-WP_012719625.1;Parent=gene-RAF_RS07665;Dbxref=GenBank:WP_012719625.1;Name=WP_012719625.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014120723.1;locus_tag=RAF_RS07665;product=disulfide bond formation protein B;protein_id=WP_012719625.1;transl_table=11
NC_012633.1	RefSeq	gene	497941	499509	.	+	.	ID=gene-RAF_RS02590;Name=RAF_RS02590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02590;old_locus_tag=RAF_ORF0472
NC_012633.1	Protein Homology	CDS	497941	499509	.	+	0	ID=cds-WP_012719626.1;Parent=gene-RAF_RS02590;Dbxref=GenBank:WP_012719626.1;Name=WP_012719626.1;Ontology_term=GO:0006430,GO:0000049,GO:0004824,GO:0005524;gbkey=CDS;go_function=tRNA binding|0000049||IEA,lysine-tRNA ligase activity|0004824||IEA,ATP binding|0005524||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041471717.1;locus_tag=RAF_RS02590;product=lysine--tRNA ligase;protein_id=WP_012719626.1;transl_table=11
NC_012633.1	RefSeq	gene	499643	500575	.	+	.	ID=gene-RAF_RS02595;Name=RAF_RS02595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02595;old_locus_tag=RAF_ORF0473
NC_012633.1	Protein Homology	CDS	499643	500575	.	+	0	ID=cds-WP_012719627.1;Parent=gene-RAF_RS02595;Dbxref=GenBank:WP_012719627.1;Name=WP_012719627.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736931.1;locus_tag=RAF_RS02595;product=AEC family transporter;protein_id=WP_012719627.1;transl_table=11
NC_012633.1	RefSeq	gene	500715	503018	.	+	.	ID=gene-RAF_RS02600;Name=RAF_RS02600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02600;old_locus_tag=RAF_ORF0474
NC_012633.1	Protein Homology	CDS	500715	503018	.	+	0	ID=cds-WP_012719628.1;Parent=gene-RAF_RS02600;Dbxref=GenBank:WP_012719628.1;Name=WP_012719628.1;Ontology_term=GO:0004470,GO:0004471,GO:0051287;gbkey=CDS;go_function=malic enzyme activity|0004470||IEA,malate dehydrogenase (decarboxylating) (NAD+) activity|0004471||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443106.1;locus_tag=RAF_RS02600;product=NADP-dependent malic enzyme;protein_id=WP_012719628.1;transl_table=11
NC_012633.1	RefSeq	gene	503682	503912	.	+	.	ID=gene-RAF_RS02605;Name=RAF_RS02605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02605
NC_012633.1	Protein Homology	CDS	503682	503912	.	+	0	ID=cds-WP_014410614.1;Parent=gene-RAF_RS02605;Dbxref=GenBank:WP_014410614.1;Name=WP_014410614.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410614.1;locus_tag=RAF_RS02605;product=hypothetical protein;protein_id=WP_014410614.1;transl_table=11
NC_012633.1	RefSeq	gene	504128	504514	.	-	.	ID=gene-RAF_RS02610;Name=RAF_RS02610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02610;old_locus_tag=RAF_ORF0475
NC_012633.1	Protein Homology	CDS	504128	504514	.	-	0	ID=cds-WP_041471844.1;Parent=gene-RAF_RS02610;Dbxref=GenBank:WP_041471844.1;Name=WP_041471844.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830727.1;locus_tag=RAF_RS02610;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_041471844.1;transl_table=11
NC_012633.1	RefSeq	gene	504507	504755	.	-	.	ID=gene-RAF_RS02615;Name=RAF_RS02615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02615;old_locus_tag=RAF_ORF0476
NC_012633.1	Protein Homology	CDS	504507	504755	.	-	0	ID=cds-WP_010977150.1;Parent=gene-RAF_RS02615;Dbxref=GenBank:WP_010977150.1;Name=WP_010977150.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770086.1;locus_tag=RAF_RS02615;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=WP_010977150.1;transl_table=11
NC_012633.1	RefSeq	gene	504992	506209	.	+	.	ID=gene-RAF_RS02620;Name=RAF_RS02620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02620;old_locus_tag=RAF_ORF0477
NC_012633.1	Protein Homology	CDS	504992	506209	.	+	0	ID=cds-WP_012719630.1;Parent=gene-RAF_RS02620;Dbxref=GenBank:WP_012719630.1;Name=WP_012719630.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016916692.1;locus_tag=RAF_RS02620;product=MFS transporter;protein_id=WP_012719630.1;transl_table=11
NC_012633.1	RefSeq	gene	506411	506596	.	-	.	ID=gene-RAF_RS02625;Name=RAF_RS02625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02625
NC_012633.1	Protein Homology	CDS	506411	506596	.	-	0	ID=cds-WP_004995935.1;Parent=gene-RAF_RS02625;Dbxref=GenBank:WP_004995935.1;Name=WP_004995935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419784.1;locus_tag=RAF_RS02625;product=hypothetical protein;protein_id=WP_004995935.1;transl_table=11
NC_012633.1	RefSeq	gene	506732	507079	.	-	.	ID=gene-RAF_RS02630;Name=RAF_RS02630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02630
NC_012633.1	Protein Homology	CDS	506732	507079	.	-	0	ID=cds-WP_041471845.1;Parent=gene-RAF_RS02630;Dbxref=GenBank:WP_041471845.1;Name=WP_041471845.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019231670.1;locus_tag=RAF_RS02630;product=hypothetical protein;protein_id=WP_041471845.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	507104	507315	.	-	.	ID=gene-RAF_RS10555;Name=RAF_RS10555;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10555;pseudo=true
NC_012633.1	Protein Homology	CDS	507104	507315	.	-	0	ID=cds-RAF_RS10555;Parent=gene-RAF_RS10555;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150712.1;locus_tag=RAF_RS10555;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	507472	507990	.	-	.	ID=gene-RAF_RS02635;Name=RAF_RS02635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02635
NC_012633.1	Protein Homology	CDS	507472	507990	.	-	0	ID=cds-WP_041471846.1;Parent=gene-RAF_RS02635;Dbxref=GenBank:WP_041471846.1;Name=WP_041471846.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995924.1;locus_tag=RAF_RS02635;product=hypothetical protein;protein_id=WP_041471846.1;transl_table=11
NC_012633.1	RefSeq	gene	508138	508275	.	-	.	ID=gene-RAF_RS09765;Name=RAF_RS09765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09765
NC_012633.1	GeneMarkS-2+	CDS	508138	508275	.	-	0	ID=cds-WP_162465575.1;Parent=gene-RAF_RS09765;Dbxref=GenBank:WP_162465575.1;Name=WP_162465575.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09765;product=hypothetical protein;protein_id=WP_162465575.1;transl_table=11
NC_012633.1	RefSeq	gene	508311	509246	.	-	.	ID=gene-RAF_RS09770;Name=RAF_RS09770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09770
NC_012633.1	Protein Homology	CDS	508311	509246	.	-	0	ID=cds-WP_234943927.1;Parent=gene-RAF_RS09770;Dbxref=GenBank:WP_234943927.1;Name=WP_234943927.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977158.1;locus_tag=RAF_RS09770;product=hypothetical protein;protein_id=WP_234943927.1;transl_table=11
NC_012633.1	RefSeq	gene	509630	510574	.	-	.	ID=gene-RAF_RS02660;Name=mdh;gbkey=Gene;gene=mdh;gene_biotype=protein_coding;locus_tag=RAF_RS02660;old_locus_tag=RAF_ORF0481
NC_012633.1	Protein Homology	CDS	509630	510574	.	-	0	ID=cds-WP_012719631.1;Parent=gene-RAF_RS02660;Dbxref=GenBank:WP_012719631.1;Name=WP_012719631.1;Ontology_term=GO:0005975,GO:0016616;gbkey=CDS;gene=mdh;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477313.1;locus_tag=RAF_RS02660;product=malate dehydrogenase;protein_id=WP_012719631.1;transl_table=11
NC_012633.1	RefSeq	gene	511131	511298	.	+	.	ID=gene-RAF_RS09775;Name=RAF_RS09775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09775
NC_012633.1	Protein Homology	CDS	511131	511298	.	+	0	ID=cds-WP_032849810.1;Parent=gene-RAF_RS09775;Dbxref=GenBank:WP_032849810.1;Name=WP_032849810.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410623.1;locus_tag=RAF_RS09775;product=hypothetical protein;protein_id=WP_032849810.1;transl_table=11
NC_012633.1	RefSeq	gene	512072	513595	.	-	.	ID=gene-RAF_RS02675;Name=tlc2;gbkey=Gene;gene=tlc2;gene_biotype=protein_coding;locus_tag=RAF_RS02675;old_locus_tag=RAF_ORF0483
NC_012633.1	Protein Homology	CDS	512072	513595	.	-	0	ID=cds-WP_012719633.1;Parent=gene-RAF_RS02675;Dbxref=GenBank:WP_012719633.1;Name=WP_012719633.1;gbkey=CDS;gene=tlc2;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597535.1;locus_tag=RAF_RS02675;product=nucleotide exchange transporter Tlc2;protein_id=WP_012719633.1;transl_table=11
NC_012633.1	RefSeq	gene	513804	515417	.	-	.	ID=gene-RAF_RS02680;Name=RAF_RS02680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02680;old_locus_tag=RAF_ORF0484
NC_012633.1	Protein Homology	CDS	513804	515417	.	-	0	ID=cds-WP_012719634.1;Parent=gene-RAF_RS02680;Dbxref=GenBank:WP_012719634.1;Name=WP_012719634.1;Ontology_term=GO:0006221,GO:0006241,GO:0003883;gbkey=CDS;go_function=CTP synthase activity|0003883||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA,CTP biosynthetic process|0006241||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190830.1;locus_tag=RAF_RS02680;product=CTP synthase;protein_id=WP_012719634.1;transl_table=11
NC_012633.1	RefSeq	gene	515420	516160	.	-	.	ID=gene-RAF_RS02685;Name=RAF_RS02685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02685;old_locus_tag=RAF_ORF0485
NC_012633.1	Protein Homology	CDS	515420	516160	.	-	0	ID=cds-WP_012719635.1;Parent=gene-RAF_RS02685;Dbxref=GenBank:WP_012719635.1;Name=WP_012719635.1;Ontology_term=GO:0008690;gbkey=CDS;go_function=3-deoxy-manno-octulosonate cytidylyltransferase activity|0008690||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599440.1;locus_tag=RAF_RS02685;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=WP_012719635.1;transl_table=11
NC_012633.1	RefSeq	gene	516259	516334	.	+	.	ID=gene-RAF_RS02690;Name=RAF_RS02690;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS02690;old_locus_tag=RAF_RNA12
NC_012633.1	tRNAscan-SE	tRNA	516259	516334	.	+	.	ID=rna-RAF_RS02690;Parent=gene-RAF_RS02690;anticodon=(pos:516292..516294);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS02690;product=tRNA-Lys
NC_012633.1	tRNAscan-SE	exon	516259	516334	.	+	.	ID=exon-RAF_RS02690-1;Parent=rna-RAF_RS02690;anticodon=(pos:516292..516294);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS02690;product=tRNA-Lys
NC_012633.1	RefSeq	gene	516349	516425	.	+	.	ID=gene-RAF_RS02695;Name=RAF_RS02695;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS02695;old_locus_tag=RAF_RNA13
NC_012633.1	tRNAscan-SE	tRNA	516349	516425	.	+	.	ID=rna-RAF_RS02695;Parent=gene-RAF_RS02695;anticodon=(pos:516383..516385);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS02695;product=tRNA-Ile
NC_012633.1	tRNAscan-SE	exon	516349	516425	.	+	.	ID=exon-RAF_RS02695-1;Parent=rna-RAF_RS02695;anticodon=(pos:516383..516385);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS02695;product=tRNA-Ile
NC_012633.1	RefSeq	gene	516932	517222	.	-	.	ID=gene-RAF_RS07690;Name=RAF_RS07690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07690;old_locus_tag=RAF_ORF0487
NC_012633.1	Protein Homology	CDS	516932	517222	.	-	0	ID=cds-WP_012719637.1;Parent=gene-RAF_RS07690;Dbxref=GenBank:WP_012719637.1;Name=WP_012719637.1;Ontology_term=GO:0006203,GO:0009132,GO:0042262,GO:0017110,GO:0046872,GO:0047429;gbkey=CDS;go_function=nucleoside diphosphate phosphatase activity|0017110||IEA,metal ion binding|0046872||IEA,nucleoside triphosphate diphosphatase activity|0047429||IEA;go_process=dGTP catabolic process|0006203||IEA,nucleoside diphosphate metabolic process|0009132||IEA,DNA protection|0042262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728066.1;locus_tag=RAF_RS07690;product=nucleotide triphosphate diphosphatase NUDT15;protein_id=WP_012719637.1;transl_table=11
NC_012633.1	RefSeq	gene	517389	518912	.	+	.	ID=gene-RAF_RS02705;Name=RAF_RS02705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02705;old_locus_tag=RAF_ORF0488
NC_012633.1	Protein Homology	CDS	517389	518912	.	+	0	ID=cds-WP_012719638.1;Parent=gene-RAF_RS02705;Dbxref=GenBank:WP_012719638.1;Name=WP_012719638.1;Ontology_term=GO:0009060,GO:0004129,GO:0020037,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=cytochrome-c oxidase activity|0004129||IEA,heme binding|0020037||IEA;go_process=aerobic respiration|0009060||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770098.1;locus_tag=RAF_RS02705;product=cbb3-type cytochrome c oxidase subunit I;protein_id=WP_012719638.1;transl_table=11
NC_012633.1	RefSeq	gene	518905	519474	.	+	.	ID=gene-RAF_RS02710;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=RAF_RS02710;old_locus_tag=RAF_ORF0489
NC_012633.1	Protein Homology	CDS	518905	519474	.	+	0	ID=cds-WP_012719639.1;Parent=gene-RAF_RS02710;Dbxref=GenBank:WP_012719639.1;Name=WP_012719639.1;Ontology_term=GO:0046654,GO:0003934;gbkey=CDS;gene=folE;go_function=GTP cyclohydrolase I activity|0003934||IEA;go_process=tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597557.1;locus_tag=RAF_RS02710;product=GTP cyclohydrolase I FolE;protein_id=WP_012719639.1;transl_table=11
NC_012633.1	RefSeq	gene	519639	520919	.	+	.	ID=gene-RAF_RS02715;Name=proS;gbkey=Gene;gene=proS;gene_biotype=protein_coding;locus_tag=RAF_RS02715;old_locus_tag=RAF_ORF0490
NC_012633.1	Protein Homology	CDS	519639	520919	.	+	0	ID=cds-WP_010977166.1;Parent=gene-RAF_RS02715;Dbxref=GenBank:WP_010977166.1;Name=WP_010977166.1;Ontology_term=GO:0006433,GO:0004827;gbkey=CDS;gene=proS;go_function=proline-tRNA ligase activity|0004827||IEA;go_process=prolyl-tRNA aminoacylation|0006433||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014120734.1;locus_tag=RAF_RS02715;product=proline--tRNA ligase;protein_id=WP_010977166.1;transl_table=11
NC_012633.1	RefSeq	gene	521132	522100	.	+	.	ID=gene-RAF_RS02720;Name=RAF_RS02720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02720;old_locus_tag=RAF_ORF0491
NC_012633.1	Protein Homology	CDS	521132	522100	.	+	0	ID=cds-WP_012719640.1;Parent=gene-RAF_RS02720;Dbxref=GenBank:WP_012719640.1;Name=WP_012719640.1;Ontology_term=GO:0000287,GO:0005524,GO:0042803;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,ATP binding|0005524||IEA,protein homodimerization activity|0042803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392157.1;locus_tag=RAF_RS02720;product=Fic family protein;protein_id=WP_012719640.1;transl_table=11
NC_012633.1	RefSeq	gene	522291	522497	.	+	.	ID=gene-RAF_RS02725;Name=RAF_RS02725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02725;old_locus_tag=RAF_ORF0492
NC_012633.1	Protein Homology	CDS	522291	522497	.	+	0	ID=cds-WP_004995893.1;Parent=gene-RAF_RS02725;Dbxref=GenBank:WP_004995893.1;Name=WP_004995893.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010423269.1;locus_tag=RAF_RS02725;product=hypothetical protein;protein_id=WP_004995893.1;transl_table=11
NC_012633.1	RefSeq	gene	522502	523113	.	+	.	ID=gene-RAF_RS02730;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=RAF_RS02730;old_locus_tag=RAF_ORF0493
NC_012633.1	Protein Homology	CDS	522502	523113	.	+	0	ID=cds-WP_012719641.1;Parent=gene-RAF_RS02730;Dbxref=GenBank:WP_012719641.1;Name=WP_012719641.1;Ontology_term=GO:0006281,GO:0006310,GO:0003678,GO:0009378,GO:0009379;gbkey=CDS;gene=ruvA;go_component=Holliday junction helicase complex|0009379||IEA;go_function=DNA helicase activity|0003678||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977169.1;locus_tag=RAF_RS02730;product=Holliday junction branch migration protein RuvA;protein_id=WP_012719641.1;transl_table=11
NC_012633.1	RefSeq	gene	523748	524035	.	+	.	ID=gene-RAF_RS02740;Name=RAF_RS02740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02740;old_locus_tag=RAF_ORF0494
NC_012633.1	Protein Homology	CDS	523748	524035	.	+	0	ID=cds-WP_012719642.1;Parent=gene-RAF_RS02740;Dbxref=GenBank:WP_012719642.1;Name=WP_012719642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770102.1;locus_tag=RAF_RS02740;product=hypothetical protein;protein_id=WP_012719642.1;transl_table=11
NC_012633.1	RefSeq	gene	524111	525139	.	+	.	ID=gene-RAF_RS02745;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=RAF_RS02745;old_locus_tag=RAF_ORF0495
NC_012633.1	Protein Homology	CDS	524111	525139	.	+	0	ID=cds-WP_012719643.1;Parent=gene-RAF_RS02745;Dbxref=GenBank:WP_012719643.1;Name=WP_012719643.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0005524,GO:0009378;gbkey=CDS;gene=ruvB;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477596.1;locus_tag=RAF_RS02745;product=Holliday junction branch migration DNA helicase RuvB;protein_id=WP_012719643.1;transl_table=11
NC_012633.1	RefSeq	gene	525132	526895	.	+	.	ID=gene-RAF_RS02750;Name=RAF_RS02750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02750;old_locus_tag=RAF_ORF0496
NC_012633.1	Protein Homology	CDS	525132	526895	.	+	0	ID=cds-WP_012719644.1;Parent=gene-RAF_RS02750;Dbxref=GenBank:WP_012719644.1;Name=WP_012719644.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719644.1;locus_tag=RAF_RS02750;product=ABC transporter ATP-binding protein;protein_id=WP_012719644.1;transl_table=11
NC_012633.1	RefSeq	gene	527089	528333	.	+	.	ID=gene-RAF_RS02755;Name=RAF_RS02755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02755;old_locus_tag=RAF_ORF0497
NC_012633.1	Protein Homology	CDS	527089	528333	.	+	0	ID=cds-WP_012719645.1;Parent=gene-RAF_RS02755;Dbxref=GenBank:WP_012719645.1;Name=WP_012719645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477594.1;locus_tag=RAF_RS02755;product=AmpG family muropeptide MFS transporter;protein_id=WP_012719645.1;transl_table=11
NC_012633.1	RefSeq	gene	528510	529430	.	+	.	ID=gene-RAF_RS02760;Name=RAF_RS02760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02760;old_locus_tag=RAF_ORF0498
NC_012633.1	Protein Homology	CDS	528510	529430	.	+	0	ID=cds-WP_012719646.1;Parent=gene-RAF_RS02760;Dbxref=GenBank:WP_012719646.1;Name=WP_012719646.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926199.1;locus_tag=RAF_RS02760;product=D-alanyl-D-alanine carboxypeptidase family protein;protein_id=WP_012719646.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	529438	529537	.	+	.	ID=gene-RAF_RS10710;Name=RAF_RS10710;end_range=529537,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10710;partial=true;pseudo=true;start_range=.,529438
NC_012633.1	Protein Homology	CDS	529438	529537	.	+	0	ID=cds-RAF_RS10710;Parent=gene-RAF_RS10710;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=529537,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770098.1;locus_tag=RAF_RS10710;partial=true;product=lytic transglycosylase domain-containing protein;pseudo=true;start_range=.,529438;transl_table=11
NC_012633.1	RefSeq	gene	529600	530562	.	-	.	ID=gene-RAF_RS02765;Name=RAF_RS02765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02765;old_locus_tag=RAF_ORF0499
NC_012633.1	Protein Homology	CDS	529600	530562	.	-	0	ID=cds-WP_012719647.1;Parent=gene-RAF_RS02765;Dbxref=GenBank:WP_012719647.1;Name=WP_012719647.1;Ontology_term=GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728062.1;locus_tag=RAF_RS02765;product=septal ring lytic transglycosylase RlpA family protein;protein_id=WP_012719647.1;transl_table=11
NC_012633.1	RefSeq	gene	530540	531157	.	-	.	ID=gene-RAF_RS02770;Name=RAF_RS02770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02770;old_locus_tag=RAF_ORF0500
NC_012633.1	Protein Homology	CDS	530540	531157	.	-	0	ID=cds-WP_012719648.1;Parent=gene-RAF_RS02770;Dbxref=GenBank:WP_012719648.1;Name=WP_012719648.1;Ontology_term=GO:0008289;gbkey=CDS;go_function=lipid binding|0008289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443007.1;locus_tag=RAF_RS02770;product=BON domain-containing protein;protein_id=WP_012719648.1;transl_table=11
NC_012633.1	RefSeq	gene	531390	531932	.	-	.	ID=gene-RAF_RS02775;Name=RAF_RS02775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02775;old_locus_tag=RAF_ORF0501
NC_012633.1	Protein Homology	CDS	531390	531932	.	-	0	ID=cds-WP_004995863.1;Parent=gene-RAF_RS02775;Dbxref=GenBank:WP_004995863.1;Name=WP_004995863.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010423250.1;locus_tag=RAF_RS02775;product=septation protein A;protein_id=WP_004995863.1;transl_table=11
NC_012633.1	RefSeq	gene	531962	532810	.	-	.	ID=gene-RAF_RS02780;Name=RAF_RS02780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02780;old_locus_tag=RAF_ORF0502
NC_012633.1	Protein Homology	CDS	531962	532810	.	-	0	ID=cds-WP_010977176.1;Parent=gene-RAF_RS02780;Dbxref=GenBank:WP_010977176.1;Name=WP_010977176.1;Ontology_term=GO:0034755,GO:0005381,GO:0016020,GO:0033573;gbkey=CDS;go_component=membrane|0016020||IEA,high-affinity iron permease complex|0033573||IEA;go_function=iron ion transmembrane transporter activity|0005381||IEA;go_process=iron ion transmembrane transport|0034755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443008.1;locus_tag=RAF_RS02780;product=FTR1 family protein;protein_id=WP_010977176.1;transl_table=11
NC_012633.1	RefSeq	gene	532820	533200	.	-	.	ID=gene-RAF_RS02785;Name=RAF_RS02785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02785;old_locus_tag=RAF_ORF0503
NC_012633.1	Protein Homology	CDS	532820	533200	.	-	0	ID=cds-WP_012719649.1;Parent=gene-RAF_RS02785;Dbxref=GenBank:WP_012719649.1;Name=WP_012719649.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599447.1;locus_tag=RAF_RS02785;product=cupredoxin domain-containing protein;protein_id=WP_012719649.1;transl_table=11
NC_012633.1	RefSeq	gene	533391	534386	.	-	.	ID=gene-RAF_RS02790;Name=RAF_RS02790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02790;old_locus_tag=RAF_ORF0504
NC_012633.1	Protein Homology	CDS	533391	534386	.	-	0	ID=cds-WP_012719650.1;Parent=gene-RAF_RS02790;Dbxref=GenBank:WP_012719650.1;Name=WP_012719650.1;Ontology_term=GO:0003755;gbkey=CDS;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443010.1;locus_tag=RAF_RS02790;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_012719650.1;transl_table=11
NC_012633.1	RefSeq	gene	534531	535157	.	+	.	ID=gene-RAF_RS02795;Name=RAF_RS02795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02795;old_locus_tag=RAF_ORF0505
NC_012633.1	Protein Homology	CDS	534531	535157	.	+	0	ID=cds-WP_012719651.1;Parent=gene-RAF_RS02795;Dbxref=GenBank:WP_012719651.1;Name=WP_012719651.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443011.1;locus_tag=RAF_RS02795;product=dioxygenase;protein_id=WP_012719651.1;transl_table=11
NC_012633.1	RefSeq	gene	535365	536009	.	+	.	ID=gene-RAF_RS02800;Name=RAF_RS02800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02800;old_locus_tag=RAF_ORF0506
NC_012633.1	Protein Homology	CDS	535365	536009	.	+	0	ID=cds-WP_012719652.1;Parent=gene-RAF_RS02800;Dbxref=GenBank:WP_012719652.1;Name=WP_012719652.1;Ontology_term=GO:0015036;gbkey=CDS;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014120748.1;locus_tag=RAF_RS02800;product=TlpA disulfide reductase family protein;protein_id=WP_012719652.1;transl_table=11
NC_012633.1	RefSeq	gene	536174	537088	.	+	.	ID=gene-RAF_RS02805;Name=RAF_RS02805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02805;old_locus_tag=RAF_ORF0507
NC_012633.1	Protein Homology	CDS	536174	537088	.	+	0	ID=cds-WP_004995853.1;Parent=gene-RAF_RS02805;Dbxref=GenBank:WP_004995853.1;Name=WP_004995853.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443013.1;locus_tag=RAF_RS02805;product=S49 family peptidase;protein_id=WP_004995853.1;transl_table=11
NC_012633.1	RefSeq	gene	537090	537536	.	+	.	ID=gene-RAF_RS02810;Name=dut;gbkey=Gene;gene=dut;gene_biotype=protein_coding;locus_tag=RAF_RS02810;old_locus_tag=RAF_ORF0508
NC_012633.1	Protein Homology	CDS	537090	537536	.	+	0	ID=cds-WP_010977182.1;Parent=gene-RAF_RS02810;Dbxref=GenBank:WP_010977182.1;Name=WP_010977182.1;Ontology_term=GO:0006226,GO:0046081,GO:0000287,GO:0004170;gbkey=CDS;gene=dut;go_function=magnesium ion binding|0000287||IEA,dUTP diphosphatase activity|0004170||IEA;go_process=dUMP biosynthetic process|0006226||IEA,dUTP catabolic process|0046081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012148808.1;locus_tag=RAF_RS02810;product=dUTP diphosphatase;protein_id=WP_010977182.1;transl_table=11
NC_012633.1	RefSeq	gene	537754	539715	.	+	.	ID=gene-RAF_RS02815;Name=RAF_RS02815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02815;old_locus_tag=RAF_ORF0509
NC_012633.1	Protein Homology	CDS	537754	539715	.	+	0	ID=cds-WP_012719653.1;Parent=gene-RAF_RS02815;Dbxref=GenBank:WP_012719653.1;Name=WP_012719653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719653.1;locus_tag=RAF_RS02815;product=lytic transglycosylase domain-containing protein;protein_id=WP_012719653.1;transl_table=11
NC_012633.1	RefSeq	gene	539802	540761	.	+	.	ID=gene-RAF_RS02820;Name=RAF_RS02820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02820;old_locus_tag=RAF_ORF0510
NC_012633.1	Protein Homology	CDS	539802	540761	.	+	0	ID=cds-WP_012719654.1;Parent=gene-RAF_RS02820;Dbxref=GenBank:WP_012719654.1;Name=WP_012719654.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364664.1;locus_tag=RAF_RS02820;product=hypothetical protein;protein_id=WP_012719654.1;transl_table=11
NC_012633.1	RefSeq	gene	540955	541902	.	+	.	ID=gene-RAF_RS02825;Name=RAF_RS02825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02825;old_locus_tag=RAF_ORF0511
NC_012633.1	Protein Homology	CDS	540955	541902	.	+	0	ID=cds-WP_012719655.1;Parent=gene-RAF_RS02825;Dbxref=GenBank:WP_012719655.1;Name=WP_012719655.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599449.1;locus_tag=RAF_RS02825;product=LD-carboxypeptidase;protein_id=WP_012719655.1;transl_table=11
NC_012633.1	RefSeq	gene	542081	544597	.	-	.	ID=gene-RAF_RS02830;Name=RAF_RS02830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02830;old_locus_tag=RAF_ORF0512
NC_012633.1	Protein Homology	CDS	542081	544597	.	-	0	ID=cds-WP_012719656.1;Parent=gene-RAF_RS02830;Dbxref=GenBank:WP_012719656.1;Name=WP_012719656.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443018.1;locus_tag=RAF_RS02830;product=PD-(D/E)XK nuclease family protein;protein_id=WP_012719656.1;transl_table=11
NC_012633.1	RefSeq	gene	544748	545149	.	+	.	ID=gene-RAF_RS02835;Name=RAF_RS02835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02835;old_locus_tag=RAF_ORF0513
NC_012633.1	Protein Homology	CDS	544748	545149	.	+	0	ID=cds-WP_012719657.1;Parent=gene-RAF_RS02835;Dbxref=GenBank:WP_012719657.1;Name=WP_012719657.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719657.1;locus_tag=RAF_RS02835;product=hypothetical protein;protein_id=WP_012719657.1;transl_table=11
NC_012633.1	RefSeq	gene	545153	545881	.	-	.	ID=gene-RAF_RS02840;Name=RAF_RS02840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02840;old_locus_tag=RAF_ORF0514
NC_012633.1	Protein Homology	CDS	545153	545881	.	-	0	ID=cds-WP_012719658.1;Parent=gene-RAF_RS02840;Dbxref=GenBank:WP_012719658.1;Name=WP_012719658.1;Ontology_term=GO:0016787,GO:0016811;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amides|0016811||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443019.1;locus_tag=RAF_RS02840;product=gamma-glutamyl-gamma-aminobutyrate hydrolase family protein;protein_id=WP_012719658.1;transl_table=11
NC_012633.1	RefSeq	gene	546079	547677	.	-	.	ID=gene-RAF_RS02845;Name=ctaD;gbkey=Gene;gene=ctaD;gene_biotype=protein_coding;locus_tag=RAF_RS02845;old_locus_tag=RAF_ORF0515
NC_012633.1	Protein Homology	CDS	546079	547677	.	-	0	ID=cds-WP_012719659.1;Parent=gene-RAF_RS02845;Dbxref=GenBank:WP_012719659.1;Name=WP_012719659.1;Ontology_term=GO:0015990,GO:0004129;gbkey=CDS;gene=ctaD;go_function=cytochrome-c oxidase activity|0004129||IEA;go_process=electron transport coupled proton transport|0015990||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995838.1;locus_tag=RAF_RS02845;product=cytochrome c oxidase subunit I;protein_id=WP_012719659.1;transl_table=11
NC_012633.1	RefSeq	gene	547683	548066	.	-	.	ID=gene-RAF_RS02850;Name=RAF_RS02850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02850;old_locus_tag=RAF_ORF0516
NC_012633.1	Protein Homology	CDS	547683	548066	.	-	0	ID=cds-WP_012719660.1;Parent=gene-RAF_RS02850;Dbxref=GenBank:WP_012719660.1;Name=WP_012719660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977190.1;locus_tag=RAF_RS02850;product=acetyltransferase;protein_id=WP_012719660.1;transl_table=11
NC_012633.1	RefSeq	gene	548259	549206	.	-	.	ID=gene-RAF_RS02855;Name=coxB;gbkey=Gene;gene=coxB;gene_biotype=protein_coding;locus_tag=RAF_RS02855;old_locus_tag=RAF_ORF0517
NC_012633.1	Protein Homology	CDS	548259	549206	.	-	0	ID=cds-WP_012719661.1;Parent=gene-RAF_RS02855;Dbxref=GenBank:WP_012719661.1;Name=WP_012719661.1;Ontology_term=GO:0004129,GO:0016020;gbkey=CDS;gene=coxB;go_component=membrane|0016020||IEA;go_function=cytochrome-c oxidase activity|0004129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977191.1;locus_tag=RAF_RS02855;product=cytochrome c oxidase subunit II;protein_id=WP_012719661.1;transl_table=11
NC_012633.1	RefSeq	gene	549390	549809	.	-	.	ID=gene-RAF_RS02860;Name=RAF_RS02860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02860;old_locus_tag=RAF_ORF0518
NC_012633.1	Protein Homology	CDS	549390	549809	.	-	0	ID=cds-WP_012719662.1;Parent=gene-RAF_RS02860;Dbxref=GenBank:WP_012719662.1;Name=WP_012719662.1;Ontology_term=GO:0009058,GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410653.1;locus_tag=RAF_RS02860;product=adenylyltransferase/cytidyltransferase family protein;protein_id=WP_012719662.1;transl_table=11
NC_012633.1	RefSeq	gene	550048	551412	.	+	.	ID=gene-RAF_RS02865;Name=RAF_RS02865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02865;old_locus_tag=RAF_ORF0519
NC_012633.1	Protein Homology	CDS	550048	551412	.	+	0	ID=cds-WP_012719663.1;Parent=gene-RAF_RS02865;Dbxref=GenBank:WP_012719663.1;Name=WP_012719663.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443023.1;locus_tag=RAF_RS02865;product=M23 family metallopeptidase;protein_id=WP_012719663.1;transl_table=11
NC_012633.1	RefSeq	gene	551606	552211	.	+	.	ID=gene-RAF_RS02870;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=RAF_RS02870;old_locus_tag=RAF_ORF0520
NC_012633.1	Protein Homology	CDS	551606	552211	.	+	0	ID=cds-WP_012719664.1;Parent=gene-RAF_RS02870;Dbxref=GenBank:WP_012719664.1;Name=WP_012719664.1;Ontology_term=GO:0006508,GO:0009306,GO:0004190,GO:0005886;gbkey=CDS;gene=lspA;go_component=plasma membrane|0005886||IEA;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=proteolysis|0006508||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443024.1;locus_tag=RAF_RS02870;product=signal peptidase II;protein_id=WP_012719664.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	552215	552330	.	+	.	ID=gene-RAF_RS08605;Name=RAF_RS08605;end_range=552330,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS08605;partial=true;pseudo=true;start_range=.,552215
NC_012633.1	Protein Homology	CDS	552215	552330	.	+	0	ID=cds-RAF_RS08605;Parent=gene-RAF_RS08605;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=552330,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995672.1;locus_tag=RAF_RS08605;partial=true;product=palindromic element RPE1 domain-containing protein;pseudo=true;start_range=.,552215;transl_table=11
NC_012633.1	RefSeq	gene	552364	552612	.	+	.	ID=gene-RAF_RS02875;Name=RAF_RS02875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02875;old_locus_tag=RAF_ORF0521
NC_012633.1	Protein Homology	CDS	552364	552612	.	+	0	ID=cds-WP_004995830.1;Parent=gene-RAF_RS02875;Dbxref=GenBank:WP_004995830.1;Name=WP_004995830.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597596.1;locus_tag=RAF_RS02875;product=DUF3035 domain-containing protein;protein_id=WP_004995830.1;transl_table=11
NC_012633.1	RefSeq	gene	552783	554285	.	+	.	ID=gene-RAF_RS02880;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=RAF_RS02880;old_locus_tag=RAF_ORF0522
NC_012633.1	Protein Homology	CDS	552783	554285	.	+	0	ID=cds-WP_012719665.1;Parent=gene-RAF_RS02880;Dbxref=GenBank:WP_012719665.1;Name=WP_012719665.1;Ontology_term=GO:0008360,GO:0009252,GO:0051301,GO:0005524,GO:0008764,GO:0005737;gbkey=CDS;gene=murD;go_component=cytoplasm|0005737||IEA;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoylalanine-D-glutamate ligase activity|0008764||IEA;go_process=regulation of cell shape|0008360||IEA,peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995827.1;locus_tag=RAF_RS02880;product=UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase;protein_id=WP_012719665.1;transl_table=11
NC_012633.1	RefSeq	gene	554417	555550	.	+	.	ID=gene-RAF_RS02885;Name=ftsW;gbkey=Gene;gene=ftsW;gene_biotype=protein_coding;locus_tag=RAF_RS02885;old_locus_tag=RAF_ORF0523
NC_012633.1	Protein Homology	CDS	554417	555550	.	+	0	ID=cds-WP_012719666.1;Parent=gene-RAF_RS02885;Dbxref=GenBank:WP_012719666.1;Name=WP_012719666.1;Ontology_term=GO:0009252,GO:0051301,GO:0016020;gbkey=CDS;gene=ftsW;go_component=membrane|0016020||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016916728.1;locus_tag=RAF_RS02885;product=putative lipid II flippase FtsW;protein_id=WP_012719666.1;transl_table=11
NC_012633.1	RefSeq	gene	555547	556677	.	+	.	ID=gene-RAF_RS02890;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=RAF_RS02890;old_locus_tag=RAF_ORF0524
NC_012633.1	Protein Homology	CDS	555547	556677	.	+	0	ID=cds-WP_012719667.1;Parent=gene-RAF_RS02890;Dbxref=GenBank:WP_012719667.1;Name=WP_012719667.1;Ontology_term=GO:0009252,GO:0050511;gbkey=CDS;gene=murG;go_function=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity|0050511||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012148792.1;locus_tag=RAF_RS02890;product=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase;protein_id=WP_012719667.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	556902	557072	.	-	.	ID=gene-RAF_RS02895;Name=RAF_RS02895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02895;partial=true;pseudo=true;start_range=.,556902
NC_012633.1	Protein Homology	CDS	556902	557072	.	-	0	ID=cds-RAF_RS02895;Parent=gene-RAF_RS02895;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364869.1;locus_tag=RAF_RS02895;partial=true;product=palindromic element RPE1 domain-containing protein;pseudo=true;start_range=.,556902;transl_table=11
NC_012633.1	RefSeq	gene	557073	557723	.	+	.	ID=gene-RAF_RS02900;Name=RAF_RS02900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02900;old_locus_tag=RAF_ORF0525
NC_012633.1	Protein Homology	CDS	557073	557723	.	+	0	ID=cds-WP_012719668.1;Parent=gene-RAF_RS02900;Dbxref=GenBank:WP_012719668.1;Name=WP_012719668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270967.1;locus_tag=RAF_RS02900;product=hypothetical protein;protein_id=WP_012719668.1;transl_table=11
NC_012633.1	RefSeq	gene	558234	558473	.	+	.	ID=gene-RAF_RS09110;Name=RAF_RS09110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09110
NC_012633.1	GeneMarkS-2+	CDS	558234	558473	.	+	0	ID=cds-WP_041471850.1;Parent=gene-RAF_RS09110;Dbxref=GenBank:WP_041471850.1;Name=WP_041471850.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09110;product=hypothetical protein;protein_id=WP_041471850.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	558510	558611	.	-	.	ID=gene-RAF_RS10715;Name=RAF_RS10715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10715;partial=true;pseudo=true;start_range=.,558510
NC_012633.1	Protein Homology	CDS	558510	558611	.	-	0	ID=cds-RAF_RS10715;Parent=gene-RAF_RS10715;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012262597.1;locus_tag=RAF_RS10715;partial=true;product=permease;pseudo=true;start_range=.,558510;transl_table=11
NC_012633.1	RefSeq	gene	558691	558858	.	-	.	ID=gene-RAF_RS10330;Name=RAF_RS10330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10330
NC_012633.1	Protein Homology	CDS	558691	558858	.	-	0	ID=cds-WP_041471851.1;Parent=gene-RAF_RS10330;Dbxref=GenBank:WP_041471851.1;Name=WP_041471851.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013069.5;locus_tag=RAF_RS10330;product=efflux RND transporter permease subunit;protein_id=WP_041471851.1;transl_table=11
NC_012633.1	RefSeq	gene	558899	559276	.	-	.	ID=gene-RAF_RS10565;Name=RAF_RS10565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10565
NC_012633.1	Protein Homology	CDS	558899	559276	.	-	0	ID=cds-WP_327203432.1;Parent=gene-RAF_RS10565;Dbxref=GenBank:WP_327203432.1;Name=WP_327203432.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: protein motif:HMM:NF013069.5;locus_tag=RAF_RS10565;product=efflux RND transporter permease subunit;protein_id=WP_327203432.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	559257	560078	.	-	.	ID=gene-RAF_RS09780;Name=RAF_RS09780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS09780;pseudo=true
NC_012633.1	Protein Homology	CDS	559257	560078	.	-	0	ID=cds-RAF_RS09780;Parent=gene-RAF_RS09780;Note=internal stop;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: protein motif:HMM:NF013069.5;locus_tag=RAF_RS09780;product=efflux RND transporter permease subunit;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	560126	560722	.	-	.	ID=gene-RAF_RS10335;Name=RAF_RS10335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10335
NC_012633.1	Protein Homology	CDS	560126	560722	.	-	0	ID=cds-WP_083762099.1;Parent=gene-RAF_RS10335;Dbxref=GenBank:WP_083762099.1;Name=WP_083762099.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419798.1;locus_tag=RAF_RS10335;product=efflux RND transporter permease subunit;protein_id=WP_083762099.1;transl_table=11
NC_012633.1	RefSeq	gene	560803	561129	.	-	.	ID=gene-RAF_RS10340;Name=RAF_RS10340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10340
NC_012633.1	Protein Homology	CDS	560803	561129	.	-	0	ID=cds-WP_327203444.1;Parent=gene-RAF_RS10340;Dbxref=GenBank:WP_327203444.1;Name=WP_327203444.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: protein motif:HMM:NF013069.5;locus_tag=RAF_RS10340;product=efflux RND transporter permease subunit;protein_id=WP_327203444.1;transl_table=11
NC_012633.1	RefSeq	gene	561069	561320	.	-	.	ID=gene-RAF_RS10345;Name=RAF_RS10345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10345
NC_012633.1	Protein Homology	CDS	561069	561320	.	-	0	ID=cds-WP_268738935.1;Parent=gene-RAF_RS10345;Dbxref=GenBank:WP_268738935.1;Name=WP_268738935.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: protein motif:HMM:NF013069.5;locus_tag=RAF_RS10345;product=efflux RND transporter permease subunit;protein_id=WP_268738935.1;transl_table=11
NC_012633.1	RefSeq	gene	561413	561631	.	-	.	ID=gene-RAF_RS10350;Name=RAF_RS10350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10350
NC_012633.1	Protein Homology	CDS	561413	561631	.	-	0	ID=cds-WP_410524336.1;Parent=gene-RAF_RS10350;Dbxref=GenBank:WP_410524336.1;Name=WP_410524336.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770159.1;locus_tag=RAF_RS10350;product=efflux RND transporter permease subunit;protein_id=WP_410524336.1;transl_table=11
NC_012633.1	RefSeq	gene	561932	562129	.	-	.	ID=gene-RAF_RS09790;Name=RAF_RS09790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09790
NC_012633.1	GeneMarkS-2+	CDS	561932	562129	.	-	0	ID=cds-WP_041471853.1;Parent=gene-RAF_RS09790;Dbxref=GenBank:WP_041471853.1;Name=WP_041471853.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09790;product=hypothetical protein;protein_id=WP_041471853.1;transl_table=11
NC_012633.1	RefSeq	gene	562154	562585	.	-	.	ID=gene-RAF_RS07075;Name=RAF_RS07075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07075;old_locus_tag=RAF_ORF0532
NC_012633.1	Protein Homology	CDS	562154	562585	.	-	0	ID=cds-WP_234943928.1;Parent=gene-RAF_RS07075;Dbxref=GenBank:WP_234943928.1;Name=WP_234943928.1;Ontology_term=GO:0055085,GO:0022857,GO:0042802,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA,identical protein binding|0042802||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: protein motif:HMM:TIGR01730.1;locus_tag=RAF_RS07075;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_234943928.1;transl_table=11
NC_012633.1	RefSeq	gene	562807	562983	.	-	.	ID=gene-RAF_RS02950;Name=RAF_RS02950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02950
NC_012633.1	GeneMarkS-2+	CDS	562807	562983	.	-	0	ID=cds-WP_041471854.1;Parent=gene-RAF_RS02950;Dbxref=GenBank:WP_041471854.1;Name=WP_041471854.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS02950;product=hypothetical protein;protein_id=WP_041471854.1;transl_table=11
NC_012633.1	RefSeq	gene	563050	563427	.	-	.	ID=gene-RAF_RS02955;Name=RAF_RS02955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02955
NC_012633.1	Protein Homology	CDS	563050	563427	.	-	0	ID=cds-WP_041471855.1;Parent=gene-RAF_RS02955;Dbxref=GenBank:WP_041471855.1;Name=WP_041471855.1;Ontology_term=GO:0055085,GO:0015562;gbkey=CDS;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945661.1;locus_tag=RAF_RS02955;product=TolC family protein;protein_id=WP_041471855.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	563428	563700	.	-	.	ID=gene-RAF_RS10355;Name=RAF_RS10355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10355;partial=true;pseudo=true;start_range=.,563428
NC_012633.1	Protein Homology	CDS	563428	563700	.	-	0	ID=cds-RAF_RS10355;Parent=gene-RAF_RS10355;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0055085,GO:0015562;gbkey=CDS;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: protein motif:HMM:NF014385.5;locus_tag=RAF_RS10355;partial=true;product=TolC family protein;pseudo=true;start_range=.,563428;transl_table=11
NC_012633.1	RefSeq	gene	563697	563939	.	-	.	ID=gene-RAF_RS10360;Name=RAF_RS10360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10360
NC_012633.1	Protein Homology	CDS	563697	563939	.	-	0	ID=cds-WP_041471856.1;Parent=gene-RAF_RS10360;Dbxref=GenBank:WP_041471856.1;Name=WP_041471856.1;Ontology_term=GO:0055085,GO:0015562;gbkey=CDS;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419801.1;locus_tag=RAF_RS10360;product=TolC family protein;protein_id=WP_041471856.1;transl_table=11
NC_012633.1	RefSeq	gene	564356	565372	.	-	.	ID=gene-RAF_RS02965;Name=RAF_RS02965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02965;old_locus_tag=RAF_ORF0536
NC_012633.1	Protein Homology	CDS	564356	565372	.	-	0	ID=cds-WP_012719669.1;Parent=gene-RAF_RS02965;Dbxref=GenBank:WP_012719669.1;Name=WP_012719669.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443033.1;locus_tag=RAF_RS02965;product=glycosyltransferase family 4 protein;protein_id=WP_012719669.1;transl_table=11
NC_012633.1	RefSeq	gene	565372	565656	.	-	.	ID=gene-RAF_RS02970;Name=RAF_RS02970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02970;old_locus_tag=RAF_ORF0537
NC_012633.1	Protein Homology	CDS	565372	565656	.	-	0	ID=cds-WP_012719670.1;Parent=gene-RAF_RS02970;Dbxref=GenBank:WP_012719670.1;Name=WP_012719670.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977211.1;locus_tag=RAF_RS02970;product=hypothetical protein;protein_id=WP_012719670.1;transl_table=11
NC_012633.1	RefSeq	gene	565696	565911	.	-	.	ID=gene-RAF_RS02975;Name=RAF_RS02975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02975;old_locus_tag=RAF_ORF0538
NC_012633.1	Protein Homology	CDS	565696	565911	.	-	0	ID=cds-WP_234943929.1;Parent=gene-RAF_RS02975;Dbxref=GenBank:WP_234943929.1;Name=WP_234943929.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362337.1;locus_tag=RAF_RS02975;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_234943929.1;transl_table=11
NC_012633.1	RefSeq	gene	565808	566086	.	-	.	ID=gene-RAF_RS10365;Name=RAF_RS10365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10365
NC_012633.1	Protein Homology	CDS	565808	566086	.	-	0	ID=cds-WP_327203446.1;Parent=gene-RAF_RS10365;Dbxref=GenBank:WP_327203446.1;Name=WP_327203446.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024194.5;locus_tag=RAF_RS10365;product=PD-(D/E)XK nuclease family transposase;protein_id=WP_327203446.1;transl_table=11
NC_012633.1	RefSeq	gene	566062	566256	.	-	.	ID=gene-RAF_RS10370;Name=RAF_RS10370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10370;old_locus_tag=RAF_ORF0539
NC_012633.1	Protein Homology	CDS	566062	566256	.	-	0	ID=cds-WP_012719672.1;Parent=gene-RAF_RS10370;Dbxref=GenBank:WP_012719672.1;Name=WP_012719672.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024194.5;locus_tag=RAF_RS10370;product=PD-(D/E)XK nuclease family transposase;protein_id=WP_012719672.1;transl_table=11
NC_012633.1	RefSeq	gene	566345	567157	.	+	.	ID=gene-RAF_RS02985;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=RAF_RS02985;old_locus_tag=RAF_ORF0540
NC_012633.1	Protein Homology	CDS	566345	567157	.	+	0	ID=cds-WP_012719673.1;Parent=gene-RAF_RS02985;Dbxref=GenBank:WP_012719673.1;Name=WP_012719673.1;Ontology_term=GO:0009089,GO:0008837;gbkey=CDS;gene=dapF;go_function=diaminopimelate epimerase activity|0008837||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190862.1;locus_tag=RAF_RS02985;product=diaminopimelate epimerase;protein_id=WP_012719673.1;transl_table=11
NC_012633.1	RefSeq	gene	567132	568397	.	+	.	ID=gene-RAF_RS02990;Name=mtaB;gbkey=Gene;gene=mtaB;gene_biotype=protein_coding;locus_tag=RAF_RS02990;old_locus_tag=RAF_ORF0541
NC_012633.1	Protein Homology	CDS	567132	568397	.	+	0	ID=cds-WP_012719674.1;Parent=gene-RAF_RS02990;Dbxref=GenBank:WP_012719674.1;Name=WP_012719674.1;Ontology_term=GO:0006400,GO:0051539,GO:0061712,GO:1904047;gbkey=CDS;gene=mtaB;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase|0061712||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443037.1;locus_tag=RAF_RS02990;product=tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB;protein_id=WP_012719674.1;transl_table=11
NC_012633.1	RefSeq	gene	568638	569687	.	+	.	ID=gene-RAF_RS02995;Name=pheS;gbkey=Gene;gene=pheS;gene_biotype=protein_coding;locus_tag=RAF_RS02995;old_locus_tag=RAF_ORF0542
NC_012633.1	Protein Homology	CDS	568638	569687	.	+	0	ID=cds-WP_012719675.1;Parent=gene-RAF_RS02995;Dbxref=GenBank:WP_012719675.1;Name=WP_012719675.1;Ontology_term=GO:0006432,GO:0000166,GO:0004826,GO:0005524,GO:0005737;gbkey=CDS;gene=pheS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,phenylalanine-tRNA ligase activity|0004826||IEA,ATP binding|0005524||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190864.1;locus_tag=RAF_RS02995;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_012719675.1;transl_table=11
NC_012633.1	RefSeq	gene	569684	572140	.	+	.	ID=gene-RAF_RS03000;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=RAF_RS03000;old_locus_tag=RAF_ORF0543
NC_012633.1	Protein Homology	CDS	569684	572140	.	+	0	ID=cds-WP_012719676.1;Parent=gene-RAF_RS03000;Dbxref=GenBank:WP_012719676.1;Name=WP_012719676.1;Ontology_term=GO:0006432,GO:0000287,GO:0004826,GO:0005524;gbkey=CDS;gene=pheT;go_function=magnesium ion binding|0000287||IEA,phenylalanine-tRNA ligase activity|0004826||IEA,ATP binding|0005524||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190865.1;locus_tag=RAF_RS03000;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_012719676.1;transl_table=11
NC_012633.1	RefSeq	gene	572145	573284	.	+	.	ID=gene-RAF_RS03005;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=RAF_RS03005;old_locus_tag=RAF_ORF0544
NC_012633.1	Protein Homology	CDS	572145	573284	.	+	0	ID=cds-WP_012719677.1;Parent=gene-RAF_RS03005;Dbxref=GenBank:WP_012719677.1;Name=WP_012719677.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0009360;gbkey=CDS;gene=dnaN;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190866.1;locus_tag=RAF_RS03005;product=DNA polymerase III subunit beta;protein_id=WP_012719677.1;transl_table=11
NC_012633.1	RefSeq	gene	573290	573412	.	+	.	ID=gene-RAF_RS09805;Name=RAF_RS09805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09805
NC_012633.1	Protein Homology	CDS	573290	573412	.	+	0	ID=cds-WP_041471858.1;Parent=gene-RAF_RS09805;Dbxref=GenBank:WP_041471858.1;Name=WP_041471858.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019481.5;locus_tag=RAF_RS09805;product=DUF1653 domain-containing protein;protein_id=WP_041471858.1;transl_table=11
NC_012633.1	RefSeq	gene	573414	573482	.	+	.	ID=gene-RAF_RS10375;Name=RAF_RS10375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10375
NC_012633.1	Protein Homology	CDS	573414	573482	.	+	0	ID=cds-WP_231839134.1;Parent=gene-RAF_RS10375;Dbxref=GenBank:WP_231839134.1;Name=WP_231839134.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019481.5;locus_tag=RAF_RS10375;product=hypothetical protein;protein_id=WP_231839134.1;transl_table=11
NC_012633.1	RefSeq	gene	573645	574148	.	+	.	ID=gene-RAF_RS03015;Name=RAF_RS03015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03015;old_locus_tag=RAF_ORF0545
NC_012633.1	Protein Homology	CDS	573645	574148	.	+	0	ID=cds-WP_004995768.1;Parent=gene-RAF_RS03015;Dbxref=GenBank:WP_004995768.1;Name=WP_004995768.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150777.1;locus_tag=RAF_RS03015;product=DUF3576 domain-containing protein;protein_id=WP_004995768.1;transl_table=11
NC_012633.1	RefSeq	gene	574277	576784	.	+	.	ID=gene-RAF_RS03020;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=RAF_RS03020;old_locus_tag=RAF_ORF0546
NC_012633.1	Protein Homology	CDS	574277	576784	.	+	0	ID=cds-WP_012719678.1;Parent=gene-RAF_RS03020;Dbxref=GenBank:WP_012719678.1;Name=WP_012719678.1;Ontology_term=GO:0006429,GO:0000166,GO:0004823,GO:0005524;gbkey=CDS;gene=leuS;go_function=nucleotide binding|0000166||IEA,leucine-tRNA ligase activity|0004823||IEA,ATP binding|0005524||IEA;go_process=leucyl-tRNA aminoacylation|0006429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599464.1;locus_tag=RAF_RS03020;product=leucine--tRNA ligase;protein_id=WP_012719678.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	576781	576877	.	-	.	ID=gene-RAF_RS10570;Name=RAF_RS10570;end_range=576877,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10570;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	576781	576877	.	-	0	ID=cds-RAF_RS10570;Parent=gene-RAF_RS10570;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=576877,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012262316.1;locus_tag=RAF_RS10570;partial=true;product=palindromic element RPE5 domain-containing protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	577835	578446	.	-	.	ID=gene-RAF_RS03025;Name=RAF_RS03025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03025;old_locus_tag=RAF_ORF0547
NC_012633.1	Protein Homology	CDS	577835	578446	.	-	0	ID=cds-WP_004995765.1;Parent=gene-RAF_RS03025;Dbxref=GenBank:WP_004995765.1;Name=WP_004995765.1;Ontology_term=GO:0042780,GO:0003676,GO:0008408,GO:0033890;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA,ribonuclease D activity|0033890||IEA;go_process=tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392207.1;locus_tag=RAF_RS03025;product=ribonuclease D;protein_id=WP_004995765.1;transl_table=11
NC_012633.1	RefSeq	gene	578597	578902	.	-	.	ID=gene-RAF_RS03030;Name=RAF_RS03030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03030;old_locus_tag=RAF_ORF0548
NC_012633.1	Protein Homology	CDS	578597	578902	.	-	0	ID=cds-WP_004995762.1;Parent=gene-RAF_RS03030;Dbxref=GenBank:WP_004995762.1;Name=WP_004995762.1;Ontology_term=GO:0051301;gbkey=CDS;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150781.1;locus_tag=RAF_RS03030;product=FtsB family cell division protein;protein_id=WP_004995762.1;transl_table=11
NC_012633.1	RefSeq	gene	578899	579591	.	-	.	ID=gene-RAF_RS03035;Name=RAF_RS03035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03035;old_locus_tag=RAF_ORF0549
NC_012633.1	Protein Homology	CDS	578899	579591	.	-	0	ID=cds-WP_012719679.1;Parent=gene-RAF_RS03035;Dbxref=GenBank:WP_012719679.1;Name=WP_012719679.1;Ontology_term=GO:0016024,GO:0004605;gbkey=CDS;go_function=phosphatidate cytidylyltransferase activity|0004605||IEA;go_process=CDP-diacylglycerol biosynthetic process|0016024||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443045.1;locus_tag=RAF_RS03035;product=phosphatidate cytidylyltransferase;protein_id=WP_012719679.1;transl_table=11
NC_012633.1	RefSeq	gene	579551	580258	.	-	.	ID=gene-RAF_RS03040;Name=uppS;gbkey=Gene;gene=uppS;gene_biotype=protein_coding;locus_tag=RAF_RS03040;old_locus_tag=RAF_ORF0550
NC_012633.1	Protein Homology	CDS	579551	580258	.	-	0	ID=cds-WP_010977222.1;Parent=gene-RAF_RS03040;Dbxref=GenBank:WP_010977222.1;Name=WP_010977222.1;Ontology_term=GO:0009252,GO:0005737;gbkey=CDS;gene=uppS;go_component=cytoplasm|0005737||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270986.1;locus_tag=RAF_RS03040;product=polyprenyl diphosphate synthase;protein_id=WP_010977222.1;transl_table=11
NC_012633.1	RefSeq	gene	580404	581834	.	-	.	ID=gene-RAF_RS03045;Name=RAF_RS03045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03045;old_locus_tag=RAF_ORF0551
NC_012633.1	Protein Homology	CDS	580404	581834	.	-	0	ID=cds-WP_200858186.1;Parent=gene-RAF_RS03045;Dbxref=GenBank:WP_200858186.1;Name=WP_200858186.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443047.1;locus_tag=RAF_RS03045;product=palindromic element RPE3 domain-containing protein;protein_id=WP_200858186.1;transl_table=11
NC_012633.1	RefSeq	gene	581818	582498	.	-	.	ID=gene-RAF_RS03050;Name=RAF_RS03050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03050;old_locus_tag=RAF_ORF0552
NC_012633.1	Protein Homology	CDS	581818	582498	.	-	0	ID=cds-WP_012719681.1;Parent=gene-RAF_RS03050;Dbxref=GenBank:WP_012719681.1;Name=WP_012719681.1;Ontology_term=GO:0000160,GO:0006355,GO:0000156,GO:0003677;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012148775.1;locus_tag=RAF_RS03050;product=response regulator transcription factor;protein_id=WP_012719681.1;transl_table=11
NC_012633.1	RefSeq	gene	582714	583586	.	+	.	ID=gene-RAF_RS03055;Name=RAF_RS03055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03055;old_locus_tag=RAF_ORF0553
NC_012633.1	Protein Homology	CDS	582714	583586	.	+	0	ID=cds-WP_012719682.1;Parent=gene-RAF_RS03055;Dbxref=GenBank:WP_012719682.1;Name=WP_012719682.1;Ontology_term=GO:0009081,GO:0004084;gbkey=CDS;go_function=branched-chain-amino-acid transaminase activity|0004084||IEA;go_process=branched-chain amino acid metabolic process|0009081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270989.1;locus_tag=RAF_RS03055;product=branched-chain amino acid transaminase;protein_id=WP_012719682.1;transl_table=11
NC_012633.1	RefSeq	gene	583772	584656	.	+	.	ID=gene-RAF_RS03060;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;locus_tag=RAF_RS03060;old_locus_tag=RAF_ORF0554
NC_012633.1	Protein Homology	CDS	583772	584656	.	+	0	ID=cds-WP_012719683.1;Parent=gene-RAF_RS03060;Dbxref=GenBank:WP_012719683.1;Name=WP_012719683.1;Ontology_term=GO:0009089,GO:0008840;gbkey=CDS;gene=dapA;go_function=4-hydroxy-tetrahydrodipicolinate synthase activity|0008840||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597637.1;locus_tag=RAF_RS03060;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_012719683.1;transl_table=11
NC_012633.1	RefSeq	gene	584653	585111	.	+	.	ID=gene-RAF_RS03065;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=RAF_RS03065;old_locus_tag=RAF_ORF0555
NC_012633.1	Protein Homology	CDS	584653	585111	.	+	0	ID=cds-WP_012719684.1;Parent=gene-RAF_RS03065;Dbxref=GenBank:WP_012719684.1;Name=WP_012719684.1;Ontology_term=GO:0003723;gbkey=CDS;gene=smpB;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012148772.1;locus_tag=RAF_RS03065;product=SsrA-binding protein SmpB;protein_id=WP_012719684.1;transl_table=11
NC_012633.1	RefSeq	gene	585244	586035	.	+	.	ID=gene-RAF_RS03070;Name=RAF_RS03070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03070;old_locus_tag=RAF_ORF0556
NC_012633.1	Protein Homology	CDS	585244	586035	.	+	0	ID=cds-WP_012719685.1;Parent=gene-RAF_RS03070;Dbxref=GenBank:WP_012719685.1;Name=WP_012719685.1;Ontology_term=GO:0015036;gbkey=CDS;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945669.1;locus_tag=RAF_RS03070;product=DsbA family protein;protein_id=WP_012719685.1;transl_table=11
NC_012633.1	RefSeq	gene	586269	587144	.	-	.	ID=gene-RAF_RS03075;Name=sucD;gbkey=Gene;gene=sucD;gene_biotype=protein_coding;locus_tag=RAF_RS03075;old_locus_tag=RAF_ORF0557
NC_012633.1	Protein Homology	CDS	586269	587144	.	-	0	ID=cds-WP_012719686.1;Parent=gene-RAF_RS03075;Dbxref=GenBank:WP_012719686.1;Name=WP_012719686.1;Ontology_term=GO:0003824;gbkey=CDS;gene=sucD;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477883.1;locus_tag=RAF_RS03075;product=succinate--CoA ligase subunit alpha;protein_id=WP_012719686.1;transl_table=11
NC_012633.1	RefSeq	gene	587320	588480	.	-	.	ID=gene-RAF_RS03080;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=RAF_RS03080;old_locus_tag=RAF_ORF0558
NC_012633.1	Protein Homology	CDS	587320	588480	.	-	0	ID=cds-WP_012719687.1;Parent=gene-RAF_RS03080;Dbxref=GenBank:WP_012719687.1;Name=WP_012719687.1;Ontology_term=GO:0006099,GO:0003824,GO:0005524,GO:0046872;gbkey=CDS;gene=sucC;go_function=catalytic activity|0003824||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443053.1;locus_tag=RAF_RS03080;product=ADP-forming succinate--CoA ligase subunit beta;protein_id=WP_012719687.1;transl_table=11
NC_012633.1	RefSeq	gene	588513	588902	.	-	.	ID=gene-RAF_RS03085;Name=RAF_RS03085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03085;old_locus_tag=RAF_ORF0559
NC_012633.1	Protein Homology	CDS	588513	588902	.	-	0	ID=cds-WP_041471859.1;Parent=gene-RAF_RS03085;Dbxref=GenBank:WP_041471859.1;Name=WP_041471859.1;Ontology_term=GO:0004540;gbkey=CDS;go_function=RNA nuclease activity|0004540||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945671.1;locus_tag=RAF_RS03085;product=PIN domain-containing protein;protein_id=WP_041471859.1;transl_table=11
NC_012633.1	RefSeq	gene	588889	589140	.	-	.	ID=gene-RAF_RS03090;Name=RAF_RS03090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03090;old_locus_tag=RAF_ORF0560
NC_012633.1	Protein Homology	CDS	588889	589140	.	-	0	ID=cds-WP_012719689.1;Parent=gene-RAF_RS03090;Dbxref=GenBank:WP_012719689.1;Name=WP_012719689.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443055.1;locus_tag=RAF_RS03090;product=AbrB/MazE/SpoVT family DNA-binding domain-containing protein;protein_id=WP_012719689.1;transl_table=11
NC_012633.1	RefSeq	gene	589301	589459	.	-	.	ID=gene-RAF_RS09810;Name=RAF_RS09810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09810
NC_012633.1	Protein Homology	CDS	589301	589459	.	-	0	ID=cds-WP_234943930.1;Parent=gene-RAF_RS09810;Dbxref=GenBank:WP_234943930.1;Name=WP_234943930.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150794.1;locus_tag=RAF_RS09810;product=cytochrome B;protein_id=WP_234943930.1;transl_table=11
NC_012633.1	RefSeq	gene	589459	589755	.	-	.	ID=gene-RAF_RS03100;Name=RAF_RS03100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03100;old_locus_tag=RAF_ORF0561
NC_012633.1	Protein Homology	CDS	589459	589755	.	-	0	ID=cds-WP_041472018.1;Parent=gene-RAF_RS03100;Dbxref=GenBank:WP_041472018.1;Name=WP_041472018.1;Ontology_term=GO:0022904,GO:0009055,GO:0020037,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410684.1;locus_tag=RAF_RS03100;product=cytochrome b;protein_id=WP_041472018.1;transl_table=11
NC_012633.1	RefSeq	gene	589922	591952	.	-	.	ID=gene-RAF_RS03105;Name=RAF_RS03105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03105;old_locus_tag=RAF_ORF0563
NC_012633.1	Protein Homology	CDS	589922	591952	.	-	0	ID=cds-WP_012719690.1;Parent=gene-RAF_RS03105;Dbxref=GenBank:WP_012719690.1;Name=WP_012719690.1;Ontology_term=GO:0008233;gbkey=CDS;go_function=peptidase activity|0008233||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995742.1;locus_tag=RAF_RS03105;product=S9 family peptidase;protein_id=WP_012719690.1;transl_table=11
NC_012633.1	RefSeq	gene	592040	592675	.	-	.	ID=gene-RAF_RS03110;Name=RAF_RS03110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03110;old_locus_tag=RAF_ORF0564
NC_012633.1	Protein Homology	CDS	592040	592675	.	-	0	ID=cds-WP_012719691.1;Parent=gene-RAF_RS03110;Dbxref=GenBank:WP_012719691.1;Name=WP_012719691.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599471.1;locus_tag=RAF_RS03110;product=Tim44 domain-containing protein;protein_id=WP_012719691.1;transl_table=11
NC_012633.1	RefSeq	gene	593134	593643	.	-	.	ID=gene-RAF_RS09815;Name=RAF_RS09815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09815;old_locus_tag=RAF_ORF0565
NC_012633.1	GeneMarkS-2+	CDS	593134	593643	.	-	0	ID=cds-WP_234943932.1;Parent=gene-RAF_RS09815;Dbxref=GenBank:WP_234943932.1;Name=WP_234943932.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09815;product=hypothetical protein;protein_id=WP_234943932.1;transl_table=11
NC_012633.1	RefSeq	gene	593701	593928	.	-	.	ID=gene-RAF_RS10575;Name=RAF_RS10575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10575;old_locus_tag=RAF_ORF0566
NC_012633.1	Protein Homology	CDS	593701	593928	.	-	0	ID=cds-WP_012719693.1;Parent=gene-RAF_RS10575;Dbxref=GenBank:WP_012719693.1;Name=WP_012719693.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150798.1;locus_tag=RAF_RS10575;product=acyltransferase family protein;protein_id=WP_012719693.1;transl_table=11
NC_012633.1	RefSeq	gene	594105	594467	.	-	.	ID=gene-RAF_RS03125;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=RAF_RS03125;old_locus_tag=RAF_ORF0567
NC_012633.1	Protein Homology	CDS	594105	594467	.	-	0	ID=cds-WP_012719694.1;Parent=gene-RAF_RS03125;Dbxref=GenBank:WP_012719694.1;Name=WP_012719694.1;gbkey=CDS;gene=rbfA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443060.1;locus_tag=RAF_RS03125;product=30S ribosome-binding factor RbfA;protein_id=WP_012719694.1;transl_table=11
NC_012633.1	RefSeq	gene	594464	594898	.	-	.	ID=gene-RAF_RS03130;Name=RAF_RS03130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03130;old_locus_tag=RAF_ORF0568
NC_012633.1	Protein Homology	CDS	594464	594898	.	-	0	ID=cds-WP_012719695.1;Parent=gene-RAF_RS03130;Dbxref=GenBank:WP_012719695.1;Name=WP_012719695.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719695.1;locus_tag=RAF_RS03130;product=YqaA family protein;protein_id=WP_012719695.1;transl_table=11
NC_012633.1	RefSeq	gene	595041	595562	.	+	.	ID=gene-RAF_RS03135;Name=RAF_RS03135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03135;old_locus_tag=RAF_ORF0569
NC_012633.1	Protein Homology	CDS	595041	595562	.	+	0	ID=cds-WP_012719696.1;Parent=gene-RAF_RS03135;Dbxref=GenBank:WP_012719696.1;Name=WP_012719696.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443061.1;locus_tag=RAF_RS03135;product=RDD family protein;protein_id=WP_012719696.1;transl_table=11
