##gff-version 3
#!gff-spec-version 1.21
#!processor NCBI annotwriter
#!genome-build ASM48773v1
#!genome-build-accession NCBI_Assembly:GCF_000487735.1
#!annotation-date 04/18/2025 09:36:45
#!annotation-source NCBI RefSeq GCF_000487735.1-RS_2025_04_18
##sequence-region NZ_APAH01000001.1 1 1014
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000001.1	RefSeq	region	1	1014	.	+	.	ID=NZ_APAH01000001.1:1..1014;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000001.1	RefSeq	pseudogene	1	99	.	+	.	ID=gene-CFSAN001082_RS49140;Name=CFSAN001082_RS49140;end_range=99,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49140;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000001.1	Protein Homology	CDS	1	99	.	+	0	ID=cds-CFSAN001082_RS49140;Parent=gene-CFSAN001082_RS49140;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=99,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459289.1;locus_tag=CFSAN001082_RS49140;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000001.1	RefSeq	gene	112	480	.	+	.	ID=gene-CFSAN001082_RS49100;Name=CFSAN001082_RS49100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49100;old_locus_tag=CFSAN001082_00005
NZ_APAH01000001.1	Protein Homology	CDS	112	480	.	+	0	ID=cds-WP_424815832.1;Parent=gene-CFSAN001082_RS49100;Dbxref=GenBank:WP_424815832.1;Name=WP_424815832.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025771.6;locus_tag=CFSAN001082_RS49100;product=HNH endonuclease;protein_id=WP_424815832.1;transl_table=11
NZ_APAH01000001.1	RefSeq	gene	494	1014	.	+	.	ID=gene-CFSAN001082_RS24135;Name=CFSAN001082_RS24135;end_range=1014,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24135;old_locus_tag=CFSAN001082_00010;partial=true
NZ_APAH01000001.1	Protein Homology	CDS	494	1014	.	+	0	ID=cds-WP_023203424.1;Parent=gene-CFSAN001082_RS24135;Dbxref=GenBank:WP_023203424.1;Name=WP_023203424.1;Ontology_term=GO:0042546;end_range=1014,.;gbkey=CDS;go_process=cell wall biogenesis|0042546||IEA;inference=COORDINATES: protein motif:HMM:NF020904.6;locus_tag=CFSAN001082_RS24135;partial=true;product=SMI1/KNR4 family protein;protein_id=WP_023203424.1;transl_table=11
##sequence-region NZ_APAH01000002.1 1 24859
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000002.1	RefSeq	region	1	24859	.	+	.	ID=NZ_APAH01000002.1:1..24859;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000002.1	RefSeq	gene	1	806	.	+	.	ID=gene-CFSAN001082_RS24140;Name=CFSAN001082_RS24140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24140;old_locus_tag=CFSAN001082_00015;partial=true;start_range=.,1
NZ_APAH01000002.1	Protein Homology	CDS	1	806	.	+	2	ID=cds-WP_023253689.1;Parent=gene-CFSAN001082_RS24140;Dbxref=GenBank:WP_023253689.1;Name=WP_023253689.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506006.1;locus_tag=CFSAN001082_RS24140;partial=true;product=LysR substrate-binding domain-containing protein;protein_id=WP_023253689.1;start_range=.,1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	972	2207	.	+	.	ID=gene-CFSAN001082_RS24145;Name=CFSAN001082_RS24145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24145;old_locus_tag=CFSAN001082_00020
NZ_APAH01000002.1	Protein Homology	CDS	972	2207	.	+	0	ID=cds-WP_000118137.1;Parent=gene-CFSAN001082_RS24145;Dbxref=GenBank:WP_000118137.1;Name=WP_000118137.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459597.1;locus_tag=CFSAN001082_RS24145;product=phosphoadenosine phosphosulfate reductase;protein_id=WP_000118137.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	2180	2797	.	+	.	ID=gene-CFSAN001082_RS24150;Name=CFSAN001082_RS24150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24150;old_locus_tag=CFSAN001082_00025
NZ_APAH01000002.1	Protein Homology	CDS	2180	2797	.	+	0	ID=cds-WP_001164755.1;Parent=gene-CFSAN001082_RS24150;Dbxref=GenBank:WP_001164755.1;Name=WP_001164755.1;Ontology_term=GO:0071453,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=cellular response to oxygen levels|0071453||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459596.1;locus_tag=CFSAN001082_RS24150;product=IbrB-like domain-containing protein;protein_id=WP_001164755.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	2798	3958	.	-	.	ID=gene-CFSAN001082_RS24155;Name=CFSAN001082_RS24155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24155;old_locus_tag=CFSAN001082_00030
NZ_APAH01000002.1	Protein Homology	CDS	2798	3958	.	-	0	ID=cds-WP_023253690.1;Parent=gene-CFSAN001082_RS24155;Dbxref=GenBank:WP_023253690.1;Name=WP_023253690.1;Ontology_term=GO:0008483,GO:0016740;gbkey=CDS;go_function=transaminase activity|0008483||IEA,transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459595.1;locus_tag=CFSAN001082_RS24155;product=pyridoxal phosphate-dependent aminotransferase;protein_id=WP_023253690.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	4085	5173	.	+	.	ID=gene-CFSAN001082_RS24160;Name=CFSAN001082_RS24160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24160;old_locus_tag=CFSAN001082_00035
NZ_APAH01000002.1	Protein Homology	CDS	4085	5173	.	+	0	ID=cds-WP_023253691.1;Parent=gene-CFSAN001082_RS24160;Dbxref=GenBank:WP_023253691.1;Name=WP_023253691.1;Ontology_term=GO:0016491,GO:0046872;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459594.1;locus_tag=CFSAN001082_RS24160;product=oxidoreductase;protein_id=WP_023253691.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	5209	5406	.	-	.	ID=gene-CFSAN001082_RS24165;Name=CFSAN001082_RS24165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24165;old_locus_tag=CFSAN001082_00040
NZ_APAH01000002.1	Protein Homology	CDS	5209	5406	.	-	0	ID=cds-WP_000460619.1;Parent=gene-CFSAN001082_RS24165;Dbxref=GenBank:WP_000460619.1;Name=WP_000460619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904950.1;locus_tag=CFSAN001082_RS24165;product=YbdD/YjiX family protein;protein_id=WP_000460619.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	5470	7575	.	-	.	ID=gene-CFSAN001082_RS24170;Name=cstA;gbkey=Gene;gene=cstA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24170;old_locus_tag=CFSAN001082_00045
NZ_APAH01000002.1	Protein Homology	CDS	5470	7575	.	-	0	ID=cds-WP_001043108.1;Parent=gene-CFSAN001082_RS24170;Dbxref=GenBank:WP_001043108.1;Name=WP_001043108.1;Ontology_term=GO:0009267;gbkey=CDS;gene=cstA;go_process=cellular response to starvation|0009267||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459592.1;locus_tag=CFSAN001082_RS24170;product=pyruvate/proton symporter CstA;protein_id=WP_001043108.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	7757	8170	.	-	.	ID=gene-CFSAN001082_RS24175;Name=entH;gbkey=Gene;gene=entH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24175;old_locus_tag=CFSAN001082_00050
NZ_APAH01000002.1	Protein Homology	CDS	7757	8170	.	-	0	ID=cds-WP_000637966.1;Parent=gene-CFSAN001082_RS24175;Dbxref=GenBank:WP_000637966.1;Name=WP_000637966.1;gbkey=CDS;gene=entH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459591.1;locus_tag=CFSAN001082_RS24175;product=proofreading thioesterase EntH;protein_id=WP_000637966.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	8173	8928	.	-	.	ID=gene-CFSAN001082_RS24180;Name=entA;gbkey=Gene;gene=entA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24180;old_locus_tag=CFSAN001082_00055
NZ_APAH01000002.1	Protein Homology	CDS	8173	8928	.	-	0	ID=cds-WP_023253692.1;Parent=gene-CFSAN001082_RS24180;Dbxref=GenBank:WP_023253692.1;Name=WP_023253692.1;gbkey=CDS;gene=entA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459590.1;locus_tag=CFSAN001082_RS24180;product=2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase EntA;protein_id=WP_023253692.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	8928	9785	.	-	.	ID=gene-CFSAN001082_RS24185;Name=CFSAN001082_RS24185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24185;old_locus_tag=CFSAN001082_00060
NZ_APAH01000002.1	Protein Homology	CDS	8928	9785	.	-	0	ID=cds-WP_001007166.1;Parent=gene-CFSAN001082_RS24185;Dbxref=GenBank:WP_001007166.1;Name=WP_001007166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459589.1;locus_tag=CFSAN001082_RS24185;product=isochorismatase;protein_id=WP_001007166.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	9799	11409	.	-	.	ID=gene-CFSAN001082_RS24190;Name=entE;gbkey=Gene;gene=entE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24190;old_locus_tag=CFSAN001082_00065
NZ_APAH01000002.1	Protein Homology	CDS	9799	11409	.	-	0	ID=cds-WP_023253693.1;Parent=gene-CFSAN001082_RS24190;Dbxref=GenBank:WP_023253693.1;Name=WP_023253693.1;gbkey=CDS;gene=entE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459588.1;locus_tag=CFSAN001082_RS24190;product=(2%2C3-dihydroxybenzoyl)adenylate synthase EntE;protein_id=WP_023253693.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	11419	12594	.	-	.	ID=gene-CFSAN001082_RS24195;Name=entC;gbkey=Gene;gene=entC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24195;old_locus_tag=CFSAN001082_00070
NZ_APAH01000002.1	Protein Homology	CDS	11419	12594	.	-	0	ID=cds-WP_023253694.1;Parent=gene-CFSAN001082_RS24195;Dbxref=GenBank:WP_023253694.1;Name=WP_023253694.1;Ontology_term=GO:0008909;gbkey=CDS;gene=entC;go_function=isochorismate synthase activity|0008909||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459587.1;locus_tag=CFSAN001082_RS24195;product=isochorismate synthase EntC;protein_id=WP_023253694.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	12902	13858	.	+	.	ID=gene-CFSAN001082_RS24200;Name=fepB;gbkey=Gene;gene=fepB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24200;old_locus_tag=CFSAN001082_00075
NZ_APAH01000002.1	Protein Homology	CDS	12902	13858	.	+	0	ID=cds-WP_023242591.1;Parent=gene-CFSAN001082_RS24200;Dbxref=GenBank:WP_023242591.1;Name=WP_023242591.1;gbkey=CDS;gene=fepB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459586.1;locus_tag=CFSAN001082_RS24200;product=Fe2+-enterobactin ABC transporter substrate-binding protein;protein_id=WP_023242591.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	13921	15165	.	-	.	ID=gene-CFSAN001082_RS24205;Name=entS;gbkey=Gene;gene=entS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24205;old_locus_tag=CFSAN001082_00080
NZ_APAH01000002.1	Protein Homology	CDS	13921	15165	.	-	0	ID=cds-WP_023253695.1;Parent=gene-CFSAN001082_RS24205;Dbxref=GenBank:WP_023253695.1;Name=WP_023253695.1;Ontology_term=GO:0042930,GO:0042931;gbkey=CDS;gene=entS;go_function=enterobactin transmembrane transporter activity|0042931||IEA;go_process=enterobactin transport|0042930||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459585.1;locus_tag=CFSAN001082_RS24205;product=enterobactin transporter EntS;protein_id=WP_023253695.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	15276	16283	.	+	.	ID=gene-CFSAN001082_RS24210;Name=fepD;gbkey=Gene;gene=fepD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24210;old_locus_tag=CFSAN001082_00085
NZ_APAH01000002.1	Protein Homology	CDS	15276	16283	.	+	0	ID=cds-WP_001277879.1;Parent=gene-CFSAN001082_RS24210;Dbxref=GenBank:WP_001277879.1;Name=WP_001277879.1;Ontology_term=GO:0022857,GO:0016020;gbkey=CDS;gene=fepD;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459584.1;locus_tag=CFSAN001082_RS24210;product=Fe(3+)-siderophore ABC transporter permease;protein_id=WP_001277879.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	16283	17272	.	+	.	ID=gene-CFSAN001082_RS24215;Name=fepG;gbkey=Gene;gene=fepG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24215;old_locus_tag=CFSAN001082_00090
NZ_APAH01000002.1	Protein Homology	CDS	16283	17272	.	+	0	ID=cds-WP_000480064.1;Parent=gene-CFSAN001082_RS24215;Dbxref=GenBank:WP_000480064.1;Name=WP_000480064.1;Ontology_term=GO:0022857;gbkey=CDS;gene=fepG;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459583.1;locus_tag=CFSAN001082_RS24215;product=iron-enterobactin ABC transporter permease;protein_id=WP_000480064.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	17269	18063	.	+	.	ID=gene-CFSAN001082_RS24220;Name=fepC;gbkey=Gene;gene=fepC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24220;old_locus_tag=CFSAN001082_00095
NZ_APAH01000002.1	Protein Homology	CDS	17269	18063	.	+	0	ID=cds-WP_023253696.1;Parent=gene-CFSAN001082_RS24220;Dbxref=GenBank:WP_023253696.1;Name=WP_023253696.1;Ontology_term=GO:0005524;gbkey=CDS;gene=fepC;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459582.1;locus_tag=CFSAN001082_RS24220;product=iron-enterobactin ABC transporter ATP-binding protein;protein_id=WP_023253696.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	18116	19252	.	-	.	ID=gene-CFSAN001082_RS24225;Name=wzz(fepE);gbkey=Gene;gene=wzz(fepE);gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24225;old_locus_tag=CFSAN001082_00100
NZ_APAH01000002.1	Protein Homology	CDS	18116	19252	.	-	0	ID=cds-WP_001139579.1;Parent=gene-CFSAN001082_RS24225;Dbxref=GenBank:WP_001139579.1;Name=WP_001139579.1;Ontology_term=GO:0009103,GO:0016020;gbkey=CDS;gene=wzz(fepE);go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459581.1;locus_tag=CFSAN001082_RS24225;product=LPS O-antigen length regulator Wzz(fepE);protein_id=WP_001139579.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	19502	23386	.	-	.	ID=gene-CFSAN001082_RS24230;Name=entF;gbkey=Gene;gene=entF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24230;old_locus_tag=CFSAN001082_00105
NZ_APAH01000002.1	Protein Homology	CDS	19502	23386	.	-	0	ID=cds-WP_023253697.1;Parent=gene-CFSAN001082_RS24230;Dbxref=GenBank:WP_023253697.1;Name=WP_023253697.1;Ontology_term=GO:0009058,GO:0003824,GO:0031177;gbkey=CDS;gene=entF;go_function=catalytic activity|0003824||IEA,phosphopantetheine binding|0031177||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459580.1;locus_tag=CFSAN001082_RS24230;product=enterobactin non-ribosomal peptide synthetase EntF;protein_id=WP_023253697.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	23383	23601	.	-	.	ID=gene-CFSAN001082_RS24235;Name=CFSAN001082_RS24235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24235;old_locus_tag=CFSAN001082_00110
NZ_APAH01000002.1	Protein Homology	CDS	23383	23601	.	-	0	ID=cds-WP_000396008.1;Parent=gene-CFSAN001082_RS24235;Dbxref=GenBank:WP_000396008.1;Name=WP_000396008.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459579.1;locus_tag=CFSAN001082_RS24235;product=MbtH family protein;protein_id=WP_000396008.1;transl_table=11
NZ_APAH01000002.1	RefSeq	gene	23632	24846	.	-	.	ID=gene-CFSAN001082_RS24240;Name=fes;gbkey=Gene;gene=fes;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24240;old_locus_tag=CFSAN001082_00115
NZ_APAH01000002.1	Protein Homology	CDS	23632	24846	.	-	0	ID=cds-WP_000656594.1;Parent=gene-CFSAN001082_RS24240;Dbxref=GenBank:WP_000656594.1;Name=WP_000656594.1;Ontology_term=GO:0005506,GO:0008849;gbkey=CDS;gene=fes;go_function=iron ion binding|0005506||IEA,enterochelin esterase activity|0008849||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459578.1;locus_tag=CFSAN001082_RS24240;product=enterochelin esterase;protein_id=WP_000656594.1;transl_table=11
##sequence-region NZ_APAH01000003.1 1 37773
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000003.1	RefSeq	region	1	37773	.	+	.	ID=NZ_APAH01000003.1:1..37773;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000003.1	RefSeq	gene	126	923	.	-	.	ID=gene-CFSAN001082_RS24245;Name=CFSAN001082_RS24245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24245;old_locus_tag=CFSAN001082_00120
NZ_APAH01000003.1	Protein Homology	CDS	126	923	.	-	0	ID=cds-WP_000480268.1;Parent=gene-CFSAN001082_RS24245;Dbxref=GenBank:WP_000480268.1;Name=WP_000480268.1;Ontology_term=GO:0016788;gbkey=CDS;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460172.1;locus_tag=CFSAN001082_RS24245;product=metal-dependent hydrolase;protein_id=WP_000480268.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	934	1938	.	-	.	ID=gene-CFSAN001082_RS24250;Name=holB;gbkey=Gene;gene=holB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24250;old_locus_tag=CFSAN001082_00125
NZ_APAH01000003.1	Protein Homology	CDS	934	1938	.	-	0	ID=cds-WP_000872453.1;Parent=gene-CFSAN001082_RS24250;Dbxref=GenBank:WP_000872453.1;Name=WP_000872453.1;Ontology_term=GO:0006260,GO:0003887,GO:0008408;gbkey=CDS;gene=holB;go_function=DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460171.1;locus_tag=CFSAN001082_RS24250;product=DNA polymerase III subunit delta';protein_id=WP_000872453.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	1935	2576	.	-	.	ID=gene-CFSAN001082_RS24255;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24255;old_locus_tag=CFSAN001082_00130
NZ_APAH01000003.1	Protein Homology	CDS	1935	2576	.	-	0	ID=cds-WP_000535396.1;Parent=gene-CFSAN001082_RS24255;Dbxref=GenBank:WP_000535396.1;Name=WP_000535396.1;Ontology_term=GO:0006233,GO:0004798,GO:0005524;gbkey=CDS;gene=tmk;go_function=dTMP kinase activity|0004798||IEA,ATP binding|0005524||IEA;go_process=dTDP biosynthetic process|0006233||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460170.1;locus_tag=CFSAN001082_RS24255;product=dTMP kinase;protein_id=WP_000535396.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	2566	3588	.	-	.	ID=gene-CFSAN001082_RS24260;Name=yceG;gbkey=Gene;gene=yceG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24260;old_locus_tag=CFSAN001082_00135
NZ_APAH01000003.1	Protein Homology	CDS	2566	3588	.	-	0	ID=cds-WP_000736459.1;Parent=gene-CFSAN001082_RS24260;Dbxref=GenBank:WP_000736459.1;Name=WP_000736459.1;gbkey=CDS;gene=yceG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460169.1;locus_tag=CFSAN001082_RS24260;product=cell division protein YceG;protein_id=WP_000736459.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	3591	4400	.	-	.	ID=gene-CFSAN001082_RS24265;Name=pabC;gbkey=Gene;gene=pabC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24265;old_locus_tag=CFSAN001082_00140
NZ_APAH01000003.1	Protein Homology	CDS	3591	4400	.	-	0	ID=cds-WP_023253698.1;Parent=gene-CFSAN001082_RS24265;Dbxref=GenBank:WP_023253698.1;Name=WP_023253698.1;Ontology_term=GO:0046656,GO:0008696,GO:0030170;gbkey=CDS;gene=pabC;go_function=4-amino-4-deoxychorismate lyase activity|0008696||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=folic acid biosynthetic process|0046656||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460168.1;locus_tag=CFSAN001082_RS24265;product=aminodeoxychorismate lyase;protein_id=WP_023253698.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	4524	5765	.	-	.	ID=gene-CFSAN001082_RS24270;Name=fabF;gbkey=Gene;gene=fabF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24270;old_locus_tag=CFSAN001082_00145
NZ_APAH01000003.1	Protein Homology	CDS	4524	5765	.	-	0	ID=cds-WP_000044664.1;Parent=gene-CFSAN001082_RS24270;Dbxref=GenBank:WP_000044664.1;Name=WP_000044664.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabF;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460167.1;locus_tag=CFSAN001082_RS24270;product=beta-ketoacyl-ACP synthase II;protein_id=WP_000044664.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	5851	6087	.	-	.	ID=gene-CFSAN001082_RS24275;Name=acpP;gbkey=Gene;gene=acpP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24275;old_locus_tag=CFSAN001082_00150
NZ_APAH01000003.1	Protein Homology	CDS	5851	6087	.	-	0	ID=cds-WP_000103754.1;Parent=gene-CFSAN001082_RS24275;Dbxref=GenBank:WP_000103754.1;Name=WP_000103754.1;Ontology_term=GO:0006633;gbkey=CDS;gene=acpP;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016535861.1;locus_tag=CFSAN001082_RS24275;product=acyl carrier protein;protein_id=WP_000103754.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	6243	6977	.	-	.	ID=gene-CFSAN001082_RS24280;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24280;old_locus_tag=CFSAN001082_00155
NZ_APAH01000003.1	Protein Homology	CDS	6243	6977	.	-	0	ID=cds-WP_000007236.1;Parent=gene-CFSAN001082_RS24280;Dbxref=GenBank:WP_000007236.1;Name=WP_000007236.1;Ontology_term=GO:0006633,GO:0004316,GO:0051287;gbkey=CDS;gene=fabG;go_function=3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|0004316||IEA,NAD binding|0051287||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129017.1;locus_tag=CFSAN001082_RS24280;product=3-oxoacyl-ACP reductase FabG;protein_id=WP_000007236.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	6990	7919	.	-	.	ID=gene-CFSAN001082_RS24285;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24285;old_locus_tag=CFSAN001082_00160
NZ_APAH01000003.1	Protein Homology	CDS	6990	7919	.	-	0	ID=cds-WP_001529843.1;Parent=gene-CFSAN001082_RS24285;Dbxref=GenBank:WP_001529843.1;Name=WP_001529843.1;Ontology_term=GO:0006633,GO:0004314;gbkey=CDS;gene=fabD;go_function=[acyl-carrier-protein] S-malonyltransferase activity|0004314||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460164.1;locus_tag=CFSAN001082_RS24285;product=ACP S-malonyltransferase;protein_id=WP_001529843.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	7935	8888	.	-	.	ID=gene-CFSAN001082_RS24290;Name=fabH;gbkey=Gene;gene=fabH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24290;old_locus_tag=CFSAN001082_00165
NZ_APAH01000003.1	Protein Homology	CDS	7935	8888	.	-	0	ID=cds-WP_000288148.1;Parent=gene-CFSAN001082_RS24290;Dbxref=GenBank:WP_000288148.1;Name=WP_000288148.1;gbkey=CDS;gene=fabH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129019.1;locus_tag=CFSAN001082_RS24290;product=beta-ketoacyl-ACP synthase III;protein_id=WP_000288148.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	8968	10047	.	-	.	ID=gene-CFSAN001082_RS24295;Name=plsX;gbkey=Gene;gene=plsX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24295;old_locus_tag=CFSAN001082_00170
NZ_APAH01000003.1	Protein Homology	CDS	8968	10047	.	-	0	ID=cds-WP_001518286.1;Parent=gene-CFSAN001082_RS24295;Dbxref=GenBank:WP_001518286.1;Name=WP_001518286.1;Ontology_term=GO:0008610,GO:0043811;gbkey=CDS;gene=plsX;go_function=phosphate:acyl-[acyl carrier protein] acyltransferase activity|0043811||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460162.1;locus_tag=CFSAN001082_RS24295;product=phosphate acyltransferase PlsX;protein_id=WP_001518286.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	10181	10354	.	-	.	ID=gene-CFSAN001082_RS24300;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24300;old_locus_tag=CFSAN001082_00175
NZ_APAH01000003.1	Protein Homology	CDS	10181	10354	.	-	0	ID=cds-WP_000290727.1;Parent=gene-CFSAN001082_RS24300;Dbxref=GenBank:WP_000290727.1;Name=WP_000290727.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rpmF;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125993.1;locus_tag=CFSAN001082_RS24300;product=50S ribosomal protein L32;protein_id=WP_000290727.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	10406	10927	.	-	.	ID=gene-CFSAN001082_RS24305;Name=yceD;gbkey=Gene;gene=yceD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24305;old_locus_tag=CFSAN001082_00180
NZ_APAH01000003.1	Protein Homology	CDS	10406	10927	.	-	0	ID=cds-WP_001174492.1;Parent=gene-CFSAN001082_RS24305;Dbxref=GenBank:WP_001174492.1;Name=WP_001174492.1;gbkey=CDS;gene=yceD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001174481.1;locus_tag=CFSAN001082_RS24305;product=23S rRNA accumulation protein YceD;protein_id=WP_001174492.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	11125	11709	.	+	.	ID=gene-CFSAN001082_RS24310;Name=CFSAN001082_RS24310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24310;old_locus_tag=CFSAN001082_00185
NZ_APAH01000003.1	Protein Homology	CDS	11125	11709	.	+	0	ID=cds-WP_001137607.1;Parent=gene-CFSAN001082_RS24310;Dbxref=GenBank:WP_001137607.1;Name=WP_001137607.1;Ontology_term=GO:0009117,GO:0009146,GO:0000166,GO:0047429;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,nucleoside triphosphate diphosphatase activity|0047429||IEA;go_process=nucleotide metabolic process|0009117||IEA,purine nucleoside triphosphate catabolic process|0009146||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460159.1;locus_tag=CFSAN001082_RS24310;product=Maf family protein;protein_id=WP_001137607.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	11781	12005	.	-	.	ID=gene-CFSAN001082_RS24315;Name=CFSAN001082_RS24315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24315;old_locus_tag=CFSAN001082_00190
NZ_APAH01000003.1	GeneMarkS-2+	CDS	11781	12005	.	-	0	ID=cds-WP_000528430.1;Parent=gene-CFSAN001082_RS24315;Dbxref=GenBank:WP_000528430.1;Name=WP_000528430.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS24315;product=hypothetical protein;protein_id=WP_000528430.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	12208	12951	.	-	.	ID=gene-CFSAN001082_RS24320;Name=CFSAN001082_RS24320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24320;old_locus_tag=CFSAN001082_00195
NZ_APAH01000003.1	Protein Homology	CDS	12208	12951	.	-	0	ID=cds-WP_077911117.1;Parent=gene-CFSAN001082_RS24320;Dbxref=GenBank:WP_077911117.1;Name=WP_077911117.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460158.1;locus_tag=CFSAN001082_RS24320;product=DUF3053 domain-containing protein;protein_id=WP_077911117.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	13107	14066	.	-	.	ID=gene-CFSAN001082_RS24325;Name=rluC;gbkey=Gene;gene=rluC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24325;old_locus_tag=CFSAN001082_00200
NZ_APAH01000003.1	Protein Homology	CDS	13107	14066	.	-	0	ID=cds-WP_023253699.1;Parent=gene-CFSAN001082_RS24325;Dbxref=GenBank:WP_023253699.1;Name=WP_023253699.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=rluC;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460157.1;locus_tag=CFSAN001082_RS24325;product=23S rRNA pseudouridine(955/2504/2580) synthase RluC;protein_id=WP_023253699.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	14640	17843	.	+	.	ID=gene-CFSAN001082_RS24330;Name=rne;gbkey=Gene;gene=rne;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24330;old_locus_tag=CFSAN001082_00205
NZ_APAH01000003.1	Protein Homology	CDS	14640	17843	.	+	0	ID=cds-WP_023253700.1;Parent=gene-CFSAN001082_RS24330;Dbxref=GenBank:WP_023253700.1;Name=WP_023253700.1;Ontology_term=GO:0006396,GO:0003723,GO:0008995;gbkey=CDS;gene=rne;go_function=RNA binding|0003723||IEA,ribonuclease E activity|0008995||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460156.1;locus_tag=CFSAN001082_RS24330;product=ribonuclease E;protein_id=WP_023253700.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	18101	19054	.	-	.	ID=gene-CFSAN001082_RS24335;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24335;old_locus_tag=CFSAN001082_00210
NZ_APAH01000003.1	Protein Homology	CDS	18101	19054	.	-	0	ID=cds-WP_001223032.1;Parent=gene-CFSAN001082_RS24335;Dbxref=GenBank:WP_001223032.1;Name=WP_001223032.1;Ontology_term=GO:0001539,GO:0005198,GO:0009424;gbkey=CDS;gene=flgL;go_component=bacterial-type flagellum hook|0009424||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460155.1;locus_tag=CFSAN001082_RS24335;product=flagellar hook-associated protein FlgL;protein_id=WP_001223032.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	19069	20730	.	-	.	ID=gene-CFSAN001082_RS24340;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24340;old_locus_tag=CFSAN001082_00215
NZ_APAH01000003.1	Protein Homology	CDS	19069	20730	.	-	0	ID=cds-WP_000096425.1;Parent=gene-CFSAN001082_RS24340;Dbxref=GenBank:WP_000096425.1;Name=WP_000096425.1;Ontology_term=GO:0044780,GO:0005198,GO:0009424;gbkey=CDS;gene=flgK;go_component=bacterial-type flagellum hook|0009424||IEA;go_function=structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460154.1;locus_tag=CFSAN001082_RS24340;product=flagellar hook-associated protein FlgK;protein_id=WP_000096425.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	20795	21745	.	-	.	ID=gene-CFSAN001082_RS24345;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24345;old_locus_tag=CFSAN001082_00220
NZ_APAH01000003.1	Protein Homology	CDS	20795	21745	.	-	0	ID=cds-WP_000578685.1;Parent=gene-CFSAN001082_RS24345;Dbxref=GenBank:WP_000578685.1;Name=WP_000578685.1;Ontology_term=GO:0044780,GO:0016798;gbkey=CDS;gene=flgJ;go_function=hydrolase activity%2C acting on glycosyl bonds|0016798||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460153.1;locus_tag=CFSAN001082_RS24345;product=flagellar assembly peptidoglycan hydrolase FlgJ;protein_id=WP_000578685.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	21745	22842	.	-	.	ID=gene-CFSAN001082_RS24350;Name=CFSAN001082_RS24350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24350;old_locus_tag=CFSAN001082_00225
NZ_APAH01000003.1	Protein Homology	CDS	21745	22842	.	-	0	ID=cds-WP_001518955.1;Parent=gene-CFSAN001082_RS24350;Dbxref=GenBank:WP_001518955.1;Name=WP_001518955.1;Ontology_term=GO:0071973,GO:0005198,GO:0009428,GO:0030288;gbkey=CDS;go_component=bacterial-type flagellum basal body%2C distal rod%2C P ring|0009428||IEA,outer membrane-bounded periplasmic space|0030288||IEA;go_function=structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460152.1;locus_tag=CFSAN001082_RS24350;product=flagellar basal body P-ring protein FlgI;protein_id=WP_001518955.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	22854	23552	.	-	.	ID=gene-CFSAN001082_RS24355;Name=flgH;gbkey=Gene;gene=flgH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24355;old_locus_tag=CFSAN001082_00230
NZ_APAH01000003.1	Protein Homology	CDS	22854	23552	.	-	0	ID=cds-WP_001174897.1;Parent=gene-CFSAN001082_RS24355;Dbxref=GenBank:WP_001174897.1;Name=WP_001174897.1;Ontology_term=GO:0071973,GO:0003774,GO:0009427;gbkey=CDS;gene=flgH;go_component=bacterial-type flagellum basal body%2C distal rod%2C L ring|0009427||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460151.1;locus_tag=CFSAN001082_RS24355;product=flagellar basal body L-ring protein FlgH;protein_id=WP_001174897.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	23606	24388	.	-	.	ID=gene-CFSAN001082_RS24360;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24360;old_locus_tag=CFSAN001082_00235
NZ_APAH01000003.1	Protein Homology	CDS	23606	24388	.	-	0	ID=cds-WP_000625851.1;Parent=gene-CFSAN001082_RS24360;Dbxref=GenBank:WP_000625851.1;Name=WP_000625851.1;Ontology_term=GO:0071973,GO:0009426;gbkey=CDS;gene=flgG;go_component=bacterial-type flagellum basal body%2C distal rod|0009426||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006819466.1;locus_tag=CFSAN001082_RS24360;product=flagellar basal-body rod protein FlgG;protein_id=WP_000625851.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	24402	25157	.	-	.	ID=gene-CFSAN001082_RS24365;Name=CFSAN001082_RS24365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24365;old_locus_tag=CFSAN001082_00240
NZ_APAH01000003.1	Protein Homology	CDS	24402	25157	.	-	0	ID=cds-WP_000349278.1;Parent=gene-CFSAN001082_RS24365;Dbxref=GenBank:WP_000349278.1;Name=WP_000349278.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460149.1;locus_tag=CFSAN001082_RS24365;product=flagellar basal body rod protein FlgF;protein_id=WP_000349278.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	25178	26395	.	-	.	ID=gene-CFSAN001082_RS24370;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24370;old_locus_tag=CFSAN001082_00245
NZ_APAH01000003.1	Protein Homology	CDS	25178	26395	.	-	0	ID=cds-WP_017440965.1;Parent=gene-CFSAN001082_RS24370;Dbxref=GenBank:WP_017440965.1;Name=WP_017440965.1;gbkey=CDS;gene=flgE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460148.1;locus_tag=CFSAN001082_RS24370;product=flagellar hook protein FlgE;protein_id=WP_017440965.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	26422	27120	.	-	.	ID=gene-CFSAN001082_RS24375;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24375;old_locus_tag=CFSAN001082_00250
NZ_APAH01000003.1	Protein Homology	CDS	26422	27120	.	-	0	ID=cds-WP_000020450.1;Parent=gene-CFSAN001082_RS24375;Dbxref=GenBank:WP_000020450.1;Name=WP_000020450.1;gbkey=CDS;gene=flgD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460147.1;locus_tag=CFSAN001082_RS24375;product=flagellar hook assembly protein FlgD;protein_id=WP_000020450.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	27132	27536	.	-	.	ID=gene-CFSAN001082_RS24380;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24380;old_locus_tag=CFSAN001082_00255
NZ_APAH01000003.1	Protein Homology	CDS	27132	27536	.	-	0	ID=cds-WP_001196448.1;Parent=gene-CFSAN001082_RS24380;Dbxref=GenBank:WP_001196448.1;Name=WP_001196448.1;Ontology_term=GO:0071973,GO:0030694;gbkey=CDS;gene=flgC;go_component=bacterial-type flagellum basal body%2C rod|0030694||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001740734.1;locus_tag=CFSAN001082_RS24380;product=flagellar basal body rod protein FlgC;protein_id=WP_001196448.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	27540	27956	.	-	.	ID=gene-CFSAN001082_RS24385;Name=flgB;gbkey=Gene;gene=flgB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24385;old_locus_tag=CFSAN001082_00260
NZ_APAH01000003.1	Protein Homology	CDS	27540	27956	.	-	0	ID=cds-WP_000887043.1;Parent=gene-CFSAN001082_RS24385;Dbxref=GenBank:WP_000887043.1;Name=WP_000887043.1;Ontology_term=GO:0071973,GO:0030694;gbkey=CDS;gene=flgB;go_component=bacterial-type flagellum basal body%2C rod|0030694||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460145.1;locus_tag=CFSAN001082_RS24385;product=flagellar basal body rod protein FlgB;protein_id=WP_000887043.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	28113	28772	.	+	.	ID=gene-CFSAN001082_RS24390;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24390;old_locus_tag=CFSAN001082_00265
NZ_APAH01000003.1	Protein Homology	CDS	28113	28772	.	+	0	ID=cds-WP_023205473.1;Parent=gene-CFSAN001082_RS24390;Dbxref=GenBank:WP_023205473.1;Name=WP_023205473.1;Ontology_term=GO:0001539,GO:0005198,GO:0009428;gbkey=CDS;gene=flgA;go_component=bacterial-type flagellum basal body%2C distal rod%2C P ring|0009428||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460144.1;locus_tag=CFSAN001082_RS24390;product=flagellar basal body P-ring formation chaperone FlgA;protein_id=WP_023205473.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	28864	29157	.	+	.	ID=gene-CFSAN001082_RS24395;Name=flgM;gbkey=Gene;gene=flgM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24395;old_locus_tag=CFSAN001082_00270
NZ_APAH01000003.1	Protein Homology	CDS	28864	29157	.	+	0	ID=cds-WP_000020893.1;Parent=gene-CFSAN001082_RS24395;Dbxref=GenBank:WP_000020893.1;Name=WP_000020893.1;Ontology_term=GO:0045892;gbkey=CDS;gene=flgM;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460143.1;locus_tag=CFSAN001082_RS24395;product=flagellar biosynthesis anti-sigma factor FlgM;protein_id=WP_000020893.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	29162	29584	.	+	.	ID=gene-CFSAN001082_RS24400;Name=flgN;gbkey=Gene;gene=flgN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24400;old_locus_tag=CFSAN001082_00275
NZ_APAH01000003.1	Protein Homology	CDS	29162	29584	.	+	0	ID=cds-WP_023253701.1;Parent=gene-CFSAN001082_RS24400;Dbxref=GenBank:WP_023253701.1;Name=WP_023253701.1;gbkey=CDS;gene=flgN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460142.1;locus_tag=CFSAN001082_RS24400;product=flagella biosynthesis chaperone FlgN;protein_id=WP_023253701.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	29666	31201	.	-	.	ID=gene-CFSAN001082_RS24405;Name=murJ;gbkey=Gene;gene=murJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24405;old_locus_tag=CFSAN001082_00280
NZ_APAH01000003.1	Protein Homology	CDS	29666	31201	.	-	0	ID=cds-WP_001537775.1;Parent=gene-CFSAN001082_RS24405;Dbxref=GenBank:WP_001537775.1;Name=WP_001537775.1;Ontology_term=GO:0009252,GO:0034204;gbkey=CDS;gene=murJ;go_process=peptidoglycan biosynthetic process|0009252||IEA,lipid translocation|0034204||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005226258.1;locus_tag=CFSAN001082_RS24405;product=murein biosynthesis integral membrane protein MurJ;protein_id=WP_001537775.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	31505	32428	.	-	.	ID=gene-CFSAN001082_RS24410;Name=CFSAN001082_RS24410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24410;old_locus_tag=CFSAN001082_00285
NZ_APAH01000003.1	Protein Homology	CDS	31505	32428	.	-	0	ID=cds-WP_023253702.1;Parent=gene-CFSAN001082_RS24410;Dbxref=GenBank:WP_023253702.1;Name=WP_023253702.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460140.1;locus_tag=CFSAN001082_RS24410;product=Gfo/Idh/MocA family protein;protein_id=WP_023253702.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	32430	33077	.	-	.	ID=gene-CFSAN001082_RS24415;Name=CFSAN001082_RS24415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24415;old_locus_tag=CFSAN001082_00290
NZ_APAH01000003.1	Protein Homology	CDS	32430	33077	.	-	0	ID=cds-WP_023253703.1;Parent=gene-CFSAN001082_RS24415;Dbxref=GenBank:WP_023253703.1;Name=WP_023253703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460139.1;locus_tag=CFSAN001082_RS24415;product=YceH family protein;protein_id=WP_023253703.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	33113	33697	.	-	.	ID=gene-CFSAN001082_RS24420;Name=rimJ;gbkey=Gene;gene=rimJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24420;old_locus_tag=CFSAN001082_00295
NZ_APAH01000003.1	Protein Homology	CDS	33113	33697	.	-	0	ID=cds-WP_000468204.1;Parent=gene-CFSAN001082_RS24420;Dbxref=GenBank:WP_000468204.1;Name=WP_000468204.1;Ontology_term=GO:0008080;gbkey=CDS;gene=rimJ;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460138.1;locus_tag=CFSAN001082_RS24420;product=ribosomal protein S5-alanine N-acetyltransferase;protein_id=WP_000468204.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	33934	35142	.	+	.	ID=gene-CFSAN001082_RS24425;Name=mdtH;gbkey=Gene;gene=mdtH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24425;old_locus_tag=CFSAN001082_00300
NZ_APAH01000003.1	Protein Homology	CDS	33934	35142	.	+	0	ID=cds-WP_000092178.1;Parent=gene-CFSAN001082_RS24425;Dbxref=GenBank:WP_000092178.1;Name=WP_000092178.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=mdtH;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460137.1;locus_tag=CFSAN001082_RS24425;product=multidrug efflux MFS transporter MdtH;protein_id=WP_000092178.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	35206	35853	.	+	.	ID=gene-CFSAN001082_RS24430;Name=grxB;gbkey=Gene;gene=grxB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24430;old_locus_tag=CFSAN001082_00305
NZ_APAH01000003.1	Protein Homology	CDS	35206	35853	.	+	0	ID=cds-WP_000780893.1;Parent=gene-CFSAN001082_RS24430;Dbxref=GenBank:WP_000780893.1;Name=WP_000780893.1;Ontology_term=GO:0006749,GO:0004362,GO:0005515;gbkey=CDS;gene=grxB;go_function=glutathione-disulfide reductase (NADPH) activity|0004362||IEA,protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460136.1;locus_tag=CFSAN001082_RS24430;product=glutaredoxin 2;protein_id=WP_000780893.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	35978	36538	.	+	.	ID=gene-CFSAN001082_RS24435;Name=CFSAN001082_RS24435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24435;old_locus_tag=CFSAN001082_00310
NZ_APAH01000003.1	Protein Homology	CDS	35978	36538	.	+	0	ID=cds-WP_000713054.1;Parent=gene-CFSAN001082_RS24435;Dbxref=GenBank:WP_000713054.1;Name=WP_000713054.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460135.1;locus_tag=CFSAN001082_RS24435;product=lipoprotein;protein_id=WP_000713054.1;transl_table=11
NZ_APAH01000003.1	RefSeq	gene	36642	37688	.	+	.	ID=gene-CFSAN001082_RS24440;Name=pyrC;gbkey=Gene;gene=pyrC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24440;old_locus_tag=CFSAN001082_00315
NZ_APAH01000003.1	Protein Homology	CDS	36642	37688	.	+	0	ID=cds-WP_023203491.1;Parent=gene-CFSAN001082_RS24440;Dbxref=GenBank:WP_023203491.1;Name=WP_023203491.1;Ontology_term=GO:0019856,GO:0004151;gbkey=CDS;gene=pyrC;go_function=dihydroorotase activity|0004151||IEA;go_process=pyrimidine nucleobase biosynthetic process|0019856||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460134.1;locus_tag=CFSAN001082_RS24440;product=dihydroorotase;protein_id=WP_023203491.1;transl_table=11
##sequence-region NZ_APAH01000004.1 1 22002
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000004.1	RefSeq	region	1	22002	.	+	.	ID=NZ_APAH01000004.1:1..22002;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000004.1	RefSeq	gene	1	548	.	+	.	ID=gene-CFSAN001082_RS24445;Name=pagL;gbkey=Gene;gene=pagL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24445;old_locus_tag=CFSAN001082_00320;partial=true;start_range=.,1
NZ_APAH01000004.1	Protein Homology	CDS	1	548	.	+	2	ID=cds-WP_023253704.1;Parent=gene-CFSAN001082_RS24445;Dbxref=GenBank:WP_023253704.1;Name=WP_023253704.1;gbkey=CDS;gene=pagL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461188.1;locus_tag=CFSAN001082_RS24445;partial=true;product=lipid A 3-O-deacylase PagL;protein_id=WP_023253704.1;start_range=.,1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	740	928	.	-	.	ID=gene-CFSAN001082_RS0122735;Name=CFSAN001082_RS0122735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0122735;old_locus_tag=CFSAN001082_00325
NZ_APAH01000004.1	Protein Homology	CDS	740	928	.	-	0	ID=cds-WP_023242741.1;Parent=gene-CFSAN001082_RS0122735;Dbxref=GenBank:WP_023242741.1;Name=WP_023242741.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461187.1;locus_tag=CFSAN001082_RS0122735;product=virulence protein;protein_id=WP_023242741.1;transl_table=11
NZ_APAH01000004.1	RefSeq	pseudogene	922	1014	.	-	.	ID=gene-CFSAN001082_RS48660;Name=CFSAN001082_RS48660;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48660;partial=true;pseudo=true;start_range=.,922
NZ_APAH01000004.1	Protein Homology	CDS	922	1014	.	-	0	ID=cds-CFSAN001082_RS48660;Parent=gene-CFSAN001082_RS48660;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460028.1;locus_tag=CFSAN001082_RS48660;partial=true;product=hypothetical protein;pseudo=true;start_range=.,922;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	970	1046	.	-	.	ID=gene-CFSAN001082_RS24450;Name=CFSAN001082_RS24450;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24450;old_locus_tag=CFSAN001082_t00427
NZ_APAH01000004.1	tRNAscan-SE	tRNA	970	1046	.	-	.	ID=rna-CFSAN001082_RS24450;Parent=gene-CFSAN001082_RS24450;anticodon=(pos:complement(1010..1012));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24450;product=tRNA-Pro
NZ_APAH01000004.1	tRNAscan-SE	exon	970	1046	.	-	.	ID=exon-CFSAN001082_RS24450-1;Parent=rna-CFSAN001082_RS24450;anticodon=(pos:complement(1010..1012));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24450;product=tRNA-Pro
NZ_APAH01000004.1	RefSeq	gene	1120	2880	.	-	.	ID=gene-CFSAN001082_RS24455;Name=yejM;gbkey=Gene;gene=yejM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24455;old_locus_tag=CFSAN001082_00330
NZ_APAH01000004.1	Protein Homology	CDS	1120	2880	.	-	0	ID=cds-WP_023253706.1;Parent=gene-CFSAN001082_RS24455;Dbxref=GenBank:WP_023253706.1;Name=WP_023253706.1;Ontology_term=GO:0008484;gbkey=CDS;gene=yejM;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461172.1;locus_tag=CFSAN001082_RS24455;product=LPS biosynthesis-modulating metalloenzyme YejM;protein_id=WP_023253706.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	2912	3139	.	-	.	ID=gene-CFSAN001082_RS24460;Name=CFSAN001082_RS24460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24460;old_locus_tag=CFSAN001082_00335
NZ_APAH01000004.1	Protein Homology	CDS	2912	3139	.	-	0	ID=cds-WP_001135904.1;Parent=gene-CFSAN001082_RS24460;Dbxref=GenBank:WP_001135904.1;Name=WP_001135904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461171.1;locus_tag=CFSAN001082_RS24460;product=YejL family protein;protein_id=WP_001135904.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	3319	4326	.	+	.	ID=gene-CFSAN001082_RS24465;Name=yejK;gbkey=Gene;gene=yejK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24465;old_locus_tag=CFSAN001082_00340
NZ_APAH01000004.1	Protein Homology	CDS	3319	4326	.	+	0	ID=cds-WP_023253707.1;Parent=gene-CFSAN001082_RS24465;Dbxref=GenBank:WP_023253707.1;Name=WP_023253707.1;Ontology_term=GO:0009295;gbkey=CDS;gene=yejK;go_component=nucleoid|0009295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461170.1;locus_tag=CFSAN001082_RS24465;product=nucleoid-associated protein YejK;protein_id=WP_023253707.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	4354	4974	.	+	.	ID=gene-CFSAN001082_RS24470;Name=CFSAN001082_RS24470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24470;old_locus_tag=CFSAN001082_00345
NZ_APAH01000004.1	Protein Homology	CDS	4354	4974	.	+	0	ID=cds-WP_000033429.1;Parent=gene-CFSAN001082_RS24470;Dbxref=GenBank:WP_000033429.1;Name=WP_000033429.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461169.1;locus_tag=CFSAN001082_RS24470;product=hypothetical protein;protein_id=WP_000033429.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	5083	5367	.	-	.	ID=gene-CFSAN001082_RS24475;Name=rplY;gbkey=Gene;gene=rplY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24475;old_locus_tag=CFSAN001082_00350
NZ_APAH01000004.1	Protein Homology	CDS	5083	5367	.	-	0	ID=cds-WP_000494192.1;Parent=gene-CFSAN001082_RS24475;Dbxref=GenBank:WP_000494192.1;Name=WP_000494192.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplY;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000494192.1;locus_tag=CFSAN001082_RS24475;product=50S ribosomal protein L25;protein_id=WP_000494192.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	5492	7252	.	-	.	ID=gene-CFSAN001082_RS24480;Name=CFSAN001082_RS24480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24480;old_locus_tag=CFSAN001082_00355
NZ_APAH01000004.1	Protein Homology	CDS	5492	7252	.	-	0	ID=cds-WP_000578121.1;Parent=gene-CFSAN001082_RS24480;Dbxref=GenBank:WP_000578121.1;Name=WP_000578121.1;Ontology_term=GO:0003676,GO:0004386,GO:0005524,GO:0016887;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,helicase activity|0004386||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461167.1;locus_tag=CFSAN001082_RS24480;product=DEAD/DEAH box helicase;protein_id=WP_000578121.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	7404	8099	.	+	.	ID=gene-CFSAN001082_RS24485;Name=rsuA;gbkey=Gene;gene=rsuA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24485;old_locus_tag=CFSAN001082_00360
NZ_APAH01000004.1	Protein Homology	CDS	7404	8099	.	+	0	ID=cds-WP_001234836.1;Parent=gene-CFSAN001082_RS24485;Dbxref=GenBank:WP_001234836.1;Name=WP_001234836.1;gbkey=CDS;gene=rsuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461166.1;locus_tag=CFSAN001082_RS24485;product=16S rRNA pseudouridine(516) synthase RsuA;protein_id=WP_001234836.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	8127	9317	.	+	.	ID=gene-CFSAN001082_RS24490;Name=CFSAN001082_RS24490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24490;old_locus_tag=CFSAN001082_00365