NC_012633.1	RefSeq	gene	595710	596315	.	+	.	ID=gene-RAF_RS03140;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=RAF_RS03140;old_locus_tag=RAF_ORF0570
NC_012633.1	Protein Homology	CDS	595710	596315	.	+	0	ID=cds-WP_004995735.1;Parent=gene-RAF_RS03140;Dbxref=GenBank:WP_004995735.1;Name=WP_004995735.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0046872;gbkey=CDS;gene=recR;go_function=DNA binding|0003677||IEA,metal ion binding|0046872||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041404668.1;locus_tag=RAF_RS03140;product=recombination mediator RecR;protein_id=WP_004995735.1;transl_table=11
NC_012633.1	RefSeq	gene	596498	596629	.	-	.	ID=gene-RAF_RS10380;Name=RAF_RS10380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10380
NC_012633.1	Protein Homology	CDS	596498	596629	.	-	0	ID=cds-WP_016728210.1;Parent=gene-RAF_RS10380;Dbxref=GenBank:WP_016728210.1;Name=WP_016728210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410690.1;locus_tag=RAF_RS10380;product=hypothetical protein;protein_id=WP_016728210.1;transl_table=11
NC_012633.1	RefSeq	gene	596913	597680	.	-	.	ID=gene-RAF_RS03145;Name=RAF_RS03145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03145;old_locus_tag=RAF_ORF0571
NC_012633.1	Protein Homology	CDS	596913	597680	.	-	0	ID=cds-WP_012719697.1;Parent=gene-RAF_RS03145;Dbxref=GenBank:WP_012719697.1;Name=WP_012719697.1;Ontology_term=GO:0006741,GO:0019674,GO:0003951;gbkey=CDS;go_function=NAD+ kinase activity|0003951||IEA;go_process=NADP biosynthetic process|0006741||IEA,NAD metabolic process|0019674||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926245.1;locus_tag=RAF_RS03145;product=NAD kinase;protein_id=WP_012719697.1;transl_table=11
NC_012633.1	RefSeq	gene	597764	599446	.	+	.	ID=gene-RAF_RS03150;Name=RAF_RS03150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03150;old_locus_tag=RAF_ORF0572
NC_012633.1	Protein Homology	CDS	597764	599446	.	+	0	ID=cds-WP_012719698.1;Parent=gene-RAF_RS03150;Dbxref=GenBank:WP_012719698.1;Name=WP_012719698.1;Ontology_term=GO:0006364,GO:0006396,GO:0003723,GO:0004521,GO:0004534,GO:0008270,GO:0046872;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA endonuclease activity|0004521||IEA,5'-3' RNA exonuclease activity|0004534||IEA,zinc ion binding|0008270||IEA,metal ion binding|0046872||IEA;go_process=rRNA processing|0006364||IEA,RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977243.1;locus_tag=RAF_RS03150;product=ribonuclease J;protein_id=WP_012719698.1;transl_table=11
NC_012633.1	RefSeq	gene	599586	600563	.	+	.	ID=gene-RAF_RS03155;Name=RAF_RS03155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03155;old_locus_tag=RAF_ORF0573
NC_012633.1	Protein Homology	CDS	599586	600563	.	+	0	ID=cds-WP_012719699.1;Parent=gene-RAF_RS03155;Dbxref=GenBank:WP_012719699.1;Name=WP_012719699.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719699.1;locus_tag=RAF_RS03155;product=NAD(P)H-dependent glycerol-3-phosphate dehydrogenase;protein_id=WP_012719699.1;transl_table=11
NC_012633.1	RefSeq	gene	600788	601717	.	+	.	ID=gene-RAF_RS03160;Name=RAF_RS03160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03160;old_locus_tag=RAF_ORF0574
NC_012633.1	Protein Homology	CDS	600788	601717	.	+	0	ID=cds-WP_012719700.1;Parent=gene-RAF_RS03160;Dbxref=GenBank:WP_012719700.1;Name=WP_012719700.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016916771.1;locus_tag=RAF_RS03160;product=AEC family transporter;protein_id=WP_012719700.1;transl_table=11
NC_012633.1	RefSeq	gene	601786	602658	.	+	.	ID=gene-RAF_RS03165;Name=RAF_RS03165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03165;old_locus_tag=RAF_ORF0575
NC_012633.1	Protein Homology	CDS	601786	602658	.	+	0	ID=cds-WP_012719701.1;Parent=gene-RAF_RS03165;Dbxref=GenBank:WP_012719701.1;Name=WP_012719701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442961.1;locus_tag=RAF_RS03165;product=alpha/beta fold hydrolase;protein_id=WP_012719701.1;transl_table=11
NC_012633.1	RefSeq	gene	602860	603792	.	+	.	ID=gene-RAF_RS03170;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;locus_tag=RAF_RS03170;old_locus_tag=RAF_ORF0576
NC_012633.1	Protein Homology	CDS	602860	603792	.	+	0	ID=cds-WP_012719702.1;Parent=gene-RAF_RS03170;Dbxref=GenBank:WP_012719702.1;Name=WP_012719702.1;Ontology_term=GO:0019430,GO:0004791,GO:0071949,GO:0005737;gbkey=CDS;gene=trxB;go_component=cytoplasm|0005737||IEA;go_function=thioredoxin-disulfide reductase (NADPH) activity|0004791||IEA,FAD binding|0071949||IEA;go_process=removal of superoxide radicals|0019430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442962.1;locus_tag=RAF_RS03170;product=thioredoxin-disulfide reductase;protein_id=WP_012719702.1;transl_table=11
NC_012633.1	RefSeq	gene	604012	604308	.	+	.	ID=gene-RAF_RS03175;Name=RAF_RS03175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03175;old_locus_tag=RAF_ORF0577
NC_012633.1	Protein Homology	CDS	604012	604308	.	+	0	ID=cds-WP_004995724.1;Parent=gene-RAF_RS03175;Dbxref=GenBank:WP_004995724.1;Name=WP_004995724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995724.1;locus_tag=RAF_RS03175;product=hypothetical protein;protein_id=WP_004995724.1;transl_table=11
NC_012633.1	RefSeq	gene	604370	604597	.	+	.	ID=gene-RAF_RS03180;Name=RAF_RS03180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03180
NC_012633.1	Protein Homology	CDS	604370	604597	.	+	0	ID=cds-WP_041471860.1;Parent=gene-RAF_RS03180;Dbxref=GenBank:WP_041471860.1;Name=WP_041471860.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016916773.1;locus_tag=RAF_RS03180;product=hypothetical protein;protein_id=WP_041471860.1;transl_table=11
NC_012633.1	RefSeq	gene	604629	604838	.	+	.	ID=gene-RAF_RS03185;Name=RAF_RS03185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03185
NC_012633.1	Protein Homology	CDS	604629	604838	.	+	0	ID=cds-WP_004995723.1;Parent=gene-RAF_RS03185;Dbxref=GenBank:WP_004995723.1;Name=WP_004995723.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995723.1;locus_tag=RAF_RS03185;product=hypothetical protein;protein_id=WP_004995723.1;transl_table=11
NC_012633.1	RefSeq	gene	604963	606390	.	+	.	ID=gene-RAF_RS03190;Name=RAF_RS03190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03190;old_locus_tag=RAF_ORF0578
NC_012633.1	Protein Homology	CDS	604963	606390	.	+	0	ID=cds-WP_012719703.1;Parent=gene-RAF_RS03190;Dbxref=GenBank:WP_012719703.1;Name=WP_012719703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977250.1;locus_tag=RAF_RS03190;product=NAD-dependent succinate-semialdehyde dehydrogenase;protein_id=WP_012719703.1;transl_table=11
NC_012633.1	RefSeq	gene	606544	606756	.	+	.	ID=gene-RAF_RS09820;Name=RAF_RS09820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09820
NC_012633.1	Protein Homology	CDS	606544	606756	.	+	0	ID=cds-WP_041471861.1;Parent=gene-RAF_RS09820;Dbxref=GenBank:WP_041471861.1;Name=WP_041471861.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977251.1;locus_tag=RAF_RS09820;product=hypothetical protein;protein_id=WP_041471861.1;transl_table=11
NC_012633.1	RefSeq	gene	606765	606893	.	+	.	ID=gene-RAF_RS10385;Name=RAF_RS10385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10385
NC_012633.1	GeneMarkS-2+	CDS	606765	606893	.	+	0	ID=cds-WP_255374147.1;Parent=gene-RAF_RS10385;Dbxref=GenBank:WP_255374147.1;Name=WP_255374147.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10385;product=hypothetical protein;protein_id=WP_255374147.1;transl_table=11
NC_012633.1	RefSeq	gene	606886	607731	.	+	.	ID=gene-RAF_RS03200;Name=RAF_RS03200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03200;old_locus_tag=RAF_ORF0579
NC_012633.1	Protein Homology	CDS	606886	607731	.	+	0	ID=cds-WP_012719704.1;Parent=gene-RAF_RS03200;Dbxref=GenBank:WP_012719704.1;Name=WP_012719704.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150816.1;locus_tag=RAF_RS03200;product=glycosyltransferase;protein_id=WP_012719704.1;transl_table=11
NC_012633.1	RefSeq	gene	607809	609770	.	+	.	ID=gene-RAF_RS03205;Name=pcrA;gbkey=Gene;gene=pcrA;gene_biotype=protein_coding;locus_tag=RAF_RS03205;old_locus_tag=RAF_ORF0580
NC_012633.1	Protein Homology	CDS	607809	609770	.	+	0	ID=cds-WP_012719705.1;Parent=gene-RAF_RS03205;Dbxref=GenBank:WP_012719705.1;Name=WP_012719705.1;Ontology_term=GO:0006268,GO:0006281,GO:0003678,GO:0005737;gbkey=CDS;gene=pcrA;go_component=cytoplasm|0005737||IEA;go_function=DNA helicase activity|0003678||IEA;go_process=DNA unwinding involved in DNA replication|0006268||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770129.1;locus_tag=RAF_RS03205;product=DNA helicase PcrA;protein_id=WP_012719705.1;transl_table=11
NC_012633.1	RefSeq	gene	609836	610345	.	+	.	ID=gene-RAF_RS03210;Name=RAF_RS03210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03210;old_locus_tag=RAF_ORF0581
NC_012633.1	GeneMarkS-2+	CDS	609836	610345	.	+	0	ID=cds-WP_012719706.1;Parent=gene-RAF_RS03210;Dbxref=GenBank:WP_012719706.1;Name=WP_012719706.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS03210;product=hypothetical protein;protein_id=WP_012719706.1;transl_table=11
NC_012633.1	RefSeq	gene	610547	610708	.	+	.	ID=gene-RAF_RS08645;Name=RAF_RS08645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08645
NC_012633.1	Protein Homology	CDS	610547	610708	.	+	0	ID=cds-WP_012736381.1;Parent=gene-RAF_RS08645;Dbxref=GenBank:WP_012736381.1;Name=WP_012736381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736381.1;locus_tag=RAF_RS08645;product=hypothetical protein;protein_id=WP_012736381.1;transl_table=11
NC_012633.1	RefSeq	gene	610795	612147	.	+	.	ID=gene-RAF_RS03215;Name=RAF_RS03215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03215;old_locus_tag=RAF_ORF0582
NC_012633.1	Protein Homology	CDS	610795	612147	.	+	0	ID=cds-WP_012719707.1;Parent=gene-RAF_RS03215;Dbxref=GenBank:WP_012719707.1;Name=WP_012719707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016916778.1;locus_tag=RAF_RS03215;product=hypothetical protein;protein_id=WP_012719707.1;transl_table=11
NC_012633.1	RefSeq	gene	612324	613355	.	-	.	ID=gene-RAF_RS03220;Name=RAF_RS03220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03220;old_locus_tag=RAF_ORF0583
NC_012633.1	Protein Homology	CDS	612324	613355	.	-	0	ID=cds-WP_012719708.1;Parent=gene-RAF_RS03220;Dbxref=GenBank:WP_012719708.1;Name=WP_012719708.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442969.1;locus_tag=RAF_RS03220;product=serine/threonine dehydratase;protein_id=WP_012719708.1;transl_table=11
NC_012633.1	RefSeq	gene	613441	615777	.	+	.	ID=gene-RAF_RS03225;Name=lon;gbkey=Gene;gene=lon;gene_biotype=protein_coding;locus_tag=RAF_RS03225;old_locus_tag=RAF_ORF0584
NC_012633.1	Protein Homology	CDS	613441	615777	.	+	0	ID=cds-WP_012719709.1;Parent=gene-RAF_RS03225;Dbxref=GenBank:WP_012719709.1;Name=WP_012719709.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0016887,GO:0043565;gbkey=CDS;gene=lon;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA,ATP hydrolysis activity|0016887||IEA,sequence-specific DNA binding|0043565||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830768.1;locus_tag=RAF_RS03225;product=endopeptidase La;protein_id=WP_012719709.1;transl_table=11
NC_012633.1	RefSeq	gene	616462	616689	.	+	.	ID=gene-RAF_RS03230;Name=RAF_RS03230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03230
NC_012633.1	Protein Homology	CDS	616462	616689	.	+	0	ID=cds-WP_004995713.1;Parent=gene-RAF_RS03230;Dbxref=GenBank:WP_004995713.1;Name=WP_004995713.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926253.1;locus_tag=RAF_RS03230;product=hypothetical protein;protein_id=WP_004995713.1;transl_table=11
NC_012633.1	RefSeq	gene	617283	617813	.	+	.	ID=gene-RAF_RS09310;Name=RAF_RS09310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09310;old_locus_tag=RAF_ORF0585
NC_012633.1	GeneMarkS-2+	CDS	617283	617813	.	+	0	ID=cds-WP_012719710.1;Parent=gene-RAF_RS09310;Dbxref=GenBank:WP_012719710.1;Name=WP_012719710.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09310;product=hypothetical protein;protein_id=WP_012719710.1;transl_table=11
NC_012633.1	RefSeq	gene	618135	618350	.	-	.	ID=gene-RAF_RS09035;Name=RAF_RS09035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09035
NC_012633.1	Protein Homology	CDS	618135	618350	.	-	0	ID=cds-WP_041471862.1;Parent=gene-RAF_RS09035;Dbxref=GenBank:WP_041471862.1;Name=WP_041471862.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926256.1;locus_tag=RAF_RS09035;product=hypothetical protein;protein_id=WP_041471862.1;transl_table=11
NC_012633.1	RefSeq	gene	618854	618930	.	-	.	ID=gene-RAF_RS03245;Name=RAF_RS03245;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS03245;old_locus_tag=RAF_RNA14
NC_012633.1	tRNAscan-SE	tRNA	618854	618930	.	-	.	ID=rna-RAF_RS03245;Parent=gene-RAF_RS03245;anticodon=(pos:complement(618894..618896));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS03245;product=tRNA-Asp
NC_012633.1	tRNAscan-SE	exon	618854	618930	.	-	.	ID=exon-RAF_RS03245-1;Parent=rna-RAF_RS03245;anticodon=(pos:complement(618894..618896));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS03245;product=tRNA-Asp
NC_012633.1	RefSeq	gene	619326	619634	.	+	.	ID=gene-RAF_RS03250;Name=RAF_RS03250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03250;old_locus_tag=RAF_ORF0587
NC_012633.1	Protein Homology	CDS	619326	619634	.	+	0	ID=cds-WP_012719712.1;Parent=gene-RAF_RS03250;Dbxref=GenBank:WP_012719712.1;Name=WP_012719712.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410707.1;locus_tag=RAF_RS03250;product=hypothetical protein;protein_id=WP_012719712.1;transl_table=11
NC_012633.1	RefSeq	gene	619751	620329	.	+	.	ID=gene-RAF_RS03255;Name=hpf;gbkey=Gene;gene=hpf;gene_biotype=protein_coding;locus_tag=RAF_RS03255;old_locus_tag=RAF_ORF0588
NC_012633.1	Protein Homology	CDS	619751	620329	.	+	0	ID=cds-WP_012150829.1;Parent=gene-RAF_RS03255;Dbxref=GenBank:WP_012150829.1;Name=WP_012150829.1;Ontology_term=GO:0045182,GO:0005840;gbkey=CDS;gene=hpf;go_component=ribosome|0005840||IEA;go_function=translation regulator activity|0045182||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442976.1;locus_tag=RAF_RS03255;product=ribosome hibernation-promoting factor%2C HPF/YfiA family;protein_id=WP_012150829.1;transl_table=11
NC_012633.1	RefSeq	gene	620329	620844	.	+	.	ID=gene-RAF_RS03260;Name=RAF_RS03260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03260;old_locus_tag=RAF_ORF0589
NC_012633.1	Protein Homology	CDS	620329	620844	.	+	0	ID=cds-WP_012719713.1;Parent=gene-RAF_RS03260;Dbxref=GenBank:WP_012719713.1;Name=WP_012719713.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273487.1;locus_tag=RAF_RS03260;product=gamma carbonic anhydrase family protein;protein_id=WP_012719713.1;transl_table=11
NC_012633.1	RefSeq	gene	620875	621741	.	-	.	ID=gene-RAF_RS03265;Name=folD;gbkey=Gene;gene=folD;gene_biotype=protein_coding;locus_tag=RAF_RS03265;old_locus_tag=RAF_ORF0590
NC_012633.1	Protein Homology	CDS	620875	621741	.	-	0	ID=cds-WP_004995703.1;Parent=gene-RAF_RS03265;Dbxref=GenBank:WP_004995703.1;Name=WP_004995703.1;gbkey=CDS;gene=folD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016916790.1;locus_tag=RAF_RS03265;product=bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD;protein_id=WP_004995703.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	621894	622900	.	-	.	ID=gene-RAF_RS03270;Name=RAF_RS03270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03270;old_locus_tag=RAF_ORF0591;pseudo=true
NC_012633.1	Protein Homology	CDS	621894	622900	.	-	0	ID=cds-RAF_RS03270;Parent=gene-RAF_RS03270;Note=frameshifted;Ontology_term=GO:0016491,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012149610.1;locus_tag=RAF_RS03270;product=NAD(P)/FAD-dependent oxidoreductase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	623045	623236	.	-	.	ID=gene-RAF_RS09830;Name=RAF_RS09830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09830
NC_012633.1	Protein Homology	CDS	623045	623236	.	-	0	ID=cds-WP_234943936.1;Parent=gene-RAF_RS09830;Dbxref=GenBank:WP_234943936.1;Name=WP_234943936.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442979.1;locus_tag=RAF_RS09830;product=type II toxin-antitoxin system Phd/YefM family antitoxin;protein_id=WP_234943936.1;transl_table=11
NC_012633.1	RefSeq	gene	624255	624752	.	+	.	ID=gene-RAF_RS09835;Name=RAF_RS09835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09835
NC_012633.1	Protein Homology	CDS	624255	624752	.	+	0	ID=cds-WP_234943933.1;Parent=gene-RAF_RS09835;Dbxref=GenBank:WP_234943933.1;Name=WP_234943933.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728198.1;locus_tag=RAF_RS09835;product=hypothetical protein;protein_id=WP_234943933.1;transl_table=11
NC_012633.1	RefSeq	gene	624724	624960	.	+	.	ID=gene-RAF_RS03295;Name=RAF_RS03295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03295
NC_012633.1	Protein Homology	CDS	624724	624960	.	+	0	ID=cds-WP_004995697.1;Parent=gene-RAF_RS03295;Dbxref=GenBank:WP_004995697.1;Name=WP_004995697.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830777.1;locus_tag=RAF_RS03295;product=fimbria/pilus outer membrane usher protein;protein_id=WP_004995697.1;transl_table=11
NC_012633.1	RefSeq	gene	624957	625151	.	+	.	ID=gene-RAF_RS03300;Name=RAF_RS03300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03300
NC_012633.1	Protein Homology	CDS	624957	625151	.	+	0	ID=cds-WP_041471864.1;Parent=gene-RAF_RS03300;Dbxref=GenBank:WP_041471864.1;Name=WP_041471864.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016916799.1;locus_tag=RAF_RS03300;product=hypothetical protein;protein_id=WP_041471864.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	625277	625775	.	+	.	ID=gene-RAF_RS03305;Name=RAF_RS03305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03305;old_locus_tag=RAF_ORF0595;pseudo=true
NC_012633.1	Protein Homology	CDS	625277	625775	.	+	0	ID=cds-RAF_RS03305;Parent=gene-RAF_RS03305;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770115.1;locus_tag=RAF_RS03305;product=spore coat protein U domain-containing protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	pseudogene	625923	626240	.	+	.	ID=gene-RAF_RS10580;Name=RAF_RS10580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10580;pseudo=true
NC_012633.1	Protein Homology	CDS	625923	626240	.	+	0	ID=cds-RAF_RS10580;Parent=gene-RAF_RS10580;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150837.1;locus_tag=RAF_RS10580;product=chitin-binding protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	626965	628788	.	+	.	ID=gene-RAF_RS03315;Name=RAF_RS03315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03315;old_locus_tag=RAF_ORF0596
NC_012633.1	Protein Homology	CDS	626965	628788	.	+	0	ID=cds-WP_012719716.1;Parent=gene-RAF_RS03315;Dbxref=GenBank:WP_012719716.1;Name=WP_012719716.1;Ontology_term=GO:0006260,GO:0004748;gbkey=CDS;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442983.1;locus_tag=RAF_RS03315;product=ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_012719716.1;transl_table=11
NC_012633.1	RefSeq	gene	628862	629257	.	+	.	ID=gene-RAF_RS09320;Name=RAF_RS09320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09320;old_locus_tag=RAF_ORF0597
NC_012633.1	Protein Homology	CDS	628862	629257	.	+	0	ID=cds-WP_012719717.1;Parent=gene-RAF_RS09320;Dbxref=GenBank:WP_012719717.1;Name=WP_012719717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977275.1;locus_tag=RAF_RS09320;product=PD-(D/E)XK nuclease family transposase;protein_id=WP_012719717.1;transl_table=11
NC_012633.1	RefSeq	gene	629211	629393	.	+	.	ID=gene-RAF_RS09325;Name=RAF_RS09325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09325
NC_012633.1	Protein Homology	CDS	629211	629393	.	+	0	ID=cds-WP_010977276.1;Parent=gene-RAF_RS09325;Dbxref=GenBank:WP_010977276.1;Name=WP_010977276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016916803.1;locus_tag=RAF_RS09325;product=hypothetical protein;protein_id=WP_010977276.1;transl_table=11
NC_012633.1	RefSeq	gene	629649	630635	.	+	.	ID=gene-RAF_RS03330;Name=RAF_RS03330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03330;old_locus_tag=RAF_ORF0598
NC_012633.1	Protein Homology	CDS	629649	630635	.	+	0	ID=cds-WP_004995690.1;Parent=gene-RAF_RS03330;Dbxref=GenBank:WP_004995690.1;Name=WP_004995690.1;Ontology_term=GO:0009263,GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016916804.1;locus_tag=RAF_RS03330;product=ribonucleotide-diphosphate reductase subunit beta;protein_id=WP_004995690.1;transl_table=11
NC_012633.1	RefSeq	gene	630778	633660	.	+	.	ID=gene-RAF_RS03335;Name=RAF_RS03335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03335;old_locus_tag=RAF_ORF0599
NC_012633.1	Protein Homology	CDS	630778	633660	.	+	0	ID=cds-WP_012719718.1;Parent=gene-RAF_RS03335;Dbxref=GenBank:WP_012719718.1;Name=WP_012719718.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719718.1;locus_tag=RAF_RS03335;product=pentapeptide repeat-containing protein;protein_id=WP_012719718.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	633807	635560	.	+	.	ID=gene-RAF_RS09840;Name=RAF_RS09840;end_range=635560,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS09840;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	633807	635560	.	+	0	ID=cds-RAF_RS09840;Parent=gene-RAF_RS09840;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=635560,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392262.1;locus_tag=RAF_RS09840;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	635743	636645	.	-	.	ID=gene-RAF_RS03350;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=RAF_RS03350;old_locus_tag=RAF_ORF0602
NC_012633.1	Protein Homology	CDS	635743	636645	.	-	0	ID=cds-WP_327203434.1;Parent=gene-RAF_RS03350;Dbxref=GenBank:WP_327203434.1;Name=WP_327203434.1;Ontology_term=GO:0006400,GO:0052381,GO:0005737;gbkey=CDS;gene=miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA dimethylallyltransferase activity|0052381||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010423038.1;locus_tag=RAF_RS03350;product=tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA;protein_id=WP_327203434.1;transl_table=11
NC_012633.1	RefSeq	gene	636960	637274	.	-	.	ID=gene-RAF_RS10585;Name=RAF_RS10585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10585
NC_012633.1	Protein Homology	CDS	636960	637274	.	-	0	ID=cds-WP_083762142.1;Parent=gene-RAF_RS10585;Dbxref=GenBank:WP_083762142.1;Name=WP_083762142.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728192.1;locus_tag=RAF_RS10585;product=hypothetical protein;protein_id=WP_083762142.1;transl_table=11
NC_012633.1	RefSeq	gene	637304	638692	.	-	.	ID=gene-RAF_RS03355;Name=RAF_RS03355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03355;old_locus_tag=RAF_ORF0603
NC_012633.1	Protein Homology	CDS	637304	638692	.	-	0	ID=cds-WP_012719720.1;Parent=gene-RAF_RS03355;Dbxref=GenBank:WP_012719720.1;Name=WP_012719720.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442956.1;locus_tag=RAF_RS03355;product=phosphomannomutase/phosphoglucomutase;protein_id=WP_012719720.1;transl_table=11
NC_012633.1	RefSeq	gene	638863	639585	.	-	.	ID=gene-RAF_RS03360;Name=lptB;gbkey=Gene;gene=lptB;gene_biotype=protein_coding;locus_tag=RAF_RS03360;old_locus_tag=RAF_ORF0604
NC_012633.1	Protein Homology	CDS	638863	639585	.	-	0	ID=cds-WP_012719721.1;Parent=gene-RAF_RS03360;Dbxref=GenBank:WP_012719721.1;Name=WP_012719721.1;Ontology_term=GO:0015920,GO:0015221,GO:0042626,GO:0043190;gbkey=CDS;gene=lptB;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995684.1;locus_tag=RAF_RS03360;product=LPS export ABC transporter ATP-binding protein;protein_id=WP_012719721.1;transl_table=11
NC_012633.1	RefSeq	gene	639773	640189	.	-	.	ID=gene-RAF_RS03365;Name=RAF_RS03365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03365;old_locus_tag=RAF_ORF0605
NC_012633.1	Protein Homology	CDS	639773	640189	.	-	0	ID=cds-WP_410524337.1;Parent=gene-RAF_RS03365;Dbxref=GenBank:WP_410524337.1;Name=WP_410524337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150849.1;locus_tag=RAF_RS03365;product=LptA/OstA family protein;protein_id=WP_410524337.1;transl_table=11
NC_012633.1	RefSeq	gene	640326	640922	.	-	.	ID=gene-RAF_RS03370;Name=lptC;gbkey=Gene;gene=lptC;gene_biotype=protein_coding;locus_tag=RAF_RS03370;old_locus_tag=RAF_ORF0606
NC_012633.1	Protein Homology	CDS	640326	640922	.	-	0	ID=cds-WP_012719723.1;Parent=gene-RAF_RS03370;Dbxref=GenBank:WP_012719723.1;Name=WP_012719723.1;gbkey=CDS;gene=lptC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945697.1;locus_tag=RAF_RS03370;product=LPS export ABC transporter periplasmic protein LptC;protein_id=WP_012719723.1;transl_table=11
NC_012633.1	RefSeq	gene	640928	641887	.	-	.	ID=gene-RAF_RS03375;Name=RAF_RS03375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03375;old_locus_tag=RAF_ORF0607
NC_012633.1	Protein Homology	CDS	640928	641887	.	-	0	ID=cds-WP_004995680.1;Parent=gene-RAF_RS03375;Dbxref=GenBank:WP_004995680.1;Name=WP_004995680.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597752.1;locus_tag=RAF_RS03375;product=SIS domain-containing protein;protein_id=WP_004995680.1;transl_table=11
NC_012633.1	RefSeq	gene	642087	644333	.	-	.	ID=gene-RAF_RS03380;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=protein_coding;locus_tag=RAF_RS03380;old_locus_tag=RAF_ORF0608
NC_012633.1	Protein Homology	CDS	642087	644333	.	-	0	ID=cds-WP_012719724.1;Parent=gene-RAF_RS03380;Dbxref=GenBank:WP_012719724.1;Name=WP_012719724.1;Ontology_term=GO:0006402,GO:0003723,GO:0004654;gbkey=CDS;gene=pnp;go_function=RNA binding|0003723||IEA,polyribonucleotide nucleotidyltransferase activity|0004654||IEA;go_process=mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271051.1;locus_tag=RAF_RS03380;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_012719724.1;transl_table=11
NC_012633.1	RefSeq	gene	644481	644756	.	-	.	ID=gene-RAF_RS03385;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;locus_tag=RAF_RS03385;old_locus_tag=RAF_ORF0609
NC_012633.1	Protein Homology	CDS	644481	644756	.	-	0	ID=cds-WP_004995678.1;Parent=gene-RAF_RS03385;Dbxref=GenBank:WP_004995678.1;Name=WP_004995678.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736361.1;locus_tag=RAF_RS03385;product=30S ribosomal protein S15;protein_id=WP_004995678.1;transl_table=11
NC_012633.1	RefSeq	gene	644792	645829	.	-	.	ID=gene-RAF_RS03390;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=RAF_RS03390;old_locus_tag=RAF_ORF0610
NC_012633.1	Protein Homology	CDS	644792	645829	.	-	0	ID=cds-WP_012719725.1;Parent=gene-RAF_RS03390;Dbxref=GenBank:WP_012719725.1;Name=WP_012719725.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truB;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409199.1;locus_tag=RAF_RS03390;product=tRNA pseudouridine(55) synthase TruB;protein_id=WP_012719725.1;transl_table=11
NC_012633.1	RefSeq	gene	645916	647451	.	+	.	ID=gene-RAF_RS03395;Name=tlc4;gbkey=Gene;gene=tlc4;gene_biotype=protein_coding;locus_tag=RAF_RS03395;old_locus_tag=RAF_ORF0611
NC_012633.1	Protein Homology	CDS	645916	647451	.	+	0	ID=cds-WP_012719726.1;Parent=gene-RAF_RS03395;Dbxref=GenBank:WP_012719726.1;Name=WP_012719726.1;gbkey=CDS;gene=tlc4;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271054.1;locus_tag=RAF_RS03395;product=NTP/NDP exchange transporter Tlc4;protein_id=WP_012719726.1;transl_table=11
NC_012633.1	RefSeq	gene	647741	650815	.	+	.	ID=gene-RAF_RS03400;Name=RAF_RS03400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03400;old_locus_tag=RAF_ORF0612
NC_012633.1	Protein Homology	CDS	647741	650815	.	+	0	ID=cds-WP_083762143.1;Parent=gene-RAF_RS03400;Dbxref=GenBank:WP_083762143.1;Name=WP_083762143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362349.1;locus_tag=RAF_RS03400;product=Sca4 family spreading effector;protein_id=WP_083762143.1;transl_table=11
NC_012633.1	RefSeq	gene	650934	651311	.	-	.	ID=gene-RAF_RS03405;Name=RAF_RS03405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03405;old_locus_tag=RAF_ORF0613
NC_012633.1	Protein Homology	CDS	650934	651311	.	-	0	ID=cds-WP_010977292.1;Parent=gene-RAF_RS03405;Dbxref=GenBank:WP_010977292.1;Name=WP_010977292.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977292.1;locus_tag=RAF_RS03405;product=helix-turn-helix domain-containing protein;protein_id=WP_010977292.1;transl_table=11
NC_012633.1	RefSeq	gene	651835	652662	.	+	.	ID=gene-RAF_RS03410;Name=RAF_RS03410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03410;old_locus_tag=RAF_ORF0614
NC_012633.1	Protein Homology	CDS	651835	652662	.	+	0	ID=cds-WP_012719728.1;Parent=gene-RAF_RS03410;Dbxref=GenBank:WP_012719728.1;Name=WP_012719728.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010423012.1;locus_tag=RAF_RS03410;product=YihY/virulence factor BrkB family protein;protein_id=WP_012719728.1;transl_table=11
NC_012633.1	RefSeq	gene	652811	653644	.	-	.	ID=gene-RAF_RS03415;Name=RAF_RS03415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03415;old_locus_tag=RAF_ORF0615
NC_012633.1	Protein Homology	CDS	652811	653644	.	-	0	ID=cds-WP_012719729.1;Parent=gene-RAF_RS03415;Dbxref=GenBank:WP_012719729.1;Name=WP_012719729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016916815.1;locus_tag=RAF_RS03415;product=glutamine synthetase family protein;protein_id=WP_012719729.1;transl_table=11
NC_012633.1	RefSeq	gene	653643	654365	.	+	.	ID=gene-RAF_RS03420;Name=pgeF;gbkey=Gene;gene=pgeF;gene_biotype=protein_coding;locus_tag=RAF_RS03420;old_locus_tag=RAF_ORF0616
NC_012633.1	Protein Homology	CDS	653643	654365	.	+	0	ID=cds-WP_012719730.1;Parent=gene-RAF_RS03420;Dbxref=GenBank:WP_012719730.1;Name=WP_012719730.1;gbkey=CDS;gene=pgeF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597737.1;locus_tag=RAF_RS03420;product=peptidoglycan editing factor PgeF;protein_id=WP_012719730.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	654437	654549	.	+	.	ID=gene-RAF_RS09845;Name=RAF_RS09845;end_range=654549,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS09845;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	654437	654549	.	+	0	ID=cds-RAF_RS09845;Parent=gene-RAF_RS09845;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=654549,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442852.1;locus_tag=RAF_RS09845;partial=true;product=lytic transglycosylase domain-containing protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	654658	655209	.	+	.	ID=gene-RAF_RS03425;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=RAF_RS03425;old_locus_tag=RAF_ORF0617
NC_012633.1	Protein Homology	CDS	654658	655209	.	+	0	ID=cds-WP_004995657.1;Parent=gene-RAF_RS03425;Dbxref=GenBank:WP_004995657.1;Name=WP_004995657.1;Ontology_term=GO:0036211,GO:0042586;gbkey=CDS;gene=def;go_function=peptide deformylase activity|0042586||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926285.1;locus_tag=RAF_RS03425;product=peptide deformylase;protein_id=WP_004995657.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	655420	655675	.	+	.	ID=gene-RAF_RS03430;Name=RAF_RS03430;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03430;old_locus_tag=RAF_ORF0618;pseudo=true
NC_012633.1	Protein Homology	CDS	655420	655675	.	+	0	ID=cds-RAF_RS03430;Parent=gene-RAF_RS03430;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945705.1;locus_tag=RAF_RS03430;product=type II toxin-antitoxin system Phd/YefM family antitoxin;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	655679	656083	.	+	.	ID=gene-RAF_RS03435;Name=RAF_RS03435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03435;old_locus_tag=RAF_ORF0619
NC_012633.1	Protein Homology	CDS	655679	656083	.	+	0	ID=cds-WP_004995653.1;Parent=gene-RAF_RS03435;Dbxref=GenBank:WP_004995653.1;Name=WP_004995653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442941.1;locus_tag=RAF_RS03435;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_004995653.1;transl_table=11
NC_012633.1	RefSeq	gene	656084	656779	.	-	.	ID=gene-RAF_RS03440;Name=RAF_RS03440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03440;old_locus_tag=RAF_ORF0620
NC_012633.1	Protein Homology	CDS	656084	656779	.	-	0	ID=cds-WP_012719732.1;Parent=gene-RAF_RS03440;Dbxref=GenBank:WP_012719732.1;Name=WP_012719732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599090.1;locus_tag=RAF_RS03440;product=class II aldolase/adducin family protein;protein_id=WP_012719732.1;transl_table=11
NC_012633.1	RefSeq	gene	657015	658823	.	-	.	ID=gene-RAF_RS03445;Name=RAF_RS03445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03445;old_locus_tag=RAF_ORF0621
NC_012633.1	Protein Homology	CDS	657015	658823	.	-	0	ID=cds-WP_012719733.1;Parent=gene-RAF_RS03445;Dbxref=GenBank:WP_012719733.1;Name=WP_012719733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014120822.1;locus_tag=RAF_RS03445;product=hypothetical protein;protein_id=WP_012719733.1;transl_table=11
NC_012633.1	RefSeq	gene	659077	661713	.	-	.	ID=gene-RAF_RS03450;Name=ppdK;gbkey=Gene;gene=ppdK;gene_biotype=protein_coding;locus_tag=RAF_RS03450;old_locus_tag=RAF_ORF0622
NC_012633.1	Protein Homology	CDS	659077	661713	.	-	0	ID=cds-WP_012719734.1;Parent=gene-RAF_RS03450;Dbxref=GenBank:WP_012719734.1;Name=WP_012719734.1;Ontology_term=GO:0006090,GO:0050242;gbkey=CDS;gene=ppdK;go_function=pyruvate%2C phosphate dikinase activity|0050242||IEA;go_process=pyruvate metabolic process|0006090||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442944.1;locus_tag=RAF_RS03450;product=pyruvate%2C phosphate dikinase;protein_id=WP_012719734.1;transl_table=11
NC_012633.1	RefSeq	gene	662030	662546	.	+	.	ID=gene-RAF_RS07120;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=RNase_P_RNA;locus_tag=RAF_RS07120;old_locus_tag=RAF_RNA15
NC_012633.1	cmsearch	RNase_P_RNA	662030	662546	.	+	.	ID=rna-RAF_RS07120;Parent=gene-RAF_RS07120;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS07120;product=RNase P RNA component class A
NC_012633.1	cmsearch	exon	662030	662546	.	+	.	ID=exon-RAF_RS07120-1;Parent=rna-RAF_RS07120;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS07120;product=RNase P RNA component class A
NC_012633.1	RefSeq	gene	662644	663312	.	+	.	ID=gene-RAF_RS03455;Name=RAF_RS03455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03455;old_locus_tag=RAF_ORF0623
NC_012633.1	Protein Homology	CDS	662644	663312	.	+	0	ID=cds-WP_012719735.1;Parent=gene-RAF_RS03455;Dbxref=GenBank:WP_012719735.1;Name=WP_012719735.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442945.1;locus_tag=RAF_RS03455;product=glutathione S-transferase family protein;protein_id=WP_012719735.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	663300	663481	.	-	.	ID=gene-RAF_RS10720;Name=RAF_RS10720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10720;partial=true;pseudo=true;start_range=.,663300
NC_012633.1	Protein Homology	CDS	663300	663481	.	-	0	ID=cds-RAF_RS10720;Parent=gene-RAF_RS10720;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364904.1;locus_tag=RAF_RS10720;partial=true;product=palindromic element RPE1 domain-containing protein;pseudo=true;start_range=.,663300;transl_table=11
NC_012633.1	RefSeq	gene	663424	664176	.	-	.	ID=gene-RAF_RS03460;Name=RAF_RS03460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03460;old_locus_tag=RAF_ORF0624
NC_012633.1	Protein Homology	CDS	663424	664176	.	-	0	ID=cds-WP_012719736.1;Parent=gene-RAF_RS03460;Dbxref=GenBank:WP_012719736.1;Name=WP_012719736.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945769.1;locus_tag=RAF_RS03460;product=BPL-N domain-containing protein;protein_id=WP_012719736.1;transl_table=11
NC_012633.1	RefSeq	gene	664252	664794	.	+	.	ID=gene-RAF_RS03465;Name=RAF_RS03465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03465;old_locus_tag=RAF_ORF0625
NC_012633.1	Protein Homology	CDS	664252	664794	.	+	0	ID=cds-WP_012719737.1;Parent=gene-RAF_RS03465;Dbxref=GenBank:WP_012719737.1;Name=WP_012719737.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442947.1;locus_tag=RAF_RS03465;product=biotin transporter BioY;protein_id=WP_012719737.1;transl_table=11
NC_012633.1	RefSeq	gene	664996	666276	.	+	.	ID=gene-RAF_RS03470;Name=RAF_RS03470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03470;old_locus_tag=RAF_ORF0626
NC_012633.1	Protein Homology	CDS	664996	666276	.	+	0	ID=cds-WP_012719738.1;Parent=gene-RAF_RS03470;Dbxref=GenBank:WP_012719738.1;Name=WP_012719738.1;Ontology_term=GO:0006730,GO:0004326,GO:0005524,GO:0008841,GO:0046872;gbkey=CDS;go_function=tetrahydrofolylpolyglutamate synthase activity|0004326||IEA,ATP binding|0005524||IEA,dihydrofolate synthase activity|0008841||IEA,metal ion binding|0046872||IEA;go_process=one-carbon metabolic process|0006730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362938.1;locus_tag=RAF_RS03470;product=folylpolyglutamate synthase/dihydrofolate synthase family protein;protein_id=WP_012719738.1;transl_table=11
NC_012633.1	RefSeq	gene	666447	667076	.	+	.	ID=gene-RAF_RS03480;Name=RAF_RS03480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03480;old_locus_tag=RAF_ORF0627
NC_012633.1	Protein Homology	CDS	666447	667076	.	+	0	ID=cds-WP_010977391.1;Parent=gene-RAF_RS03480;Dbxref=GenBank:WP_010977391.1;Name=WP_010977391.1;Ontology_term=GO:0006801,GO:0004784,GO:0046872;gbkey=CDS;go_function=superoxide dismutase activity|0004784||IEA,metal ion binding|0046872||IEA;go_process=superoxide metabolic process|0006801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599063.1;locus_tag=RAF_RS03480;product=superoxide dismutase;protein_id=WP_010977391.1;transl_table=11
NC_012633.1	RefSeq	gene	667081	667242	.	+	.	ID=gene-RAF_RS10725;Name=RAF_RS10725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10725
NC_012633.1	Protein Homology	CDS	667081	667242	.	+	0	ID=cds-WP_410524332.1;Parent=gene-RAF_RS10725;Dbxref=GenBank:WP_410524332.1;Name=WP_410524332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926348.1;locus_tag=RAF_RS10725;product=hypothetical protein;protein_id=WP_410524332.1;transl_table=11
NC_012633.1	RefSeq	gene	667410	667562	.	+	.	ID=gene-RAF_RS10730;Name=RAF_RS10730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10730
NC_012633.1	Protein Homology	CDS	667410	667562	.	+	0	ID=cds-WP_410524333.1;Parent=gene-RAF_RS10730;Dbxref=GenBank:WP_410524333.1;Name=WP_410524333.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995624.1;locus_tag=RAF_RS10730;product=hypothetical protein;protein_id=WP_410524333.1;transl_table=11
NC_012633.1	RefSeq	gene	667546	668031	.	+	.	ID=gene-RAF_RS10735;Name=RAF_RS10735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10735
NC_012633.1	Protein Homology	CDS	667546	668031	.	+	0	ID=cds-WP_041471869.1;Parent=gene-RAF_RS10735;Dbxref=GenBank:WP_041471869.1;Name=WP_041471869.1;Ontology_term=GO:0006629;gbkey=CDS;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995623.1;locus_tag=RAF_RS10735;product=patatin-like phospholipase family protein;protein_id=WP_041471869.1;transl_table=11
NC_012633.1	RefSeq	gene	668021	668170	.	+	.	ID=gene-RAF_RS10740;Name=RAF_RS10740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10740
NC_012633.1	GeneMarkS-2+	CDS	668021	668170	.	+	0	ID=cds-WP_410003118.1;Parent=gene-RAF_RS10740;Dbxref=GenBank:WP_410003118.1;Name=WP_410003118.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10740;product=hypothetical protein;protein_id=WP_410003118.1;transl_table=11
NC_012633.1	RefSeq	gene	668232	668657	.	+	.	ID=gene-RAF_RS10745;Name=RAF_RS10745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10745
NC_012633.1	GeneMarkS-2+	CDS	668232	668657	.	+	0	ID=cds-WP_410524334.1;Parent=gene-RAF_RS10745;Dbxref=GenBank:WP_410524334.1;Name=WP_410524334.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10745;product=hypothetical protein;protein_id=WP_410524334.1;transl_table=11
NC_012633.1	RefSeq	gene	668630	668977	.	+	.	ID=gene-RAF_RS10750;Name=RAF_RS10750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10750
NC_012633.1	GeneMarkS-2+	CDS	668630	668977	.	+	0	ID=cds-WP_410524335.1;Parent=gene-RAF_RS10750;Dbxref=GenBank:WP_410524335.1;Name=WP_410524335.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10750;product=hypothetical protein;protein_id=WP_410524335.1;transl_table=11
NC_012633.1	RefSeq	gene	668993	669805	.	+	.	ID=gene-RAF_RS03495;Name=RAF_RS03495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03495;old_locus_tag=RAF_ORF0632
NC_012633.1	Protein Homology	CDS	668993	669805	.	+	0	ID=cds-WP_012719739.1;Parent=gene-RAF_RS03495;Dbxref=GenBank:WP_012719739.1;Name=WP_012719739.1;Ontology_term=GO:0036211,GO:0004077;gbkey=CDS;go_function=biotin--[biotin carboxyl-carrier protein] ligase activity|0004077||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014014365.1;locus_tag=RAF_RS03495;product=biotin--[acetyl-CoA-carboxylase] ligase;protein_id=WP_012719739.1;transl_table=11
NC_012633.1	RefSeq	gene	670266	670754	.	+	.	ID=gene-RAF_RS03505;Name=RAF_RS03505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03505;old_locus_tag=RAF_ORF0633
NC_012633.1	Protein Homology	CDS	670266	670754	.	+	0	ID=cds-WP_041471870.1;Parent=gene-RAF_RS03505;Dbxref=GenBank:WP_041471870.1;Name=WP_041471870.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150874.1;locus_tag=RAF_RS03505;product=TIGR02217 family protein;protein_id=WP_041471870.1;transl_table=11
NC_012633.1	RefSeq	gene	670751	671035	.	+	.	ID=gene-RAF_RS03510;Name=RAF_RS03510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03510;old_locus_tag=RAF_ORF0634
NC_012633.1	Protein Homology	CDS	670751	671035	.	+	0	ID=cds-WP_012719741.1;Parent=gene-RAF_RS03510;Dbxref=GenBank:WP_012719741.1;Name=WP_012719741.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719741.1;locus_tag=RAF_RS03510;product=DUF2163 domain-containing protein;protein_id=WP_012719741.1;transl_table=11
NC_012633.1	RefSeq	gene	671050	671220	.	+	.	ID=gene-RAF_RS07820;Name=RAF_RS07820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07820;old_locus_tag=RAF_ORF0635
NC_012633.1	Protein Homology	CDS	671050	671220	.	+	0	ID=cds-WP_004995615.1;Parent=gene-RAF_RS07820;Dbxref=GenBank:WP_004995615.1;Name=WP_004995615.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410737.1;locus_tag=RAF_RS07820;product=phage BR0599 family protein;protein_id=WP_004995615.1;transl_table=11
NC_012633.1	RefSeq	gene	671224	671397	.	+	.	ID=gene-RAF_RS09335;Name=RAF_RS09335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09335;old_locus_tag=RAF_ORF0636
NC_012633.1	Protein Homology	CDS	671224	671397	.	+	0	ID=cds-WP_012719742.1;Parent=gene-RAF_RS09335;Dbxref=GenBank:WP_012719742.1;Name=WP_012719742.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004995613.1;locus_tag=RAF_RS09335;product=hypothetical protein;protein_id=WP_012719742.1;transl_table=11
NC_012633.1	RefSeq	gene	671384	671713	.	+	.	ID=gene-RAF_RS03515;Name=RAF_RS03515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03515;old_locus_tag=RAF_ORF0637
NC_012633.1	Protein Homology	CDS	671384	671713	.	+	0	ID=cds-WP_010977381.1;Parent=gene-RAF_RS03515;Dbxref=GenBank:WP_010977381.1;Name=WP_010977381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362932.1;locus_tag=RAF_RS03515;product=DUF2335 domain-containing protein;protein_id=WP_010977381.1;transl_table=11
NC_012633.1	RefSeq	gene	671777	672337	.	+	.	ID=gene-RAF_RS03520;Name=infC;gbkey=Gene;gene=infC;gene_biotype=protein_coding;locus_tag=RAF_RS03520;old_locus_tag=RAF_ORF0638
NC_012633.1	Protein Homology	CDS	671777	672337	.	+	0	ID=cds-WP_081420718.1;Parent=gene-RAF_RS03520;Dbxref=GenBank:WP_081420718.1;Name=WP_081420718.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infC;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012152830.1;locus_tag=RAF_RS03520;product=translation initiation factor IF-3;protein_id=WP_081420718.1;transl_table=11
NC_012633.1	RefSeq	gene	672472	673710	.	+	.	ID=gene-RAF_RS03525;Name=RAF_RS03525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03525;old_locus_tag=RAF_ORF0639
NC_012633.1	Protein Homology	CDS	672472	673710	.	+	0	ID=cds-WP_012719743.1;Parent=gene-RAF_RS03525;Dbxref=GenBank:WP_012719743.1;Name=WP_012719743.1;Ontology_term=GO:0006090,GO:0004742,GO:0045254;gbkey=CDS;go_component=pyruvate dehydrogenase complex|0045254||IEA;go_function=dihydrolipoyllysine-residue acetyltransferase activity|0004742||IEA;go_process=pyruvate metabolic process|0006090||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190967.1;locus_tag=RAF_RS03525;product=pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase;protein_id=WP_012719743.1;transl_table=11
NC_012633.1	RefSeq	gene	673843	674910	.	+	.	ID=gene-RAF_RS03530;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=RAF_RS03530;old_locus_tag=RAF_ORF0640
NC_012633.1	Protein Homology	CDS	673843	674910	.	+	0	ID=cds-WP_012719744.1;Parent=gene-RAF_RS03530;Dbxref=GenBank:WP_012719744.1;Name=WP_012719744.1;Ontology_term=GO:0006415,GO:0016149;gbkey=CDS;gene=prfA;go_function=translation release factor activity%2C codon specific|0016149||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012149660.1;locus_tag=RAF_RS03530;product=peptide chain release factor 1;protein_id=WP_012719744.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	675095	675521	.	-	.	ID=gene-RAF_RS03535;Name=RAF_RS03535;end_range=675521,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03535;partial=true;pseudo=true;start_range=.,675095
NC_012633.1	Protein Homology	CDS	675095	675521	.	-	0	ID=cds-RAF_RS03535;Parent=gene-RAF_RS03535;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=675521,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017443409.1;locus_tag=RAF_RS03535;partial=true;product=NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta;pseudo=true;start_range=.,675095;transl_table=11
NC_012633.1	RefSeq	gene	676966	678729	.	+	.	ID=gene-RAF_RS03540;Name=recJ;gbkey=Gene;gene=recJ;gene_biotype=protein_coding;locus_tag=RAF_RS03540;old_locus_tag=RAF_ORF0643
NC_012633.1	Protein Homology	CDS	676966	678729	.	+	0	ID=cds-WP_012719747.1;Parent=gene-RAF_RS03540;Dbxref=GenBank:WP_012719747.1;Name=WP_012719747.1;Ontology_term=GO:0006281,GO:0006310,GO:0008409;gbkey=CDS;gene=recJ;go_function=5'-3' exonuclease activity|0008409||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442914.1;locus_tag=RAF_RS03540;product=single-stranded-DNA-specific exonuclease RecJ;protein_id=WP_012719747.1;transl_table=11
NC_012633.1	RefSeq	gene	678773	680095	.	+	.	ID=gene-RAF_RS03545;Name=RAF_RS03545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03545;old_locus_tag=RAF_ORF0644
NC_012633.1	Protein Homology	CDS	678773	680095	.	+	0	ID=cds-WP_012719748.1;Parent=gene-RAF_RS03545;Dbxref=GenBank:WP_012719748.1;Name=WP_012719748.1;Ontology_term=GO:0032259,GO:0008168,GO:0008757,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926337.1;locus_tag=RAF_RS03545;product=class I SAM-dependent methyltransferase;protein_id=WP_012719748.1;transl_table=11
NC_012633.1	RefSeq	gene	680480	681856	.	+	.	ID=gene-RAF_RS03550;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=RAF_RS03550;old_locus_tag=RAF_ORF0645
NC_012633.1	Protein Homology	CDS	680480	681856	.	+	0	ID=cds-WP_004998383.1;Parent=gene-RAF_RS03550;Dbxref=GenBank:WP_004998383.1;Name=WP_004998383.1;Ontology_term=GO:0006353,GO:0003723,GO:0005524,GO:0008186;gbkey=CDS;gene=rho;go_function=RNA binding|0003723||IEA,ATP binding|0005524||IEA,ATP-dependent activity%2C acting on RNA|0008186||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597794.1;locus_tag=RAF_RS03550;product=transcription termination factor Rho;protein_id=WP_004998383.1;transl_table=11
NC_012633.1	RefSeq	gene	681981	682895	.	+	.	ID=gene-RAF_RS03555;Name=sppA;gbkey=Gene;gene=sppA;gene_biotype=protein_coding;locus_tag=RAF_RS03555;old_locus_tag=RAF_ORF0646
NC_012633.1	Protein Homology	CDS	681981	682895	.	+	0	ID=cds-WP_012719749.1;Parent=gene-RAF_RS03555;Dbxref=GenBank:WP_012719749.1;Name=WP_012719749.1;Ontology_term=GO:0006465,GO:0004252;gbkey=CDS;gene=sppA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392310.1;locus_tag=RAF_RS03555;product=signal peptide peptidase SppA;protein_id=WP_012719749.1;transl_table=11
NC_012633.1	RefSeq	gene	682898	683140	.	+	.	ID=gene-RAF_RS03560;Name=RAF_RS03560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03560;old_locus_tag=RAF_ORF0647
NC_012633.1	Protein Homology	CDS	682898	683140	.	+	0	ID=cds-WP_004998379.1;Parent=gene-RAF_RS03560;Dbxref=GenBank:WP_004998379.1;Name=WP_004998379.1;Ontology_term=GO:0003677,GO:0030527;gbkey=CDS;go_function=DNA binding|0003677||IEA,structural constituent of chromatin|0030527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150884.1;locus_tag=RAF_RS03560;product=HU family DNA-binding protein;protein_id=WP_004998379.1;transl_table=11
NC_012633.1	RefSeq	gene	683147	683347	.	+	.	ID=gene-RAF_RS03565;Name=RAF_RS03565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03565
NC_012633.1	Protein Homology	CDS	683147	683347	.	+	0	ID=cds-WP_041471871.1;Parent=gene-RAF_RS03565;Dbxref=GenBank:WP_041471871.1;Name=WP_041471871.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014120834.1;locus_tag=RAF_RS03565;product=hypothetical protein;protein_id=WP_041471871.1;transl_table=11
NC_012633.1	RefSeq	gene	683711	683902	.	+	.	ID=gene-RAF_RS03570;Name=RAF_RS03570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03570
NC_012633.1	Protein Homology	CDS	683711	683902	.	+	0	ID=cds-WP_041471872.1;Parent=gene-RAF_RS03570;Dbxref=GenBank:WP_041471872.1;Name=WP_041471872.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150887.1;locus_tag=RAF_RS03570;product=hypothetical protein;protein_id=WP_041471872.1;transl_table=11
NC_012633.1	RefSeq	gene	683905	684651	.	+	.	ID=gene-RAF_RS03575;Name=RAF_RS03575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03575;old_locus_tag=RAF_ORF0648
NC_012633.1	Protein Homology	CDS	683905	684651	.	+	0	ID=cds-WP_012719750.1;Parent=gene-RAF_RS03575;Dbxref=GenBank:WP_012719750.1;Name=WP_012719750.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719750.1;locus_tag=RAF_RS03575;product=YaaA family protein;protein_id=WP_012719750.1;transl_table=11
NC_012633.1	RefSeq	gene	684763	684975	.	-	.	ID=gene-RAF_RS03580;Name=RAF_RS03580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03580
NC_012633.1	Protein Homology	CDS	684763	684975	.	-	0	ID=cds-WP_041471873.1;Parent=gene-RAF_RS03580;Dbxref=GenBank:WP_041471873.1;Name=WP_041471873.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150889.1;locus_tag=RAF_RS03580;product=hypothetical protein;protein_id=WP_041471873.1;transl_table=11
NC_012633.1	RefSeq	gene	684989	685444	.	+	.	ID=gene-RAF_RS03585;Name=RAF_RS03585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03585;old_locus_tag=RAF_ORF0649
NC_012633.1	Protein Homology	CDS	684989	685444	.	+	0	ID=cds-WP_004998372.1;Parent=gene-RAF_RS03585;Dbxref=GenBank:WP_004998372.1;Name=WP_004998372.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004998372.1;locus_tag=RAF_RS03585;product=hypothetical protein;protein_id=WP_004998372.1;transl_table=11
NC_012633.1	RefSeq	gene	685411	685593	.	+	.	ID=gene-RAF_RS03590;Name=RAF_RS03590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03590
NC_012633.1	Protein Homology	CDS	685411	685593	.	+	0	ID=cds-WP_041471874.1;Parent=gene-RAF_RS03590;Dbxref=GenBank:WP_041471874.1;Name=WP_041471874.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945753.1;locus_tag=RAF_RS03590;product=hypothetical protein;protein_id=WP_041471874.1;transl_table=11
NC_012633.1	RefSeq	gene	685648	686274	.	+	.	ID=gene-RAF_RS03595;Name=RAF_RS03595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03595;old_locus_tag=RAF_ORF0650
NC_012633.1	Protein Homology	CDS	685648	686274	.	+	0	ID=cds-WP_410524338.1;Parent=gene-RAF_RS03595;Dbxref=GenBank:WP_410524338.1;Name=WP_410524338.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392532.1;locus_tag=RAF_RS03595;product=type IV secretion system DNA-binding domain-containing protein;protein_id=WP_410524338.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	686516	686836	.	-	.	ID=gene-RAF_RS07825;Name=RAF_RS07825;end_range=686836,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS07825;old_locus_tag=RAF_ORF0651;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	686516	686836	.	-	0	ID=cds-RAF_RS07825;Parent=gene-RAF_RS07825;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=686836,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008579927.1;locus_tag=RAF_RS07825;partial=true;product=transposase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	pseudogene	686832	687311	.	-	.	ID=gene-RAF_RS03600;Name=RAF_RS03600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03600;old_locus_tag=RAF_ORF0652;partial=true;pseudo=true;start_range=.,686832
NC_012633.1	Protein Homology	CDS	686832	687311	.	-	0	ID=cds-RAF_RS03600;Parent=gene-RAF_RS03600;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270723.1;locus_tag=RAF_RS03600;partial=true;product=HD domain-containing protein;pseudo=true;start_range=.,686832;transl_table=11
NC_012633.1	RefSeq	pseudogene	687458	687520	.	-	.	ID=gene-RAF_RS10755;Name=RAF_RS10755;end_range=687520,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10755;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	687458	687520	.	-	0	ID=cds-RAF_RS10755;Parent=gene-RAF_RS10755;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=687520,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015038.5;locus_tag=RAF_RS10755;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	687892	688803	.	-	.	ID=gene-RAF_RS03605;Name=RAF_RS03605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03605
NC_012633.1	Protein Homology	CDS	687892	688803	.	-	0	ID=cds-WP_148206963.1;Parent=gene-RAF_RS03605;Dbxref=GenBank:WP_148206963.1;Name=WP_148206963.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: protein motif:HMM:NF024206.5;locus_tag=RAF_RS03605;product=ankyrin repeat domain-containing protein;protein_id=WP_148206963.1;transl_table=11
NC_012633.1	RefSeq	gene	689001	690005	.	-	.	ID=gene-RAF_RS03610;Name=RAF_RS03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03610
NC_012633.1	Protein Homology	CDS	689001	690005	.	-	0	ID=cds-WP_041471876.1;Parent=gene-RAF_RS03610;Dbxref=GenBank:WP_041471876.1;Name=WP_041471876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014408681.1;locus_tag=RAF_RS03610;product=bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=WP_041471876.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	690092	690827	.	-	.	ID=gene-RAF_RS03615;Name=RAF_RS03615;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03615;old_locus_tag=RAF_ORF0655;pseudo=true
NC_012633.1	Protein Homology	CDS	690092	690827	.	-	0	ID=cds-RAF_RS03615;Parent=gene-RAF_RS03615;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392523.1;locus_tag=RAF_RS03615;product=HD domain-containing protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	pseudogene	691081	691997	.	-	.	ID=gene-RAF_RS10595;Name=RAF_RS10595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10595;old_locus_tag=RAF_ORF0657;pseudo=true
NC_012633.1	Protein Homology	CDS	691081	691997	.	-	0	ID=cds-RAF_RS10595;Parent=gene-RAF_RS10595;Note=frameshifted%3B internal stop;Ontology_term=GO:0000160,GO:0007165,GO:0000155,GO:0004673,GO:0005524,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008579934.1;locus_tag=RAF_RS10595;product=sensor histidine kinase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	692424	693236	.	+	.	ID=gene-RAF_RS03625;Name=RAF_RS03625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03625;old_locus_tag=RAF_ORF0659
NC_012633.1	Protein Homology	CDS	692424	693236	.	+	0	ID=cds-WP_012719754.1;Parent=gene-RAF_RS03625;Dbxref=GenBank:WP_012719754.1;Name=WP_012719754.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014408682.1;locus_tag=RAF_RS03625;product=DNA adenine methylase;protein_id=WP_012719754.1;transl_table=11
NC_012633.1	RefSeq	gene	693238	694944	.	-	.	ID=gene-RAF_RS03630;Name=RAF_RS03630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03630;old_locus_tag=RAF_ORF0660
NC_012633.1	Protein Homology	CDS	693238	694944	.	-	0	ID=cds-WP_012719755.1;Parent=gene-RAF_RS03630;Dbxref=GenBank:WP_012719755.1;Name=WP_012719755.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364760.1;locus_tag=RAF_RS03630;product=hypothetical protein;protein_id=WP_012719755.1;transl_table=11
NC_012633.1	RefSeq	gene	695083	695159	.	-	.	ID=gene-RAF_RS03635;Name=RAF_RS03635;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS03635;old_locus_tag=RAF_RNA16
NC_012633.1	tRNAscan-SE	tRNA	695083	695159	.	-	.	ID=rna-RAF_RS03635;Parent=gene-RAF_RS03635;anticodon=(pos:complement(695123..695125));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS03635;product=tRNA-Val
NC_012633.1	tRNAscan-SE	exon	695083	695159	.	-	.	ID=exon-RAF_RS03635-1;Parent=rna-RAF_RS03635;anticodon=(pos:complement(695123..695125));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS03635;product=tRNA-Val
NC_012633.1	RefSeq	gene	695380	695556	.	+	.	ID=gene-RAF_RS09860;Name=RAF_RS09860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09860;old_locus_tag=RAF_ORF0661
NC_012633.1	Protein Homology	CDS	695380	695556	.	+	0	ID=cds-WP_012719756.1;Parent=gene-RAF_RS09860;Dbxref=GenBank:WP_012719756.1;Name=WP_012719756.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004998366.1;locus_tag=RAF_RS09860;product=hypothetical protein;protein_id=WP_012719756.1;transl_table=11
NC_012633.1	RefSeq	gene	695780	696439	.	+	.	ID=gene-RAF_RS03640;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;locus_tag=RAF_RS03640;old_locus_tag=RAF_ORF0662
NC_012633.1	Protein Homology	CDS	695780	696439	.	+	0	ID=cds-WP_012719757.1;Parent=gene-RAF_RS03640;Dbxref=GenBank:WP_012719757.1;Name=WP_012719757.1;Ontology_term=GO:0015949,GO:0004127,GO:0005524;gbkey=CDS;gene=cmk;go_function=(d)CMP kinase activity|0004127||IEA,ATP binding|0005524||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597789.1;locus_tag=RAF_RS03640;product=(d)CMP kinase;protein_id=WP_012719757.1;transl_table=11
NC_012633.1	RefSeq	gene	696695	698401	.	+	.	ID=gene-RAF_RS03645;Name=RAF_RS03645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03645;old_locus_tag=RAF_ORF0663
NC_012633.1	Protein Homology	CDS	696695	698401	.	+	0	ID=cds-WP_012719758.1;Parent=gene-RAF_RS03645;Dbxref=GenBank:WP_012719758.1;Name=WP_012719758.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442895.1;locus_tag=RAF_RS03645;product=30S ribosomal protein S1;protein_id=WP_012719758.1;transl_table=11
NC_012633.1	RefSeq	gene	698561	699166	.	+	.	ID=gene-RAF_RS03650;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;locus_tag=RAF_RS03650;old_locus_tag=RAF_ORF0664
NC_012633.1	Protein Homology	CDS	698561	699166	.	+	0	ID=cds-WP_014410745.1;Parent=gene-RAF_RS03650;Dbxref=GenBank:WP_014410745.1;Name=WP_014410745.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0009368;gbkey=CDS;gene=clpP;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190958.1;locus_tag=RAF_RS03650;product=ATP-dependent Clp endopeptidase proteolytic subunit ClpP;protein_id=WP_014410745.1;transl_table=11
NC_012633.1	RefSeq	gene	699325	699400	.	+	.	ID=gene-RAF_RS03655;Name=RAF_RS03655;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS03655;old_locus_tag=RAF_RNA17
NC_012633.1	tRNAscan-SE	tRNA	699325	699400	.	+	.	ID=rna-RAF_RS03655;Parent=gene-RAF_RS03655;anticodon=(pos:699358..699360);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS03655;product=tRNA-Ala
NC_012633.1	tRNAscan-SE	exon	699325	699400	.	+	.	ID=exon-RAF_RS03655-1;Parent=rna-RAF_RS03655;anticodon=(pos:699358..699360);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS03655;product=tRNA-Ala
NC_012633.1	RefSeq	gene	699750	699917	.	+	.	ID=gene-RAF_RS09340;Name=RAF_RS09340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09340
NC_012633.1	Protein Homology	CDS	699750	699917	.	+	0	ID=cds-WP_200858165.1;Parent=gene-RAF_RS09340;Dbxref=GenBank:WP_200858165.1;Name=WP_200858165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273527.1;locus_tag=RAF_RS09340;product=hypothetical protein;protein_id=WP_200858165.1;transl_table=11
NC_012633.1	RefSeq	gene	700101	701129	.	+	.	ID=gene-RAF_RS03665;Name=fni;gbkey=Gene;gene=fni;gene_biotype=protein_coding;locus_tag=RAF_RS03665;old_locus_tag=RAF_ORF0665
NC_012633.1	Protein Homology	CDS	700101	701129	.	+	0	ID=cds-WP_012719760.1;Parent=gene-RAF_RS03665;Dbxref=GenBank:WP_012719760.1;Name=WP_012719760.1;Ontology_term=GO:0008299,GO:0004452,GO:0010181;gbkey=CDS;gene=fni;go_function=isopentenyl-diphosphate delta-isomerase activity|0004452||IEA,FMN binding|0010181||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977362.1;locus_tag=RAF_RS03665;product=type 2 isopentenyl-diphosphate Delta-isomerase;protein_id=WP_012719760.1;transl_table=11
NC_012633.1	RefSeq	gene	701219	701440	.	-	.	ID=gene-RAF_RS03670;Name=RAF_RS03670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03670;old_locus_tag=RAF_ORF0666
NC_012633.1	Protein Homology	CDS	701219	701440	.	-	0	ID=cds-WP_012719761.1;Parent=gene-RAF_RS03670;Dbxref=GenBank:WP_012719761.1;Name=WP_012719761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719761.1;locus_tag=RAF_RS03670;product=acetyltransferase;protein_id=WP_012719761.1;transl_table=11
NC_012633.1	RefSeq	gene	701474	701689	.	-	.	ID=gene-RAF_RS03675;Name=RAF_RS03675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03675;old_locus_tag=RAF_ORF0667
NC_012633.1	Protein Homology	CDS	701474	701689	.	-	0	ID=cds-WP_012719762.1;Parent=gene-RAF_RS03675;Dbxref=GenBank:WP_012719762.1;Name=WP_012719762.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364764.1;locus_tag=RAF_RS03675;product=hypothetical protein;protein_id=WP_012719762.1;transl_table=11
NC_012633.1	RefSeq	gene	701686	702135	.	-	.	ID=gene-RAF_RS03680;Name=RAF_RS03680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03680;old_locus_tag=RAF_ORF0668
NC_012633.1	Protein Homology	CDS	701686	702135	.	-	0	ID=cds-WP_012719763.1;Parent=gene-RAF_RS03680;Dbxref=GenBank:WP_012719763.1;Name=WP_012719763.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442831.1;locus_tag=RAF_RS03680;product=GNAT family N-acetyltransferase;protein_id=WP_012719763.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	702184	702626	.	-	.	ID=gene-RAF_RS09865;Name=RAF_RS09865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS09865;old_locus_tag=RAF_ORF0669;pseudo=true
NC_012633.1	Protein Homology	CDS	702184	702626	.	-	0	ID=cds-RAF_RS09865;Parent=gene-RAF_RS09865;Note=frameshifted;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018009.5;locus_tag=RAF_RS09865;product=PDDEXK nuclease domain-containing protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	702949	703185	.	-	.	ID=gene-RAF_RS03695;Name=RAF_RS03695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03695
NC_012633.1	Protein Homology	CDS	702949	703185	.	-	0	ID=cds-WP_041471877.1;Parent=gene-RAF_RS03695;Dbxref=GenBank:WP_041471877.1;Name=WP_041471877.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926323.1;locus_tag=RAF_RS03695;product=hypothetical protein;protein_id=WP_041471877.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	703271	703701	.	+	.	ID=gene-RAF_RS10760;Name=RAF_RS10760;end_range=703701,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10760;partial=true;pseudo=true;start_range=.,703271
NC_012633.1	Protein Homology	CDS	703271	703701	.	+	0	ID=cds-RAF_RS10760;Parent=gene-RAF_RS10760;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=703701,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270886.1;locus_tag=RAF_RS10760;partial=true;product=Rpn family recombination-promoting nuclease/putative transposase;pseudo=true;start_range=.,703271;transl_table=11
NC_012633.1	RefSeq	gene	703808	704680	.	+	.	ID=gene-RAF_RS03705;Name=RAF_RS03705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03705;old_locus_tag=RAF_ORF0671
NC_012633.1	Protein Homology	CDS	703808	704680	.	+	0	ID=cds-WP_012719766.1;Parent=gene-RAF_RS03705;Dbxref=GenBank:WP_012719766.1;Name=WP_012719766.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273532.1;locus_tag=RAF_RS03705;product=DUF1189 family protein;protein_id=WP_012719766.1;transl_table=11
NC_012633.1	RefSeq	gene	704634	705239	.	+	.	ID=gene-RAF_RS09875;Name=RAF_RS09875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09875
NC_012633.1	GeneMarkS-2+	CDS	704634	705239	.	+	0	ID=cds-WP_234943865.1;Parent=gene-RAF_RS09875;Dbxref=GenBank:WP_234943865.1;Name=WP_234943865.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09875;product=hypothetical protein;protein_id=WP_234943865.1;transl_table=11
NC_012633.1	RefSeq	gene	705224	705469	.	+	.	ID=gene-RAF_RS03720;Name=RAF_RS03720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03720
NC_012633.1	Protein Homology	CDS	705224	705469	.	+	0	ID=cds-WP_041471878.1;Parent=gene-RAF_RS03720;Dbxref=GenBank:WP_041471878.1;Name=WP_041471878.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770231.1;locus_tag=RAF_RS03720;product=hypothetical protein;protein_id=WP_041471878.1;transl_table=11
NC_012633.1	RefSeq	gene	705927	706346	.	+	.	ID=gene-RAF_RS03725;Name=RAF_RS03725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03725;old_locus_tag=RAF_ORF0674
NC_012633.1	Protein Homology	CDS	705927	706346	.	+	0	ID=cds-WP_012150915.1;Parent=gene-RAF_RS03725;Dbxref=GenBank:WP_012150915.1;Name=WP_012150915.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442813.1;locus_tag=RAF_RS03725;product=Fe-S cluster assembly transcription factor;protein_id=WP_012150915.1;transl_table=11
NC_012633.1	RefSeq	gene	706343	707461	.	+	.	ID=gene-RAF_RS03730;Name=RAF_RS03730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03730;old_locus_tag=RAF_ORF0675
NC_012633.1	Protein Homology	CDS	706343	707461	.	+	0	ID=cds-WP_012719767.1;Parent=gene-RAF_RS03730;Dbxref=GenBank:WP_012719767.1;Name=WP_012719767.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926319.1;locus_tag=RAF_RS03730;product=cysteine desulfurase family protein;protein_id=WP_012719767.1;transl_table=11
NC_012633.1	RefSeq	gene	707564	708796	.	+	.	ID=gene-RAF_RS03735;Name=RAF_RS03735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03735;old_locus_tag=RAF_ORF0676
NC_012633.1	Protein Homology	CDS	707564	708796	.	+	0	ID=cds-WP_012719768.1;Parent=gene-RAF_RS03735;Dbxref=GenBank:WP_012719768.1;Name=WP_012719768.1;Ontology_term=GO:0044571,GO:0030170,GO:0031071;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine desulfurase activity|0031071||IEA;go_process=[2Fe-2S] cluster assembly|0044571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977349.1;locus_tag=RAF_RS03735;product=IscS subfamily cysteine desulfurase;protein_id=WP_012719768.1;transl_table=11
NC_012633.1	RefSeq	gene	708948	709343	.	+	.	ID=gene-RAF_RS03740;Name=iscU;gbkey=Gene;gene=iscU;gene_biotype=protein_coding;locus_tag=RAF_RS03740;old_locus_tag=RAF_ORF0677
NC_012633.1	Protein Homology	CDS	708948	709343	.	+	0	ID=cds-WP_010977348.1;Parent=gene-RAF_RS03740;Dbxref=GenBank:WP_010977348.1;Name=WP_010977348.1;Ontology_term=GO:0016226,GO:0005198,GO:0005506,GO:0051536;gbkey=CDS;gene=iscU;go_function=structural molecule activity|0005198||IEA,iron ion binding|0005506||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599506.1;locus_tag=RAF_RS03740;product=Fe-S cluster assembly scaffold IscU;protein_id=WP_010977348.1;transl_table=11
NC_012633.1	RefSeq	gene	709347	709679	.	+	.	ID=gene-RAF_RS03745;Name=RAF_RS03745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03745;old_locus_tag=RAF_ORF0678
NC_012633.1	Protein Homology	CDS	709347	709679	.	+	0	ID=cds-WP_004998325.1;Parent=gene-RAF_RS03745;Dbxref=GenBank:WP_004998325.1;Name=WP_004998325.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442809.1;locus_tag=RAF_RS03745;product=iron-sulfur cluster assembly accessory protein;protein_id=WP_004998325.1;transl_table=11
NC_012633.1	RefSeq	gene	709709	709924	.	+	.	ID=gene-RAF_RS03750;Name=RAF_RS03750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03750
NC_012633.1	Protein Homology	CDS	709709	709924	.	+	0	ID=cds-WP_041471879.1;Parent=gene-RAF_RS03750;Dbxref=GenBank:WP_041471879.1;Name=WP_041471879.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273536.1;locus_tag=RAF_RS03750;product=hypothetical protein;protein_id=WP_041471879.1;transl_table=11
NC_012633.1	RefSeq	gene	710201	710380	.	-	.	ID=gene-RAF_RS03755;Name=RAF_RS03755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03755;old_locus_tag=RAF_ORF0679
NC_012633.1	Protein Homology	CDS	710201	710380	.	-	0	ID=cds-WP_012719769.1;Parent=gene-RAF_RS03755;Dbxref=GenBank:WP_012719769.1;Name=WP_012719769.1;Ontology_term=GO:0097367;gbkey=CDS;go_function=carbohydrate derivative binding|0097367||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014120870.1;locus_tag=RAF_RS03755;product=LysM peptidoglycan-binding domain-containing protein;protein_id=WP_012719769.1;transl_table=11
NC_012633.1	RefSeq	gene	710528	711811	.	+	.	ID=gene-RAF_RS03760;Name=RAF_RS03760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03760;old_locus_tag=RAF_ORF0680
NC_012633.1	Protein Homology	CDS	710528	711811	.	+	0	ID=cds-WP_012719770.1;Parent=gene-RAF_RS03760;Dbxref=GenBank:WP_012719770.1;Name=WP_012719770.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010422280.1;locus_tag=RAF_RS03760;product=APC family permease;protein_id=WP_012719770.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	711827	711939	.	+	.	ID=gene-RAF_RS08705;Name=RAF_RS08705;end_range=711939,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS08705;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	711827	711939	.	+	0	ID=cds-RAF_RS08705;Parent=gene-RAF_RS08705;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=711939,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442852.1;locus_tag=RAF_RS08705;partial=true;product=lytic transglycosylase domain-containing protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	711953	713791	.	+	.	ID=gene-RAF_RS03765;Name=RAF_RS03765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03765;old_locus_tag=RAF_ORF0681
NC_012633.1	Protein Homology	CDS	711953	713791	.	+	0	ID=cds-WP_012719771.1;Parent=gene-RAF_RS03765;Dbxref=GenBank:WP_012719771.1;Name=WP_012719771.1;Ontology_term=GO:0006508,GO:0004177,GO:0046872,GO:0070006,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=aminopeptidase activity|0004177||IEA,metal ion binding|0046872||IEA,metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719771.1;locus_tag=RAF_RS03765;product=aminopeptidase P family protein;protein_id=WP_012719771.1;transl_table=11
NC_012633.1	RefSeq	gene	713851	713922	.	+	.	ID=gene-RAF_RS03770;Name=RAF_RS03770;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS03770;old_locus_tag=RAF_RNA18
NC_012633.1	tRNAscan-SE	tRNA	713851	713922	.	+	.	ID=rna-RAF_RS03770;Parent=gene-RAF_RS03770;anticodon=(pos:713883..713885);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS03770;product=tRNA-Gln
NC_012633.1	tRNAscan-SE	exon	713851	713922	.	+	.	ID=exon-RAF_RS03770-1;Parent=rna-RAF_RS03770;anticodon=(pos:713883..713885);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS03770;product=tRNA-Gln
NC_012633.1	RefSeq	gene	714007	714083	.	-	.	ID=gene-RAF_RS03775;Name=RAF_RS03775;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS03775;old_locus_tag=RAF_RNA19
NC_012633.1	tRNAscan-SE	tRNA	714007	714083	.	-	.	ID=rna-RAF_RS03775;Parent=gene-RAF_RS03775;anticodon=(pos:complement(714047..714049));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS03775;product=tRNA-Arg
NC_012633.1	tRNAscan-SE	exon	714007	714083	.	-	.	ID=exon-RAF_RS03775-1;Parent=rna-RAF_RS03775;anticodon=(pos:complement(714047..714049));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS03775;product=tRNA-Arg
NC_012633.1	RefSeq	gene	714090	715073	.	-	.	ID=gene-RAF_RS03780;Name=RAF_RS03780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03780;old_locus_tag=RAF_ORF0682
NC_012633.1	Protein Homology	CDS	714090	715073	.	-	0	ID=cds-WP_041472024.1;Parent=gene-RAF_RS03780;Dbxref=GenBank:WP_041472024.1;Name=WP_041472024.1;Ontology_term=GO:0008299,GO:0004659,GO:0046872;gbkey=CDS;go_function=prenyltransferase activity|0004659||IEA,metal ion binding|0046872||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012148614.1;locus_tag=RAF_RS03780;product=polyprenyl synthetase family protein;protein_id=WP_041472024.1;transl_table=11
NC_012633.1	RefSeq	gene	715192	716850	.	-	.	ID=gene-RAF_RS03785;Name=RAF_RS03785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03785;old_locus_tag=RAF_ORF0683
NC_012633.1	Protein Homology	CDS	715192	716850	.	-	0	ID=cds-WP_012719773.1;Parent=gene-RAF_RS03785;Dbxref=GenBank:WP_012719773.1;Name=WP_012719773.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012262423.1;locus_tag=RAF_RS03785;product=hypothetical protein;protein_id=WP_012719773.1;transl_table=11
NC_012633.1	RefSeq	gene	717044	718549	.	-	.	ID=gene-RAF_RS03790;Name=tlc3;gbkey=Gene;gene=tlc3;gene_biotype=protein_coding;locus_tag=RAF_RS03790;old_locus_tag=RAF_ORF0684
NC_012633.1	Protein Homology	CDS	717044	718549	.	-	0	ID=cds-WP_012719774.1;Parent=gene-RAF_RS03790;Dbxref=GenBank:WP_012719774.1;Name=WP_012719774.1;gbkey=CDS;gene=tlc3;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599498.1;locus_tag=RAF_RS03790;product=nucleotide exchange transporter Tlc3;protein_id=WP_012719774.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	718618	718975	.	-	.	ID=gene-RAF_RS10600;Name=RAF_RS10600;end_range=718975,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10600;old_locus_tag=RAF_ORF0685;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	718618	718975	.	-	0	ID=cds-RAF_RS10600;Parent=gene-RAF_RS10600;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=718975,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597718.1;locus_tag=RAF_RS10600;partial=true;product=glycosyltransferase family 8 protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	719062	719241	.	+	.	ID=gene-RAF_RS08715;Name=RAF_RS08715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08715;old_locus_tag=RAF_ORF0687
NC_012633.1	Protein Homology	CDS	719062	719241	.	+	0	ID=cds-WP_234943938.1;Parent=gene-RAF_RS08715;Dbxref=GenBank:WP_234943938.1;Name=WP_234943938.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016629.5;locus_tag=RAF_RS08715;product=hypothetical protein;protein_id=WP_234943938.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	719238	719456	.	+	.	ID=gene-RAF_RS08720;Name=RAF_RS08720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS08720;pseudo=true
NC_012633.1	Protein Homology	CDS	719238	719456	.	+	0	ID=cds-RAF_RS08720;Parent=gene-RAF_RS08720;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362907.1;locus_tag=RAF_RS08720;product=transposase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	719584	720837	.	+	.	ID=gene-RAF_RS03810;Name=RAF_RS03810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03810;old_locus_tag=RAF_ORF0688
NC_012633.1	Protein Homology	CDS	719584	720837	.	+	0	ID=cds-WP_012719776.1;Parent=gene-RAF_RS03810;Dbxref=GenBank:WP_012719776.1;Name=WP_012719776.1;Ontology_term=GO:0006810,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442799.1;locus_tag=RAF_RS03810;product=AmpG family muropeptide MFS transporter;protein_id=WP_012719776.1;transl_table=11
NC_012633.1	RefSeq	gene	721309	721431	.	+	.	ID=gene-RAF_RS03815;Name=RAF_RS03815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03815
NC_012633.1	Protein Homology	CDS	721309	721431	.	+	0	ID=cds-WP_012150903.1;Parent=gene-RAF_RS03815;Dbxref=GenBank:WP_012150903.1;Name=WP_012150903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150903.1;locus_tag=RAF_RS03815;product=hypothetical protein;protein_id=WP_012150903.1;transl_table=11
NC_012633.1	RefSeq	gene	721432	722073	.	+	.	ID=gene-RAF_RS03820;Name=RAF_RS03820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03820;old_locus_tag=RAF_ORF0689
NC_012633.1	Protein Homology	CDS	721432	722073	.	+	0	ID=cds-WP_012719777.1;Parent=gene-RAF_RS03820;Dbxref=GenBank:WP_012719777.1;Name=WP_012719777.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014365715.1;locus_tag=RAF_RS03820;product=LysE/ArgO family amino acid transporter;protein_id=WP_012719777.1;transl_table=11
NC_012633.1	RefSeq	gene	722051	722725	.	+	.	ID=gene-RAF_RS03825;Name=RAF_RS03825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03825;old_locus_tag=RAF_ORF0690
NC_012633.1	Protein Homology	CDS	722051	722725	.	+	0	ID=cds-WP_041471881.1;Parent=gene-RAF_RS03825;Dbxref=GenBank:WP_041471881.1;Name=WP_041471881.1;Ontology_term=GO:0006780,GO:0006782,GO:0033014,GO:0004852;gbkey=CDS;go_function=uroporphyrinogen-III synthase activity|0004852||IEA;go_process=uroporphyrinogen III biosynthetic process|0006780||IEA,protoporphyrinogen IX biosynthetic process|0006782||IEA,tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150901.1;locus_tag=RAF_RS03825;product=uroporphyrinogen-III synthase;protein_id=WP_041471881.1;transl_table=11
NC_012633.1	RefSeq	gene	722709	723464	.	+	.	ID=gene-RAF_RS03830;Name=RAF_RS03830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03830;old_locus_tag=RAF_ORF0691
NC_012633.1	Protein Homology	CDS	722709	723464	.	+	0	ID=cds-WP_012719779.1;Parent=gene-RAF_RS03830;Dbxref=GenBank:WP_012719779.1;Name=WP_012719779.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273547.1;locus_tag=RAF_RS03830;product=palindromic element RPE2 domain-containing protein;protein_id=WP_012719779.1;transl_table=11
NC_012633.1	RefSeq	gene	723457	724461	.	+	.	ID=gene-RAF_RS03835;Name=RAF_RS03835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03835;old_locus_tag=RAF_ORF0692
NC_012633.1	Protein Homology	CDS	723457	724461	.	+	0	ID=cds-WP_012719780.1;Parent=gene-RAF_RS03835;Dbxref=GenBank:WP_012719780.1;Name=WP_012719780.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010886302.1;locus_tag=RAF_RS03835;product=tetratricopeptide repeat protein;protein_id=WP_012719780.1;transl_table=11
NC_012633.1	RefSeq	gene	724680	725399	.	-	.	ID=gene-RAF_RS03840;Name=RAF_RS03840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03840;old_locus_tag=RAF_ORF0693
NC_012633.1	Protein Homology	CDS	724680	725399	.	-	0	ID=cds-WP_012719781.1;Parent=gene-RAF_RS03840;Dbxref=GenBank:WP_012719781.1;Name=WP_012719781.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014120860.1;locus_tag=RAF_RS03840;product=alpha/beta hydrolase;protein_id=WP_012719781.1;transl_table=11
NC_012633.1	RefSeq	gene	725654	725767	.	+	.	ID=gene-RAF_RS10395;Name=RAF_RS10395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10395;old_locus_tag=RAF_ORF0694
NC_012633.1	Protein Homology	CDS	725654	725767	.	+	0	ID=cds-WP_014273549.1;Parent=gene-RAF_RS10395;Dbxref=GenBank:WP_014273549.1;Name=WP_014273549.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF016136.5;locus_tag=RAF_RS10395;product=type II toxin-antitoxin system RelB/DinJ family antitoxin;protein_id=WP_014273549.1;transl_table=11
NC_012633.1	RefSeq	gene	725791	725919	.	+	.	ID=gene-RAF_RS09360;Name=RAF_RS09360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09360
NC_012633.1	Protein Homology	CDS	725791	725919	.	+	0	ID=cds-WP_012262417.1;Parent=gene-RAF_RS09360;Dbxref=GenBank:WP_012262417.1;Name=WP_012262417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442884.1;locus_tag=RAF_RS09360;product=hypothetical protein;protein_id=WP_012262417.1;transl_table=11
NC_012633.1	RefSeq	gene	726118	726558	.	-	.	ID=gene-RAF_RS03855;Name=RAF_RS03855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03855;old_locus_tag=RAF_ORF0695
NC_012633.1	Protein Homology	CDS	726118	726558	.	-	0	ID=cds-WP_041472025.1;Parent=gene-RAF_RS03855;Dbxref=GenBank:WP_041472025.1;Name=WP_041472025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014014417.1;locus_tag=RAF_RS03855;product=host attachment protein;protein_id=WP_041472025.1;transl_table=11
NC_012633.1	RefSeq	gene	726623	727348	.	-	.	ID=gene-RAF_RS03860;Name=RAF_RS03860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03860;old_locus_tag=RAF_ORF0696
NC_012633.1	Protein Homology	CDS	726623	727348	.	-	0	ID=cds-WP_012719784.1;Parent=gene-RAF_RS03860;Dbxref=GenBank:WP_012719784.1;Name=WP_012719784.1;Ontology_term=GO:0008654,GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442879.1;locus_tag=RAF_RS03860;product=lysophospholipid acyltransferase family protein;protein_id=WP_012719784.1;transl_table=11
NC_012633.1	RefSeq	gene	727426	728418	.	+	.	ID=gene-RAF_RS03865;Name=trpS;gbkey=Gene;gene=trpS;gene_biotype=protein_coding;locus_tag=RAF_RS03865;old_locus_tag=RAF_ORF0697
NC_012633.1	Protein Homology	CDS	727426	728418	.	+	0	ID=cds-WP_012719785.1;Parent=gene-RAF_RS03865;Dbxref=GenBank:WP_012719785.1;Name=WP_012719785.1;Ontology_term=GO:0006436,GO:0000166,GO:0004830,GO:0005524;gbkey=CDS;gene=trpS;go_function=nucleotide binding|0000166||IEA,tryptophan-tRNA ligase activity|0004830||IEA,ATP binding|0005524||IEA;go_process=tryptophanyl-tRNA aminoacylation|0006436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190913.1;locus_tag=RAF_RS03865;product=tryptophan--tRNA ligase;protein_id=WP_012719785.1;transl_table=11
NC_012633.1	RefSeq	gene	728478	728567	.	+	.	ID=gene-RAF_RS03870;Name=RAF_RS03870;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS03870;old_locus_tag=RAF_RNA20
NC_012633.1	tRNAscan-SE	tRNA	728478	728567	.	+	.	ID=rna-RAF_RS03870;Parent=gene-RAF_RS03870;anticodon=(pos:728512..728514);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS03870;product=tRNA-Ser
NC_012633.1	tRNAscan-SE	exon	728478	728567	.	+	.	ID=exon-RAF_RS03870-1;Parent=rna-RAF_RS03870;anticodon=(pos:728512..728514);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS03870;product=tRNA-Ser
NC_012633.1	RefSeq	pseudogene	728583	728892	.	-	.	ID=gene-RAF_RS09885;Name=RAF_RS09885;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS09885;pseudo=true
NC_012633.1	Protein Homology	CDS	728583	728892	.	-	0	ID=cds-RAF_RS09885;Parent=gene-RAF_RS09885;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977329.1;locus_tag=RAF_RS09885;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	729049	729441	.	-	.	ID=gene-RAF_RS07875;Name=RAF_RS07875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07875
NC_012633.1	Protein Homology	CDS	729049	729441	.	-	0	ID=cds-WP_410524339.1;Parent=gene-RAF_RS07875;Dbxref=GenBank:WP_410524339.1;Name=WP_410524339.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025019.5;locus_tag=RAF_RS07875;product=DUF4143 domain-containing protein;protein_id=WP_410524339.1;transl_table=11
NC_012633.1	RefSeq	gene	729338	729553	.	-	.	ID=gene-RAF_RS03880;Name=RAF_RS03880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03880;old_locus_tag=RAF_ORF0698
NC_012633.1	Protein Homology	CDS	729338	729553	.	-	0	ID=cds-WP_410524340.1;Parent=gene-RAF_RS03880;Dbxref=GenBank:WP_410524340.1;Name=WP_410524340.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410786.1;locus_tag=RAF_RS03880;product=DUF4143 domain-containing protein;protein_id=WP_410524340.1;transl_table=11
NC_012633.1	RefSeq	gene	729735	730061	.	-	.	ID=gene-RAF_RS07880;Name=RAF_RS07880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07880
NC_012633.1	Protein Homology	CDS	729735	730061	.	-	0	ID=cds-WP_083762106.1;Parent=gene-RAF_RS07880;Dbxref=GenBank:WP_083762106.1;Name=WP_083762106.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024571.5;locus_tag=RAF_RS07880;product=AAA family ATPase;protein_id=WP_083762106.1;transl_table=11
NC_012633.1	RefSeq	gene	730349	731404	.	-	.	ID=gene-RAF_RS03885;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=RAF_RS03885;old_locus_tag=RAF_ORF0699
NC_012633.1	Protein Homology	CDS	730349	731404	.	-	0	ID=cds-WP_012719787.1;Parent=gene-RAF_RS03885;Dbxref=GenBank:WP_012719787.1;Name=WP_012719787.1;Ontology_term=GO:0033014,GO:0004418;gbkey=CDS;gene=hemC;go_function=hydroxymethylbilane synthase activity|0004418||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004998284.1;locus_tag=RAF_RS03885;product=hydroxymethylbilane synthase;protein_id=WP_012719787.1;transl_table=11
NC_012633.1	RefSeq	gene	731401	732390	.	-	.	ID=gene-RAF_RS03890;Name=RAF_RS03890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03890;old_locus_tag=RAF_ORF0700
NC_012633.1	Protein Homology	CDS	731401	732390	.	-	0	ID=cds-WP_012719788.1;Parent=gene-RAF_RS03890;Dbxref=GenBank:WP_012719788.1;Name=WP_012719788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409282.1;locus_tag=RAF_RS03890;product=LD-carboxypeptidase;protein_id=WP_012719788.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	732371	734885	.	-	.	ID=gene-RAF_RS03895;Name=RAF_RS03895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03895;old_locus_tag=RAF_ORF0701;pseudo=true
NC_012633.1	Protein Homology	CDS	732371	734885	.	-	0	ID=cds-RAF_RS03895;Parent=gene-RAF_RS03895;Note=frameshifted;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599494.1;locus_tag=RAF_RS03895;product=sodium:solute symporter family transporter;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	735584	736099	.	-	.	ID=gene-RAF_RS03905;Name=RAF_RS03905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03905;old_locus_tag=RAF_ORF0702
NC_012633.1	Protein Homology	CDS	735584	736099	.	-	0	ID=cds-WP_012719790.1;Parent=gene-RAF_RS03905;Dbxref=GenBank:WP_012719790.1;Name=WP_012719790.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719790.1;locus_tag=RAF_RS03905;product=hypothetical protein;protein_id=WP_012719790.1;transl_table=11
NC_012633.1	RefSeq	gene	736117	736455	.	-	.	ID=gene-RAF_RS03910;Name=RAF_RS03910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03910;old_locus_tag=RAF_ORF0703
NC_012633.1	Protein Homology	CDS	736117	736455	.	-	0	ID=cds-WP_012719791.1;Parent=gene-RAF_RS03910;Dbxref=GenBank:WP_012719791.1;Name=WP_012719791.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004998267.1;locus_tag=RAF_RS03910;product=hypothetical protein;protein_id=WP_012719791.1;transl_table=11
NC_012633.1	RefSeq	gene	736776	737783	.	-	.	ID=gene-RAF_RS03915;Name=RAF_RS03915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03915;old_locus_tag=RAF_ORF0704
NC_012633.1	Protein Homology	CDS	736776	737783	.	-	0	ID=cds-WP_012719792.1;Parent=gene-RAF_RS03915;Dbxref=GenBank:WP_012719792.1;Name=WP_012719792.1;Ontology_term=GO:0016226,GO:0016740,GO:0005739;gbkey=CDS;go_component=mitochondrion|0005739||IEA;go_function=transferase activity|0016740||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012262436.1;locus_tag=RAF_RS03915;product=YgfZ/GcvT domain-containing protein;protein_id=WP_012719792.1;transl_table=11
NC_012633.1	RefSeq	gene	737896	738687	.	+	.	ID=gene-RAF_RS03920;Name=RAF_RS03920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03920;old_locus_tag=RAF_ORF0705
NC_012633.1	Protein Homology	CDS	737896	738687	.	+	0	ID=cds-WP_014410794.1;Parent=gene-RAF_RS03920;Dbxref=GenBank:WP_014410794.1;Name=WP_014410794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004998262.1;locus_tag=RAF_RS03920;product=RMD1 family protein;protein_id=WP_014410794.1;transl_table=11
NC_012633.1	RefSeq	gene	738697	739542	.	+	.	ID=gene-RAF_RS03925;Name=RAF_RS03925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03925;old_locus_tag=RAF_ORF0706
NC_012633.1	Protein Homology	CDS	738697	739542	.	+	0	ID=cds-WP_012719794.1;Parent=gene-RAF_RS03925;Dbxref=GenBank:WP_012719794.1;Name=WP_012719794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442864.1;locus_tag=RAF_RS03925;product=ribonuclease D;protein_id=WP_012719794.1;transl_table=11
NC_012633.1	RefSeq	gene	739594	739821	.	-	.	ID=gene-RAF_RS03930;Name=RAF_RS03930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03930
NC_012633.1	Protein Homology	CDS	739594	739821	.	-	0	ID=cds-WP_004998256.1;Parent=gene-RAF_RS03930;Dbxref=GenBank:WP_004998256.1;Name=WP_004998256.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004998256.1;locus_tag=RAF_RS03930;product=hypothetical protein;protein_id=WP_004998256.1;transl_table=11
NC_012633.1	RefSeq	gene	739918	740439	.	-	.	ID=gene-RAF_RS03935;Name=RAF_RS03935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03935;old_locus_tag=RAF_ORF0707
NC_012633.1	Protein Homology	CDS	739918	740439	.	-	0	ID=cds-WP_041471883.1;Parent=gene-RAF_RS03935;Dbxref=GenBank:WP_041471883.1;Name=WP_041471883.1;Ontology_term=GO:0006730,GO:0030272;gbkey=CDS;go_function=5-formyltetrahydrofolate cyclo-ligase activity|0030272||IEA;go_process=one-carbon metabolic process|0006730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004998253.1;locus_tag=RAF_RS03935;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_041471883.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	740468	740626	.	-	.	ID=gene-RAF_RS10765;Name=RAF_RS10765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10765;partial=true;pseudo=true;start_range=.,740468
NC_012633.1	Protein Homology	CDS	740468	740626	.	-	0	ID=cds-RAF_RS10765;Parent=gene-RAF_RS10765;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362501.1;locus_tag=RAF_RS10765;partial=true;product=MFS transporter;pseudo=true;start_range=.,740468;transl_table=11
NC_012633.1	RefSeq	gene	740729	742108	.	-	.	ID=gene-RAF_RS03940;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=RAF_RS03940;old_locus_tag=RAF_ORF0708
NC_012633.1	Protein Homology	CDS	740729	742108	.	-	0	ID=cds-WP_012719796.1;Parent=gene-RAF_RS03940;Dbxref=GenBank:WP_012719796.1;Name=WP_012719796.1;Ontology_term=GO:0004148,GO:0050660;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase activity|0004148||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442860.1;locus_tag=RAF_RS03940;product=dihydrolipoyl dehydrogenase;protein_id=WP_012719796.1;transl_table=11
NC_012633.1	RefSeq	gene	742261	742980	.	-	.	ID=gene-RAF_RS03945;Name=RAF_RS03945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03945;old_locus_tag=RAF_ORF0709
NC_012633.1	Protein Homology	CDS	742261	742980	.	-	0	ID=cds-WP_268738942.1;Parent=gene-RAF_RS03945;Dbxref=GenBank:WP_268738942.1;Name=WP_268738942.1;Ontology_term=GO:0008757;gbkey=CDS;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597689.1;locus_tag=RAF_RS03945;product=methyltransferase domain-containing protein;protein_id=WP_268738942.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	743012	743467	.	-	.	ID=gene-RAF_RS03950;Name=RAF_RS03950;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03950;old_locus_tag=RAF_ORF0710;pseudo=true
NC_012633.1	Protein Homology	CDS	743012	743467	.	-	0	ID=cds-RAF_RS03950;Parent=gene-RAF_RS03950;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736876.1;locus_tag=RAF_RS03950;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	743559	744320	.	-	.	ID=gene-RAF_RS03955;Name=RAF_RS03955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03955;old_locus_tag=RAF_ORF0711
NC_012633.1	Protein Homology	CDS	743559	744320	.	-	0	ID=cds-WP_083762108.1;Parent=gene-RAF_RS03955;Dbxref=GenBank:WP_083762108.1;Name=WP_083762108.1;Ontology_term=GO:0009307,GO:0009007;gbkey=CDS;go_function=site-specific DNA-methyltransferase (adenine-specific) activity|0009007||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926294.1;locus_tag=RAF_RS03955;product=Dam family site-specific DNA-(adenine-N6)-methyltransferase;protein_id=WP_083762108.1;transl_table=11
NC_012633.1	RefSeq	gene	744398	744589	.	-	.	ID=gene-RAF_RS03960;Name=RAF_RS03960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03960
NC_012633.1	Protein Homology	CDS	744398	744589	.	-	0	ID=cds-WP_148206967.1;Parent=gene-RAF_RS03960;Dbxref=GenBank:WP_148206967.1;Name=WP_148206967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977310.1;locus_tag=RAF_RS03960;product=hypothetical protein;protein_id=WP_148206967.1;transl_table=11
NC_012633.1	RefSeq	gene	744570	745271	.	-	.	ID=gene-RAF_RS03965;Name=RAF_RS03965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03965;old_locus_tag=RAF_ORF0712
NC_012633.1	Protein Homology	CDS	744570	745271	.	-	0	ID=cds-WP_012719800.1;Parent=gene-RAF_RS03965;Dbxref=GenBank:WP_012719800.1;Name=WP_012719800.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: protein motif:HMM:NF033547.1;locus_tag=RAF_RS03965;product=IS1595 family transposase;protein_id=WP_012719800.1;transl_table=11
NC_012633.1	RefSeq	gene	745340	745447	.	-	.	ID=gene-RAF_RS10770;Name=RAF_RS10770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10770
NC_012633.1	Protein Homology	CDS	745340	745447	.	-	0	ID=cds-WP_146709197.1;Parent=gene-RAF_RS10770;Dbxref=GenBank:WP_146709197.1;Name=WP_146709197.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024170.5;locus_tag=RAF_RS10770;product=transposase;protein_id=WP_146709197.1;transl_table=11
NC_012633.1	RefSeq	gene	745578	746063	.	-	.	ID=gene-RAF_RS03970;Name=RAF_RS03970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03970;old_locus_tag=RAF_ORF0713
NC_012633.1	Protein Homology	CDS	745578	746063	.	-	0	ID=cds-WP_012719801.1;Parent=gene-RAF_RS03970;Dbxref=GenBank:WP_012719801.1;Name=WP_012719801.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442853.1;locus_tag=RAF_RS03970;product=DUF2532 domain-containing protein;protein_id=WP_012719801.1;transl_table=11
NC_012633.1	RefSeq	gene	746068	746910	.	-	.	ID=gene-RAF_RS03975;Name=RAF_RS03975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03975;old_locus_tag=RAF_ORF0714
NC_012633.1	Protein Homology	CDS	746068	746910	.	-	0	ID=cds-WP_012719802.1;Parent=gene-RAF_RS03975;Dbxref=GenBank:WP_012719802.1;Name=WP_012719802.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442852.1;locus_tag=RAF_RS03975;product=lytic transglycosylase domain-containing protein;protein_id=WP_012719802.1;transl_table=11
NC_012633.1	RefSeq	gene	747205	747465	.	-	.	ID=gene-RAF_RS03980;Name=RAF_RS03980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03980;old_locus_tag=RAF_ORF0715
NC_012633.1	Protein Homology	CDS	747205	747465	.	-	0	ID=cds-WP_012719803.1;Parent=gene-RAF_RS03980;Dbxref=GenBank:WP_012719803.1;Name=WP_012719803.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719803.1;locus_tag=RAF_RS03980;product=hypothetical protein;protein_id=WP_012719803.1;transl_table=11
NC_012633.1	RefSeq	gene	747467	747676	.	-	.	ID=gene-RAF_RS03985;Name=RAF_RS03985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03985
NC_012633.1	Protein Homology	CDS	747467	747676	.	-	0	ID=cds-WP_004998229.1;Parent=gene-RAF_RS03985;Dbxref=GenBank:WP_004998229.1;Name=WP_004998229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419842.1;locus_tag=RAF_RS03985;product=hypothetical protein;protein_id=WP_004998229.1;transl_table=11
NC_012633.1	RefSeq	gene	748337	748462	.	+	.	ID=gene-RAF_RS03990;Name=ykgO;gbkey=Gene;gene=ykgO;gene_biotype=protein_coding;locus_tag=RAF_RS03990;old_locus_tag=RAF_ORF0716
NC_012633.1	Protein Homology	CDS	748337	748462	.	+	0	ID=cds-WP_004998227.1;Parent=gene-RAF_RS03990;Dbxref=GenBank:WP_004998227.1;Name=WP_004998227.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=ykgO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012177066.1;locus_tag=RAF_RS03990;product=type B 50S ribosomal protein L36;protein_id=WP_004998227.1;transl_table=11
NC_012633.1	RefSeq	gene	748671	749432	.	+	.	ID=gene-RAF_RS03995;Name=RAF_RS03995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03995;old_locus_tag=RAF_ORF0717
NC_012633.1	Protein Homology	CDS	748671	749432	.	+	0	ID=cds-WP_012719804.1;Parent=gene-RAF_RS03995;Dbxref=GenBank:WP_012719804.1;Name=WP_012719804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442847.1;locus_tag=RAF_RS03995;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=WP_012719804.1;transl_table=11
NC_012633.1	RefSeq	gene	749429	750175	.	+	.	ID=gene-RAF_RS04000;Name=RAF_RS04000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04000;old_locus_tag=RAF_ORF0718
NC_012633.1	Protein Homology	CDS	749429	750175	.	+	0	ID=cds-WP_004998219.1;Parent=gene-RAF_RS04000;Dbxref=GenBank:WP_004998219.1;Name=WP_004998219.1;Ontology_term=GO:0006048,GO:0003977;gbkey=CDS;go_function=UDP-N-acetylglucosamine diphosphorylase activity|0003977||IEA;go_process=UDP-N-acetylglucosamine biosynthetic process|0006048||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442846.1;locus_tag=RAF_RS04000;product=sugar phosphate nucleotidyltransferase;protein_id=WP_004998219.1;transl_table=11
NC_012633.1	RefSeq	gene	750429	750516	.	+	.	ID=gene-RAF_RS04005;Name=RAF_RS04005;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS04005;old_locus_tag=RAF_RNA21
NC_012633.1	tRNAscan-SE	tRNA	750429	750516	.	+	.	ID=rna-RAF_RS04005;Parent=gene-RAF_RS04005;anticodon=(pos:750463..750465);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS04005;product=tRNA-Ser
NC_012633.1	tRNAscan-SE	exon	750429	750516	.	+	.	ID=exon-RAF_RS04005-1;Parent=rna-RAF_RS04005;anticodon=(pos:750463..750465);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS04005;product=tRNA-Ser
NC_012633.1	RefSeq	gene	750657	750881	.	-	.	ID=gene-RAF_RS09895;Name=RAF_RS09895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09895;old_locus_tag=RAF_ORF0719
NC_012633.1	Protein Homology	CDS	750657	750881	.	-	0	ID=cds-WP_004998215.1;Parent=gene-RAF_RS09895;Dbxref=GenBank:WP_004998215.1;Name=WP_004998215.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926352.1;locus_tag=RAF_RS09895;product=hypothetical protein;protein_id=WP_004998215.1;transl_table=11
NC_012633.1	RefSeq	gene	751320	751445	.	+	.	ID=gene-RAF_RS10400;Name=RAF_RS10400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10400
NC_012633.1	GeneMarkS-2+	CDS	751320	751445	.	+	0	ID=cds-WP_268738925.1;Parent=gene-RAF_RS10400;Dbxref=GenBank:WP_268738925.1;Name=WP_268738925.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10400;product=hypothetical protein;protein_id=WP_268738925.1;transl_table=11
NC_012633.1	RefSeq	gene	752169	752351	.	+	.	ID=gene-RAF_RS10605;Name=RAF_RS10605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10605
NC_012633.1	Protein Homology	CDS	752169	752351	.	+	0	ID=cds-WP_083762146.1;Parent=gene-RAF_RS10605;Dbxref=GenBank:WP_083762146.1;Name=WP_083762146.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419847.1;locus_tag=RAF_RS10605;product=hypothetical protein;protein_id=WP_083762146.1;transl_table=11
NC_012633.1	RefSeq	gene	752722	753039	.	-	.	ID=gene-RAF_RS04020;Name=RAF_RS04020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04020;old_locus_tag=RAF_ORF0720
NC_012633.1	Protein Homology	CDS	752722	753039	.	-	0	ID=cds-WP_012719805.1;Parent=gene-RAF_RS04020;Dbxref=GenBank:WP_012719805.1;Name=WP_012719805.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926355.1;locus_tag=RAF_RS04020;product=hypothetical protein;protein_id=WP_012719805.1;transl_table=11
NC_012633.1	RefSeq	gene	753026	753334	.	-	.	ID=gene-RAF_RS04025;Name=RAF_RS04025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04025;old_locus_tag=RAF_ORF0721
NC_012633.1	Protein Homology	CDS	753026	753334	.	-	0	ID=cds-WP_041472026.1;Parent=gene-RAF_RS04025;Dbxref=GenBank:WP_041472026.1;Name=WP_041472026.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926356.1;locus_tag=RAF_RS04025;product=MazG nucleotide pyrophosphohydrolase domain-containing protein;protein_id=WP_041472026.1;transl_table=11
NC_012633.1	RefSeq	gene	753469	753756	.	-	.	ID=gene-RAF_RS04030;Name=RAF_RS04030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04030;old_locus_tag=RAF_ORF0722
NC_012633.1	Protein Homology	CDS	753469	753756	.	-	0	ID=cds-WP_041471884.1;Parent=gene-RAF_RS04030;Dbxref=GenBank:WP_041471884.1;Name=WP_041471884.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977401.1;locus_tag=RAF_RS04030;product=GNAT family N-acetyltransferase;protein_id=WP_041471884.1;transl_table=11
NC_012633.1	RefSeq	gene	753821	753949	.	+	.	ID=gene-RAF_RS10405;Name=RAF_RS10405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10405
NC_012633.1	GeneMarkS-2+	CDS	753821	753949	.	+	0	ID=cds-WP_267878479.1;Parent=gene-RAF_RS10405;Dbxref=GenBank:WP_267878479.1;Name=WP_267878479.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10405;product=hypothetical protein;protein_id=WP_267878479.1;transl_table=11
NC_012633.1	RefSeq	gene	754330	754485	.	+	.	ID=gene-RAF_RS09115;Name=RAF_RS09115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09115;old_locus_tag=RAF_ORF0723
NC_012633.1	Protein Homology	CDS	754330	754485	.	+	0	ID=cds-WP_162465576.1;Parent=gene-RAF_RS09115;Dbxref=GenBank:WP_162465576.1;Name=WP_162465576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419849.1;locus_tag=RAF_RS09115;product=hypothetical protein;protein_id=WP_162465576.1;transl_table=11
NC_012633.1	RefSeq	gene	754959	755186	.	+	.	ID=gene-RAF_RS04040;Name=RAF_RS04040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04040
NC_012633.1	Protein Homology	CDS	754959	755186	.	+	0	ID=cds-WP_041471885.1;Parent=gene-RAF_RS04040;Dbxref=GenBank:WP_041471885.1;Name=WP_041471885.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977405.1;locus_tag=RAF_RS04040;product=hypothetical protein;protein_id=WP_041471885.1;transl_table=11
NC_012633.1	RefSeq	gene	755189	755761	.	-	.	ID=gene-RAF_RS04045;Name=RAF_RS04045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04045;old_locus_tag=RAF_ORF0724
NC_012633.1	Protein Homology	CDS	755189	755761	.	-	0	ID=cds-WP_012719809.1;Parent=gene-RAF_RS04045;Dbxref=GenBank:WP_012719809.1;Name=WP_012719809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410810.1;locus_tag=RAF_RS04045;product=hypothetical protein;protein_id=WP_012719809.1;transl_table=11
NC_012633.1	RefSeq	gene	756107	756301	.	-	.	ID=gene-RAF_RS09370;Name=RAF_RS09370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09370;old_locus_tag=RAF_ORF0725
NC_012633.1	Protein Homology	CDS	756107	756301	.	-	0	ID=cds-WP_233417435.1;Parent=gene-RAF_RS09370;Dbxref=GenBank:WP_233417435.1;Name=WP_233417435.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004998212.1;locus_tag=RAF_RS09370;product=N-acetylglucosamine kinase;protein_id=WP_233417435.1;transl_table=11
NC_012633.1	RefSeq	gene	756624	756707	.	-	.	ID=gene-RAF_RS10775;Name=RAF_RS10775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10775
NC_012633.1	Protein Homology	CDS	756624	756707	.	-	0	ID=cds-WP_410524341.1;Parent=gene-RAF_RS10775;Dbxref=GenBank:WP_410524341.1;Name=WP_410524341.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017539.5;locus_tag=RAF_RS10775;product=NTPase;protein_id=WP_410524341.1;transl_table=11
NC_012633.1	RefSeq	gene	757598	758974	.	+	.	ID=gene-RAF_RS04060;Name=nuoN;gbkey=Gene;gene=nuoN;gene_biotype=protein_coding;locus_tag=RAF_RS04060;old_locus_tag=RAF_ORF0726
NC_012633.1	Protein Homology	CDS	757598	758974	.	+	0	ID=cds-WP_012719810.1;Parent=gene-RAF_RS04060;Dbxref=GenBank:WP_012719810.1;Name=WP_012719810.1;gbkey=CDS;gene=nuoN;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190976.1;locus_tag=RAF_RS04060;product=NADH-quinone oxidoreductase subunit NuoN;protein_id=WP_012719810.1;transl_table=11
NC_012633.1	RefSeq	gene	758961	760502	.	-	.	ID=gene-RAF_RS04065;Name=RAF_RS04065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04065;old_locus_tag=RAF_ORF0727
NC_012633.1	Protein Homology	CDS	758961	760502	.	-	0	ID=cds-WP_012719811.1;Parent=gene-RAF_RS04065;Dbxref=GenBank:WP_012719811.1;Name=WP_012719811.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442289.1;locus_tag=RAF_RS04065;product=hypothetical protein;protein_id=WP_012719811.1;transl_table=11
NC_012633.1	RefSeq	gene	760591	761583	.	-	.	ID=gene-RAF_RS04070;Name=hemB;gbkey=Gene;gene=hemB;gene_biotype=protein_coding;locus_tag=RAF_RS04070;old_locus_tag=RAF_ORF0728
NC_012633.1	Protein Homology	CDS	760591	761583	.	-	0	ID=cds-WP_041472028.1;Parent=gene-RAF_RS04070;Dbxref=GenBank:WP_041472028.1;Name=WP_041472028.1;Ontology_term=GO:0033014,GO:0003824,GO:0004655,GO:0046872;gbkey=CDS;gene=hemB;go_function=catalytic activity|0003824||IEA,porphobilinogen synthase activity|0004655||IEA,metal ion binding|0046872||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917560.1;locus_tag=RAF_RS04070;product=porphobilinogen synthase;protein_id=WP_041472028.1;transl_table=11
NC_012633.1	RefSeq	gene	761818	762198	.	+	.	ID=gene-RAF_RS09380;Name=RAF_RS09380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09380
NC_012633.1	GeneMarkS-2+	CDS	761818	762198	.	+	0	ID=cds-WP_200858166.1;Parent=gene-RAF_RS09380;Dbxref=GenBank:WP_200858166.1;Name=WP_200858166.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09380;product=hypothetical protein;protein_id=WP_200858166.1;transl_table=11
NC_012633.1	RefSeq	gene	762185	762430	.	+	.	ID=gene-RAF_RS09385;Name=RAF_RS09385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09385
NC_012633.1	GeneMarkS-2+	CDS	762185	762430	.	+	0	ID=cds-WP_041471887.1;Parent=gene-RAF_RS09385;Dbxref=GenBank:WP_041471887.1;Name=WP_041471887.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09385;product=hypothetical protein;protein_id=WP_041471887.1;transl_table=11
NC_012633.1	RefSeq	gene	762417	762695	.	+	.	ID=gene-RAF_RS09390;Name=RAF_RS09390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09390
NC_012633.1	Protein Homology	CDS	762417	762695	.	+	0	ID=cds-WP_041472029.1;Parent=gene-RAF_RS09390;Dbxref=GenBank:WP_041472029.1;Name=WP_041472029.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150976.1;locus_tag=RAF_RS09390;product=hypothetical protein;protein_id=WP_041472029.1;transl_table=11
NC_012633.1	RefSeq	gene	762781	764727	.	-	.	ID=gene-RAF_RS04090;Name=RAF_RS04090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04090;old_locus_tag=RAF_ORF0732
NC_012633.1	Protein Homology	CDS	762781	764727	.	-	0	ID=cds-WP_012719813.1;Parent=gene-RAF_RS04090;Dbxref=GenBank:WP_012719813.1;Name=WP_012719813.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597830.1;locus_tag=RAF_RS04090;product=primosomal protein N';protein_id=WP_012719813.1;transl_table=11
NC_012633.1	RefSeq	gene	764791	765366	.	+	.	ID=gene-RAF_RS04095;Name=RAF_RS04095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04095;old_locus_tag=RAF_ORF0733
NC_012633.1	Protein Homology	CDS	764791	765366	.	+	0	ID=cds-WP_012719814.1;Parent=gene-RAF_RS04095;Dbxref=GenBank:WP_012719814.1;Name=WP_012719814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442293.1;locus_tag=RAF_RS04095;product=UbiX family flavin prenyltransferase;protein_id=WP_012719814.1;transl_table=11
NC_012633.1	RefSeq	gene	765356	765496	.	+	.	ID=gene-RAF_RS09395;Name=RAF_RS09395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09395
NC_012633.1	Protein Homology	CDS	765356	765496	.	+	0	ID=cds-WP_014273580.1;Parent=gene-RAF_RS09395;Dbxref=GenBank:WP_014273580.1;Name=WP_014273580.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442294.1;locus_tag=RAF_RS09395;product=hypothetical protein;protein_id=WP_014273580.1;transl_table=11
NC_012633.1	RefSeq	gene	765733	767217	.	+	.	ID=gene-RAF_RS04100;Name=RAF_RS04100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04100;old_locus_tag=RAF_ORF0734
NC_012633.1	Protein Homology	CDS	765733	767217	.	+	0	ID=cds-WP_012719815.1;Parent=gene-RAF_RS04100;Dbxref=GenBank:WP_012719815.1;Name=WP_012719815.1;Ontology_term=GO:0006260,GO:0003678;gbkey=CDS;go_function=DNA helicase activity|0003678||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442295.1;locus_tag=RAF_RS04100;product=replicative DNA helicase;protein_id=WP_012719815.1;transl_table=11
NC_012633.1	RefSeq	gene	767380	767586	.	-	.	ID=gene-RAF_RS04105;Name=RAF_RS04105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04105
NC_012633.1	Protein Homology	CDS	767380	767586	.	-	0	ID=cds-WP_041471888.1;Parent=gene-RAF_RS04105;Dbxref=GenBank:WP_041471888.1;Name=WP_041471888.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410820.1;locus_tag=RAF_RS04105;product=hypothetical protein;protein_id=WP_041471888.1;transl_table=11
NC_012633.1	RefSeq	gene	767741	768052	.	-	.	ID=gene-RAF_RS04110;Name=RAF_RS04110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04110
NC_012633.1	Protein Homology	CDS	767741	768052	.	-	0	ID=cds-WP_083762109.1;Parent=gene-RAF_RS04110;Dbxref=GenBank:WP_083762109.1;Name=WP_083762109.1;Ontology_term=GO:0003333;gbkey=CDS;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830832.1;locus_tag=RAF_RS04110;product=aromatic amino acid transport family protein;protein_id=WP_083762109.1;transl_table=11
NC_012633.1	RefSeq	gene	768589	768693	.	-	.	ID=gene-RAF_RS10780;Name=RAF_RS10780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10780
NC_012633.1	Protein Homology	CDS	768589	768693	.	-	0	ID=cds-WP_012150982.1;Parent=gene-RAF_RS10780;Dbxref=GenBank:WP_012150982.1;Name=WP_012150982.1;Ontology_term=GO:0003333;gbkey=CDS;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: protein motif:HMM:NF015197.5;locus_tag=RAF_RS10780;product=aromatic amino acid transport family protein;protein_id=WP_012150982.1;transl_table=11
NC_012633.1	RefSeq	gene	769085	769777	.	+	.	ID=gene-RAF_RS04120;Name=RAF_RS04120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04120;old_locus_tag=RAF_ORF0736
NC_012633.1	Protein Homology	CDS	769085	769777	.	+	0	ID=cds-WP_012719817.1;Parent=gene-RAF_RS04120;Dbxref=GenBank:WP_012719817.1;Name=WP_012719817.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982,GO:0140098;gbkey=CDS;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA,catalytic activity%2C acting on RNA|0140098||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012262460.1;locus_tag=RAF_RS04120;product=pseudouridine synthase;protein_id=WP_012719817.1;transl_table=11
NC_012633.1	RefSeq	gene	769824	772697	.	+	.	ID=gene-RAF_RS04125;Name=RAF_RS04125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04125;old_locus_tag=RAF_ORF0737
NC_012633.1	Protein Homology	CDS	769824	772697	.	+	0	ID=cds-WP_012719818.1;Parent=gene-RAF_RS04125;Dbxref=GenBank:WP_012719818.1;Name=WP_012719818.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362373.1;locus_tag=RAF_RS04125;product=pentapeptide repeat-containing protein;protein_id=WP_012719818.1;transl_table=11
NC_012633.1	RefSeq	gene	772702	773439	.	+	.	ID=gene-RAF_RS04130;Name=RAF_RS04130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04130;old_locus_tag=RAF_ORF0738
NC_012633.1	Protein Homology	CDS	772702	773439	.	+	0	ID=cds-WP_012719819.1;Parent=gene-RAF_RS04130;Dbxref=GenBank:WP_012719819.1;Name=WP_012719819.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442301.1;locus_tag=RAF_RS04130;product=RsmD family RNA methyltransferase;protein_id=WP_012719819.1;transl_table=11
NC_012633.1	RefSeq	gene	773585	774919	.	+	.	ID=gene-RAF_RS04135;Name=radA;gbkey=Gene;gene=radA;gene_biotype=protein_coding;locus_tag=RAF_RS04135;old_locus_tag=RAF_ORF0739
NC_012633.1	Protein Homology	CDS	773585	774919	.	+	0	ID=cds-WP_012719820.1;Parent=gene-RAF_RS04135;Dbxref=GenBank:WP_012719820.1;Name=WP_012719820.1;Ontology_term=GO:0006281,GO:0003684,GO:0005524;gbkey=CDS;gene=radA;go_function=damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442302.1;locus_tag=RAF_RS04135;product=DNA repair protein RadA;protein_id=WP_012719820.1;transl_table=11
NC_012633.1	RefSeq	gene	774916	775230	.	+	.	ID=gene-RAF_RS04140;Name=RAF_RS04140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04140;old_locus_tag=RAF_ORF0740
NC_012633.1	Protein Homology	CDS	774916	775230	.	+	0	ID=cds-WP_012719821.1;Parent=gene-RAF_RS04140;Dbxref=GenBank:WP_012719821.1;Name=WP_012719821.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150987.1;locus_tag=RAF_RS04140;product=hypothetical protein;protein_id=WP_012719821.1;transl_table=11
NC_012633.1	RefSeq	gene	775351	776064	.	+	.	ID=gene-RAF_RS04145;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=RAF_RS04145;old_locus_tag=RAF_ORF0741
NC_012633.1	Protein Homology	CDS	775351	776064	.	+	0	ID=cds-WP_012719822.1;Parent=gene-RAF_RS04145;Dbxref=GenBank:WP_012719822.1;Name=WP_012719822.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677;gbkey=CDS;gene=recO;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442304.1;locus_tag=RAF_RS04145;product=DNA repair protein RecO;protein_id=WP_012719822.1;transl_table=11
NC_012633.1	RefSeq	gene	776140	776376	.	+	.	ID=gene-RAF_RS04150;Name=RAF_RS04150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04150
NC_012633.1	Protein Homology	CDS	776140	776376	.	+	0	ID=cds-WP_041471889.1;Parent=gene-RAF_RS04150;Dbxref=GenBank:WP_041471889.1;Name=WP_041471889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409330.1;locus_tag=RAF_RS04150;product=hypothetical protein;protein_id=WP_041471889.1;transl_table=11
NC_012633.1	RefSeq	gene	776513	777211	.	+	.	ID=gene-RAF_RS04155;Name=tsaB;gbkey=Gene;gene=tsaB;gene_biotype=protein_coding;locus_tag=RAF_RS04155;old_locus_tag=RAF_ORF0742
NC_012633.1	Protein Homology	CDS	776513	777211	.	+	0	ID=cds-WP_012719823.1;Parent=gene-RAF_RS04155;Dbxref=GenBank:WP_012719823.1;Name=WP_012719823.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaB;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770260.1;locus_tag=RAF_RS04155;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB;protein_id=WP_012719823.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	777262	778524	.	-	.	ID=gene-RAF_RS04160;Name=RAF_RS04160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04160;old_locus_tag=RAF_ORF0743;pseudo=true
NC_012633.1	Protein Homology	CDS	777262	778524	.	-	0	ID=cds-RAF_RS04160;Parent=gene-RAF_RS04160;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004998171.1;locus_tag=RAF_RS04160;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	778883	781378	.	-	.	ID=gene-RAF_RS04165;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=RAF_RS04165;old_locus_tag=RAF_ORF0744
NC_012633.1	Protein Homology	CDS	778883	781378	.	-	0	ID=cds-WP_012719825.1;Parent=gene-RAF_RS04165;Dbxref=GenBank:WP_012719825.1;Name=WP_012719825.1;Ontology_term=GO:0006413,GO:0003743,GO:0003924,GO:0005525,GO:0005737;gbkey=CDS;gene=infB;go_component=cytoplasm|0005737||IEA;go_function=translation initiation factor activity|0003743||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012148585.1;locus_tag=RAF_RS04165;product=translation initiation factor IF-2;protein_id=WP_012719825.1;transl_table=11
NC_012633.1	RefSeq	gene	781618	783129	.	-	.	ID=gene-RAF_RS04170;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=RAF_RS04170;old_locus_tag=RAF_ORF0745
NC_012633.1	Protein Homology	CDS	781618	783129	.	-	0	ID=cds-WP_012719826.1;Parent=gene-RAF_RS04170;Dbxref=GenBank:WP_012719826.1;Name=WP_012719826.1;Ontology_term=GO:0006353,GO:0003723;gbkey=CDS;gene=nusA;go_function=RNA binding|0003723||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442309.1;locus_tag=RAF_RS04170;product=transcription termination factor NusA;protein_id=WP_012719826.1;transl_table=11
NC_012633.1	RefSeq	gene	783140	783625	.	-	.	ID=gene-RAF_RS04175;Name=rimP;gbkey=Gene;gene=rimP;gene_biotype=protein_coding;locus_tag=RAF_RS04175;old_locus_tag=RAF_ORF0746
NC_012633.1	Protein Homology	CDS	783140	783625	.	-	0	ID=cds-WP_004998168.1;Parent=gene-RAF_RS04175;Dbxref=GenBank:WP_004998168.1;Name=WP_004998168.1;gbkey=CDS;gene=rimP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004998168.1;locus_tag=RAF_RS04175;product=ribosome maturation factor RimP;protein_id=WP_004998168.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	783841	784155	.	-	.	ID=gene-RAF_RS10610;Name=RAF_RS10610;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10610;pseudo=true
NC_012633.1	Protein Homology	CDS	783841	784155	.	-	0	ID=cds-RAF_RS10610;Parent=gene-RAF_RS10610;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004998166.1;locus_tag=RAF_RS10610;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	784747	785040	.	-	.	ID=gene-RAF_RS09910;Name=RAF_RS09910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09910;old_locus_tag=RAF_ORF0747
NC_012633.1	Protein Homology	CDS	784747	785040	.	-	0	ID=cds-WP_012719827.1;Parent=gene-RAF_RS09910;Dbxref=GenBank:WP_012719827.1;Name=WP_012719827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719827.1;locus_tag=RAF_RS09910;product=hypothetical protein;protein_id=WP_012719827.1;transl_table=11
NC_012633.1	RefSeq	gene	785162	785590	.	+	.	ID=gene-RAF_RS04190;Name=RAF_RS04190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04190;old_locus_tag=RAF_ORF0748
NC_012633.1	Protein Homology	CDS	785162	785590	.	+	0	ID=cds-WP_012719828.1;Parent=gene-RAF_RS04190;Dbxref=GenBank:WP_012719828.1;Name=WP_012719828.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014408779.1;locus_tag=RAF_RS04190;product=Rrf2 family transcriptional regulator;protein_id=WP_012719828.1;transl_table=11
NC_012633.1	RefSeq	gene	785585	786340	.	-	.	ID=gene-RAF_RS04195;Name=RAF_RS04195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04195;old_locus_tag=RAF_ORF0749
NC_012633.1	Protein Homology	CDS	785585	786340	.	-	0	ID=cds-WP_012719829.1;Parent=gene-RAF_RS04195;Dbxref=GenBank:WP_012719829.1;Name=WP_012719829.1;Ontology_term=GO:0032259,GO:0003723,GO:0008168;gbkey=CDS;go_function=RNA binding|0003723||IEA,methyltransferase activity|0008168||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926371.1;locus_tag=RAF_RS04195;product=TlyA family RNA methyltransferase;protein_id=WP_012719829.1;transl_table=11
NC_012633.1	RefSeq	gene	786499	787734	.	-	.	ID=gene-RAF_RS04200;Name=tyrS;gbkey=Gene;gene=tyrS;gene_biotype=protein_coding;locus_tag=RAF_RS04200;old_locus_tag=RAF_ORF0750
NC_012633.1	Protein Homology	CDS	786499	787734	.	-	0	ID=cds-WP_012719830.1;Parent=gene-RAF_RS04200;Dbxref=GenBank:WP_012719830.1;Name=WP_012719830.1;Ontology_term=GO:0006437,GO:0000166,GO:0004831,GO:0005524;gbkey=CDS;gene=tyrS;go_function=nucleotide binding|0000166||IEA,tyrosine-tRNA ligase activity|0004831||IEA,ATP binding|0005524||IEA;go_process=tyrosyl-tRNA aminoacylation|0006437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190994.1;locus_tag=RAF_RS04200;product=tyrosine--tRNA ligase;protein_id=WP_012719830.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	787738	788018	.	-	.	ID=gene-RAF_RS04205;Name=RAF_RS04205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04205;old_locus_tag=RAF_ORF0751;pseudo=true
NC_012633.1	Protein Homology	CDS	787738	788018	.	-	0	ID=cds-RAF_RS04205;Parent=gene-RAF_RS04205;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830836.1;locus_tag=RAF_RS04205;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	pseudogene	788024	788242	.	-	.	ID=gene-RAF_RS04210;Name=RAF_RS04210;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04210;old_locus_tag=RAF_ORF0752;pseudo=true
NC_012633.1	Protein Homology	CDS	788024	788242	.	-	0	ID=cds-RAF_RS04210;Parent=gene-RAF_RS04210;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151001.1;locus_tag=RAF_RS04210;product=CopG family antitoxin;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	788343	788636	.	+	.	ID=gene-RAF_RS04215;Name=RAF_RS04215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04215;old_locus_tag=RAF_ORF0753
NC_012633.1	Protein Homology	CDS	788343	788636	.	+	0	ID=cds-WP_012719833.1;Parent=gene-RAF_RS04215;Dbxref=GenBank:WP_012719833.1;Name=WP_012719833.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410836.1;locus_tag=RAF_RS04215;product=hypothetical protein;protein_id=WP_012719833.1;transl_table=11
NC_012633.1	RefSeq	gene	789917	789993	.	+	.	ID=gene-RAF_RS04220;Name=RAF_RS04220;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS04220;old_locus_tag=RAF_RNA22
NC_012633.1	tRNAscan-SE	tRNA	789917	789993	.	+	.	ID=rna-RAF_RS04220;Parent=gene-RAF_RS04220;anticodon=(pos:789951..789953);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS04220;product=tRNA-Arg
NC_012633.1	tRNAscan-SE	exon	789917	789993	.	+	.	ID=exon-RAF_RS04220-1;Parent=rna-RAF_RS04220;anticodon=(pos:789951..789953);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS04220;product=tRNA-Arg
NC_012633.1	RefSeq	gene	790437	790916	.	-	.	ID=gene-RAF_RS04230;Name=RAF_RS04230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04230;old_locus_tag=RAF_ORF0754
NC_012633.1	Protein Homology	CDS	790437	790916	.	-	0	ID=cds-WP_012719834.1;Parent=gene-RAF_RS04230;Dbxref=GenBank:WP_012719834.1;Name=WP_012719834.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945793.1;locus_tag=RAF_RS04230;product=hypothetical protein;protein_id=WP_012719834.1;transl_table=11
NC_012633.1	RefSeq	gene	791376	791723	.	-	.	ID=gene-RAF_RS04235;Name=RAF_RS04235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04235;old_locus_tag=RAF_ORF0755
NC_012633.1	Protein Homology	CDS	791376	791723	.	-	0	ID=cds-WP_041471890.1;Parent=gene-RAF_RS04235;Dbxref=GenBank:WP_041471890.1;Name=WP_041471890.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977437.1;locus_tag=RAF_RS04235;product=hypothetical protein;protein_id=WP_041471890.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	792311	793076	.	-	.	ID=gene-RAF_RS09400;Name=RAF_RS09400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS09400;old_locus_tag=RAF_ORF0756;pseudo=true
NC_012633.1	Protein Homology	CDS	792311	793076	.	-	0	ID=cds-RAF_RS09400;Parent=gene-RAF_RS09400;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728240.1;locus_tag=RAF_RS09400;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	793169	793396	.	-	.	ID=gene-RAF_RS04250;Name=RAF_RS04250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04250;old_locus_tag=RAF_ORF0757
NC_012633.1	Protein Homology	CDS	793169	793396	.	-	0	ID=cds-WP_012719837.1;Parent=gene-RAF_RS04250;Dbxref=GenBank:WP_012719837.1;Name=WP_012719837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273602.1;locus_tag=RAF_RS04250;product=hypothetical protein;protein_id=WP_012719837.1;transl_table=11
NC_012633.1	RefSeq	gene	793518	793919	.	-	.	ID=gene-RAF_RS09920;Name=RAF_RS09920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09920;old_locus_tag=RAF_ORF0758
NC_012633.1	Protein Homology	CDS	793518	793919	.	-	0	ID=cds-WP_012719838.1;Parent=gene-RAF_RS09920;Dbxref=GenBank:WP_012719838.1;Name=WP_012719838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719838.1;locus_tag=RAF_RS09920;product=hypothetical protein;protein_id=WP_012719838.1;transl_table=11
NC_012633.1	RefSeq	gene	793931	794155	.	-	.	ID=gene-RAF_RS09925;Name=RAF_RS09925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09925
NC_012633.1	GeneMarkS-2+	CDS	793931	794155	.	-	0	ID=cds-WP_010977441.1;Parent=gene-RAF_RS09925;Dbxref=GenBank:WP_010977441.1;Name=WP_010977441.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09925;product=hypothetical protein;protein_id=WP_010977441.1;transl_table=11
NC_012633.1	RefSeq	gene	794375	800053	.	+	.	ID=gene-RAF_RS04265;Name=RAF_RS04265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04265;old_locus_tag=RAF_ORF0759
NC_012633.1	Protein Homology	CDS	794375	800053	.	+	0	ID=cds-WP_012719839.1;Parent=gene-RAF_RS04265;Dbxref=GenBank:WP_012719839.1;Name=WP_012719839.1;Ontology_term=GO:0010951,GO:0004866;gbkey=CDS;go_function=endopeptidase inhibitor activity|0004866||IEA;go_process=negative regulation of endopeptidase activity|0010951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392383.1;locus_tag=RAF_RS04265;product=alpha-2-macroglobulin family protein;protein_id=WP_012719839.1;transl_table=11
NC_012633.1	RefSeq	gene	800247	800387	.	-	.	ID=gene-RAF_RS09930;Name=RAF_RS09930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09930
NC_012633.1	GeneMarkS-2+	CDS	800247	800387	.	-	0	ID=cds-WP_231282932.1;Parent=gene-RAF_RS09930;Dbxref=GenBank:WP_231282932.1;Name=WP_231282932.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09930;product=hypothetical protein;protein_id=WP_231282932.1;transl_table=11
NC_012633.1	RefSeq	gene	800652	800789	.	-	.	ID=gene-RAF_RS08760;Name=RAF_RS08760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08760