NZ_APAH01000004.1	Protein Homology	CDS	8127	9317	.	+	0	ID=cds-WP_023253708.1;Parent=gene-CFSAN001082_RS24490;Dbxref=GenBank:WP_023253708.1;Name=WP_023253708.1;Ontology_term=GO:0042908,GO:1990961,GO:0042910,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic transport|0042908||IEA,xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461165.1;locus_tag=CFSAN001082_RS24490;product=Bcr/CflA family multidrug efflux MFS transporter;protein_id=WP_023253708.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	9708	10052	.	+	.	ID=gene-CFSAN001082_RS24495;Name=CFSAN001082_RS24495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24495;old_locus_tag=CFSAN001082_00370
NZ_APAH01000004.1	Protein Homology	CDS	9708	10052	.	+	0	ID=cds-WP_001094639.1;Parent=gene-CFSAN001082_RS24495;Dbxref=GenBank:WP_001094639.1;Name=WP_001094639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461164.1;locus_tag=CFSAN001082_RS24495;product=YejG family protein;protein_id=WP_001094639.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	10056	11645	.	-	.	ID=gene-CFSAN001082_RS24500;Name=yejF;gbkey=Gene;gene=yejF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24500;old_locus_tag=CFSAN001082_00375
NZ_APAH01000004.1	Protein Homology	CDS	10056	11645	.	-	0	ID=cds-WP_023253709.1;Parent=gene-CFSAN001082_RS24500;Dbxref=GenBank:WP_023253709.1;Name=WP_023253709.1;Ontology_term=GO:0006810,GO:0000166,GO:0005524;gbkey=CDS;gene=yejF;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461163.1;locus_tag=CFSAN001082_RS24500;product=microcin C ABC transporter ATP-binding protein YejF;protein_id=WP_023253709.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	11647	12672	.	-	.	ID=gene-CFSAN001082_RS24505;Name=CFSAN001082_RS24505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24505;old_locus_tag=CFSAN001082_00380
NZ_APAH01000004.1	Protein Homology	CDS	11647	12672	.	-	0	ID=cds-WP_001137761.1;Parent=gene-CFSAN001082_RS24505;Dbxref=GenBank:WP_001137761.1;Name=WP_001137761.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461162.1;locus_tag=CFSAN001082_RS24505;product=ABC transporter permease;protein_id=WP_001137761.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	12672	13766	.	-	.	ID=gene-CFSAN001082_RS24510;Name=CFSAN001082_RS24510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24510;old_locus_tag=CFSAN001082_00385
NZ_APAH01000004.1	Protein Homology	CDS	12672	13766	.	-	0	ID=cds-WP_023253710.1;Parent=gene-CFSAN001082_RS24510;Dbxref=GenBank:WP_023253710.1;Name=WP_023253710.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461161.1;locus_tag=CFSAN001082_RS24510;product=microcin C ABC transporter permease YejB;protein_id=WP_023253710.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	13776	15581	.	-	.	ID=gene-CFSAN001082_RS24515;Name=CFSAN001082_RS24515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24515;old_locus_tag=CFSAN001082_00390
NZ_APAH01000004.1	Protein Homology	CDS	13776	15581	.	-	0	ID=cds-WP_023253711.1;Parent=gene-CFSAN001082_RS24515;Dbxref=GenBank:WP_023253711.1;Name=WP_023253711.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461160.1;locus_tag=CFSAN001082_RS24515;product=extracellular solute-binding protein;protein_id=WP_023253711.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	15688	17244	.	-	.	ID=gene-CFSAN001082_RS24520;Name=CFSAN001082_RS24520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24520;old_locus_tag=CFSAN001082_00395
NZ_APAH01000004.1	Protein Homology	CDS	15688	17244	.	-	0	ID=cds-WP_023205322.1;Parent=gene-CFSAN001082_RS24520;Dbxref=GenBank:WP_023205322.1;Name=WP_023205322.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461159.1;locus_tag=CFSAN001082_RS24520;product=cyclic di-GMP phosphodiesterase;protein_id=WP_023205322.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	17570	18142	.	-	.	ID=gene-CFSAN001082_RS24525;Name=mepS;gbkey=Gene;gene=mepS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24525;old_locus_tag=CFSAN001082_00400
NZ_APAH01000004.1	Protein Homology	CDS	17570	18142	.	-	0	ID=cds-WP_000241015.1;Parent=gene-CFSAN001082_RS24525;Dbxref=GenBank:WP_000241015.1;Name=WP_000241015.1;gbkey=CDS;gene=mepS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461158.1;locus_tag=CFSAN001082_RS24525;product=bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase;protein_id=WP_000241015.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	18556	19275	.	-	.	ID=gene-CFSAN001082_RS24530;Name=CFSAN001082_RS24530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24530;old_locus_tag=CFSAN001082_00405
NZ_APAH01000004.1	Protein Homology	CDS	18556	19275	.	-	0	ID=cds-WP_000178095.1;Parent=gene-CFSAN001082_RS24530;Dbxref=GenBank:WP_000178095.1;Name=WP_000178095.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461157.1;locus_tag=CFSAN001082_RS24530;product=phosphatase PAP2 family protein;protein_id=WP_000178095.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	19305	20291	.	-	.	ID=gene-CFSAN001082_RS24535;Name=CFSAN001082_RS24535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24535;old_locus_tag=CFSAN001082_00410
NZ_APAH01000004.1	Protein Homology	CDS	19305	20291	.	-	0	ID=cds-WP_000169351.1;Parent=gene-CFSAN001082_RS24535;Dbxref=GenBank:WP_000169351.1;Name=WP_000169351.1;Ontology_term=GO:0003924,GO:0005525,GO:0046872;gbkey=CDS;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461156.1;locus_tag=CFSAN001082_RS24535;product=CobW family GTP-binding protein;protein_id=WP_000169351.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	20503	21075	.	-	.	ID=gene-CFSAN001082_RS24540;Name=yeiP;gbkey=Gene;gene=yeiP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24540;old_locus_tag=CFSAN001082_00415
NZ_APAH01000004.1	Protein Homology	CDS	20503	21075	.	-	0	ID=cds-WP_023253712.1;Parent=gene-CFSAN001082_RS24540;Dbxref=GenBank:WP_023253712.1;Name=WP_023253712.1;Ontology_term=GO:0006414,GO:0043043,GO:0003746;gbkey=CDS;gene=yeiP;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA,peptide biosynthetic process|0043043||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007750416.1;locus_tag=CFSAN001082_RS24540;product=elongation factor P-like protein YeiP;protein_id=WP_023253712.1;transl_table=11
NZ_APAH01000004.1	RefSeq	gene	21400	21654	.	+	.	ID=gene-CFSAN001082_RS24545;Name=CFSAN001082_RS24545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24545;old_locus_tag=CFSAN001082_00420
NZ_APAH01000004.1	Protein Homology	CDS	21400	21654	.	+	0	ID=cds-WP_023209193.1;Parent=gene-CFSAN001082_RS24545;Dbxref=GenBank:WP_023209193.1;Name=WP_023209193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001675765.1;locus_tag=CFSAN001082_RS24545;product=zinc/iron-chelating domain-containing protein;protein_id=WP_023209193.1;transl_table=11
##sequence-region NZ_APAH01000005.1 1 2701
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000005.1	RefSeq	region	1	2701	.	+	.	ID=NZ_APAH01000005.1:1..2701;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000005.1	RefSeq	gene	137	1606	.	-	.	ID=gene-CFSAN001082_RS24550;Name=lysP;gbkey=Gene;gene=lysP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24550;old_locus_tag=CFSAN001082_00427
NZ_APAH01000005.1	Protein Homology	CDS	137	1606	.	-	0	ID=cds-WP_000534999.1;Parent=gene-CFSAN001082_RS24550;Dbxref=GenBank:WP_000534999.1;Name=WP_000534999.1;gbkey=CDS;gene=lysP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461145.1;locus_tag=CFSAN001082_RS24550;product=lysine-specific permease;protein_id=WP_000534999.1;transl_table=11
NZ_APAH01000005.1	RefSeq	gene	1796	2659	.	-	.	ID=gene-CFSAN001082_RS24555;Name=yieE;gbkey=Gene;gene=yieE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24555;old_locus_tag=CFSAN001082_00432
NZ_APAH01000005.1	Protein Homology	CDS	1796	2659	.	-	0	ID=cds-WP_000548316.1;Parent=gene-CFSAN001082_RS24555;Dbxref=GenBank:WP_000548316.1;Name=WP_000548316.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yieE;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461146.1;locus_tag=CFSAN001082_RS24555;product=DNA-binding transcriptional regulator YeiE;protein_id=WP_000548316.1;transl_table=11
##sequence-region NZ_APAH01000006.1 1 19717
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000006.1	RefSeq	region	1	19717	.	+	.	ID=NZ_APAH01000006.1:1..19717;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000006.1	RefSeq	gene	119	1909	.	+	.	ID=gene-CFSAN001082_RS24560;Name=CFSAN001082_RS24560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24560;old_locus_tag=CFSAN001082_00437
NZ_APAH01000006.1	Protein Homology	CDS	119	1909	.	+	0	ID=cds-WP_023253713.1;Parent=gene-CFSAN001082_RS24560;Dbxref=GenBank:WP_023253713.1;Name=WP_023253713.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461257.1;locus_tag=CFSAN001082_RS24560;product=vWA domain-containing protein;protein_id=WP_023253713.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	1950	2951	.	-	.	ID=gene-CFSAN001082_RS24565;Name=CFSAN001082_RS24565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24565;old_locus_tag=CFSAN001082_00442
NZ_APAH01000006.1	Protein Homology	CDS	1950	2951	.	-	0	ID=cds-WP_000368558.1;Parent=gene-CFSAN001082_RS24565;Dbxref=GenBank:WP_000368558.1;Name=WP_000368558.1;Ontology_term=GO:0000160,GO:0006935,GO:0000156;gbkey=CDS;go_function=phosphorelay response regulator activity|0000156||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,chemotaxis|0006935||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461256.1;locus_tag=CFSAN001082_RS24565;product=chemotaxis protein;protein_id=WP_000368558.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	3017	3934	.	-	.	ID=gene-CFSAN001082_RS24570;Name=rbn;gbkey=Gene;gene=rbn;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24570;old_locus_tag=CFSAN001082_00447
NZ_APAH01000006.1	Protein Homology	CDS	3017	3934	.	-	0	ID=cds-WP_000419093.1;Parent=gene-CFSAN001082_RS24570;Dbxref=GenBank:WP_000419093.1;Name=WP_000419093.1;Ontology_term=GO:0042780,GO:0016891;gbkey=CDS;gene=rbn;go_function=RNA endonuclease activity%2C producing 5'-phosphomonoesters|0016891||IEA;go_process=tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461255.1;locus_tag=CFSAN001082_RS24570;product=ribonuclease BN;protein_id=WP_000419093.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	3995	4456	.	+	.	ID=gene-CFSAN001082_RS24575;Name=CFSAN001082_RS24575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24575;old_locus_tag=CFSAN001082_00452
NZ_APAH01000006.1	Protein Homology	CDS	3995	4456	.	+	0	ID=cds-WP_000568159.1;Parent=gene-CFSAN001082_RS24575;Dbxref=GenBank:WP_000568159.1;Name=WP_000568159.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461254.1;locus_tag=CFSAN001082_RS24575;product=GNAT family N-acetyltransferase;protein_id=WP_000568159.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	4511	4816	.	+	.	ID=gene-CFSAN001082_RS24580;Name=elaB;gbkey=Gene;gene=elaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24580;old_locus_tag=CFSAN001082_00457
NZ_APAH01000006.1	Protein Homology	CDS	4511	4816	.	+	0	ID=cds-WP_001522308.1;Parent=gene-CFSAN001082_RS24580;Dbxref=GenBank:WP_001522308.1;Name=WP_001522308.1;gbkey=CDS;gene=elaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311181.1;locus_tag=CFSAN001082_RS24580;product=stress response protein ElaB;protein_id=WP_001522308.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	4917	6212	.	+	.	ID=gene-CFSAN001082_RS24585;Name=menF;gbkey=Gene;gene=menF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24585;old_locus_tag=CFSAN001082_00462
NZ_APAH01000006.1	Protein Homology	CDS	4917	6212	.	+	0	ID=cds-WP_000555674.1;Parent=gene-CFSAN001082_RS24585;Dbxref=GenBank:WP_000555674.1;Name=WP_000555674.1;Ontology_term=GO:0008909;gbkey=CDS;gene=menF;go_function=isochorismate synthase activity|0008909||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461252.1;locus_tag=CFSAN001082_RS24585;product=isochorismate synthase MenF;protein_id=WP_000555674.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	6298	7968	.	+	.	ID=gene-CFSAN001082_RS24590;Name=menD;gbkey=Gene;gene=menD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24590;old_locus_tag=CFSAN001082_00467
NZ_APAH01000006.1	Protein Homology	CDS	6298	7968	.	+	0	ID=cds-WP_000116391.1;Parent=gene-CFSAN001082_RS24590;Dbxref=GenBank:WP_000116391.1;Name=WP_000116391.1;Ontology_term=GO:0009234,GO:0030976,GO:0070204;gbkey=CDS;gene=menD;go_function=thiamine pyrophosphate binding|0030976||IEA,2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity|0070204||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461251.1;locus_tag=CFSAN001082_RS24590;product=2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase;protein_id=WP_000116391.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	7965	8723	.	+	.	ID=gene-CFSAN001082_RS24595;Name=menH;gbkey=Gene;gene=menH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24595;old_locus_tag=CFSAN001082_00472
NZ_APAH01000006.1	Protein Homology	CDS	7965	8723	.	+	0	ID=cds-WP_000979137.1;Parent=gene-CFSAN001082_RS24595;Dbxref=GenBank:WP_000979137.1;Name=WP_000979137.1;Ontology_term=GO:0009234,GO:0070205;gbkey=CDS;gene=menH;go_function=2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase activity|0070205||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461250.1;locus_tag=CFSAN001082_RS24595;product=2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase;protein_id=WP_000979137.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	8738	9595	.	+	.	ID=gene-CFSAN001082_RS24600;Name=menB;gbkey=Gene;gene=menB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24600;old_locus_tag=CFSAN001082_00477
NZ_APAH01000006.1	Protein Homology	CDS	8738	9595	.	+	0	ID=cds-WP_000640013.1;Parent=gene-CFSAN001082_RS24600;Dbxref=GenBank:WP_000640013.1;Name=WP_000640013.1;Ontology_term=GO:0009234,GO:0008935;gbkey=CDS;gene=menB;go_function=1%2C4-dihydroxy-2-naphthoyl-CoA synthase activity|0008935||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001641973.1;locus_tag=CFSAN001082_RS24600;product=1%2C4-dihydroxy-2-naphthoyl-CoA synthase;protein_id=WP_000640013.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	9595	10557	.	+	.	ID=gene-CFSAN001082_RS24605;Name=menC;gbkey=Gene;gene=menC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24605;old_locus_tag=CFSAN001082_00482
NZ_APAH01000006.1	Protein Homology	CDS	9595	10557	.	+	0	ID=cds-WP_023253714.1;Parent=gene-CFSAN001082_RS24605;Dbxref=GenBank:WP_023253714.1;Name=WP_023253714.1;Ontology_term=GO:0009234,GO:0000287,GO:0016836;gbkey=CDS;gene=menC;go_function=magnesium ion binding|0000287||IEA,hydro-lyase activity|0016836||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461248.1;locus_tag=CFSAN001082_RS24605;product=o-succinylbenzoate synthase;protein_id=WP_023253714.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	10554	11921	.	+	.	ID=gene-CFSAN001082_RS24610;Name=menE;gbkey=Gene;gene=menE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24610;old_locus_tag=CFSAN001082_00487
NZ_APAH01000006.1	Protein Homology	CDS	10554	11921	.	+	0	ID=cds-WP_023253715.1;Parent=gene-CFSAN001082_RS24610;Dbxref=GenBank:WP_023253715.1;Name=WP_023253715.1;Ontology_term=GO:0009234,GO:0005524,GO:0008756;gbkey=CDS;gene=menE;go_function=ATP binding|0005524||IEA,o-succinylbenzoate-CoA ligase activity|0008756||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461247.1;locus_tag=CFSAN001082_RS24610;product=o-succinylbenzoate--CoA ligase;protein_id=WP_023253715.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	12019	12276	.	+	.	ID=gene-CFSAN001082_RS24615;Name=pmrD;gbkey=Gene;gene=pmrD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24615;old_locus_tag=CFSAN001082_00492
NZ_APAH01000006.1	Protein Homology	CDS	12019	12276	.	+	0	ID=cds-WP_000455132.1;Parent=gene-CFSAN001082_RS24615;Dbxref=GenBank:WP_000455132.1;Name=WP_000455132.1;gbkey=CDS;gene=pmrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461246.1;locus_tag=CFSAN001082_RS24615;product=signal transduction protein PmrD;protein_id=WP_000455132.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	12271	12648	.	-	.	ID=gene-CFSAN001082_RS24620;Name=arnF;gbkey=Gene;gene=arnF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24620;old_locus_tag=CFSAN001082_00497
NZ_APAH01000006.1	Protein Homology	CDS	12271	12648	.	-	0	ID=cds-WP_000538692.1;Parent=gene-CFSAN001082_RS24620;Dbxref=GenBank:WP_000538692.1;Name=WP_000538692.1;gbkey=CDS;gene=arnF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461245.1;locus_tag=CFSAN001082_RS24620;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF;protein_id=WP_000538692.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	12648	12983	.	-	.	ID=gene-CFSAN001082_RS24625;Name=arnE;gbkey=Gene;gene=arnE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24625;old_locus_tag=CFSAN001082_00502
NZ_APAH01000006.1	Protein Homology	CDS	12648	12983	.	-	0	ID=cds-WP_000580685.1;Parent=gene-CFSAN001082_RS24625;Dbxref=GenBank:WP_000580685.1;Name=WP_000580685.1;gbkey=CDS;gene=arnE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461244.1;locus_tag=CFSAN001082_RS24625;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE;protein_id=WP_000580685.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	12980	14626	.	-	.	ID=gene-CFSAN001082_RS24630;Name=arnT;gbkey=Gene;gene=arnT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24630;old_locus_tag=CFSAN001082_00507
NZ_APAH01000006.1	Protein Homology	CDS	12980	14626	.	-	0	ID=cds-WP_031612568.1;Parent=gene-CFSAN001082_RS24630;Dbxref=GenBank:WP_031612568.1;Name=WP_031612568.1;Ontology_term=GO:0006493,GO:0000030,GO:0016763,GO:0016020;gbkey=CDS;gene=arnT;go_component=membrane|0016020||IEA;go_function=mannosyltransferase activity|0000030||IEA,pentosyltransferase activity|0016763||IEA;go_process=protein O-linked glycosylation|0006493||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461243.1;locus_tag=CFSAN001082_RS24630;product=lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase;protein_id=WP_031612568.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	14623	15522	.	-	.	ID=gene-CFSAN001082_RS24635;Name=arnD;gbkey=Gene;gene=arnD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24635;old_locus_tag=CFSAN001082_00512
NZ_APAH01000006.1	Protein Homology	CDS	14623	15522	.	-	0	ID=cds-WP_000169760.1;Parent=gene-CFSAN001082_RS24635;Dbxref=GenBank:WP_000169760.1;Name=WP_000169760.1;Ontology_term=GO:0016810;gbkey=CDS;gene=arnD;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461242.1;locus_tag=CFSAN001082_RS24635;product=4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase;protein_id=WP_000169760.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	15519	17501	.	-	.	ID=gene-CFSAN001082_RS24640;Name=arnA;gbkey=Gene;gene=arnA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24640;old_locus_tag=CFSAN001082_00517
NZ_APAH01000006.1	Protein Homology	CDS	15519	17501	.	-	0	ID=cds-WP_023253717.1;Parent=gene-CFSAN001082_RS24640;Dbxref=GenBank:WP_023253717.1;Name=WP_023253717.1;Ontology_term=GO:0009058,GO:0016742;gbkey=CDS;gene=arnA;go_function=hydroxymethyl-%2C formyl- and related transferase activity|0016742||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461241.1;locus_tag=CFSAN001082_RS24640;product=bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA;protein_id=WP_023253717.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	17498	18481	.	-	.	ID=gene-CFSAN001082_RS24645;Name=arnC;gbkey=Gene;gene=arnC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24645;old_locus_tag=CFSAN001082_00522
NZ_APAH01000006.1	Protein Homology	CDS	17498	18481	.	-	0	ID=cds-WP_000458893.1;Parent=gene-CFSAN001082_RS24645;Dbxref=GenBank:WP_000458893.1;Name=WP_000458893.1;Ontology_term=GO:0016780;gbkey=CDS;gene=arnC;go_function=phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461240.1;locus_tag=CFSAN001082_RS24645;product=undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase;protein_id=WP_000458893.1;transl_table=11
NZ_APAH01000006.1	RefSeq	gene	18484	19623	.	-	.	ID=gene-CFSAN001082_RS24650;Name=arnB;gbkey=Gene;gene=arnB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24650;old_locus_tag=CFSAN001082_00527
NZ_APAH01000006.1	Protein Homology	CDS	18484	19623	.	-	0	ID=cds-WP_001279284.1;Parent=gene-CFSAN001082_RS24650;Dbxref=GenBank:WP_001279284.1;Name=WP_001279284.1;Ontology_term=GO:0008483;gbkey=CDS;gene=arnB;go_function=transaminase activity|0008483||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_024188371.1;locus_tag=CFSAN001082_RS24650;product=UDP-4-amino-4-deoxy-L-arabinose aminotransferase;protein_id=WP_001279284.1;transl_table=11
##sequence-region NZ_APAH01000007.1 1 31646
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000007.1	RefSeq	region	1	31646	.	+	.	ID=NZ_APAH01000007.1:1..31646;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000007.1	RefSeq	gene	93	800	.	+	.	ID=gene-CFSAN001082_RS24655;Name=CFSAN001082_RS24655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24655;old_locus_tag=CFSAN001082_00532
NZ_APAH01000007.1	Protein Homology	CDS	93	800	.	+	0	ID=cds-WP_023253719.1;Parent=gene-CFSAN001082_RS24655;Dbxref=GenBank:WP_023253719.1;Name=WP_023253719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459647.1;locus_tag=CFSAN001082_RS24655;product=DUF1266 domain-containing protein;protein_id=WP_023253719.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	797	2230	.	+	.	ID=gene-CFSAN001082_RS24660;Name=CFSAN001082_RS24660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24660;old_locus_tag=CFSAN001082_00537
NZ_APAH01000007.1	Protein Homology	CDS	797	2230	.	+	0	ID=cds-WP_023253720.1;Parent=gene-CFSAN001082_RS24660;Dbxref=GenBank:WP_023253720.1;Name=WP_023253720.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459648.1;locus_tag=CFSAN001082_RS24660;product=J domain-containing protein;protein_id=WP_023253720.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	2242	2937	.	+	.	ID=gene-CFSAN001082_RS24665;Name=CFSAN001082_RS24665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24665;old_locus_tag=CFSAN001082_00542
NZ_APAH01000007.1	Protein Homology	CDS	2242	2937	.	+	0	ID=cds-WP_000356624.1;Parent=gene-CFSAN001082_RS24665;Dbxref=GenBank:WP_000356624.1;Name=WP_000356624.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459649.1;locus_tag=CFSAN001082_RS24665;product=DUF1266 domain-containing protein;protein_id=WP_000356624.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	2934	4397	.	+	.	ID=gene-CFSAN001082_RS24670;Name=CFSAN001082_RS24670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24670;old_locus_tag=CFSAN001082_00547
NZ_APAH01000007.1	Protein Homology	CDS	2934	4397	.	+	0	ID=cds-WP_023253721.1;Parent=gene-CFSAN001082_RS24670;Dbxref=GenBank:WP_023253721.1;Name=WP_023253721.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459650.1;locus_tag=CFSAN001082_RS24670;product=J domain-containing protein;protein_id=WP_023253721.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	4419	6098	.	-	.	ID=gene-CFSAN001082_RS24675;Name=hscC;gbkey=Gene;gene=hscC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24675;old_locus_tag=CFSAN001082_00552
NZ_APAH01000007.1	Protein Homology	CDS	4419	6098	.	-	0	ID=cds-WP_023253722.1;Parent=gene-CFSAN001082_RS24675;Dbxref=GenBank:WP_023253722.1;Name=WP_023253722.1;gbkey=CDS;gene=hscC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459651.1;locus_tag=CFSAN001082_RS24675;product=molecular chaperone HscC;protein_id=WP_023253722.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	6174	7412	.	-	.	ID=gene-CFSAN001082_RS24680;Name=CFSAN001082_RS24680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24680;old_locus_tag=CFSAN001082_00557