NC_012633.1	Protein Homology	CDS	800652	800789	.	-	0	ID=cds-WP_234943868.1;Parent=gene-RAF_RS08760;Dbxref=GenBank:WP_234943868.1;Name=WP_234943868.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977444.1;locus_tag=RAF_RS08760;product=enoyl-CoA hydratase/isomerase family protein;protein_id=WP_234943868.1;transl_table=11
NC_012633.1	RefSeq	gene	800767	801039	.	-	.	ID=gene-RAF_RS08765;Name=RAF_RS08765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08765
NC_012633.1	GeneMarkS-2+	CDS	800767	801039	.	-	0	ID=cds-WP_148206970.1;Parent=gene-RAF_RS08765;Dbxref=GenBank:WP_148206970.1;Name=WP_148206970.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS08765;product=enoyl-CoA hydratase/isomerase family protein;protein_id=WP_148206970.1;transl_table=11
NC_012633.1	RefSeq	gene	801095	801307	.	-	.	ID=gene-RAF_RS04275;Name=RAF_RS04275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04275
NC_012633.1	GeneMarkS-2+	CDS	801095	801307	.	-	0	ID=cds-WP_041471892.1;Parent=gene-RAF_RS04275;Dbxref=GenBank:WP_041471892.1;Name=WP_041471892.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS04275;product=hypothetical protein;protein_id=WP_041471892.1;transl_table=11
NC_012633.1	RefSeq	gene	801418	801576	.	-	.	ID=gene-RAF_RS09405;Name=RAF_RS09405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09405
NC_012633.1	Protein Homology	CDS	801418	801576	.	-	0	ID=cds-WP_200858167.1;Parent=gene-RAF_RS09405;Dbxref=GenBank:WP_200858167.1;Name=WP_200858167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410843.1;locus_tag=RAF_RS09405;product=hypothetical protein;protein_id=WP_200858167.1;transl_table=11
NC_012633.1	RefSeq	gene	801581	801949	.	-	.	ID=gene-RAF_RS04280;Name=RAF_RS04280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04280
NC_012633.1	Protein Homology	CDS	801581	801949	.	-	0	ID=cds-WP_041471893.1;Parent=gene-RAF_RS04280;Dbxref=GenBank:WP_041471893.1;Name=WP_041471893.1;Ontology_term=GO:0006631,GO:0016491,GO:0016616;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410844.1;locus_tag=RAF_RS04280;product=3-hydroxyacyl-CoA dehydrogenase family protein;protein_id=WP_041471893.1;transl_table=11
NC_012633.1	RefSeq	gene	801951	802418	.	-	.	ID=gene-RAF_RS04285;Name=RAF_RS04285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04285
NC_012633.1	Protein Homology	CDS	801951	802418	.	-	0	ID=cds-WP_041471894.1;Parent=gene-RAF_RS04285;Dbxref=GenBank:WP_041471894.1;Name=WP_041471894.1;Ontology_term=GO:0006635,GO:0003857,GO:0070403;gbkey=CDS;go_function=3-hydroxyacyl-CoA dehydrogenase activity|0003857||IEA,NAD+ binding|0070403||IEA;go_process=fatty acid beta-oxidation|0006635||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364834.1;locus_tag=RAF_RS04285;product=3-hydroxyacyl-CoA dehydrogenase family protein;protein_id=WP_041471894.1;transl_table=11
NC_012633.1	RefSeq	gene	802506	802871	.	-	.	ID=gene-RAF_RS04290;Name=RAF_RS04290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04290;old_locus_tag=RAF_ORF0765
NC_012633.1	Protein Homology	CDS	802506	802871	.	-	0	ID=cds-WP_012719840.1;Parent=gene-RAF_RS04290;Dbxref=GenBank:WP_012719840.1;Name=WP_012719840.1;Ontology_term=GO:0030420;gbkey=CDS;go_process=establishment of competence for transformation|0030420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770271.1;locus_tag=RAF_RS04290;product=ComF family protein;protein_id=WP_012719840.1;transl_table=11
NC_012633.1	RefSeq	gene	802864	803139	.	-	.	ID=gene-RAF_RS09935;Name=RAF_RS09935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09935;old_locus_tag=RAF_ORF0766
NC_012633.1	Protein Homology	CDS	802864	803139	.	-	0	ID=cds-WP_231287785.1;Parent=gene-RAF_RS09935;Dbxref=GenBank:WP_231287785.1;Name=WP_231287785.1;Ontology_term=GO:0030420;gbkey=CDS;go_process=establishment of competence for transformation|0030420||IEA;inference=COORDINATES: protein motif:HMM:NF039185.4;locus_tag=RAF_RS09935;product=ComF family protein;protein_id=WP_231287785.1;transl_table=11
NC_012633.1	RefSeq	gene	803255	803722	.	-	.	ID=gene-RAF_RS04300;Name=RAF_RS04300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04300
NC_012633.1	Protein Homology	CDS	803255	803722	.	-	0	ID=cds-WP_041471895.1;Parent=gene-RAF_RS04300;Dbxref=GenBank:WP_041471895.1;Name=WP_041471895.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012262472.1;locus_tag=RAF_RS04300;product=hypothetical protein;protein_id=WP_041471895.1;transl_table=11
NC_012633.1	RefSeq	gene	803834	804097	.	-	.	ID=gene-RAF_RS07975;Name=RAF_RS07975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07975
NC_012633.1	Protein Homology	CDS	803834	804097	.	-	0	ID=cds-WP_148206971.1;Parent=gene-RAF_RS07975;Dbxref=GenBank:WP_148206971.1;Name=WP_148206971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151010.1;locus_tag=RAF_RS07975;product=hypothetical protein;protein_id=WP_148206971.1;transl_table=11
NC_012633.1	RefSeq	gene	804118	804360	.	-	.	ID=gene-RAF_RS04305;Name=RAF_RS04305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04305
NC_012633.1	Protein Homology	CDS	804118	804360	.	-	0	ID=cds-WP_041471896.1;Parent=gene-RAF_RS04305;Dbxref=GenBank:WP_041471896.1;Name=WP_041471896.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830841.1;locus_tag=RAF_RS04305;product=hypothetical protein;protein_id=WP_041471896.1;transl_table=11
NC_012633.1	RefSeq	gene	804550	804816	.	-	.	ID=gene-RAF_RS04310;Name=RAF_RS04310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04310;old_locus_tag=RAF_ORF0770
NC_012633.1	Protein Homology	CDS	804550	804816	.	-	0	ID=cds-WP_012719842.1;Parent=gene-RAF_RS04310;Dbxref=GenBank:WP_012719842.1;Name=WP_012719842.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945802.1;locus_tag=RAF_RS04310;product=hypothetical protein;protein_id=WP_012719842.1;transl_table=11
NC_012633.1	RefSeq	gene	804994	806280	.	-	.	ID=gene-RAF_RS04315;Name=ubiH;gbkey=Gene;gene=ubiH;gene_biotype=protein_coding;locus_tag=RAF_RS04315;old_locus_tag=RAF_ORF0771
NC_012633.1	Protein Homology	CDS	804994	806280	.	-	0	ID=cds-WP_041471897.1;Parent=gene-RAF_RS04315;Dbxref=GenBank:WP_041471897.1;Name=WP_041471897.1;Ontology_term=GO:0006744,GO:0008681;gbkey=CDS;gene=ubiH;go_function=2-octaprenyl-6-methoxyphenol hydroxylase activity|0008681||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151014.1;locus_tag=RAF_RS04315;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=WP_041471897.1;transl_table=11
NC_012633.1	RefSeq	gene	806261	806527	.	-	.	ID=gene-RAF_RS04320;Name=RAF_RS04320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04320;old_locus_tag=RAF_ORF0772
NC_012633.1	Protein Homology	CDS	806261	806527	.	-	0	ID=cds-WP_012719844.1;Parent=gene-RAF_RS04320;Dbxref=GenBank:WP_012719844.1;Name=WP_012719844.1;Ontology_term=GO:0034220,GO:0015075,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=monoatomic ion transmembrane transporter activity|0015075||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409358.1;locus_tag=RAF_RS04320;product=monovalent cation/H+ antiporter complex subunit F;protein_id=WP_012719844.1;transl_table=11
NC_012633.1	RefSeq	gene	807044	808468	.	+	.	ID=gene-RAF_RS04325;Name=RAF_RS04325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04325;old_locus_tag=RAF_ORF0773
NC_012633.1	Protein Homology	CDS	807044	808468	.	+	0	ID=cds-WP_012719845.1;Parent=gene-RAF_RS04325;Dbxref=GenBank:WP_012719845.1;Name=WP_012719845.1;Ontology_term=GO:0000160,GO:0006355,GO:0000156,GO:0003677,GO:0005524;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA,DNA binding|0003677||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011190999.1;locus_tag=RAF_RS04325;product=sigma-54-dependent transcriptional regulator;protein_id=WP_012719845.1;transl_table=11
NC_012633.1	RefSeq	gene	808461	810206	.	+	.	ID=gene-RAF_RS04330;Name=RAF_RS04330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04330;old_locus_tag=RAF_ORF0774
NC_012633.1	Protein Homology	CDS	808461	810206	.	+	0	ID=cds-WP_041471898.1;Parent=gene-RAF_RS04330;Dbxref=GenBank:WP_041471898.1;Name=WP_041471898.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830844.1;locus_tag=RAF_RS04330;product=pentapeptide repeat-containing protein;protein_id=WP_041471898.1;transl_table=11
NC_012633.1	RefSeq	gene	810428	811387	.	-	.	ID=gene-RAF_RS04335;Name=RAF_RS04335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04335;old_locus_tag=RAF_ORF0775
NC_012633.1	Protein Homology	CDS	810428	811387	.	-	0	ID=cds-WP_012719847.1;Parent=gene-RAF_RS04335;Dbxref=GenBank:WP_012719847.1;Name=WP_012719847.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151018.1;locus_tag=RAF_RS04335;product=hypothetical protein;protein_id=WP_012719847.1;transl_table=11
NC_012633.1	RefSeq	gene	812063	813844	.	-	.	ID=gene-RAF_RS04340;Name=mrdA;gbkey=Gene;gene=mrdA;gene_biotype=protein_coding;locus_tag=RAF_RS04340;old_locus_tag=RAF_ORF0776
NC_012633.1	Protein Homology	CDS	812063	813844	.	-	0	ID=cds-WP_012719848.1;Parent=gene-RAF_RS04340;Dbxref=GenBank:WP_012719848.1;Name=WP_012719848.1;Ontology_term=GO:0009252,GO:0003824,GO:0008658,GO:0016020;gbkey=CDS;gene=mrdA;go_component=membrane|0016020||IEA;go_function=catalytic activity|0003824||IEA,penicillin binding|0008658||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442341.1;locus_tag=RAF_RS04340;product=penicillin-binding protein 2;protein_id=WP_012719848.1;transl_table=11
NC_012633.1	RefSeq	gene	813834	814355	.	-	.	ID=gene-RAF_RS04345;Name=RAF_RS04345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04345;old_locus_tag=RAF_ORF0777
NC_012633.1	Protein Homology	CDS	813834	814355	.	-	0	ID=cds-WP_012719849.1;Parent=gene-RAF_RS04345;Dbxref=GenBank:WP_012719849.1;Name=WP_012719849.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442342.1;locus_tag=RAF_RS04345;product=hypothetical protein;protein_id=WP_012719849.1;transl_table=11
NC_012633.1	RefSeq	gene	814605	814799	.	-	.	ID=gene-RAF_RS04350;Name=RAF_RS04350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04350
NC_012633.1	Protein Homology	CDS	814605	814799	.	-	0	ID=cds-WP_041471899.1;Parent=gene-RAF_RS04350;Dbxref=GenBank:WP_041471899.1;Name=WP_041471899.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364845.1;locus_tag=RAF_RS04350;product=hypothetical protein;protein_id=WP_041471899.1;transl_table=11
NC_012633.1	RefSeq	gene	814974	816656	.	-	.	ID=gene-RAF_RS04355;Name=RAF_RS04355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04355;old_locus_tag=RAF_ORF0778
NC_012633.1	Protein Homology	CDS	814974	816656	.	-	0	ID=cds-WP_012719850.1;Parent=gene-RAF_RS04355;Dbxref=GenBank:WP_012719850.1;Name=WP_012719850.1;Ontology_term=GO:0009252,GO:0051301,GO:0071555,GO:0008658,GO:0008955,GO:0009002,GO:0016787,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA,serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA,hydrolase activity|0016787||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012149781.1;locus_tag=RAF_RS04355;product=peptidoglycan D%2CD-transpeptidase FtsI family protein;protein_id=WP_012719850.1;transl_table=11
NC_012633.1	RefSeq	gene	817000	817398	.	-	.	ID=gene-RAF_RS04360;Name=RAF_RS04360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04360;old_locus_tag=RAF_ORF0779
NC_012633.1	Protein Homology	CDS	817000	817398	.	-	0	ID=cds-WP_004998104.1;Parent=gene-RAF_RS04360;Dbxref=GenBank:WP_004998104.1;Name=WP_004998104.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977462.1;locus_tag=RAF_RS04360;product=hypothetical protein;protein_id=WP_004998104.1;transl_table=11
NC_012633.1	RefSeq	gene	817405	818328	.	-	.	ID=gene-RAF_RS04365;Name=rsmH;gbkey=Gene;gene=rsmH;gene_biotype=protein_coding;locus_tag=RAF_RS04365;old_locus_tag=RAF_ORF0780
NC_012633.1	Protein Homology	CDS	817405	818328	.	-	0	ID=cds-WP_012719851.1;Parent=gene-RAF_RS04365;Dbxref=GenBank:WP_012719851.1;Name=WP_012719851.1;Ontology_term=GO:0016434;gbkey=CDS;gene=rsmH;go_function=rRNA (cytosine) methyltransferase activity|0016434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442346.1;locus_tag=RAF_RS04365;product=16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH;protein_id=WP_012719851.1;transl_table=11
NC_012633.1	RefSeq	gene	818328	818777	.	-	.	ID=gene-RAF_RS04370;Name=mraZ;gbkey=Gene;gene=mraZ;gene_biotype=protein_coding;locus_tag=RAF_RS04370;old_locus_tag=RAF_ORF0781
NC_012633.1	Protein Homology	CDS	818328	818777	.	-	0	ID=cds-WP_010977464.1;Parent=gene-RAF_RS04370;Dbxref=GenBank:WP_010977464.1;Name=WP_010977464.1;gbkey=CDS;gene=mraZ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191007.1;locus_tag=RAF_RS04370;product=division/cell wall cluster transcriptional repressor MraZ;protein_id=WP_010977464.1;transl_table=11
NC_012633.1	RefSeq	gene	819191	819709	.	+	.	ID=gene-RAF_RS04375;Name=RAF_RS04375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04375;old_locus_tag=RAF_ORF0782
NC_012633.1	Protein Homology	CDS	819191	819709	.	+	0	ID=cds-WP_012719852.1;Parent=gene-RAF_RS04375;Dbxref=GenBank:WP_012719852.1;Name=WP_012719852.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736705.1;locus_tag=RAF_RS04375;product=ankyrin repeat domain-containing protein;protein_id=WP_012719852.1;transl_table=11
NC_012633.1	RefSeq	gene	819747	819926	.	+	.	ID=gene-RAF_RS04380;Name=RAF_RS04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04380
NC_012633.1	GeneMarkS-2+	CDS	819747	819926	.	+	0	ID=cds-WP_041471900.1;Parent=gene-RAF_RS04380;Dbxref=GenBank:WP_041471900.1;Name=WP_041471900.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS04380;product=hypothetical protein;protein_id=WP_041471900.1;transl_table=11
NC_012633.1	RefSeq	gene	820358	821755	.	+	.	ID=gene-RAF_RS04385;Name=RAF_RS04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04385;old_locus_tag=RAF_ORF0783
NC_012633.1	Protein Homology	CDS	820358	821755	.	+	0	ID=cds-WP_012719853.1;Parent=gene-RAF_RS04385;Dbxref=GenBank:WP_012719853.1;Name=WP_012719853.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151026.1;locus_tag=RAF_RS04385;product=sodium:solute symporter;protein_id=WP_012719853.1;transl_table=11
NC_012633.1	RefSeq	gene	822033	822194	.	+	.	ID=gene-RAF_RS09410;Name=RAF_RS09410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09410
NC_012633.1	Protein Homology	CDS	822033	822194	.	+	0	ID=cds-WP_004998095.1;Parent=gene-RAF_RS09410;Dbxref=GenBank:WP_004998095.1;Name=WP_004998095.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004998095.1;locus_tag=RAF_RS09410;product=hypothetical protein;protein_id=WP_004998095.1;transl_table=11
NC_012633.1	RefSeq	gene	822382	824301	.	-	.	ID=gene-RAF_RS04390;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=RAF_RS04390;old_locus_tag=RAF_ORF0784
NC_012633.1	Protein Homology	CDS	822382	824301	.	-	0	ID=cds-WP_012719854.1;Parent=gene-RAF_RS04390;Dbxref=GenBank:WP_012719854.1;Name=WP_012719854.1;Ontology_term=GO:0006289,GO:0009381,GO:0009380;gbkey=CDS;gene=uvrC;go_component=excinuclease repair complex|0009380||IEA;go_function=excinuclease ABC activity|0009381||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442351.1;locus_tag=RAF_RS04390;product=excinuclease ABC subunit UvrC;protein_id=WP_012719854.1;transl_table=11
NC_012633.1	RefSeq	gene	824476	825009	.	-	.	ID=gene-RAF_RS04395;Name=RAF_RS04395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04395;old_locus_tag=RAF_ORF0785
NC_012633.1	Protein Homology	CDS	824476	825009	.	-	0	ID=cds-WP_012719855.1;Parent=gene-RAF_RS04395;Dbxref=GenBank:WP_012719855.1;Name=WP_012719855.1;Ontology_term=GO:0016531;gbkey=CDS;go_function=copper chaperone activity|0016531||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597884.1;locus_tag=RAF_RS04395;product=copper chaperone PCu(A)C;protein_id=WP_012719855.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	825063	825585	.	-	.	ID=gene-RAF_RS04400;Name=RAF_RS04400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04400;old_locus_tag=RAF_ORF0786;pseudo=true
NC_012633.1	Protein Homology	CDS	825063	825585	.	-	0	ID=cds-RAF_RS04400;Parent=gene-RAF_RS04400;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419869.1;locus_tag=RAF_RS04400;product=DNA alkylation repair protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	825593	825763	.	-	.	ID=gene-RAF_RS07995;Name=RAF_RS07995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07995
NC_012633.1	Protein Homology	CDS	825593	825763	.	-	0	ID=cds-WP_083762111.1;Parent=gene-RAF_RS07995;Dbxref=GenBank:WP_083762111.1;Name=WP_083762111.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917513.1;locus_tag=RAF_RS07995;product=DNA alkylation repair protein;protein_id=WP_083762111.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	825723	826286	.	-	.	ID=gene-RAF_RS10615;Name=RAF_RS10615;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10615;pseudo=true
NC_012633.1	Protein Homology	CDS	825723	826286	.	-	0	ID=cds-RAF_RS10615;Parent=gene-RAF_RS10615;Note=frameshifted%3B internal stop;Ontology_term=GO:0006281,GO:0032259,GO:0003677,GO:0003908,GO:0046872;gbkey=CDS;go_function=DNA binding|0003677||IEA,methylated-DNA-[protein]-cysteine S-methyltransferase activity|0003908||IEA,metal ion binding|0046872||IEA;go_process=DNA repair|0006281||IEA,methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014363795.1;locus_tag=RAF_RS10615;product=methylated-DNA--[protein]-cysteine S-methyltransferase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	pseudogene	826317	826613	.	-	.	ID=gene-RAF_RS10620;Name=RAF_RS10620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10620;partial=true;pseudo=true;start_range=.,826317
NC_012633.1	Protein Homology	CDS	826317	826613	.	-	0	ID=cds-RAF_RS10620;Parent=gene-RAF_RS10620;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024242.5;locus_tag=RAF_RS10620;partial=true;product=methylated-DNA-protein-cysteine methyltransferase;pseudo=true;start_range=.,826317;transl_table=11
NC_012633.1	RefSeq	gene	826561	826794	.	-	.	ID=gene-RAF_RS08010;Name=RAF_RS08010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08010
NC_012633.1	Protein Homology	CDS	826561	826794	.	-	0	ID=cds-WP_083762113.1;Parent=gene-RAF_RS08010;Dbxref=GenBank:WP_083762113.1;Name=WP_083762113.1;Ontology_term=GO:0006281,GO:0006355,GO:0003677,GO:0008168,GO:0008270;gbkey=CDS;go_function=DNA binding|0003677||IEA,methyltransferase activity|0008168||IEA,zinc ion binding|0008270||IEA;go_process=DNA repair|0006281||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410866.1;locus_tag=RAF_RS08010;product=Ada metal-binding domain-containing protein;protein_id=WP_083762113.1;transl_table=11
NC_012633.1	RefSeq	gene	826884	827390	.	-	.	ID=gene-RAF_RS04415;Name=RAF_RS04415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04415;old_locus_tag=RAF_ORF0789
NC_012633.1	Protein Homology	CDS	826884	827390	.	-	0	ID=cds-WP_012719857.1;Parent=gene-RAF_RS04415;Dbxref=GenBank:WP_012719857.1;Name=WP_012719857.1;Ontology_term=GO:0006281,GO:0032259,GO:0003677,GO:0003908,GO:0046872;gbkey=CDS;go_function=DNA binding|0003677||IEA,methylated-DNA-[protein]-cysteine S-methyltransferase activity|0003908||IEA,metal ion binding|0046872||IEA;go_process=DNA repair|0006281||IEA,methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945812.1;locus_tag=RAF_RS04415;product=methylated-DNA--[protein]-cysteine S-methyltransferase;protein_id=WP_012719857.1;transl_table=11
NC_012633.1	RefSeq	gene	827486	827629	.	+	.	ID=gene-RAF_RS09425;Name=RAF_RS09425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09425
NC_012633.1	Protein Homology	CDS	827486	827629	.	+	0	ID=cds-WP_200858168.1;Parent=gene-RAF_RS09425;Dbxref=GenBank:WP_200858168.1;Name=WP_200858168.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014014506.1;locus_tag=RAF_RS09425;product=hypothetical protein;protein_id=WP_200858168.1;transl_table=11
NC_012633.1	RefSeq	gene	827680	827871	.	+	.	ID=gene-RAF_RS04420;Name=RAF_RS04420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04420
NC_012633.1	Protein Homology	CDS	827680	827871	.	+	0	ID=cds-WP_014410869.1;Parent=gene-RAF_RS04420;Dbxref=GenBank:WP_014410869.1;Name=WP_014410869.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917510.1;locus_tag=RAF_RS04420;product=hypothetical protein;protein_id=WP_014410869.1;transl_table=11
NC_012633.1	RefSeq	gene	828162	828293	.	-	.	ID=gene-RAF_RS10410;Name=RAF_RS10410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10410
NC_012633.1	Protein Homology	CDS	828162	828293	.	-	0	ID=cds-WP_014410871.1;Parent=gene-RAF_RS10410;Dbxref=GenBank:WP_014410871.1;Name=WP_014410871.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728227.1;locus_tag=RAF_RS10410;product=hypothetical protein;protein_id=WP_014410871.1;transl_table=11
NC_012633.1	RefSeq	gene	828339	828755	.	-	.	ID=gene-RAF_RS04430;Name=RAF_RS04430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04430
NC_012633.1	Protein Homology	CDS	828339	828755	.	-	0	ID=cds-WP_041471901.1;Parent=gene-RAF_RS04430;Dbxref=GenBank:WP_041471901.1;Name=WP_041471901.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770291.1;locus_tag=RAF_RS04430;product=hypothetical protein;protein_id=WP_041471901.1;transl_table=11
NC_012633.1	RefSeq	gene	828779	828997	.	-	.	ID=gene-RAF_RS04435;Name=RAF_RS04435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04435
NC_012633.1	Protein Homology	CDS	828779	828997	.	-	0	ID=cds-WP_004998084.1;Parent=gene-RAF_RS04435;Dbxref=GenBank:WP_004998084.1;Name=WP_004998084.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977478.1;locus_tag=RAF_RS04435;product=hypothetical protein;protein_id=WP_004998084.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	829202	829671	.	-	.	ID=gene-RAF_RS04440;Name=RAF_RS04440;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04440;pseudo=true
NC_012633.1	Protein Homology	CDS	829202	829671	.	-	0	ID=cds-RAF_RS04440;Parent=gene-RAF_RS04440;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830850.1;locus_tag=RAF_RS04440;product=UvrB domain 3-containing protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	829744	830217	.	-	.	ID=gene-RAF_RS04445;Name=RAF_RS04445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04445;old_locus_tag=RAF_ORF0793
NC_012633.1	Protein Homology	CDS	829744	830217	.	-	0	ID=cds-WP_012719858.1;Parent=gene-RAF_RS04445;Dbxref=GenBank:WP_012719858.1;Name=WP_012719858.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719858.1;locus_tag=RAF_RS04445;product=hypothetical protein;protein_id=WP_012719858.1;transl_table=11
NC_012633.1	RefSeq	gene	830232	830363	.	-	.	ID=gene-RAF_RS10415;Name=RAF_RS10415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10415
NC_012633.1	Protein Homology	CDS	830232	830363	.	-	0	ID=cds-WP_016728225.1;Parent=gene-RAF_RS10415;Dbxref=GenBank:WP_016728225.1;Name=WP_016728225.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728225.1;locus_tag=RAF_RS10415;product=hypothetical protein;protein_id=WP_016728225.1;transl_table=11
NC_012633.1	RefSeq	gene	830677	830751	.	-	.	ID=gene-RAF_RS04450;Name=RAF_RS04450;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS04450;old_locus_tag=RAF_RNA23
NC_012633.1	tRNAscan-SE	tRNA	830677	830751	.	-	.	ID=rna-RAF_RS04450;Parent=gene-RAF_RS04450;anticodon=(pos:complement(830717..830719));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS04450;product=tRNA-Ala
NC_012633.1	tRNAscan-SE	exon	830677	830751	.	-	.	ID=exon-RAF_RS04450-1;Parent=rna-RAF_RS04450;anticodon=(pos:complement(830717..830719));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS04450;product=tRNA-Ala
NC_012633.1	RefSeq	gene	830788	830997	.	-	.	ID=gene-RAF_RS04455;Name=RAF_RS04455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04455;old_locus_tag=RAF_ORF0794
NC_012633.1	Protein Homology	CDS	830788	830997	.	-	0	ID=cds-WP_004998070.1;Parent=gene-RAF_RS04455;Dbxref=GenBank:WP_004998070.1;Name=WP_004998070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004998070.1;locus_tag=RAF_RS04455;product=hypothetical protein;protein_id=WP_004998070.1;transl_table=11
NC_012633.1	RefSeq	gene	831323	831565	.	-	.	ID=gene-RAF_RS04460;Name=RAF_RS04460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04460;old_locus_tag=RAF_ORF0795
NC_012633.1	Protein Homology	CDS	831323	831565	.	-	0	ID=cds-WP_012719859.1;Parent=gene-RAF_RS04460;Dbxref=GenBank:WP_012719859.1;Name=WP_012719859.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014408812.1;locus_tag=RAF_RS04460;product=ankyrin repeat domain-containing protein;protein_id=WP_012719859.1;transl_table=11
NC_012633.1	RefSeq	gene	831785	832015	.	-	.	ID=gene-RAF_RS04465;Name=RAF_RS04465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04465
NC_012633.1	Protein Homology	CDS	831785	832015	.	-	0	ID=cds-WP_032850888.1;Parent=gene-RAF_RS04465;Dbxref=GenBank:WP_032850888.1;Name=WP_032850888.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410873.1;locus_tag=RAF_RS04465;product=hypothetical protein;protein_id=WP_032850888.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	832254	832415	.	-	.	ID=gene-RAF_RS09955;Name=RAF_RS09955;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS09955;partial=true;pseudo=true;start_range=.,832254
NC_012633.1	Protein Homology	CDS	832254	832415	.	-	0	ID=cds-RAF_RS09955;Parent=gene-RAF_RS09955;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012152151.1;locus_tag=RAF_RS09955;partial=true;product=nucleotidyltransferase;pseudo=true;start_range=.,832254;transl_table=11
NC_012633.1	RefSeq	gene	832626	835346	.	-	.	ID=gene-RAF_RS04470;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;locus_tag=RAF_RS04470;old_locus_tag=RAF_ORF0796
NC_012633.1	Protein Homology	CDS	832626	835346	.	-	0	ID=cds-WP_012719860.1;Parent=gene-RAF_RS04470;Dbxref=GenBank:WP_012719860.1;Name=WP_012719860.1;Ontology_term=GO:0006605,GO:0006886,GO:0017038,GO:0005524;gbkey=CDS;gene=secA;go_function=ATP binding|0005524||IEA;go_process=protein targeting|0006605||IEA,intracellular protein transport|0006886||IEA,protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409374.1;locus_tag=RAF_RS04470;product=preprotein translocase subunit SecA;protein_id=WP_012719860.1;transl_table=11
NC_012633.1	RefSeq	gene	835562	836410	.	+	.	ID=gene-RAF_RS04475;Name=RAF_RS04475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04475;old_locus_tag=RAF_ORF0797
NC_012633.1	Protein Homology	CDS	835562	836410	.	+	0	ID=cds-WP_012719861.1;Parent=gene-RAF_RS04475;Dbxref=GenBank:WP_012719861.1;Name=WP_012719861.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597887.1;locus_tag=RAF_RS04475;product=peptidylprolyl isomerase;protein_id=WP_012719861.1;transl_table=11
NC_012633.1	RefSeq	gene	836620	837015	.	-	.	ID=gene-RAF_RS04480;Name=acpS;gbkey=Gene;gene=acpS;gene_biotype=protein_coding;locus_tag=RAF_RS04480;old_locus_tag=RAF_ORF0798
NC_012633.1	Protein Homology	CDS	836620	837015	.	-	0	ID=cds-WP_012719862.1;Parent=gene-RAF_RS04480;Dbxref=GenBank:WP_012719862.1;Name=WP_012719862.1;Ontology_term=GO:0008610,GO:0008897;gbkey=CDS;gene=acpS;go_function=holo-[acyl-carrier-protein] synthase activity|0008897||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151044.1;locus_tag=RAF_RS04480;product=holo-ACP synthase;protein_id=WP_012719862.1;transl_table=11
NC_012633.1	RefSeq	gene	837016	837399	.	-	.	ID=gene-RAF_RS04485;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=RAF_RS04485;old_locus_tag=RAF_ORF0799
NC_012633.1	Protein Homology	CDS	837016	837399	.	-	0	ID=cds-WP_010977486.1;Parent=gene-RAF_RS04485;Dbxref=GenBank:WP_010977486.1;Name=WP_010977486.1;Ontology_term=GO:0006351,GO:0003899;gbkey=CDS;gene=rpoZ;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014014529.1;locus_tag=RAF_RS04485;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_010977486.1;transl_table=11
NC_012633.1	RefSeq	gene	837588	838847	.	-	.	ID=gene-RAF_RS04490;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;locus_tag=RAF_RS04490;old_locus_tag=RAF_ORF0800
NC_012633.1	Protein Homology	CDS	837588	838847	.	-	0	ID=cds-WP_012719863.1;Parent=gene-RAF_RS04490;Dbxref=GenBank:WP_012719863.1;Name=WP_012719863.1;Ontology_term=GO:0019277,GO:0008760;gbkey=CDS;gene=murA;go_function=UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity|0008760||IEA;go_process=UDP-N-acetylgalactosamine biosynthetic process|0019277||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191016.1;locus_tag=RAF_RS04490;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_012719863.1;transl_table=11
NC_012633.1	RefSeq	gene	838939	841362	.	-	.	ID=gene-RAF_RS04495;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=RAF_RS04495;old_locus_tag=RAF_ORF0801
NC_012633.1	Protein Homology	CDS	838939	841362	.	-	0	ID=cds-WP_012719864.1;Parent=gene-RAF_RS04495;Dbxref=GenBank:WP_012719864.1;Name=WP_012719864.1;Ontology_term=GO:0006265,GO:0003677,GO:0003918,GO:0005524,GO:0005694;gbkey=CDS;gene=gyrB;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271270.1;locus_tag=RAF_RS04495;product=DNA topoisomerase (ATP-hydrolyzing) subunit B;protein_id=WP_012719864.1;transl_table=11
NC_012633.1	RefSeq	gene	841642	842502	.	+	.	ID=gene-RAF_RS04500;Name=RAF_RS04500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04500;old_locus_tag=RAF_ORF0802
NC_012633.1	Protein Homology	CDS	841642	842502	.	+	0	ID=cds-WP_012719865.1;Parent=gene-RAF_RS04500;Dbxref=GenBank:WP_012719865.1;Name=WP_012719865.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151048.1;locus_tag=RAF_RS04500;product=TIGR01459 family HAD-type hydrolase;protein_id=WP_012719865.1;transl_table=11
NC_012633.1	RefSeq	gene	842657	842743	.	+	.	ID=gene-RAF_RS04505;Name=RAF_RS04505;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS04505;old_locus_tag=RAF_RNA24
NC_012633.1	tRNAscan-SE	tRNA	842657	842743	.	+	.	ID=rna-RAF_RS04505;Parent=gene-RAF_RS04505;anticodon=(pos:842691..842693);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS04505;product=tRNA-Leu
NC_012633.1	tRNAscan-SE	exon	842657	842743	.	+	.	ID=exon-RAF_RS04505-1;Parent=rna-RAF_RS04505;anticodon=(pos:842691..842693);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS04505;product=tRNA-Leu
NC_012633.1	RefSeq	gene	843008	844378	.	+	.	ID=gene-RAF_RS04510;Name=mgtE;gbkey=Gene;gene=mgtE;gene_biotype=protein_coding;locus_tag=RAF_RS04510;old_locus_tag=RAF_ORF0803
NC_012633.1	Protein Homology	CDS	843008	844378	.	+	0	ID=cds-WP_010977490.1;Parent=gene-RAF_RS04510;Dbxref=GenBank:WP_010977490.1;Name=WP_010977490.1;Ontology_term=GO:0015693,GO:0015095,GO:0016020;gbkey=CDS;gene=mgtE;go_component=membrane|0016020||IEA;go_function=magnesium ion transmembrane transporter activity|0015095||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014412558.1;locus_tag=RAF_RS04510;product=magnesium transporter;protein_id=WP_010977490.1;transl_table=11
NC_012633.1	RefSeq	gene	844382	844669	.	-	.	ID=gene-RAF_RS04515;Name=RAF_RS04515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04515;old_locus_tag=RAF_ORF0804
NC_012633.1	Protein Homology	CDS	844382	844669	.	-	0	ID=cds-WP_012719866.1;Parent=gene-RAF_RS04515;Dbxref=GenBank:WP_012719866.1;Name=WP_012719866.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926412.1;locus_tag=RAF_RS04515;product=hypothetical protein;protein_id=WP_012719866.1;transl_table=11
NC_012633.1	RefSeq	gene	845228	845497	.	+	.	ID=gene-RAF_RS09960;Name=RAF_RS09960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09960;old_locus_tag=RAF_ORF0805
NC_012633.1	Protein Homology	CDS	845228	845497	.	+	0	ID=cds-WP_012719867.1;Parent=gene-RAF_RS09960;Dbxref=GenBank:WP_012719867.1;Name=WP_012719867.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024724.5;locus_tag=RAF_RS09960;product=HD domain-containing protein;protein_id=WP_012719867.1;transl_table=11
NC_012633.1	RefSeq	gene	845714	846055	.	-	.	ID=gene-RAF_RS09965;Name=RAF_RS09965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09965;old_locus_tag=RAF_ORF0806
NC_012633.1	Protein Homology	CDS	845714	846055	.	-	0	ID=cds-WP_041471902.1;Parent=gene-RAF_RS09965;Dbxref=GenBank:WP_041471902.1;Name=WP_041471902.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410883.1;locus_tag=RAF_RS09965;product=hypothetical protein;protein_id=WP_041471902.1;transl_table=11
NC_012633.1	RefSeq	gene	846514	846636	.	-	.	ID=gene-RAF_RS09970;Name=RAF_RS09970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09970
NC_012633.1	Protein Homology	CDS	846514	846636	.	-	0	ID=cds-WP_041471903.1;Parent=gene-RAF_RS09970;Dbxref=GenBank:WP_041471903.1;Name=WP_041471903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364865.1;locus_tag=RAF_RS09970;product=hypothetical protein;protein_id=WP_041471903.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	846758	846913	.	-	.	ID=gene-RAF_RS09975;Name=RAF_RS09975;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS09975;partial=true;pseudo=true;start_range=.,846758
NC_012633.1	Protein Homology	CDS	846758	846913	.	-	0	ID=cds-RAF_RS09975;Parent=gene-RAF_RS09975;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012312.5;locus_tag=RAF_RS09975;partial=true;product=proline/betaine transporter;pseudo=true;start_range=.,846758;transl_table=11
NC_012633.1	RefSeq	gene	847448	847522	.	+	.	ID=gene-RAF_RS04545;Name=RAF_RS04545;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS04545;old_locus_tag=RAF_RNA25
NC_012633.1	tRNAscan-SE	tRNA	847448	847522	.	+	.	ID=rna-RAF_RS04545;Parent=gene-RAF_RS04545;anticodon=(pos:847480..847482);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS04545;product=tRNA-Gly
NC_012633.1	tRNAscan-SE	exon	847448	847522	.	+	.	ID=exon-RAF_RS04545-1;Parent=rna-RAF_RS04545;anticodon=(pos:847480..847482);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS04545;product=tRNA-Gly
NC_012633.1	RefSeq	gene	847637	847819	.	-	.	ID=gene-RAF_RS04550;Name=RAF_RS04550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04550
NC_012633.1	Protein Homology	CDS	847637	847819	.	-	0	ID=cds-WP_004998028.1;Parent=gene-RAF_RS04550;Dbxref=GenBank:WP_004998028.1;Name=WP_004998028.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442387.1;locus_tag=RAF_RS04550;product=hypothetical protein;protein_id=WP_004998028.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	848006	848246	.	+	.	ID=gene-RAF_RS10625;Name=RAF_RS10625;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10625;pseudo=true
NC_012633.1	Protein Homology	CDS	848006	848246	.	+	0	ID=cds-RAF_RS10625;Parent=gene-RAF_RS10625;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977496.1;locus_tag=RAF_RS10625;product=palindromic element RPE5 domain-containing protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	848198	848623	.	+	.	ID=gene-RAF_RS04555;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=RAF_RS04555;old_locus_tag=RAF_ORF0809
NC_012633.1	Protein Homology	CDS	848198	848623	.	+	0	ID=cds-WP_041472031.1;Parent=gene-RAF_RS04555;Dbxref=GenBank:WP_041472031.1;Name=WP_041472031.1;Ontology_term=GO:0009306,GO:0015450,GO:0005886;gbkey=CDS;gene=yajC;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392334.1;locus_tag=RAF_RS04555;product=preprotein translocase subunit YajC;protein_id=WP_041472031.1;transl_table=11
NC_012633.1	RefSeq	gene	848607	850163	.	+	.	ID=gene-RAF_RS04560;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=RAF_RS04560;old_locus_tag=RAF_ORF0810
NC_012633.1	Protein Homology	CDS	848607	850163	.	+	0	ID=cds-WP_012719870.1;Parent=gene-RAF_RS04560;Dbxref=GenBank:WP_012719870.1;Name=WP_012719870.1;Ontology_term=GO:0006886,GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secD;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=intracellular protein transport|0006886||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477368.1;locus_tag=RAF_RS04560;product=protein translocase subunit SecD;protein_id=WP_012719870.1;transl_table=11
NC_012633.1	RefSeq	gene	850408	851028	.	+	.	ID=gene-RAF_RS04565;Name=RAF_RS04565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04565;old_locus_tag=RAF_ORF0811
NC_012633.1	Protein Homology	CDS	850408	851028	.	+	0	ID=cds-WP_012719871.1;Parent=gene-RAF_RS04565;Dbxref=GenBank:WP_012719871.1;Name=WP_012719871.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599005.1;locus_tag=RAF_RS04565;product=SCO family protein;protein_id=WP_012719871.1;transl_table=11
NC_012633.1	RefSeq	gene	851130	851516	.	+	.	ID=gene-RAF_RS04570;Name=ccmE;gbkey=Gene;gene=ccmE;gene_biotype=protein_coding;locus_tag=RAF_RS04570;old_locus_tag=RAF_ORF0813
NC_012633.1	Protein Homology	CDS	851130	851516	.	+	0	ID=cds-WP_012719873.1;Parent=gene-RAF_RS04570;Dbxref=GenBank:WP_012719873.1;Name=WP_012719873.1;gbkey=CDS;gene=ccmE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364868.1;locus_tag=RAF_RS04570;product=cytochrome c maturation protein CcmE;protein_id=WP_012719873.1;transl_table=11
NC_012633.1	RefSeq	gene	851642	852163	.	+	.	ID=gene-RAF_RS04575;Name=ppa;gbkey=Gene;gene=ppa;gene_biotype=protein_coding;locus_tag=RAF_RS04575;old_locus_tag=RAF_ORF0814
NC_012633.1	Protein Homology	CDS	851642	852163	.	+	0	ID=cds-WP_012719874.1;Parent=gene-RAF_RS04575;Dbxref=GenBank:WP_012719874.1;Name=WP_012719874.1;Ontology_term=GO:0006796,GO:0004427;gbkey=CDS;gene=ppa;go_function=inorganic diphosphate phosphatase activity|0004427||IEA;go_process=phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442392.1;locus_tag=RAF_RS04575;product=inorganic diphosphatase;protein_id=WP_012719874.1;transl_table=11
NC_012633.1	RefSeq	gene	852479	854041	.	+	.	ID=gene-RAF_RS04580;Name=murJ;gbkey=Gene;gene=murJ;gene_biotype=protein_coding;locus_tag=RAF_RS04580;old_locus_tag=RAF_ORF0815
NC_012633.1	Protein Homology	CDS	852479	854041	.	+	0	ID=cds-WP_410524342.1;Parent=gene-RAF_RS04580;Dbxref=GenBank:WP_410524342.1;Name=WP_410524342.1;Ontology_term=GO:0009252,GO:0034204;gbkey=CDS;gene=murJ;go_process=peptidoglycan biosynthetic process|0009252||IEA,lipid translocation|0034204||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151061.1;locus_tag=RAF_RS04580;product=murein biosynthesis integral membrane protein MurJ;protein_id=WP_410524342.1;transl_table=11
NC_012633.1	RefSeq	gene	854022	854774	.	+	.	ID=gene-RAF_RS04585;Name=RAF_RS04585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04585;old_locus_tag=RAF_ORF0816
NC_012633.1	Protein Homology	CDS	854022	854774	.	+	0	ID=cds-WP_012719876.1;Parent=gene-RAF_RS04585;Dbxref=GenBank:WP_012719876.1;Name=WP_012719876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364870.1;locus_tag=RAF_RS04585;product=TraX family protein;protein_id=WP_012719876.1;transl_table=11
NC_012633.1	RefSeq	gene	854848	855450	.	+	.	ID=gene-RAF_RS04590;Name=RAF_RS04590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04590;old_locus_tag=RAF_ORF0817
NC_012633.1	Protein Homology	CDS	854848	855450	.	+	0	ID=cds-WP_004998004.1;Parent=gene-RAF_RS04590;Dbxref=GenBank:WP_004998004.1;Name=WP_004998004.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014120977.1;locus_tag=RAF_RS04590;product=hypothetical protein;protein_id=WP_004998004.1;transl_table=11
NC_012633.1	RefSeq	gene	855658	857799	.	-	.	ID=gene-RAF_RS04595;Name=RAF_RS04595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04595;old_locus_tag=RAF_ORF0818
NC_012633.1	Protein Homology	CDS	855658	857799	.	-	0	ID=cds-WP_012719877.1;Parent=gene-RAF_RS04595;Dbxref=GenBank:WP_012719877.1;Name=WP_012719877.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0003678,GO:0005524,GO:0016887;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442396.1;locus_tag=RAF_RS04595;product=ATP-dependent DNA helicase RecG;protein_id=WP_012719877.1;transl_table=11
NC_012633.1	RefSeq	gene	858072	858644	.	-	.	ID=gene-RAF_RS09445;Name=RAF_RS09445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09445;old_locus_tag=RAF_ORF0819
NC_012633.1	Protein Homology	CDS	858072	858644	.	-	0	ID=cds-WP_012719878.1;Parent=gene-RAF_RS09445;Dbxref=GenBank:WP_012719878.1;Name=WP_012719878.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977503.1;locus_tag=RAF_RS09445;product=hypothetical protein;protein_id=WP_012719878.1;transl_table=11
NC_012633.1	RefSeq	gene	858713	858883	.	-	.	ID=gene-RAF_RS09980;Name=RAF_RS09980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09980
NC_012633.1	GeneMarkS-2+	CDS	858713	858883	.	-	0	ID=cds-WP_234943873.1;Parent=gene-RAF_RS09980;Dbxref=GenBank:WP_234943873.1;Name=WP_234943873.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09980;product=hypothetical protein;protein_id=WP_234943873.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	859166	859854	.	+	.	ID=gene-RAF_RS04610;Name=RAF_RS04610;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04610;old_locus_tag=RAF_ORF0820;pseudo=true
NC_012633.1	Protein Homology	CDS	859166	859854	.	+	0	ID=cds-RAF_RS04610;Parent=gene-RAF_RS04610;Note=frameshifted;Ontology_term=GO:0008410;gbkey=CDS;go_function=CoA-transferase activity|0008410||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007114900.1;locus_tag=RAF_RS04610;product=CoA transferase subunit A;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	859858	860493	.	+	.	ID=gene-RAF_RS04615;Name=RAF_RS04615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04615;old_locus_tag=RAF_ORF0821
NC_012633.1	Protein Homology	CDS	859858	860493	.	+	0	ID=cds-WP_012719880.1;Parent=gene-RAF_RS04615;Dbxref=GenBank:WP_012719880.1;Name=WP_012719880.1;Ontology_term=GO:0008410;gbkey=CDS;go_function=CoA-transferase activity|0008410||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442398.1;locus_tag=RAF_RS04615;product=3-oxoacid CoA-transferase subunit B;protein_id=WP_012719880.1;transl_table=11
NC_012633.1	RefSeq	gene	860697	860870	.	+	.	ID=gene-RAF_RS09985;Name=RAF_RS09985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09985
NC_012633.1	Protein Homology	CDS	860697	860870	.	+	0	ID=cds-WP_041471904.1;Parent=gene-RAF_RS09985;Dbxref=GenBank:WP_041471904.1;Name=WP_041471904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770310.1;locus_tag=RAF_RS09985;product=flavodoxin family protein;protein_id=WP_041471904.1;transl_table=11
NC_012633.1	RefSeq	gene	860867	861082	.	+	.	ID=gene-RAF_RS09990;Name=RAF_RS09990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09990
NC_012633.1	Protein Homology	CDS	860867	861082	.	+	0	ID=cds-WP_041471905.1;Parent=gene-RAF_RS09990;Dbxref=GenBank:WP_041471905.1;Name=WP_041471905.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409400.1;locus_tag=RAF_RS09990;product=hypothetical protein;protein_id=WP_041471905.1;transl_table=11
NC_012633.1	RefSeq	gene	861131	862624	.	-	.	ID=gene-RAF_RS04630;Name=rickA;gbkey=Gene;gene=rickA;gene_biotype=protein_coding;locus_tag=RAF_RS04630;old_locus_tag=RAF_ORF0824
NC_012633.1	Protein Homology	CDS	861131	862624	.	-	0	ID=cds-WP_041471906.1;Parent=gene-RAF_RS04630;Dbxref=GenBank:WP_041471906.1;Name=WP_041471906.1;gbkey=CDS;gene=rickA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362519.1;locus_tag=RAF_RS04630;product=Arp2/3 complex-activating protein RickA;protein_id=WP_041471906.1;transl_table=11
NC_012633.1	RefSeq	gene	862743	863828	.	-	.	ID=gene-RAF_RS04635;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=RAF_RS04635;old_locus_tag=RAF_ORF0825
NC_012633.1	Protein Homology	CDS	862743	863828	.	-	0	ID=cds-WP_012719882.1;Parent=gene-RAF_RS04635;Dbxref=GenBank:WP_012719882.1;Name=WP_012719882.1;Ontology_term=GO:0009252,GO:0008963,GO:0016020;gbkey=CDS;gene=mraY;go_component=membrane|0016020||IEA;go_function=phospho-N-acetylmuramoyl-pentapeptide-transferase activity|0008963||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442402.1;locus_tag=RAF_RS04635;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=WP_012719882.1;transl_table=11
NC_012633.1	RefSeq	gene	864023	865372	.	-	.	ID=gene-RAF_RS04640;Name=RAF_RS04640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04640;old_locus_tag=RAF_ORF0826
NC_012633.1	Protein Homology	CDS	864023	865372	.	-	0	ID=cds-WP_012719883.1;Parent=gene-RAF_RS04640;Dbxref=GenBank:WP_012719883.1;Name=WP_012719883.1;Ontology_term=GO:0009252,GO:0071555,GO:0005524,GO:0047480;gbkey=CDS;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity|0047480||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004597930.1;locus_tag=RAF_RS04640;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_012719883.1;transl_table=11
NC_012633.1	RefSeq	gene	865581	867020	.	-	.	ID=gene-RAF_RS04645;Name=RAF_RS04645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04645;old_locus_tag=RAF_ORF0827
NC_012633.1	Protein Homology	CDS	865581	867020	.	-	0	ID=cds-WP_012719884.1;Parent=gene-RAF_RS04645;Dbxref=GenBank:WP_012719884.1;Name=WP_012719884.1;Ontology_term=GO:0008360,GO:0009058,GO:0051301,GO:0005524,GO:0016881;gbkey=CDS;go_function=ATP binding|0005524||IEA,acid-amino acid ligase activity|0016881||IEA;go_process=regulation of cell shape|0008360||IEA,biosynthetic process|0009058||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977512.1;locus_tag=RAF_RS04645;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase;protein_id=WP_012719884.1;transl_table=11
NC_012633.1	RefSeq	gene	867167	870535	.	-	.	ID=gene-RAF_RS04650;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;locus_tag=RAF_RS04650;old_locus_tag=RAF_ORF0828
NC_012633.1	Protein Homology	CDS	867167	870535	.	-	0	ID=cds-WP_012719885.1;Parent=gene-RAF_RS04650;Dbxref=GenBank:WP_012719885.1;Name=WP_012719885.1;Ontology_term=GO:0006281,GO:0003684,GO:0005524;gbkey=CDS;gene=mfd;go_function=damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719885.1;locus_tag=RAF_RS04650;product=transcription-repair coupling factor;protein_id=WP_012719885.1;transl_table=11
NC_012633.1	RefSeq	gene	870547	870810	.	-	.	ID=gene-RAF_RS04655;Name=RAF_RS04655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04655;old_locus_tag=RAF_ORF0829
NC_012633.1	Protein Homology	CDS	870547	870810	.	-	0	ID=cds-WP_004997963.1;Parent=gene-RAF_RS04655;Dbxref=GenBank:WP_004997963.1;Name=WP_004997963.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442407.1;locus_tag=RAF_RS04655;product=succinate dehydrogenase assembly factor 2;protein_id=WP_004997963.1;transl_table=11
NC_012633.1	RefSeq	gene	870972	871343	.	+	.	ID=gene-RAF_RS04660;Name=RAF_RS04660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04660;old_locus_tag=RAF_ORF0830
NC_012633.1	Protein Homology	CDS	870972	871343	.	+	0	ID=cds-WP_004997961.1;Parent=gene-RAF_RS04660;Dbxref=GenBank:WP_004997961.1;Name=WP_004997961.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917638.1;locus_tag=RAF_RS04660;product=rhodanese-like domain-containing protein;protein_id=WP_004997961.1;transl_table=11
NC_012633.1	RefSeq	gene	871344	872735	.	+	.	ID=gene-RAF_RS04665;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=RAF_RS04665;old_locus_tag=RAF_ORF0831
NC_012633.1	Protein Homology	CDS	871344	872735	.	+	0	ID=cds-WP_012719886.1;Parent=gene-RAF_RS04665;Dbxref=GenBank:WP_012719886.1;Name=WP_012719886.1;Ontology_term=GO:0006270,GO:0006275,GO:0003677,GO:0003688,GO:0005524;gbkey=CDS;gene=dnaA;go_function=DNA binding|0003677||IEA,DNA replication origin binding|0003688||IEA,ATP binding|0005524||IEA;go_process=DNA replication initiation|0006270||IEA,regulation of DNA replication|0006275||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151731.1;locus_tag=RAF_RS04665;product=chromosomal replication initiator protein DnaA;protein_id=WP_012719886.1;transl_table=11
NC_012633.1	RefSeq	gene	873408	873530	.	+	.	ID=gene-RAF_RS09995;Name=RAF_RS09995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09995
NC_012633.1	Protein Homology	CDS	873408	873530	.	+	0	ID=cds-WP_231282938.1;Parent=gene-RAF_RS09995;Dbxref=GenBank:WP_231282938.1;Name=WP_231282938.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF039724.4;locus_tag=RAF_RS09995;product=DUF6314 family protein;protein_id=WP_231282938.1;transl_table=11
NC_012633.1	RefSeq	gene	873517	873735	.	-	.	ID=gene-RAF_RS04670;Name=RAF_RS04670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04670
NC_012633.1	Protein Homology	CDS	873517	873735	.	-	0	ID=cds-WP_148206973.1;Parent=gene-RAF_RS04670;Dbxref=GenBank:WP_148206973.1;Name=WP_148206973.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728281.1;locus_tag=RAF_RS04670;product=hypothetical protein;protein_id=WP_148206973.1;transl_table=11
NC_012633.1	RefSeq	gene	873795	874109	.	-	.	ID=gene-RAF_RS04675;Name=RAF_RS04675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04675
NC_012633.1	Protein Homology	CDS	873795	874109	.	-	0	ID=cds-WP_041471908.1;Parent=gene-RAF_RS04675;Dbxref=GenBank:WP_041471908.1;Name=WP_041471908.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926427.1;locus_tag=RAF_RS04675;product=hypothetical protein;protein_id=WP_041471908.1;transl_table=11
NC_012633.1	RefSeq	gene	874122	874679	.	-	.	ID=gene-RAF_RS04680;Name=RAF_RS04680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04680
NC_012633.1	GeneMarkS-2+	CDS	874122	874679	.	-	0	ID=cds-WP_234943874.1;Parent=gene-RAF_RS04680;Dbxref=GenBank:WP_234943874.1;Name=WP_234943874.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS04680;product=hypothetical protein;protein_id=WP_234943874.1;transl_table=11
NC_012633.1	RefSeq	gene	874832	874969	.	-	.	ID=gene-RAF_RS09455;Name=RAF_RS09455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09455
NC_012633.1	Protein Homology	CDS	874832	874969	.	-	0	ID=cds-WP_016728282.1;Parent=gene-RAF_RS09455;Dbxref=GenBank:WP_016728282.1;Name=WP_016728282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012262507.1;locus_tag=RAF_RS09455;product=hypothetical protein;protein_id=WP_016728282.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	875352	875670	.	-	.	ID=gene-RAF_RS04685;Name=RAF_RS04685;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04685;old_locus_tag=RAF_ORF0834;pseudo=true
NC_012633.1	Protein Homology	CDS	875352	875670	.	-	0	ID=cds-RAF_RS04685;Parent=gene-RAF_RS04685;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151081.1;locus_tag=RAF_RS04685;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	875866	877338	.	+	.	ID=gene-RAF_RS04690;Name=RAF_RS04690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04690;old_locus_tag=RAF_ORF0835
NC_012633.1	Protein Homology	CDS	875866	877338	.	+	0	ID=cds-WP_012719888.1;Parent=gene-RAF_RS04690;Dbxref=GenBank:WP_012719888.1;Name=WP_012719888.1;Ontology_term=GO:0006629;gbkey=CDS;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364884.1;locus_tag=RAF_RS04690;product=patatin-like phospholipase family protein;protein_id=WP_012719888.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	877527	878741	.	-	.	ID=gene-RAF_RS08815;Name=RAF_RS08815;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS08815;old_locus_tag=RAF_ORF0836;pseudo=true
NC_012633.1	Protein Homology	CDS	877527	878741	.	-	0	ID=cds-RAF_RS08815;Parent=gene-RAF_RS08815;Note=frameshifted%3B internal stop;Ontology_term=GO:0042908,GO:0042910,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic transport|0042908||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014120963.1;locus_tag=RAF_RS08815;product=Bcr/CflA family efflux MFS transporter;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	878848	878985	.	-	.	ID=gene-RAF_RS10000;Name=RAF_RS10000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10000
NC_012633.1	Protein Homology	CDS	878848	878985	.	-	0	ID=cds-WP_234943875.1;Parent=gene-RAF_RS10000;Dbxref=GenBank:WP_234943875.1;Name=WP_234943875.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997939.1;locus_tag=RAF_RS10000;product=hypothetical protein;protein_id=WP_234943875.1;transl_table=11
NC_012633.1	RefSeq	gene	878972	879211	.	-	.	ID=gene-RAF_RS10005;Name=RAF_RS10005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10005;old_locus_tag=RAF_ORF0839
NC_012633.1	Protein Homology	CDS	878972	879211	.	-	0	ID=cds-WP_041471910.1;Parent=gene-RAF_RS10005;Dbxref=GenBank:WP_041471910.1;Name=WP_041471910.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017020.5;locus_tag=RAF_RS10005;product=HEPN domain-containing protein;protein_id=WP_041471910.1;transl_table=11
NC_012633.1	RefSeq	gene	879421	879588	.	-	.	ID=gene-RAF_RS04715;Name=RAF_RS04715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04715
NC_012633.1	Protein Homology	CDS	879421	879588	.	-	0	ID=cds-WP_004997933.1;Parent=gene-RAF_RS04715;Dbxref=GenBank:WP_004997933.1;Name=WP_004997933.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419885.1;locus_tag=RAF_RS04715;product=nucleotidyltransferase domain-containing protein;protein_id=WP_004997933.1;transl_table=11
NC_012633.1	RefSeq	gene	879671	880768	.	-	.	ID=gene-RAF_RS04720;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=RAF_RS04720;old_locus_tag=RAF_ORF0841
NC_012633.1	Protein Homology	CDS	879671	880768	.	-	0	ID=cds-WP_010977527.1;Parent=gene-RAF_RS04720;Dbxref=GenBank:WP_010977527.1;Name=WP_010977527.1;Ontology_term=GO:0005524,GO:0005525,GO:0016887;gbkey=CDS;gene=ychF;go_function=ATP binding|0005524||IEA,GTP binding|0005525||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442415.1;locus_tag=RAF_RS04720;product=redox-regulated ATPase YchF;protein_id=WP_010977527.1;transl_table=11
NC_012633.1	RefSeq	gene	880765	880935	.	-	.	ID=gene-RAF_RS04725;Name=RAF_RS04725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04725;old_locus_tag=RAF_ORF0842
NC_012633.1	Protein Homology	CDS	880765	880935	.	-	0	ID=cds-WP_004997930.1;Parent=gene-RAF_RS04725;Dbxref=GenBank:WP_004997930.1;Name=WP_004997930.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997930.1;locus_tag=RAF_RS04725;product=GNAT family N-acetyltransferase;protein_id=WP_004997930.1;transl_table=11
NC_012633.1	RefSeq	gene	880962	881192	.	-	.	ID=gene-RAF_RS04730;Name=RAF_RS04730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04730
NC_012633.1	Protein Homology	CDS	880962	881192	.	-	0	ID=cds-WP_041471911.1;Parent=gene-RAF_RS04730;Dbxref=GenBank:WP_041471911.1;Name=WP_041471911.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945844.1;locus_tag=RAF_RS04730;product=hypothetical protein;protein_id=WP_041471911.1;transl_table=11
NC_012633.1	RefSeq	gene	881397	881954	.	-	.	ID=gene-RAF_RS04735;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;locus_tag=RAF_RS04735;old_locus_tag=RAF_ORF0843
NC_012633.1	Protein Homology	CDS	881397	881954	.	-	0	ID=cds-WP_012719889.1;Parent=gene-RAF_RS04735;Dbxref=GenBank:WP_012719889.1;Name=WP_012719889.1;Ontology_term=GO:0004045;gbkey=CDS;gene=pth;go_function=aminoacyl-tRNA hydrolase activity|0004045||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410909.1;locus_tag=RAF_RS04735;product=aminoacyl-tRNA hydrolase;protein_id=WP_012719889.1;transl_table=11
NC_012633.1	RefSeq	gene	882277	882888	.	-	.	ID=gene-RAF_RS04740;Name=RAF_RS04740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04740;old_locus_tag=RAF_ORF0844
NC_012633.1	Protein Homology	CDS	882277	882888	.	-	0	ID=cds-WP_012719890.1;Parent=gene-RAF_RS04740;Dbxref=GenBank:WP_012719890.1;Name=WP_012719890.1;Ontology_term=GO:0006412,GO:0003735,GO:0008097;gbkey=CDS;go_function=structural constituent of ribosome|0003735||IEA,5S rRNA binding|0008097||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012148496.1;locus_tag=RAF_RS04740;product=50S ribosomal protein L25/general stress protein Ctc;protein_id=WP_012719890.1;transl_table=11
NC_012633.1	RefSeq	gene	883634	884311	.	-	.	ID=gene-RAF_RS04745;Name=RAF_RS04745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04745;old_locus_tag=RAF_ORF0845
NC_012633.1	Protein Homology	CDS	883634	884311	.	-	0	ID=cds-WP_004997925.1;Parent=gene-RAF_RS04745;Dbxref=GenBank:WP_004997925.1;Name=WP_004997925.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008580802.1;locus_tag=RAF_RS04745;product=7-carboxy-7-deazaguanine synthase QueE;protein_id=WP_004997925.1;transl_table=11
NC_012633.1	RefSeq	gene	884478	884684	.	+	.	ID=gene-RAF_RS04750;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;locus_tag=RAF_RS04750;old_locus_tag=RAF_ORF0846
NC_012633.1	Protein Homology	CDS	884478	884684	.	+	0	ID=cds-WP_004997924.1;Parent=gene-RAF_RS04750;Dbxref=GenBank:WP_004997924.1;Name=WP_004997924.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477530.1;locus_tag=RAF_RS04750;product=50S ribosomal protein L35;protein_id=WP_004997924.1;transl_table=11
NC_012633.1	RefSeq	gene	884704	885057	.	+	.	ID=gene-RAF_RS04755;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=RAF_RS04755;old_locus_tag=RAF_ORF0847
NC_012633.1	Protein Homology	CDS	884704	885057	.	+	0	ID=cds-WP_004997919.1;Parent=gene-RAF_RS04755;Dbxref=GenBank:WP_004997919.1;Name=WP_004997919.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplT;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191043.1;locus_tag=RAF_RS04755;product=50S ribosomal protein L20;protein_id=WP_004997919.1;transl_table=11
NC_012633.1	RefSeq	gene	885140	885274	.	+	.	ID=gene-RAF_RS04760;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=RAF_RS04760;old_locus_tag=RAF_ORF0848
NC_012633.1	Protein Homology	CDS	885140	885274	.	+	0	ID=cds-WP_011270688.1;Parent=gene-RAF_RS04760;Dbxref=GenBank:WP_011270688.1;Name=WP_011270688.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmH;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005980833.1;locus_tag=RAF_RS04760;product=50S ribosomal protein L34;protein_id=WP_011270688.1;transl_table=11
NC_012633.1	RefSeq	gene	885294	885650	.	+	.	ID=gene-RAF_RS04765;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=RAF_RS04765;old_locus_tag=RAF_ORF0849
NC_012633.1	Protein Homology	CDS	885294	885650	.	+	0	ID=cds-WP_010977534.1;Parent=gene-RAF_RS04765;Dbxref=GenBank:WP_010977534.1;Name=WP_010977534.1;Ontology_term=GO:0008033,GO:0000049,GO:0004526;gbkey=CDS;gene=rnpA;go_function=tRNA binding|0000049||IEA,ribonuclease P activity|0004526||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191045.1;locus_tag=RAF_RS04765;product=ribonuclease P protein component;protein_id=WP_010977534.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	885656	885889	.	+	.	ID=gene-RAF_RS10785;Name=RAF_RS10785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10785;partial=true;pseudo=true;start_range=.,885656
NC_012633.1	Protein Homology	CDS	885656	885889	.	+	0	ID=cds-RAF_RS10785;Parent=gene-RAF_RS10785;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008580213.1;locus_tag=RAF_RS10785;partial=true;product=palindromic element RPE1 domain-containing protein;pseudo=true;start_range=.,885656;transl_table=11
NC_012633.1	RefSeq	gene	886159	888099	.	-	.	ID=gene-RAF_RS04770;Name=RAF_RS04770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04770;old_locus_tag=RAF_ORF0850
NC_012633.1	Protein Homology	CDS	886159	888099	.	-	0	ID=cds-WP_012719891.1;Parent=gene-RAF_RS04770;Dbxref=GenBank:WP_012719891.1;Name=WP_012719891.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151093.1;locus_tag=RAF_RS04770;product=hypothetical protein;protein_id=WP_012719891.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	888497	888756	.	-	.	ID=gene-RAF_RS04775;Name=RAF_RS04775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04775;pseudo=true
NC_012633.1	Protein Homology	CDS	888497	888756	.	-	0	ID=cds-RAF_RS04775;Parent=gene-RAF_RS04775;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977537.1;locus_tag=RAF_RS04775;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	889107	889253	.	-	.	ID=gene-RAF_RS09460;Name=RAF_RS09460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09460
NC_012633.1	Protein Homology	CDS	889107	889253	.	-	0	ID=cds-WP_016830870.1;Parent=gene-RAF_RS09460;Dbxref=GenBank:WP_016830870.1;Name=WP_016830870.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926437.1;locus_tag=RAF_RS09460;product=hypothetical protein;protein_id=WP_016830870.1;transl_table=11
NC_012633.1	RefSeq	gene	889273	889506	.	-	.	ID=gene-RAF_RS04780;Name=RAF_RS04780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04780
NC_012633.1	Protein Homology	CDS	889273	889506	.	-	0	ID=cds-WP_041471912.1;Parent=gene-RAF_RS04780;Dbxref=GenBank:WP_041471912.1;Name=WP_041471912.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917475.1;locus_tag=RAF_RS04780;product=hypothetical protein;protein_id=WP_041471912.1;transl_table=11
NC_012633.1	RefSeq	gene	889694	890011	.	-	.	ID=gene-RAF_RS04785;Name=RAF_RS04785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04785;old_locus_tag=RAF_ORF0851
NC_012633.1	Protein Homology	CDS	889694	890011	.	-	0	ID=cds-WP_012719892.1;Parent=gene-RAF_RS04785;Dbxref=GenBank:WP_012719892.1;Name=WP_012719892.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273663.1;locus_tag=RAF_RS04785;product=hypothetical protein;protein_id=WP_012719892.1;transl_table=11
NC_012633.1	RefSeq	gene	890229	891188	.	-	.	ID=gene-RAF_RS04790;Name=RAF_RS04790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04790;old_locus_tag=RAF_ORF0852
NC_012633.1	Protein Homology	CDS	890229	891188	.	-	0	ID=cds-WP_010977540.1;Parent=gene-RAF_RS04790;Dbxref=GenBank:WP_010977540.1;Name=WP_010977540.1;Ontology_term=GO:0030001,GO:0046873;gbkey=CDS;go_function=metal ion transmembrane transporter activity|0046873||IEA;go_process=metal ion transport|0030001||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442428.1;locus_tag=RAF_RS04790;product=magnesium transporter CorA family protein;protein_id=WP_010977540.1;transl_table=11
NC_012633.1	RefSeq	gene	891877	892260	.	-	.	ID=gene-RAF_RS08110;Name=RAF_RS08110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08110;old_locus_tag=RAF_ORF0853
NC_012633.1	Protein Homology	CDS	891877	892260	.	-	0	ID=cds-WP_012719893.1;Parent=gene-RAF_RS08110;Dbxref=GenBank:WP_012719893.1;Name=WP_012719893.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719893.1;locus_tag=RAF_RS08110;product=hypothetical protein;protein_id=WP_012719893.1;transl_table=11
NC_012633.1	RefSeq	gene	893136	894637	.	-	.	ID=gene-RAF_RS04800;Name=RAF_RS04800;gbkey=Gene;gene_biotype=rRNA;locus_tag=RAF_RS04800;old_locus_tag=RAF_RNA26
NC_012633.1	cmsearch	rRNA	893136	894637	.	-	.	ID=rna-RAF_RS04800;Parent=gene-RAF_RS04800;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS04800;product=16S ribosomal RNA
NC_012633.1	cmsearch	exon	893136	894637	.	-	.	ID=exon-RAF_RS04800-1;Parent=rna-RAF_RS04800;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS04800;product=16S ribosomal RNA
NC_012633.1	RefSeq	gene	894973	895551	.	-	.	ID=gene-RAF_RS04805;Name=RAF_RS04805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04805;old_locus_tag=RAF_ORF0854
NC_012633.1	Protein Homology	CDS	894973	895551	.	-	0	ID=cds-WP_041471913.1;Parent=gene-RAF_RS04805;Dbxref=GenBank:WP_041471913.1;Name=WP_041471913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926438.1;locus_tag=RAF_RS04805;product=phosphotransferase;protein_id=WP_041471913.1;transl_table=11
NC_012633.1	RefSeq	gene	895703	895849	.	-	.	ID=gene-RAF_RS09465;Name=RAF_RS09465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09465
NC_012633.1	Protein Homology	CDS	895703	895849	.	-	0	ID=cds-WP_014410918.1;Parent=gene-RAF_RS09465;Dbxref=GenBank:WP_014410918.1;Name=WP_014410918.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917471.1;locus_tag=RAF_RS09465;product=hypothetical protein;protein_id=WP_014410918.1;transl_table=11
NC_012633.1	RefSeq	gene	895942	897741	.	-	.	ID=gene-RAF_RS04815;Name=RAF_RS04815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04815;old_locus_tag=RAF_ORF0856
NC_012633.1	Protein Homology	CDS	895942	897741	.	-	0	ID=cds-WP_010977545.1;Parent=gene-RAF_RS04815;Dbxref=GenBank:WP_010977545.1;Name=WP_010977545.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014365583.1;locus_tag=RAF_RS04815;product=sensor histidine kinase NtrY-like;protein_id=WP_010977545.1;transl_table=11
NC_012633.1	RefSeq	gene	898108	898308	.	-	.	ID=gene-RAF_RS04820;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=RAF_RS04820;old_locus_tag=RAF_ORF0857
NC_012633.1	Protein Homology	CDS	898108	898308	.	-	0	ID=cds-WP_004997902.1;Parent=gene-RAF_RS04820;Dbxref=GenBank:WP_004997902.1;Name=WP_004997902.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsU;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997902.1;locus_tag=RAF_RS04820;product=30S ribosomal protein S21;protein_id=WP_004997902.1;transl_table=11
NC_012633.1	RefSeq	gene	898387	898998	.	+	.	ID=gene-RAF_RS04825;Name=RAF_RS04825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04825;old_locus_tag=RAF_ORF0858
NC_012633.1	Protein Homology	CDS	898387	898998	.	+	0	ID=cds-WP_041471914.1;Parent=gene-RAF_RS04825;Dbxref=GenBank:WP_041471914.1;Name=WP_041471914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442434.1;locus_tag=RAF_RS04825;product=COQ9 family protein;protein_id=WP_041471914.1;transl_table=11
NC_012633.1	RefSeq	gene	899041	899217	.	+	.	ID=gene-RAF_RS09470;Name=RAF_RS09470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09470
NC_012633.1	Protein Homology	CDS	899041	899217	.	+	0	ID=cds-WP_014410921.1;Parent=gene-RAF_RS09470;Dbxref=GenBank:WP_014410921.1;Name=WP_014410921.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410921.1;locus_tag=RAF_RS09470;product=hypothetical protein;protein_id=WP_014410921.1;transl_table=11
NC_012633.1	RefSeq	gene	899392	899547	.	+	.	ID=gene-RAF_RS09475;Name=RAF_RS09475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09475
NC_012633.1	Protein Homology	CDS	899392	899547	.	+	0	ID=cds-WP_200858169.1;Parent=gene-RAF_RS09475;Dbxref=GenBank:WP_200858169.1;Name=WP_200858169.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362393.1;locus_tag=RAF_RS09475;product=hypothetical protein;protein_id=WP_200858169.1;transl_table=11
NC_012633.1	RefSeq	gene	899627	899815	.	+	.	ID=gene-RAF_RS04835;Name=RAF_RS04835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04835
NC_012633.1	Protein Homology	CDS	899627	899815	.	+	0	ID=cds-WP_014410922.1;Parent=gene-RAF_RS04835;Dbxref=GenBank:WP_014410922.1;Name=WP_014410922.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410922.1;locus_tag=RAF_RS04835;product=hypothetical protein;protein_id=WP_014410922.1;transl_table=11
NC_012633.1	RefSeq	gene	899989	903267	.	+	.	ID=gene-RAF_RS04840;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=RAF_RS04840;old_locus_tag=RAF_ORF0859
NC_012633.1	Protein Homology	CDS	899989	903267	.	+	0	ID=cds-WP_012719895.1;Parent=gene-RAF_RS04840;Dbxref=GenBank:WP_012719895.1;Name=WP_012719895.1;Ontology_term=GO:0006428,GO:0000166,GO:0004822,GO:0005524;gbkey=CDS;gene=ileS;go_function=nucleotide binding|0000166||IEA,isoleucine-tRNA ligase activity|0004822||IEA,ATP binding|0005524||IEA;go_process=isoleucyl-tRNA aminoacylation|0006428||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012737033.1;locus_tag=RAF_RS04840;product=isoleucine--tRNA ligase;protein_id=WP_012719895.1;transl_table=11
NC_012633.1	RefSeq	gene	903355	903579	.	+	.	ID=gene-RAF_RS04845;Name=RAF_RS04845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04845
NC_012633.1	Protein Homology	CDS	903355	903579	.	+	0	ID=cds-WP_041471915.1;Parent=gene-RAF_RS04845;Dbxref=GenBank:WP_041471915.1;Name=WP_041471915.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410924.1;locus_tag=RAF_RS04845;product=hypothetical protein;protein_id=WP_041471915.1;transl_table=11
NC_012633.1	RefSeq	gene	903731	904012	.	+	.	ID=gene-RAF_RS08830;Name=RAF_RS08830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08830;old_locus_tag=RAF_ORF0860
NC_012633.1	Protein Homology	CDS	903731	904012	.	+	0	ID=cds-WP_012719896.1;Parent=gene-RAF_RS08830;Dbxref=GenBank:WP_012719896.1;Name=WP_012719896.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997894.1;locus_tag=RAF_RS08830;product=hypothetical protein;protein_id=WP_012719896.1;transl_table=11
NC_012633.1	RefSeq	gene	903991	904152	.	+	.	ID=gene-RAF_RS08835;Name=RAF_RS08835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08835
NC_012633.1	Protein Homology	CDS	903991	904152	.	+	0	ID=cds-WP_146709550.1;Parent=gene-RAF_RS08835;Dbxref=GenBank:WP_146709550.1;Name=WP_146709550.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: protein motif:HMM:NF024206.5;locus_tag=RAF_RS08835;product=ankyrin repeat domain-containing protein;protein_id=WP_146709550.1;transl_table=11
NC_012633.1	RefSeq	gene	904178	904372	.	+	.	ID=gene-RAF_RS04855;Name=RAF_RS04855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04855
NC_012633.1	Protein Homology	CDS	904178	904372	.	+	0	ID=cds-WP_012151109.1;Parent=gene-RAF_RS04855;Dbxref=GenBank:WP_012151109.1;Name=WP_012151109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151109.1;locus_tag=RAF_RS04855;product=hypothetical protein;protein_id=WP_012151109.1;transl_table=11
NC_012633.1	RefSeq	gene	905074	905301	.	+	.	ID=gene-RAF_RS04860;Name=RAF_RS04860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04860;old_locus_tag=RAF_ORF0861
NC_012633.1	Protein Homology	CDS	905074	905301	.	+	0	ID=cds-WP_012719897.1;Parent=gene-RAF_RS04860;Dbxref=GenBank:WP_012719897.1;Name=WP_012719897.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014014593.1;locus_tag=RAF_RS04860;product=tetratricopeptide repeat protein;protein_id=WP_012719897.1;transl_table=11
NC_012633.1	RefSeq	gene	905467	905619	.	-	.	ID=gene-RAF_RS09480;Name=RAF_RS09480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09480
NC_012633.1	Protein Homology	CDS	905467	905619	.	-	0	ID=cds-WP_010977554.1;Parent=gene-RAF_RS09480;Dbxref=GenBank:WP_010977554.1;Name=WP_010977554.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770436.1;locus_tag=RAF_RS09480;product=hypothetical protein;protein_id=WP_010977554.1;transl_table=11
NC_012633.1	RefSeq	gene	905612	907609	.	-	.	ID=gene-RAF_RS04865;Name=RAF_RS04865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04865;old_locus_tag=RAF_ORF0862
NC_012633.1	Protein Homology	CDS	905612	907609	.	-	0	ID=cds-WP_012719898.1;Parent=gene-RAF_RS04865;Dbxref=GenBank:WP_012719898.1;Name=WP_012719898.1;Ontology_term=GO:0005524,GO:0046872;gbkey=CDS;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014408880.1;locus_tag=RAF_RS04865;product=acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha;protein_id=WP_012719898.1;transl_table=11
NC_012633.1	RefSeq	gene	907707	909251	.	-	.	ID=gene-RAF_RS04870;Name=RAF_RS04870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04870;old_locus_tag=RAF_ORF0863
NC_012633.1	Protein Homology	CDS	907707	909251	.	-	0	ID=cds-WP_012719899.1;Parent=gene-RAF_RS04870;Dbxref=GenBank:WP_012719899.1;Name=WP_012719899.1;Ontology_term=GO:0006633,GO:0003989,GO:0016874,GO:0009317;gbkey=CDS;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA,ligase activity|0016874||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442440.1;locus_tag=RAF_RS04870;product=acyl-CoA carboxylase subunit beta;protein_id=WP_012719899.1;transl_table=11
NC_012633.1	RefSeq	gene	909327	909575	.	+	.	ID=gene-RAF_RS04875;Name=RAF_RS04875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04875;old_locus_tag=RAF_ORF0864
NC_012633.1	Protein Homology	CDS	909327	909575	.	+	0	ID=cds-WP_012719900.1;Parent=gene-RAF_RS04875;Dbxref=GenBank:WP_012719900.1;Name=WP_012719900.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977557.1;locus_tag=RAF_RS04875;product=hypothetical protein;protein_id=WP_012719900.1;transl_table=11
NC_012633.1	RefSeq	gene	909810	913232	.	+	.	ID=gene-RAF_RS04880;Name=RAF_RS04880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04880;old_locus_tag=RAF_ORF0865
NC_012633.1	Protein Homology	CDS	909810	913232	.	+	0	ID=cds-WP_012719901.1;Parent=gene-RAF_RS04880;Dbxref=GenBank:WP_012719901.1;Name=WP_012719901.1;Ontology_term=GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442442.1;locus_tag=RAF_RS04880;product=acyl-[ACP]--phospholipid O-acyltransferase;protein_id=WP_012719901.1;transl_table=11
NC_012633.1	RefSeq	gene	913499	913705	.	-	.	ID=gene-RAF_RS04885;Name=RAF_RS04885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04885;old_locus_tag=RAF_ORF0866
NC_012633.1	Protein Homology	CDS	913499	913705	.	-	0	ID=cds-WP_012719902.1;Parent=gene-RAF_RS04885;Dbxref=GenBank:WP_012719902.1;Name=WP_012719902.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917459.1;locus_tag=RAF_RS04885;product=TfoX/Sxy family protein;protein_id=WP_012719902.1;transl_table=11
NC_012633.1	RefSeq	gene	913702	914463	.	-	.	ID=gene-RAF_RS04890;Name=RAF_RS04890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04890;old_locus_tag=RAF_ORF0867
NC_012633.1	Protein Homology	CDS	913702	914463	.	-	0	ID=cds-WP_004997884.1;Parent=gene-RAF_RS04890;Dbxref=GenBank:WP_004997884.1;Name=WP_004997884.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270750.1;locus_tag=RAF_RS04890;product=metal ABC transporter permease;protein_id=WP_004997884.1;transl_table=11
NC_012633.1	RefSeq	gene	914601	915470	.	+	.	ID=gene-RAF_RS04895;Name=ubiG;gbkey=Gene;gene=ubiG;gene_biotype=protein_coding;locus_tag=RAF_RS04895;old_locus_tag=RAF_ORF0868
NC_012633.1	Protein Homology	CDS	914601	915470	.	+	0	ID=cds-WP_012719903.1;Parent=gene-RAF_RS04895;Dbxref=GenBank:WP_012719903.1;Name=WP_012719903.1;Ontology_term=GO:0006744,GO:0061542;gbkey=CDS;gene=ubiG;go_function=3-demethylubiquinol-n 3-O-methyltransferase activity|0061542||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364904.1;locus_tag=RAF_RS04895;product=bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG;protein_id=WP_012719903.1;transl_table=11
NC_012633.1	RefSeq	gene	915769	917310	.	+	.	ID=gene-RAF_RS04900;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=RAF_RS04900;old_locus_tag=RAF_ORF0869
NC_012633.1	Protein Homology	CDS	915769	917310	.	+	0	ID=cds-WP_012719904.1;Parent=gene-RAF_RS04900;Dbxref=GenBank:WP_012719904.1;Name=WP_012719904.1;Ontology_term=GO:0006424,GO:0000166,GO:0004818,GO:0005524;gbkey=CDS;gene=gltX;go_function=nucleotide binding|0000166||IEA,glutamate-tRNA ligase activity|0004818||IEA,ATP binding|0005524||IEA;go_process=glutamyl-tRNA aminoacylation|0006424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997880.1;locus_tag=RAF_RS04900;product=glutamate--tRNA ligase;protein_id=WP_012719904.1;transl_table=11
NC_012633.1	RefSeq	gene	917307	917843	.	+	.	ID=gene-RAF_RS04905;Name=RAF_RS04905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04905;old_locus_tag=RAF_ORF0870
NC_012633.1	Protein Homology	CDS	917307	917843	.	+	0	ID=cds-WP_012719905.1;Parent=gene-RAF_RS04905;Dbxref=GenBank:WP_012719905.1;Name=WP_012719905.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442447.1;locus_tag=RAF_RS04905;product=invasion associated locus B family protein;protein_id=WP_012719905.1;transl_table=11
NC_012633.1	RefSeq	gene	918802	920445	.	-	.	ID=gene-RAF_RS04910;Name=groL;gbkey=Gene;gene=groL;gene_biotype=protein_coding;locus_tag=RAF_RS04910;old_locus_tag=RAF_ORF0871
NC_012633.1	Protein Homology	CDS	918802	920445	.	-	0	ID=cds-WP_012719906.1;Parent=gene-RAF_RS04910;Dbxref=GenBank:WP_012719906.1;Name=WP_012719906.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds;Ontology_term=GO:0042026,GO:0140662;gbkey=CDS;gene=groL;go_function=ATP-dependent protein folding chaperone|0140662||IEA;go_process=protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012149871.1;locus_tag=RAF_RS04910;product=chaperonin GroEL;protein_id=WP_012719906.1;transl_table=11
NC_012633.1	RefSeq	gene	920473	920760	.	-	.	ID=gene-RAF_RS04915;Name=RAF_RS04915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04915;old_locus_tag=RAF_ORF0872
NC_012633.1	Protein Homology	CDS	920473	920760	.	-	0	ID=cds-WP_041471916.1;Parent=gene-RAF_RS04915;Dbxref=GenBank:WP_041471916.1;Name=WP_041471916.1;Ontology_term=GO:0005524,GO:0140662;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP-dependent protein folding chaperone|0140662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442455.1;locus_tag=RAF_RS04915;product=co-chaperone GroES;protein_id=WP_041471916.1;transl_table=11
NC_012633.1	RefSeq	gene	920982	921395	.	-	.	ID=gene-RAF_RS10010;Name=RAF_RS10010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10010
NC_012633.1	Protein Homology	CDS	920982	921395	.	-	0	ID=cds-WP_234943944.1;Parent=gene-RAF_RS10010;Dbxref=GenBank:WP_234943944.1;Name=WP_234943944.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: protein motif:HMM:NF025017.5;locus_tag=RAF_RS10010;product=glycosyltransferase;protein_id=WP_234943944.1;transl_table=11
NC_012633.1	RefSeq	gene	921727	922167	.	-	.	ID=gene-RAF_RS10015;Name=RAF_RS10015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10015
NC_012633.1	GeneMarkS-2+	CDS	921727	922167	.	-	0	ID=cds-WP_231282942.1;Parent=gene-RAF_RS10015;Dbxref=GenBank:WP_231282942.1;Name=WP_231282942.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10015;product=hypothetical protein;protein_id=WP_231282942.1;transl_table=11
NC_012633.1	RefSeq	gene	922133	922780	.	-	.	ID=gene-RAF_RS10020;Name=RAF_RS10020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10020
NC_012633.1	Protein Homology	CDS	922133	922780	.	-	0	ID=cds-WP_041471917.1;Parent=gene-RAF_RS10020;Dbxref=GenBank:WP_041471917.1;Name=WP_041471917.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997867.1;locus_tag=RAF_RS10020;product=hypothetical protein;protein_id=WP_041471917.1;transl_table=11
NC_012633.1	RefSeq	gene	922814	923296	.	-	.	ID=gene-RAF_RS04935;Name=RAF_RS04935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04935;old_locus_tag=RAF_ORF0876
NC_012633.1	Protein Homology	CDS	922814	923296	.	-	0	ID=cds-WP_012719908.1;Parent=gene-RAF_RS04935;Dbxref=GenBank:WP_012719908.1;Name=WP_012719908.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719908.1;locus_tag=RAF_RS04935;product=hypothetical protein;protein_id=WP_012719908.1;transl_table=11
NC_012633.1	RefSeq	gene	923673	923843	.	+	.	ID=gene-RAF_RS10025;Name=RAF_RS10025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10025
NC_012633.1	GeneMarkS-2+	CDS	923673	923843	.	+	0	ID=cds-WP_234943877.1;Parent=gene-RAF_RS10025;Dbxref=GenBank:WP_234943877.1;Name=WP_234943877.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10025;product=hypothetical protein;protein_id=WP_234943877.1;transl_table=11
NC_012633.1	RefSeq	gene	923998	924717	.	-	.	ID=gene-RAF_RS04945;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=RAF_RS04945;old_locus_tag=RAF_ORF0877
NC_012633.1	Protein Homology	CDS	923998	924717	.	-	0	ID=cds-WP_010977568.1;Parent=gene-RAF_RS04945;Dbxref=GenBank:WP_010977568.1;Name=WP_010977568.1;Ontology_term=GO:0008033,GO:0000049,GO:0009022;gbkey=CDS;gene=rph;go_function=tRNA binding|0000049||IEA,tRNA nucleotidyltransferase activity|0009022||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270738.1;locus_tag=RAF_RS04945;product=ribonuclease PH;protein_id=WP_010977568.1;transl_table=11
NC_012633.1	RefSeq	gene	924941	925477	.	+	.	ID=gene-RAF_RS04950;Name=grpE;gbkey=Gene;gene=grpE;gene_biotype=protein_coding;locus_tag=RAF_RS04950;old_locus_tag=RAF_ORF0878
NC_012633.1	Protein Homology	CDS	924941	925477	.	+	0	ID=cds-WP_010977570.1;Parent=gene-RAF_RS04950;Dbxref=GenBank:WP_010977570.1;Name=WP_010977570.1;gbkey=CDS;gene=grpE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596256.1;locus_tag=RAF_RS04950;product=nucleotide exchange factor GrpE;protein_id=WP_010977570.1;transl_table=11
NC_012633.1	RefSeq	gene	925621	926676	.	+	.	ID=gene-RAF_RS04955;Name=RAF_RS04955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04955;old_locus_tag=RAF_ORF0879
NC_012633.1	Protein Homology	CDS	925621	926676	.	+	0	ID=cds-WP_041471918.1;Parent=gene-RAF_RS04955;Dbxref=GenBank:WP_041471918.1;Name=WP_041471918.1;Ontology_term=GO:0055085,GO:1905887,GO:0015562;gbkey=CDS;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA,autoinducer AI-2 transmembrane transport|1905887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997853.1;locus_tag=RAF_RS04955;product=AI-2E family transporter;protein_id=WP_041471918.1;transl_table=11
NC_012633.1	RefSeq	gene	926692	927360	.	+	.	ID=gene-RAF_RS04960;Name=RAF_RS04960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04960;old_locus_tag=RAF_ORF0880
NC_012633.1	Protein Homology	CDS	926692	927360	.	+	0	ID=cds-WP_010977572.1;Parent=gene-RAF_RS04960;Dbxref=GenBank:WP_010977572.1;Name=WP_010977572.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442466.1;locus_tag=RAF_RS04960;product=HdaA/DnaA family protein;protein_id=WP_010977572.1;transl_table=11
NC_012633.1	RefSeq	gene	927668	927910	.	+	.	ID=gene-RAF_RS04965;Name=RAF_RS04965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04965;old_locus_tag=RAF_ORF0881
NC_012633.1	GeneMarkS-2+	CDS	927668	927910	.	+	0	ID=cds-WP_012719910.1;Parent=gene-RAF_RS04965;Dbxref=GenBank:WP_012719910.1;Name=WP_012719910.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS04965;product=hypothetical protein;protein_id=WP_012719910.1;transl_table=11
NC_012633.1	RefSeq	gene	928441	928614	.	+	.	ID=gene-RAF_RS04975;Name=RAF_RS04975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04975
NC_012633.1	Protein Homology	CDS	928441	928614	.	+	0	ID=cds-WP_032849909.1;Parent=gene-RAF_RS04975;Dbxref=GenBank:WP_032849909.1;Name=WP_032849909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410941.1;locus_tag=RAF_RS04975;product=hypothetical protein;protein_id=WP_032849909.1;transl_table=11
NC_012633.1	RefSeq	gene	928659	928892	.	-	.	ID=gene-RAF_RS04980;Name=RAF_RS04980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04980;old_locus_tag=RAF_ORF0882
NC_012633.1	Protein Homology	CDS	928659	928892	.	-	0	ID=cds-WP_012719911.1;Parent=gene-RAF_RS04980;Dbxref=GenBank:WP_012719911.1;Name=WP_012719911.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442468.1;locus_tag=RAF_RS04980;product=hypothetical protein;protein_id=WP_012719911.1;transl_table=11
NC_012633.1	RefSeq	gene	928991	929260	.	+	.	ID=gene-RAF_RS04985;Name=RAF_RS04985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04985
NC_012633.1	Protein Homology	CDS	928991	929260	.	+	0	ID=cds-WP_041471920.1;Parent=gene-RAF_RS04985;Dbxref=GenBank:WP_041471920.1;Name=WP_041471920.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419899.1;locus_tag=RAF_RS04985;product=hypothetical protein;protein_id=WP_041471920.1;transl_table=11
NC_012633.1	RefSeq	gene	929458	929625	.	+	.	ID=gene-RAF_RS09485;Name=RAF_RS09485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09485
NC_012633.1	Protein Homology	CDS	929458	929625	.	+	0	ID=cds-WP_200858170.1;Parent=gene-RAF_RS09485;Dbxref=GenBank:WP_200858170.1;Name=WP_200858170.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728299.1;locus_tag=RAF_RS09485;product=hypothetical protein;protein_id=WP_200858170.1;transl_table=11
NC_012633.1	RefSeq	gene	929755	930114	.	+	.	ID=gene-RAF_RS04995;Name=RAF_RS04995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04995
NC_012633.1	Protein Homology	CDS	929755	930114	.	+	0	ID=cds-WP_041471922.1;Parent=gene-RAF_RS04995;Dbxref=GenBank:WP_041471922.1;Name=WP_041471922.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728300.1;locus_tag=RAF_RS04995;product=hypothetical protein;protein_id=WP_041471922.1;transl_table=11
NC_012633.1	RefSeq	gene	930324	930399	.	-	.	ID=gene-RAF_RS05000;Name=RAF_RS05000;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS05000;old_locus_tag=RAF_RNA27
NC_012633.1	tRNAscan-SE	tRNA	930324	930399	.	-	.	ID=rna-RAF_RS05000;Parent=gene-RAF_RS05000;anticodon=(pos:complement(930364..930366));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS05000;product=tRNA-Val
NC_012633.1	tRNAscan-SE	exon	930324	930399	.	-	.	ID=exon-RAF_RS05000-1;Parent=rna-RAF_RS05000;anticodon=(pos:complement(930364..930366));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS05000;product=tRNA-Val
NC_012633.1	RefSeq	gene	930496	930774	.	-	.	ID=gene-RAF_RS05005;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=RAF_RS05005;old_locus_tag=RAF_ORF0886
NC_012633.1	Protein Homology	CDS	930496	930774	.	-	0	ID=cds-WP_004997845.1;Parent=gene-RAF_RS05005;Dbxref=GenBank:WP_004997845.1;Name=WP_004997845.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsT;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997845.1;locus_tag=RAF_RS05005;product=30S ribosomal protein S20;protein_id=WP_004997845.1;transl_table=11
NC_012633.1	RefSeq	gene	930793	931203	.	-	.	ID=gene-RAF_RS05010;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=RAF_RS05010;old_locus_tag=RAF_ORF0887
NC_012633.1	Protein Homology	CDS	930793	931203	.	-	0	ID=cds-WP_012719912.1;Parent=gene-RAF_RS05010;Dbxref=GenBank:WP_012719912.1;Name=WP_012719912.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012148969.1;locus_tag=RAF_RS05010;product=50S ribosomal protein L17;protein_id=WP_012719912.1;transl_table=11
NC_012633.1	RefSeq	gene	931214	932236	.	-	.	ID=gene-RAF_RS05015;Name=RAF_RS05015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05015;old_locus_tag=RAF_ORF0888
NC_012633.1	Protein Homology	CDS	931214	932236	.	-	0	ID=cds-WP_012719913.1;Parent=gene-RAF_RS05015;Dbxref=GenBank:WP_012719913.1;Name=WP_012719913.1;Ontology_term=GO:0006351,GO:0003899;gbkey=CDS;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477697.1;locus_tag=RAF_RS05015;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_012719913.1;transl_table=11
NC_012633.1	RefSeq	gene	932255	932638	.	-	.	ID=gene-RAF_RS05020;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;locus_tag=RAF_RS05020;old_locus_tag=RAF_ORF0889
NC_012633.1	Protein Homology	CDS	932255	932638	.	-	0	ID=cds-WP_004997839.1;Parent=gene-RAF_RS05020;Dbxref=GenBank:WP_004997839.1;Name=WP_004997839.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010421782.1;locus_tag=RAF_RS05020;product=30S ribosomal protein S11;protein_id=WP_004997839.1;transl_table=11
NC_012633.1	RefSeq	gene	932663	933040	.	-	.	ID=gene-RAF_RS05025;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;locus_tag=RAF_RS05025;old_locus_tag=RAF_ORF0890
NC_012633.1	Protein Homology	CDS	932663	933040	.	-	0	ID=cds-WP_004997837.1;Parent=gene-RAF_RS05025;Dbxref=GenBank:WP_004997837.1;Name=WP_004997837.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsM;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012153027.1;locus_tag=RAF_RS05025;product=30S ribosomal protein S13;protein_id=WP_004997837.1;transl_table=11
NC_012633.1	RefSeq	gene	933099	933737	.	-	.	ID=gene-RAF_RS05030;Name=RAF_RS05030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05030;old_locus_tag=RAF_ORF0891
NC_012633.1	Protein Homology	CDS	933099	933737	.	-	0	ID=cds-WP_012719914.1;Parent=gene-RAF_RS05030;Dbxref=GenBank:WP_012719914.1;Name=WP_012719914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191072.1;locus_tag=RAF_RS05030;product=adenylate kinase;protein_id=WP_012719914.1;transl_table=11
NC_012633.1	RefSeq	gene	933753	935054	.	-	.	ID=gene-RAF_RS05035;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=RAF_RS05035;old_locus_tag=RAF_ORF0892
NC_012633.1	Protein Homology	CDS	933753	935054	.	-	0	ID=cds-WP_012719915.1;Parent=gene-RAF_RS05035;Dbxref=GenBank:WP_012719915.1;Name=WP_012719915.1;Ontology_term=GO:0015031,GO:0043952,GO:0016020;gbkey=CDS;gene=secY;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477701.1;locus_tag=RAF_RS05035;product=preprotein translocase subunit SecY;protein_id=WP_012719915.1;transl_table=11
NC_012633.1	RefSeq	gene	935058	935519	.	-	.	ID=gene-RAF_RS05040;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=protein_coding;locus_tag=RAF_RS05040;old_locus_tag=RAF_ORF0893
NC_012633.1	Protein Homology	CDS	935058	935519	.	-	0	ID=cds-WP_004997829.1;Parent=gene-RAF_RS05040;Dbxref=GenBank:WP_004997829.1;Name=WP_004997829.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplO;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191074.1;locus_tag=RAF_RS05040;product=50S ribosomal protein L15;protein_id=WP_004997829.1;transl_table=11
NC_012633.1	RefSeq	gene	935533	935724	.	-	.	ID=gene-RAF_RS05045;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=RAF_RS05045;old_locus_tag=RAF_ORF0894
NC_012633.1	Protein Homology	CDS	935533	935724	.	-	0	ID=cds-WP_004997827.1;Parent=gene-RAF_RS05045;Dbxref=GenBank:WP_004997827.1;Name=WP_004997827.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rpmD;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191075.1;locus_tag=RAF_RS05045;product=50S ribosomal protein L30;protein_id=WP_004997827.1;transl_table=11
NC_012633.1	RefSeq	gene	935748	936278	.	-	.	ID=gene-RAF_RS05050;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;locus_tag=RAF_RS05050;old_locus_tag=RAF_ORF0895
NC_012633.1	Protein Homology	CDS	935748	936278	.	-	0	ID=cds-WP_004997826.1;Parent=gene-RAF_RS05050;Dbxref=GenBank:WP_004997826.1;Name=WP_004997826.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsE;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596227.1;locus_tag=RAF_RS05050;product=30S ribosomal protein S5;protein_id=WP_004997826.1;transl_table=11
NC_012633.1	RefSeq	gene	936296	936652	.	-	.	ID=gene-RAF_RS05055;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;locus_tag=RAF_RS05055;old_locus_tag=RAF_ORF0896
NC_012633.1	Protein Homology	CDS	936296	936652	.	-	0	ID=cds-WP_004997824.1;Parent=gene-RAF_RS05055;Dbxref=GenBank:WP_004997824.1;Name=WP_004997824.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplR;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191077.1;locus_tag=RAF_RS05055;product=50S ribosomal protein L18;protein_id=WP_004997824.1;transl_table=11
NC_012633.1	RefSeq	gene	936668	937201	.	-	.	ID=gene-RAF_RS05060;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;locus_tag=RAF_RS05060;old_locus_tag=RAF_ORF0897
NC_012633.1	Protein Homology	CDS	936668	937201	.	-	0	ID=cds-WP_012719916.1;Parent=gene-RAF_RS05060;Dbxref=GenBank:WP_012719916.1;Name=WP_012719916.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0005840;gbkey=CDS;gene=rplF;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477706.1;locus_tag=RAF_RS05060;product=50S ribosomal protein L6;protein_id=WP_012719916.1;transl_table=11
NC_012633.1	RefSeq	gene	937210	937608	.	-	.	ID=gene-RAF_RS05065;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;locus_tag=RAF_RS05065;old_locus_tag=RAF_ORF0898
NC_012633.1	Protein Homology	CDS	937210	937608	.	-	0	ID=cds-WP_010977581.1;Parent=gene-RAF_RS05065;Dbxref=GenBank:WP_010977581.1;Name=WP_010977581.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsH;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012153035.1;locus_tag=RAF_RS05065;product=30S ribosomal protein S8;protein_id=WP_010977581.1;transl_table=11
NC_012633.1	RefSeq	gene	937628	937933	.	-	.	ID=gene-RAF_RS05070;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=RAF_RS05070;old_locus_tag=RAF_ORF0899
NC_012633.1	Protein Homology	CDS	937628	937933	.	-	0	ID=cds-WP_008580947.1;Parent=gene-RAF_RS05070;Dbxref=GenBank:WP_008580947.1;Name=WP_008580947.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsN;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596221.1;locus_tag=RAF_RS05070;product=30S ribosomal protein S14;protein_id=WP_008580947.1;transl_table=11
NC_012633.1	RefSeq	gene	937951	938490	.	-	.	ID=gene-RAF_RS05075;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;locus_tag=RAF_RS05075;old_locus_tag=RAF_ORF0900
NC_012633.1	Protein Homology	CDS	937951	938490	.	-	0	ID=cds-WP_010977582.1;Parent=gene-RAF_RS05075;Dbxref=GenBank:WP_010977582.1;Name=WP_010977582.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008580949.1;locus_tag=RAF_RS05075;product=50S ribosomal protein L5;protein_id=WP_010977582.1;transl_table=11
NC_012633.1	RefSeq	gene	938490	938819	.	-	.	ID=gene-RAF_RS05080;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=RAF_RS05080;old_locus_tag=RAF_ORF0901
NC_012633.1	Protein Homology	CDS	938490	938819	.	-	0	ID=cds-WP_004997814.1;Parent=gene-RAF_RS05080;Dbxref=GenBank:WP_004997814.1;Name=WP_004997814.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplX;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012153038.1;locus_tag=RAF_RS05080;product=50S ribosomal protein L24;protein_id=WP_004997814.1;transl_table=11
NC_012633.1	RefSeq	gene	938820	939188	.	-	.	ID=gene-RAF_RS05085;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;locus_tag=RAF_RS05085;old_locus_tag=RAF_ORF0902
NC_012633.1	Protein Homology	CDS	938820	939188	.	-	0	ID=cds-WP_004997813.1;Parent=gene-RAF_RS05085;Dbxref=GenBank:WP_004997813.1;Name=WP_004997813.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplN;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012728338.1;locus_tag=RAF_RS05085;product=50S ribosomal protein L14;protein_id=WP_004997813.1;transl_table=11
NC_012633.1	RefSeq	gene	939263	939496	.	-	.	ID=gene-RAF_RS05090;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;locus_tag=RAF_RS05090;old_locus_tag=RAF_ORF0903
NC_012633.1	Protein Homology	CDS	939263	939496	.	-	0	ID=cds-WP_008580954.1;Parent=gene-RAF_RS05090;Dbxref=GenBank:WP_008580954.1;Name=WP_008580954.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012148985.1;locus_tag=RAF_RS05090;product=30S ribosomal protein S17;protein_id=WP_008580954.1;transl_table=11
NC_012633.1	RefSeq	gene	939498	939713	.	-	.	ID=gene-RAF_RS05095;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=RAF_RS05095;old_locus_tag=RAF_ORF0904
NC_012633.1	Protein Homology	CDS	939498	939713	.	-	0	ID=cds-WP_004997809.1;Parent=gene-RAF_RS05095;Dbxref=GenBank:WP_004997809.1;Name=WP_004997809.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997809.1;locus_tag=RAF_RS05095;product=50S ribosomal protein L29;protein_id=WP_004997809.1;transl_table=11
NC_012633.1	RefSeq	gene	939706	940116	.	-	.	ID=gene-RAF_RS05100;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=RAF_RS05100;old_locus_tag=RAF_ORF0905
NC_012633.1	Protein Homology	CDS	939706	940116	.	-	0	ID=cds-WP_012719918.1;Parent=gene-RAF_RS05100;Dbxref=GenBank:WP_012719918.1;Name=WP_012719918.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843;gbkey=CDS;gene=rplP;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477714.1;locus_tag=RAF_RS05100;product=50S ribosomal protein L16;protein_id=WP_012719918.1;transl_table=11
NC_012633.1	RefSeq	gene	940131	940784	.	-	.	ID=gene-RAF_RS05105;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=RAF_RS05105;old_locus_tag=RAF_ORF0906
NC_012633.1	Protein Homology	CDS	940131	940784	.	-	0	ID=cds-WP_010977584.1;Parent=gene-RAF_RS05105;Dbxref=GenBank:WP_010977584.1;Name=WP_010977584.1;Ontology_term=GO:0006412,GO:0003735;gbkey=CDS;gene=rpsC;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977584.1;locus_tag=RAF_RS05105;product=30S ribosomal protein S3;protein_id=WP_010977584.1;transl_table=11
NC_012633.1	RefSeq	gene	940786	941145	.	-	.	ID=gene-RAF_RS05110;Name=rplV;gbkey=Gene;gene=rplV;gene_biotype=protein_coding;locus_tag=RAF_RS05110;old_locus_tag=RAF_ORF0907
NC_012633.1	Protein Homology	CDS	940786	941145	.	-	0	ID=cds-WP_004997796.1;Parent=gene-RAF_RS05110;Dbxref=GenBank:WP_004997796.1;Name=WP_004997796.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplV;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977585.1;locus_tag=RAF_RS05110;product=50S ribosomal protein L22;protein_id=WP_004997796.1;transl_table=11
NC_012633.1	RefSeq	gene	941154	941432	.	-	.	ID=gene-RAF_RS05115;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;locus_tag=RAF_RS05115;old_locus_tag=RAF_ORF0908
NC_012633.1	Protein Homology	CDS	941154	941432	.	-	0	ID=cds-WP_004997794.1;Parent=gene-RAF_RS05115;Dbxref=GenBank:WP_004997794.1;Name=WP_004997794.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsS;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477717.1;locus_tag=RAF_RS05115;product=30S ribosomal protein S19;protein_id=WP_004997794.1;transl_table=11
NC_012633.1	RefSeq	gene	941457	942278	.	-	.	ID=gene-RAF_RS05120;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=RAF_RS05120;old_locus_tag=RAF_ORF0909
NC_012633.1	Protein Homology	CDS	941457	942278	.	-	0	ID=cds-WP_004997791.1;Parent=gene-RAF_RS05120;Dbxref=GenBank:WP_004997791.1;Name=WP_004997791.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0016740,GO:0015934;gbkey=CDS;gene=rplB;go_component=large ribosomal subunit|0015934||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA,transferase activity|0016740||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442486.1;locus_tag=RAF_RS05120;product=50S ribosomal protein L2;protein_id=WP_004997791.1;transl_table=11
NC_012633.1	RefSeq	gene	942279	942575	.	-	.	ID=gene-RAF_RS05125;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=RAF_RS05125;old_locus_tag=RAF_ORF0910
NC_012633.1	Protein Homology	CDS	942279	942575	.	-	0	ID=cds-WP_010977586.1;Parent=gene-RAF_RS05125;Dbxref=GenBank:WP_010977586.1;Name=WP_010977586.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplW;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596201.1;locus_tag=RAF_RS05125;product=50S ribosomal protein L23;protein_id=WP_010977586.1;transl_table=11
NC_012633.1	RefSeq	gene	942572	943195	.	-	.	ID=gene-RAF_RS05130;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=RAF_RS05130;old_locus_tag=RAF_ORF0911
NC_012633.1	Protein Homology	CDS	942572	943195	.	-	0	ID=cds-WP_012719919.1;Parent=gene-RAF_RS05130;Dbxref=GenBank:WP_012719919.1;Name=WP_012719919.1;Ontology_term=GO:0006412,GO:0003735,GO:0022625;gbkey=CDS;gene=rplD;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477720.1;locus_tag=RAF_RS05130;product=50S ribosomal protein L4;protein_id=WP_012719919.1;transl_table=11
NC_012633.1	RefSeq	gene	943306	943953	.	-	.	ID=gene-RAF_RS05135;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;locus_tag=RAF_RS05135;old_locus_tag=RAF_ORF0912
NC_012633.1	Protein Homology	CDS	943306	943953	.	-	0	ID=cds-WP_012719920.1;Parent=gene-RAF_RS05135;Dbxref=GenBank:WP_012719920.1;Name=WP_012719920.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977587.1;locus_tag=RAF_RS05135;product=50S ribosomal protein L3;protein_id=WP_012719920.1;transl_table=11
NC_012633.1	RefSeq	gene	943954	944271	.	-	.	ID=gene-RAF_RS05140;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;locus_tag=RAF_RS05140;old_locus_tag=RAF_ORF0913
NC_012633.1	Protein Homology	CDS	943954	944271	.	-	0	ID=cds-WP_004997781.1;Parent=gene-RAF_RS05140;Dbxref=GenBank:WP_004997781.1;Name=WP_004997781.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsJ;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736947.1;locus_tag=RAF_RS05140;product=30S ribosomal protein S10;protein_id=WP_004997781.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	944290	944468	.	-	.	ID=gene-RAF_RS08140;Name=RAF_RS08140;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS08140;partial=true;pseudo=true;start_range=.,944290
NC_012633.1	Protein Homology	CDS	944290	944468	.	-	0	ID=cds-RAF_RS08140;Parent=gene-RAF_RS08140;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409890.1;locus_tag=RAF_RS08140;partial=true;product=palindromic element RPE1 domain-containing protein;pseudo=true;start_range=.,944290;transl_table=11
NC_012633.1	RefSeq	gene	944513	945697	.	-	.	ID=gene-RAF_RS05145;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=RAF_RS05145;old_locus_tag=RAF_ORF0914
NC_012633.1	Protein Homology	CDS	944513	945697	.	-	0	ID=cds-WP_004997779.1;Parent=gene-RAF_RS05145;Dbxref=GenBank:WP_004997779.1;Name=WP_004997779.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191093.1;locus_tag=RAF_RS05145;product=elongation factor Tu;protein_id=WP_004997779.1;transl_table=11
NC_012633.1	RefSeq	gene	945789	945862	.	-	.	ID=gene-RAF_RS05150;Name=RAF_RS05150;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS05150;old_locus_tag=RAF_RNA28
NC_012633.1	tRNAscan-SE	tRNA	945789	945862	.	-	.	ID=rna-RAF_RS05150;Parent=gene-RAF_RS05150;anticodon=(pos:complement(945828..945830));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS05150;product=tRNA-Gly
NC_012633.1	tRNAscan-SE	exon	945789	945862	.	-	.	ID=exon-RAF_RS05150-1;Parent=rna-RAF_RS05150;anticodon=(pos:complement(945828..945830));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS05150;product=tRNA-Gly
NC_012633.1	RefSeq	gene	945998	946083	.	-	.	ID=gene-RAF_RS05155;Name=RAF_RS05155;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS05155;old_locus_tag=RAF_RNA29
NC_012633.1	tRNAscan-SE	tRNA	945998	946083	.	-	.	ID=rna-RAF_RS05155;Parent=gene-RAF_RS05155;anticodon=(pos:complement(946047..946049));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS05155;product=tRNA-Tyr
NC_012633.1	tRNAscan-SE	exon	945998	946083	.	-	.	ID=exon-RAF_RS05155-1;Parent=rna-RAF_RS05155;anticodon=(pos:complement(946047..946049));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS05155;product=tRNA-Tyr
NC_012633.1	RefSeq	gene	946274	946996	.	+	.	ID=gene-RAF_RS05160;Name=rlmB;gbkey=Gene;gene=rlmB;gene_biotype=protein_coding;locus_tag=RAF_RS05160;old_locus_tag=RAF_ORF0915
NC_012633.1	Protein Homology	CDS	946274	946996	.	+	0	ID=cds-WP_012719921.1;Parent=gene-RAF_RS05160;Dbxref=GenBank:WP_012719921.1;Name=WP_012719921.1;Ontology_term=GO:0006396,GO:0008173;gbkey=CDS;gene=rlmB;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442490.1;locus_tag=RAF_RS05160;product=23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;protein_id=WP_012719921.1;transl_table=11
NC_012633.1	RefSeq	gene	947096	947548	.	+	.	ID=gene-RAF_RS05165;Name=RAF_RS05165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05165;old_locus_tag=RAF_ORF0916
NC_012633.1	Protein Homology	CDS	947096	947548	.	+	0	ID=cds-WP_012719922.1;Parent=gene-RAF_RS05165;Dbxref=GenBank:WP_012719922.1;Name=WP_012719922.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409481.1;locus_tag=RAF_RS05165;product=hypothetical protein;protein_id=WP_012719922.1;transl_table=11
NC_012633.1	RefSeq	gene	947545	948936	.	+	.	ID=gene-RAF_RS05170;Name=fumC;gbkey=Gene;gene=fumC;gene_biotype=protein_coding;locus_tag=RAF_RS05170;old_locus_tag=RAF_ORF0917
NC_012633.1	Protein Homology	CDS	947545	948936	.	+	0	ID=cds-WP_010977593.1;Parent=gene-RAF_RS05170;Dbxref=GenBank:WP_010977593.1;Name=WP_010977593.1;Ontology_term=GO:0006106,GO:0004333,GO:0045239;gbkey=CDS;gene=fumC;go_component=tricarboxylic acid cycle heteromeric enzyme complex|0045239||IEA;go_function=fumarate hydratase activity|0004333||IEA;go_process=fumarate metabolic process|0006106||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151157.1;locus_tag=RAF_RS05170;product=class II fumarate hydratase;protein_id=WP_010977593.1;transl_table=11
NC_012633.1	RefSeq	gene	949033	949281	.	+	.	ID=gene-RAF_RS05175;Name=RAF_RS05175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05175;old_locus_tag=RAF_ORF0918
NC_012633.1	Protein Homology	CDS	949033	949281	.	+	0	ID=cds-WP_012719923.1;Parent=gene-RAF_RS05175;Dbxref=GenBank:WP_012719923.1;Name=WP_012719923.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442493.1;locus_tag=RAF_RS05175;product=type II toxin-antitoxin system Phd/YefM family antitoxin;protein_id=WP_012719923.1;transl_table=11
NC_012633.1	RefSeq	gene	949275	949598	.	+	.	ID=gene-RAF_RS05180;Name=RAF_RS05180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05180;old_locus_tag=RAF_ORF0919
NC_012633.1	Protein Homology	CDS	949275	949598	.	+	0	ID=cds-WP_012719924.1;Parent=gene-RAF_RS05180;Dbxref=GenBank:WP_012719924.1;Name=WP_012719924.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997775.1;locus_tag=RAF_RS05180;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_012719924.1;transl_table=11
NC_012633.1	RefSeq	gene	949604	949756	.	+	.	ID=gene-RAF_RS10030;Name=RAF_RS10030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10030
NC_012633.1	GeneMarkS-2+	CDS	949604	949756	.	+	0	ID=cds-WP_234943878.1;Parent=gene-RAF_RS10030;Dbxref=GenBank:WP_234943878.1;Name=WP_234943878.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10030;product=hypothetical protein;protein_id=WP_234943878.1;transl_table=11
NC_012633.1	RefSeq	gene	949779	951137	.	+	.	ID=gene-RAF_RS05185;Name=ftsZ;gbkey=Gene;gene=ftsZ;gene_biotype=protein_coding;locus_tag=RAF_RS05185;old_locus_tag=RAF_ORF0920
NC_012633.1	Protein Homology	CDS	949779	951137	.	+	0	ID=cds-WP_010977596.1;Parent=gene-RAF_RS05185;Dbxref=GenBank:WP_010977596.1;Name=WP_010977596.1;Ontology_term=GO:0000910,GO:0003924,GO:0005525;gbkey=CDS;gene=ftsZ;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926465.1;locus_tag=RAF_RS05185;product=cell division protein FtsZ;protein_id=WP_010977596.1;transl_table=11
NC_012633.1	RefSeq	gene	951498	952061	.	+	.	ID=gene-RAF_RS10035;Name=RAF_RS10035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10035;old_locus_tag=RAF_ORF0921
NC_012633.1	Protein Homology	CDS	951498	952061	.	+	0	ID=cds-WP_410524343.1;Parent=gene-RAF_RS10035;Dbxref=GenBank:WP_410524343.1;Name=WP_410524343.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770407.1;locus_tag=RAF_RS10035;product=hypothetical protein;protein_id=WP_410524343.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	952155	952640	.	+	.	ID=gene-RAF_RS08850;Name=eco;gbkey=Gene;gene=eco;gene_biotype=pseudogene;locus_tag=RAF_RS08850;pseudo=true
NC_012633.1	Protein Homology	CDS	952155	952640	.	+	0	ID=cds-RAF_RS08850;Parent=gene-RAF_RS08850;Note=internal stop;Ontology_term=GO:0004867;gbkey=CDS;gene=eco;go_function=serine-type endopeptidase inhibitor activity|0004867||IEA;inference=COORDINATES: protein motif:HMM:NF015907.5;locus_tag=RAF_RS08850;product=serine protease inhibitor ecotin;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	952669	953241	.	-	.	ID=gene-RAF_RS05200;Name=RAF_RS05200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05200;old_locus_tag=RAF_ORF0923
NC_012633.1	Protein Homology	CDS	952669	953241	.	-	0	ID=cds-WP_004997765.1;Parent=gene-RAF_RS05200;Dbxref=GenBank:WP_004997765.1;Name=WP_004997765.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997765.1;locus_tag=RAF_RS05200;product=NifU family protein;protein_id=WP_004997765.1;transl_table=11
NC_012633.1	RefSeq	gene	953589	954815	.	-	.	ID=gene-RAF_RS05205;Name=RAF_RS05205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05205;old_locus_tag=RAF_ORF0924
NC_012633.1	Protein Homology	CDS	953589	954815	.	-	0	ID=cds-WP_083762116.1;Parent=gene-RAF_RS05205;Dbxref=GenBank:WP_083762116.1;Name=WP_083762116.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012153059.1;locus_tag=RAF_RS05205;product=MFS transporter;protein_id=WP_083762116.1;transl_table=11
NC_012633.1	RefSeq	gene	955009	956241	.	-	.	ID=gene-RAF_RS05210;Name=RAF_RS05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05210;old_locus_tag=RAF_ORF0925
NC_012633.1	Protein Homology	CDS	955009	956241	.	-	0	ID=cds-WP_012719928.1;Parent=gene-RAF_RS05210;Dbxref=GenBank:WP_012719928.1;Name=WP_012719928.1;Ontology_term=GO:0003676,GO:0005524,GO:0016887;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945870.1;locus_tag=RAF_RS05210;product=DEAD/DEAH box helicase;protein_id=WP_012719928.1;transl_table=11
NC_012633.1	RefSeq	gene	956755	956967	.	-	.	ID=gene-RAF_RS05215;Name=RAF_RS05215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05215;old_locus_tag=RAF_ORF0926
NC_012633.1	Protein Homology	CDS	956755	956967	.	-	0	ID=cds-WP_004997759.1;Parent=gene-RAF_RS05215;Dbxref=GenBank:WP_004997759.1;Name=WP_004997759.1;Ontology_term=GO:0003676;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596176.1;locus_tag=RAF_RS05215;product=cold-shock protein;protein_id=WP_004997759.1;transl_table=11
NC_012633.1	RefSeq	gene	957358	957443	.	+	.	ID=gene-RAF_RS05220;Name=RAF_RS05220;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS05220;old_locus_tag=RAF_RNA30
NC_012633.1	tRNAscan-SE	tRNA	957358	957443	.	+	.	ID=rna-RAF_RS05220;Parent=gene-RAF_RS05220;anticodon=(pos:957391..957393);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS05220;product=tRNA-Leu
NC_012633.1	tRNAscan-SE	exon	957358	957443	.	+	.	ID=exon-RAF_RS05220-1;Parent=rna-RAF_RS05220;anticodon=(pos:957391..957393);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS05220;product=tRNA-Leu
NC_012633.1	RefSeq	gene	957913	958062	.	-	.	ID=gene-RAF_RS08855;Name=RAF_RS08855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08855
NC_012633.1	Protein Homology	CDS	957913	958062	.	-	0	ID=cds-WP_146610389.1;Parent=gene-RAF_RS08855;Dbxref=GenBank:WP_146610389.1;Name=WP_146610389.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024806.5;locus_tag=RAF_RS08855;product=tetratricopeptide repeat protein;protein_id=WP_146610389.1;transl_table=11
NC_012633.1	RefSeq	gene	958368	959273	.	-	.	ID=gene-RAF_RS05225;Name=rsmA;gbkey=Gene;gene=rsmA;gene_biotype=protein_coding;locus_tag=RAF_RS05225;old_locus_tag=RAF_ORF0928
NC_012633.1	Protein Homology	CDS	958368	959273	.	-	0	ID=cds-WP_012719930.1;Parent=gene-RAF_RS05225;Dbxref=GenBank:WP_012719930.1;Name=WP_012719930.1;Ontology_term=GO:0006364,GO:0000179;gbkey=CDS;gene=rsmA;go_function=rRNA (adenine-N6%2CN6-)-dimethyltransferase activity|0000179||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830902.1;locus_tag=RAF_RS05225;product=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA;protein_id=WP_012719930.1;transl_table=11
NC_012633.1	RefSeq	gene	959427	960314	.	-	.	ID=gene-RAF_RS05230;Name=RAF_RS05230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05230;old_locus_tag=RAF_ORF0929
NC_012633.1	Protein Homology	CDS	959427	960314	.	-	0	ID=cds-WP_012719931.1;Parent=gene-RAF_RS05230;Dbxref=GenBank:WP_012719931.1;Name=WP_012719931.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191104.1;locus_tag=RAF_RS05230;product=SurA N-terminal domain-containing protein;protein_id=WP_012719931.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	960470	962613	.	-	.	ID=gene-RAF_RS05235;Name=RAF_RS05235;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05235;old_locus_tag=RAF_ORF0930;pseudo=true
NC_012633.1	Protein Homology	CDS	960470	962613	.	-	0	ID=cds-RAF_RS05235;Parent=gene-RAF_RS05235;Note=frameshifted;Ontology_term=GO:0015920;gbkey=CDS;go_process=lipopolysaccharide transport|0015920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273703.1;locus_tag=RAF_RS05235;product=LPS-assembly protein LptD;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	962579	962788	.	+	.	ID=gene-RAF_RS05240;Name=RAF_RS05240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05240
NC_012633.1	Protein Homology	CDS	962579	962788	.	+	0	ID=cds-WP_014273704.1;Parent=gene-RAF_RS05240;Dbxref=GenBank:WP_014273704.1;Name=WP_014273704.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409496.1;locus_tag=RAF_RS05240;product=hypothetical protein;protein_id=WP_014273704.1;transl_table=11
NC_012633.1	RefSeq	gene	962877	964211	.	+	.	ID=gene-RAF_RS05245;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=RAF_RS05245;old_locus_tag=RAF_ORF0932
NC_012633.1	Protein Homology	CDS	962877	964211	.	+	0	ID=cds-WP_012719934.1;Parent=gene-RAF_RS05245;Dbxref=GenBank:WP_012719934.1;Name=WP_012719934.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;gene=xseA;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041471739.1;locus_tag=RAF_RS05245;product=exodeoxyribonuclease VII large subunit;protein_id=WP_012719934.1;transl_table=11
NC_012633.1	RefSeq	gene	964217	964534	.	+	.	ID=gene-RAF_RS05250;Name=RAF_RS05250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05250;old_locus_tag=RAF_ORF0933
NC_012633.1	Protein Homology	CDS	964217	964534	.	+	0	ID=cds-WP_012719935.1;Parent=gene-RAF_RS05250;Dbxref=GenBank:WP_012719935.1;Name=WP_012719935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719935.1;locus_tag=RAF_RS05250;product=hypothetical protein;protein_id=WP_012719935.1;transl_table=11
NC_012633.1	RefSeq	gene	964888	965670	.	+	.	ID=gene-RAF_RS05260;Name=xth;gbkey=Gene;gene=xth;gene_biotype=protein_coding;locus_tag=RAF_RS05260;old_locus_tag=RAF_ORF0934
NC_012633.1	Protein Homology	CDS	964888	965670	.	+	0	ID=cds-WP_012719936.1;Parent=gene-RAF_RS05260;Dbxref=GenBank:WP_012719936.1;Name=WP_012719936.1;Ontology_term=GO:0006281,GO:0008311;gbkey=CDS;gene=xth;go_function=double-stranded DNA 3'-5' DNA exonuclease activity|0008311||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917417.1;locus_tag=RAF_RS05260;product=exodeoxyribonuclease III;protein_id=WP_012719936.1;transl_table=11
NC_012633.1	RefSeq	gene	965866	966132	.	+	.	ID=gene-RAF_RS08165;Name=RAF_RS08165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08165;old_locus_tag=RAF_ORF0935
NC_012633.1	Protein Homology	CDS	965866	966132	.	+	0	ID=cds-WP_010977607.1;Parent=gene-RAF_RS08165;Dbxref=GenBank:WP_010977607.1;Name=WP_010977607.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442511.1;locus_tag=RAF_RS08165;product=SemiSWEET family sugar transporter;protein_id=WP_010977607.1;transl_table=11
NC_012633.1	RefSeq	gene	966136	967479	.	+	.	ID=gene-RAF_RS05270;Name=der;gbkey=Gene;gene=der;gene_biotype=protein_coding;locus_tag=RAF_RS05270;old_locus_tag=RAF_ORF0936
NC_012633.1	Protein Homology	CDS	966136	967479	.	+	0	ID=cds-WP_012719937.1;Parent=gene-RAF_RS05270;Dbxref=GenBank:WP_012719937.1;Name=WP_012719937.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=der;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012149930.1;locus_tag=RAF_RS05270;product=ribosome biogenesis GTPase Der;protein_id=WP_012719937.1;transl_table=11
NC_012633.1	RefSeq	gene	967630	968772	.	-	.	ID=gene-RAF_RS05275;Name=RAF_RS05275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05275;old_locus_tag=RAF_ORF0937
NC_012633.1	Protein Homology	CDS	967630	968772	.	-	0	ID=cds-WP_012719938.1;Parent=gene-RAF_RS05275;Dbxref=GenBank:WP_012719938.1;Name=WP_012719938.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977609.1;locus_tag=RAF_RS05275;product=ATP-binding protein;protein_id=WP_012719938.1;transl_table=11
NC_012633.1	RefSeq	gene	969070	969201	.	-	.	ID=gene-RAF_RS10420;Name=RAF_RS10420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10420
NC_012633.1	GeneMarkS-2+	CDS	969070	969201	.	-	0	ID=cds-WP_268738926.1;Parent=gene-RAF_RS10420;Dbxref=GenBank:WP_268738926.1;Name=WP_268738926.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10420;product=hypothetical protein;protein_id=WP_268738926.1;transl_table=11
NC_012633.1	RefSeq	gene	969703	970002	.	-	.	ID=gene-RAF_RS05280;Name=RAF_RS05280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05280
NC_012633.1	Protein Homology	CDS	969703	970002	.	-	0	ID=cds-WP_041471924.1;Parent=gene-RAF_RS05280;Dbxref=GenBank:WP_041471924.1;Name=WP_041471924.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977610.1;locus_tag=RAF_RS05280;product=hypothetical protein;protein_id=WP_041471924.1;transl_table=11
NC_012633.1	RefSeq	gene	970420	970704	.	-	.	ID=gene-RAF_RS10040;Name=RAF_RS10040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10040
NC_012633.1	GeneMarkS-2+	CDS	970420	970704	.	-	0	ID=cds-WP_234943879.1;Parent=gene-RAF_RS10040;Dbxref=GenBank:WP_234943879.1;Name=WP_234943879.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10040;product=hypothetical protein;protein_id=WP_234943879.1;transl_table=11
NC_012633.1	RefSeq	gene	970799	971017	.	-	.	ID=gene-RAF_RS05290;Name=RAF_RS05290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05290
NC_012633.1	Protein Homology	CDS	970799	971017	.	-	0	ID=cds-WP_041471925.1;Parent=gene-RAF_RS05290;Dbxref=GenBank:WP_041471925.1;Name=WP_041471925.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728310.1;locus_tag=RAF_RS05290;product=hypothetical protein;protein_id=WP_041471925.1;transl_table=11
NC_012633.1	RefSeq	gene	971203	971424	.	-	.	ID=gene-RAF_RS05295;Name=RAF_RS05295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05295
NC_012633.1	Protein Homology	CDS	971203	971424	.	-	0	ID=cds-WP_014410965.1;Parent=gene-RAF_RS05295;Dbxref=GenBank:WP_014410965.1;Name=WP_014410965.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997744.1;locus_tag=RAF_RS05295;product=hypothetical protein;protein_id=WP_014410965.1;transl_table=11
NC_012633.1	RefSeq	gene	971421	972857	.	-	.	ID=gene-RAF_RS05300;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;locus_tag=RAF_RS05300;old_locus_tag=RAF_ORF0940
NC_012633.1	Protein Homology	CDS	971421	972857	.	-	0	ID=cds-WP_012719939.1;Parent=gene-RAF_RS05300;Dbxref=GenBank:WP_012719939.1;Name=WP_012719939.1;Ontology_term=GO:0006744,GO:0016709;gbkey=CDS;gene=ubiB;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442518.1;locus_tag=RAF_RS05300;product=2-polyprenylphenol 6-hydroxylase;protein_id=WP_012719939.1;transl_table=11
NC_012633.1	RefSeq	gene	973005	973751	.	-	.	ID=gene-RAF_RS05305;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=RAF_RS05305;old_locus_tag=RAF_ORF0941
NC_012633.1	Protein Homology	CDS	973005	973751	.	-	0	ID=cds-WP_004997739.1;Parent=gene-RAF_RS05305;Dbxref=GenBank:WP_004997739.1;Name=WP_004997739.1;Ontology_term=GO:0008168;gbkey=CDS;gene=ubiE;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997739.1;locus_tag=RAF_RS05305;product=bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1%2C4-benzoquinol methylase UbiE;protein_id=WP_004997739.1;transl_table=11
NC_012633.1	RefSeq	gene	973780	974601	.	+	.	ID=gene-RAF_RS05310;Name=mutM;gbkey=Gene;gene=mutM;gene_biotype=protein_coding;locus_tag=RAF_RS05310;old_locus_tag=RAF_ORF0942
NC_012633.1	Protein Homology	CDS	973780	974601	.	+	0	ID=cds-WP_012719940.1;Parent=gene-RAF_RS05310;Dbxref=GenBank:WP_012719940.1;Name=WP_012719940.1;Ontology_term=GO:0006281,GO:0006284,GO:0003676,GO:0003684,GO:0003906,GO:0008270,GO:0008534,GO:0016799,GO:0019104;gbkey=CDS;gene=mutM;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA,zinc ion binding|0008270||IEA,oxidized purine nucleobase lesion DNA N-glycosylase activity|0008534||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA,DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA,base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442519.1;locus_tag=RAF_RS05310;product=bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase;protein_id=WP_012719940.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	974676	975368	.	+	.	ID=gene-RAF_RS10640;Name=RAF_RS10640;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10640;pseudo=true
NC_012633.1	Protein Homology	CDS	974676	975368	.	+	0	ID=cds-RAF_RS10640;Parent=gene-RAF_RS10640;Note=internal stop;Ontology_term=GO:0009058,GO:0016779;gbkey=CDS;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997735.1;locus_tag=RAF_RS10640;product=sugar phosphate nucleotidyltransferase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	975341	975793	.	+	.	ID=gene-RAF_RS10430;Name=RAF_RS10430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10430
NC_012633.1	GeneMarkS-2+	CDS	975341	975793	.	+	0	ID=cds-WP_268738927.1;Parent=gene-RAF_RS10430;Dbxref=GenBank:WP_268738927.1;Name=WP_268738927.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10430;product=sugar phosphate nucleotidyltransferase;protein_id=WP_268738927.1;transl_table=11
NC_012633.1	RefSeq	gene	975927	976160	.	+	.	ID=gene-RAF_RS09495;Name=RAF_RS09495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09495;old_locus_tag=RAF_ORF0946
NC_012633.1	Protein Homology	CDS	975927	976160	.	+	0	ID=cds-WP_041472037.1;Parent=gene-RAF_RS09495;Dbxref=GenBank:WP_041472037.1;Name=WP_041472037.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364940.1;locus_tag=RAF_RS09495;product=hypothetical protein;protein_id=WP_041472037.1;transl_table=11
NC_012633.1	RefSeq	gene	976554	976802	.	+	.	ID=gene-RAF_RS05330;Name=RAF_RS05330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05330;old_locus_tag=RAF_ORF0947
NC_012633.1	Protein Homology	CDS	976554	976802	.	+	0	ID=cds-WP_041471926.1;Parent=gene-RAF_RS05330;Dbxref=GenBank:WP_041471926.1;Name=WP_041471926.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409511.1;locus_tag=RAF_RS05330;product=hypothetical protein;protein_id=WP_041471926.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	977102	978211	.	-	.	ID=gene-RAF_RS05335;Name=phaZ;gbkey=Gene;gene=phaZ;gene_biotype=pseudogene;locus_tag=RAF_RS05335;old_locus_tag=RAF_ORF0948;pseudo=true
NC_012633.1	Protein Homology	CDS	977102	978211	.	-	0	ID=cds-RAF_RS05335;Parent=gene-RAF_RS05335;Note=frameshifted%3B internal stop;gbkey=CDS;gene=phaZ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599520.1;locus_tag=RAF_RS05335;product=polyhydroxyalkanoate depolymerase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	979418	980338	.	-	.	ID=gene-RAF_RS05340;Name=RAF_RS05340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05340;old_locus_tag=RAF_ORF0950
NC_012633.1	Protein Homology	CDS	979418	980338	.	-	0	ID=cds-WP_012719943.1;Parent=gene-RAF_RS05340;Dbxref=GenBank:WP_012719943.1;Name=WP_012719943.1;Ontology_term=GO:0004536,GO:0016788,GO:0046872;gbkey=CDS;go_function=DNA nuclease activity|0004536||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442524.1;locus_tag=RAF_RS05340;product=TatD family hydrolase;protein_id=WP_012719943.1;transl_table=11
NC_012633.1	RefSeq	gene	980391	981917	.	-	.	ID=gene-RAF_RS05345;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=RAF_RS05345;old_locus_tag=RAF_ORF0951
NC_012633.1	Protein Homology	CDS	980391	981917	.	-	0	ID=cds-WP_012719944.1;Parent=gene-RAF_RS05345;Dbxref=GenBank:WP_012719944.1;Name=WP_012719944.1;Ontology_term=GO:0006431,GO:0000049,GO:0004825,GO:0005524;gbkey=CDS;gene=metG;go_function=tRNA binding|0000049||IEA,methionine-tRNA ligase activity|0004825||IEA,ATP binding|0005524||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442525.1;locus_tag=RAF_RS05345;product=methionine--tRNA ligase;protein_id=WP_012719944.1;transl_table=11
NC_012633.1	RefSeq	gene	981914	982525	.	-	.	ID=gene-RAF_RS05350;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;locus_tag=RAF_RS05350;old_locus_tag=RAF_ORF0952
NC_012633.1	Protein Homology	CDS	981914	982525	.	-	0	ID=cds-WP_012719945.1;Parent=gene-RAF_RS05350;Dbxref=GenBank:WP_012719945.1;Name=WP_012719945.1;Ontology_term=GO:0006233,GO:0004798,GO:0005524;gbkey=CDS;gene=tmk;go_function=thymidylate kinase activity|0004798||IEA,ATP binding|0005524||IEA;go_process=dTDP biosynthetic process|0006233||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191116.1;locus_tag=RAF_RS05350;product=dTMP kinase;protein_id=WP_012719945.1;transl_table=11
NC_012633.1	RefSeq	gene	982784	984172	.	+	.	ID=gene-RAF_RS05355;Name=RAF_RS05355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05355;old_locus_tag=RAF_ORF0953
NC_012633.1	Protein Homology	CDS	982784	984172	.	+	0	ID=cds-WP_012719946.1;Parent=gene-RAF_RS05355;Dbxref=GenBank:WP_012719946.1;Name=WP_012719946.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719946.1;locus_tag=RAF_RS05355;product=MFS transporter;protein_id=WP_012719946.1;transl_table=11
NC_012633.1	RefSeq	gene	984197	985045	.	-	.	ID=gene-RAF_RS05360;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=RAF_RS05360;old_locus_tag=RAF_ORF0954
NC_012633.1	Protein Homology	CDS	984197	985045	.	-	0	ID=cds-WP_012719947.1;Parent=gene-RAF_RS05360;Dbxref=GenBank:WP_012719947.1;Name=WP_012719947.1;Ontology_term=GO:0006744,GO:0008412;gbkey=CDS;gene=ubiA;go_function=4-hydroxybenzoate polyprenyltransferase activity|0008412||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719947.1;locus_tag=RAF_RS05360;product=4-hydroxybenzoate octaprenyltransferase;protein_id=WP_012719947.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	985129	986135	.	+	.	ID=gene-RAF_RS05365;Name=RAF_RS05365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05365;old_locus_tag=RAF_ORF0955;pseudo=true
NC_012633.1	Protein Homology	CDS	985129	986135	.	+	0	ID=cds-RAF_RS05365;Parent=gene-RAF_RS05365;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014121021.1;locus_tag=RAF_RS05365;product=Rpn family recombination-promoting nuclease/putative transposase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	986173	988611	.	+	.	ID=gene-RAF_RS05370;Name=RAF_RS05370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05370;old_locus_tag=RAF_ORF0957
NC_012633.1	Protein Homology	CDS	986173	988611	.	+	0	ID=cds-WP_012719948.1;Parent=gene-RAF_RS05370;Dbxref=GenBank:WP_012719948.1;Name=WP_012719948.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945886.1;locus_tag=RAF_RS05370;product=valine--tRNA ligase;protein_id=WP_012719948.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	988580	989334	.	+	.	ID=gene-RAF_RS05375;Name=RAF_RS05375;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05375;old_locus_tag=RAF_ORF0958;pseudo=true