NZ_APAH01000007.1	Protein Homology	CDS	6174	7412	.	-	0	ID=cds-WP_023253723.1;Parent=gene-CFSAN001082_RS24680;Dbxref=GenBank:WP_023253723.1;Name=WP_023253723.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459652.1;locus_tag=CFSAN001082_RS24680;product=hypothetical protein;protein_id=WP_023253723.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	7444	8379	.	-	.	ID=gene-CFSAN001082_RS24685;Name=rihA;gbkey=Gene;gene=rihA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24685;old_locus_tag=CFSAN001082_00562
NZ_APAH01000007.1	Protein Homology	CDS	7444	8379	.	-	0	ID=cds-WP_023253724.1;Parent=gene-CFSAN001082_RS24685;Dbxref=GenBank:WP_023253724.1;Name=WP_023253724.1;Ontology_term=GO:0006206,GO:0050263;gbkey=CDS;gene=rihA;go_function=ribosylpyrimidine nucleosidase activity|0050263||IEA;go_process=pyrimidine nucleobase metabolic process|0006206||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459653.1;locus_tag=CFSAN001082_RS24685;product=pyrimidine-specific ribonucleoside hydrolase RihA;protein_id=WP_023253724.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	8496	9221	.	-	.	ID=gene-CFSAN001082_RS24690;Name=gltL;gbkey=Gene;gene=gltL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24690;old_locus_tag=CFSAN001082_00567
NZ_APAH01000007.1	Protein Homology	CDS	8496	9221	.	-	0	ID=cds-WP_000631369.1;Parent=gene-CFSAN001082_RS24690;Dbxref=GenBank:WP_000631369.1;Name=WP_000631369.1;gbkey=CDS;gene=gltL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020245804.1;locus_tag=CFSAN001082_RS24690;product=glutamate/aspartate ABC transporter ATP-binding protein GltL;protein_id=WP_000631369.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	9221	9895	.	-	.	ID=gene-CFSAN001082_RS24695;Name=gltK;gbkey=Gene;gene=gltK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24695;old_locus_tag=CFSAN001082_00572
NZ_APAH01000007.1	Protein Homology	CDS	9221	9895	.	-	0	ID=cds-WP_000272802.1;Parent=gene-CFSAN001082_RS24695;Dbxref=GenBank:WP_000272802.1;Name=WP_000272802.1;gbkey=CDS;gene=gltK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459655.1;locus_tag=CFSAN001082_RS24695;product=glutamate/aspartate ABC transporter permease GltK;protein_id=WP_000272802.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	9895	10635	.	-	.	ID=gene-CFSAN001082_RS24700;Name=gltJ;gbkey=Gene;gene=gltJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24700;old_locus_tag=CFSAN001082_00577
NZ_APAH01000007.1	Protein Homology	CDS	9895	10635	.	-	0	ID=cds-WP_000020930.1;Parent=gene-CFSAN001082_RS24700;Dbxref=GenBank:WP_000020930.1;Name=WP_000020930.1;gbkey=CDS;gene=gltJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459656.1;locus_tag=CFSAN001082_RS24700;product=glutamate/aspartate ABC transporter permease GltJ;protein_id=WP_000020930.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	10795	11703	.	-	.	ID=gene-CFSAN001082_RS24705;Name=CFSAN001082_RS24705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24705;old_locus_tag=CFSAN001082_00582
NZ_APAH01000007.1	Protein Homology	CDS	10795	11703	.	-	0	ID=cds-WP_001518176.1;Parent=gene-CFSAN001082_RS24705;Dbxref=GenBank:WP_001518176.1;Name=WP_001518176.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308721.1;locus_tag=CFSAN001082_RS24705;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_001518176.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	12058	13596	.	-	.	ID=gene-CFSAN001082_RS24710;Name=lnt;gbkey=Gene;gene=lnt;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24710;old_locus_tag=CFSAN001082_00587
NZ_APAH01000007.1	Protein Homology	CDS	12058	13596	.	-	0	ID=cds-WP_023253725.1;Parent=gene-CFSAN001082_RS24710;Dbxref=GenBank:WP_023253725.1;Name=WP_023253725.1;Ontology_term=GO:0042158,GO:0016410,GO:0016020;gbkey=CDS;gene=lnt;go_component=membrane|0016020||IEA;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipoprotein biosynthetic process|0042158||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459658.1;locus_tag=CFSAN001082_RS24710;product=apolipoprotein N-acyltransferase;protein_id=WP_023253725.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	13616	14494	.	-	.	ID=gene-CFSAN001082_RS24715;Name=corC;gbkey=Gene;gene=corC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24715;old_locus_tag=CFSAN001082_00592
NZ_APAH01000007.1	Protein Homology	CDS	13616	14494	.	-	0	ID=cds-WP_001278615.1;Parent=gene-CFSAN001082_RS24715;Dbxref=GenBank:WP_001278615.1;Name=WP_001278615.1;Note=CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter (CNNM) family%2C and was characterized as belonging to a set of three proteins%2C at least one of which must be present for CorA to function.;Ontology_term=GO:0050660;gbkey=CDS;gene=corC;go_function=flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459659.1;locus_tag=CFSAN001082_RS24715;product=CNNM family magnesium/cobalt transport protein CorC;protein_id=WP_001278615.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	14652	15125	.	-	.	ID=gene-CFSAN001082_RS24720;Name=ybeY;gbkey=Gene;gene=ybeY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24720;old_locus_tag=CFSAN001082_00597
NZ_APAH01000007.1	Protein Homology	CDS	14652	15125	.	-	0	ID=cds-WP_000084477.1;Parent=gene-CFSAN001082_RS24720;Dbxref=GenBank:WP_000084477.1;Name=WP_000084477.1;Ontology_term=GO:0042254,GO:0004540,GO:0046872;gbkey=CDS;gene=ybeY;go_function=RNA nuclease activity|0004540||IEA,metal ion binding|0046872||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459660.1;locus_tag=CFSAN001082_RS24720;product=rRNA maturation RNase YbeY;protein_id=WP_000084477.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	15122	16168	.	-	.	ID=gene-CFSAN001082_RS24725;Name=CFSAN001082_RS24725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24725;old_locus_tag=CFSAN001082_00602
NZ_APAH01000007.1	Protein Homology	CDS	15122	16168	.	-	0	ID=cds-WP_001018045.1;Parent=gene-CFSAN001082_RS24725;Dbxref=GenBank:WP_001018045.1;Name=WP_001018045.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225825.1;locus_tag=CFSAN001082_RS24725;product=PhoH family protein;protein_id=WP_001018045.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	16373	17797	.	-	.	ID=gene-CFSAN001082_RS24730;Name=miaB;gbkey=Gene;gene=miaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24730;old_locus_tag=CFSAN001082_00607
NZ_APAH01000007.1	Protein Homology	CDS	16373	17797	.	-	0	ID=cds-WP_001519200.1;Parent=gene-CFSAN001082_RS24730;Dbxref=GenBank:WP_001519200.1;Name=WP_001519200.1;Ontology_term=GO:0006400,GO:0016782,GO:0051539,GO:1904047;gbkey=CDS;gene=miaB;go_function=transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459662.1;locus_tag=CFSAN001082_RS24730;product=tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB;protein_id=WP_001519200.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	17941	19116	.	+	.	ID=gene-CFSAN001082_RS24735;Name=ubiF;gbkey=Gene;gene=ubiF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24735;old_locus_tag=CFSAN001082_00612
NZ_APAH01000007.1	Protein Homology	CDS	17941	19116	.	+	0	ID=cds-WP_023253726.1;Parent=gene-CFSAN001082_RS24735;Dbxref=GenBank:WP_023253726.1;Name=WP_023253726.1;Ontology_term=GO:0006744,GO:0016709;gbkey=CDS;gene=ubiF;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459663.1;locus_tag=CFSAN001082_RS24735;product=3-demethoxyubiquinol 3-hydroxylase;protein_id=WP_023253726.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	19183	19758	.	-	.	ID=gene-CFSAN001082_RS24740;Name=CFSAN001082_RS24740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24740;old_locus_tag=CFSAN001082_00617
NZ_APAH01000007.1	Protein Homology	CDS	19183	19758	.	-	0	ID=cds-WP_023253727.1;Parent=gene-CFSAN001082_RS24740;Dbxref=GenBank:WP_023253727.1;Name=WP_023253727.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459664.1;locus_tag=CFSAN001082_RS24740;product=hypothetical protein;protein_id=WP_023253727.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	19894	19968	.	-	.	ID=gene-CFSAN001082_RS24745;Name=CFSAN001082_RS24745;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24745;old_locus_tag=CFSAN001082_t00659
NZ_APAH01000007.1	tRNAscan-SE	tRNA	19894	19968	.	-	.	ID=rna-CFSAN001082_RS24745;Parent=gene-CFSAN001082_RS24745;anticodon=(pos:complement(19934..19936));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24745;product=tRNA-Gln
NZ_APAH01000007.1	tRNAscan-SE	exon	19894	19968	.	-	.	ID=exon-CFSAN001082_RS24745-1;Parent=rna-CFSAN001082_RS24745;anticodon=(pos:complement(19934..19936));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24745;product=tRNA-Gln
NZ_APAH01000007.1	RefSeq	gene	20012	20086	.	-	.	ID=gene-CFSAN001082_RS24750;Name=CFSAN001082_RS24750;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24750;old_locus_tag=CFSAN001082_t00661
NZ_APAH01000007.1	tRNAscan-SE	tRNA	20012	20086	.	-	.	ID=rna-CFSAN001082_RS24750;Parent=gene-CFSAN001082_RS24750;anticodon=(pos:complement(20052..20054));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24750;product=tRNA-Gln
NZ_APAH01000007.1	tRNAscan-SE	exon	20012	20086	.	-	.	ID=exon-CFSAN001082_RS24750-1;Parent=rna-CFSAN001082_RS24750;anticodon=(pos:complement(20052..20054));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24750;product=tRNA-Gln
NZ_APAH01000007.1	RefSeq	gene	20133	20209	.	-	.	ID=gene-CFSAN001082_RS24755;Name=CFSAN001082_RS24755;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24755;old_locus_tag=CFSAN001082_t00663
NZ_APAH01000007.1	tRNAscan-SE	tRNA	20133	20209	.	-	.	ID=rna-CFSAN001082_RS24755;Parent=gene-CFSAN001082_RS24755;anticodon=(pos:complement(20173..20175));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24755;product=tRNA-Met
NZ_APAH01000007.1	tRNAscan-SE	exon	20133	20209	.	-	.	ID=exon-CFSAN001082_RS24755-1;Parent=rna-CFSAN001082_RS24755;anticodon=(pos:complement(20173..20175));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24755;product=tRNA-Met
NZ_APAH01000007.1	RefSeq	gene	20225	20299	.	-	.	ID=gene-CFSAN001082_RS24760;Name=CFSAN001082_RS24760;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24760;old_locus_tag=CFSAN001082_t00665
NZ_APAH01000007.1	tRNAscan-SE	tRNA	20225	20299	.	-	.	ID=rna-CFSAN001082_RS24760;Parent=gene-CFSAN001082_RS24760;anticodon=(pos:complement(20265..20267));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24760;product=tRNA-Gln
NZ_APAH01000007.1	tRNAscan-SE	exon	20225	20299	.	-	.	ID=exon-CFSAN001082_RS24760-1;Parent=rna-CFSAN001082_RS24760;anticodon=(pos:complement(20265..20267));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24760;product=tRNA-Gln
NZ_APAH01000007.1	RefSeq	gene	20323	20407	.	-	.	ID=gene-CFSAN001082_RS24765;Name=CFSAN001082_RS24765;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24765;old_locus_tag=CFSAN001082_t00667
NZ_APAH01000007.1	tRNAscan-SE	tRNA	20323	20407	.	-	.	ID=rna-CFSAN001082_RS24765;Parent=gene-CFSAN001082_RS24765;anticodon=(pos:complement(20371..20373));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24765;product=tRNA-Leu
NZ_APAH01000007.1	tRNAscan-SE	exon	20323	20407	.	-	.	ID=exon-CFSAN001082_RS24765-1;Parent=rna-CFSAN001082_RS24765;anticodon=(pos:complement(20371..20373));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24765;product=tRNA-Leu
NZ_APAH01000007.1	RefSeq	gene	20417	20493	.	-	.	ID=gene-CFSAN001082_RS24770;Name=CFSAN001082_RS24770;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24770;old_locus_tag=CFSAN001082_t00669
NZ_APAH01000007.1	tRNAscan-SE	tRNA	20417	20493	.	-	.	ID=rna-CFSAN001082_RS24770;Parent=gene-CFSAN001082_RS24770;anticodon=(pos:complement(20457..20459));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24770;product=tRNA-Met
NZ_APAH01000007.1	tRNAscan-SE	exon	20417	20493	.	-	.	ID=exon-CFSAN001082_RS24770-1;Parent=rna-CFSAN001082_RS24770;anticodon=(pos:complement(20457..20459));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24770;product=tRNA-Met
NZ_APAH01000007.1	RefSeq	gene	20509	20583	.	-	.	ID=gene-CFSAN001082_RS24775;Name=CFSAN001082_RS24775;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24775;old_locus_tag=CFSAN001082_t00671
NZ_APAH01000007.1	tRNAscan-SE	tRNA	20509	20583	.	-	.	ID=rna-CFSAN001082_RS24775;Parent=gene-CFSAN001082_RS24775;anticodon=(pos:complement(20549..20551));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24775;product=tRNA-Gln
NZ_APAH01000007.1	tRNAscan-SE	exon	20509	20583	.	-	.	ID=exon-CFSAN001082_RS24775-1;Parent=rna-CFSAN001082_RS24775;anticodon=(pos:complement(20549..20551));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24775;product=tRNA-Gln
NZ_APAH01000007.1	RefSeq	gene	20619	20693	.	-	.	ID=gene-CFSAN001082_RS24780;Name=CFSAN001082_RS24780;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24780;old_locus_tag=CFSAN001082_t00673
NZ_APAH01000007.1	tRNAscan-SE	tRNA	20619	20693	.	-	.	ID=rna-CFSAN001082_RS24780;Parent=gene-CFSAN001082_RS24780;anticodon=(pos:complement(20659..20661));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24780;product=tRNA-Gln
NZ_APAH01000007.1	tRNAscan-SE	exon	20619	20693	.	-	.	ID=exon-CFSAN001082_RS24780-1;Parent=rna-CFSAN001082_RS24780;anticodon=(pos:complement(20659..20661));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24780;product=tRNA-Gln
NZ_APAH01000007.1	RefSeq	gene	20717	20801	.	-	.	ID=gene-CFSAN001082_RS24785;Name=CFSAN001082_RS24785;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24785;old_locus_tag=CFSAN001082_t00675
NZ_APAH01000007.1	tRNAscan-SE	tRNA	20717	20801	.	-	.	ID=rna-CFSAN001082_RS24785;Parent=gene-CFSAN001082_RS24785;anticodon=(pos:complement(20765..20767));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24785;product=tRNA-Leu
NZ_APAH01000007.1	tRNAscan-SE	exon	20717	20801	.	-	.	ID=exon-CFSAN001082_RS24785-1;Parent=rna-CFSAN001082_RS24785;anticodon=(pos:complement(20765..20767));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24785;product=tRNA-Leu
NZ_APAH01000007.1	RefSeq	gene	20811	20887	.	-	.	ID=gene-CFSAN001082_RS24790;Name=CFSAN001082_RS24790;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24790;old_locus_tag=CFSAN001082_t00677
NZ_APAH01000007.1	tRNAscan-SE	tRNA	20811	20887	.	-	.	ID=rna-CFSAN001082_RS24790;Parent=gene-CFSAN001082_RS24790;anticodon=(pos:complement(20851..20853));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24790;product=tRNA-Met
NZ_APAH01000007.1	tRNAscan-SE	exon	20811	20887	.	-	.	ID=exon-CFSAN001082_RS24790-1;Parent=rna-CFSAN001082_RS24790;anticodon=(pos:complement(20851..20853));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24790;product=tRNA-Met
NZ_APAH01000007.1	RefSeq	gene	21110	22774	.	-	.	ID=gene-CFSAN001082_RS24795;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24795;old_locus_tag=CFSAN001082_00622
NZ_APAH01000007.1	Protein Homology	CDS	21110	22774	.	-	0	ID=cds-WP_023182242.1;Parent=gene-CFSAN001082_RS24795;Dbxref=GenBank:WP_023182242.1;Name=WP_023182242.1;Ontology_term=GO:0006529,GO:0004066;gbkey=CDS;gene=asnB;go_function=asparagine synthase (glutamine-hydrolyzing) activity|0004066||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001724523.1;locus_tag=CFSAN001082_RS24795;product=asparagine synthase B;protein_id=WP_023182242.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	23064	23816	.	-	.	ID=gene-CFSAN001082_RS24800;Name=nagD;gbkey=Gene;gene=nagD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24800;old_locus_tag=CFSAN001082_00627
NZ_APAH01000007.1	Protein Homology	CDS	23064	23816	.	-	0	ID=cds-WP_000153143.1;Parent=gene-CFSAN001082_RS24800;Dbxref=GenBank:WP_000153143.1;Name=WP_000153143.1;gbkey=CDS;gene=nagD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007373873.1;locus_tag=CFSAN001082_RS24800;product=ribonucleotide monophosphatase NagD;protein_id=WP_000153143.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	23863	25083	.	-	.	ID=gene-CFSAN001082_RS24805;Name=nagC;gbkey=Gene;gene=nagC;gene_biotype=protein_coding;gene_synonym=nagR;locus_tag=CFSAN001082_RS24805;old_locus_tag=CFSAN001082_00632
NZ_APAH01000007.1	Protein Homology	CDS	23863	25083	.	-	0	ID=cds-WP_000187578.1;Parent=gene-CFSAN001082_RS24805;Dbxref=GenBank:WP_000187578.1;Name=WP_000187578.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=nagC;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459667.1;locus_tag=CFSAN001082_RS24805;product=DNA-binding transcriptional regulator NagC;protein_id=WP_000187578.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	25088	26242	.	-	.	ID=gene-CFSAN001082_RS24810;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24810;old_locus_tag=CFSAN001082_00637
NZ_APAH01000007.1	Protein Homology	CDS	25088	26242	.	-	0	ID=cds-WP_000271186.1;Parent=gene-CFSAN001082_RS24810;Dbxref=GenBank:WP_000271186.1;Name=WP_000271186.1;Ontology_term=GO:0006044,GO:0008448;gbkey=CDS;gene=nagA;go_function=N-acetylglucosamine-6-phosphate deacetylase activity|0008448||IEA;go_process=N-acetylglucosamine metabolic process|0006044||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459668.1;locus_tag=CFSAN001082_RS24810;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=WP_000271186.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	26302	27102	.	-	.	ID=gene-CFSAN001082_RS24815;Name=nagB;gbkey=Gene;gene=nagB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24815;old_locus_tag=CFSAN001082_00642
NZ_APAH01000007.1	Protein Homology	CDS	26302	27102	.	-	0	ID=cds-WP_001237059.1;Parent=gene-CFSAN001082_RS24815;Dbxref=GenBank:WP_001237059.1;Name=WP_001237059.1;Ontology_term=GO:0006044,GO:0004342;gbkey=CDS;gene=nagB;go_function=glucosamine-6-phosphate deaminase activity|0004342||IEA;go_process=N-acetylglucosamine metabolic process|0006044||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008805656.1;locus_tag=CFSAN001082_RS24815;product=glucosamine-6-phosphate deaminase;protein_id=WP_001237059.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	27429	29381	.	+	.	ID=gene-CFSAN001082_RS24820;Name=nagE;gbkey=Gene;gene=nagE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24820;old_locus_tag=CFSAN001082_00647
NZ_APAH01000007.1	Protein Homology	CDS	27429	29381	.	+	0	ID=cds-WP_001023069.1;Parent=gene-CFSAN001082_RS24820;Dbxref=GenBank:WP_001023069.1;Name=WP_001023069.1;Ontology_term=GO:0009401,GO:0008982,GO:0015572,GO:0016020;gbkey=CDS;gene=nagE;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,N-acetylglucosamine transmembrane transporter activity|0015572||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459670.1;locus_tag=CFSAN001082_RS24820;product=PTS N-acetyl glucosamine transporter subunit IIABC;protein_id=WP_001023069.1;transl_table=11
NZ_APAH01000007.1	RefSeq	gene	29592	31259	.	+	.	ID=gene-CFSAN001082_RS24825;Name=glnS;gbkey=Gene;gene=glnS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24825;old_locus_tag=CFSAN001082_00652
NZ_APAH01000007.1	Protein Homology	CDS	29592	31259	.	+	0	ID=cds-WP_001287179.1;Parent=gene-CFSAN001082_RS24825;Dbxref=GenBank:WP_001287179.1;Name=WP_001287179.1;Ontology_term=GO:0006425,GO:0000166,GO:0004819,GO:0005524,GO:0005737;gbkey=CDS;gene=glnS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glutamine-tRNA ligase activity|0004819||IEA,ATP binding|0005524||IEA;go_process=glutaminyl-tRNA aminoacylation|0006425||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459671.1;locus_tag=CFSAN001082_RS24825;product=glutamine--tRNA ligase;protein_id=WP_001287179.1;transl_table=11
##sequence-region NZ_APAH01000008.1 1 1539
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000008.1	RefSeq	region	1	1539	.	+	.	ID=NZ_APAH01000008.1:1..1539;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000008.1	RefSeq	gene	1	1333	.	-	.	ID=gene-CFSAN001082_RS24830;Name=CFSAN001082_RS24830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24830;old_locus_tag=CFSAN001082_00677;partial=true;start_range=.,1
NZ_APAH01000008.1	Protein Homology	CDS	1	1333	.	-	0	ID=cds-WP_023253728.1;Parent=gene-CFSAN001082_RS24830;Dbxref=GenBank:WP_023253728.1;Name=WP_023253728.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000631807.1;locus_tag=CFSAN001082_RS24830;partial=true;product=AMP-binding protein;protein_id=WP_023253728.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000009.1 1 59492
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000009.1	RefSeq	region	1	59492	.	+	.	ID=NZ_APAH01000009.1:1..59492;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000009.1	RefSeq	gene	13	744	.	-	.	ID=gene-CFSAN001082_RS24835;Name=rlmB;gbkey=Gene;gene=rlmB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24835;old_locus_tag=CFSAN001082_00682
NZ_APAH01000009.1	Protein Homology	CDS	13	744	.	-	0	ID=cds-WP_001293274.1;Parent=gene-CFSAN001082_RS24835;Dbxref=GenBank:WP_001293274.1;Name=WP_001293274.1;Ontology_term=GO:0006396,GO:0003723,GO:0008173;gbkey=CDS;gene=rlmB;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463230.1;locus_tag=CFSAN001082_RS24835;product=23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;protein_id=WP_001293274.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	835	3273	.	-	.	ID=gene-CFSAN001082_RS24840;Name=rnr;gbkey=Gene;gene=rnr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24840;old_locus_tag=CFSAN001082_00687
NZ_APAH01000009.1	Protein Homology	CDS	835	3273	.	-	0	ID=cds-WP_000076354.1;Parent=gene-CFSAN001082_RS24840;Dbxref=GenBank:WP_000076354.1;Name=WP_000076354.1;Ontology_term=GO:0016070,GO:0004540;gbkey=CDS;gene=rnr;go_function=RNA nuclease activity|0004540||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463229.1;locus_tag=CFSAN001082_RS24840;product=ribonuclease R;protein_id=WP_000076354.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	3311	3736	.	-	.	ID=gene-CFSAN001082_RS24845;Name=nsrR;gbkey=Gene;gene=nsrR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24845;old_locus_tag=CFSAN001082_00692
NZ_APAH01000009.1	Protein Homology	CDS	3311	3736	.	-	0	ID=cds-WP_001177632.1;Parent=gene-CFSAN001082_RS24845;Dbxref=GenBank:WP_001177632.1;Name=WP_001177632.1;gbkey=CDS;gene=nsrR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134424.1;locus_tag=CFSAN001082_RS24845;product=nitric oxide-sensing transcriptional repressor NsrR;protein_id=WP_001177632.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	3956	5254	.	-	.	ID=gene-CFSAN001082_RS24850;Name=purA;gbkey=Gene;gene=purA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24850;old_locus_tag=CFSAN001082_00697
NZ_APAH01000009.1	Protein Homology	CDS	3956	5254	.	-	0	ID=cds-WP_000527960.1;Parent=gene-CFSAN001082_RS24850;Dbxref=GenBank:WP_000527960.1;Name=WP_000527960.1;Ontology_term=GO:0009152,GO:0004019;gbkey=CDS;gene=purA;go_function=adenylosuccinate synthase activity|0004019||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019842885.1;locus_tag=CFSAN001082_RS24850;product=adenylosuccinate synthase;protein_id=WP_000527960.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	5357	5554	.	-	.	ID=gene-CFSAN001082_RS24855;Name=CFSAN001082_RS24855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24855;old_locus_tag=CFSAN001082_00702
NZ_APAH01000009.1	Protein Homology	CDS	5357	5554	.	-	0	ID=cds-WP_023253729.1;Parent=gene-CFSAN001082_RS24855;Dbxref=GenBank:WP_023253729.1;Name=WP_023253729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463226.1;locus_tag=CFSAN001082_RS24855;product=DUF2065 domain-containing protein;protein_id=WP_023253729.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	5633	6637	.	-	.	ID=gene-CFSAN001082_RS24860;Name=hflC;gbkey=Gene;gene=hflC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24860;old_locus_tag=CFSAN001082_00707
NZ_APAH01000009.1	Protein Homology	CDS	5633	6637	.	-	0	ID=cds-WP_001232417.1;Parent=gene-CFSAN001082_RS24860;Dbxref=GenBank:WP_001232417.1;Name=WP_001232417.1;gbkey=CDS;gene=hflC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463225.1;locus_tag=CFSAN001082_RS24860;product=protease modulator HflC;protein_id=WP_001232417.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	6640	7899	.	-	.	ID=gene-CFSAN001082_RS24865;Name=hflK;gbkey=Gene;gene=hflK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24865;old_locus_tag=CFSAN001082_00712
NZ_APAH01000009.1	Protein Homology	CDS	6640	7899	.	-	0	ID=cds-WP_000312505.1;Parent=gene-CFSAN001082_RS24865;Dbxref=GenBank:WP_000312505.1;Name=WP_000312505.1;Ontology_term=GO:0016020;gbkey=CDS;gene=hflK;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463224.1;locus_tag=CFSAN001082_RS24865;product=FtsH protease activity modulator HflK;protein_id=WP_000312505.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	8114	9394	.	-	.	ID=gene-CFSAN001082_RS24870;Name=hflX;gbkey=Gene;gene=hflX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24870;old_locus_tag=CFSAN001082_00717
NZ_APAH01000009.1	Protein Homology	CDS	8114	9394	.	-	0	ID=cds-WP_000460338.1;Parent=gene-CFSAN001082_RS24870;Dbxref=GenBank:WP_000460338.1;Name=WP_000460338.1;Ontology_term=GO:0005525;gbkey=CDS;gene=hflX;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463223.1;locus_tag=CFSAN001082_RS24870;product=ribosome rescue GTPase HflX;protein_id=WP_000460338.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	9466	9774	.	-	.	ID=gene-CFSAN001082_RS24875;Name=hfq;gbkey=Gene;gene=hfq;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24875;old_locus_tag=CFSAN001082_00722
NZ_APAH01000009.1	Protein Homology	CDS	9466	9774	.	-	0	ID=cds-WP_001051875.1;Parent=gene-CFSAN001082_RS24875;Dbxref=GenBank:WP_001051875.1;Name=WP_001051875.1;Ontology_term=GO:0006355,GO:0003723;gbkey=CDS;gene=hfq;go_function=RNA binding|0003723||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463222.1;locus_tag=CFSAN001082_RS24875;product=RNA chaperone Hfq;protein_id=WP_001051875.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	9857	10807	.	-	.	ID=gene-CFSAN001082_RS24880;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24880;old_locus_tag=CFSAN001082_00727
NZ_APAH01000009.1	Protein Homology	CDS	9857	10807	.	-	0	ID=cds-WP_001000734.1;Parent=gene-CFSAN001082_RS24880;Dbxref=GenBank:WP_001000734.1;Name=WP_001000734.1;Ontology_term=GO:0006400,GO:0052381,GO:0005737;gbkey=CDS;gene=miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA dimethylallyltransferase activity|0052381||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463221.1;locus_tag=CFSAN001082_RS24880;product=tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA;protein_id=WP_001000734.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	10800	12656	.	-	.	ID=gene-CFSAN001082_RS24885;Name=mutL;gbkey=Gene;gene=mutL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24885;old_locus_tag=CFSAN001082_00732
NZ_APAH01000009.1	Protein Homology	CDS	10800	12656	.	-	0	ID=cds-WP_023253730.1;Parent=gene-CFSAN001082_RS24885;Dbxref=GenBank:WP_023253730.1;Name=WP_023253730.1;Ontology_term=GO:0006298,GO:0005524,GO:0016887,GO:0030983,GO:0032300;gbkey=CDS;gene=mutL;go_component=mismatch repair complex|0032300||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463220.1;locus_tag=CFSAN001082_RS24885;product=DNA mismatch repair endonuclease MutL;protein_id=WP_023253730.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	12666	13985	.	-	.	ID=gene-CFSAN001082_RS24890;Name=amiB;gbkey=Gene;gene=amiB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24890;old_locus_tag=CFSAN001082_00737
NZ_APAH01000009.1	Protein Homology	CDS	12666	13985	.	-	0	ID=cds-WP_000640362.1;Parent=gene-CFSAN001082_RS24890;Dbxref=GenBank:WP_000640362.1;Name=WP_000640362.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;gene=amiB;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463219.1;locus_tag=CFSAN001082_RS24890;product=N-acetylmuramoyl-L-alanine amidase AmiB;protein_id=WP_000640362.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	14002	14463	.	-	.	ID=gene-CFSAN001082_RS24895;Name=tsaE;gbkey=Gene;gene=tsaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24895;old_locus_tag=CFSAN001082_00742
NZ_APAH01000009.1	Protein Homology	CDS	14002	14463	.	-	0	ID=cds-WP_000981984.1;Parent=gene-CFSAN001082_RS24895;Dbxref=GenBank:WP_000981984.1;Name=WP_000981984.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaE;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463218.1;locus_tag=CFSAN001082_RS24895;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;protein_id=WP_000981984.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	14435	15982	.	-	.	ID=gene-CFSAN001082_RS24900;Name=nnr;gbkey=Gene;gene=nnr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24900;old_locus_tag=CFSAN001082_00747
NZ_APAH01000009.1	Protein Homology	CDS	14435	15982	.	-	0	ID=cds-WP_023253731.1;Parent=gene-CFSAN001082_RS24900;Dbxref=GenBank:WP_023253731.1;Name=WP_023253731.1;Ontology_term=GO:0052855;gbkey=CDS;gene=nnr;go_function=ADP-dependent NAD(P)H-hydrate dehydratase activity|0052855||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463217.1;locus_tag=CFSAN001082_RS24900;product=bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase;protein_id=WP_023253731.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	15981	17120	.	+	.	ID=gene-CFSAN001082_RS24905;Name=queG;gbkey=Gene;gene=queG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24905;old_locus_tag=CFSAN001082_00752
NZ_APAH01000009.1	Protein Homology	CDS	15981	17120	.	+	0	ID=cds-WP_001615111.1;Parent=gene-CFSAN001082_RS24905;Dbxref=GenBank:WP_001615111.1;Name=WP_001615111.1;Ontology_term=GO:0008033,GO:0008616,GO:0051539,GO:0052693;gbkey=CDS;gene=queG;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,epoxyqueuosine reductase activity|0052693||IEA;go_process=tRNA processing|0008033||IEA,queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418587.1;locus_tag=CFSAN001082_RS24905;product=tRNA epoxyqueuosine(34) reductase QueG;protein_id=WP_001615111.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	17390	17465	.	-	.	ID=gene-CFSAN001082_RS24910;Name=CFSAN001082_RS24910;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24910;old_locus_tag=CFSAN001082_t00974
NZ_APAH01000009.1	tRNAscan-SE	tRNA	17390	17465	.	-	.	ID=rna-CFSAN001082_RS24910;Parent=gene-CFSAN001082_RS24910;anticodon=(pos:complement(17430..17432));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24910;product=tRNA-Gly
NZ_APAH01000009.1	tRNAscan-SE	exon	17390	17465	.	-	.	ID=exon-CFSAN001082_RS24910-1;Parent=rna-CFSAN001082_RS24910;anticodon=(pos:complement(17430..17432));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24910;product=tRNA-Gly
NZ_APAH01000009.1	RefSeq	gene	17622	17697	.	-	.	ID=gene-CFSAN001082_RS24915;Name=CFSAN001082_RS24915;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24915;old_locus_tag=CFSAN001082_t00976
NZ_APAH01000009.1	tRNAscan-SE	tRNA	17622	17697	.	-	.	ID=rna-CFSAN001082_RS24915;Parent=gene-CFSAN001082_RS24915;anticodon=(pos:complement(17662..17664));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24915;product=tRNA-Gly
NZ_APAH01000009.1	tRNAscan-SE	exon	17622	17697	.	-	.	ID=exon-CFSAN001082_RS24915-1;Parent=rna-CFSAN001082_RS24915;anticodon=(pos:complement(17662..17664));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24915;product=tRNA-Gly
NZ_APAH01000009.1	RefSeq	gene	17735	17810	.	-	.	ID=gene-CFSAN001082_RS24920;Name=CFSAN001082_RS24920;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS24920;old_locus_tag=CFSAN001082_t00978
NZ_APAH01000009.1	tRNAscan-SE	tRNA	17735	17810	.	-	.	ID=rna-CFSAN001082_RS24920;Parent=gene-CFSAN001082_RS24920;anticodon=(pos:complement(17775..17777));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24920;product=tRNA-Gly
NZ_APAH01000009.1	tRNAscan-SE	exon	17735	17810	.	-	.	ID=exon-CFSAN001082_RS24920-1;Parent=rna-CFSAN001082_RS24920;anticodon=(pos:complement(17775..17777));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS24920;product=tRNA-Gly
NZ_APAH01000009.1	RefSeq	gene	18086	18826	.	+	.	ID=gene-CFSAN001082_RS24925;Name=CFSAN001082_RS24925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24925;old_locus_tag=CFSAN001082_00757
NZ_APAH01000009.1	Protein Homology	CDS	18086	18826	.	+	0	ID=cds-WP_000727897.1;Parent=gene-CFSAN001082_RS24925;Dbxref=GenBank:WP_000727897.1;Name=WP_000727897.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463215.3;locus_tag=CFSAN001082_RS24925;product=arginine ABC transporter substrate-binding protein;protein_id=WP_000727897.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	18888	19433	.	-	.	ID=gene-CFSAN001082_RS24930;Name=orn;gbkey=Gene;gene=orn;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24930;old_locus_tag=CFSAN001082_00762
NZ_APAH01000009.1	Protein Homology	CDS	18888	19433	.	-	0	ID=cds-WP_023207253.1;Parent=gene-CFSAN001082_RS24930;Dbxref=GenBank:WP_023207253.1;Name=WP_023207253.1;Ontology_term=GO:0000175,GO:0003676;gbkey=CDS;gene=orn;go_function=3'-5'-RNA exonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882950.1;locus_tag=CFSAN001082_RS24930;product=oligoribonuclease;protein_id=WP_023207253.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	19540	20592	.	+	.	ID=gene-CFSAN001082_RS24935;Name=rsgA;gbkey=Gene;gene=rsgA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24935;old_locus_tag=CFSAN001082_00767
NZ_APAH01000009.1	Protein Homology	CDS	19540	20592	.	+	0	ID=cds-WP_000041945.1;Parent=gene-CFSAN001082_RS24935;Dbxref=GenBank:WP_000041945.1;Name=WP_000041945.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=rsgA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313167.2;locus_tag=CFSAN001082_RS24935;product=small ribosomal subunit biogenesis GTPase RsgA;protein_id=WP_000041945.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	20684	21652	.	+	.	ID=gene-CFSAN001082_RS24940;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24940;old_locus_tag=CFSAN001082_00772
NZ_APAH01000009.1	Protein Homology	CDS	20684	21652	.	+	0	ID=cds-WP_000934949.1;Parent=gene-CFSAN001082_RS24940;Dbxref=GenBank:WP_000934949.1;Name=WP_000934949.1;Note=Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein.;Ontology_term=GO:0008654,GO:0004609;gbkey=CDS;gene=asd;go_function=phosphatidylserine decarboxylase activity|0004609||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463212.1;locus_tag=CFSAN001082_RS24940;product=archaetidylserine decarboxylase;protein_id=WP_000934949.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	21671	24997	.	+	.	ID=gene-CFSAN001082_RS24945;Name=mscM;gbkey=Gene;gene=mscM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24945;old_locus_tag=CFSAN001082_00777
NZ_APAH01000009.1	Protein Homology	CDS	21671	24997	.	+	0	ID=cds-WP_001236755.1;Parent=gene-CFSAN001082_RS24945;Dbxref=GenBank:WP_001236755.1;Name=WP_001236755.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=mscM;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463211.1;locus_tag=CFSAN001082_RS24945;product=miniconductance mechanosensitive channel MscM;protein_id=WP_001236755.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	25064	25378	.	-	.	ID=gene-CFSAN001082_RS24950;Name=CFSAN001082_RS24950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24950;old_locus_tag=CFSAN001082_00782
NZ_APAH01000009.1	Protein Homology	CDS	25064	25378	.	-	0	ID=cds-WP_000074655.1;Parent=gene-CFSAN001082_RS24950;Dbxref=GenBank:WP_000074655.1;Name=WP_000074655.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463210.1;locus_tag=CFSAN001082_RS24950;product=YjeO family protein;protein_id=WP_000074655.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	25430	26932	.	-	.	ID=gene-CFSAN001082_RS24955;Name=yjeM;gbkey=Gene;gene=yjeM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24955;old_locus_tag=CFSAN001082_00787
NZ_APAH01000009.1	Protein Homology	CDS	25430	26932	.	-	0	ID=cds-WP_000149872.1;Parent=gene-CFSAN001082_RS24955;Dbxref=GenBank:WP_000149872.1;Name=WP_000149872.1;Ontology_term=GO:0022857;gbkey=CDS;gene=yjeM;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463209.1;locus_tag=CFSAN001082_RS24955;product=glutamate/gamma-aminobutyrate family transporter YjeM;protein_id=WP_000149872.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	27158	28135	.	-	.	ID=gene-CFSAN001082_RS24960;Name=epmA;gbkey=Gene;gene=epmA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24960;old_locus_tag=CFSAN001082_00792
NZ_APAH01000009.1	Protein Homology	CDS	27158	28135	.	-	0	ID=cds-WP_000004797.1;Parent=gene-CFSAN001082_RS24960;Dbxref=GenBank:WP_000004797.1;Name=WP_000004797.1;Ontology_term=GO:0006418,GO:0004812;gbkey=CDS;gene=epmA;go_function=aminoacyl-tRNA ligase activity|0004812||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000004771.1;locus_tag=CFSAN001082_RS24960;product=elongation factor P--(R)-beta-lysine ligase;protein_id=WP_000004797.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	28458	30248	.	+	.	ID=gene-CFSAN001082_RS24965;Name=frdA;gbkey=Gene;gene=frdA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24965;old_locus_tag=CFSAN001082_00797
NZ_APAH01000009.1	Protein Homology	CDS	28458	30248	.	+	0	ID=cds-WP_001192952.1;Parent=gene-CFSAN001082_RS24965;Dbxref=GenBank:WP_001192952.1;Name=WP_001192952.1;Ontology_term=GO:0009061,GO:0022900,GO:0016491,GO:0050660;gbkey=CDS;gene=frdA;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=anaerobic respiration|0009061||IEA,electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463207.1;locus_tag=CFSAN001082_RS24965;product=fumarate reductase (quinol) flavoprotein subunit;protein_id=WP_001192952.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	30241	30975	.	+	.	ID=gene-CFSAN001082_RS24970;Name=frdB;gbkey=Gene;gene=frdB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24970;old_locus_tag=CFSAN001082_00802
NZ_APAH01000009.1	Protein Homology	CDS	30241	30975	.	+	0	ID=cds-WP_000829509.1;Parent=gene-CFSAN001082_RS24970;Dbxref=GenBank:WP_000829509.1;Name=WP_000829509.1;gbkey=CDS;gene=frdB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882957.1;locus_tag=CFSAN001082_RS24970;product=fumarate reductase iron-sulfur protein;protein_id=WP_000829509.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	30986	31381	.	+	.	ID=gene-CFSAN001082_RS24975;Name=frdC;gbkey=Gene;gene=frdC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24975;old_locus_tag=CFSAN001082_00807
NZ_APAH01000009.1	Protein Homology	CDS	30986	31381	.	+	0	ID=cds-WP_000208749.1;Parent=gene-CFSAN001082_RS24975;Dbxref=GenBank:WP_000208749.1;Name=WP_000208749.1;Ontology_term=GO:0016020;gbkey=CDS;gene=frdC;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463205.1;locus_tag=CFSAN001082_RS24975;product=fumarate reductase subunit FrdC;protein_id=WP_000208749.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	31392	31751	.	+	.	ID=gene-CFSAN001082_RS24980;Name=frdD;gbkey=Gene;gene=frdD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24980;old_locus_tag=CFSAN001082_00812
NZ_APAH01000009.1	Protein Homology	CDS	31392	31751	.	+	0	ID=cds-WP_000609650.1;Parent=gene-CFSAN001082_RS24980;Dbxref=GenBank:WP_000609650.1;Name=WP_000609650.1;gbkey=CDS;gene=frdD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463204.1;locus_tag=CFSAN001082_RS24980;product=fumarate reductase subunit FrdD;protein_id=WP_000609650.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	31862	32395	.	+	.	ID=gene-CFSAN001082_RS24985;Name=CFSAN001082_RS24985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24985;old_locus_tag=CFSAN001082_00817
NZ_APAH01000009.1	Protein Homology	CDS	31862	32395	.	+	0	ID=cds-WP_001221669.1;Parent=gene-CFSAN001082_RS24985;Dbxref=GenBank:WP_001221669.1;Name=WP_001221669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463203.1;locus_tag=CFSAN001082_RS24985;product=lipocalin family protein;protein_id=WP_001221669.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	32412	32729	.	-	.	ID=gene-CFSAN001082_RS24990;Name=sugE;gbkey=Gene;gene=sugE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24990;old_locus_tag=CFSAN001082_00822
NZ_APAH01000009.1	Protein Homology	CDS	32412	32729	.	-	0	ID=cds-WP_000118469.1;Parent=gene-CFSAN001082_RS24990;Dbxref=GenBank:WP_000118469.1;Name=WP_000118469.1;Ontology_term=GO:0022857,GO:0016020;gbkey=CDS;gene=sugE;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463202.1;locus_tag=CFSAN001082_RS24990;product=quaternary ammonium compound efflux SMR transporter SugE;protein_id=WP_000118469.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	32986	33573	.	+	.	ID=gene-CFSAN001082_RS24995;Name=CFSAN001082_RS24995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS24995;old_locus_tag=CFSAN001082_00827
NZ_APAH01000009.1	Protein Homology	CDS	32986	33573	.	+	0	ID=cds-WP_000912959.1;Parent=gene-CFSAN001082_RS24995;Dbxref=GenBank:WP_000912959.1;Name=WP_000912959.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463201.1;locus_tag=CFSAN001082_RS24995;product=helix-turn-helix transcriptional regulator;protein_id=WP_000912959.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	33604	33750	.	-	.	ID=gene-CFSAN001082_RS25000;Name=ecnB;gbkey=Gene;gene=ecnB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25000;old_locus_tag=CFSAN001082_00832
NZ_APAH01000009.1	Protein Homology	CDS	33604	33750	.	-	0	ID=cds-WP_000239598.1;Parent=gene-CFSAN001082_RS25000;Dbxref=GenBank:WP_000239598.1;Name=WP_000239598.1;gbkey=CDS;gene=ecnB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463200.1;locus_tag=CFSAN001082_RS25000;product=lipoprotein toxin entericidin B;protein_id=WP_000239598.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	33858	33992	.	-	.	ID=gene-CFSAN001082_RS25005;Name=CFSAN001082_RS25005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25005;old_locus_tag=CFSAN001082_00837
NZ_APAH01000009.1	Protein Homology	CDS	33858	33992	.	-	0	ID=cds-WP_000977687.1;Parent=gene-CFSAN001082_RS25005;Dbxref=GenBank:WP_000977687.1;Name=WP_000977687.1;Ontology_term=GO:0009636,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=response to toxic substance|0009636||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026283.1;locus_tag=CFSAN001082_RS25005;product=entericidin A/B family lipoprotein;protein_id=WP_000977687.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	34054	34620	.	-	.	ID=gene-CFSAN001082_RS25010;Name=efp;gbkey=Gene;gene=efp;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25010;old_locus_tag=CFSAN001082_00842
NZ_APAH01000009.1	Protein Homology	CDS	34054	34620	.	-	0	ID=cds-WP_000257282.1;Parent=gene-CFSAN001082_RS25010;Dbxref=GenBank:WP_000257282.1;Name=WP_000257282.1;Ontology_term=GO:0006414,GO:0003746,GO:0005737;gbkey=CDS;gene=efp;go_component=cytoplasm|0005737||IEA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004871142.1;locus_tag=CFSAN001082_RS25010;product=elongation factor P;protein_id=WP_000257282.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	34661	35689	.	+	.	ID=gene-CFSAN001082_RS25015;Name=epmB;gbkey=Gene;gene=epmB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25015;old_locus_tag=CFSAN001082_00847
NZ_APAH01000009.1	Protein Homology	CDS	34661	35689	.	+	0	ID=cds-WP_000940484.1;Parent=gene-CFSAN001082_RS25015;Dbxref=GenBank:WP_000940484.1;Name=WP_000940484.1;gbkey=CDS;gene=epmB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463197.1;locus_tag=CFSAN001082_RS25015;product=EF-P beta-lysylation protein EpmB;protein_id=WP_000940484.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	35971	36828	.	+	.	ID=gene-CFSAN001082_RS25020;Name=CFSAN001082_RS25020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25020;old_locus_tag=CFSAN001082_00852
NZ_APAH01000009.1	Protein Homology	CDS	35971	36828	.	+	0	ID=cds-WP_001229227.1;Parent=gene-CFSAN001082_RS25020;Dbxref=GenBank:WP_001229227.1;Name=WP_001229227.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463196.1;locus_tag=CFSAN001082_RS25020;product=YjeJ family protein;protein_id=WP_001229227.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	36876	37229	.	-	.	ID=gene-CFSAN001082_RS25025;Name=CFSAN001082_RS25025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25025;old_locus_tag=CFSAN001082_00857
NZ_APAH01000009.1	Protein Homology	CDS	36876	37229	.	-	0	ID=cds-WP_000558210.1;Parent=gene-CFSAN001082_RS25025;Dbxref=GenBank:WP_000558210.1;Name=WP_000558210.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418568.2;locus_tag=CFSAN001082_RS25025;product=DUF4156 domain-containing protein;protein_id=WP_000558210.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	37473	39119	.	-	.	ID=gene-CFSAN001082_RS25030;Name=groL;gbkey=Gene;gene=groL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25030;old_locus_tag=CFSAN001082_00862
NZ_APAH01000009.1	Protein Homology	CDS	37473	39119	.	-	0	ID=cds-WP_000729126.1;Parent=gene-CFSAN001082_RS25030;Dbxref=GenBank:WP_000729126.1;Name=WP_000729126.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds;Ontology_term=GO:0042026,GO:0140662;gbkey=CDS;gene=groL;go_function=ATP-dependent protein folding chaperone|0140662||IEA;go_process=protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120975.1;locus_tag=CFSAN001082_RS25030;product=chaperonin GroEL;protein_id=WP_000729126.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	39163	39456	.	-	.	ID=gene-CFSAN001082_RS25035;Name=CFSAN001082_RS25035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25035;old_locus_tag=CFSAN001082_00867
NZ_APAH01000009.1	Protein Homology	CDS	39163	39456	.	-	0	ID=cds-WP_000027827.1;Parent=gene-CFSAN001082_RS25035;Dbxref=GenBank:WP_000027827.1;Name=WP_000027827.1;Ontology_term=GO:0005524,GO:0140662;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP-dependent protein folding chaperone|0140662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000027827.1;locus_tag=CFSAN001082_RS25035;product=co-chaperone GroES;protein_id=WP_000027827.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	39732	40973	.	+	.	ID=gene-CFSAN001082_RS25040;Name=yjeH;gbkey=Gene;gene=yjeH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25040;old_locus_tag=CFSAN001082_00872
NZ_APAH01000009.1	Protein Homology	CDS	39732	40973	.	+	0	ID=cds-WP_023136358.1;Parent=gene-CFSAN001082_RS25040;Dbxref=GenBank:WP_023136358.1;Name=WP_023136358.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yjeH;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463192.1;locus_tag=CFSAN001082_RS25040;product=L-methionine/branched-chain amino acid transporter;protein_id=WP_023136358.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	41032	41508	.	-	.	ID=gene-CFSAN001082_RS25045;Name=CFSAN001082_RS25045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25045;old_locus_tag=CFSAN001082_00877
NZ_APAH01000009.1	Protein Homology	CDS	41032	41508	.	-	0	ID=cds-WP_001267291.1;Parent=gene-CFSAN001082_RS25045;Dbxref=GenBank:WP_001267291.1;Name=WP_001267291.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313148.1;locus_tag=CFSAN001082_RS25045;product=FxsA family protein;protein_id=WP_001267291.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	41849	43285	.	+	.	ID=gene-CFSAN001082_RS25050;Name=aspA;gbkey=Gene;gene=aspA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25050;old_locus_tag=CFSAN001082_00882