NC_012633.1	Protein Homology	CDS	988580	989334	.	+	0	ID=cds-RAF_RS05375;Parent=gene-RAF_RS05375;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926496.1;locus_tag=RAF_RS05375;product=LicD family protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	989424	990224	.	+	.	ID=gene-RAF_RS05380;Name=RAF_RS05380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05380;old_locus_tag=RAF_ORF0959
NC_012633.1	Protein Homology	CDS	989424	990224	.	+	0	ID=cds-WP_004997690.1;Parent=gene-RAF_RS05380;Dbxref=GenBank:WP_004997690.1;Name=WP_004997690.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997690.1;locus_tag=RAF_RS05380;product=LicD family protein;protein_id=WP_004997690.1;transl_table=11
NC_012633.1	RefSeq	gene	990317	990496	.	-	.	ID=gene-RAF_RS10055;Name=RAF_RS10055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10055
NC_012633.1	Protein Homology	CDS	990317	990496	.	-	0	ID=cds-WP_041471927.1;Parent=gene-RAF_RS10055;Dbxref=GenBank:WP_041471927.1;Name=WP_041471927.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926498.1;locus_tag=RAF_RS10055;product=hypothetical protein;protein_id=WP_041471927.1;transl_table=11
NC_012633.1	RefSeq	gene	990674	990838	.	-	.	ID=gene-RAF_RS10790;Name=RAF_RS10790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10790
NC_012633.1	Protein Homology	CDS	990674	990838	.	-	0	ID=cds-WP_410524344.1;Parent=gene-RAF_RS10790;Dbxref=GenBank:WP_410524344.1;Name=WP_410524344.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025019.5;locus_tag=RAF_RS10790;product=DUF4143 domain-containing protein;protein_id=WP_410524344.1;transl_table=11
NC_012633.1	RefSeq	gene	990851	991072	.	-	.	ID=gene-RAF_RS10060;Name=RAF_RS10060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10060
NC_012633.1	GeneMarkS-2+	CDS	990851	991072	.	-	0	ID=cds-WP_234943881.1;Parent=gene-RAF_RS10060;Dbxref=GenBank:WP_234943881.1;Name=WP_234943881.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10060;product=hypothetical protein;protein_id=WP_234943881.1;transl_table=11
NC_012633.1	RefSeq	gene	991032	991523	.	-	.	ID=gene-RAF_RS10065;Name=RAF_RS10065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10065
NC_012633.1	Protein Homology	CDS	991032	991523	.	-	0	ID=cds-WP_234943882.1;Parent=gene-RAF_RS10065;Dbxref=GenBank:WP_234943882.1;Name=WP_234943882.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151196.1;locus_tag=RAF_RS10065;product=ATP-binding protein;protein_id=WP_234943882.1;transl_table=11
NC_012633.1	RefSeq	gene	991973	993259	.	+	.	ID=gene-RAF_RS05395;Name=RAF_RS05395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05395;old_locus_tag=RAF_ORF0962
NC_012633.1	Protein Homology	CDS	991973	993259	.	+	0	ID=cds-WP_012719950.1;Parent=gene-RAF_RS05395;Dbxref=GenBank:WP_012719950.1;Name=WP_012719950.1;Ontology_term=GO:0006310;gbkey=CDS;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926499.1;locus_tag=RAF_RS05395;product=DNA recombination protein RmuC;protein_id=WP_012719950.1;transl_table=11
NC_012633.1	RefSeq	gene	993404	993694	.	+	.	ID=gene-RAF_RS09045;Name=RAF_RS09045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09045
NC_012633.1	Protein Homology	CDS	993404	993694	.	+	0	ID=cds-WP_041472039.1;Parent=gene-RAF_RS09045;Dbxref=GenBank:WP_041472039.1;Name=WP_041472039.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014363219.1;locus_tag=RAF_RS09045;product=hypothetical protein;protein_id=WP_041472039.1;transl_table=11
NC_012633.1	RefSeq	gene	993678	994229	.	+	.	ID=gene-RAF_RS05405;Name=RAF_RS05405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05405;old_locus_tag=RAF_ORF0963
NC_012633.1	Protein Homology	CDS	993678	994229	.	+	0	ID=cds-WP_041471928.1;Parent=gene-RAF_RS05405;Dbxref=GenBank:WP_041471928.1;Name=WP_041471928.1;Ontology_term=GO:0006486,GO:0008417,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=fucosyltransferase activity|0008417||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: protein motif:HMM:NF013048.5;locus_tag=RAF_RS05405;product=glycosyltransferase family 10 domain-containing protein;protein_id=WP_041471928.1;transl_table=11
NC_012633.1	RefSeq	gene	994472	994858	.	+	.	ID=gene-RAF_RS10070;Name=RAF_RS10070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10070;old_locus_tag=RAF_ORF0965
NC_012633.1	Protein Homology	CDS	994472	994858	.	+	0	ID=cds-WP_234943946.1;Parent=gene-RAF_RS10070;Dbxref=GenBank:WP_234943946.1;Name=WP_234943946.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917391.1;locus_tag=RAF_RS10070;product=glycosyltransferase family 25 protein;protein_id=WP_234943946.1;transl_table=11
NC_012633.1	RefSeq	gene	995017	995358	.	-	.	ID=gene-RAF_RS05415;Name=RAF_RS05415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05415
NC_012633.1	Protein Homology	CDS	995017	995358	.	-	0	ID=cds-WP_234943884.1;Parent=gene-RAF_RS05415;Dbxref=GenBank:WP_234943884.1;Name=WP_234943884.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977639.1;locus_tag=RAF_RS05415;product=hypothetical protein;protein_id=WP_234943884.1;transl_table=11
NC_012633.1	RefSeq	gene	995421	995798	.	-	.	ID=gene-RAF_RS05420;Name=RAF_RS05420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05420
NC_012633.1	Protein Homology	CDS	995421	995798	.	-	0	ID=cds-WP_234943885.1;Parent=gene-RAF_RS05420;Dbxref=GenBank:WP_234943885.1;Name=WP_234943885.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997680.1;locus_tag=RAF_RS05420;product=hypothetical protein;protein_id=WP_234943885.1;transl_table=11
NC_012633.1	RefSeq	gene	995812	996060	.	-	.	ID=gene-RAF_RS09125;Name=RAF_RS09125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09125
NC_012633.1	Protein Homology	CDS	995812	996060	.	-	0	ID=cds-WP_041471931.1;Parent=gene-RAF_RS09125;Dbxref=GenBank:WP_041471931.1;Name=WP_041471931.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917388.1;locus_tag=RAF_RS09125;product=hypothetical protein;protein_id=WP_041471931.1;transl_table=11
NC_012633.1	RefSeq	gene	996057	996629	.	-	.	ID=gene-RAF_RS05430;Name=RAF_RS05430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05430
NC_012633.1	Protein Homology	CDS	996057	996629	.	-	0	ID=cds-WP_041471932.1;Parent=gene-RAF_RS05430;Dbxref=GenBank:WP_041471932.1;Name=WP_041471932.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945890.1;locus_tag=RAF_RS05430;product=hypothetical protein;protein_id=WP_041471932.1;transl_table=11
NC_012633.1	RefSeq	gene	996685	996972	.	-	.	ID=gene-RAF_RS05435;Name=RAF_RS05435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05435
NC_012633.1	Protein Homology	CDS	996685	996972	.	-	0	ID=cds-WP_049752713.1;Parent=gene-RAF_RS05435;Dbxref=GenBank:WP_049752713.1;Name=WP_049752713.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728319.1;locus_tag=RAF_RS05435;product=hypothetical protein;protein_id=WP_049752713.1;transl_table=11
NC_012633.1	RefSeq	gene	997247	997384	.	+	.	ID=gene-RAF_RS10075;Name=RAF_RS10075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10075
NC_012633.1	Protein Homology	CDS	997247	997384	.	+	0	ID=cds-WP_014273722.1;Parent=gene-RAF_RS10075;Dbxref=GenBank:WP_014273722.1;Name=WP_014273722.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: protein motif:HMM:NF019605.5;locus_tag=RAF_RS10075;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_014273722.1;transl_table=11
NC_012633.1	RefSeq	gene	998215	998532	.	+	.	ID=gene-RAF_RS05440;Name=RAF_RS05440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05440
NC_012633.1	Protein Homology	CDS	998215	998532	.	+	0	ID=cds-WP_041471933.1;Parent=gene-RAF_RS05440;Dbxref=GenBank:WP_041471933.1;Name=WP_041471933.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025154.5;locus_tag=RAF_RS05440;product=DoxX-like family protein;protein_id=WP_041471933.1;transl_table=11
NC_012633.1	RefSeq	gene	998603	998911	.	+	.	ID=gene-RAF_RS05445;Name=RAF_RS05445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05445;old_locus_tag=RAF_ORF0973
NC_012633.1	Protein Homology	CDS	998603	998911	.	+	0	ID=cds-WP_004997675.1;Parent=gene-RAF_RS05445;Dbxref=GenBank:WP_004997675.1;Name=WP_004997675.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997675.1;locus_tag=RAF_RS05445;product=DUF2269 domain-containing protein;protein_id=WP_004997675.1;transl_table=11
NC_012633.1	RefSeq	gene	999150	1000427	.	-	.	ID=gene-RAF_RS05450;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=RAF_RS05450;old_locus_tag=RAF_ORF0974
NC_012633.1	Protein Homology	CDS	999150	1000427	.	-	0	ID=cds-WP_012719952.1;Parent=gene-RAF_RS05450;Dbxref=GenBank:WP_012719952.1;Name=WP_012719952.1;Ontology_term=GO:0005524,GO:0008270,GO:0016887,GO:0046983;gbkey=CDS;gene=clpX;go_function=ATP binding|0005524||IEA,zinc ion binding|0008270||IEA,ATP hydrolysis activity|0016887||IEA,protein dimerization activity|0046983||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151748.1;locus_tag=RAF_RS05450;product=ATP-dependent Clp protease ATP-binding subunit ClpX;protein_id=WP_012719952.1;transl_table=11
NC_012633.1	RefSeq	gene	1000465	1001016	.	-	.	ID=gene-RAF_RS05455;Name=RAF_RS05455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05455;old_locus_tag=RAF_ORF0975
NC_012633.1	Protein Homology	CDS	1000465	1001016	.	-	0	ID=cds-WP_012719953.1;Parent=gene-RAF_RS05455;Dbxref=GenBank:WP_012719953.1;Name=WP_012719953.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442542.1;locus_tag=RAF_RS05455;product=GNAT family N-acetyltransferase;protein_id=WP_012719953.1;transl_table=11
NC_012633.1	RefSeq	gene	1001176	1001862	.	-	.	ID=gene-RAF_RS05460;Name=queC;gbkey=Gene;gene=queC;gene_biotype=protein_coding;locus_tag=RAF_RS05460;old_locus_tag=RAF_ORF0976
NC_012633.1	Protein Homology	CDS	1001176	1001862	.	-	0	ID=cds-WP_012719954.1;Parent=gene-RAF_RS05460;Dbxref=GenBank:WP_012719954.1;Name=WP_012719954.1;Ontology_term=GO:0008616;gbkey=CDS;gene=queC;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151205.1;locus_tag=RAF_RS05460;product=7-cyano-7-deazaguanine synthase QueC;protein_id=WP_012719954.1;transl_table=11
NC_012633.1	RefSeq	gene	1001859	1002203	.	-	.	ID=gene-RAF_RS05465;Name=RAF_RS05465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05465;old_locus_tag=RAF_ORF0977
NC_012633.1	Protein Homology	CDS	1001859	1002203	.	-	0	ID=cds-WP_012151206.1;Parent=gene-RAF_RS05465;Dbxref=GenBank:WP_012151206.1;Name=WP_012151206.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926508.1;locus_tag=RAF_RS05465;product=type II toxin-antitoxin system HicB family antitoxin;protein_id=WP_012151206.1;transl_table=11
NC_012633.1	RefSeq	gene	1002190	1002357	.	-	.	ID=gene-RAF_RS08205;Name=RAF_RS08205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08205
NC_012633.1	Protein Homology	CDS	1002190	1002357	.	-	0	ID=cds-WP_083762119.1;Parent=gene-RAF_RS08205;Dbxref=GenBank:WP_083762119.1;Name=WP_083762119.1;Ontology_term=GO:0003729;gbkey=CDS;go_function=mRNA binding|0003729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442544.1;locus_tag=RAF_RS08205;product=type II toxin-antitoxin system HicA family toxin;protein_id=WP_083762119.1;transl_table=11
NC_012633.1	RefSeq	gene	1002547	1002623	.	+	.	ID=gene-RAF_RS05470;Name=RAF_RS05470;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS05470;old_locus_tag=RAF_RNA31
NC_012633.1	tRNAscan-SE	tRNA	1002547	1002623	.	+	.	ID=rna-RAF_RS05470;Parent=gene-RAF_RS05470;anticodon=(pos:1002581..1002583);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS05470;product=tRNA-His
NC_012633.1	tRNAscan-SE	exon	1002547	1002623	.	+	.	ID=exon-RAF_RS05470-1;Parent=rna-RAF_RS05470;anticodon=(pos:1002581..1002583);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS05470;product=tRNA-His
NC_012633.1	RefSeq	gene	1002825	1004555	.	+	.	ID=gene-RAF_RS05475;Name=RAF_RS05475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05475;old_locus_tag=RAF_ORF0978
NC_012633.1	Protein Homology	CDS	1002825	1004555	.	+	0	ID=cds-WP_012719956.1;Parent=gene-RAF_RS05475;Dbxref=GenBank:WP_012719956.1;Name=WP_012719956.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410991.1;locus_tag=RAF_RS05475;product=ABC transporter ATP-binding protein;protein_id=WP_012719956.1;transl_table=11
NC_012633.1	RefSeq	gene	1004858	1005106	.	+	.	ID=gene-RAF_RS05480;Name=RAF_RS05480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05480;old_locus_tag=RAF_ORF0979
NC_012633.1	Protein Homology	CDS	1004858	1005106	.	+	0	ID=cds-WP_012719957.1;Parent=gene-RAF_RS05480;Dbxref=GenBank:WP_012719957.1;Name=WP_012719957.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442546.1;locus_tag=RAF_RS05480;product=DUF2673 domain-containing protein;protein_id=WP_012719957.1;transl_table=11
NC_012633.1	RefSeq	gene	1005773	1006945	.	+	.	ID=gene-RAF_RS05485;Name=RAF_RS05485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05485;old_locus_tag=RAF_ORF0980
NC_012633.1	Protein Homology	CDS	1005773	1006945	.	+	0	ID=cds-WP_012719958.1;Parent=gene-RAF_RS05485;Dbxref=GenBank:WP_012719958.1;Name=WP_012719958.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410992.1;locus_tag=RAF_RS05485;product=multidrug effflux MFS transporter;protein_id=WP_012719958.1;transl_table=11
NC_012633.1	RefSeq	gene	1007127	1008377	.	+	.	ID=gene-RAF_RS05490;Name=RAF_RS05490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05490;old_locus_tag=RAF_ORF0981
NC_012633.1	Protein Homology	CDS	1007127	1008377	.	+	0	ID=cds-WP_012719959.1;Parent=gene-RAF_RS05490;Dbxref=GenBank:WP_012719959.1;Name=WP_012719959.1;Ontology_term=GO:0042953,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392687.1;locus_tag=RAF_RS05490;product=lipoprotein-releasing ABC transporter permease subunit;protein_id=WP_012719959.1;transl_table=11
NC_012633.1	RefSeq	gene	1008370	1009035	.	+	.	ID=gene-RAF_RS05495;Name=RAF_RS05495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05495;old_locus_tag=RAF_ORF0982
NC_012633.1	Protein Homology	CDS	1008370	1009035	.	+	0	ID=cds-WP_012719960.1;Parent=gene-RAF_RS05495;Dbxref=GenBank:WP_012719960.1;Name=WP_012719960.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191131.1;locus_tag=RAF_RS05495;product=ABC transporter ATP-binding protein;protein_id=WP_012719960.1;transl_table=11
NC_012633.1	RefSeq	gene	1009254	1011155	.	+	.	ID=gene-RAF_RS05500;Name=RAF_RS05500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05500;old_locus_tag=RAF_ORF0983
NC_012633.1	Protein Homology	CDS	1009254	1011155	.	+	0	ID=cds-WP_012719961.1;Parent=gene-RAF_RS05500;Dbxref=GenBank:WP_012719961.1;Name=WP_012719961.1;Ontology_term=GO:0006508,GO:0008234;gbkey=CDS;go_function=cysteine-type peptidase activity|0008234||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719961.1;locus_tag=RAF_RS05500;product=Ulp1 family isopeptidase;protein_id=WP_012719961.1;transl_table=11
NC_012633.1	RefSeq	gene	1011230	1012504	.	+	.	ID=gene-RAF_RS05505;Name=RAF_RS05505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05505;old_locus_tag=RAF_ORF0984
NC_012633.1	Protein Homology	CDS	1011230	1012504	.	+	0	ID=cds-WP_012719962.1;Parent=gene-RAF_RS05505;Dbxref=GenBank:WP_012719962.1;Name=WP_012719962.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442551.1;locus_tag=RAF_RS05505;product=HlyC/CorC family transporter;protein_id=WP_012719962.1;transl_table=11
NC_012633.1	RefSeq	gene	1012497	1014485	.	+	.	ID=gene-RAF_RS05510;Name=RAF_RS05510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05510;old_locus_tag=RAF_ORF0985
NC_012633.1	Protein Homology	CDS	1012497	1014485	.	+	0	ID=cds-WP_012719963.1;Parent=gene-RAF_RS05510;Dbxref=GenBank:WP_012719963.1;Name=WP_012719963.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977658.1;locus_tag=RAF_RS05510;product=heme lyase CcmF/NrfE family subunit;protein_id=WP_012719963.1;transl_table=11
NC_012633.1	RefSeq	gene	1014482	1014772	.	-	.	ID=gene-RAF_RS05515;Name=RAF_RS05515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05515
NC_012633.1	Protein Homology	CDS	1014482	1014772	.	-	0	ID=cds-WP_041471934.1;Parent=gene-RAF_RS05515;Dbxref=GenBank:WP_041471934.1;Name=WP_041471934.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014410997.1;locus_tag=RAF_RS05515;product=hypothetical protein;protein_id=WP_041471934.1;transl_table=11
NC_012633.1	RefSeq	gene	1014963	1015316	.	-	.	ID=gene-RAF_RS05520;Name=RAF_RS05520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05520
NC_012633.1	Protein Homology	CDS	1014963	1015316	.	-	0	ID=cds-WP_041471935.1;Parent=gene-RAF_RS05520;Dbxref=GenBank:WP_041471935.1;Name=WP_041471935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926517.1;locus_tag=RAF_RS05520;product=hypothetical protein;protein_id=WP_041471935.1;transl_table=11
NC_012633.1	RefSeq	gene	1015725	1016303	.	-	.	ID=gene-RAF_RS10080;Name=RAF_RS10080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10080
NC_012633.1	GeneMarkS-2+	CDS	1015725	1016303	.	-	0	ID=cds-WP_234943886.1;Parent=gene-RAF_RS10080;Dbxref=GenBank:WP_234943886.1;Name=WP_234943886.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10080;product=hypothetical protein;protein_id=WP_234943886.1;transl_table=11
NC_012633.1	RefSeq	gene	1016307	1016672	.	-	.	ID=gene-RAF_RS10085;Name=RAF_RS10085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10085
NC_012633.1	GeneMarkS-2+	CDS	1016307	1016672	.	-	0	ID=cds-WP_234943887.1;Parent=gene-RAF_RS10085;Dbxref=GenBank:WP_234943887.1;Name=WP_234943887.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10085;product=hypothetical protein;protein_id=WP_234943887.1;transl_table=11
NC_012633.1	RefSeq	gene	1017088	1022052	.	-	.	ID=gene-RAF_RS05530;Name=ompB;gbkey=Gene;gene=ompB;gene_biotype=protein_coding;locus_tag=RAF_RS05530;old_locus_tag=RAF_ORF0990
NC_012633.1	Protein Homology	CDS	1017088	1022052	.	-	0	ID=cds-WP_012719964.1;Parent=gene-RAF_RS05530;Dbxref=GenBank:WP_012719964.1;Name=WP_012719964.1;gbkey=CDS;gene=ompB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728327.1;locus_tag=RAF_RS05530;product=outer membrane protein OmpB;protein_id=WP_012719964.1;transl_table=11
NC_012633.1	RefSeq	gene	1022444	1023049	.	-	.	ID=gene-RAF_RS05535;Name=RAF_RS05535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05535;old_locus_tag=RAF_ORF0991
NC_012633.1	Protein Homology	CDS	1022444	1023049	.	-	0	ID=cds-WP_012719965.1;Parent=gene-RAF_RS05535;Dbxref=GenBank:WP_012719965.1;Name=WP_012719965.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151220.1;locus_tag=RAF_RS05535;product=guanosine polyphosphate pyrophosphohydrolase;protein_id=WP_012719965.1;transl_table=11
NC_012633.1	RefSeq	gene	1023414	1024358	.	-	.	ID=gene-RAF_RS05540;Name=nagZ;gbkey=Gene;gene=nagZ;gene_biotype=protein_coding;locus_tag=RAF_RS05540;old_locus_tag=RAF_ORF0992
NC_012633.1	Protein Homology	CDS	1023414	1024358	.	-	0	ID=cds-WP_016830931.1;Parent=gene-RAF_RS05540;Dbxref=GenBank:WP_016830931.1;Name=WP_016830931.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=nagZ;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010421475.1;locus_tag=RAF_RS05540;product=beta-N-acetylhexosaminidase;protein_id=WP_016830931.1;transl_table=11
NC_012633.1	RefSeq	gene	1024401	1024697	.	-	.	ID=gene-RAF_RS05545;Name=RAF_RS05545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05545;old_locus_tag=RAF_ORF0993
NC_012633.1	Protein Homology	CDS	1024401	1024697	.	-	0	ID=cds-WP_014273726.1;Parent=gene-RAF_RS05545;Dbxref=GenBank:WP_014273726.1;Name=WP_014273726.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151222.1;locus_tag=RAF_RS05545;product=MerR family transcriptional regulator;protein_id=WP_014273726.1;transl_table=11
NC_012633.1	RefSeq	gene	1024913	1025200	.	-	.	ID=gene-RAF_RS05550;Name=RAF_RS05550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05550;old_locus_tag=RAF_ORF0994
NC_012633.1	Protein Homology	CDS	1024913	1025200	.	-	0	ID=cds-WP_004997606.1;Parent=gene-RAF_RS05550;Dbxref=GenBank:WP_004997606.1;Name=WP_004997606.1;Ontology_term=GO:0030261,GO:0003677,GO:0030527;gbkey=CDS;go_function=DNA binding|0003677||IEA,structural constituent of chromatin|0030527||IEA;go_process=chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191139.1;locus_tag=RAF_RS05550;product=HU family DNA-binding protein;protein_id=WP_004997606.1;transl_table=11
NC_012633.1	RefSeq	gene	1025348	1025815	.	-	.	ID=gene-RAF_RS05555;Name=RAF_RS05555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05555;old_locus_tag=RAF_ORF0995
NC_012633.1	Protein Homology	CDS	1025348	1025815	.	-	0	ID=cds-WP_012719967.1;Parent=gene-RAF_RS05555;Dbxref=GenBank:WP_012719967.1;Name=WP_012719967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442562.1;locus_tag=RAF_RS05555;product=hypothetical protein;protein_id=WP_012719967.1;transl_table=11
NC_012633.1	RefSeq	gene	1026325	1026795	.	+	.	ID=gene-RAF_RS05560;Name=bcp;gbkey=Gene;gene=bcp;gene_biotype=protein_coding;locus_tag=RAF_RS05560;old_locus_tag=RAF_ORF0996
NC_012633.1	Protein Homology	CDS	1026325	1026795	.	+	0	ID=cds-WP_012719968.1;Parent=gene-RAF_RS05560;Dbxref=GenBank:WP_012719968.1;Name=WP_012719968.1;Ontology_term=GO:0016209,GO:0016491;gbkey=CDS;gene=bcp;go_function=antioxidant activity|0016209||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008579244.1;locus_tag=RAF_RS05560;product=thioredoxin-dependent thiol peroxidase;protein_id=WP_012719968.1;transl_table=11
NC_012633.1	RefSeq	gene	1026915	1027787	.	-	.	ID=gene-RAF_RS05565;Name=RAF_RS05565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05565;old_locus_tag=RAF_ORF0997
NC_012633.1	Protein Homology	CDS	1026915	1027787	.	-	0	ID=cds-WP_012719969.1;Parent=gene-RAF_RS05565;Dbxref=GenBank:WP_012719969.1;Name=WP_012719969.1;Ontology_term=GO:0009245,GO:0008913,GO:0016740;gbkey=CDS;go_function=Kdo2-lipid IVA acyltransferase activity|0008913||IEA,transferase activity|0016740||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442565.1;locus_tag=RAF_RS05565;product=lipid A biosynthesis lauroyl acyltransferase;protein_id=WP_012719969.1;transl_table=11
NC_012633.1	RefSeq	gene	1027762	1028727	.	-	.	ID=gene-RAF_RS05570;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=RAF_RS05570;old_locus_tag=RAF_ORF0998
NC_012633.1	Protein Homology	CDS	1027762	1028727	.	-	0	ID=cds-WP_012719970.1;Parent=gene-RAF_RS05570;Dbxref=GenBank:WP_012719970.1;Name=WP_012719970.1;Ontology_term=GO:0009245,GO:0009029;gbkey=CDS;gene=lpxK;go_function=tetraacyldisaccharide 4'-kinase activity|0009029||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151226.1;locus_tag=RAF_RS05570;product=tetraacyldisaccharide 4'-kinase;protein_id=WP_012719970.1;transl_table=11
NC_012633.1	RefSeq	gene	1028731	1029585	.	-	.	ID=gene-RAF_RS05575;Name=RAF_RS05575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05575;old_locus_tag=RAF_ORF0999
NC_012633.1	Protein Homology	CDS	1028731	1029585	.	-	0	ID=cds-WP_012719971.1;Parent=gene-RAF_RS05575;Dbxref=GenBank:WP_012719971.1;Name=WP_012719971.1;Ontology_term=GO:0008237,GO:0046872;gbkey=CDS;go_function=metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364970.1;locus_tag=RAF_RS05575;product=M23 family metallopeptidase;protein_id=WP_012719971.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1029585	1030374	.	-	.	ID=gene-RAF_RS08880;Name=rlmJ;gbkey=Gene;gene=rlmJ;gene_biotype=pseudogene;locus_tag=RAF_RS08880;old_locus_tag=RAF_ORF1000;pseudo=true
NC_012633.1	Protein Homology	CDS	1029585	1030374	.	-	0	ID=cds-RAF_RS08880;Parent=gene-RAF_RS08880;Note=frameshifted;Ontology_term=GO:0070475,GO:0008649;gbkey=CDS;gene=rlmJ;go_function=rRNA methyltransferase activity|0008649||IEA;go_process=rRNA base methylation|0070475||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917215.1;locus_tag=RAF_RS08880;product=23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1030419	1030598	.	+	.	ID=gene-RAF_RS09050;Name=RAF_RS09050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09050
NC_012633.1	Protein Homology	CDS	1030419	1030598	.	+	0	ID=cds-WP_155813506.1;Parent=gene-RAF_RS09050;Dbxref=GenBank:WP_155813506.1;Name=WP_155813506.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917214.1;locus_tag=RAF_RS09050;product=hypothetical protein;protein_id=WP_155813506.1;transl_table=11
NC_012633.1	RefSeq	gene	1030670	1030978	.	-	.	ID=gene-RAF_RS08235;Name=rhuM;gbkey=Gene;gene=rhuM;gene_biotype=protein_coding;locus_tag=RAF_RS08235;old_locus_tag=RAF_ORF1002
NC_012633.1	Protein Homology	CDS	1030670	1030978	.	-	0	ID=cds-WP_012719972.1;Parent=gene-RAF_RS08235;Dbxref=GenBank:WP_012719972.1;Name=WP_012719972.1;gbkey=CDS;gene=rhuM;inference=COORDINATES: protein motif:HMM:NF024706.5;locus_tag=RAF_RS08235;product=RhuM family protein;protein_id=WP_012719972.1;transl_table=11
NC_012633.1	RefSeq	gene	1031092	1033161	.	-	.	ID=gene-RAF_RS05590;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=RAF_RS05590;old_locus_tag=RAF_ORF1003
NC_012633.1	Protein Homology	CDS	1031092	1033161	.	-	0	ID=cds-WP_012719973.1;Parent=gene-RAF_RS05590;Dbxref=GenBank:WP_012719973.1;Name=WP_012719973.1;Ontology_term=GO:0006260,GO:0006281,GO:0003677,GO:0003911;gbkey=CDS;gene=ligA;go_function=DNA binding|0003677||IEA,DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977672.1;locus_tag=RAF_RS05590;product=NAD-dependent DNA ligase LigA;protein_id=WP_012719973.1;transl_table=11
NC_012633.1	RefSeq	gene	1033263	1033388	.	-	.	ID=gene-RAF_RS10090;Name=RAF_RS10090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10090;old_locus_tag=RAF_ORF1004
NC_012633.1	Protein Homology	CDS	1033263	1033388	.	-	0	ID=cds-WP_083762123.1;Parent=gene-RAF_RS10090;Dbxref=GenBank:WP_083762123.1;Name=WP_083762123.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014643.5;locus_tag=RAF_RS10090;product=type II toxin-antitoxin system Phd/YefM family antitoxin;protein_id=WP_083762123.1;transl_table=11
NC_012633.1	RefSeq	gene	1033448	1034533	.	-	.	ID=gene-RAF_RS05595;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=RAF_RS05595;old_locus_tag=RAF_ORF1005
NC_012633.1	Protein Homology	CDS	1033448	1034533	.	-	0	ID=cds-WP_004997587.1;Parent=gene-RAF_RS05595;Dbxref=GenBank:WP_004997587.1;Name=WP_004997587.1;Ontology_term=GO:0006400,GO:0008479,GO:0005737;gbkey=CDS;gene=tgt;go_component=cytoplasm|0005737||IEA;go_function=tRNA-guanosine(34) queuine transglycosylase activity|0008479||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926529.1;locus_tag=RAF_RS05595;product=tRNA guanosine(34) transglycosylase Tgt;protein_id=WP_004997587.1;transl_table=11
NC_012633.1	RefSeq	gene	1034827	1035027	.	+	.	ID=gene-RAF_RS10095;Name=RAF_RS10095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10095
NC_012633.1	Protein Homology	CDS	1034827	1035027	.	+	0	ID=cds-WP_234943947.1;Parent=gene-RAF_RS10095;Dbxref=GenBank:WP_234943947.1;Name=WP_234943947.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010421590.1;locus_tag=RAF_RS10095;product=hypothetical protein;protein_id=WP_234943947.1;transl_table=11
NC_012633.1	RefSeq	gene	1035157	1035456	.	+	.	ID=gene-RAF_RS05600;Name=RAF_RS05600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05600;old_locus_tag=RAF_ORF1006
NC_012633.1	Protein Homology	CDS	1035157	1035456	.	+	0	ID=cds-WP_041471936.1;Parent=gene-RAF_RS05600;Dbxref=GenBank:WP_041471936.1;Name=WP_041471936.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977673.1;locus_tag=RAF_RS05600;product=bifunctional (p)ppGpp synthetase/guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=WP_041471936.1;transl_table=11
NC_012633.1	RefSeq	gene	1036310	1036831	.	-	.	ID=gene-RAF_RS10100;Name=RAF_RS10100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10100
NC_012633.1	Protein Homology	CDS	1036310	1036831	.	-	0	ID=cds-WP_234943888.1;Parent=gene-RAF_RS10100;Dbxref=GenBank:WP_234943888.1;Name=WP_234943888.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419926.1;locus_tag=RAF_RS10100;product=MFS transporter;protein_id=WP_234943888.1;transl_table=11
NC_012633.1	RefSeq	gene	1036991	1037116	.	-	.	ID=gene-RAF_RS10105;Name=RAF_RS10105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10105
NC_012633.1	Protein Homology	CDS	1036991	1037116	.	-	0	ID=cds-WP_014411011.1;Parent=gene-RAF_RS10105;Dbxref=GenBank:WP_014411011.1;Name=WP_014411011.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014411011.1;locus_tag=RAF_RS10105;product=hypothetical protein;protein_id=WP_014411011.1;transl_table=11
NC_012633.1	RefSeq	gene	1037515	1038045	.	+	.	ID=gene-RAF_RS05615;Name=RAF_RS05615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05615;old_locus_tag=RAF_ORF1011
NC_012633.1	Protein Homology	CDS	1037515	1038045	.	+	0	ID=cds-WP_041472041.1;Parent=gene-RAF_RS05615;Dbxref=GenBank:WP_041472041.1;Name=WP_041472041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270537.1;locus_tag=RAF_RS05615;product=hypothetical protein;protein_id=WP_041472041.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1038230	1038651	.	-	.	ID=gene-RAF_RS05620;Name=RAF_RS05620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05620;pseudo=true
NC_012633.1	Protein Homology	CDS	1038230	1038651	.	-	0	ID=cds-RAF_RS05620;Parent=gene-RAF_RS05620;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012152081.1;locus_tag=RAF_RS05620;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	pseudogene	1038699	1038983	.	-	.	ID=gene-RAF_RS10645;Name=RAF_RS10645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10645;pseudo=true
NC_012633.1	Protein Homology	CDS	1038699	1038983	.	-	0	ID=cds-RAF_RS10645;Parent=gene-RAF_RS10645;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011270535.1;locus_tag=RAF_RS10645;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1039147	1039596	.	-	.	ID=gene-RAF_RS05630;Name=mlaD;gbkey=Gene;gene=mlaD;gene_biotype=protein_coding;locus_tag=RAF_RS05630;old_locus_tag=RAF_ORF1014
NC_012633.1	Protein Homology	CDS	1039147	1039596	.	-	0	ID=cds-WP_012719978.1;Parent=gene-RAF_RS05630;Dbxref=GenBank:WP_012719978.1;Name=WP_012719978.1;Ontology_term=GO:0015914;gbkey=CDS;gene=mlaD;go_process=phospholipid transport|0015914||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392711.1;locus_tag=RAF_RS05630;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=WP_012719978.1;transl_table=11
NC_012633.1	RefSeq	gene	1039621	1039920	.	-	.	ID=gene-RAF_RS05635;Name=RAF_RS05635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05635;old_locus_tag=RAF_ORF1015
NC_012633.1	Protein Homology	CDS	1039621	1039920	.	-	0	ID=cds-WP_012719979.1;Parent=gene-RAF_RS05635;Dbxref=GenBank:WP_012719979.1;Name=WP_012719979.1;Ontology_term=GO:0032981,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=mitochondrial respiratory chain complex I assembly|0032981||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442576.1;locus_tag=RAF_RS05635;product=NADH-ubiquinone oxidoreductase subunit NDUFA12 family protein;protein_id=WP_012719979.1;transl_table=11
NC_012633.1	RefSeq	gene	1039908	1040375	.	-	.	ID=gene-RAF_RS05640;Name=rnhA;gbkey=Gene;gene=rnhA;gene_biotype=protein_coding;locus_tag=RAF_RS05640;old_locus_tag=RAF_ORF1016
NC_012633.1	Protein Homology	CDS	1039908	1040375	.	-	0	ID=cds-WP_012719980.1;Parent=gene-RAF_RS05640;Dbxref=GenBank:WP_012719980.1;Name=WP_012719980.1;Ontology_term=GO:0003676,GO:0004523;gbkey=CDS;gene=rnhA;go_function=nucleic acid binding|0003676||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442577.1;locus_tag=RAF_RS05640;product=ribonuclease HI;protein_id=WP_012719980.1;transl_table=11
NC_012633.1	RefSeq	gene	1040375	1040851	.	-	.	ID=gene-RAF_RS05645;Name=RAF_RS05645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05645;old_locus_tag=RAF_ORF1017
NC_012633.1	Protein Homology	CDS	1040375	1040851	.	-	0	ID=cds-WP_012719981.1;Parent=gene-RAF_RS05645;Dbxref=GenBank:WP_012719981.1;Name=WP_012719981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442578.1;locus_tag=RAF_RS05645;product=SspB family protein;protein_id=WP_012719981.1;transl_table=11
NC_012633.1	RefSeq	gene	1041048	1041556	.	-	.	ID=gene-RAF_RS07110;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=tmRNA;locus_tag=RAF_RS07110;old_locus_tag=RAF_RNA32
NC_012633.1	cmsearch	tmRNA	1041048	1041556	.	-	.	ID=rna-RAF_RS07110;Parent=gene-RAF_RS07110;Dbxref=RFAM:RF01849;Note=alphaproteobacterial-type;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS07110;product=transfer-messenger RNA
NC_012633.1	cmsearch	exon	1041048	1041556	.	-	.	ID=exon-RAF_RS07110-1;Parent=rna-RAF_RS07110;Dbxref=RFAM:RF01849;Note=alphaproteobacterial-type;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS07110;product=transfer-messenger RNA
NC_012633.1	RefSeq	gene	1041631	1042443	.	+	.	ID=gene-RAF_RS05650;Name=RAF_RS05650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05650;old_locus_tag=RAF_ORF1018
NC_012633.1	Protein Homology	CDS	1041631	1042443	.	+	0	ID=cds-WP_012719982.1;Parent=gene-RAF_RS05650;Dbxref=GenBank:WP_012719982.1;Name=WP_012719982.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945911.1;locus_tag=RAF_RS05650;product=LpxI family protein;protein_id=WP_012719982.1;transl_table=11
NC_012633.1	RefSeq	gene	1042437	1043012	.	+	.	ID=gene-RAF_RS05655;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=RAF_RS05655;old_locus_tag=RAF_ORF1019
NC_012633.1	Protein Homology	CDS	1042437	1043012	.	+	0	ID=cds-WP_010977684.1;Parent=gene-RAF_RS05655;Dbxref=GenBank:WP_010977684.1;Name=WP_010977684.1;Note=Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis.;Ontology_term=GO:0015937,GO:0004140,GO:0005524,GO:0005737;gbkey=CDS;gene=coaE;go_component=cytoplasm|0005737||IEA;go_function=dephospho-CoA kinase activity|0004140||IEA,ATP binding|0005524||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191151.1;locus_tag=RAF_RS05655;product=dephospho-CoA kinase;protein_id=WP_010977684.1;transl_table=11
NC_012633.1	RefSeq	gene	1043000	1043689	.	+	.	ID=gene-RAF_RS05660;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=protein_coding;locus_tag=RAF_RS05660;old_locus_tag=RAF_ORF1020
NC_012633.1	Protein Homology	CDS	1043000	1043689	.	+	0	ID=cds-WP_004997573.1;Parent=gene-RAF_RS05660;Dbxref=GenBank:WP_004997573.1;Name=WP_004997573.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=dnaQ;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477052.1;locus_tag=RAF_RS05660;product=DNA polymerase III subunit epsilon;protein_id=WP_004997573.1;transl_table=11
NC_012633.1	RefSeq	gene	1043816	1044538	.	+	.	ID=gene-RAF_RS05665;Name=RAF_RS05665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05665;old_locus_tag=RAF_ORF1021
NC_012633.1	Protein Homology	CDS	1043816	1044538	.	+	0	ID=cds-WP_012719983.1;Parent=gene-RAF_RS05665;Dbxref=GenBank:WP_012719983.1;Name=WP_012719983.1;Ontology_term=GO:0033617;gbkey=CDS;go_process=mitochondrial cytochrome c oxidase assembly|0033617||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945912.1;locus_tag=RAF_RS05665;product=SURF1 family protein;protein_id=WP_012719983.1;transl_table=11
NC_012633.1	RefSeq	gene	1044594	1047062	.	+	.	ID=gene-RAF_RS05670;Name=RAF_RS05670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05670;old_locus_tag=RAF_ORF1022
NC_012633.1	Protein Homology	CDS	1044594	1047062	.	+	0	ID=cds-WP_012719984.1;Parent=gene-RAF_RS05670;Dbxref=GenBank:WP_012719984.1;Name=WP_012719984.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273753.1;locus_tag=RAF_RS05670;product=UvrD-helicase domain-containing protein;protein_id=WP_012719984.1;transl_table=11
NC_012633.1	RefSeq	gene	1047543	1048112	.	-	.	ID=gene-RAF_RS05675;Name=RAF_RS05675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05675;old_locus_tag=RAF_ORF1023
NC_012633.1	Protein Homology	CDS	1047543	1048112	.	-	0	ID=cds-WP_012719985.1;Parent=gene-RAF_RS05675;Dbxref=GenBank:WP_012719985.1;Name=WP_012719985.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392720.1;locus_tag=RAF_RS05675;product=hypothetical protein;protein_id=WP_012719985.1;transl_table=11
NC_012633.1	RefSeq	gene	1048321	1049265	.	+	.	ID=gene-RAF_RS05680;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;locus_tag=RAF_RS05680;old_locus_tag=RAF_ORF1024
NC_012633.1	Protein Homology	CDS	1048321	1049265	.	+	0	ID=cds-WP_012719986.1;Parent=gene-RAF_RS05680;Dbxref=GenBank:WP_012719986.1;Name=WP_012719986.1;Ontology_term=GO:0006633,GO:0004314;gbkey=CDS;gene=fabD;go_function=[acyl-carrier-protein] S-malonyltransferase activity|0004314||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977688.1;locus_tag=RAF_RS05680;product=ACP S-malonyltransferase;protein_id=WP_012719986.1;transl_table=11
NC_012633.1	RefSeq	gene	1049620	1049790	.	+	.	ID=gene-RAF_RS09505;Name=RAF_RS09505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09505
NC_012633.1	Protein Homology	CDS	1049620	1049790	.	+	0	ID=cds-WP_200858171.1;Parent=gene-RAF_RS09505;Dbxref=GenBank:WP_200858171.1;Name=WP_200858171.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442587.1;locus_tag=RAF_RS09505;product=hypothetical protein;protein_id=WP_200858171.1;transl_table=11
NC_012633.1	RefSeq	gene	1050151	1050465	.	+	.	ID=gene-RAF_RS05700;Name=RAF_RS05700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05700;old_locus_tag=RAF_ORF1025
NC_012633.1	Protein Homology	CDS	1050151	1050465	.	+	0	ID=cds-WP_012719987.1;Parent=gene-RAF_RS05700;Dbxref=GenBank:WP_012719987.1;Name=WP_012719987.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977690.1;locus_tag=RAF_RS05700;product=hypothetical protein;protein_id=WP_012719987.1;transl_table=11
NC_012633.1	RefSeq	gene	1050532	1050623	.	+	.	ID=gene-RAF_RS05705;Name=RAF_RS05705;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS05705;old_locus_tag=RAF_RNA33
NC_012633.1	tRNAscan-SE	tRNA	1050532	1050623	.	+	.	ID=rna-RAF_RS05705;Parent=gene-RAF_RS05705;anticodon=(pos:1050566..1050568);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS05705;product=tRNA-Ser
NC_012633.1	tRNAscan-SE	exon	1050532	1050623	.	+	.	ID=exon-RAF_RS05705-1;Parent=rna-RAF_RS05705;anticodon=(pos:1050566..1050568);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS05705;product=tRNA-Ser
NC_012633.1	RefSeq	gene	1050998	1051363	.	-	.	ID=gene-RAF_RS05710;Name=RAF_RS05710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05710;old_locus_tag=RAF_ORF1026
NC_012633.1	Protein Homology	CDS	1050998	1051363	.	-	0	ID=cds-WP_012719988.1;Parent=gene-RAF_RS05710;Dbxref=GenBank:WP_012719988.1;Name=WP_012719988.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770349.1;locus_tag=RAF_RS05710;product=hypothetical protein;protein_id=WP_012719988.1;transl_table=11
NC_012633.1	RefSeq	gene	1051749	1051937	.	+	.	ID=gene-RAF_RS05715;Name=RAF_RS05715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05715
NC_012633.1	Protein Homology	CDS	1051749	1051937	.	+	0	ID=cds-WP_004997554.1;Parent=gene-RAF_RS05715;Dbxref=GenBank:WP_004997554.1;Name=WP_004997554.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997554.1;locus_tag=RAF_RS05715;product=hypothetical protein;protein_id=WP_004997554.1;transl_table=11
NC_012633.1	RefSeq	gene	1053194	1053403	.	+	.	ID=gene-RAF_RS05720;Name=RAF_RS05720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05720
NC_012633.1	Protein Homology	CDS	1053194	1053403	.	+	0	ID=cds-WP_049752714.1;Parent=gene-RAF_RS05720;Dbxref=GenBank:WP_049752714.1;Name=WP_049752714.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019231776.1;locus_tag=RAF_RS05720;product=hypothetical protein;protein_id=WP_049752714.1;transl_table=11
NC_012633.1	RefSeq	gene	1053467	1053628	.	+	.	ID=gene-RAF_RS05725;Name=RAF_RS05725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05725
NC_012633.1	GeneMarkS-2+	CDS	1053467	1053628	.	+	0	ID=cds-WP_234943889.1;Parent=gene-RAF_RS05725;Dbxref=GenBank:WP_234943889.1;Name=WP_234943889.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS05725;product=hypothetical protein;protein_id=WP_234943889.1;transl_table=11
NC_012633.1	RefSeq	gene	1054149	1054382	.	+	.	ID=gene-RAF_RS05730;Name=RAF_RS05730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05730
NC_012633.1	Protein Homology	CDS	1054149	1054382	.	+	0	ID=cds-WP_041471937.1;Parent=gene-RAF_RS05730;Dbxref=GenBank:WP_041471937.1;Name=WP_041471937.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770346.1;locus_tag=RAF_RS05730;product=hypothetical protein;protein_id=WP_041471937.1;transl_table=11
NC_012633.1	RefSeq	gene	1054639	1054782	.	-	.	ID=gene-RAF_RS10110;Name=RAF_RS10110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10110
NC_012633.1	GeneMarkS-2+	CDS	1054639	1054782	.	-	0	ID=cds-WP_016770345.1;Parent=gene-RAF_RS10110;Dbxref=GenBank:WP_016770345.1;Name=WP_016770345.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10110;product=DNA2/NAM7 family helicase;protein_id=WP_016770345.1;transl_table=11
NC_012633.1	RefSeq	gene	1055008	1055220	.	-	.	ID=gene-RAF_RS09060;Name=RAF_RS09060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09060
NC_012633.1	Protein Homology	CDS	1055008	1055220	.	-	0	ID=cds-WP_041471938.1;Parent=gene-RAF_RS09060;Dbxref=GenBank:WP_041471938.1;Name=WP_041471938.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770344.1;locus_tag=RAF_RS09060;product=hypothetical protein;protein_id=WP_041471938.1;transl_table=11
NC_012633.1	RefSeq	gene	1055245	1055544	.	-	.	ID=gene-RAF_RS09065;Name=RAF_RS09065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09065
NC_012633.1	GeneMarkS-2+	CDS	1055245	1055544	.	-	0	ID=cds-WP_234943890.1;Parent=gene-RAF_RS09065;Dbxref=GenBank:WP_234943890.1;Name=WP_234943890.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09065;product=hypothetical protein;protein_id=WP_234943890.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1055619	1055916	.	-	.	ID=gene-RAF_RS10650;Name=RAF_RS10650;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10650;pseudo=true
NC_012633.1	Protein Homology	CDS	1055619	1055916	.	-	0	ID=cds-RAF_RS10650;Parent=gene-RAF_RS10650;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770342.1;locus_tag=RAF_RS10650;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1056018	1056386	.	-	.	ID=gene-RAF_RS09075;Name=RAF_RS09075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09075
NC_012633.1	Protein Homology	CDS	1056018	1056386	.	-	0	ID=cds-WP_041471940.1;Parent=gene-RAF_RS09075;Dbxref=GenBank:WP_041471940.1;Name=WP_041471940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014411025.1;locus_tag=RAF_RS09075;product=hypothetical protein;protein_id=WP_041471940.1;transl_table=11
NC_012633.1	RefSeq	gene	1056393	1057112	.	-	.	ID=gene-RAF_RS10115;Name=RAF_RS10115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10115
NC_012633.1	Protein Homology	CDS	1056393	1057112	.	-	0	ID=cds-WP_234943891.1;Parent=gene-RAF_RS10115;Dbxref=GenBank:WP_234943891.1;Name=WP_234943891.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770340.1;locus_tag=RAF_RS10115;product=DNA helicase;protein_id=WP_234943891.1;transl_table=11
NC_012633.1	RefSeq	gene	1057146	1057412	.	-	.	ID=gene-RAF_RS09085;Name=RAF_RS09085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09085
NC_012633.1	Protein Homology	CDS	1057146	1057412	.	-	0	ID=cds-WP_158299174.1;Parent=gene-RAF_RS09085;Dbxref=GenBank:WP_158299174.1;Name=WP_158299174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977701.1;locus_tag=RAF_RS09085;product=hypothetical protein;protein_id=WP_158299174.1;transl_table=11
NC_012633.1	RefSeq	gene	1057342	1057563	.	-	.	ID=gene-RAF_RS09090;Name=RAF_RS09090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09090
NC_012633.1	Protein Homology	CDS	1057342	1057563	.	-	0	ID=cds-WP_041471942.1;Parent=gene-RAF_RS09090;Dbxref=GenBank:WP_041471942.1;Name=WP_041471942.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926545.1;locus_tag=RAF_RS09090;product=hypothetical protein;protein_id=WP_041471942.1;transl_table=11
NC_012633.1	RefSeq	gene	1057578	1057757	.	-	.	ID=gene-RAF_RS05765;Name=RAF_RS05765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05765
NC_012633.1	Protein Homology	CDS	1057578	1057757	.	-	0	ID=cds-WP_014411028.1;Parent=gene-RAF_RS05765;Dbxref=GenBank:WP_014411028.1;Name=WP_014411028.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770339.1;locus_tag=RAF_RS05765;product=hypothetical protein;protein_id=WP_014411028.1;transl_table=11
NC_012633.1	RefSeq	gene	1057949	1058137	.	+	.	ID=gene-RAF_RS08290;Name=RAF_RS08290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08290
NC_012633.1	GeneMarkS-2+	CDS	1057949	1058137	.	+	0	ID=cds-WP_148206975.1;Parent=gene-RAF_RS08290;Dbxref=GenBank:WP_148206975.1;Name=WP_148206975.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS08290;product=hypothetical protein;protein_id=WP_148206975.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1058209	1059407	.	-	.	ID=gene-RAF_RS05770;Name=RAF_RS05770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05770;old_locus_tag=RAF_ORF1033;pseudo=true
NC_012633.1	Protein Homology	CDS	1058209	1059407	.	-	0	ID=cds-RAF_RS05770;Parent=gene-RAF_RS05770;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917183.1;locus_tag=RAF_RS05770;product=acetyl-CoA C-acetyltransferase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1059404	1059577	.	-	.	ID=gene-RAF_RS10120;Name=RAF_RS10120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10120
NC_012633.1	Protein Homology	CDS	1059404	1059577	.	-	0	ID=cds-WP_083762125.1;Parent=gene-RAF_RS10120;Dbxref=GenBank:WP_083762125.1;Name=WP_083762125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014411031.1;locus_tag=RAF_RS10120;product=alpha/beta hydrolase family protein;protein_id=WP_083762125.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1059605	1060286	.	-	.	ID=gene-RAF_RS10655;Name=RAF_RS10655;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10655;old_locus_tag=RAF_ORF1034;pseudo=true
NC_012633.1	Protein Homology	CDS	1059605	1060286	.	-	0	ID=cds-RAF_RS10655;Parent=gene-RAF_RS10655;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014362496.1;locus_tag=RAF_RS10655;product=alpha/beta hydrolase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1060635	1062134	.	+	.	ID=gene-RAF_RS05785;Name=tlc5;gbkey=Gene;gene=tlc5;gene_biotype=protein_coding;locus_tag=RAF_RS05785;old_locus_tag=RAF_ORF1037
NC_012633.1	Protein Homology	CDS	1060635	1062134	.	+	0	ID=cds-WP_012719990.1;Parent=gene-RAF_RS05785;Dbxref=GenBank:WP_012719990.1;Name=WP_012719990.1;gbkey=CDS;gene=tlc5;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011476837.1;locus_tag=RAF_RS05785;product=GTP/GDP exchange transporter Tlc5;protein_id=WP_012719990.1;transl_table=11
NC_012633.1	RefSeq	gene	1062657	1063088	.	-	.	ID=gene-RAF_RS05790;Name=RAF_RS05790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05790;old_locus_tag=RAF_ORF1038
NC_012633.1	Protein Homology	CDS	1062657	1063088	.	-	0	ID=cds-WP_083762126.1;Parent=gene-RAF_RS05790;Dbxref=GenBank:WP_083762126.1;Name=WP_083762126.1;Ontology_term=GO:0009132,GO:0016817,GO:0046872;gbkey=CDS;go_function=hydrolase activity%2C acting on acid anhydrides|0016817||IEA,metal ion binding|0046872||IEA;go_process=nucleoside diphosphate metabolic process|0009132||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012153120.1;locus_tag=RAF_RS05790;product=NUDIX hydrolase;protein_id=WP_083762126.1;transl_table=11
NC_012633.1	RefSeq	gene	1063098	1063211	.	-	.	ID=gene-RAF_RS05795;Name=RAF_RS05795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05795
NC_012633.1	Protein Homology	CDS	1063098	1063211	.	-	0	ID=cds-WP_014411033.1;Parent=gene-RAF_RS05795;Dbxref=GenBank:WP_014411033.1;Name=WP_014411033.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014363246.1;locus_tag=RAF_RS05795;product=hypothetical protein;protein_id=WP_014411033.1;transl_table=11
NC_012633.1	RefSeq	gene	1063429	1063650	.	+	.	ID=gene-RAF_RS05800;Name=RAF_RS05800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05800
NC_012633.1	Protein Homology	CDS	1063429	1063650	.	+	0	ID=cds-WP_041471944.1;Parent=gene-RAF_RS05800;Dbxref=GenBank:WP_041471944.1;Name=WP_041471944.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014363247.1;locus_tag=RAF_RS05800;product=hypothetical protein;protein_id=WP_041471944.1;transl_table=11
NC_012633.1	RefSeq	gene	1063703	1064602	.	-	.	ID=gene-RAF_RS05805;Name=tlyC;gbkey=Gene;gene=tlyC;gene_biotype=protein_coding;locus_tag=RAF_RS05805;old_locus_tag=RAF_ORF1039
NC_012633.1	Protein Homology	CDS	1063703	1064602	.	-	0	ID=cds-WP_012719992.1;Parent=gene-RAF_RS05805;Dbxref=GenBank:WP_012719992.1;Name=WP_012719992.1;gbkey=CDS;gene=tlyC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012719992.1;locus_tag=RAF_RS05805;product=hemolysin C;protein_id=WP_012719992.1;transl_table=11
NC_012633.1	RefSeq	gene	1064619	1065122	.	-	.	ID=gene-RAF_RS05810;Name=ybeY;gbkey=Gene;gene=ybeY;gene_biotype=protein_coding;locus_tag=RAF_RS05810;old_locus_tag=RAF_ORF1040
NC_012633.1	Protein Homology	CDS	1064619	1065122	.	-	0	ID=cds-WP_012719993.1;Parent=gene-RAF_RS05810;Dbxref=GenBank:WP_012719993.1;Name=WP_012719993.1;Ontology_term=GO:0042254,GO:0004540,GO:0046872;gbkey=CDS;gene=ybeY;go_function=RNA nuclease activity|0004540||IEA,metal ion binding|0046872||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271491.1;locus_tag=RAF_RS05810;product=rRNA maturation RNase YbeY;protein_id=WP_012719993.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1065149	1065370	.	-	.	ID=gene-RAF_RS05815;Name=RAF_RS05815;end_range=1065370,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05815;old_locus_tag=RAF_ORF1041;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	1065149	1065370	.	-	0	ID=cds-RAF_RS05815;Parent=gene-RAF_RS05815;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006402,GO:0016075,GO:0003677,GO:0003723,GO:0004521;end_range=1065370,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,RNA binding|0003723||IEA,RNA endonuclease activity|0004521||IEA;go_process=mRNA catabolic process|0006402||IEA,rRNA catabolic process|0016075||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997524.1;locus_tag=RAF_RS05815;partial=true;product=type II toxin-antitoxin system PemK/MazF family toxin;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1065441	1065671	.	-	.	ID=gene-RAF_RS05820;Name=RAF_RS05820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05820;old_locus_tag=RAF_ORF1042
NC_012633.1	Protein Homology	CDS	1065441	1065671	.	-	0	ID=cds-WP_012719995.1;Parent=gene-RAF_RS05820;Dbxref=GenBank:WP_012719995.1;Name=WP_012719995.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419938.1;locus_tag=RAF_RS05820;product=hypothetical protein;protein_id=WP_012719995.1;transl_table=11
NC_012633.1	RefSeq	gene	1065804	1066694	.	-	.	ID=gene-RAF_RS05825;Name=lipA;gbkey=Gene;gene=lipA;gene_biotype=protein_coding;locus_tag=RAF_RS05825;old_locus_tag=RAF_ORF1043
NC_012633.1	Protein Homology	CDS	1065804	1066694	.	-	0	ID=cds-WP_012719996.1;Parent=gene-RAF_RS05825;Dbxref=GenBank:WP_012719996.1;Name=WP_012719996.1;Ontology_term=GO:0009107,GO:0016992,GO:0051539,GO:1904047;gbkey=CDS;gene=lipA;go_function=lipoate synthase activity|0016992||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=lipoate biosynthetic process|0009107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012149070.1;locus_tag=RAF_RS05825;product=lipoyl synthase;protein_id=WP_012719996.1;transl_table=11
NC_012633.1	RefSeq	gene	1066687	1067949	.	-	.	ID=gene-RAF_RS05830;Name=glyA;gbkey=Gene;gene=glyA;gene_biotype=protein_coding;locus_tag=RAF_RS05830;old_locus_tag=RAF_ORF1044
NC_012633.1	Protein Homology	CDS	1066687	1067949	.	-	0	ID=cds-WP_010977717.1;Parent=gene-RAF_RS05830;Dbxref=GenBank:WP_010977717.1;Name=WP_010977717.1;Ontology_term=GO:0019264,GO:0004372,GO:0008270,GO:0030170,GO:0070905;gbkey=CDS;gene=glyA;go_function=glycine hydroxymethyltransferase activity|0004372||IEA,zinc ion binding|0008270||IEA,pyridoxal phosphate binding|0030170||IEA,serine binding|0070905||IEA;go_process=glycine biosynthetic process from serine|0019264||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151264.1;locus_tag=RAF_RS05830;product=serine hydroxymethyltransferase;protein_id=WP_010977717.1;transl_table=11
NC_012633.1	RefSeq	gene	1068064	1068714	.	-	.	ID=gene-RAF_RS05835;Name=RAF_RS05835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05835;old_locus_tag=RAF_ORF1045
NC_012633.1	Protein Homology	CDS	1068064	1068714	.	-	0	ID=cds-WP_012719997.1;Parent=gene-RAF_RS05835;Dbxref=GenBank:WP_012719997.1;Name=WP_012719997.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997508.1;locus_tag=RAF_RS05835;product=hydrolase;protein_id=WP_012719997.1;transl_table=11
NC_012633.1	RefSeq	gene	1068870	1069193	.	-	.	ID=gene-RAF_RS05840;Name=grxD;gbkey=Gene;gene=grxD;gene_biotype=protein_coding;locus_tag=RAF_RS05840;old_locus_tag=RAF_ORF1046
NC_012633.1	Protein Homology	CDS	1068870	1069193	.	-	0	ID=cds-WP_041472045.1;Parent=gene-RAF_RS05840;Dbxref=GenBank:WP_041472045.1;Name=WP_041472045.1;Ontology_term=GO:0009055;gbkey=CDS;gene=grxD;go_function=electron transfer activity|0009055||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409020.1;locus_tag=RAF_RS05840;product=Grx4 family monothiol glutaredoxin;protein_id=WP_041472045.1;transl_table=11
NC_012633.1	RefSeq	gene	1069243	1069875	.	+	.	ID=gene-RAF_RS05845;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;locus_tag=RAF_RS05845;old_locus_tag=RAF_ORF1047
NC_012633.1	Protein Homology	CDS	1069243	1069875	.	+	0	ID=cds-WP_012719999.1;Parent=gene-RAF_RS05845;Dbxref=GenBank:WP_012719999.1;Name=WP_012719999.1;Ontology_term=GO:0006281,GO:0140078;gbkey=CDS;gene=nth;go_function=class I DNA-(apurinic or apyrimidinic site) endonuclease activity|0140078||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997504.1;locus_tag=RAF_RS05845;product=endonuclease III;protein_id=WP_012719999.1;transl_table=11
NC_012633.1	RefSeq	gene	1069891	1070064	.	-	.	ID=gene-RAF_RS09510;Name=RAF_RS09510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09510
NC_012633.1	Protein Homology	CDS	1069891	1070064	.	-	0	ID=cds-WP_200858172.1;Parent=gene-RAF_RS09510;Dbxref=GenBank:WP_200858172.1;Name=WP_200858172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012262579.1;locus_tag=RAF_RS09510;product=hypothetical protein;protein_id=WP_200858172.1;transl_table=11
NC_012633.1	RefSeq	gene	1070093	1070470	.	-	.	ID=gene-RAF_RS05850;Name=RAF_RS05850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05850
NC_012633.1	Protein Homology	CDS	1070093	1070470	.	-	0	ID=cds-WP_041471945.1;Parent=gene-RAF_RS05850;Dbxref=GenBank:WP_041471945.1;Name=WP_041471945.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151269.1;locus_tag=RAF_RS05850;product=hypothetical protein;protein_id=WP_041471945.1;transl_table=11
NC_012633.1	RefSeq	gene	1070458	1070817	.	-	.	ID=gene-RAF_RS10130;Name=RAF_RS10130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10130
NC_012633.1	Protein Homology	CDS	1070458	1070817	.	-	0	ID=cds-WP_234943893.1;Parent=gene-RAF_RS10130;Dbxref=GenBank:WP_234943893.1;Name=WP_234943893.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977723.1;locus_tag=RAF_RS10130;product=hypothetical protein;protein_id=WP_234943893.1;transl_table=11
NC_012633.1	RefSeq	gene	1071481	1071657	.	+	.	ID=gene-RAF_RS05870;Name=RAF_RS05870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05870;old_locus_tag=RAF_ORF1050
NC_012633.1	Protein Homology	CDS	1071481	1071657	.	+	0	ID=cds-WP_004997492.1;Parent=gene-RAF_RS05870;Dbxref=GenBank:WP_004997492.1;Name=WP_004997492.1;Ontology_term=GO:0009636,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=response to toxic substance|0009636||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409024.1;locus_tag=RAF_RS05870;product=entericidin A/B family lipoprotein;protein_id=WP_004997492.1;transl_table=11
NC_012633.1	RefSeq	gene	1071767	1071994	.	-	.	ID=gene-RAF_RS10135;Name=RAF_RS10135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10135
NC_012633.1	Protein Homology	CDS	1071767	1071994	.	-	0	ID=cds-WP_234943894.1;Parent=gene-RAF_RS10135;Dbxref=GenBank:WP_234943894.1;Name=WP_234943894.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014365438.1;locus_tag=RAF_RS10135;product=hypothetical protein;protein_id=WP_234943894.1;transl_table=11
NC_012633.1	RefSeq	gene	1072055	1072363	.	-	.	ID=gene-RAF_RS10435;Name=RAF_RS10435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10435
NC_012633.1	Protein Homology	CDS	1072055	1072363	.	-	0	ID=cds-WP_041471946.1;Parent=gene-RAF_RS10435;Dbxref=GenBank:WP_041471946.1;Name=WP_041471946.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024194.5;locus_tag=RAF_RS10435;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_041471946.1;transl_table=11
NC_012633.1	RefSeq	gene	1072372	1072608	.	-	.	ID=gene-RAF_RS10440;Name=RAF_RS10440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10440
NC_012633.1	Protein Homology	CDS	1072372	1072608	.	-	0	ID=cds-WP_010977728.1;Parent=gene-RAF_RS10440;Dbxref=GenBank:WP_010977728.1;Name=WP_010977728.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024194.5;locus_tag=RAF_RS10440;product=PD-(D/E)XK nuclease family transposase;protein_id=WP_010977728.1;transl_table=11
NC_012633.1	RefSeq	gene	1072684	1073529	.	-	.	ID=gene-RAF_RS05890;Name=rsmI;gbkey=Gene;gene=rsmI;gene_biotype=protein_coding;locus_tag=RAF_RS05890;old_locus_tag=RAF_ORF1053
NC_012633.1	Protein Homology	CDS	1072684	1073529	.	-	0	ID=cds-WP_012720001.1;Parent=gene-RAF_RS05890;Dbxref=GenBank:WP_012720001.1;Name=WP_012720001.1;Ontology_term=GO:0000451,GO:0008649,GO:0008757;gbkey=CDS;gene=rsmI;go_function=rRNA methyltransferase activity|0008649||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=rRNA 2'-O-methylation|0000451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442611.1;locus_tag=RAF_RS05890;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=WP_012720001.1;transl_table=11
NC_012633.1	RefSeq	gene	1073554	1074672	.	+	.	ID=gene-RAF_RS05895;Name=RAF_RS05895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05895;old_locus_tag=RAF_ORF1054
NC_012633.1	Protein Homology	CDS	1073554	1074672	.	+	0	ID=cds-WP_012720002.1;Parent=gene-RAF_RS05895;Dbxref=GenBank:WP_012720002.1;Name=WP_012720002.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014014756.1;locus_tag=RAF_RS05895;product=penicillin-binding protein activator;protein_id=WP_012720002.1;transl_table=11
NC_012633.1	RefSeq	gene	1074908	1075069	.	-	.	ID=gene-RAF_RS05900;Name=RAF_RS05900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05900;old_locus_tag=RAF_ORF1055
NC_012633.1	Protein Homology	CDS	1074908	1075069	.	-	0	ID=cds-WP_012720003.1;Parent=gene-RAF_RS05900;Dbxref=GenBank:WP_012720003.1;Name=WP_012720003.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977731.1;locus_tag=RAF_RS05900;product=Sec-independent protein translocase subunit TatA;protein_id=WP_012720003.1;transl_table=11
NC_012633.1	RefSeq	gene	1075150	1075749	.	+	.	ID=gene-RAF_RS05905;Name=RAF_RS05905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05905;old_locus_tag=RAF_ORF1056
NC_012633.1	Protein Homology	CDS	1075150	1075749	.	+	0	ID=cds-WP_012720004.1;Parent=gene-RAF_RS05905;Dbxref=GenBank:WP_012720004.1;Name=WP_012720004.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442613.1;locus_tag=RAF_RS05905;product=phosphatidylglycerophosphatase A;protein_id=WP_012720004.1;transl_table=11
NC_012633.1	RefSeq	gene	1075838	1076155	.	+	.	ID=gene-RAF_RS05910;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=RAF_RS05910;old_locus_tag=RAF_ORF1057
NC_012633.1	Protein Homology	CDS	1075838	1076155	.	+	0	ID=cds-WP_004997480.1;Parent=gene-RAF_RS05910;Dbxref=GenBank:WP_004997480.1;Name=WP_004997480.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rplU;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014365432.1;locus_tag=RAF_RS05910;product=50S ribosomal protein L21;protein_id=WP_004997480.1;transl_table=11
NC_012633.1	RefSeq	gene	1076180	1076440	.	+	.	ID=gene-RAF_RS05915;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=RAF_RS05915;old_locus_tag=RAF_ORF1058
NC_012633.1	Protein Homology	CDS	1076180	1076440	.	+	0	ID=cds-WP_012720005.1;Parent=gene-RAF_RS05915;Dbxref=GenBank:WP_012720005.1;Name=WP_012720005.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmA;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945935.1;locus_tag=RAF_RS05915;product=50S ribosomal protein L27;protein_id=WP_012720005.1;transl_table=11
NC_012633.1	RefSeq	gene	1076721	1077926	.	+	.	ID=gene-RAF_RS05920;Name=RAF_RS05920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05920;old_locus_tag=RAF_ORF1059
NC_012633.1	Protein Homology	CDS	1076721	1077926	.	+	0	ID=cds-WP_012720006.1;Parent=gene-RAF_RS05920;Dbxref=GenBank:WP_012720006.1;Name=WP_012720006.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271504.1;locus_tag=RAF_RS05920;product=aspartate kinase;protein_id=WP_012720006.1;transl_table=11
NC_012633.1	RefSeq	gene	1078213	1078707	.	+	.	ID=gene-RAF_RS05925;Name=RAF_RS05925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05925;old_locus_tag=RAF_ORF1060
NC_012633.1	Protein Homology	CDS	1078213	1078707	.	+	0	ID=cds-WP_012720007.1;Parent=gene-RAF_RS05925;Dbxref=GenBank:WP_012720007.1;Name=WP_012720007.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273777.1;locus_tag=RAF_RS05925;product=hypothetical protein;protein_id=WP_012720007.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1078863	1078996	.	+	.	ID=gene-RAF_RS10660;Name=RAF_RS10660;end_range=1078996,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10660;partial=true;pseudo=true;start_range=.,1078863
NC_012633.1	Protein Homology	CDS	1078863	1078996	.	+	0	ID=cds-RAF_RS10660;Parent=gene-RAF_RS10660;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1078996,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977032.1;locus_tag=RAF_RS10660;partial=true;product=palindromic element RPE3 domain-containing protein;pseudo=true;start_range=.,1078863;transl_table=11
NC_012633.1	RefSeq	gene	1079051	1079365	.	+	.	ID=gene-RAF_RS05935;Name=RAF_RS05935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05935