NZ_APAH01000009.1	Protein Homology	CDS	41849	43285	.	+	0	ID=cds-WP_000069440.1;Parent=gene-CFSAN001082_RS25050;Dbxref=GenBank:WP_000069440.1;Name=WP_000069440.1;Ontology_term=GO:0006520,GO:0008797;gbkey=CDS;gene=aspA;go_function=aspartate ammonia-lyase activity|0008797||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463190.1;locus_tag=CFSAN001082_RS25050;product=aspartate ammonia-lyase;protein_id=WP_000069440.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	43400	44698	.	+	.	ID=gene-CFSAN001082_RS25055;Name=dcuA;gbkey=Gene;gene=dcuA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25055;old_locus_tag=CFSAN001082_00887
NZ_APAH01000009.1	Protein Homology	CDS	43400	44698	.	+	0	ID=cds-WP_023253732.1;Parent=gene-CFSAN001082_RS25055;Dbxref=GenBank:WP_023253732.1;Name=WP_023253732.1;gbkey=CDS;gene=dcuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463189.1;locus_tag=CFSAN001082_RS25055;product=anaerobic C4-dicarboxylate transporter DcuA;protein_id=WP_023253732.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	44819	45166	.	+	.	ID=gene-CFSAN001082_RS25060;Name=cutA;gbkey=Gene;gene=cutA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25060;old_locus_tag=CFSAN001082_00892
NZ_APAH01000009.1	Protein Homology	CDS	44819	45166	.	+	0	ID=cds-WP_000887832.1;Parent=gene-CFSAN001082_RS25060;Dbxref=GenBank:WP_000887832.1;Name=WP_000887832.1;gbkey=CDS;gene=cutA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463188.1;locus_tag=CFSAN001082_RS25060;product=divalent cation tolerance protein CutA;protein_id=WP_000887832.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	45142	46845	.	+	.	ID=gene-CFSAN001082_RS25065;Name=CFSAN001082_RS25065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25065;old_locus_tag=CFSAN001082_00897
NZ_APAH01000009.1	Protein Homology	CDS	45142	46845	.	+	0	ID=cds-WP_000068882.1;Parent=gene-CFSAN001082_RS25065;Dbxref=GenBank:WP_000068882.1;Name=WP_000068882.1;Ontology_term=GO:0017004,GO:0009055,GO:0030554,GO:0047134;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,adenyl nucleotide binding|0030554||IEA,protein-disulfide reductase [NAD(P)H] activity|0047134||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463187.1;locus_tag=CFSAN001082_RS25065;product=protein-disulfide reductase DsbD;protein_id=WP_000068882.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	46882	47457	.	+	.	ID=gene-CFSAN001082_RS25070;Name=CFSAN001082_RS25070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25070;old_locus_tag=CFSAN001082_00902
NZ_APAH01000009.1	Protein Homology	CDS	46882	47457	.	+	0	ID=cds-WP_001188509.1;Parent=gene-CFSAN001082_RS25070;Dbxref=GenBank:WP_001188509.1;Name=WP_001188509.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463186.1;locus_tag=CFSAN001082_RS25070;product=transcriptional regulator;protein_id=WP_001188509.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	47573	47648	.	+	.	ID=gene-CFSAN001082_RS25075;Name=CFSAN001082_RS25075;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS25075;old_locus_tag=CFSAN001082_t00980
NZ_APAH01000009.1	tRNAscan-SE	tRNA	47573	47648	.	+	.	ID=rna-CFSAN001082_RS25075;Parent=gene-CFSAN001082_RS25075;anticodon=(pos:47606..47608);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS25075;product=tRNA-Phe
NZ_APAH01000009.1	tRNAscan-SE	exon	47573	47648	.	+	.	ID=exon-CFSAN001082_RS25075-1;Parent=rna-CFSAN001082_RS25075;anticodon=(pos:47606..47608);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS25075;product=tRNA-Phe
NZ_APAH01000009.1	RefSeq	pseudogene	47728	47802	.	-	.	ID=gene-CFSAN001082_RS46385;Name=CFSAN001082_RS46385;end_range=47802,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46385;partial=true;pseudo=true
NZ_APAH01000009.1	Protein Homology	CDS	47728	47802	.	-	0	ID=cds-CFSAN001082_RS46385;Parent=gene-CFSAN001082_RS46385;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=47802,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003842122.1;locus_tag=CFSAN001082_RS46385;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	48359	49111	.	+	.	ID=gene-CFSAN001082_RS25080;Name=CFSAN001082_RS25080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25080;old_locus_tag=CFSAN001082_00912
NZ_APAH01000009.1	Protein Homology	CDS	48359	49111	.	+	0	ID=cds-WP_000842426.1;Parent=gene-CFSAN001082_RS25080;Dbxref=GenBank:WP_000842426.1;Name=WP_000842426.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463184.1;locus_tag=CFSAN001082_RS25080;product=non-specific acid phosphatase;protein_id=WP_000842426.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	49243	50091	.	-	.	ID=gene-CFSAN001082_RS25085;Name=CFSAN001082_RS25085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25085;old_locus_tag=CFSAN001082_00917
NZ_APAH01000009.1	Protein Homology	CDS	49243	50091	.	-	0	ID=cds-WP_023253734.1;Parent=gene-CFSAN001082_RS25085;Dbxref=GenBank:WP_023253734.1;Name=WP_023253734.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000175395.1;locus_tag=CFSAN001082_RS25085;product=SdiA-regulated domain-containing protein;protein_id=WP_023253734.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	50117	50278	.	-	.	ID=gene-CFSAN001082_RS48495;Name=CFSAN001082_RS48495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48495;old_locus_tag=CFSAN001082_00922
NZ_APAH01000009.1	GeneMarkS-2+	CDS	50117	50278	.	-	0	ID=cds-WP_187646654.1;Parent=gene-CFSAN001082_RS48495;Dbxref=GenBank:WP_187646654.1;Name=WP_187646654.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48495;product=hypothetical protein;protein_id=WP_187646654.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	50539	50751	.	-	.	ID=gene-CFSAN001082_RS25090;Name=CFSAN001082_RS25090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25090;old_locus_tag=CFSAN001082_00927
NZ_APAH01000009.1	Protein Homology	CDS	50539	50751	.	-	0	ID=cds-WP_000063793.1;Parent=gene-CFSAN001082_RS25090;Dbxref=GenBank:WP_000063793.1;Name=WP_000063793.1;Ontology_term=GO:0006355;gbkey=CDS;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000063792.1;locus_tag=CFSAN001082_RS25090;product=FaeA/PapI family transcriptional regulator;protein_id=WP_000063793.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	50824	51408	.	-	.	ID=gene-CFSAN001082_RS0122775;Name=CFSAN001082_RS0122775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0122775
NZ_APAH01000009.1	Protein Homology	CDS	50824	51408	.	-	0	ID=cds-WP_024150234.1;Parent=gene-CFSAN001082_RS0122775;Dbxref=GenBank:WP_024150234.1;Name=WP_024150234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001576642.1;locus_tag=CFSAN001082_RS0122775;product=hypothetical protein;protein_id=WP_024150234.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	51830	52594	.	-	.	ID=gene-CFSAN001082_RS25095;Name=CFSAN001082_RS25095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25095;old_locus_tag=CFSAN001082_00932
NZ_APAH01000009.1	Protein Homology	CDS	51830	52594	.	-	0	ID=cds-WP_017441222.1;Parent=gene-CFSAN001082_RS25095;Dbxref=GenBank:WP_017441222.1;Name=WP_017441222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000827659.1;locus_tag=CFSAN001082_RS25095;product=K88 minor fimbrial subunit faeI;protein_id=WP_017441222.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	52622	53419	.	-	.	ID=gene-CFSAN001082_RS25100;Name=faeH;gbkey=Gene;gene=faeH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25100;old_locus_tag=CFSAN001082_00937
NZ_APAH01000009.1	Protein Homology	CDS	52622	53419	.	-	0	ID=cds-WP_023253736.1;Parent=gene-CFSAN001082_RS25100;Dbxref=GenBank:WP_023253736.1;Name=WP_023253736.1;gbkey=CDS;gene=faeH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000704720.1;locus_tag=CFSAN001082_RS25100;product=F4 (K88) fimbria minor subunit FaeH;protein_id=WP_023253736.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	53638	54417	.	-	.	ID=gene-CFSAN001082_RS25105;Name=CFSAN001082_RS25105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25105;old_locus_tag=CFSAN001082_00942
NZ_APAH01000009.1	Protein Homology	CDS	53638	54417	.	-	0	ID=cds-WP_023253737.1;Parent=gene-CFSAN001082_RS25105;Dbxref=GenBank:WP_023253737.1;Name=WP_023253737.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001723900.1;locus_tag=CFSAN001082_RS25105;product=K88 fimbrial protein AC;protein_id=WP_023253737.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	54635	55126	.	-	.	ID=gene-CFSAN001082_RS25110;Name=CFSAN001082_RS25110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25110;old_locus_tag=CFSAN001082_00947
NZ_APAH01000009.1	Protein Homology	CDS	54635	55126	.	-	0	ID=cds-WP_023253738.1;Parent=gene-CFSAN001082_RS25110;Dbxref=GenBank:WP_023253738.1;Name=WP_023253738.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000709796.1;locus_tag=CFSAN001082_RS25110;product=DUF5462 family protein;protein_id=WP_023253738.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	55162	55953	.	-	.	ID=gene-CFSAN001082_RS25115;Name=CFSAN001082_RS25115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25115;old_locus_tag=CFSAN001082_00952
NZ_APAH01000009.1	Protein Homology	CDS	55162	55953	.	-	0	ID=cds-WP_023253739.1;Parent=gene-CFSAN001082_RS25115;Dbxref=GenBank:WP_023253739.1;Name=WP_023253739.1;Ontology_term=GO:0071555,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000044489.1;locus_tag=CFSAN001082_RS25115;product=fimbria/pilus periplasmic chaperone;protein_id=WP_023253739.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	55946	58348	.	-	.	ID=gene-CFSAN001082_RS25120;Name=faeD;gbkey=Gene;gene=faeD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25120;old_locus_tag=CFSAN001082_00957
NZ_APAH01000009.1	Protein Homology	CDS	55946	58348	.	-	0	ID=cds-WP_374750911.1;Parent=gene-CFSAN001082_RS25120;Dbxref=GenBank:WP_374750911.1;Name=WP_374750911.1;gbkey=CDS;gene=faeD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000466173.1;locus_tag=CFSAN001082_RS25120;product=F4 (K88) fimbrial usher FaeD;protein_id=WP_374750911.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	58394	58933	.	-	.	ID=gene-CFSAN001082_RS25125;Name=CFSAN001082_RS25125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25125;old_locus_tag=CFSAN001082_00962
NZ_APAH01000009.1	Protein Homology	CDS	58394	58933	.	-	0	ID=cds-WP_000721295.1;Parent=gene-CFSAN001082_RS25125;Dbxref=GenBank:WP_000721295.1;Name=WP_000721295.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000721294.1;locus_tag=CFSAN001082_RS25125;product=fimbrial protein;protein_id=WP_000721295.1;transl_table=11
NZ_APAH01000009.1	RefSeq	gene	58968	59258	.	-	.	ID=gene-CFSAN001082_RS25130;Name=CFSAN001082_RS25130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25130;old_locus_tag=CFSAN001082_00967
NZ_APAH01000009.1	Protein Homology	CDS	58968	59258	.	-	0	ID=cds-WP_000773469.1;Parent=gene-CFSAN001082_RS25130;Dbxref=GenBank:WP_000773469.1;Name=WP_000773469.1;Ontology_term=GO:0006355;gbkey=CDS;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000773469.1;locus_tag=CFSAN001082_RS25130;product=PapB/FocB family fimbrial expression transcriptional regulator;protein_id=WP_000773469.1;transl_table=11
##sequence-region NZ_APAH01000010.1 1 3306
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000010.1	RefSeq	region	1	3306	.	+	.	ID=NZ_APAH01000010.1:1..3306;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000010.1	RefSeq	gene	75	710	.	-	.	ID=gene-CFSAN001082_RS25135;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25135;old_locus_tag=CFSAN001082_00980
NZ_APAH01000010.1	Protein Homology	CDS	75	710	.	-	0	ID=cds-WP_001030318.1;Parent=gene-CFSAN001082_RS25135;Dbxref=GenBank:WP_001030318.1;Name=WP_001030318.1;Ontology_term=GO:0006284,GO:0003906;gbkey=CDS;gene=nth;go_function=DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460416.1;locus_tag=CFSAN001082_RS25135;product=endonuclease III;protein_id=WP_001030318.1;transl_table=11
NZ_APAH01000010.1	RefSeq	gene	710	1402	.	-	.	ID=gene-CFSAN001082_RS25140;Name=CFSAN001082_RS25140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25140;old_locus_tag=CFSAN001082_00985
NZ_APAH01000010.1	Protein Homology	CDS	710	1402	.	-	0	ID=cds-WP_001289628.1;Parent=gene-CFSAN001082_RS25140;Dbxref=GenBank:WP_001289628.1;Name=WP_001289628.1;Ontology_term=GO:0022900;gbkey=CDS;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460417.1;locus_tag=CFSAN001082_RS25140;product=electron transport complex subunit E;protein_id=WP_001289628.1;transl_table=11
NZ_APAH01000010.1	RefSeq	gene	1405	2025	.	-	.	ID=gene-CFSAN001082_RS25145;Name=rsxG;gbkey=Gene;gene=rsxG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25145;old_locus_tag=CFSAN001082_00990
NZ_APAH01000010.1	Protein Homology	CDS	1405	2025	.	-	0	ID=cds-WP_000920822.1;Parent=gene-CFSAN001082_RS25145;Dbxref=GenBank:WP_000920822.1;Name=WP_000920822.1;Ontology_term=GO:0022900,GO:0009055,GO:0010181,GO:0016020;gbkey=CDS;gene=rsxG;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,FMN binding|0010181||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460418.1;locus_tag=CFSAN001082_RS25145;product=electron transport complex subunit RsxG;protein_id=WP_000920822.1;transl_table=11
NZ_APAH01000010.1	RefSeq	gene	2029	3087	.	-	.	ID=gene-CFSAN001082_RS25150;Name=rsxD;gbkey=Gene;gene=rsxD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25150;old_locus_tag=CFSAN001082_00995
NZ_APAH01000010.1	Protein Homology	CDS	2029	3087	.	-	0	ID=cds-WP_000231891.1;Parent=gene-CFSAN001082_RS25150;Dbxref=GenBank:WP_000231891.1;Name=WP_000231891.1;Ontology_term=GO:0022900,GO:0055085,GO:0016020;gbkey=CDS;gene=rsxD;go_component=membrane|0016020||IEA;go_process=electron transport chain|0022900||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460419.1;locus_tag=CFSAN001082_RS25150;product=electron transport complex subunit RsxD;protein_id=WP_000231891.1;transl_table=11
NZ_APAH01000010.1	RefSeq	pseudogene	3088	3306	.	-	.	ID=gene-CFSAN001082_RS25155;Name=CFSAN001082_RS25155;end_range=3306,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS25155;old_locus_tag=CFSAN001082_01000;partial=true;pseudo=true
NZ_APAH01000010.1	Protein Homology	CDS	3088	3306	.	-	0	ID=cds-CFSAN001082_RS25155;Parent=gene-CFSAN001082_RS25155;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=3306,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016505351.1;locus_tag=CFSAN001082_RS25155;partial=true;product=electron transport complex subunit RsxC;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000011.1 1 8097
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000011.1	RefSeq	region	1	8097	.	+	.	ID=NZ_APAH01000011.1:1..8097;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000011.1	RefSeq	pseudogene	1	154	.	-	.	ID=gene-CFSAN001082_RS48095;Name=CFSAN001082_RS48095;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48095;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000011.1	Protein Homology	CDS	1	154	.	-	0	ID=cds-CFSAN001082_RS48095;Parent=gene-CFSAN001082_RS48095;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460911.1;locus_tag=CFSAN001082_RS48095;partial=true;product=lysine-N-methylase;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000011.1	RefSeq	gene	233	1750	.	-	.	ID=gene-CFSAN001082_RS25165;Name=CFSAN001082_RS25165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25165;old_locus_tag=CFSAN001082_01010
NZ_APAH01000011.1	Protein Homology	CDS	233	1750	.	-	0	ID=cds-WP_023253743.1;Parent=gene-CFSAN001082_RS25165;Dbxref=GenBank:WP_023253743.1;Name=WP_023253743.1;Ontology_term=GO:0071973,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000079837.1;locus_tag=CFSAN001082_RS25165;product=flagellin;protein_id=WP_023253743.1;transl_table=11
NZ_APAH01000011.1	RefSeq	gene	1768	2007	.	-	.	ID=gene-CFSAN001082_RS25170;Name=CFSAN001082_RS25170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25170;old_locus_tag=CFSAN001082_01015
NZ_APAH01000011.1	GeneMarkS-2+	CDS	1768	2007	.	-	0	ID=cds-WP_001141165.1;Parent=gene-CFSAN001082_RS25170;Dbxref=GenBank:WP_001141165.1;Name=WP_001141165.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS25170;product=hypothetical protein;protein_id=WP_001141165.1;transl_table=11
NZ_APAH01000011.1	RefSeq	gene	2006	3412	.	+	.	ID=gene-CFSAN001082_RS25175;Name=fliD;gbkey=Gene;gene=fliD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25175;old_locus_tag=CFSAN001082_01020
NZ_APAH01000011.1	Protein Homology	CDS	2006	3412	.	+	0	ID=cds-WP_023253744.1;Parent=gene-CFSAN001082_RS25175;Dbxref=GenBank:WP_023253744.1;Name=WP_023253744.1;Ontology_term=GO:0007155,GO:0009288,GO:0009421;gbkey=CDS;gene=fliD;go_component=bacterial-type flagellum|0009288||IEA,bacterial-type flagellum filament cap|0009421||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460913.1;locus_tag=CFSAN001082_RS25175;product=flagellar filament capping protein FliD;protein_id=WP_023253744.1;transl_table=11
NZ_APAH01000011.1	RefSeq	gene	3427	3834	.	+	.	ID=gene-CFSAN001082_RS25180;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25180;old_locus_tag=CFSAN001082_01025
NZ_APAH01000011.1	Protein Homology	CDS	3427	3834	.	+	0	ID=cds-WP_000287764.1;Parent=gene-CFSAN001082_RS25180;Dbxref=GenBank:WP_000287764.1;Name=WP_000287764.1;Ontology_term=GO:0044780;gbkey=CDS;gene=fliS;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460914.1;locus_tag=CFSAN001082_RS25180;product=flagellar export chaperone FliS;protein_id=WP_000287764.1;transl_table=11
NZ_APAH01000011.1	RefSeq	gene	3834	4202	.	+	.	ID=gene-CFSAN001082_RS25185;Name=fliT;gbkey=Gene;gene=fliT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25185;old_locus_tag=CFSAN001082_01030
NZ_APAH01000011.1	Protein Homology	CDS	3834	4202	.	+	0	ID=cds-WP_000204899.1;Parent=gene-CFSAN001082_RS25185;Dbxref=GenBank:WP_000204899.1;Name=WP_000204899.1;Ontology_term=GO:0006605,GO:0044780,GO:1902209;gbkey=CDS;gene=fliT;go_process=protein targeting|0006605||IEA,bacterial-type flagellum assembly|0044780||IEA,negative regulation of bacterial-type flagellum assembly|1902209||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460915.1;locus_tag=CFSAN001082_RS25185;product=flagella biosynthesis regulatory protein FliT;protein_id=WP_000204899.1;transl_table=11
NZ_APAH01000011.1	RefSeq	gene	4274	5758	.	+	.	ID=gene-CFSAN001082_RS25190;Name=amyA;gbkey=Gene;gene=amyA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25190;old_locus_tag=CFSAN001082_01035
NZ_APAH01000011.1	Protein Homology	CDS	4274	5758	.	+	0	ID=cds-WP_000795489.1;Parent=gene-CFSAN001082_RS25190;Dbxref=GenBank:WP_000795489.1;Name=WP_000795489.1;Ontology_term=GO:0005975,GO:0004553,GO:0005509;gbkey=CDS;gene=amyA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA,calcium ion binding|0005509||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460916.1;locus_tag=CFSAN001082_RS25190;product=alpha-amylase;protein_id=WP_000795489.1;transl_table=11
NZ_APAH01000011.1	RefSeq	gene	5798	6211	.	-	.	ID=gene-CFSAN001082_RS25195;Name=yedD;gbkey=Gene;gene=yedD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25195;old_locus_tag=CFSAN001082_01040
NZ_APAH01000011.1	Protein Homology	CDS	5798	6211	.	-	0	ID=cds-WP_000754694.1;Parent=gene-CFSAN001082_RS25195;Dbxref=GenBank:WP_000754694.1;Name=WP_000754694.1;gbkey=CDS;gene=yedD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000754699.1;locus_tag=CFSAN001082_RS25195;product=lipoprotein YedD;protein_id=WP_000754694.1;transl_table=11
NZ_APAH01000011.1	RefSeq	gene	6397	7602	.	+	.	ID=gene-CFSAN001082_RS25200;Name=yedE;gbkey=Gene;gene=yedE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25200;old_locus_tag=CFSAN001082_01045
NZ_APAH01000011.1	Protein Homology	CDS	6397	7602	.	+	0	ID=cds-WP_023253745.1;Parent=gene-CFSAN001082_RS25200;Dbxref=GenBank:WP_023253745.1;Name=WP_023253745.1;gbkey=CDS;gene=yedE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016156840.1;locus_tag=CFSAN001082_RS25200;product=selenium metabolism membrane protein YedE/FdhT;protein_id=WP_023253745.1;transl_table=11
NZ_APAH01000011.1	RefSeq	gene	7599	7832	.	+	.	ID=gene-CFSAN001082_RS25205;Name=yedF;gbkey=Gene;gene=yedF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25205;old_locus_tag=CFSAN001082_01050
NZ_APAH01000011.1	Protein Homology	CDS	7599	7832	.	+	0	ID=cds-WP_000790504.1;Parent=gene-CFSAN001082_RS25205;Dbxref=GenBank:WP_000790504.1;Name=WP_000790504.1;gbkey=CDS;gene=yedF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310696.1;locus_tag=CFSAN001082_RS25205;product=sulfurtransferase-like selenium metabolism protein YedF;protein_id=WP_000790504.1;transl_table=11
##sequence-region NZ_APAH01000012.1 1 8181
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000012.1	RefSeq	region	1	8181	.	+	.	ID=NZ_APAH01000012.1:1..8181;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000012.1	RefSeq	gene	285	995	.	+	.	ID=gene-CFSAN001082_RS25210;Name=osmY;gbkey=Gene;gene=osmY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25210;old_locus_tag=CFSAN001082_01055
NZ_APAH01000012.1	Protein Homology	CDS	285	995	.	+	0	ID=cds-WP_000556891.1;Parent=gene-CFSAN001082_RS25210;Dbxref=GenBank:WP_000556891.1;Name=WP_000556891.1;gbkey=CDS;gene=osmY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460454.1;locus_tag=CFSAN001082_RS25210;product=osmoprotectant ABC transporter permease OsmY;protein_id=WP_000556891.1;transl_table=11
NZ_APAH01000012.1	RefSeq	gene	1024	1926	.	+	.	ID=gene-CFSAN001082_RS25215;Name=osmX;gbkey=Gene;gene=osmX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25215;old_locus_tag=CFSAN001082_01060
NZ_APAH01000012.1	Protein Homology	CDS	1024	1926	.	+	0	ID=cds-WP_001211193.1;Parent=gene-CFSAN001082_RS25215;Dbxref=GenBank:WP_001211193.1;Name=WP_001211193.1;gbkey=CDS;gene=osmX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460453.1;locus_tag=CFSAN001082_RS25215;product=osmoprotectant ABC transporter substrate-binding protein OsmX;protein_id=WP_001211193.1;transl_table=11
NZ_APAH01000012.1	RefSeq	gene	1936	2583	.	+	.	ID=gene-CFSAN001082_RS25220;Name=osmW;gbkey=Gene;gene=osmW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25220;old_locus_tag=CFSAN001082_01065
NZ_APAH01000012.1	Protein Homology	CDS	1936	2583	.	+	0	ID=cds-WP_023253746.1;Parent=gene-CFSAN001082_RS25220;Dbxref=GenBank:WP_023253746.1;Name=WP_023253746.1;gbkey=CDS;gene=osmW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460452.1;locus_tag=CFSAN001082_RS25220;product=osmoprotectant ABC transporter permease OsmW;protein_id=WP_023253746.1;transl_table=11
NZ_APAH01000012.1	RefSeq	gene	2583	3731	.	+	.	ID=gene-CFSAN001082_RS25225;Name=osmV;gbkey=Gene;gene=osmV;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25225;old_locus_tag=CFSAN001082_01070
NZ_APAH01000012.1	Protein Homology	CDS	2583	3731	.	+	0	ID=cds-WP_023253747.1;Parent=gene-CFSAN001082_RS25225;Dbxref=GenBank:WP_023253747.1;Name=WP_023253747.1;gbkey=CDS;gene=osmV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460451.1;locus_tag=CFSAN001082_RS25225;product=osmoprotectant ABC transporter ATP-binding protein OsmV;protein_id=WP_023253747.1;transl_table=11
NZ_APAH01000012.1	RefSeq	gene	3867	5156	.	+	.	ID=gene-CFSAN001082_RS25230;Name=clcB;gbkey=Gene;gene=clcB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25230;old_locus_tag=CFSAN001082_01075
NZ_APAH01000012.1	Protein Homology	CDS	3867	5156	.	+	0	ID=cds-WP_031612574.1;Parent=gene-CFSAN001082_RS25230;Dbxref=GenBank:WP_031612574.1;Name=WP_031612574.1;Ontology_term=GO:0006821,GO:0010447,GO:0005247,GO:0016020;gbkey=CDS;gene=clcB;go_component=membrane|0016020||IEA;go_function=voltage-gated chloride channel activity|0005247||IEA;go_process=chloride transport|0006821||IEA,response to acidic pH|0010447||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460450.3;locus_tag=CFSAN001082_RS25230;product=voltage-gated ClC-type chloride channel ClcB;protein_id=WP_031612574.1;transl_table=11
NZ_APAH01000012.1	RefSeq	gene	5112	5807	.	-	.	ID=gene-CFSAN001082_RS25235;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25235;old_locus_tag=CFSAN001082_01080
NZ_APAH01000012.1	Protein Homology	CDS	5112	5807	.	-	0	ID=cds-WP_000919210.1;Parent=gene-CFSAN001082_RS25235;Dbxref=GenBank:WP_000919210.1;Name=WP_000919210.1;Ontology_term=GO:0009102,GO:0000287,GO:0004141,GO:0005524;gbkey=CDS;gene=bioD;go_function=magnesium ion binding|0000287||IEA,dethiobiotin synthase activity|0004141||IEA,ATP binding|0005524||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460449.1;locus_tag=CFSAN001082_RS25235;product=dethiobiotin synthase;protein_id=WP_000919210.1;transl_table=11
NZ_APAH01000012.1	RefSeq	gene	5933	7153	.	-	.	ID=gene-CFSAN001082_RS25240;Name=mlc;gbkey=Gene;gene=mlc;gene_biotype=protein_coding;gene_synonym=dgsA;locus_tag=CFSAN001082_RS25240;old_locus_tag=CFSAN001082_01085
NZ_APAH01000012.1	Protein Homology	CDS	5933	7153	.	-	0	ID=cds-WP_000225094.1;Parent=gene-CFSAN001082_RS25240;Dbxref=GenBank:WP_000225094.1;Name=WP_000225094.1;Ontology_term=GO:0006355,GO:0003677,GO:0046872;gbkey=CDS;gene=mlc;go_function=DNA binding|0003677||IEA,metal ion binding|0046872||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460448.1;locus_tag=CFSAN001082_RS25240;product=sugar metabolism global transcriptional regulator Mlc;protein_id=WP_000225094.1;transl_table=11
NZ_APAH01000012.1	RefSeq	gene	7281	8180	.	-	.	ID=gene-CFSAN001082_RS25245;Name=CFSAN001082_RS25245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25245;old_locus_tag=CFSAN001082_01090
NZ_APAH01000012.1	Protein Homology	CDS	7281	8180	.	-	0	ID=cds-WP_001019577.1;Parent=gene-CFSAN001082_RS25245;Dbxref=GenBank:WP_001019577.1;Name=WP_001019577.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460447.1;locus_tag=CFSAN001082_RS25245;product=LysR family transcriptional regulator;protein_id=WP_001019577.1;transl_table=11
##sequence-region NZ_APAH01000013.1 1 780
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000013.1	RefSeq	region	1	780	.	+	.	ID=NZ_APAH01000013.1:1..780;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000013.1	RefSeq	gene	17	577	.	-	.	ID=gene-CFSAN001082_RS25250;Name=stfA;gbkey=Gene;gene=stfA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25250;old_locus_tag=CFSAN001082_01095
NZ_APAH01000013.1	Protein Homology	CDS	17	577	.	-	0	ID=cds-WP_001090554.1;Parent=gene-CFSAN001082_RS25250;Dbxref=GenBank:WP_001090554.1;Name=WP_001090554.1;gbkey=CDS;gene=stfA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459200.1;locus_tag=CFSAN001082_RS25250;product=fimbrial major subunit StfA;protein_id=WP_001090554.1;transl_table=11
##sequence-region NZ_APAH01000014.1 1 790
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000014.1	RefSeq	region	1	790	.	+	.	ID=NZ_APAH01000014.1:1..790;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000014.1	RefSeq	gene	1	716	.	+	.	ID=gene-CFSAN001082_RS25255;Name=envF;gbkey=Gene;gene=envF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25255;old_locus_tag=CFSAN001082_01100;partial=true;start_range=.,1
NZ_APAH01000014.1	Protein Homology	CDS	1	716	.	+	2	ID=cds-WP_023253749.1;Parent=gene-CFSAN001082_RS25255;Dbxref=GenBank:WP_023253749.1;Name=WP_023253749.1;gbkey=CDS;gene=envF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460210.1;locus_tag=CFSAN001082_RS25255;partial=true;product=putative envelope lipoprotein EnvF;protein_id=WP_023253749.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000015.1 1 23050
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000015.1	RefSeq	region	1	23050	.	+	.	ID=NZ_APAH01000015.1:1..23050;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000015.1	RefSeq	gene	354	965	.	+	.	ID=gene-CFSAN001082_RS25260;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25260;old_locus_tag=CFSAN001082_01105
NZ_APAH01000015.1	Protein Homology	CDS	354	965	.	+	0	ID=cds-WP_000580335.1;Parent=gene-CFSAN001082_RS25260;Dbxref=GenBank:WP_000580335.1;Name=WP_000580335.1;Ontology_term=GO:0006281,GO:0006310,GO:0003678,GO:0009378,GO:0009379;gbkey=CDS;gene=ruvA;go_component=Holliday junction helicase complex|0009379||IEA;go_function=DNA helicase activity|0003678||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012131997.1;locus_tag=CFSAN001082_RS25260;product=Holliday junction branch migration protein RuvA;protein_id=WP_000580335.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	974	1984	.	+	.	ID=gene-CFSAN001082_RS25265;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25265;old_locus_tag=CFSAN001082_01110
NZ_APAH01000015.1	Protein Homology	CDS	974	1984	.	+	0	ID=cds-WP_000568504.1;Parent=gene-CFSAN001082_RS25265;Dbxref=GenBank:WP_000568504.1;Name=WP_000568504.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0005524,GO:0009378;gbkey=CDS;gene=ruvB;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460851.1;locus_tag=CFSAN001082_RS25265;product=Holliday junction branch migration DNA helicase RuvB;protein_id=WP_000568504.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	2063	2848	.	-	.	ID=gene-CFSAN001082_RS25270;Name=znuB;gbkey=Gene;gene=znuB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25270;old_locus_tag=CFSAN001082_01115
NZ_APAH01000015.1	Protein Homology	CDS	2063	2848	.	-	0	ID=cds-WP_000571508.1;Parent=gene-CFSAN001082_RS25270;Dbxref=GenBank:WP_000571508.1;Name=WP_000571508.1;Ontology_term=GO:0055085,GO:0042626;gbkey=CDS;gene=znuB;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460850.1;locus_tag=CFSAN001082_RS25270;product=zinc ABC transporter permease subunit ZnuB;protein_id=WP_000571508.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	2845	3600	.	-	.	ID=gene-CFSAN001082_RS25275;Name=znuC;gbkey=Gene;gene=znuC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25275;old_locus_tag=CFSAN001082_01120
NZ_APAH01000015.1	Protein Homology	CDS	2845	3600	.	-	0	ID=cds-WP_023195450.1;Parent=gene-CFSAN001082_RS25275;Dbxref=GenBank:WP_023195450.1;Name=WP_023195450.1;Ontology_term=GO:0006829,GO:0005524,GO:0015633;gbkey=CDS;gene=znuC;go_function=ATP binding|0005524||IEA,ABC-type zinc transporter activity|0015633||IEA;go_process=zinc ion transport|0006829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310595.1;locus_tag=CFSAN001082_RS25275;product=zinc ABC transporter ATP-binding protein ZnuC;protein_id=WP_023195450.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	3679	4623	.	+	.	ID=gene-CFSAN001082_RS25280;Name=znuA;gbkey=Gene;gene=znuA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25280;old_locus_tag=CFSAN001082_01125
NZ_APAH01000015.1	Protein Homology	CDS	3679	4623	.	+	0	ID=cds-WP_000939597.1;Parent=gene-CFSAN001082_RS25280;Dbxref=GenBank:WP_000939597.1;Name=WP_000939597.1;Ontology_term=GO:0006829,GO:0046872;gbkey=CDS;gene=znuA;go_function=metal ion binding|0046872||IEA;go_process=zinc ion transport|0006829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416371.4;locus_tag=CFSAN001082_RS25280;product=zinc ABC transporter substrate-binding protein ZnuA;protein_id=WP_000939597.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	4639	5958	.	+	.	ID=gene-CFSAN001082_RS25285;Name=mepM;gbkey=Gene;gene=mepM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25285;old_locus_tag=CFSAN001082_01130
NZ_APAH01000015.1	Protein Homology	CDS	4639	5958	.	+	0	ID=cds-WP_001184028.1;Parent=gene-CFSAN001082_RS25285;Dbxref=GenBank:WP_001184028.1;Name=WP_001184028.1;Ontology_term=GO:0042834;gbkey=CDS;gene=mepM;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460847.1;locus_tag=CFSAN001082_RS25285;product=murein DD-endopeptidase MepM;protein_id=WP_001184028.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	6075	7046	.	+	.	ID=gene-CFSAN001082_RS25290;Name=lpxM;gbkey=Gene;gene=lpxM;gene_biotype=protein_coding;gene_synonym=msbB;locus_tag=CFSAN001082_RS25290;old_locus_tag=CFSAN001082_01140
NZ_APAH01000015.1	Protein Homology	CDS	6075	7046	.	+	0	ID=cds-WP_000448401.1;Parent=gene-CFSAN001082_RS25290;Dbxref=GenBank:WP_000448401.1;Name=WP_000448401.1;Note=LpxM is lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase%2C an enzyme characterized in Escherichia coli and involved in biosynthesis of the form of lipid A found in that species and some closely related species.;Ontology_term=GO:0009103,GO:0016747,GO:0009276,GO:0016020;gbkey=CDS;gene=lpxM;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA,membrane|0016020||IEA;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460846.1;locus_tag=CFSAN001082_RS25290;product=lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase;protein_id=WP_000448401.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	7119	8561	.	-	.	ID=gene-CFSAN001082_RS25295;Name=pyk;gbkey=Gene;gene=pyk;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25295;old_locus_tag=CFSAN001082_01145
NZ_APAH01000015.1	Protein Homology	CDS	7119	8561	.	-	0	ID=cds-WP_000091156.1;Parent=gene-CFSAN001082_RS25295;Dbxref=GenBank:WP_000091156.1;Name=WP_000091156.1;Ontology_term=GO:0006096,GO:0000287,GO:0004743,GO:0030955;gbkey=CDS;gene=pyk;go_function=magnesium ion binding|0000287||IEA,pyruvate kinase activity|0004743||IEA,potassium ion binding|0030955||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120709.1;locus_tag=CFSAN001082_RS25295;product=pyruvate kinase;protein_id=WP_000091156.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	8685	9554	.	-	.	ID=gene-CFSAN001082_RS25300;Name=CFSAN001082_RS25300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25300;old_locus_tag=CFSAN001082_01150
NZ_APAH01000015.1	Protein Homology	CDS	8685	9554	.	-	0	ID=cds-WP_001056719.1;Parent=gene-CFSAN001082_RS25300;Dbxref=GenBank:WP_001056719.1;Name=WP_001056719.1;Ontology_term=GO:0006351,GO:0006355,GO:0003677,GO:0003700,GO:0097367;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,carbohydrate derivative binding|0097367||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460844.1;locus_tag=CFSAN001082_RS25300;product=MurR/RpiR family transcriptional regulator;protein_id=WP_001056719.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	9896	11371	.	+	.	ID=gene-CFSAN001082_RS25305;Name=zwf;gbkey=Gene;gene=zwf;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25305;old_locus_tag=CFSAN001082_01155
NZ_APAH01000015.1	Protein Homology	CDS	9896	11371	.	+	0	ID=cds-WP_000301711.1;Parent=gene-CFSAN001082_RS25305;Dbxref=GenBank:WP_000301711.1;Name=WP_000301711.1;Ontology_term=GO:0006006,GO:0006098,GO:0004345,GO:0016614,GO:0050661;gbkey=CDS;gene=zwf;go_function=glucose-6-phosphate dehydrogenase activity|0004345||IEA,oxidoreductase activity%2C acting on CH-OH group of donors|0016614||IEA,NADP binding|0050661||IEA;go_process=glucose metabolic process|0006006||IEA,pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120712.1;locus_tag=CFSAN001082_RS25305;product=glucose-6-phosphate dehydrogenase;protein_id=WP_000301711.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	11606	13417	.	+	.	ID=gene-CFSAN001082_RS25310;Name=edd;gbkey=Gene;gene=edd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25310;old_locus_tag=CFSAN001082_01160
NZ_APAH01000015.1	Protein Homology	CDS	11606	13417	.	+	0	ID=cds-WP_001069124.1;Parent=gene-CFSAN001082_RS25310;Dbxref=GenBank:WP_001069124.1;Name=WP_001069124.1;Ontology_term=GO:0009255,GO:0004456;gbkey=CDS;gene=edd;go_function=phosphogluconate dehydratase activity|0004456||IEA;go_process=Entner-Doudoroff pathway through 6-phosphogluconate|0009255||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460842.1;locus_tag=CFSAN001082_RS25310;product=phosphogluconate dehydratase;protein_id=WP_001069124.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	13455	14096	.	+	.	ID=gene-CFSAN001082_RS25315;Name=kdgA;gbkey=Gene;gene=kdgA;gene_biotype=protein_coding;gene_synonym=eda;locus_tag=CFSAN001082_RS25315;old_locus_tag=CFSAN001082_01165
NZ_APAH01000015.1	Protein Homology	CDS	13455	14096	.	+	0	ID=cds-WP_000800494.1;Parent=gene-CFSAN001082_RS25315;Dbxref=GenBank:WP_000800494.1;Name=WP_000800494.1;gbkey=CDS;gene=kdgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460841.1;locus_tag=CFSAN001082_RS25315;product=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_000800494.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	14196	15374	.	-	.	ID=gene-CFSAN001082_RS25320;Name=purT;gbkey=Gene;gene=purT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25320;old_locus_tag=CFSAN001082_01170
NZ_APAH01000015.1	Protein Homology	CDS	14196	15374	.	-	0	ID=cds-WP_000173427.1;Parent=gene-CFSAN001082_RS25320;Dbxref=GenBank:WP_000173427.1;Name=WP_000173427.1;Ontology_term=GO:0009152,GO:0000287,GO:0004644,GO:0005524;gbkey=CDS;gene=purT;go_function=magnesium ion binding|0000287||IEA,phosphoribosylglycinamide formyltransferase activity|0004644||IEA,ATP binding|0005524||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460840.1;locus_tag=CFSAN001082_RS25320;product=formate-dependent phosphoribosylglycinamide formyltransferase;protein_id=WP_000173427.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	15507	15797	.	+	.	ID=gene-CFSAN001082_RS25325;Name=yebG;gbkey=Gene;gene=yebG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25325;old_locus_tag=CFSAN001082_01175
NZ_APAH01000015.1	Protein Homology	CDS	15507	15797	.	+	0	ID=cds-WP_000257723.1;Parent=gene-CFSAN001082_RS25325;Dbxref=GenBank:WP_000257723.1;Name=WP_000257723.1;gbkey=CDS;gene=yebG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460839.1;locus_tag=CFSAN001082_RS25325;product=DNA damage-inducible protein YebG;protein_id=WP_000257723.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	15865	16218	.	+	.	ID=gene-CFSAN001082_RS25330;Name=yebF;gbkey=Gene;gene=yebF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25330;old_locus_tag=CFSAN001082_01180
NZ_APAH01000015.1	Protein Homology	CDS	15865	16218	.	+	0	ID=cds-WP_001042123.1;Parent=gene-CFSAN001082_RS25330;Dbxref=GenBank:WP_001042123.1;Name=WP_001042123.1;gbkey=CDS;gene=yebF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460838.1;locus_tag=CFSAN001082_RS25330;product=protein YebF;protein_id=WP_001042123.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	16312	16971	.	+	.	ID=gene-CFSAN001082_RS25335;Name=CFSAN001082_RS25335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25335;old_locus_tag=CFSAN001082_01185
NZ_APAH01000015.1	Protein Homology	CDS	16312	16971	.	+	0	ID=cds-WP_000024707.1;Parent=gene-CFSAN001082_RS25335;Dbxref=GenBank:WP_000024707.1;Name=WP_000024707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460837.1;locus_tag=CFSAN001082_RS25335;product=tellurite resistance TerB family protein;protein_id=WP_000024707.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	17184	19235	.	+	.	ID=gene-CFSAN001082_RS25340;Name=ptrB;gbkey=Gene;gene=ptrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25340;old_locus_tag=CFSAN001082_01190
NZ_APAH01000015.1	Protein Homology	CDS	17184	19235	.	+	0	ID=cds-WP_001604737.1;Parent=gene-CFSAN001082_RS25340;Dbxref=GenBank:WP_001604737.1;Name=WP_001604737.1;gbkey=CDS;gene=ptrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460836.1;locus_tag=CFSAN001082_RS25340;product=oligopeptidase B;protein_id=WP_001604737.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	19270	19968	.	-	.	ID=gene-CFSAN001082_RS25345;Name=exoX;gbkey=Gene;gene=exoX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25345;old_locus_tag=CFSAN001082_01195
NZ_APAH01000015.1	Protein Homology	CDS	19270	19968	.	-	0	ID=cds-WP_000944282.1;Parent=gene-CFSAN001082_RS25345;Dbxref=GenBank:WP_000944282.1;Name=WP_000944282.1;gbkey=CDS;gene=exoX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460835.1;locus_tag=CFSAN001082_RS25345;product=exodeoxyribonuclease X;protein_id=WP_000944282.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	19992	20648	.	-	.	ID=gene-CFSAN001082_RS25350;Name=CFSAN001082_RS25350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25350;old_locus_tag=CFSAN001082_01200
NZ_APAH01000015.1	Protein Homology	CDS	19992	20648	.	-	0	ID=cds-WP_000100256.1;Parent=gene-CFSAN001082_RS25350;Dbxref=GenBank:WP_000100256.1;Name=WP_000100256.1;Ontology_term=GO:0008152;gbkey=CDS;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460834.1;locus_tag=CFSAN001082_RS25350;product=nitrilase-related carbon-nitrogen hydrolase;protein_id=WP_000100256.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	20756	20986	.	-	.	ID=gene-CFSAN001082_RS25355;Name=CFSAN001082_RS25355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25355;old_locus_tag=CFSAN001082_01205
NZ_APAH01000015.1	Protein Homology	CDS	20756	20986	.	-	0	ID=cds-WP_000856224.1;Parent=gene-CFSAN001082_RS25355;Dbxref=GenBank:WP_000856224.1;Name=WP_000856224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460833.1;locus_tag=CFSAN001082_RS25355;product=DNA polymerase III subunit theta;protein_id=WP_000856224.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	21124	21498	.	+	.	ID=gene-CFSAN001082_RS25360;Name=yobA;gbkey=Gene;gene=yobA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25360;old_locus_tag=CFSAN001082_01210
NZ_APAH01000015.1	Protein Homology	CDS	21124	21498	.	+	0	ID=cds-WP_000168393.1;Parent=gene-CFSAN001082_RS25360;Dbxref=GenBank:WP_000168393.1;Name=WP_000168393.1;Ontology_term=GO:0006825,GO:0046688,GO:0005507;gbkey=CDS;gene=yobA;go_function=copper ion binding|0005507||IEA;go_process=copper ion transport|0006825||IEA,response to copper ion|0046688||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460832.1;locus_tag=CFSAN001082_RS25360;product=CopC domain-containing protein YobA;protein_id=WP_000168393.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	21499	22374	.	+	.	ID=gene-CFSAN001082_RS25365;Name=copD;gbkey=Gene;gene=copD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25365;old_locus_tag=CFSAN001082_01215
NZ_APAH01000015.1	Protein Homology	CDS	21499	22374	.	+	0	ID=cds-WP_077911119.1;Parent=gene-CFSAN001082_RS25365;Dbxref=GenBank:WP_077911119.1;Name=WP_077911119.1;Ontology_term=GO:0006825,GO:0016020;gbkey=CDS;gene=copD;go_component=membrane|0016020||IEA;go_process=copper ion transport|0006825||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460831.1;locus_tag=CFSAN001082_RS25365;product=copper homeostasis membrane protein CopD;protein_id=WP_077911119.1;transl_table=11
NZ_APAH01000015.1	RefSeq	gene	22391	22744	.	+	.	ID=gene-CFSAN001082_RS25370;Name=CFSAN001082_RS25370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25370;old_locus_tag=CFSAN001082_01220
NZ_APAH01000015.1	Protein Homology	CDS	22391	22744	.	+	0	ID=cds-WP_000722368.1;Parent=gene-CFSAN001082_RS25370;Dbxref=GenBank:WP_000722368.1;Name=WP_000722368.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460830.1;locus_tag=CFSAN001082_RS25370;product=YebY family protein;protein_id=WP_000722368.1;transl_table=11
##sequence-region NZ_APAH01000016.1 1 2115
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000016.1	RefSeq	region	1	2115	.	+	.	ID=NZ_APAH01000016.1:1..2115;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000016.1	RefSeq	gene	136	384	.	+	.	ID=gene-CFSAN001082_RS25380;Name=CFSAN001082_RS25380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25380;old_locus_tag=CFSAN001082_01230
NZ_APAH01000016.1	Protein Homology	CDS	136	384	.	+	0	ID=cds-WP_000208086.1;Parent=gene-CFSAN001082_RS25380;Dbxref=GenBank:WP_000208086.1;Name=WP_000208086.1;Ontology_term=GO:0071468,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=cellular response to acidic pH|0071468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460233.1;locus_tag=CFSAN001082_RS25380;product=biofilm/acid-resistance regulator YmgB/AriR;protein_id=WP_000208086.1;transl_table=11
NZ_APAH01000016.1	RefSeq	gene	639	1487	.	-	.	ID=gene-CFSAN001082_RS25385;Name=CFSAN001082_RS25385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25385;old_locus_tag=CFSAN001082_01235
NZ_APAH01000016.1	Protein Homology	CDS	639	1487	.	-	0	ID=cds-WP_000190263.1;Parent=gene-CFSAN001082_RS25385;Dbxref=GenBank:WP_000190263.1;Name=WP_000190263.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460232.1;locus_tag=CFSAN001082_RS25385;product=MerR family transcriptional regulator;protein_id=WP_000190263.1;transl_table=11
NZ_APAH01000016.1	RefSeq	gene	1556	2115	.	-	.	ID=gene-CFSAN001082_RS25390;Name=CFSAN001082_RS25390;end_range=2115,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25390;old_locus_tag=CFSAN001082_01240;partial=true
NZ_APAH01000016.1	Protein Homology	CDS	1556	2115	.	-	2	ID=cds-WP_023253751.1;Parent=gene-CFSAN001082_RS25390;Dbxref=GenBank:WP_023253751.1;Name=WP_023253751.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;end_range=2115,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460231.1;locus_tag=CFSAN001082_RS25390;partial=true;product=helix-turn-helix domain-containing protein;protein_id=WP_023253751.1;transl_table=11
##sequence-region NZ_APAH01000017.1 1 444
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000017.1	RefSeq	region	1	444	.	+	.	ID=NZ_APAH01000017.1:1..444;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000018.1 1 2245
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000018.1	RefSeq	region	1	2245	.	+	.	ID=NZ_APAH01000018.1:1..2245;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000018.1	RefSeq	gene	102	1457	.	-	.	ID=gene-CFSAN001082_RS25395;Name=CFSAN001082_RS25395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25395;old_locus_tag=CFSAN001082_01245
NZ_APAH01000018.1	Protein Homology	CDS	102	1457	.	-	0	ID=cds-WP_023253752.1;Parent=gene-CFSAN001082_RS25395;Dbxref=GenBank:WP_023253752.1;Name=WP_023253752.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016505871.1;locus_tag=CFSAN001082_RS25395;product=restriction endonuclease subunit S;protein_id=WP_023253752.1;transl_table=11
NZ_APAH01000018.1	RefSeq	gene	1454	2245	.	-	.	ID=gene-CFSAN001082_RS25400;Name=CFSAN001082_RS25400;end_range=2245,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25400;old_locus_tag=CFSAN001082_01250;partial=true
NZ_APAH01000018.1	Protein Homology	CDS	1454	2245	.	-	0	ID=cds-WP_023253753.1;Parent=gene-CFSAN001082_RS25400;Dbxref=GenBank:WP_023253753.1;Name=WP_023253753.1;Ontology_term=GO:0003677,GO:0008170;end_range=2245,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,N-methyltransferase activity|0008170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418769.1;locus_tag=CFSAN001082_RS25400;partial=true;product=N-6 DNA methylase;protein_id=WP_023253753.1;transl_table=11
##sequence-region NZ_APAH01000019.1 1 8379
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000019.1	RefSeq	region	1	8379	.	+	.	ID=NZ_APAH01000019.1:1..8379;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000019.1	RefSeq	gene	1	113	.	-	.	ID=gene-CFSAN001082_RS48670;Name=CFSAN001082_RS48670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48670;old_locus_tag=CFSAN001082_01255;partial=true;start_range=.,1
NZ_APAH01000019.1	Protein Homology	CDS	1	113	.	-	0	ID=cds-WP_023253754.1;Parent=gene-CFSAN001082_RS48670;Dbxref=GenBank:WP_023253754.1;Name=WP_023253754.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461222.1;locus_tag=CFSAN001082_RS48670;partial=true;product=hypothetical protein;protein_id=WP_023253754.1;start_range=.,1;transl_table=11
NZ_APAH01000019.1	RefSeq	gene	275	1153	.	+	.	ID=gene-CFSAN001082_RS25405;Name=CFSAN001082_RS25405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25405;old_locus_tag=CFSAN001082_01260