NC_012633.1	Protein Homology	CDS	1079051	1079365	.	+	0	ID=cds-WP_083762127.1;Parent=gene-RAF_RS05935;Dbxref=GenBank:WP_083762127.1;Name=WP_083762127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917160.1;locus_tag=RAF_RS05935;product=MBL fold metallo-hydrolase;protein_id=WP_083762127.1;transl_table=11
NC_012633.1	RefSeq	gene	1079465	1079626	.	+	.	ID=gene-RAF_RS05940;Name=RAF_RS05940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05940
NC_012633.1	Protein Homology	CDS	1079465	1079626	.	+	0	ID=cds-WP_004997461.1;Parent=gene-RAF_RS05940;Dbxref=GenBank:WP_004997461.1;Name=WP_004997461.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997461.1;locus_tag=RAF_RS05940;product=hypothetical protein;protein_id=WP_004997461.1;transl_table=11
NC_012633.1	RefSeq	gene	1079759	1080055	.	-	.	ID=gene-RAF_RS05945;Name=RAF_RS05945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05945
NC_012633.1	Protein Homology	CDS	1079759	1080055	.	-	0	ID=cds-WP_041471948.1;Parent=gene-RAF_RS05945;Dbxref=GenBank:WP_041471948.1;Name=WP_041471948.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770449.1;locus_tag=RAF_RS05945;product=hypothetical protein;protein_id=WP_041471948.1;transl_table=11
NC_012633.1	RefSeq	gene	1080055	1080315	.	-	.	ID=gene-RAF_RS05950;Name=RAF_RS05950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05950
NC_012633.1	Protein Homology	CDS	1080055	1080315	.	-	0	ID=cds-WP_041471949.1;Parent=gene-RAF_RS05950;Dbxref=GenBank:WP_041471949.1;Name=WP_041471949.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997459.1;locus_tag=RAF_RS05950;product=hypothetical protein;protein_id=WP_041471949.1;transl_table=11
NC_012633.1	RefSeq	gene	1080417	1081658	.	-	.	ID=gene-RAF_RS05955;Name=RAF_RS05955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05955;old_locus_tag=RAF_ORF1065
NC_012633.1	Protein Homology	CDS	1080417	1081658	.	-	0	ID=cds-WP_012720008.1;Parent=gene-RAF_RS05955;Dbxref=GenBank:WP_012720008.1;Name=WP_012720008.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442619.1;locus_tag=RAF_RS05955;product=MFS transporter;protein_id=WP_012720008.1;transl_table=11
NC_012633.1	RefSeq	gene	1081818	1081976	.	-	.	ID=gene-RAF_RS08300;Name=ssrS;gbkey=Gene;gene=ssrS;gene_biotype=ncRNA;locus_tag=RAF_RS08300
NC_012633.1	cmsearch	ncRNA	1081818	1081976	.	-	.	ID=rna-RAF_RS08300;Parent=gene-RAF_RS08300;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS08300;product=6S RNA
NC_012633.1	cmsearch	exon	1081818	1081976	.	-	.	ID=exon-RAF_RS08300-1;Parent=rna-RAF_RS08300;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS08300;product=6S RNA
NC_012633.1	RefSeq	gene	1081986	1082303	.	-	.	ID=gene-RAF_RS05960;Name=RAF_RS05960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05960;old_locus_tag=RAF_ORF1067
NC_012633.1	Protein Homology	CDS	1081986	1082303	.	-	0	ID=cds-WP_012720010.1;Parent=gene-RAF_RS05960;Dbxref=GenBank:WP_012720010.1;Name=WP_012720010.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596991.1;locus_tag=RAF_RS05960;product=cell division protein ZapA;protein_id=WP_012720010.1;transl_table=11
NC_012633.1	RefSeq	gene	1082306	1082653	.	-	.	ID=gene-RAF_RS05965;Name=RAF_RS05965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05965;old_locus_tag=RAF_ORF1068
NC_012633.1	Protein Homology	CDS	1082306	1082653	.	-	0	ID=cds-WP_012720011.1;Parent=gene-RAF_RS05965;Dbxref=GenBank:WP_012720011.1;Name=WP_012720011.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392764.1;locus_tag=RAF_RS05965;product=palindromic element RPE1 domain-containing protein;protein_id=WP_012720011.1;transl_table=11
NC_012633.1	RefSeq	gene	1082660	1083013	.	-	.	ID=gene-RAF_RS05970;Name=RAF_RS05970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05970;old_locus_tag=RAF_ORF1069
NC_012633.1	Protein Homology	CDS	1082660	1083013	.	-	0	ID=cds-WP_012720012.1;Parent=gene-RAF_RS05970;Dbxref=GenBank:WP_012720012.1;Name=WP_012720012.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012720012.1;locus_tag=RAF_RS05970;product=helix-turn-helix domain-containing protein;protein_id=WP_012720012.1;transl_table=11
NC_012633.1	RefSeq	gene	1083017	1087768	.	-	.	ID=gene-RAF_RS05975;Name=RAF_RS05975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05975;old_locus_tag=RAF_ORF1070
NC_012633.1	Protein Homology	CDS	1083017	1087768	.	-	0	ID=cds-WP_012720013.1;Parent=gene-RAF_RS05975;Dbxref=GenBank:WP_012720013.1;Name=WP_012720013.1;Ontology_term=GO:0004352;gbkey=CDS;go_function=glutamate dehydrogenase (NAD+) activity|0004352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014411050.1;locus_tag=RAF_RS05975;product=NAD-glutamate dehydrogenase;protein_id=WP_012720013.1;transl_table=11
NC_012633.1	RefSeq	gene	1087853	1089190	.	+	.	ID=gene-RAF_RS05980;Name=mnmE;gbkey=Gene;gene=mnmE;gene_biotype=protein_coding;locus_tag=RAF_RS05980;old_locus_tag=RAF_ORF1071
NC_012633.1	Protein Homology	CDS	1087853	1089190	.	+	0	ID=cds-WP_004997443.1;Parent=gene-RAF_RS05980;Dbxref=GenBank:WP_004997443.1;Name=WP_004997443.1;Ontology_term=GO:0006400,GO:0003924,GO:0005515,GO:0005525;gbkey=CDS;gene=mnmE;go_function=GTPase activity|0003924||IEA,protein binding|0005515||IEA,GTP binding|0005525||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011476733.1;locus_tag=RAF_RS05980;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE;protein_id=WP_004997443.1;transl_table=11
NC_012633.1	RefSeq	gene	1089576	1090877	.	+	.	ID=gene-RAF_RS05985;Name=RAF_RS05985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05985;old_locus_tag=RAF_ORF1072
NC_012633.1	Protein Homology	CDS	1089576	1090877	.	+	0	ID=cds-WP_012720014.1;Parent=gene-RAF_RS05985;Dbxref=GenBank:WP_012720014.1;Name=WP_012720014.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997441.1;locus_tag=RAF_RS05985;product=DUF5460 family protein;protein_id=WP_012720014.1;transl_table=11
NC_012633.1	RefSeq	gene	1091767	1091913	.	-	.	ID=gene-RAF_RS10145;Name=RAF_RS10145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10145
NC_012633.1	GeneMarkS-2+	CDS	1091767	1091913	.	-	0	ID=cds-WP_146709393.1;Parent=gene-RAF_RS10145;Dbxref=GenBank:WP_146709393.1;Name=WP_146709393.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10145;product=MFS transporter;protein_id=WP_146709393.1;transl_table=11
NC_012633.1	RefSeq	gene	1092265	1092453	.	-	.	ID=gene-RAF_RS05995;Name=RAF_RS05995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05995
NC_012633.1	Protein Homology	CDS	1092265	1092453	.	-	0	ID=cds-WP_041471951.1;Parent=gene-RAF_RS05995;Dbxref=GenBank:WP_041471951.1;Name=WP_041471951.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977747.1;locus_tag=RAF_RS05995;product=hypothetical protein;protein_id=WP_041471951.1;transl_table=11
NC_012633.1	RefSeq	gene	1092471	1092635	.	-	.	ID=gene-RAF_RS10445;Name=RAF_RS10445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10445
NC_012633.1	Protein Homology	CDS	1092471	1092635	.	-	0	ID=cds-WP_327203424.1;Parent=gene-RAF_RS10445;Dbxref=GenBank:WP_327203424.1;Name=WP_327203424.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF019310.5;locus_tag=RAF_RS10445;product=hypothetical protein;protein_id=WP_327203424.1;transl_table=11
NC_012633.1	RefSeq	gene	1092649	1092942	.	-	.	ID=gene-RAF_RS10450;Name=RAF_RS10450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10450
NC_012633.1	Protein Homology	CDS	1092649	1092942	.	-	0	ID=cds-WP_268738929.1;Parent=gene-RAF_RS10450;Dbxref=GenBank:WP_268738929.1;Name=WP_268738929.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: protein motif:HMM:NF019310.5;locus_tag=RAF_RS10450;product=MFS transporter;protein_id=WP_268738929.1;transl_table=11
NC_012633.1	RefSeq	gene	1093360	1094391	.	+	.	ID=gene-RAF_RS06005;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=RAF_RS06005;old_locus_tag=RAF_ORF1077
NC_012633.1	Protein Homology	CDS	1093360	1094391	.	+	0	ID=cds-WP_004997434.1;Parent=gene-RAF_RS06005;Dbxref=GenBank:WP_004997434.1;Name=WP_004997434.1;Ontology_term=GO:0006281,GO:0003677,GO:0003697,GO:0005524,GO:0008094;gbkey=CDS;gene=recA;go_function=DNA binding|0003677||IEA,single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA,ATP-dependent activity%2C acting on DNA|0008094||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271523.1;locus_tag=RAF_RS06005;product=recombinase RecA;protein_id=WP_004997434.1;transl_table=11
NC_012633.1	RefSeq	gene	1094384	1095109	.	+	.	ID=gene-RAF_RS06010;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=RAF_RS06010;old_locus_tag=RAF_ORF1078
NC_012633.1	Protein Homology	CDS	1094384	1095109	.	+	0	ID=cds-WP_012720015.1;Parent=gene-RAF_RS06010;Dbxref=GenBank:WP_012720015.1;Name=WP_012720015.1;Ontology_term=GO:0016491;gbkey=CDS;gene=fabG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442627.1;locus_tag=RAF_RS06010;product=3-oxoacyl-ACP reductase FabG;protein_id=WP_012720015.1;transl_table=11
NC_012633.1	RefSeq	gene	1095273	1095533	.	+	.	ID=gene-RAF_RS06015;Name=acpP;gbkey=Gene;gene=acpP;gene_biotype=protein_coding;locus_tag=RAF_RS06015;old_locus_tag=RAF_ORF1079
NC_012633.1	Protein Homology	CDS	1095273	1095533	.	+	0	ID=cds-WP_008579292.1;Parent=gene-RAF_RS06015;Dbxref=GenBank:WP_008579292.1;Name=WP_008579292.1;Ontology_term=GO:0006633,GO:0000036;gbkey=CDS;gene=acpP;go_function=acyl carrier activity|0000036||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008579292.1;locus_tag=RAF_RS06015;product=acyl carrier protein;protein_id=WP_008579292.1;transl_table=11
NC_012633.1	RefSeq	gene	1095566	1096852	.	+	.	ID=gene-RAF_RS06020;Name=fabF;gbkey=Gene;gene=fabF;gene_biotype=protein_coding;locus_tag=RAF_RS06020;old_locus_tag=RAF_ORF1080
NC_012633.1	Protein Homology	CDS	1095566	1096852	.	+	0	ID=cds-WP_012720016.1;Parent=gene-RAF_RS06020;Dbxref=GenBank:WP_012720016.1;Name=WP_012720016.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabF;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997426.1;locus_tag=RAF_RS06020;product=beta-ketoacyl-ACP synthase II;protein_id=WP_012720016.1;transl_table=11
NC_012633.1	RefSeq	gene	1097134	1098915	.	+	.	ID=gene-RAF_RS06025;Name=RAF_RS06025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06025;old_locus_tag=RAF_ORF1081
NC_012633.1	Protein Homology	CDS	1097134	1098915	.	+	0	ID=cds-WP_012720017.1;Parent=gene-RAF_RS06025;Dbxref=GenBank:WP_012720017.1;Name=WP_012720017.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442630.1;locus_tag=RAF_RS06025;product=ABC-F family ATP-binding cassette domain-containing protein;protein_id=WP_012720017.1;transl_table=11
NC_012633.1	RefSeq	gene	1098992	1100062	.	+	.	ID=gene-RAF_RS06030;Name=RAF_RS06030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06030;old_locus_tag=RAF_ORF1082
NC_012633.1	Protein Homology	CDS	1098992	1100062	.	+	0	ID=cds-WP_041471952.1;Parent=gene-RAF_RS06030;Dbxref=GenBank:WP_041471952.1;Name=WP_041471952.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997421.1;locus_tag=RAF_RS06030;product=hypothetical protein;protein_id=WP_041471952.1;transl_table=11
NC_012633.1	RefSeq	gene	1100080	1100310	.	+	.	ID=gene-RAF_RS06035;Name=RAF_RS06035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06035
NC_012633.1	Protein Homology	CDS	1100080	1100310	.	+	0	ID=cds-WP_014411059.1;Parent=gene-RAF_RS06035;Dbxref=GenBank:WP_014411059.1;Name=WP_014411059.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442632.1;locus_tag=RAF_RS06035;product=hypothetical protein;protein_id=WP_014411059.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1100328	1101426	.	-	.	ID=gene-RAF_RS06040;Name=RAF_RS06040;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06040;old_locus_tag=RAF_ORF1083;pseudo=true
NC_012633.1	Protein Homology	CDS	1100328	1101426	.	-	0	ID=cds-RAF_RS06040;Parent=gene-RAF_RS06040;Note=frameshifted;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917140.1;locus_tag=RAF_RS06040;product=ATP-binding protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1101496	1102185	.	-	.	ID=gene-RAF_RS06045;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;locus_tag=RAF_RS06045;old_locus_tag=RAF_ORF1086
NC_012633.1	Protein Homology	CDS	1101496	1102185	.	-	0	ID=cds-WP_010977760.1;Parent=gene-RAF_RS06045;Dbxref=GenBank:WP_010977760.1;Name=WP_010977760.1;Ontology_term=GO:0006163,GO:0004385;gbkey=CDS;gene=gmk;go_function=guanylate kinase activity|0004385||IEA;go_process=purine nucleotide metabolic process|0006163||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977760.1;locus_tag=RAF_RS06045;product=guanylate kinase;protein_id=WP_010977760.1;transl_table=11
NC_012633.1	RefSeq	gene	1102326	1102655	.	-	.	ID=gene-RAF_RS06050;Name=RAF_RS06050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06050;old_locus_tag=RAF_ORF1087
NC_012633.1	Protein Homology	CDS	1102326	1102655	.	-	0	ID=cds-WP_012720019.1;Parent=gene-RAF_RS06050;Dbxref=GenBank:WP_012720019.1;Name=WP_012720019.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977761.1;locus_tag=RAF_RS06050;product=helix-turn-helix transcriptional regulator;protein_id=WP_012720019.1;transl_table=11
NC_012633.1	RefSeq	gene	1102910	1103749	.	-	.	ID=gene-RAF_RS06055;Name=mreC;gbkey=Gene;gene=mreC;gene_biotype=protein_coding;locus_tag=RAF_RS06055;old_locus_tag=RAF_ORF1088
NC_012633.1	Protein Homology	CDS	1102910	1103749	.	-	0	ID=cds-WP_012720020.1;Parent=gene-RAF_RS06055;Dbxref=GenBank:WP_012720020.1;Name=WP_012720020.1;Ontology_term=GO:0008360;gbkey=CDS;gene=mreC;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442634.1;locus_tag=RAF_RS06055;product=rod shape-determining protein MreC;protein_id=WP_012720020.1;transl_table=11
NC_012633.1	RefSeq	gene	1103752	1104792	.	-	.	ID=gene-RAF_RS06060;Name=RAF_RS06060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06060;old_locus_tag=RAF_ORF1089
NC_012633.1	Protein Homology	CDS	1103752	1104792	.	-	0	ID=cds-WP_004997403.1;Parent=gene-RAF_RS06060;Dbxref=GenBank:WP_004997403.1;Name=WP_004997403.1;Ontology_term=GO:0000902,GO:0008360,GO:0005524,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=ATP binding|0005524||IEA;go_process=cell morphogenesis|0000902||IEA,regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442635.1;locus_tag=RAF_RS06060;product=rod shape-determining protein;protein_id=WP_004997403.1;transl_table=11
NC_012633.1	RefSeq	gene	1105003	1106091	.	-	.	ID=gene-RAF_RS06065;Name=RAF_RS06065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06065;old_locus_tag=RAF_ORF1090
NC_012633.1	Protein Homology	CDS	1105003	1106091	.	-	0	ID=cds-WP_012720021.1;Parent=gene-RAF_RS06065;Dbxref=GenBank:WP_012720021.1;Name=WP_012720021.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409610.1;locus_tag=RAF_RS06065;product=LptF/LptG family permease;protein_id=WP_012720021.1;transl_table=11
NC_012633.1	RefSeq	gene	1106133	1106209	.	-	.	ID=gene-RAF_RS06070;Name=RAF_RS06070;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS06070;old_locus_tag=RAF_RNA34
NC_012633.1	tRNAscan-SE	tRNA	1106133	1106209	.	-	.	ID=rna-RAF_RS06070;Parent=gene-RAF_RS06070;anticodon=(pos:complement(1106173..1106175));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS06070;product=tRNA-Ile
NC_012633.1	tRNAscan-SE	exon	1106133	1106209	.	-	.	ID=exon-RAF_RS06070-1;Parent=rna-RAF_RS06070;anticodon=(pos:complement(1106173..1106175));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS06070;product=tRNA-Ile
NC_012633.1	RefSeq	gene	1106519	1106986	.	-	.	ID=gene-RAF_RS06075;Name=pal;gbkey=Gene;gene=pal;gene_biotype=protein_coding;locus_tag=RAF_RS06075;old_locus_tag=RAF_ORF1091
NC_012633.1	Protein Homology	CDS	1106519	1106986	.	-	0	ID=cds-WP_012720022.1;Parent=gene-RAF_RS06075;Dbxref=GenBank:WP_012720022.1;Name=WP_012720022.1;Ontology_term=GO:0009279;gbkey=CDS;gene=pal;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442637.1;locus_tag=RAF_RS06075;product=peptidoglycan-associated lipoprotein Pal;protein_id=WP_012720022.1;transl_table=11
NC_012633.1	RefSeq	gene	1107202	1107444	.	+	.	ID=gene-RAF_RS06080;Name=RAF_RS06080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06080;old_locus_tag=RAF_ORF1092
NC_012633.1	Protein Homology	CDS	1107202	1107444	.	+	0	ID=cds-WP_012720023.1;Parent=gene-RAF_RS06080;Dbxref=GenBank:WP_012720023.1;Name=WP_012720023.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977767.1;locus_tag=RAF_RS06080;product=palindromic element RPE1 domain-containing protein;protein_id=WP_012720023.1;transl_table=11
NC_012633.1	RefSeq	gene	1107459	1108415	.	-	.	ID=gene-RAF_RS06085;Name=RAF_RS06085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06085;old_locus_tag=RAF_ORF1093
NC_012633.1	Protein Homology	CDS	1107459	1108415	.	-	0	ID=cds-WP_010977768.1;Parent=gene-RAF_RS06085;Dbxref=GenBank:WP_010977768.1;Name=WP_010977768.1;Ontology_term=GO:0006633,GO:0004315,GO:0016746,GO:0033818;gbkey=CDS;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA,acyltransferase activity|0016746||IEA,beta-ketoacyl-acyl-carrier-protein synthase III activity|0033818||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271536.1;locus_tag=RAF_RS06085;product=beta-ketoacyl-ACP synthase III;protein_id=WP_010977768.1;transl_table=11
NC_012633.1	RefSeq	gene	1108423	1108623	.	-	.	ID=gene-RAF_RS06090;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=RAF_RS06090;old_locus_tag=RAF_ORF1094
NC_012633.1	Protein Homology	CDS	1108423	1108623	.	-	0	ID=cds-WP_004997395.1;Parent=gene-RAF_RS06090;Dbxref=GenBank:WP_004997395.1;Name=WP_004997395.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rpmF;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442639.1;locus_tag=RAF_RS06090;product=50S ribosomal protein L32;protein_id=WP_004997395.1;transl_table=11
NC_012633.1	RefSeq	gene	1108719	1109192	.	+	.	ID=gene-RAF_RS06095;Name=RAF_RS06095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06095;old_locus_tag=RAF_ORF1095
NC_012633.1	Protein Homology	CDS	1108719	1109192	.	+	0	ID=cds-WP_010977769.1;Parent=gene-RAF_RS06095;Dbxref=GenBank:WP_010977769.1;Name=WP_010977769.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442640.1;locus_tag=RAF_RS06095;product=outer membrane protein assembly factor BamE;protein_id=WP_010977769.1;transl_table=11
NC_012633.1	RefSeq	gene	1109396	1110307	.	+	.	ID=gene-RAF_RS06100;Name=ftsY;gbkey=Gene;gene=ftsY;gene_biotype=protein_coding;locus_tag=RAF_RS06100;old_locus_tag=RAF_ORF1096
NC_012633.1	Protein Homology	CDS	1109396	1110307	.	+	0	ID=cds-WP_012720024.1;Parent=gene-RAF_RS06100;Dbxref=GenBank:WP_012720024.1;Name=WP_012720024.1;Ontology_term=GO:0006614,GO:0009306,GO:0003924,GO:0005047;gbkey=CDS;gene=ftsY;go_function=GTPase activity|0003924||IEA,signal recognition particle binding|0005047||IEA;go_process=SRP-dependent cotranslational protein targeting to membrane|0006614||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191193.1;locus_tag=RAF_RS06100;product=signal recognition particle-docking protein FtsY;protein_id=WP_012720024.1;transl_table=11
NC_012633.1	RefSeq	gene	1110473	1113100	.	+	.	ID=gene-RAF_RS06105;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;locus_tag=RAF_RS06105;old_locus_tag=RAF_ORF1097
NC_012633.1	Protein Homology	CDS	1110473	1113100	.	+	0	ID=cds-WP_012720025.1;Parent=gene-RAF_RS06105;Dbxref=GenBank:WP_012720025.1;Name=WP_012720025.1;Ontology_term=GO:0006260,GO:0003887;gbkey=CDS;gene=polA;go_function=DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011477866.1;locus_tag=RAF_RS06105;product=DNA polymerase I;protein_id=WP_012720025.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1113280	1114411	.	+	.	ID=gene-RAF_RS06115;Name=metK;gbkey=Gene;gene=metK;gene_biotype=pseudogene;locus_tag=RAF_RS06115;old_locus_tag=RAF_ORF1098;pseudo=true
NC_012633.1	Protein Homology	CDS	1113280	1114411	.	+	0	ID=cds-RAF_RS06115;Parent=gene-RAF_RS06115;Note=frameshifted;Ontology_term=GO:0006556,GO:0004478,GO:0005524;gbkey=CDS;gene=metK;go_function=methionine adenosyltransferase activity|0004478||IEA,ATP binding|0005524||IEA;go_process=S-adenosylmethionine biosynthetic process|0006556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150070.1;locus_tag=RAF_RS06115;product=methionine adenosyltransferase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1114479	1114757	.	+	.	ID=gene-RAF_RS06120;Name=RAF_RS06120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06120
NC_012633.1	Protein Homology	CDS	1114479	1114757	.	+	0	ID=cds-WP_041471954.1;Parent=gene-RAF_RS06120;Dbxref=GenBank:WP_041471954.1;Name=WP_041471954.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770466.1;locus_tag=RAF_RS06120;product=hypothetical protein;protein_id=WP_041471954.1;transl_table=11
NC_012633.1	RefSeq	gene	1114796	1115056	.	+	.	ID=gene-RAF_RS06125;Name=RAF_RS06125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06125
NC_012633.1	Protein Homology	CDS	1114796	1115056	.	+	0	ID=cds-WP_041471955.1;Parent=gene-RAF_RS06125;Dbxref=GenBank:WP_041471955.1;Name=WP_041471955.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014365021.1;locus_tag=RAF_RS06125;product=hypothetical protein;protein_id=WP_041471955.1;transl_table=11
NC_012633.1	RefSeq	gene	1115229	1115438	.	+	.	ID=gene-RAF_RS06130;Name=RAF_RS06130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06130
NC_012633.1	Protein Homology	CDS	1115229	1115438	.	+	0	ID=cds-WP_041471956.1;Parent=gene-RAF_RS06130;Dbxref=GenBank:WP_041471956.1;Name=WP_041471956.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917128.1;locus_tag=RAF_RS06130;product=hypothetical protein;protein_id=WP_041471956.1;transl_table=11
NC_012633.1	RefSeq	gene	1115704	1119249	.	-	.	ID=gene-RAF_RS06135;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;locus_tag=RAF_RS06135;old_locus_tag=RAF_ORF1103
NC_012633.1	Protein Homology	CDS	1115704	1119249	.	-	0	ID=cds-WP_012720026.1;Parent=gene-RAF_RS06135;Dbxref=GenBank:WP_012720026.1;Name=WP_012720026.1;Ontology_term=GO:0006260,GO:0003676,GO:0008408;gbkey=CDS;gene=dnaE;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926585.1;locus_tag=RAF_RS06135;product=DNA polymerase III subunit alpha;protein_id=WP_012720026.1;transl_table=11
NC_012633.1	RefSeq	gene	1119366	1120664	.	-	.	ID=gene-RAF_RS06140;Name=RAF_RS06140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06140;old_locus_tag=RAF_ORF1104
NC_012633.1	Protein Homology	CDS	1119366	1120664	.	-	0	ID=cds-WP_012720027.1;Parent=gene-RAF_RS06140;Dbxref=GenBank:WP_012720027.1;Name=WP_012720027.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596947.1;locus_tag=RAF_RS06140;product=UDP-glucose dehydrogenase family protein;protein_id=WP_012720027.1;transl_table=11
NC_012633.1	RefSeq	gene	1120913	1123423	.	+	.	ID=gene-RAF_RS06145;Name=RAF_RS06145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06145;old_locus_tag=RAF_ORF1105
NC_012633.1	Protein Homology	CDS	1120913	1123423	.	+	0	ID=cds-WP_012720028.1;Parent=gene-RAF_RS06145;Dbxref=GenBank:WP_012720028.1;Name=WP_012720028.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014365396.1;locus_tag=RAF_RS06145;product=DUF3971 domain-containing protein;protein_id=WP_012720028.1;transl_table=11
NC_012633.1	RefSeq	gene	1123450	1125096	.	+	.	ID=gene-RAF_RS06150;Name=RAF_RS06150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06150;old_locus_tag=RAF_ORF1106
NC_012633.1	Protein Homology	CDS	1123450	1125096	.	+	0	ID=cds-WP_012720029.1;Parent=gene-RAF_RS06150;Dbxref=GenBank:WP_012720029.1;Name=WP_012720029.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273800.1;locus_tag=RAF_RS06150;product=MFS transporter;protein_id=WP_012720029.1;transl_table=11
NC_012633.1	RefSeq	gene	1125163	1125918	.	+	.	ID=gene-RAF_RS06155;Name=tatC;gbkey=Gene;gene=tatC;gene_biotype=protein_coding;locus_tag=RAF_RS06155;old_locus_tag=RAF_ORF1107
NC_012633.1	Protein Homology	CDS	1125163	1125918	.	+	0	ID=cds-WP_012720030.1;Parent=gene-RAF_RS06155;Dbxref=GenBank:WP_012720030.1;Name=WP_012720030.1;Ontology_term=GO:0015628,GO:0005886;gbkey=CDS;gene=tatC;go_component=plasma membrane|0005886||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409624.1;locus_tag=RAF_RS06155;product=twin-arginine translocase subunit TatC;protein_id=WP_012720030.1;transl_table=11
NC_012633.1	RefSeq	gene	1125896	1127173	.	+	.	ID=gene-RAF_RS06160;Name=serS;gbkey=Gene;gene=serS;gene_biotype=protein_coding;locus_tag=RAF_RS06160;old_locus_tag=RAF_ORF1108
NC_012633.1	Protein Homology	CDS	1125896	1127173	.	+	0	ID=cds-WP_012720031.1;Parent=gene-RAF_RS06160;Dbxref=GenBank:WP_012720031.1;Name=WP_012720031.1;Ontology_term=GO:0006434,GO:0000166,GO:0004828,GO:0005524;gbkey=CDS;gene=serS;go_function=nucleotide binding|0000166||IEA,serine-tRNA ligase activity|0004828||IEA,ATP binding|0005524||IEA;go_process=seryl-tRNA aminoacylation|0006434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271549.1;locus_tag=RAF_RS06160;product=serine--tRNA ligase;protein_id=WP_012720031.1;transl_table=11
NC_012633.1	RefSeq	gene	1127218	1127433	.	+	.	ID=gene-RAF_RS10665;Name=RAF_RS10665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10665
NC_012633.1	Protein Homology	CDS	1127218	1127433	.	+	0	ID=cds-WP_083762129.1;Parent=gene-RAF_RS10665;Dbxref=GenBank:WP_083762129.1;Name=WP_083762129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012262598.1;locus_tag=RAF_RS10665;product=palindromic element RPE5 domain-containing protein;protein_id=WP_083762129.1;transl_table=11
NC_012633.1	RefSeq	gene	1127518	1129950	.	+	.	ID=gene-RAF_RS06165;Name=RAF_RS06165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06165;old_locus_tag=RAF_ORF1109
NC_012633.1	Protein Homology	CDS	1127518	1129950	.	+	0	ID=cds-WP_012720032.1;Parent=gene-RAF_RS06165;Dbxref=GenBank:WP_012720032.1;Name=WP_012720032.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271550.1;locus_tag=RAF_RS06165;product=VirB4 family type IV secretion/conjugal transfer ATPase;protein_id=WP_012720032.1;transl_table=11
NC_012633.1	RefSeq	gene	1130086	1133574	.	+	.	ID=gene-RAF_RS06170;Name=RAF_RS06170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06170;old_locus_tag=RAF_ORF1110
NC_012633.1	Protein Homology	CDS	1130086	1133574	.	+	0	ID=cds-WP_012720033.1;Parent=gene-RAF_RS06170;Dbxref=GenBank:WP_012720033.1;Name=WP_012720033.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004599651.1;locus_tag=RAF_RS06170;product=hypothetical protein;protein_id=WP_012720033.1;transl_table=11
NC_012633.1	RefSeq	gene	1133579	1134484	.	+	.	ID=gene-RAF_RS06175;Name=RAF_RS06175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06175;old_locus_tag=RAF_ORF1111
NC_012633.1	Protein Homology	CDS	1133579	1134484	.	+	0	ID=cds-WP_012720034.1;Parent=gene-RAF_RS06175;Dbxref=GenBank:WP_012720034.1;Name=WP_012720034.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442656.1;locus_tag=RAF_RS06175;product=TerC/Alx family metal homeostasis membrane protein;protein_id=WP_012720034.1;transl_table=11
NC_012633.1	RefSeq	gene	1134528	1135241	.	+	.	ID=gene-RAF_RS06180;Name=RAF_RS06180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06180;old_locus_tag=RAF_ORF1112
NC_012633.1	Protein Homology	CDS	1134528	1135241	.	+	0	ID=cds-WP_012720035.1;Parent=gene-RAF_RS06180;Dbxref=GenBank:WP_012720035.1;Name=WP_012720035.1;Ontology_term=GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442657.1;locus_tag=RAF_RS06180;product=outer membrane protein;protein_id=WP_012720035.1;transl_table=11
NC_012633.1	RefSeq	gene	1135327	1136991	.	+	.	ID=gene-RAF_RS06185;Name=RAF_RS06185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06185;old_locus_tag=RAF_ORF1113
NC_012633.1	Protein Homology	CDS	1135327	1136991	.	+	0	ID=cds-WP_012720036.1;Parent=gene-RAF_RS06185;Dbxref=GenBank:WP_012720036.1;Name=WP_012720036.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010886371.1;locus_tag=RAF_RS06185;product=methyltransferase regulatory domain-containing protein;protein_id=WP_012720036.1;transl_table=11
NC_012633.1	RefSeq	gene	1137090	1137755	.	+	.	ID=gene-RAF_RS10160;Name=RAF_RS10160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10160;old_locus_tag=RAF_ORF1114
NC_012633.1	Protein Homology	CDS	1137090	1137755	.	+	0	ID=cds-WP_083762130.1;Parent=gene-RAF_RS10160;Dbxref=GenBank:WP_083762130.1;Name=WP_083762130.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977788.1;locus_tag=RAF_RS10160;product=helix-turn-helix domain-containing protein;protein_id=WP_083762130.1;transl_table=11
NC_012633.1	RefSeq	gene	1137788	1138405	.	+	.	ID=gene-RAF_RS06200;Name=RAF_RS06200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06200;old_locus_tag=RAF_ORF1115
NC_012633.1	Protein Homology	CDS	1137788	1138405	.	+	0	ID=cds-WP_012720038.1;Parent=gene-RAF_RS06200;Dbxref=GenBank:WP_012720038.1;Name=WP_012720038.1;Ontology_term=GO:0008137;gbkey=CDS;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011476781.1;locus_tag=RAF_RS06200;product=NADH-quinone oxidoreductase subunit J;protein_id=WP_012720038.1;transl_table=11
NC_012633.1	RefSeq	gene	1138398	1138712	.	+	.	ID=gene-RAF_RS06205;Name=nuoK;gbkey=Gene;gene=nuoK;gene_biotype=protein_coding;locus_tag=RAF_RS06205;old_locus_tag=RAF_ORF1116
NC_012633.1	Protein Homology	CDS	1138398	1138712	.	+	0	ID=cds-WP_041471958.1;Parent=gene-RAF_RS06205;Dbxref=GenBank:WP_041471958.1;Name=WP_041471958.1;Ontology_term=GO:0042773,GO:0016651;gbkey=CDS;gene=nuoK;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151334.1;locus_tag=RAF_RS06205;product=NADH-quinone oxidoreductase subunit NuoK;protein_id=WP_041471958.1;transl_table=11
NC_012633.1	RefSeq	gene	1138712	1140685	.	+	.	ID=gene-RAF_RS06210;Name=nuoL;gbkey=Gene;gene=nuoL;gene_biotype=protein_coding;locus_tag=RAF_RS06210;old_locus_tag=RAF_ORF1117
NC_012633.1	Protein Homology	CDS	1138712	1140685	.	+	0	ID=cds-WP_041471959.1;Parent=gene-RAF_RS06210;Dbxref=GenBank:WP_041471959.1;Name=WP_041471959.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoL;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409633.1;locus_tag=RAF_RS06210;product=NADH-quinone oxidoreductase subunit L;protein_id=WP_041471959.1;transl_table=11
NC_012633.1	RefSeq	gene	1140839	1142320	.	+	.	ID=gene-RAF_RS06215;Name=RAF_RS06215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06215;old_locus_tag=RAF_ORF1118
NC_012633.1	Protein Homology	CDS	1140839	1142320	.	+	0	ID=cds-WP_012720041.1;Parent=gene-RAF_RS06215;Dbxref=GenBank:WP_012720041.1;Name=WP_012720041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977792.1;locus_tag=RAF_RS06215;product=NADH-quinone oxidoreductase subunit M;protein_id=WP_012720041.1;transl_table=11
NC_012633.1	RefSeq	gene	1142734	1143309	.	+	.	ID=gene-RAF_RS06220;Name=ccmA;gbkey=Gene;gene=ccmA;gene_biotype=protein_coding;locus_tag=RAF_RS06220;old_locus_tag=RAF_ORF1119
NC_012633.1	Protein Homology	CDS	1142734	1143309	.	+	0	ID=cds-WP_016770480.1;Parent=gene-RAF_RS06220;Dbxref=GenBank:WP_016770480.1;Name=WP_016770480.1;Ontology_term=GO:0015886,GO:0017004,GO:0015439,GO:0022857,GO:0043190;gbkey=CDS;gene=ccmA;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type heme transporter activity|0015439||IEA,transmembrane transporter activity|0022857||IEA;go_process=heme transport|0015886||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151337.1;locus_tag=RAF_RS06220;product=heme ABC exporter ATP-binding protein CcmA;protein_id=WP_016770480.1;transl_table=11
NC_012633.1	RefSeq	gene	1143788	1144267	.	-	.	ID=gene-RAF_RS06225;Name=nuoI;gbkey=Gene;gene=nuoI;gene_biotype=protein_coding;locus_tag=RAF_RS06225;old_locus_tag=RAF_ORF1120
NC_012633.1	Protein Homology	CDS	1143788	1144267	.	-	0	ID=cds-WP_012720043.1;Parent=gene-RAF_RS06225;Dbxref=GenBank:WP_012720043.1;Name=WP_012720043.1;Ontology_term=GO:0016651,GO:0051539;gbkey=CDS;gene=nuoI;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977794.1;locus_tag=RAF_RS06225;product=NADH-quinone oxidoreductase subunit NuoI;protein_id=WP_012720043.1;transl_table=11
NC_012633.1	RefSeq	gene	1144454	1145473	.	-	.	ID=gene-RAF_RS06230;Name=nuoH;gbkey=Gene;gene=nuoH;gene_biotype=protein_coding;locus_tag=RAF_RS06230;old_locus_tag=RAF_ORF1121
NC_012633.1	Protein Homology	CDS	1144454	1145473	.	-	0	ID=cds-WP_012720044.1;Parent=gene-RAF_RS06230;Dbxref=GenBank:WP_012720044.1;Name=WP_012720044.1;Ontology_term=GO:0016651;gbkey=CDS;gene=nuoH;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011476798.1;locus_tag=RAF_RS06230;product=NADH-quinone oxidoreductase subunit NuoH;protein_id=WP_012720044.1;transl_table=11
NC_012633.1	RefSeq	gene	1145595	1147610	.	-	.	ID=gene-RAF_RS06235;Name=nuoG;gbkey=Gene;gene=nuoG;gene_biotype=protein_coding;locus_tag=RAF_RS06235;old_locus_tag=RAF_ORF1122
NC_012633.1	Protein Homology	CDS	1145595	1147610	.	-	0	ID=cds-WP_012720045.1;Parent=gene-RAF_RS06235;Dbxref=GenBank:WP_012720045.1;Name=WP_012720045.1;Ontology_term=GO:0006120,GO:0050136,GO:0051536;gbkey=CDS;gene=nuoG;go_function=NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=mitochondrial electron transport%2C NADH to ubiquinone|0006120||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041471777.1;locus_tag=RAF_RS06235;product=NADH-quinone oxidoreductase subunit NuoG;protein_id=WP_012720045.1;transl_table=11
NC_012633.1	RefSeq	gene	1147613	1147969	.	-	.	ID=gene-RAF_RS06240;Name=RAF_RS06240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06240;old_locus_tag=RAF_ORF1123
NC_012633.1	Protein Homology	CDS	1147613	1147969	.	-	0	ID=cds-WP_012720046.1;Parent=gene-RAF_RS06240;Dbxref=GenBank:WP_012720046.1;Name=WP_012720046.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150093.1;locus_tag=RAF_RS06240;product=DUF4870 family protein;protein_id=WP_012720046.1;transl_table=11
NC_012633.1	RefSeq	gene	1148138	1150774	.	-	.	ID=gene-RAF_RS06245;Name=acnA;gbkey=Gene;gene=acnA;gene_biotype=protein_coding;locus_tag=RAF_RS06245;old_locus_tag=RAF_ORF1124
NC_012633.1	Protein Homology	CDS	1148138	1150774	.	-	0	ID=cds-WP_012720047.1;Parent=gene-RAF_RS06245;Dbxref=GenBank:WP_012720047.1;Name=WP_012720047.1;Ontology_term=GO:0006099,GO:0003994;gbkey=CDS;gene=acnA;go_function=aconitate hydratase activity|0003994||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191217.1;locus_tag=RAF_RS06245;product=aconitate hydratase AcnA;protein_id=WP_012720047.1;transl_table=11
NC_012633.1	RefSeq	gene	1150956	1151294	.	-	.	ID=gene-RAF_RS06250;Name=RAF_RS06250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06250;old_locus_tag=RAF_ORF1125
NC_012633.1	Protein Homology	CDS	1150956	1151294	.	-	0	ID=cds-WP_012720048.1;Parent=gene-RAF_RS06250;Dbxref=GenBank:WP_012720048.1;Name=WP_012720048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151342.1;locus_tag=RAF_RS06250;product=F0F1 ATP synthase subunit epsilon;protein_id=WP_012720048.1;transl_table=11
NC_012633.1	RefSeq	gene	1151352	1152773	.	-	.	ID=gene-RAF_RS06255;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;locus_tag=RAF_RS06255;old_locus_tag=RAF_ORF1126
NC_012633.1	Protein Homology	CDS	1151352	1152773	.	-	0	ID=cds-WP_012720049.1;Parent=gene-RAF_RS06255;Dbxref=GenBank:WP_012720049.1;Name=WP_012720049.1;Ontology_term=GO:0015986,GO:0046933,GO:0045261;gbkey=CDS;gene=atpD;go_component=proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917108.1;locus_tag=RAF_RS06255;product=F0F1 ATP synthase subunit beta;protein_id=WP_012720049.1;transl_table=11
NC_012633.1	RefSeq	gene	1152946	1153917	.	-	.	ID=gene-RAF_RS06260;Name=atpG;gbkey=Gene;gene=atpG;gene_biotype=protein_coding;locus_tag=RAF_RS06260;old_locus_tag=RAF_ORF1127
NC_012633.1	Protein Homology	CDS	1152946	1153917	.	-	0	ID=cds-WP_012720050.1;Parent=gene-RAF_RS06260;Dbxref=GenBank:WP_012720050.1;Name=WP_012720050.1;Ontology_term=GO:0015986,GO:0046933,GO:0045261;gbkey=CDS;gene=atpG;go_component=proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442675.1;locus_tag=RAF_RS06260;product=ATP synthase F1 subunit gamma;protein_id=WP_012720050.1;transl_table=11
NC_012633.1	RefSeq	gene	1154050	1155582	.	-	.	ID=gene-RAF_RS06265;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;locus_tag=RAF_RS06265;old_locus_tag=RAF_ORF1128
NC_012633.1	Protein Homology	CDS	1154050	1155582	.	-	0	ID=cds-WP_041471960.1;Parent=gene-RAF_RS06265;Dbxref=GenBank:WP_041471960.1;Name=WP_041471960.1;Ontology_term=GO:0015986,GO:0046933,GO:0045261;gbkey=CDS;gene=atpA;go_component=proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012736839.1;locus_tag=RAF_RS06265;product=F0F1 ATP synthase subunit alpha;protein_id=WP_041471960.1;transl_table=11
NC_012633.1	RefSeq	gene	1155748	1156302	.	-	.	ID=gene-RAF_RS06270;Name=atpH;gbkey=Gene;gene=atpH;gene_biotype=protein_coding;locus_tag=RAF_RS06270;old_locus_tag=RAF_ORF1129
NC_012633.1	Protein Homology	CDS	1155748	1156302	.	-	0	ID=cds-WP_012720052.1;Parent=gene-RAF_RS06270;Dbxref=GenBank:WP_012720052.1;Name=WP_012720052.1;Ontology_term=GO:0015986,GO:0046933,GO:0045261;gbkey=CDS;gene=atpH;go_component=proton-transporting ATP synthase complex%2C catalytic core F(1)|0045261||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012720052.1;locus_tag=RAF_RS06270;product=ATP synthase F1 subunit delta;protein_id=WP_012720052.1;transl_table=11
NC_012633.1	RefSeq	gene	1156464	1157843	.	-	.	ID=gene-RAF_RS06275;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=RAF_RS06275;old_locus_tag=RAF_ORF1130
NC_012633.1	Protein Homology	CDS	1156464	1157843	.	-	0	ID=cds-WP_012720053.1;Parent=gene-RAF_RS06275;Dbxref=GenBank:WP_012720053.1;Name=WP_012720053.1;Ontology_term=GO:0004148,GO:0050660;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase activity|0004148||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442678.1;locus_tag=RAF_RS06275;product=dihydrolipoyl dehydrogenase;protein_id=WP_012720053.1;transl_table=11
NC_012633.1	RefSeq	gene	1157994	1158422	.	-	.	ID=gene-RAF_RS06280;Name=RAF_RS06280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06280;old_locus_tag=RAF_ORF1131
NC_012633.1	Protein Homology	CDS	1157994	1158422	.	-	0	ID=cds-WP_012151348.1;Parent=gene-RAF_RS06280;Dbxref=GenBank:WP_012151348.1;Name=WP_012151348.1;Ontology_term=GO:0008199,GO:0016722;gbkey=CDS;go_function=ferric iron binding|0008199||IEA,oxidoreductase activity%2C acting on metal ions|0016722||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151348.1;locus_tag=RAF_RS06280;product=Dps family protein;protein_id=WP_012151348.1;transl_table=11
NC_012633.1	RefSeq	gene	1158620	1159006	.	+	.	ID=gene-RAF_RS06285;Name=RAF_RS06285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06285
NC_012633.1	GeneMarkS-2+	CDS	1158620	1159006	.	+	0	ID=cds-WP_234943896.1;Parent=gene-RAF_RS06285;Dbxref=GenBank:WP_234943896.1;Name=WP_234943896.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS06285;product=hypothetical protein;protein_id=WP_234943896.1;transl_table=11
NC_012633.1	RefSeq	gene	1159174	1159377	.	+	.	ID=gene-RAF_RS06290;Name=RAF_RS06290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06290
NC_012633.1	Protein Homology	CDS	1159174	1159377	.	+	0	ID=cds-WP_016728372.1;Parent=gene-RAF_RS06290;Dbxref=GenBank:WP_016728372.1;Name=WP_016728372.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151350.1;locus_tag=RAF_RS06290;product=hypothetical protein;protein_id=WP_016728372.1;transl_table=11
NC_012633.1	RefSeq	gene	1159465	1159758	.	+	.	ID=gene-RAF_RS06295;Name=RAF_RS06295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06295
NC_012633.1	Protein Homology	CDS	1159465	1159758	.	+	0	ID=cds-WP_041471961.1;Parent=gene-RAF_RS06295;Dbxref=GenBank:WP_041471961.1;Name=WP_041471961.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945982.1;locus_tag=RAF_RS06295;product=hypothetical protein;protein_id=WP_041471961.1;transl_table=11
NC_012633.1	RefSeq	gene	1159839	1160114	.	-	.	ID=gene-RAF_RS10165;Name=RAF_RS10165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10165
NC_012633.1	Protein Homology	CDS	1159839	1160114	.	-	0	ID=cds-WP_234943897.1;Parent=gene-RAF_RS10165;Dbxref=GenBank:WP_234943897.1;Name=WP_234943897.1;Ontology_term=GO:0008658;gbkey=CDS;go_function=penicillin binding|0008658||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770489.1;locus_tag=RAF_RS10165;product=penicillin-binding transpeptidase domain-containing protein;protein_id=WP_234943897.1;transl_table=11
NC_012633.1	RefSeq	gene	1160280	1160552	.	-	.	ID=gene-RAF_RS10170;Name=RAF_RS10170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10170
NC_012633.1	Protein Homology	CDS	1160280	1160552	.	-	0	ID=cds-WP_041471963.1;Parent=gene-RAF_RS10170;Dbxref=GenBank:WP_041471963.1;Name=WP_041471963.1;Ontology_term=GO:0008658;gbkey=CDS;go_function=penicillin binding|0008658||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917101.1;locus_tag=RAF_RS10170;product=penicillin-binding transpeptidase domain-containing protein;protein_id=WP_041471963.1;transl_table=11
NC_012633.1	RefSeq	gene	1160714	1163086	.	-	.	ID=gene-RAF_RS06310;Name=RAF_RS06310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06310;old_locus_tag=RAF_ORF1136
NC_012633.1	Protein Homology	CDS	1160714	1163086	.	-	0	ID=cds-WP_012720054.1;Parent=gene-RAF_RS06310;Dbxref=GenBank:WP_012720054.1;Name=WP_012720054.1;Ontology_term=GO:0006508,GO:0009252,GO:0008658,GO:0008955,GO:0009002;gbkey=CDS;go_function=penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA,serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=proteolysis|0006508||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191225.1;locus_tag=RAF_RS06310;product=penicillin-binding protein 1A;protein_id=WP_012720054.1;transl_table=11
NC_012633.1	RefSeq	gene	1163090	1164427	.	-	.	ID=gene-RAF_RS06315;Name=miaB;gbkey=Gene;gene=miaB;gene_biotype=protein_coding;locus_tag=RAF_RS06315;old_locus_tag=RAF_ORF1137
NC_012633.1	Protein Homology	CDS	1163090	1164427	.	-	0	ID=cds-WP_012720055.1;Parent=gene-RAF_RS06315;Dbxref=GenBank:WP_012720055.1;Name=WP_012720055.1;Ontology_term=GO:0006400,GO:0016782,GO:0051539,GO:1904047;gbkey=CDS;gene=miaB;go_function=transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010886377.1;locus_tag=RAF_RS06315;product=tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB;protein_id=WP_012720055.1;transl_table=11
NC_012633.1	RefSeq	gene	1164848	1165123	.	-	.	ID=gene-RAF_RS08945;Name=RAF_RS08945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08945
NC_012633.1	Protein Homology	CDS	1164848	1165123	.	-	0	ID=cds-WP_148206976.1;Parent=gene-RAF_RS08945;Dbxref=GenBank:WP_148206976.1;Name=WP_148206976.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017020.5;locus_tag=RAF_RS08945;product=HEPN domain-containing protein;protein_id=WP_148206976.1;transl_table=11
NC_012633.1	RefSeq	gene	1165419	1165571	.	-	.	ID=gene-RAF_RS09530;Name=RAF_RS09530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09530
NC_012633.1	Protein Homology	CDS	1165419	1165571	.	-	0	ID=cds-WP_004997297.1;Parent=gene-RAF_RS09530;Dbxref=GenBank:WP_004997297.1;Name=WP_004997297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997297.1;locus_tag=RAF_RS09530;product=hypothetical protein;protein_id=WP_004997297.1;transl_table=11
NC_012633.1	RefSeq	gene	1165675	1165818	.	-	.	ID=gene-RAF_RS10175;Name=RAF_RS10175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10175
NC_012633.1	Protein Homology	CDS	1165675	1165818	.	-	0	ID=cds-WP_014014833.1;Parent=gene-RAF_RS10175;Dbxref=GenBank:WP_014014833.1;Name=WP_014014833.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917098.1;locus_tag=RAF_RS10175;product=hypothetical protein;protein_id=WP_014014833.1;transl_table=11
NC_012633.1	RefSeq	gene	1165860	1166009	.	-	.	ID=gene-RAF_RS10180;Name=RAF_RS10180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10180
NC_012633.1	Protein Homology	CDS	1165860	1166009	.	-	0	ID=cds-WP_234943898.1;Parent=gene-RAF_RS10180;Dbxref=GenBank:WP_234943898.1;Name=WP_234943898.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926608.1;locus_tag=RAF_RS10180;product=hypothetical protein;protein_id=WP_234943898.1;transl_table=11
NC_012633.1	RefSeq	gene	1166090	1166443	.	-	.	ID=gene-RAF_RS10185;Name=RAF_RS10185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10185;old_locus_tag=RAF_ORF1140
NC_012633.1	Protein Homology	CDS	1166090	1166443	.	-	0	ID=cds-WP_012720056.1;Parent=gene-RAF_RS10185;Dbxref=GenBank:WP_012720056.1;Name=WP_012720056.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024194.5;locus_tag=RAF_RS10185;product=PD-(D/E)XK nuclease family transposase;protein_id=WP_012720056.1;transl_table=11
NC_012633.1	RefSeq	gene	1166751	1167230	.	-	.	ID=gene-RAF_RS06335;Name=RAF_RS06335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06335;old_locus_tag=RAF_ORF1141
NC_012633.1	Protein Homology	CDS	1166751	1167230	.	-	0	ID=cds-WP_004997294.1;Parent=gene-RAF_RS06335;Dbxref=GenBank:WP_004997294.1;Name=WP_004997294.1;Ontology_term=GO:0005515,GO:0070064;gbkey=CDS;go_function=protein binding|0005515||IEA,proline-rich region binding|0070064||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392828.1;locus_tag=RAF_RS06335;product=SH3 domain-containing protein;protein_id=WP_004997294.1;transl_table=11
NC_012633.1	RefSeq	gene	1167223	1168950	.	-	.	ID=gene-RAF_RS06340;Name=RAF_RS06340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06340;old_locus_tag=RAF_ORF1142
NC_012633.1	Protein Homology	CDS	1167223	1168950	.	-	0	ID=cds-WP_012720058.1;Parent=gene-RAF_RS06340;Dbxref=GenBank:WP_012720058.1;Name=WP_012720058.1;Ontology_term=GO:0006812,GO:1902600,GO:0051139,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metal cation:proton antiporter activity|0051139||IEA;go_process=monoatomic cation transport|0006812||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014364245.1;locus_tag=RAF_RS06340;product=monovalent cation:proton antiporter-2 (CPA2) family protein;protein_id=WP_012720058.1;transl_table=11
NC_012633.1	RefSeq	gene	1168947	1169273	.	-	.	ID=gene-RAF_RS06345;Name=rsfS;gbkey=Gene;gene=rsfS;gene_biotype=protein_coding;locus_tag=RAF_RS06345;old_locus_tag=RAF_ORF1143
NC_012633.1	Protein Homology	CDS	1168947	1169273	.	-	0	ID=cds-WP_012720059.1;Parent=gene-RAF_RS06345;Dbxref=GenBank:WP_012720059.1;Name=WP_012720059.1;Ontology_term=GO:0017148,GO:0043022;gbkey=CDS;gene=rsfS;go_function=ribosome binding|0043022||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014412251.1;locus_tag=RAF_RS06345;product=ribosome silencing factor;protein_id=WP_012720059.1;transl_table=11
NC_012633.1	RefSeq	gene	1169429	1169668	.	+	.	ID=gene-RAF_RS06350;Name=RAF_RS06350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06350;old_locus_tag=RAF_ORF1144
NC_012633.1	Protein Homology	CDS	1169429	1169668	.	+	0	ID=cds-WP_012720060.1;Parent=gene-RAF_RS06350;Dbxref=GenBank:WP_012720060.1;Name=WP_012720060.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442688.1;locus_tag=RAF_RS06350;product=BolA/IbaG family iron-sulfur metabolism protein;protein_id=WP_012720060.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1169814	1170452	.	-	.	ID=gene-RAF_RS06355;Name=RAF_RS06355;end_range=1170452,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06355;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	1169814	1170452	.	-	0	ID=cds-RAF_RS06355;Parent=gene-RAF_RS06355;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0016020;end_range=1170452,.;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: protein motif:HMM:TIGR01414.1;locus_tag=RAF_RS06355;partial=true;product=autotransporter outer membrane beta-barrel domain-containing protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1170492	1171046	.	-	.	ID=gene-RAF_RS06360;Name=RAF_RS06360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06360
NC_012633.1	Protein Homology	CDS	1170492	1171046	.	-	0	ID=cds-WP_041471966.1;Parent=gene-RAF_RS06360;Dbxref=GenBank:WP_041471966.1;Name=WP_041471966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016770497.1;locus_tag=RAF_RS06360;product=hypothetical protein;protein_id=WP_041471966.1;transl_table=11
NC_012633.1	RefSeq	gene	1171255	1171434	.	+	.	ID=gene-RAF_RS06365;Name=RAF_RS06365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06365
NC_012633.1	Protein Homology	CDS	1171255	1171434	.	+	0	ID=cds-WP_041471967.1;Parent=gene-RAF_RS06365;Dbxref=GenBank:WP_041471967.1;Name=WP_041471967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926613.1;locus_tag=RAF_RS06365;product=hypothetical protein;protein_id=WP_041471967.1;transl_table=11
NC_012633.1	RefSeq	gene	1171661	1172155	.	-	.	ID=gene-RAF_RS06370;Name=RAF_RS06370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06370
NC_012633.1	GeneMarkS-2+	CDS	1171661	1172155	.	-	0	ID=cds-WP_234943899.1;Parent=gene-RAF_RS06370;Dbxref=GenBank:WP_234943899.1;Name=WP_234943899.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS06370;product=hypothetical protein;protein_id=WP_234943899.1;transl_table=11
NC_012633.1	RefSeq	gene	1172252	1172521	.	-	.	ID=gene-RAF_RS10190;Name=RAF_RS10190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10190
NC_012633.1	GeneMarkS-2+	CDS	1172252	1172521	.	-	0	ID=cds-WP_234943900.1;Parent=gene-RAF_RS10190;Dbxref=GenBank:WP_234943900.1;Name=WP_234943900.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10190;product=hypothetical protein;protein_id=WP_234943900.1;transl_table=11
NC_012633.1	RefSeq	gene	1172547	1173011	.	-	.	ID=gene-RAF_RS06380;Name=RAF_RS06380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06380
NC_012633.1	Protein Homology	CDS	1172547	1173011	.	-	0	ID=cds-WP_200858173.1;Parent=gene-RAF_RS06380;Dbxref=GenBank:WP_200858173.1;Name=WP_200858173.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977822.1;locus_tag=RAF_RS06380;product=hypothetical protein;protein_id=WP_200858173.1;transl_table=11
NC_012633.1	RefSeq	gene	1173021	1173305	.	-	.	ID=gene-RAF_RS06385;Name=RAF_RS06385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06385
NC_012633.1	Protein Homology	CDS	1173021	1173305	.	-	0	ID=cds-WP_041471968.1;Parent=gene-RAF_RS06385;Dbxref=GenBank:WP_041471968.1;Name=WP_041471968.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151368.1;locus_tag=RAF_RS06385;product=hypothetical protein;protein_id=WP_041471968.1;transl_table=11
NC_012633.1	RefSeq	gene	1173281	1173643	.	-	.	ID=gene-RAF_RS06390;Name=RAF_RS06390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06390
NC_012633.1	Protein Homology	CDS	1173281	1173643	.	-	0	ID=cds-WP_041471969.1;Parent=gene-RAF_RS06390;Dbxref=GenBank:WP_041471969.1;Name=WP_041471969.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977823.1;locus_tag=RAF_RS06390;product=hypothetical protein;protein_id=WP_041471969.1;transl_table=11
NC_012633.1	RefSeq	gene	1173603	1174673	.	-	.	ID=gene-RAF_RS06395;Name=RAF_RS06395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06395
NC_012633.1	GeneMarkS-2+	CDS	1173603	1174673	.	-	0	ID=cds-WP_234943901.1;Parent=gene-RAF_RS06395;Dbxref=GenBank:WP_234943901.1;Name=WP_234943901.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS06395;product=hypothetical protein;protein_id=WP_234943901.1;transl_table=11
NC_012633.1	RefSeq	gene	1174636	1175115	.	-	.	ID=gene-RAF_RS10195;Name=RAF_RS10195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10195
NC_012633.1	GeneMarkS-2+	CDS	1174636	1175115	.	-	0	ID=cds-WP_234943902.1;Parent=gene-RAF_RS10195;Dbxref=GenBank:WP_234943902.1;Name=WP_234943902.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS10195;product=hypothetical protein;protein_id=WP_234943902.1;transl_table=11
NC_012633.1	RefSeq	gene	1175096	1175353	.	-	.	ID=gene-RAF_RS06405;Name=RAF_RS06405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06405
NC_012633.1	GeneMarkS-2+	CDS	1175096	1175353	.	-	0	ID=cds-WP_041471970.1;Parent=gene-RAF_RS06405;Dbxref=GenBank:WP_041471970.1;Name=WP_041471970.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS06405;product=hypothetical protein;protein_id=WP_041471970.1;transl_table=11
NC_012633.1	RefSeq	gene	1175334	1175528	.	-	.	ID=gene-RAF_RS06410;Name=RAF_RS06410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06410
NC_012633.1	Protein Homology	CDS	1175334	1175528	.	-	0	ID=cds-WP_004997262.1;Parent=gene-RAF_RS06410;Dbxref=GenBank:WP_004997262.1;Name=WP_004997262.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997262.1;locus_tag=RAF_RS06410;product=hypothetical protein;protein_id=WP_004997262.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1176338	1176579	.	-	.	ID=gene-RAF_RS10670;Name=RAF_RS10670;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10670;pseudo=true
NC_012633.1	Protein Homology	CDS	1176338	1176579	.	-	0	ID=cds-RAF_RS10670;Parent=gene-RAF_RS10670;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977827.1;locus_tag=RAF_RS10670;product=cell surface protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1177258	1177334	.	+	.	ID=gene-RAF_RS06425;Name=RAF_RS06425;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS06425;old_locus_tag=RAF_RNA35
NC_012633.1	tRNAscan-SE	tRNA	1177258	1177334	.	+	.	ID=rna-RAF_RS06425;Parent=gene-RAF_RS06425;anticodon=(pos:1177292..1177294);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS06425;product=tRNA-Pro
NC_012633.1	tRNAscan-SE	exon	1177258	1177334	.	+	.	ID=exon-RAF_RS06425-1;Parent=rna-RAF_RS06425;anticodon=(pos:1177292..1177294);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS06425;product=tRNA-Pro
NC_012633.1	RefSeq	gene	1177352	1177567	.	+	.	ID=gene-RAF_RS06430;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;locus_tag=RAF_RS06430;old_locus_tag=RAF_ORF1156
NC_012633.1	Protein Homology	CDS	1177352	1177567	.	+	0	ID=cds-WP_010977828.1;Parent=gene-RAF_RS06430;Dbxref=GenBank:WP_010977828.1;Name=WP_010977828.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014366118.1;locus_tag=RAF_RS06430;product=translation initiation factor IF-1;protein_id=WP_010977828.1;transl_table=11
NC_012633.1	RefSeq	gene	1177579	1178226	.	+	.	ID=gene-RAF_RS06435;Name=RAF_RS06435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06435;old_locus_tag=RAF_ORF1157
NC_012633.1	Protein Homology	CDS	1177579	1178226	.	+	0	ID=cds-WP_012720062.1;Parent=gene-RAF_RS06435;Dbxref=GenBank:WP_012720062.1;Name=WP_012720062.1;Ontology_term=GO:0009117,GO:0009146,GO:0000166,GO:0047429;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,nucleoside triphosphate diphosphatase activity|0047429||IEA;go_process=nucleotide metabolic process|0009117||IEA,purine nucleoside triphosphate catabolic process|0009146||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977829.1;locus_tag=RAF_RS06435;product=Maf family protein;protein_id=WP_012720062.1;transl_table=11
NC_012633.1	RefSeq	gene	1178360	1178791	.	-	.	ID=gene-RAF_RS06440;Name=dksA;gbkey=Gene;gene=dksA;gene_biotype=protein_coding;locus_tag=RAF_RS06440;old_locus_tag=RAF_ORF1158
NC_012633.1	Protein Homology	CDS	1178360	1178791	.	-	0	ID=cds-WP_012720063.1;Parent=gene-RAF_RS06440;Dbxref=GenBank:WP_012720063.1;Name=WP_012720063.1;Ontology_term=GO:0006355,GO:0008270,GO:0019899;gbkey=CDS;gene=dksA;go_function=zinc ion binding|0008270||IEA,enzyme binding|0019899||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409109.1;locus_tag=RAF_RS06440;product=RNA polymerase-binding protein DksA;protein_id=WP_012720063.1;transl_table=11
NC_012633.1	RefSeq	gene	1178959	1179876	.	-	.	ID=gene-RAF_RS06445;Name=RAF_RS06445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06445;old_locus_tag=RAF_ORF1159
NC_012633.1	Protein Homology	CDS	1178959	1179876	.	-	0	ID=cds-WP_012720064.1;Parent=gene-RAF_RS06445;Dbxref=GenBank:WP_012720064.1;Name=WP_012720064.1;Ontology_term=GO:0006313,GO:0007059,GO:0051301,GO:0003677,GO:0009037;gbkey=CDS;go_function=DNA binding|0003677||IEA,tyrosine-based site-specific recombinase activity|0009037||IEA;go_process=DNA transposition|0006313||IEA,chromosome segregation|0007059||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150119.1;locus_tag=RAF_RS06445;product=tyrosine recombinase XerC;protein_id=WP_012720064.1;transl_table=11
NC_012633.1	RefSeq	gene	1180058	1180327	.	+	.	ID=gene-RAF_RS06450;Name=RAF_RS06450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06450;old_locus_tag=RAF_ORF1160
NC_012633.1	Protein Homology	CDS	1180058	1180327	.	+	0	ID=cds-WP_234943903.1;Parent=gene-RAF_RS06450;Dbxref=GenBank:WP_234943903.1;Name=WP_234943903.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917078.1;locus_tag=RAF_RS06450;product=phasin family protein;protein_id=WP_234943903.1;transl_table=11
NC_012633.1	RefSeq	gene	1180375	1180977	.	-	.	ID=gene-RAF_RS06455;Name=pld;gbkey=Gene;gene=pld;gene_biotype=protein_coding;locus_tag=RAF_RS06455;old_locus_tag=RAF_ORF1161
NC_012633.1	Protein Homology	CDS	1180375	1180977	.	-	0	ID=cds-WP_012720066.1;Parent=gene-RAF_RS06455;Dbxref=GenBank:WP_012720066.1;Name=WP_012720066.1;gbkey=CDS;gene=pld;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917077.1;locus_tag=RAF_RS06455;product=phospholipase D;protein_id=WP_012720066.1;transl_table=11
NC_012633.1	RefSeq	gene	1181127	1181273	.	-	.	ID=gene-RAF_RS09535;Name=RAF_RS09535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09535
NC_012633.1	Protein Homology	CDS	1181127	1181273	.	-	0	ID=cds-WP_041472052.1;Parent=gene-RAF_RS09535;Dbxref=GenBank:WP_041472052.1;Name=WP_041472052.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014363312.1;locus_tag=RAF_RS09535;product=hypothetical protein;protein_id=WP_041472052.1;transl_table=11
NC_012633.1	RefSeq	gene	1181755	1183233	.	-	.	ID=gene-RAF_RS06470;Name=RAF_RS06470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06470;old_locus_tag=RAF_ORF1164
NC_012633.1	Protein Homology	CDS	1181755	1183233	.	-	0	ID=cds-WP_012720067.1;Parent=gene-RAF_RS06470;Dbxref=GenBank:WP_012720067.1;Name=WP_012720067.1;Ontology_term=GO:0016831,GO:0046872;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409666.1;locus_tag=RAF_RS06470;product=UbiD family decarboxylase;protein_id=WP_012720067.1;transl_table=11
NC_012633.1	RefSeq	gene	1183387	1184961	.	-	.	ID=gene-RAF_RS06475;Name=RAF_RS06475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06475;old_locus_tag=RAF_ORF1165
NC_012633.1	Protein Homology	CDS	1183387	1184961	.	-	0	ID=cds-WP_012720068.1;Parent=gene-RAF_RS06475;Dbxref=GenBank:WP_012720068.1;Name=WP_012720068.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917074.1;locus_tag=RAF_RS06475;product=SurA N-terminal domain-containing protein;protein_id=WP_012720068.1;transl_table=11
NC_012633.1	RefSeq	gene	1185155	1191436	.	-	.	ID=gene-RAF_RS06480;Name=RAF_RS06480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06480;old_locus_tag=RAF_ORF1166
NC_012633.1	Protein Homology	CDS	1185155	1191436	.	-	0	ID=cds-WP_012720069.1;Parent=gene-RAF_RS06480;Dbxref=GenBank:WP_012720069.1;Name=WP_012720069.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014363315.1;locus_tag=RAF_RS06480;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_012720069.1;transl_table=11
NC_012633.1	RefSeq	gene	1191691	1191900	.	-	.	ID=gene-RAF_RS08380;Name=RAF_RS08380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08380
NC_012633.1	Protein Homology	CDS	1191691	1191900	.	-	0	ID=cds-WP_327203450.1;Parent=gene-RAF_RS08380;Dbxref=GenBank:WP_327203450.1;Name=WP_327203450.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024206.5;locus_tag=RAF_RS08380;product=ankyrin repeat domain-containing protein;protein_id=WP_327203450.1;transl_table=11
NC_012633.1	RefSeq	gene	1192074	1194308	.	-	.	ID=gene-RAF_RS06490;Name=RAF_RS06490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06490;old_locus_tag=RAF_ORF1167
NC_012633.1	Protein Homology	CDS	1192074	1194308	.	-	0	ID=cds-WP_012720070.1;Parent=gene-RAF_RS06490;Dbxref=GenBank:WP_012720070.1;Name=WP_012720070.1;Ontology_term=GO:0007059,GO:0051301,GO:0003677,GO:0005524,GO:0015616;gbkey=CDS;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,DNA translocase activity|0015616||IEA;go_process=chromosome segregation|0007059||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011476850.1;locus_tag=RAF_RS06490;product=DNA translocase FtsK;protein_id=WP_012720070.1;transl_table=11
NC_012633.1	RefSeq	gene	1194477	1195337	.	-	.	ID=gene-RAF_RS06495;Name=RAF_RS06495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06495;old_locus_tag=RAF_ORF1168
NC_012633.1	Protein Homology	CDS	1194477	1195337	.	-	0	ID=cds-WP_327203426.1;Parent=gene-RAF_RS06495;Dbxref=GenBank:WP_327203426.1;Name=WP_327203426.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: protein motif:HMM:NF013884.5;locus_tag=RAF_RS06495;product=acyltransferase family protein;protein_id=WP_327203426.1;transl_table=11
NC_012633.1	RefSeq	gene	1195502	1196281	.	+	.	ID=gene-RAF_RS06500;Name=map;gbkey=Gene;gene=map;gene_biotype=protein_coding;locus_tag=RAF_RS06500;old_locus_tag=RAF_ORF1169
NC_012633.1	Protein Homology	CDS	1195502	1196281	.	+	0	ID=cds-WP_010977838.1;Parent=gene-RAF_RS06500;Dbxref=GenBank:WP_010977838.1;Name=WP_010977838.1;Ontology_term=GO:0006508,GO:0070006;gbkey=CDS;gene=map;go_function=metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442714.1;locus_tag=RAF_RS06500;product=type I methionyl aminopeptidase;protein_id=WP_010977838.1;transl_table=11
NC_012633.1	RefSeq	gene	1196531	1196842	.	+	.	ID=gene-RAF_RS06505;Name=RAF_RS06505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06505
NC_012633.1	Protein Homology	CDS	1196531	1196842	.	+	0	ID=cds-WP_014411118.1;Parent=gene-RAF_RS06505;Dbxref=GenBank:WP_014411118.1;Name=WP_014411118.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016830995.1;locus_tag=RAF_RS06505;product=UPF0758 domain-containing protein;protein_id=WP_014411118.1;transl_table=11
NC_012633.1	RefSeq	gene	1196847	1197215	.	+	.	ID=gene-RAF_RS06510;Name=RAF_RS06510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06510
NC_012633.1	Protein Homology	CDS	1196847	1197215	.	+	0	ID=cds-WP_041471972.1;Parent=gene-RAF_RS06510;Dbxref=GenBank:WP_041471972.1;Name=WP_041471972.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014363320.1;locus_tag=RAF_RS06510;product=RadC family protein;protein_id=WP_041471972.1;transl_table=11
NC_012633.1	RefSeq	gene	1197202	1198185	.	+	.	ID=gene-RAF_RS06515;Name=RAF_RS06515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06515;old_locus_tag=RAF_ORF1172
NC_012633.1	Protein Homology	CDS	1197202	1198185	.	+	0	ID=cds-WP_012720072.1;Parent=gene-RAF_RS06515;Dbxref=GenBank:WP_012720072.1;Name=WP_012720072.1;Ontology_term=GO:0009252,GO:0016780,GO:0046872;gbkey=CDS;go_function=phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA,metal ion binding|0046872||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442717.1;locus_tag=RAF_RS06515;product=MraY family glycosyltransferase;protein_id=WP_012720072.1;transl_table=11
NC_012633.1	RefSeq	gene	1198182	1198505	.	+	.	ID=gene-RAF_RS06520;Name=RAF_RS06520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06520;old_locus_tag=RAF_ORF1173
NC_012633.1	Protein Homology	CDS	1198182	1198505	.	+	0	ID=cds-WP_004997222.1;Parent=gene-RAF_RS06520;Dbxref=GenBank:WP_004997222.1;Name=WP_004997222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409121.1;locus_tag=RAF_RS06520;product=DUF721 domain-containing protein;protein_id=WP_004997222.1;transl_table=11
NC_012633.1	RefSeq	gene	1198893	1199630	.	-	.	ID=gene-RAF_RS06525;Name=RAF_RS06525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06525;old_locus_tag=RAF_ORF1174
NC_012633.1	Protein Homology	CDS	1198893	1199630	.	-	0	ID=cds-WP_012720073.1;Parent=gene-RAF_RS06525;Dbxref=GenBank:WP_012720073.1;Name=WP_012720073.1;Ontology_term=GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997220.1;locus_tag=RAF_RS06525;product=outer membrane protein;protein_id=WP_012720073.1;transl_table=11
NC_012633.1	RefSeq	gene	1199877	1200551	.	-	.	ID=gene-RAF_RS06530;Name=RAF_RS06530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06530;old_locus_tag=RAF_ORF1175
NC_012633.1	Protein Homology	CDS	1199877	1200551	.	-	0	ID=cds-WP_041471973.1;Parent=gene-RAF_RS06530;Dbxref=GenBank:WP_041471973.1;Name=WP_041471973.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596835.1;locus_tag=RAF_RS06530;product=outer membrane beta-barrel protein;protein_id=WP_041471973.1;transl_table=11
NC_012633.1	RefSeq	gene	1200844	1201194	.	-	.	ID=gene-RAF_RS06535;Name=RAF_RS06535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06535;old_locus_tag=RAF_ORF1176
NC_012633.1	Protein Homology	CDS	1200844	1201194	.	-	0	ID=cds-WP_012720075.1;Parent=gene-RAF_RS06535;Dbxref=GenBank:WP_012720075.1;Name=WP_012720075.1;Ontology_term=GO:0009055,GO:0046872,GO:0051536;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,metal ion binding|0046872||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977845.1;locus_tag=RAF_RS06535;product=ferredoxin family protein;protein_id=WP_012720075.1;transl_table=11
NC_012633.1	RefSeq	gene	1201199	1201891	.	-	.	ID=gene-RAF_RS06540;Name=RAF_RS06540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06540;old_locus_tag=RAF_ORF1177
NC_012633.1	Protein Homology	CDS	1201199	1201891	.	-	0	ID=cds-WP_012720076.1;Parent=gene-RAF_RS06540;Dbxref=GenBank:WP_012720076.1;Name=WP_012720076.1;Ontology_term=GO:0017004,GO:0015232,GO:0020037,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=heme transmembrane transporter activity|0015232||IEA,heme binding|0020037||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151393.1;locus_tag=RAF_RS06540;product=heme ABC transporter permease;protein_id=WP_012720076.1;transl_table=11
NC_012633.1	RefSeq	gene	1201906	1202412	.	-	.	ID=gene-RAF_RS06545;Name=RAF_RS06545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06545;old_locus_tag=RAF_ORF1178
NC_012633.1	Protein Homology	CDS	1201906	1202412	.	-	0	ID=cds-WP_004997207.1;Parent=gene-RAF_RS06545;Dbxref=GenBank:WP_004997207.1;Name=WP_004997207.1;Ontology_term=GO:0009116,GO:0008270,GO:0019239;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,deaminase activity|0019239||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442722.1;locus_tag=RAF_RS06545;product=nucleoside deaminase;protein_id=WP_004997207.1;transl_table=11
NC_012633.1	RefSeq	gene	1202393	1203298	.	-	.	ID=gene-RAF_RS06550;Name=RAF_RS06550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06550;old_locus_tag=RAF_ORF1179
NC_012633.1	Protein Homology	CDS	1202393	1203298	.	-	0	ID=cds-WP_041471974.1;Parent=gene-RAF_RS06550;Dbxref=GenBank:WP_041471974.1;Name=WP_041471974.1;Ontology_term=GO:0006812,GO:0008324,GO:0015562,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA,efflux transmembrane transporter activity|0015562||IEA;go_process=monoatomic cation transport|0006812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273843.1;locus_tag=RAF_RS06550;product=cation diffusion facilitator family transporter;protein_id=WP_041471974.1;transl_table=11
NC_012633.1	RefSeq	gene	1203480	1203959	.	+	.	ID=gene-RAF_RS06555;Name=RAF_RS06555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06555;old_locus_tag=RAF_ORF1180
NC_012633.1	Protein Homology	CDS	1203480	1203959	.	+	0	ID=cds-WP_012720078.1;Parent=gene-RAF_RS06555;Dbxref=GenBank:WP_012720078.1;Name=WP_012720078.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191250.1;locus_tag=RAF_RS06555;product=RT0821/Lpp0805 family surface protein;protein_id=WP_012720078.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1203958	1204044	.	-	.	ID=gene-RAF_RS10795;Name=RAF_RS10795;end_range=1204044,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10795;partial=true;pseudo=true;start_range=.,1203958
NC_012633.1	Protein Homology	CDS	1203958	1204044	.	-	0	ID=cds-RAF_RS10795;Parent=gene-RAF_RS10795;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1204044,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442852.1;locus_tag=RAF_RS10795;partial=true;product=lytic transglycosylase domain-containing protein;pseudo=true;start_range=.,1203958;transl_table=11
NC_012633.1	RefSeq	gene	1204090	1204554	.	+	.	ID=gene-RAF_RS06560;Name=RAF_RS06560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06560;old_locus_tag=RAF_ORF1181
NC_012633.1	Protein Homology	CDS	1204090	1204554	.	+	0	ID=cds-WP_012720079.1;Parent=gene-RAF_RS06560;Dbxref=GenBank:WP_012720079.1;Name=WP_012720079.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977848.1;locus_tag=RAF_RS06560;product=YbhB/YbcL family Raf kinase inhibitor-like protein;protein_id=WP_012720079.1;transl_table=11
NC_012633.1	RefSeq	gene	1204694	1205395	.	+	.	ID=gene-RAF_RS06565;Name=RAF_RS06565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06565;old_locus_tag=RAF_ORF1182
NC_012633.1	Protein Homology	CDS	1204694	1205395	.	+	0	ID=cds-WP_012720080.1;Parent=gene-RAF_RS06565;Dbxref=GenBank:WP_012720080.1;Name=WP_012720080.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011478072.1;locus_tag=RAF_RS06565;product=metal ABC transporter ATP-binding protein;protein_id=WP_012720080.1;transl_table=11
NC_012633.1	RefSeq	gene	1205492	1205836	.	-	.	ID=gene-RAF_RS06570;Name=RAF_RS06570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06570
NC_012633.1	Protein Homology	CDS	1205492	1205836	.	-	0	ID=cds-WP_041471975.1;Parent=gene-RAF_RS06570;Dbxref=GenBank:WP_041471975.1;Name=WP_041471975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014411127.1;locus_tag=RAF_RS06570;product=hypothetical protein;protein_id=WP_041471975.1;transl_table=11
NC_012633.1	RefSeq	gene	1205985	1206242	.	-	.	ID=gene-RAF_RS06575;Name=RAF_RS06575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06575
NC_012633.1	Protein Homology	CDS	1205985	1206242	.	-	0	ID=cds-WP_234943904.1;Parent=gene-RAF_RS06575;Dbxref=GenBank:WP_234943904.1;Name=WP_234943904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442728.1;locus_tag=RAF_RS06575;product=hypothetical protein;protein_id=WP_234943904.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1206202	1206491	.	-	.	ID=gene-RAF_RS06580;Name=RAF_RS06580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06580;pseudo=true
NC_012633.1	Protein Homology	CDS	1206202	1206491	.	-	0	ID=cds-RAF_RS06580;Parent=gene-RAF_RS06580;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014411128.1;locus_tag=RAF_RS06580;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1206660	1207010	.	-	.	ID=gene-RAF_RS06585;Name=RAF_RS06585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06585;old_locus_tag=RAF_ORF1185
NC_012633.1	Protein Homology	CDS	1206660	1207010	.	-	0	ID=cds-WP_014273847.1;Parent=gene-RAF_RS06585;Dbxref=GenBank:WP_014273847.1;Name=WP_014273847.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273847.1;locus_tag=RAF_RS06585;product=hypothetical protein;protein_id=WP_014273847.1;transl_table=11
NC_012633.1	RefSeq	gene	1207147	1207341	.	-	.	ID=gene-RAF_RS06590;Name=RAF_RS06590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06590
NC_012633.1	Protein Homology	CDS	1207147	1207341	.	-	0	ID=cds-WP_004997188.1;Parent=gene-RAF_RS06590;Dbxref=GenBank:WP_004997188.1;Name=WP_004997188.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977853.1;locus_tag=RAF_RS06590;product=hypothetical protein;protein_id=WP_004997188.1;transl_table=11
NC_012633.1	RefSeq	gene	1207601	1210462	.	-	.	ID=gene-RAF_RS06595;Name=uvrA;gbkey=Gene;gene=uvrA;gene_biotype=protein_coding;locus_tag=RAF_RS06595;old_locus_tag=RAF_ORF1186
NC_012633.1	Protein Homology	CDS	1207601	1210462	.	-	0	ID=cds-WP_041471976.1;Parent=gene-RAF_RS06595;Dbxref=GenBank:WP_041471976.1;Name=WP_041471976.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887;gbkey=CDS;gene=uvrA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191252.1;locus_tag=RAF_RS06595;product=excinuclease ABC subunit UvrA;protein_id=WP_041471976.1;transl_table=11
NC_012633.1	RefSeq	gene	1210571	1211029	.	+	.	ID=gene-RAF_RS06600;Name=RAF_RS06600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06600;old_locus_tag=RAF_ORF1187
NC_012633.1	Protein Homology	CDS	1210571	1211029	.	+	0	ID=cds-WP_010977855.1;Parent=gene-RAF_RS06600;Dbxref=GenBank:WP_010977855.1;Name=WP_010977855.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271625.1;locus_tag=RAF_RS06600;product=single-stranded DNA-binding protein;protein_id=WP_010977855.1;transl_table=11
NC_012633.1	RefSeq	gene	1211041	1211871	.	+	.	ID=gene-RAF_RS06605;Name=RAF_RS06605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06605;old_locus_tag=RAF_ORF1188
NC_012633.1	Protein Homology	CDS	1211041	1211871	.	+	0	ID=cds-WP_012720082.1;Parent=gene-RAF_RS06605;Dbxref=GenBank:WP_012720082.1;Name=WP_012720082.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014014872.1;locus_tag=RAF_RS06605;product=alpha/beta hydrolase family protein;protein_id=WP_012720082.1;transl_table=11
NC_012633.1	RefSeq	gene	1211912	1212205	.	+	.	ID=gene-RAF_RS06610;Name=RAF_RS06610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06610;old_locus_tag=RAF_ORF1189
NC_012633.1	Protein Homology	CDS	1211912	1212205	.	+	0	ID=cds-WP_012720083.1;Parent=gene-RAF_RS06610;Dbxref=GenBank:WP_012720083.1;Name=WP_012720083.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010420983.1;locus_tag=RAF_RS06610;product=hypothetical protein;protein_id=WP_012720083.1;transl_table=11
NC_012633.1	RefSeq	gene	1212296	1212502	.	-	.	ID=gene-RAF_RS06615;Name=RAF_RS06615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06615;old_locus_tag=RAF_ORF1190
NC_012633.1	Protein Homology	CDS	1212296	1212502	.	-	0	ID=cds-WP_012720084.1;Parent=gene-RAF_RS06615;Dbxref=GenBank:WP_012720084.1;Name=WP_012720084.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014391616.1;locus_tag=RAF_RS06615;product=lysozyme;protein_id=WP_012720084.1;transl_table=11
NC_012633.1	RefSeq	gene	1212882	1213085	.	-	.	ID=gene-RAF_RS06620;Name=RAF_RS06620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06620
NC_012633.1	Protein Homology	CDS	1212882	1213085	.	-	0	ID=cds-WP_041471977.1;Parent=gene-RAF_RS06620;Dbxref=GenBank:WP_041471977.1;Name=WP_041471977.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997182.1;locus_tag=RAF_RS06620;product=hypothetical protein;protein_id=WP_041471977.1;transl_table=11
NC_012633.1	RefSeq	gene	1213368	1213444	.	-	.	ID=gene-RAF_RS06625;Name=RAF_RS06625;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS06625;old_locus_tag=RAF_RNA36
NC_012633.1	tRNAscan-SE	tRNA	1213368	1213444	.	-	.	ID=rna-RAF_RS06625;Parent=gene-RAF_RS06625;anticodon=(pos:complement(1213408..1213410));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS06625;product=tRNA-Arg
NC_012633.1	tRNAscan-SE	exon	1213368	1213444	.	-	.	ID=exon-RAF_RS06625-1;Parent=rna-RAF_RS06625;anticodon=(pos:complement(1213408..1213410));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS06625;product=tRNA-Arg
NC_012633.1	RefSeq	gene	1213541	1213858	.	+	.	ID=gene-RAF_RS06630;Name=RAF_RS06630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06630;old_locus_tag=RAF_ORF1191
NC_012633.1	Protein Homology	CDS	1213541	1213858	.	+	0	ID=cds-WP_004997180.1;Parent=gene-RAF_RS06630;Dbxref=GenBank:WP_004997180.1;Name=WP_004997180.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191255.1;locus_tag=RAF_RS06630;product=DUF167 domain-containing protein;protein_id=WP_004997180.1;transl_table=11
NC_012633.1	RefSeq	gene	1214002	1215867	.	+	.	ID=gene-RAF_RS06635;Name=htpG;gbkey=Gene;gene=htpG;gene_biotype=protein_coding;locus_tag=RAF_RS06635;old_locus_tag=RAF_ORF1192
NC_012633.1	Protein Homology	CDS	1214002	1215867	.	+	0	ID=cds-WP_012720085.1;Parent=gene-RAF_RS06635;Dbxref=GenBank:WP_012720085.1;Name=WP_012720085.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887,GO:0051082;gbkey=CDS;gene=htpG;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151911.1;locus_tag=RAF_RS06635;product=molecular chaperone HtpG;protein_id=WP_012720085.1;transl_table=11
NC_012633.1	RefSeq	gene	1216046	1217290	.	+	.	ID=gene-RAF_RS06640;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;locus_tag=RAF_RS06640;old_locus_tag=RAF_ORF1193
NC_012633.1	Protein Homology	CDS	1216046	1217290	.	+	0	ID=cds-WP_012720086.1;Parent=gene-RAF_RS06640;Dbxref=GenBank:WP_012720086.1;Name=WP_012720086.1;Ontology_term=GO:0033014,GO:0003870,GO:0030170;gbkey=CDS;gene=hemA;go_function=5-aminolevulinate synthase activity|0003870||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271634.1;locus_tag=RAF_RS06640;product=5-aminolevulinate synthase;protein_id=WP_012720086.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1218219	1218541	.	+	.	ID=gene-RAF_RS06645;Name=RAF_RS06645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06645;pseudo=true
NC_012633.1	Protein Homology	CDS	1218219	1218541	.	+	0	ID=cds-RAF_RS06645;Parent=gene-RAF_RS06645;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977862.1;locus_tag=RAF_RS06645;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1218945	1220282	.	+	.	ID=gene-RAF_RS06650;Name=tig;gbkey=Gene;gene=tig;gene_biotype=protein_coding;locus_tag=RAF_RS06650;old_locus_tag=RAF_ORF1194
NC_012633.1	Protein Homology	CDS	1218945	1220282	.	+	0	ID=cds-WP_012720087.1;Parent=gene-RAF_RS06650;Dbxref=GenBank:WP_012720087.1;Name=WP_012720087.1;Ontology_term=GO:0015031,GO:0051083,GO:0003755,GO:0051082,GO:0005854;gbkey=CDS;gene=tig;go_component=nascent polypeptide-associated complex|0005854||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,unfolded protein binding|0051082||IEA;go_process=protein transport|0015031||IEA,'de novo' cotranslational protein folding|0051083||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191258.1;locus_tag=RAF_RS06650;product=trigger factor;protein_id=WP_012720087.1;transl_table=11
NC_012633.1	RefSeq	gene	1220386	1221378	.	-	.	ID=gene-RAF_RS06655;Name=obgE;gbkey=Gene;gene=obgE;gene_biotype=protein_coding;locus_tag=RAF_RS06655;old_locus_tag=RAF_ORF1195
NC_012633.1	Protein Homology	CDS	1220386	1221378	.	-	0	ID=cds-WP_041472053.1;Parent=gene-RAF_RS06655;Dbxref=GenBank:WP_041472053.1;Name=WP_041472053.1;Ontology_term=GO:0000287,GO:0003924,GO:0005525;gbkey=CDS;gene=obgE;go_function=magnesium ion binding|0000287||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150159.1;locus_tag=RAF_RS06655;product=GTPase ObgE;protein_id=WP_041472053.1;transl_table=11
NC_012633.1	RefSeq	gene	1221487	1222794	.	-	.	ID=gene-RAF_RS06660;Name=RAF_RS06660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06660;old_locus_tag=RAF_ORF1196
NC_012633.1	Protein Homology	CDS	1221487	1222794	.	-	0	ID=cds-WP_012720089.1;Parent=gene-RAF_RS06660;Dbxref=GenBank:WP_012720089.1;Name=WP_012720089.1;Ontology_term=GO:0046912;gbkey=CDS;go_function=acyltransferase activity%2C acyl groups converted into alkyl on transfer|0046912||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409697.1;locus_tag=RAF_RS06660;product=citrate synthase;protein_id=WP_012720089.1;transl_table=11
NC_012633.1	RefSeq	gene	1223495	1224280	.	-	.	ID=gene-RAF_RS06670;Name=RAF_RS06670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06670;old_locus_tag=RAF_ORF1197
NC_012633.1	Protein Homology	CDS	1223495	1224280	.	-	0	ID=cds-WP_041471978.1;Parent=gene-RAF_RS06670;Dbxref=GenBank:WP_041471978.1;Name=WP_041471978.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442742.1;locus_tag=RAF_RS06670;product=uracil-DNA glycosylase family protein;protein_id=WP_041471978.1;transl_table=11
NC_012633.1	RefSeq	gene	1224297	1225238	.	+	.	ID=gene-RAF_RS06675;Name=RAF_RS06675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06675;old_locus_tag=RAF_ORF1198
NC_012633.1	Protein Homology	CDS	1224297	1225238	.	+	0	ID=cds-WP_012720091.1;Parent=gene-RAF_RS06675;Dbxref=GenBank:WP_012720091.1;Name=WP_012720091.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917242.1;locus_tag=RAF_RS06675;product=RluA family pseudouridine synthase;protein_id=WP_012720091.1;transl_table=11
NC_012633.1	RefSeq	gene	1225530	1226066	.	+	.	ID=gene-RAF_RS10205;Name=RAF_RS10205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10205
NC_012633.1	Protein Homology	CDS	1225530	1226066	.	+	0	ID=cds-WP_234943906.1;Parent=gene-RAF_RS10205;Dbxref=GenBank:WP_234943906.1;Name=WP_234943906.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997165.1;locus_tag=RAF_RS10205;product=hypothetical protein;protein_id=WP_234943906.1;transl_table=11
NC_012633.1	RefSeq	gene	1225985	1226662	.	+	.	ID=gene-RAF_RS06690;Name=RAF_RS06690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06690;old_locus_tag=RAF_ORF1199
NC_012633.1	Protein Homology	CDS	1225985	1226662	.	+	0	ID=cds-WP_234943907.1;Parent=gene-RAF_RS06690;Dbxref=GenBank:WP_234943907.1;Name=WP_234943907.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977870.1;locus_tag=RAF_RS06690;product=hypothetical protein;protein_id=WP_234943907.1;transl_table=11
NC_012633.1	RefSeq	gene	1226691	1226876	.	+	.	ID=gene-RAF_RS06695;Name=RAF_RS06695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06695
NC_012633.1	Protein Homology	CDS	1226691	1226876	.	+	0	ID=cds-WP_041471979.1;Parent=gene-RAF_RS06695;Dbxref=GenBank:WP_041471979.1;Name=WP_041471979.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151419.1;locus_tag=RAF_RS06695;product=hypothetical protein;protein_id=WP_041471979.1;transl_table=11
NC_012633.1	RefSeq	gene	1226885	1228459	.	+	.	ID=gene-RAF_RS06700;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;locus_tag=RAF_RS06700;old_locus_tag=RAF_ORF1201
NC_012633.1	Protein Homology	CDS	1226885	1228459	.	+	0	ID=cds-WP_010977871.1;Parent=gene-RAF_RS06700;Dbxref=GenBank:WP_010977871.1;Name=WP_010977871.1;gbkey=CDS;gene=trmB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016946028.1;locus_tag=RAF_RS06700;product=bifunctional peptide chain release factor N(5)-glutamine methyltransferase PrmC/tRNA (guanosine(46)-N7)-methyltransferase TrmB;protein_id=WP_010977871.1;transl_table=11
NC_012633.1	RefSeq	gene	1228425	1229363	.	-	.	ID=gene-RAF_RS06705;Name=RAF_RS06705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06705;old_locus_tag=RAF_ORF1202
NC_012633.1	Protein Homology	CDS	1228425	1229363	.	-	0	ID=cds-WP_004997156.1;Parent=gene-RAF_RS06705;Dbxref=GenBank:WP_004997156.1;Name=WP_004997156.1;Ontology_term=GO:0006400,GO:0003725,GO:0061710;gbkey=CDS;go_function=double-stranded RNA binding|0003725||IEA,L-threonylcarbamoyladenylate synthase|0061710||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917245.1;locus_tag=RAF_RS06705;product=L-threonylcarbamoyladenylate synthase;protein_id=WP_004997156.1;transl_table=11
NC_012633.1	RefSeq	gene	1229360	1231354	.	-	.	ID=gene-RAF_RS06710;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=RAF_RS06710;old_locus_tag=RAF_ORF1203
NC_012633.1	Protein Homology	CDS	1229360	1231354	.	-	0	ID=cds-WP_012720092.1;Parent=gene-RAF_RS06710;Dbxref=GenBank:WP_012720092.1;Name=WP_012720092.1;Ontology_term=GO:0006426,GO:0000166,GO:0004820,GO:0005524,GO:0005737;gbkey=CDS;gene=glyS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glycine-tRNA ligase activity|0004820||IEA,ATP binding|0005524||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012720092.1;locus_tag=RAF_RS06710;product=glycine--tRNA ligase subunit beta;protein_id=WP_012720092.1;transl_table=11
NC_012633.1	RefSeq	gene	1231351	1232217	.	-	.	ID=gene-RAF_RS06715;Name=RAF_RS06715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06715;old_locus_tag=RAF_ORF1204
NC_012633.1	Protein Homology	CDS	1231351	1232217	.	-	0	ID=cds-WP_010977874.1;Parent=gene-RAF_RS06715;Dbxref=GenBank:WP_010977874.1;Name=WP_010977874.1;Ontology_term=GO:0006426,GO:0000166,GO:0004820,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,glycine-tRNA ligase activity|0004820||IEA,ATP binding|0005524||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012153238.1;locus_tag=RAF_RS06715;product=glycine--tRNA ligase subunit alpha;protein_id=WP_010977874.1;transl_table=11
NC_012633.1	RefSeq	gene	1232249	1232656	.	-	.	ID=gene-RAF_RS06720;Name=RAF_RS06720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06720;old_locus_tag=RAF_ORF1205
NC_012633.1	Protein Homology	CDS	1232249	1232656	.	-	0	ID=cds-WP_012720093.1;Parent=gene-RAF_RS06720;Dbxref=GenBank:WP_012720093.1;Name=WP_012720093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409707.1;locus_tag=RAF_RS06720;product=type II toxin-antitoxin system VapC family toxin;protein_id=WP_012720093.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1232653	1232886	.	-	.	ID=gene-RAF_RS06725;Name=RAF_RS06725;end_range=1232886,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06725;old_locus_tag=RAF_ORF1206;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	1232653	1232886	.	-	0	ID=cds-RAF_RS06725;Parent=gene-RAF_RS06725;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0110001;end_range=1232886,.;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014366170.1;locus_tag=RAF_RS06725;partial=true;product=type II toxin-antitoxin system Phd/YefM family antitoxin;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1232986	1233615	.	-	.	ID=gene-RAF_RS06730;Name=RAF_RS06730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06730;old_locus_tag=RAF_ORF1207
NC_012633.1	Protein Homology	CDS	1232986	1233615	.	-	0	ID=cds-WP_004997144.1;Parent=gene-RAF_RS06730;Dbxref=GenBank:WP_004997144.1;Name=WP_004997144.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997144.1;locus_tag=RAF_RS06730;product=epoxyqueuosine reductase QueH;protein_id=WP_004997144.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1233617	1234870	.	-	.	ID=gene-RAF_RS06735;Name=RAF_RS06735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06735;old_locus_tag=RAF_ORF1208;pseudo=true
NC_012633.1	Protein Homology	CDS	1233617	1234870	.	-	0	ID=cds-RAF_RS06735;Parent=gene-RAF_RS06735;Note=frameshifted%3B internal stop;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442749.1;locus_tag=RAF_RS06735;product=MFS transporter;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1235086	1236036	.	-	.	ID=gene-RAF_RS06740;Name=RAF_RS06740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06740;old_locus_tag=RAF_ORF1211
NC_012633.1	Protein Homology	CDS	1235086	1236036	.	-	0	ID=cds-WP_012720095.1;Parent=gene-RAF_RS06740;Dbxref=GenBank:WP_012720095.1;Name=WP_012720095.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442750.1;locus_tag=RAF_RS06740;product=RP853 family protein;protein_id=WP_012720095.1;transl_table=11
NC_012633.1	RefSeq	gene	1236046	1236681	.	-	.	ID=gene-RAF_RS06745;Name=RAF_RS06745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06745;old_locus_tag=RAF_ORF1212
NC_012633.1	Protein Homology	CDS	1236046	1236681	.	-	0	ID=cds-WP_012720096.1;Parent=gene-RAF_RS06745;Dbxref=GenBank:WP_012720096.1;Name=WP_012720096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010420910.1;locus_tag=RAF_RS06745;product=hypothetical protein;protein_id=WP_012720096.1;transl_table=11
NC_012633.1	RefSeq	gene	1236756	1238327	.	-	.	ID=gene-RAF_RS06750;Name=RAF_RS06750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06750;old_locus_tag=RAF_ORF1213
NC_012633.1	Protein Homology	CDS	1236756	1238327	.	-	0	ID=cds-WP_012720097.1;Parent=gene-RAF_RS06750;Dbxref=GenBank:WP_012720097.1;Name=WP_012720097.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596770.1;locus_tag=RAF_RS06750;product=hypothetical protein;protein_id=WP_012720097.1;transl_table=11
NC_012633.1	RefSeq	gene	1238526	1241162	.	+	.	ID=gene-RAF_RS06755;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;locus_tag=RAF_RS06755;old_locus_tag=RAF_ORF1214
NC_012633.1	Protein Homology	CDS	1238526	1241162	.	+	0	ID=cds-WP_012720098.1;Parent=gene-RAF_RS06755;Dbxref=GenBank:WP_012720098.1;Name=WP_012720098.1;Ontology_term=GO:0006419,GO:0000166,GO:0004813,GO:0005737;gbkey=CDS;gene=alaS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,alanine-tRNA ligase activity|0004813||IEA;go_process=alanyl-tRNA aminoacylation|0006419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442753.1;locus_tag=RAF_RS06755;product=alanine--tRNA ligase;protein_id=WP_012720098.1;transl_table=11
NC_012633.1	RefSeq	gene	1241371	1242108	.	-	.	ID=gene-RAF_RS06760;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;locus_tag=RAF_RS06760;old_locus_tag=RAF_ORF1215
NC_012633.1	Protein Homology	CDS	1241371	1242108	.	-	0	ID=cds-WP_012720099.1;Parent=gene-RAF_RS06760;Dbxref=GenBank:WP_012720099.1;Name=WP_012720099.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truA;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012150184.1;locus_tag=RAF_RS06760;product=tRNA pseudouridine(38-40) synthase TruA;protein_id=WP_012720099.1;transl_table=11
NC_012633.1	RefSeq	gene	1242204	1244108	.	-	.	ID=gene-RAF_RS06765;Name=rpoD;gbkey=Gene;gene=rpoD;gene_biotype=protein_coding;locus_tag=RAF_RS06765;old_locus_tag=RAF_ORF1216
NC_012633.1	Protein Homology	CDS	1242204	1244108	.	-	0	ID=cds-WP_004997130.1;Parent=gene-RAF_RS06765;Dbxref=GenBank:WP_004997130.1;Name=WP_004997130.1;Ontology_term=GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoD;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442755.1;locus_tag=RAF_RS06765;product=RNA polymerase sigma factor RpoD;protein_id=WP_004997130.1;transl_table=11
NC_012633.1	RefSeq	gene	1244153	1245940	.	-	.	ID=gene-RAF_RS06770;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=RAF_RS06770;old_locus_tag=RAF_ORF1217
NC_012633.1	Protein Homology	CDS	1244153	1245940	.	-	0	ID=cds-WP_012720100.1;Parent=gene-RAF_RS06770;Dbxref=GenBank:WP_012720100.1;Name=WP_012720100.1;Ontology_term=GO:0006269,GO:0003896;gbkey=CDS;gene=dnaG;go_function=DNA primase activity|0003896||IEA;go_process=DNA replication%2C synthesis of primer|0006269||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191276.1;locus_tag=RAF_RS06770;product=DNA primase;protein_id=WP_012720100.1;transl_table=11
NC_012633.1	RefSeq	gene	1245945	1246559	.	-	.	ID=gene-RAF_RS06775;Name=RAF_RS06775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06775;old_locus_tag=RAF_ORF1218
NC_012633.1	Protein Homology	CDS	1245945	1246559	.	-	0	ID=cds-WP_012720101.1;Parent=gene-RAF_RS06775;Dbxref=GenBank:WP_012720101.1;Name=WP_012720101.1;Ontology_term=GO:0016310,GO:0016301;gbkey=CDS;go_function=kinase activity|0016301||IEA;go_process=phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596759.1;locus_tag=RAF_RS06775;product=diacylglycerol/polyprenol kinase family protein;protein_id=WP_012720101.1;transl_table=11
NC_012633.1	RefSeq	gene	1246827	1247315	.	+	.	ID=gene-RAF_RS06780;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=RAF_RS06780;old_locus_tag=RAF_ORF1219
NC_012633.1	Protein Homology	CDS	1246827	1247315	.	+	0	ID=cds-WP_041471980.1;Parent=gene-RAF_RS06780;Dbxref=GenBank:WP_041471980.1;Name=WP_041471980.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=greA;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997127.1;locus_tag=RAF_RS06780;product=transcription elongation factor GreA;protein_id=WP_041471980.1;transl_table=11
NC_012633.1	RefSeq	gene	1247474	1247872	.	-	.	ID=gene-RAF_RS06785;Name=RAF_RS06785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06785;old_locus_tag=RAF_ORF1220
NC_012633.1	Protein Homology	CDS	1247474	1247872	.	-	0	ID=cds-WP_012720103.1;Parent=gene-RAF_RS06785;Dbxref=GenBank:WP_012720103.1;Name=WP_012720103.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926652.1;locus_tag=RAF_RS06785;product=NAD(P) transhydrogenase subunit alpha;protein_id=WP_012720103.1;transl_table=11
NC_012633.1	RefSeq	gene	1247869	1248993	.	-	.	ID=gene-RAF_RS06790;Name=RAF_RS06790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06790;old_locus_tag=RAF_ORF1221
NC_012633.1	Protein Homology	CDS	1247869	1248993	.	-	0	ID=cds-WP_012720104.1;Parent=gene-RAF_RS06790;Dbxref=GenBank:WP_012720104.1;Name=WP_012720104.1;Ontology_term=GO:0016491,GO:0070403;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442760.1;locus_tag=RAF_RS06790;product=NAD(P) transhydrogenase subunit alpha;protein_id=WP_012720104.1;transl_table=11
NC_012633.1	RefSeq	gene	1249069	1249707	.	+	.	ID=gene-RAF_RS06795;Name=RAF_RS06795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06795;old_locus_tag=RAF_ORF1222
NC_012633.1	Protein Homology	CDS	1249069	1249707	.	+	0	ID=cds-WP_012720105.1;Parent=gene-RAF_RS06795;Dbxref=GenBank:WP_012720105.1;Name=WP_012720105.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014391651.1;locus_tag=RAF_RS06795;product=outer-membrane lipoprotein carrier protein LolA;protein_id=WP_012720105.1;transl_table=11
NC_012633.1	RefSeq	gene	1249728	1249821	.	+	.	ID=gene-RAF_RS07115;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=SRP_RNA;locus_tag=RAF_RS07115;old_locus_tag=RAF_RNA37
NC_012633.1	cmsearch	SRP_RNA	1249728	1249821	.	+	.	ID=rna-RAF_RS07115;Parent=gene-RAF_RS07115;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS07115;product=signal recognition particle sRNA small type
NC_012633.1	cmsearch	exon	1249728	1249821	.	+	.	ID=exon-RAF_RS07115-1;Parent=rna-RAF_RS07115;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=RAF_RS07115;product=signal recognition particle sRNA small type
NC_012633.1	RefSeq	gene	1249933	1251462	.	+	.	ID=gene-RAF_RS06800;Name=dnaX;gbkey=Gene;gene=dnaX;gene_biotype=protein_coding;locus_tag=RAF_RS06800;old_locus_tag=RAF_ORF1223
NC_012633.1	Protein Homology	CDS	1249933	1251462	.	+	0	ID=cds-WP_041472057.1;Parent=gene-RAF_RS06800;Dbxref=GenBank:WP_041472057.1;Name=WP_041472057.1;Ontology_term=GO:0006260,GO:0003887,GO:0005524,GO:0009360;gbkey=CDS;gene=dnaX;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA-directed DNA polymerase activity|0003887||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997117.1;locus_tag=RAF_RS06800;product=DNA polymerase III subunit gamma/tau;protein_id=WP_041472057.1;transl_table=11
NC_012633.1	RefSeq	gene	1251482	1251805	.	+	.	ID=gene-RAF_RS06805;Name=RAF_RS06805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06805;old_locus_tag=RAF_ORF1224
NC_012633.1	Protein Homology	CDS	1251482	1251805	.	+	0	ID=cds-WP_010977891.1;Parent=gene-RAF_RS06805;Dbxref=GenBank:WP_010977891.1;Name=WP_010977891.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151438.1;locus_tag=RAF_RS06805;product=YbaB/EbfC family nucleoid-associated protein;protein_id=WP_010977891.1;transl_table=11
NC_012633.1	RefSeq	gene	1252158	1252280	.	-	.	ID=gene-RAF_RS10460;Name=RAF_RS10460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10460
NC_012633.1	Protein Homology	CDS	1252158	1252280	.	-	0	ID=cds-WP_014411152.1;Parent=gene-RAF_RS10460;Dbxref=GenBank:WP_014411152.1;Name=WP_014411152.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014273876.1;locus_tag=RAF_RS10460;product=hypothetical protein;protein_id=WP_014411152.1;transl_table=11
NC_012633.1	RefSeq	gene	1252670	1253365	.	-	.	ID=gene-RAF_RS06810;Name=RAF_RS06810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06810;old_locus_tag=RAF_ORF1225
NC_012633.1	Protein Homology	CDS	1252670	1253365	.	-	0	ID=cds-WP_012720107.1;Parent=gene-RAF_RS06810;Dbxref=GenBank:WP_012720107.1;Name=WP_012720107.1;Ontology_term=GO:0004190;gbkey=CDS;go_function=aspartic-type endopeptidase activity|0004190||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596749.1;locus_tag=RAF_RS06810;product=TIGR02281 family clan AA aspartic protease;protein_id=WP_012720107.1;transl_table=11
NC_012633.1	RefSeq	gene	1253426	1253620	.	-	.	ID=gene-RAF_RS10800;Name=RAF_RS10800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10800
NC_012633.1	Protein Homology	CDS	1253426	1253620	.	-	0	ID=cds-WP_410524345.1;Parent=gene-RAF_RS10800;Dbxref=GenBank:WP_410524345.1;Name=WP_410524345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014365093.1;locus_tag=RAF_RS10800;product=serine hydrolase;protein_id=WP_410524345.1;transl_table=11
NC_012633.1	RefSeq	gene	1253656	1253847	.	-	.	ID=gene-RAF_RS06815;Name=RAF_RS06815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06815
NC_012633.1	Protein Homology	CDS	1253656	1253847	.	-	0	ID=cds-WP_041471981.1;Parent=gene-RAF_RS06815;Dbxref=GenBank:WP_041471981.1;Name=WP_041471981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012262643.1;locus_tag=RAF_RS06815;product=hypothetical protein;protein_id=WP_041471981.1;transl_table=11
NC_012633.1	RefSeq	gene	1254195	1254356	.	-	.	ID=gene-RAF_RS09135;Name=RAF_RS09135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09135
NC_012633.1	GeneMarkS-2+	CDS	1254195	1254356	.	-	0	ID=cds-WP_162465577.1;Parent=gene-RAF_RS09135;Dbxref=GenBank:WP_162465577.1;Name=WP_162465577.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09135;product=hypothetical protein;protein_id=WP_162465577.1;transl_table=11
NC_012633.1	RefSeq	gene	1254553	1254792	.	-	.	ID=gene-RAF_RS06825;Name=RAF_RS06825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06825;old_locus_tag=RAF_ORF1226
NC_012633.1	Protein Homology	CDS	1254553	1254792	.	-	0	ID=cds-WP_012720108.1;Parent=gene-RAF_RS06825;Dbxref=GenBank:WP_012720108.1;Name=WP_012720108.1;Ontology_term=GO:0006355,GO:0045927,GO:0003677,GO:0097351,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=DNA binding|0003677||IEA,toxin sequestering activity|0097351||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,positive regulation of growth|0045927||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012151447.1;locus_tag=RAF_RS06825;product=type II toxin-antitoxin system Phd/YefM family antitoxin;protein_id=WP_012720108.1;transl_table=11
NC_012633.1	RefSeq	gene	1254998	1255720	.	-	.	ID=gene-RAF_RS06830;Name=RAF_RS06830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06830;old_locus_tag=RAF_ORF1227
NC_012633.1	Protein Homology	CDS	1254998	1255720	.	-	0	ID=cds-WP_010977895.1;Parent=gene-RAF_RS06830;Dbxref=GenBank:WP_010977895.1;Name=WP_010977895.1;Ontology_term=GO:0005524,GO:0015424,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945369.1;locus_tag=RAF_RS06830;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_010977895.1;transl_table=11
NC_012633.1	RefSeq	gene	1255724	1256488	.	-	.	ID=gene-RAF_RS06835;Name=RAF_RS06835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06835;old_locus_tag=RAF_ORF1228
NC_012633.1	Protein Homology	CDS	1255724	1256488	.	-	0	ID=cds-WP_012720109.1;Parent=gene-RAF_RS06835;Dbxref=GenBank:WP_012720109.1;Name=WP_012720109.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442768.1;locus_tag=RAF_RS06835;product=MBL fold metallo-hydrolase;protein_id=WP_012720109.1;transl_table=11
NC_012633.1	RefSeq	gene	1256503	1257150	.	+	.	ID=gene-RAF_RS06840;Name=RAF_RS06840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06840;old_locus_tag=RAF_ORF1229
NC_012633.1	Protein Homology	CDS	1256503	1257150	.	+	0	ID=cds-WP_012720110.1;Parent=gene-RAF_RS06840;Dbxref=GenBank:WP_012720110.1;Name=WP_012720110.1;Ontology_term=GO:0008610,GO:0046839,GO:0042577;gbkey=CDS;go_function=lipid phosphatase activity|0042577||IEA;go_process=lipid biosynthetic process|0008610||IEA,phospholipid dephosphorylation|0046839||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917271.1;locus_tag=RAF_RS06840;product=phosphatase PAP2 family protein;protein_id=WP_012720110.1;transl_table=11
NC_012633.1	RefSeq	gene	1257244	1257507	.	+	.	ID=gene-RAF_RS06845;Name=RAF_RS06845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06845;old_locus_tag=RAF_ORF1230
NC_012633.1	Protein Homology	CDS	1257244	1257507	.	+	0	ID=cds-WP_012151450.1;Parent=gene-RAF_RS06845;Dbxref=GenBank:WP_012151450.1;Name=WP_012151450.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442770.1;locus_tag=RAF_RS06845;product=type II toxin-antitoxin system RelB/DinJ family antitoxin;protein_id=WP_012151450.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1257494	1257745	.	+	.	ID=gene-RAF_RS10675;Name=RAF_RS10675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10675;pseudo=true
NC_012633.1	Protein Homology	CDS	1257494	1257745	.	+	0	ID=cds-RAF_RS10675;Parent=gene-RAF_RS10675;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011114071.1;locus_tag=RAF_RS10675;product=type II toxin-antitoxin system YafQ family toxin;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1257881	1258963	.	+	.	ID=gene-RAF_RS06850;Name=RAF_RS06850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06850;old_locus_tag=RAF_ORF1232
NC_012633.1	Protein Homology	CDS	1257881	1258963	.	+	0	ID=cds-WP_041472058.1;Parent=gene-RAF_RS06850;Dbxref=GenBank:WP_041472058.1;Name=WP_041472058.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596741.1;locus_tag=RAF_RS06850;product=LptF/LptG family permease;protein_id=WP_041472058.1;transl_table=11
NC_012633.1	RefSeq	gene	1258969	1259433	.	-	.	ID=gene-RAF_RS06855;Name=RAF_RS06855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06855;old_locus_tag=RAF_ORF1233
NC_012633.1	Protein Homology	CDS	1258969	1259433	.	-	0	ID=cds-WP_004997101.1;Parent=gene-RAF_RS06855;Dbxref=GenBank:WP_004997101.1;Name=WP_004997101.1;Ontology_term=GO:0006260,GO:0006261,GO:0003677,GO:0003887;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA,DNA-templated DNA replication|0006261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014409737.1;locus_tag=RAF_RS06855;product=DNA polymerase III subunit chi;protein_id=WP_004997101.1;transl_table=11
NC_012633.1	RefSeq	gene	1259470	1259554	.	-	.	ID=gene-RAF_RS06860;Name=RAF_RS06860;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS06860;old_locus_tag=RAF_RNA38
NC_012633.1	tRNAscan-SE	tRNA	1259470	1259554	.	-	.	ID=rna-RAF_RS06860;Parent=gene-RAF_RS06860;anticodon=(pos:complement(1259518..1259520));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS06860;product=tRNA-Leu
NC_012633.1	tRNAscan-SE	exon	1259470	1259554	.	-	.	ID=exon-RAF_RS06860-1;Parent=rna-RAF_RS06860;anticodon=(pos:complement(1259518..1259520));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS06860;product=tRNA-Leu
NC_012633.1	RefSeq	gene	1259633	1260778	.	-	.	ID=gene-RAF_RS06865;Name=dapE;gbkey=Gene;gene=dapE;gene_biotype=protein_coding;locus_tag=RAF_RS06865;old_locus_tag=RAF_ORF1234
NC_012633.1	Protein Homology	CDS	1259633	1260778	.	-	0	ID=cds-WP_012720113.1;Parent=gene-RAF_RS06865;Dbxref=GenBank:WP_012720113.1;Name=WP_012720113.1;Ontology_term=GO:0009089,GO:0009014;gbkey=CDS;gene=dapE;go_function=succinyl-diaminopimelate desuccinylase activity|0009014||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004596737.1;locus_tag=RAF_RS06865;product=succinyl-diaminopimelate desuccinylase;protein_id=WP_012720113.1;transl_table=11
NC_012633.1	RefSeq	gene	1260832	1261434	.	-	.	ID=gene-RAF_RS08425;Name=RAF_RS08425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08425;old_locus_tag=RAF_ORF1235
NC_012633.1	Protein Homology	CDS	1260832	1261434	.	-	0	ID=cds-WP_012720114.1;Parent=gene-RAF_RS08425;Dbxref=GenBank:WP_012720114.1;Name=WP_012720114.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012720114.1;locus_tag=RAF_RS08425;product=restriction endonuclease subunit S;protein_id=WP_012720114.1;transl_table=11
NC_012633.1	RefSeq	gene	1261547	1261744	.	-	.	ID=gene-RAF_RS06875;Name=RAF_RS06875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06875;old_locus_tag=RAF_ORF1236
NC_012633.1	Protein Homology	CDS	1261547	1261744	.	-	0	ID=cds-WP_012720115.1;Parent=gene-RAF_RS06875;Dbxref=GenBank:WP_012720115.1;Name=WP_012720115.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014419973.1;locus_tag=RAF_RS06875;product=hypothetical protein;protein_id=WP_012720115.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1261857	1262377	.	-	.	ID=gene-RAF_RS09540;Name=RAF_RS09540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS09540;pseudo=true
NC_012633.1	Protein Homology	CDS	1261857	1262377	.	-	0	ID=cds-RAF_RS09540;Parent=gene-RAF_RS09540;Note=frameshifted;Ontology_term=GO:0008168,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: protein motif:HMM:NF014442.5;locus_tag=RAF_RS09540;product=class I SAM-dependent DNA methyltransferase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1262497	1262580	.	-	.	ID=gene-RAF_RS10805;Name=RAF_RS10805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10805
NC_012633.1	Protein Homology	CDS	1262497	1262580	.	-	0	ID=cds-WP_080582477.1;Parent=gene-RAF_RS10805;Dbxref=GenBank:WP_080582477.1;Name=WP_080582477.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014442.5;locus_tag=RAF_RS10805;product=hypothetical protein;protein_id=WP_080582477.1;transl_table=11
NC_012633.1	RefSeq	gene	1262609	1262962	.	-	.	ID=gene-RAF_RS09555;Name=RAF_RS09555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09555
NC_012633.1	Protein Homology	CDS	1262609	1262962	.	-	0	ID=cds-WP_041471983.1;Parent=gene-RAF_RS09555;Dbxref=GenBank:WP_041471983.1;Name=WP_041471983.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997087.1;locus_tag=RAF_RS09555;product=SAM-dependent DNA methyltransferase;protein_id=WP_041471983.1;transl_table=11
NC_012633.1	RefSeq	gene	1263093	1263230	.	-	.	ID=gene-RAF_RS09560;Name=RAF_RS09560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09560
NC_012633.1	Protein Homology	CDS	1263093	1263230	.	-	0	ID=cds-WP_041471984.1;Parent=gene-RAF_RS09560;Dbxref=GenBank:WP_041471984.1;Name=WP_041471984.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728405.1;locus_tag=RAF_RS09560;product=hypothetical protein;protein_id=WP_041471984.1;transl_table=11
NC_012633.1	RefSeq	gene	1263221	1263451	.	-	.	ID=gene-RAF_RS09565;Name=RAF_RS09565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09565;old_locus_tag=RAF_ORF1240
NC_012633.1	GeneMarkS-2+	CDS	1263221	1263451	.	-	0	ID=cds-WP_012720116.1;Parent=gene-RAF_RS09565;Dbxref=GenBank:WP_012720116.1;Name=WP_012720116.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09565;product=hypothetical protein;protein_id=WP_012720116.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1263565	1264444	.	+	.	ID=gene-RAF_RS08435;Name=RAF_RS08435;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS08435;old_locus_tag=RAF_ORF1241;pseudo=true
NC_012633.1	Protein Homology	CDS	1263565	1264444	.	+	0	ID=cds-RAF_RS08435;Parent=gene-RAF_RS08435;Note=frameshifted;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF018648.5;locus_tag=RAF_RS08435;product=Na+/H+ antiporter NhaA;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1264533	1265048	.	-	.	ID=gene-RAF_RS06910;Name=RAF_RS06910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06910;old_locus_tag=RAF_ORF1242
NC_012633.1	Protein Homology	CDS	1264533	1265048	.	-	0	ID=cds-WP_010977909.1;Parent=gene-RAF_RS06910;Dbxref=GenBank:WP_010977909.1;Name=WP_010977909.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014408046.1;locus_tag=RAF_RS06910;product=YdcF family protein;protein_id=WP_010977909.1;transl_table=11
NC_012633.1	RefSeq	gene	1265045	1265674	.	-	.	ID=gene-RAF_RS06915;Name=lipB;gbkey=Gene;gene=lipB;gene_biotype=protein_coding;locus_tag=RAF_RS06915;old_locus_tag=RAF_ORF1243
NC_012633.1	Protein Homology	CDS	1265045	1265674	.	-	0	ID=cds-WP_012720118.1;Parent=gene-RAF_RS06915;Dbxref=GenBank:WP_012720118.1;Name=WP_012720118.1;Ontology_term=GO:0009249,GO:0033819;gbkey=CDS;gene=lipB;go_function=lipoyl(octanoyl) transferase activity|0033819||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271683.1;locus_tag=RAF_RS06915;product=lipoyl(octanoyl) transferase LipB;protein_id=WP_012720118.1;transl_table=11
NC_012633.1	RefSeq	gene	1265671	1266414	.	-	.	ID=gene-RAF_RS06920;Name=RAF_RS06920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06920;old_locus_tag=RAF_ORF1244
NC_012633.1	Protein Homology	CDS	1265671	1266414	.	-	0	ID=cds-WP_004997081.1;Parent=gene-RAF_RS06920;Dbxref=GenBank:WP_004997081.1;Name=WP_004997081.1;Ontology_term=GO:0071555,GO:0008270,GO:0008745;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016945374.1;locus_tag=RAF_RS06920;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_004997081.1;transl_table=11
NC_012633.1	RefSeq	gene	1266652	1266726	.	-	.	ID=gene-RAF_RS06925;Name=RAF_RS06925;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS06925;old_locus_tag=RAF_RNA39
NC_012633.1	tRNAscan-SE	tRNA	1266652	1266726	.	-	.	ID=rna-RAF_RS06925;Parent=gene-RAF_RS06925;anticodon=(pos:complement(1266692..1266694));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS06925;product=tRNA-Thr
NC_012633.1	tRNAscan-SE	exon	1266652	1266726	.	-	.	ID=exon-RAF_RS06925-1;Parent=rna-RAF_RS06925;anticodon=(pos:complement(1266692..1266694));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=RAF_RS06925;product=tRNA-Thr
NC_012633.1	RefSeq	gene	1266911	1267246	.	-	.	ID=gene-RAF_RS06930;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=RAF_RS06930;old_locus_tag=RAF_ORF1245
NC_012633.1	Protein Homology	CDS	1266911	1267246	.	-	0	ID=cds-WP_004997078.1;Parent=gene-RAF_RS06930;Dbxref=GenBank:WP_004997078.1;Name=WP_004997078.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsP;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004997078.1;locus_tag=RAF_RS06930;product=30S ribosomal protein S16;protein_id=WP_004997078.1;transl_table=11
NC_012633.1	RefSeq	gene	1267263	1267433	.	-	.	ID=gene-RAF_RS06935;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=RAF_RS06935;old_locus_tag=RAF_ORF1246
NC_012633.1	Protein Homology	CDS	1267263	1267433	.	-	0	ID=cds-WP_004997072.1;Parent=gene-RAF_RS06935;Dbxref=GenBank:WP_004997072.1;Name=WP_004997072.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmG;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011256695.1;locus_tag=RAF_RS06935;product=50S ribosomal protein L33;protein_id=WP_004997072.1;transl_table=11
NC_012633.1	RefSeq	gene	1267655	1269487	.	-	.	ID=gene-RAF_RS06940;Name=mutL;gbkey=Gene;gene=mutL;gene_biotype=protein_coding;locus_tag=RAF_RS06940;old_locus_tag=RAF_ORF1247
NC_012633.1	Protein Homology	CDS	1267655	1269487	.	-	0	ID=cds-WP_012720119.1;Parent=gene-RAF_RS06940;Dbxref=GenBank:WP_012720119.1;Name=WP_012720119.1;Ontology_term=GO:0006298,GO:0005524,GO:0016887,GO:0030983,GO:0032300;gbkey=CDS;gene=mutL;go_component=mismatch repair complex|0032300||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008579258.1;locus_tag=RAF_RS06940;product=DNA mismatch repair endonuclease MutL;protein_id=WP_012720119.1;transl_table=11
NC_012633.1	RefSeq	gene	1269484	1269648	.	-	.	ID=gene-RAF_RS08440;Name=RAF_RS08440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08440;old_locus_tag=RAF_ORF1248
NC_012633.1	Protein Homology	CDS	1269484	1269648	.	-	0	ID=cds-WP_010977913.1;Parent=gene-RAF_RS08440;Dbxref=GenBank:WP_010977913.1;Name=WP_010977913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442784.1;locus_tag=RAF_RS08440;product=zinc-finger domain-containing protein;protein_id=WP_010977913.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1270036	1270527	.	+	.	ID=gene-RAF_RS10215;Name=RAF_RS10215;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10215;old_locus_tag=RAF_ORF1249;pseudo=true
NC_012633.1	Protein Homology	CDS	1270036	1270527	.	+	0	ID=cds-RAF_RS10215;Parent=gene-RAF_RS10215;Note=internal stop;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024950.5;locus_tag=RAF_RS10215;product=SDR family NAD(P)-dependent oxidoreductase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1270578	1270658	.	+	.	ID=gene-RAF_RS10810;Name=RAF_RS10810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10810
NC_012633.1	Protein Homology	CDS	1270578	1270658	.	+	0	ID=cds-WP_268738944.1;Parent=gene-RAF_RS10810;Dbxref=GenBank:WP_268738944.1;Name=WP_268738944.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024950.5;locus_tag=RAF_RS10810;product=hypothetical protein;protein_id=WP_268738944.1;transl_table=11
NC_012633.1	RefSeq	gene	1271607	1271729	.	-	.	ID=gene-RAF_RS08455;Name=RAF_RS08455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08455
NC_012633.1	Protein Homology	CDS	1271607	1271729	.	-	0	ID=cds-WP_083762134.1;Parent=gene-RAF_RS08455;Dbxref=GenBank:WP_083762134.1;Name=WP_083762134.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926667.1;locus_tag=RAF_RS08455;product=tetratricopeptide repeat protein;protein_id=WP_083762134.1;transl_table=11
NC_012633.1	RefSeq	gene	1271788	1271928	.	-	.	ID=gene-RAF_RS08460;Name=RAF_RS08460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08460
NC_012633.1	Protein Homology	CDS	1271788	1271928	.	-	0	ID=cds-WP_016926668.1;Parent=gene-RAF_RS08460;Dbxref=GenBank:WP_016926668.1;Name=WP_016926668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016926668.1;locus_tag=RAF_RS08460;product=tetratricopeptide repeat protein;protein_id=WP_016926668.1;transl_table=11
NC_012633.1	RefSeq	gene	1271937	1272179	.	-	.	ID=gene-RAF_RS08995;Name=RAF_RS08995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS08995
NC_012633.1	Protein Homology	CDS	1271937	1272179	.	-	0	ID=cds-WP_148206985.1;Parent=gene-RAF_RS08995;Dbxref=GenBank:WP_148206985.1;Name=WP_148206985.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024816.5;locus_tag=RAF_RS08995;product=tetratricopeptide repeat protein;protein_id=WP_148206985.1;transl_table=11
NC_012633.1	RefSeq	gene	1272140	1272409	.	-	.	ID=gene-RAF_RS09000;Name=RAF_RS09000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09000
NC_012633.1	Protein Homology	CDS	1272140	1272409	.	-	0	ID=cds-WP_148206978.1;Parent=gene-RAF_RS09000;Dbxref=GenBank:WP_148206978.1;Name=WP_148206978.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010977918.1;locus_tag=RAF_RS09000;product=tetratricopeptide repeat protein;protein_id=WP_148206978.1;transl_table=11
NC_012633.1	RefSeq	gene	1272546	1273820	.	+	.	ID=gene-RAF_RS06955;Name=RAF_RS06955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06955;old_locus_tag=RAF_ORF1253
NC_012633.1	Protein Homology	CDS	1272546	1273820	.	+	0	ID=cds-WP_012720120.1;Parent=gene-RAF_RS06955;Dbxref=GenBank:WP_012720120.1;Name=WP_012720120.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917291.1;locus_tag=RAF_RS06955;product=MFS transporter;protein_id=WP_012720120.1;transl_table=11
NC_012633.1	RefSeq	gene	1273804	1274643	.	+	.	ID=gene-RAF_RS06960;Name=hemF;gbkey=Gene;gene=hemF;gene_biotype=protein_coding;locus_tag=RAF_RS06960;old_locus_tag=RAF_ORF1254
NC_012633.1	Protein Homology	CDS	1273804	1274643	.	+	0	ID=cds-WP_012720121.1;Parent=gene-RAF_RS06960;Dbxref=GenBank:WP_012720121.1;Name=WP_012720121.1;Ontology_term=GO:0006779,GO:0004109;gbkey=CDS;gene=hemF;go_function=coproporphyrinogen oxidase activity|0004109||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011271693.1;locus_tag=RAF_RS06960;product=oxygen-dependent coproporphyrinogen oxidase;protein_id=WP_012720121.1;transl_table=11
NC_012633.1	RefSeq	pseudogene	1274702	1275076	.	-	.	ID=gene-RAF_RS06965;Name=RAF_RS06965;end_range=1275076,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06965;old_locus_tag=RAF_ORF1255;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	1274702	1275076	.	-	0	ID=cds-RAF_RS06965;Parent=gene-RAF_RS06965;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1275076,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014548.5;locus_tag=RAF_RS06965;partial=true;product=BRO family protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1275095	1275238	.	-	.	ID=gene-RAF_RS09580;Name=RAF_RS09580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09580
NC_012633.1	Protein Homology	CDS	1275095	1275238	.	-	0	ID=cds-WP_016830581.1;Parent=gene-RAF_RS09580;Dbxref=GenBank:WP_016830581.1;Name=WP_016830581.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016728408.1;locus_tag=RAF_RS09580;product=hypothetical protein;protein_id=WP_016830581.1;transl_table=11
NC_012633.1	RefSeq	gene	1275659	1276096	.	-	.	ID=gene-RAF_RS06975;Name=hemJ;gbkey=Gene;gene=hemJ;gene_biotype=protein_coding;locus_tag=RAF_RS06975;old_locus_tag=RAF_ORF1257
NC_012633.1	Protein Homology	CDS	1275659	1276096	.	-	0	ID=cds-WP_012720122.1;Parent=gene-RAF_RS06975;Dbxref=GenBank:WP_012720122.1;Name=WP_012720122.1;gbkey=CDS;gene=hemJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442793.1;locus_tag=RAF_RS06975;product=protoporphyrinogen oxidase HemJ;protein_id=WP_012720122.1;transl_table=11
NC_012633.1	RefSeq	gene	1276108	1277148	.	-	.	ID=gene-RAF_RS06980;Name=hemH;gbkey=Gene;gene=hemH;gene_biotype=protein_coding;locus_tag=RAF_RS06980;old_locus_tag=RAF_ORF1258
NC_012633.1	Protein Homology	CDS	1276108	1277148	.	-	0	ID=cds-WP_012720123.1;Parent=gene-RAF_RS06980;Dbxref=GenBank:WP_012720123.1;Name=WP_012720123.1;Ontology_term=GO:0006779,GO:0004325;gbkey=CDS;gene=hemH;go_function=ferrochelatase activity|0004325||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016917294.1;locus_tag=RAF_RS06980;product=ferrochelatase;protein_id=WP_012720123.1;transl_table=11
NC_012633.1	RefSeq	gene	1277105	1278145	.	-	.	ID=gene-RAF_RS06985;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=RAF_RS06985;old_locus_tag=RAF_ORF1259
NC_012633.1	Protein Homology	CDS	1277105	1278145	.	-	0	ID=cds-WP_012720124.1;Parent=gene-RAF_RS06985;Dbxref=GenBank:WP_012720124.1;Name=WP_012720124.1;Ontology_term=GO:0006779,GO:0004853;gbkey=CDS;gene=hemE;go_function=uroporphyrinogen decarboxylase activity|0004853||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011191302.1;locus_tag=RAF_RS06985;product=uroporphyrinogen decarboxylase;protein_id=WP_012720124.1;transl_table=11
##sequence-region NC_012634.1 1 12377
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=347255
NC_012634.1	RefSeq	region	1	12377	.	+	.	ID=NC_012634.1:1..12377;Dbxref=taxon:347255;Is_circular=true;Name=pRAF;country=Ethiopia;gbkey=Src;genome=plasmid;mol_type=genomic DNA;nat-host=Amblyomma variegatum (cattle tick);plasmid-name=pRAF;strain=ESF-5
NC_012634.1	RefSeq	pseudogene	18	2193	.	+	.	ID=gene-RAF_RS07005;Name=RAF_RS07005;end_range=2193,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS07005;old_locus_tag=RAF_pORF1260;partial=true;pseudo=true;start_range=.,18
NC_012634.1	Protein Homology	CDS	18	2193	.	+	1	ID=cds-RAF_RS07005;Parent=gene-RAF_RS07005;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=2193,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012720125.1;locus_tag=RAF_RS07005;partial=true;product=DnaA N-terminal domain-containing protein;pseudo=true;start_range=.,18;transl_table=11
NC_012634.1	RefSeq	gene	2263	2964	.	+	.	ID=gene-RAF_RS07010;Name=RAF_RS07010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07010;old_locus_tag=RAF_pORF1261
NC_012634.1	Protein Homology	CDS	2263	2964	.	+	0	ID=cds-WP_012720126.1;Parent=gene-RAF_RS07010;Dbxref=GenBank:WP_012720126.1;Name=WP_012720126.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012720126.1;locus_tag=RAF_RS07010;product=hypothetical protein;protein_id=WP_012720126.1;transl_table=11
NC_012634.1	RefSeq	gene	3122	3706	.	+	.	ID=gene-RAF_RS07015;Name=RAF_RS07015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07015;old_locus_tag=RAF_pORF1262
NC_012634.1	Protein Homology	CDS	3122	3706	.	+	0	ID=cds-WP_012720127.1;Parent=gene-RAF_RS07015;Dbxref=GenBank:WP_012720127.1;Name=WP_012720127.1;Ontology_term=GO:0006310,GO:0015074,GO:0000150,GO:0003677;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010424174.1;locus_tag=RAF_RS07015;product=recombinase family protein;protein_id=WP_012720127.1;transl_table=11
NC_012634.1	RefSeq	pseudogene	3862	4491	.	-	.	ID=gene-RAF_RS07020;Name=RAF_RS07020;end_range=4491,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS07020;old_locus_tag=RAF_pORF1263;partial=true;pseudo=true
NC_012634.1	Protein Homology	CDS	3862	4491	.	-	0	ID=cds-RAF_RS07020;Parent=gene-RAF_RS07020;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0032196,GO:0003677,GO:0004536,GO:0004803;end_range=4491,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA nuclease activity|0004536||IEA,transposase activity|0004803||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA,transposition|0032196||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008581387.1;locus_tag=RAF_RS07020;partial=true;product=Rpn family recombination-promoting nuclease/putative transposase;pseudo=true;transl_table=11
NC_012634.1	RefSeq	pseudogene	4495	4701	.	+	.	ID=gene-RAF_RS10815;Name=RAF_RS10815;end_range=4701,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS10815;partial=true;pseudo=true;start_range=.,4495
NC_012634.1	Protein Homology	CDS	4495	4701	.	+	0	ID=cds-RAF_RS10815;Parent=gene-RAF_RS10815;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=4701,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014392383.1;locus_tag=RAF_RS10815;partial=true;product=hypothetical protein;pseudo=true;start_range=.,4495;transl_table=11
NC_012634.1	RefSeq	gene	4676	5761	.	-	.	ID=gene-RAF_RS07025;Name=RAF_RS07025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07025;old_locus_tag=RAF_pORF1264
NC_012634.1	Protein Homology	CDS	4676	5761	.	-	0	ID=cds-WP_012720129.1;Parent=gene-RAF_RS07025;Dbxref=GenBank:WP_012720129.1;Name=WP_012720129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012720129.1;locus_tag=RAF_RS07025;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_012720129.1;transl_table=11
NC_012634.1	RefSeq	gene	6236	6535	.	-	.	ID=gene-RAF_RS07030;Name=RAF_RS07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07030;old_locus_tag=RAF_pORF1266
NC_012634.1	Protein Homology	CDS	6236	6535	.	-	0	ID=cds-WP_012720131.1;Parent=gene-RAF_RS07030;Dbxref=GenBank:WP_012720131.1;Name=WP_012720131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012720131.1;locus_tag=RAF_RS07030;product=hypothetical protein;protein_id=WP_012720131.1;transl_table=11
NC_012634.1	RefSeq	gene	7097	7255	.	-	.	ID=gene-RAF_RS09100;Name=RAF_RS09100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09100
NC_012634.1	GeneMarkS-2+	CDS	7097	7255	.	-	0	ID=cds-WP_158299176.1;Parent=gene-RAF_RS09100;Dbxref=GenBank:WP_158299176.1;Name=WP_158299176.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09100;product=hypothetical protein;protein_id=WP_158299176.1;transl_table=11
NC_012634.1	RefSeq	gene	7255	7626	.	-	.	ID=gene-RAF_RS07035;Name=RAF_RS07035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07035;old_locus_tag=RAF_pORF1267
NC_012634.1	Protein Homology	CDS	7255	7626	.	-	0	ID=cds-WP_012720132.1;Parent=gene-RAF_RS07035;Dbxref=GenBank:WP_012720132.1;Name=WP_012720132.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012720132.1;locus_tag=RAF_RS07035;product=hypothetical protein;protein_id=WP_012720132.1;transl_table=11
NC_012634.1	RefSeq	gene	7776	10421	.	-	.	ID=gene-RAF_RS10220;Name=RAF_RS10220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS10220;old_locus_tag=RAF_pORF1268
NC_012634.1	Protein Homology	CDS	7776	10421	.	-	0	ID=cds-WP_012720133.1;Parent=gene-RAF_RS10220;Dbxref=GenBank:WP_012720133.1;Name=WP_012720133.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012720133.1;locus_tag=RAF_RS10220;product=autotransporter domain-containing protein;protein_id=WP_012720133.1;transl_table=11
NC_012634.1	RefSeq	gene	10574	11047	.	+	.	ID=gene-RAF_RS07045;Name=RAF_RS07045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07045;old_locus_tag=RAF_pORF1269
NC_012634.1	Protein Homology	CDS	10574	11047	.	+	0	ID=cds-WP_012720134.1;Parent=gene-RAF_RS07045;Dbxref=GenBank:WP_012720134.1;Name=WP_012720134.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012720134.1;locus_tag=RAF_RS07045;product=helix-turn-helix transcriptional regulator;protein_id=WP_012720134.1;transl_table=11
NC_012634.1	RefSeq	gene	11059	11292	.	-	.	ID=gene-RAF_RS09010;Name=RAF_RS09010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS09010
NC_012634.1	GeneMarkS-2+	CDS	11059	11292	.	-	0	ID=cds-WP_148206986.1;Parent=gene-RAF_RS09010;Dbxref=GenBank:WP_148206986.1;Name=WP_148206986.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=RAF_RS09010;product=hypothetical protein;protein_id=WP_148206986.1;transl_table=11
NC_012634.1	RefSeq	gene	11231	11902	.	-	.	ID=gene-RAF_RS07050;Name=RAF_RS07050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07050;old_locus_tag=RAF_pORF1270
NC_012634.1	Protein Homology	CDS	11231	11902	.	-	0	ID=cds-WP_012720135.1;Parent=gene-RAF_RS07050;Dbxref=GenBank:WP_012720135.1;Name=WP_012720135.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012720135.1;locus_tag=RAF_RS07050;product=ParA family protein;protein_id=WP_012720135.1;transl_table=11
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