NZ_APAH01000019.1	Protein Homology	CDS	275	1153	.	+	0	ID=cds-WP_023253755.1;Parent=gene-CFSAN001082_RS25405;Dbxref=GenBank:WP_023253755.1;Name=WP_023253755.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461223.1;locus_tag=CFSAN001082_RS25405;product=LysR family transcriptional regulator;protein_id=WP_023253755.1;transl_table=11
NZ_APAH01000019.1	RefSeq	gene	1269	2339	.	-	.	ID=gene-CFSAN001082_RS25410;Name=glpQ;gbkey=Gene;gene=glpQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25410;old_locus_tag=CFSAN001082_01265
NZ_APAH01000019.1	Protein Homology	CDS	1269	2339	.	-	0	ID=cds-WP_023195825.1;Parent=gene-CFSAN001082_RS25410;Dbxref=GenBank:WP_023195825.1;Name=WP_023195825.1;Ontology_term=GO:0006629,GO:0008081;gbkey=CDS;gene=glpQ;go_function=phosphoric diester hydrolase activity|0008081||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461224.1;locus_tag=CFSAN001082_RS25410;product=glycerophosphodiester phosphodiesterase;protein_id=WP_023195825.1;transl_table=11
NZ_APAH01000019.1	RefSeq	gene	2344	3702	.	-	.	ID=gene-CFSAN001082_RS25415;Name=glpT;gbkey=Gene;gene=glpT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25415;old_locus_tag=CFSAN001082_01270
NZ_APAH01000019.1	Protein Homology	CDS	2344	3702	.	-	0	ID=cds-WP_000948739.1;Parent=gene-CFSAN001082_RS25415;Dbxref=GenBank:WP_000948739.1;Name=WP_000948739.1;Ontology_term=GO:0015794,GO:0015169,GO:0016020;gbkey=CDS;gene=glpT;go_component=membrane|0016020||IEA;go_function=glycerol-3-phosphate transmembrane transporter activity|0015169||IEA;go_process=glycerol-3-phosphate transmembrane transport|0015794||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461225.1;locus_tag=CFSAN001082_RS25415;product=glycerol-3-phosphate transporter;protein_id=WP_000948739.1;transl_table=11
NZ_APAH01000019.1	RefSeq	gene	3975	5603	.	+	.	ID=gene-CFSAN001082_RS25420;Name=glpA;gbkey=Gene;gene=glpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25420;old_locus_tag=CFSAN001082_01275
NZ_APAH01000019.1	Protein Homology	CDS	3975	5603	.	+	0	ID=cds-WP_023195766.1;Parent=gene-CFSAN001082_RS25420;Dbxref=GenBank:WP_023195766.1;Name=WP_023195766.1;Ontology_term=GO:0006072,GO:0046174,GO:0004368,GO:0010181,GO:0050660,GO:0009331;gbkey=CDS;gene=glpA;go_component=glycerol-3-phosphate dehydrogenase (FAD) complex|0009331||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA,FMN binding|0010181||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA,polyol catabolic process|0046174||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461226.1;locus_tag=CFSAN001082_RS25420;product=anaerobic glycerol-3-phosphate dehydrogenase subunit A;protein_id=WP_023195766.1;transl_table=11
NZ_APAH01000019.1	RefSeq	gene	5593	6852	.	+	.	ID=gene-CFSAN001082_RS25425;Name=glpB;gbkey=Gene;gene=glpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25425;old_locus_tag=CFSAN001082_01280
NZ_APAH01000019.1	Protein Homology	CDS	5593	6852	.	+	0	ID=cds-WP_023253756.1;Parent=gene-CFSAN001082_RS25425;Dbxref=GenBank:WP_023253756.1;Name=WP_023253756.1;Ontology_term=GO:0004368;gbkey=CDS;gene=glpB;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461227.1;locus_tag=CFSAN001082_RS25425;product=glycerol-3-phosphate dehydrogenase subunit GlpB;protein_id=WP_023253756.1;transl_table=11
NZ_APAH01000019.1	RefSeq	gene	6849	8039	.	+	.	ID=gene-CFSAN001082_RS25430;Name=glpC;gbkey=Gene;gene=glpC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25430;old_locus_tag=CFSAN001082_01285
NZ_APAH01000019.1	Protein Homology	CDS	6849	8039	.	+	0	ID=cds-WP_001285726.1;Parent=gene-CFSAN001082_RS25430;Dbxref=GenBank:WP_001285726.1;Name=WP_001285726.1;Ontology_term=GO:0006071,GO:0009061,GO:0004368,GO:0051536,GO:0009331,GO:0016020;gbkey=CDS;gene=glpC;go_component=glycerol-3-phosphate dehydrogenase (FAD) complex|0009331||IEA,membrane|0016020||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=glycerol metabolic process|0006071||IEA,anaerobic respiration|0009061||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461228.1;locus_tag=CFSAN001082_RS25430;product=anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC;protein_id=WP_001285726.1;transl_table=11
##sequence-region NZ_APAH01000020.1 1 267
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000020.1	RefSeq	region	1	267	.	+	.	ID=NZ_APAH01000020.1:1..267;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000020.1	RefSeq	pseudogene	1	267	.	+	.	ID=gene-CFSAN001082_RS25435;Name=ssaU;end_range=267,.;gbkey=Gene;gene=ssaU;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS25435;old_locus_tag=CFSAN001082_01290;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000020.1	Protein Homology	CDS	1	267	.	+	2	ID=cds-CFSAN001082_RS25435;Parent=gene-CFSAN001082_RS25435;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=267,.;gbkey=CDS;gene=ssaU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460387.1;locus_tag=CFSAN001082_RS25435;partial=true;product=SPI-2 type III secretion system apparatus protein SsaU;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000021.1 1 1008
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000021.1	RefSeq	region	1	1008	.	+	.	ID=NZ_APAH01000021.1:1..1008;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000021.1	RefSeq	gene	49	582	.	+	.	ID=gene-CFSAN001082_RS25440;Name=yehD;gbkey=Gene;gene=yehD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25440;old_locus_tag=CFSAN001082_01295
NZ_APAH01000021.1	Protein Homology	CDS	49	582	.	+	0	ID=cds-WP_000830690.1;Parent=gene-CFSAN001082_RS25440;Dbxref=GenBank:WP_000830690.1;Name=WP_000830690.1;gbkey=CDS;gene=yehD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000830679.1;locus_tag=CFSAN001082_RS25440;product=fimbrial protein YehD;protein_id=WP_000830690.1;transl_table=11
NZ_APAH01000021.1	RefSeq	gene	644	1008	.	+	.	ID=gene-CFSAN001082_RS25445;Name=CFSAN001082_RS25445;end_range=1008,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25445;old_locus_tag=CFSAN001082_01300;partial=true
NZ_APAH01000021.1	Protein Homology	CDS	644	1008	.	+	0	ID=cds-WP_023253758.1;Parent=gene-CFSAN001082_RS25445;Dbxref=GenBank:WP_023253758.1;Name=WP_023253758.1;Ontology_term=GO:0071555,GO:0030288;end_range=1008,.;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000871810.1;locus_tag=CFSAN001082_RS25445;partial=true;product=fimbria/pilus periplasmic chaperone;protein_id=WP_023253758.1;transl_table=11
##sequence-region NZ_APAH01000022.1 1 255
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000022.1	RefSeq	region	1	255	.	+	.	ID=NZ_APAH01000022.1:1..255;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000023.1 1 298
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000023.1	RefSeq	region	1	298	.	+	.	ID=NZ_APAH01000023.1:1..298;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000023.1	RefSeq	gene	1	298	.	-	.	ID=gene-CFSAN001082_RS46420;Name=CFSAN001082_RS46420;end_range=298,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46420;old_locus_tag=CFSAN001082_01310;partial=true;start_range=.,1
NZ_APAH01000023.1	Protein Homology	CDS	1	298	.	-	0	ID=cds-WP_023253760.1;Parent=gene-CFSAN001082_RS46420;Dbxref=GenBank:WP_023253760.1;Name=WP_023253760.1;end_range=298,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835222.1;locus_tag=CFSAN001082_RS46420;partial=true;product=DUF4765 family protein;protein_id=WP_023253760.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000024.1 1 74341
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000024.1	RefSeq	region	1	74341	.	+	.	ID=NZ_APAH01000024.1:1..74341;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000024.1	RefSeq	gene	223	903	.	+	.	ID=gene-CFSAN001082_RS25455;Name=CFSAN001082_RS25455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25455;old_locus_tag=CFSAN001082_01315
NZ_APAH01000024.1	Protein Homology	CDS	223	903	.	+	0	ID=cds-WP_000106461.1;Parent=gene-CFSAN001082_RS25455;Dbxref=GenBank:WP_000106461.1;Name=WP_000106461.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462660.1;locus_tag=CFSAN001082_RS25455;product=isochorismatase family protein;protein_id=WP_000106461.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	1066	1545	.	-	.	ID=gene-CFSAN001082_RS25460;Name=cigR;gbkey=Gene;gene=cigR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25460;old_locus_tag=CFSAN001082_01320
NZ_APAH01000024.1	Protein Homology	CDS	1066	1545	.	-	0	ID=cds-WP_023195519.1;Parent=gene-CFSAN001082_RS25460;Dbxref=GenBank:WP_023195519.1;Name=WP_023195519.1;gbkey=CDS;gene=cigR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462661.1;locus_tag=CFSAN001082_RS25460;product=anti-virulence regulatory inner membrane protein CigR;protein_id=WP_023195519.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	1647	1733	.	-	.	ID=gene-CFSAN001082_RS49055;Name=mgtU;gbkey=Gene;gene=mgtU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49055
NZ_APAH01000024.1	Protein Homology	CDS	1647	1733	.	-	0	ID=cds-WP_252515021.1;Parent=gene-CFSAN001082_RS49055;Dbxref=GenBank:WP_252515021.1;Name=WP_252515021.1;gbkey=CDS;gene=mgtU;inference=COORDINATES: similar to AA sequence:RefSeq:WP_251009859.1;locus_tag=CFSAN001082_RS49055;product=magnesium transporter protection protein MgtU;protein_id=WP_252515021.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	1746	1838	.	-	.	ID=gene-CFSAN001082_RS48100;Name=mgtR;gbkey=Gene;gene=mgtR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48100;old_locus_tag=CFSAN001082_01325
NZ_APAH01000024.1	Protein Homology	CDS	1746	1838	.	-	0	ID=cds-WP_001082117.1;Parent=gene-CFSAN001082_RS48100;Dbxref=GenBank:WP_001082117.1;Name=WP_001082117.1;gbkey=CDS;gene=mgtR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001082117.1;locus_tag=CFSAN001082_RS48100;product=protein MgtR;protein_id=WP_001082117.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	1860	4586	.	-	.	ID=gene-CFSAN001082_RS25465;Name=mgtA;gbkey=Gene;gene=mgtA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25465;old_locus_tag=CFSAN001082_01330
NZ_APAH01000024.1	Protein Homology	CDS	1860	4586	.	-	0	ID=cds-WP_023195520.1;Parent=gene-CFSAN001082_RS25465;Dbxref=GenBank:WP_023195520.1;Name=WP_023195520.1;Ontology_term=GO:0015693,GO:0015444,GO:0016020;gbkey=CDS;gene=mgtA;go_component=membrane|0016020||IEA;go_function=P-type magnesium transporter activity|0015444||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462662.1;locus_tag=CFSAN001082_RS25465;product=magnesium-translocating P-type ATPase;protein_id=WP_023195520.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	4806	5501	.	-	.	ID=gene-CFSAN001082_RS25470;Name=CFSAN001082_RS25470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25470;old_locus_tag=CFSAN001082_01335
NZ_APAH01000024.1	Protein Homology	CDS	4806	5501	.	-	0	ID=cds-WP_000392692.1;Parent=gene-CFSAN001082_RS25470;Dbxref=GenBank:WP_000392692.1;Name=WP_000392692.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462663.1;locus_tag=CFSAN001082_RS25470;product=MgtC family protein;protein_id=WP_000392692.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	6007	6909	.	+	.	ID=gene-CFSAN001082_RS25475;Name=CFSAN001082_RS25475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25475;old_locus_tag=CFSAN001082_01340
NZ_APAH01000024.1	Protein Homology	CDS	6007	6909	.	+	0	ID=cds-WP_000535970.1;Parent=gene-CFSAN001082_RS25475;Dbxref=GenBank:WP_000535970.1;Name=WP_000535970.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462664.1;locus_tag=CFSAN001082_RS25475;product=EamA family transporter;protein_id=WP_000535970.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	6952	7893	.	-	.	ID=gene-CFSAN001082_RS25480;Name=CFSAN001082_RS25480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25480;old_locus_tag=CFSAN001082_01345
NZ_APAH01000024.1	Protein Homology	CDS	6952	7893	.	-	0	ID=cds-WP_023202921.1;Parent=gene-CFSAN001082_RS25480;Dbxref=GenBank:WP_023202921.1;Name=WP_023202921.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462665.1;locus_tag=CFSAN001082_RS25480;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_023202921.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	8129	8872	.	-	.	ID=gene-CFSAN001082_RS25485;Name=dagF;gbkey=Gene;gene=dagF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25485;old_locus_tag=CFSAN001082_01350
NZ_APAH01000024.1	Protein Homology	CDS	8129	8872	.	-	0	ID=cds-WP_001186147.1;Parent=gene-CFSAN001082_RS25485;Dbxref=GenBank:WP_001186147.1;Name=WP_001186147.1;Ontology_term=GO:0008675;gbkey=CDS;gene=dagF;go_function=2-dehydro-3-deoxy-phosphogluconate aldolase activity|0008675||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462666.1;locus_tag=CFSAN001082_RS25485;product=2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_001186147.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	8859	9968	.	-	.	ID=gene-CFSAN001082_RS25490;Name=dgaE;gbkey=Gene;gene=dgaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25490;old_locus_tag=CFSAN001082_01355
NZ_APAH01000024.1	Protein Homology	CDS	8859	9968	.	-	0	ID=cds-WP_023253761.1;Parent=gene-CFSAN001082_RS25490;Dbxref=GenBank:WP_023253761.1;Name=WP_023253761.1;Ontology_term=GO:0016829;gbkey=CDS;gene=dgaE;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462667.1;locus_tag=CFSAN001082_RS25490;product=D-glucosaminate-6-phosphate ammonia lyase;protein_id=WP_023253761.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	9972	10832	.	-	.	ID=gene-CFSAN001082_RS25495;Name=CFSAN001082_RS25495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25495;old_locus_tag=CFSAN001082_01360
NZ_APAH01000024.1	Protein Homology	CDS	9972	10832	.	-	0	ID=cds-WP_001526325.1;Parent=gene-CFSAN001082_RS25495;Dbxref=GenBank:WP_001526325.1;Name=WP_001526325.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462668.3;locus_tag=CFSAN001082_RS25495;product=PTS system mannose/fructose/sorbose family transporter subunit IID;protein_id=WP_001526325.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	10829	11578	.	-	.	ID=gene-CFSAN001082_RS25500;Name=CFSAN001082_RS25500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25500;old_locus_tag=CFSAN001082_01365
NZ_APAH01000024.1	Protein Homology	CDS	10829	11578	.	-	0	ID=cds-WP_000380259.1;Parent=gene-CFSAN001082_RS25500;Dbxref=GenBank:WP_000380259.1;Name=WP_000380259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462669.1;locus_tag=CFSAN001082_RS25500;product=PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC;protein_id=WP_000380259.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	11724	12209	.	-	.	ID=gene-CFSAN001082_RS25505;Name=CFSAN001082_RS25505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25505;old_locus_tag=CFSAN001082_01370
NZ_APAH01000024.1	Protein Homology	CDS	11724	12209	.	-	0	ID=cds-WP_001284295.1;Parent=gene-CFSAN001082_RS25505;Dbxref=GenBank:WP_001284295.1;Name=WP_001284295.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462670.1;locus_tag=CFSAN001082_RS25505;product=PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB;protein_id=WP_001284295.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	12220	12645	.	-	.	ID=gene-CFSAN001082_RS25510;Name=CFSAN001082_RS25510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25510;old_locus_tag=CFSAN001082_01375
NZ_APAH01000024.1	Protein Homology	CDS	12220	12645	.	-	0	ID=cds-WP_000214106.1;Parent=gene-CFSAN001082_RS25510;Dbxref=GenBank:WP_000214106.1;Name=WP_000214106.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462671.1;locus_tag=CFSAN001082_RS25510;product=PTS sugar transporter subunit IIA;protein_id=WP_000214106.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	12864	15662	.	-	.	ID=gene-CFSAN001082_RS25515;Name=dagR;gbkey=Gene;gene=dagR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25515;old_locus_tag=CFSAN001082_01380
NZ_APAH01000024.1	Protein Homology	CDS	12864	15662	.	-	0	ID=cds-WP_001252672.1;Parent=gene-CFSAN001082_RS25515;Dbxref=GenBank:WP_001252672.1;Name=WP_001252672.1;Ontology_term=GO:0006355,GO:0009401,GO:0005524,GO:0016887;gbkey=CDS;gene=dagR;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462672.1;locus_tag=CFSAN001082_RS25515;product=transcriptional regulator DagR;protein_id=WP_001252672.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	15859	16152	.	+	.	ID=gene-CFSAN001082_RS25520;Name=CFSAN001082_RS25520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25520;old_locus_tag=CFSAN001082_01385
NZ_APAH01000024.1	Protein Homology	CDS	15859	16152	.	+	0	ID=cds-WP_023253762.1;Parent=gene-CFSAN001082_RS25520;Dbxref=GenBank:WP_023253762.1;Name=WP_023253762.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462673.1;locus_tag=CFSAN001082_RS25520;product=YicS family protein;protein_id=WP_023253762.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	16258	17640	.	+	.	ID=gene-CFSAN001082_RS25525;Name=CFSAN001082_RS25525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25525;old_locus_tag=CFSAN001082_01390
NZ_APAH01000024.1	Protein Homology	CDS	16258	17640	.	+	0	ID=cds-WP_023253763.1;Parent=gene-CFSAN001082_RS25525;Dbxref=GenBank:WP_023253763.1;Name=WP_023253763.1;Ontology_term=GO:0005975,GO:0016798;gbkey=CDS;go_function=hydrolase activity%2C acting on glycosyl bonds|0016798||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462674.1;locus_tag=CFSAN001082_RS25525;product=glycoside hydrolase family 1 protein;protein_id=WP_023253763.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	17700	18893	.	-	.	ID=gene-CFSAN001082_RS25530;Name=nepI;gbkey=Gene;gene=nepI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25530;old_locus_tag=CFSAN001082_01395
NZ_APAH01000024.1	Protein Homology	CDS	17700	18893	.	-	0	ID=cds-WP_001004800.1;Parent=gene-CFSAN001082_RS25530;Dbxref=GenBank:WP_001004800.1;Name=WP_001004800.1;Ontology_term=GO:0015860,GO:0015211,GO:0016020;gbkey=CDS;gene=nepI;go_component=membrane|0016020||IEA;go_function=purine nucleoside transmembrane transporter activity|0015211||IEA;go_process=purine nucleoside transmembrane transport|0015860||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462675.1;locus_tag=CFSAN001082_RS25530;product=purine ribonucleoside efflux pump NepI;protein_id=WP_001004800.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	19109	19468	.	+	.	ID=gene-CFSAN001082_RS25535;Name=CFSAN001082_RS25535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25535;old_locus_tag=CFSAN001082_01400
NZ_APAH01000024.1	Protein Homology	CDS	19109	19468	.	+	0	ID=cds-WP_001217952.1;Parent=gene-CFSAN001082_RS25535;Dbxref=GenBank:WP_001217952.1;Name=WP_001217952.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462676.1;locus_tag=CFSAN001082_RS25535;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_001217952.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	19452	19775	.	+	.	ID=gene-CFSAN001082_RS25540;Name=CFSAN001082_RS25540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25540;old_locus_tag=CFSAN001082_01405
NZ_APAH01000024.1	Protein Homology	CDS	19452	19775	.	+	0	ID=cds-WP_001274837.1;Parent=gene-CFSAN001082_RS25540;Dbxref=GenBank:WP_001274837.1;Name=WP_001274837.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462677.1;locus_tag=CFSAN001082_RS25540;product=helix-turn-helix domain-containing protein;protein_id=WP_001274837.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	19866	20135	.	-	.	ID=gene-CFSAN001082_RS25545;Name=CFSAN001082_RS25545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25545;old_locus_tag=CFSAN001082_01410
NZ_APAH01000024.1	Protein Homology	CDS	19866	20135	.	-	0	ID=cds-WP_000621026.1;Parent=gene-CFSAN001082_RS25545;Dbxref=GenBank:WP_000621026.1;Name=WP_000621026.1;Ontology_term=GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462678.1;locus_tag=CFSAN001082_RS25545;product=HPr family phosphocarrier protein;protein_id=WP_000621026.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	20145	21005	.	-	.	ID=gene-CFSAN001082_RS25550;Name=CFSAN001082_RS25550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25550;old_locus_tag=CFSAN001082_01415
NZ_APAH01000024.1	Protein Homology	CDS	20145	21005	.	-	0	ID=cds-WP_001131798.1;Parent=gene-CFSAN001082_RS25550;Dbxref=GenBank:WP_001131798.1;Name=WP_001131798.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462679.1;locus_tag=CFSAN001082_RS25550;product=class II aldolase;protein_id=WP_001131798.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	21068	22552	.	-	.	ID=gene-CFSAN001082_RS25555;Name=CFSAN001082_RS25555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25555;old_locus_tag=CFSAN001082_01420
NZ_APAH01000024.1	Protein Homology	CDS	21068	22552	.	-	0	ID=cds-WP_001113551.1;Parent=gene-CFSAN001082_RS25555;Dbxref=GenBank:WP_001113551.1;Name=WP_001113551.1;Ontology_term=GO:0005975,GO:0016310,GO:0005524,GO:0019200;gbkey=CDS;go_function=ATP binding|0005524||IEA,carbohydrate kinase activity|0019200||IEA;go_process=carbohydrate metabolic process|0005975||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462680.1;locus_tag=CFSAN001082_RS25555;product=FGGY-family carbohydrate kinase;protein_id=WP_001113551.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	22545	23903	.	-	.	ID=gene-CFSAN001082_RS25560;Name=CFSAN001082_RS25560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25560;old_locus_tag=CFSAN001082_01425
NZ_APAH01000024.1	Protein Homology	CDS	22545	23903	.	-	0	ID=cds-WP_000997827.1;Parent=gene-CFSAN001082_RS25560;Dbxref=GenBank:WP_000997827.1;Name=WP_000997827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462681.1;locus_tag=CFSAN001082_RS25560;product=PTS galactitol transporter subunit IIC;protein_id=WP_000997827.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	23979	24266	.	-	.	ID=gene-CFSAN001082_RS25565;Name=CFSAN001082_RS25565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25565;old_locus_tag=CFSAN001082_01430
NZ_APAH01000024.1	Protein Homology	CDS	23979	24266	.	-	0	ID=cds-WP_023206750.1;Parent=gene-CFSAN001082_RS25565;Dbxref=GenBank:WP_023206750.1;Name=WP_023206750.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462682.1;locus_tag=CFSAN001082_RS25565;product=PTS sugar transporter subunit IIB;protein_id=WP_023206750.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	24263	24736	.	-	.	ID=gene-CFSAN001082_RS25570;Name=CFSAN001082_RS25570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25570;old_locus_tag=CFSAN001082_01435
NZ_APAH01000024.1	Protein Homology	CDS	24263	24736	.	-	0	ID=cds-WP_001152237.1;Parent=gene-CFSAN001082_RS25570;Dbxref=GenBank:WP_001152237.1;Name=WP_001152237.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462683.1;locus_tag=CFSAN001082_RS25570;product=PTS sugar transporter subunit IIA;protein_id=WP_001152237.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	24754	25497	.	-	.	ID=gene-CFSAN001082_RS25575;Name=CFSAN001082_RS25575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25575;old_locus_tag=CFSAN001082_01440
NZ_APAH01000024.1	Protein Homology	CDS	24754	25497	.	-	0	ID=cds-WP_000854956.1;Parent=gene-CFSAN001082_RS25575;Dbxref=GenBank:WP_000854956.1;Name=WP_000854956.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462684.1;locus_tag=CFSAN001082_RS25575;product=GntR family transcriptional regulator;protein_id=WP_000854956.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	25850	26302	.	-	.	ID=gene-CFSAN001082_RS25580;Name=CFSAN001082_RS25580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25580;old_locus_tag=CFSAN001082_01445
NZ_APAH01000024.1	Protein Homology	CDS	25850	26302	.	-	0	ID=cds-WP_001519640.1;Parent=gene-CFSAN001082_RS25580;Dbxref=GenBank:WP_001519640.1;Name=WP_001519640.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462685.1;locus_tag=CFSAN001082_RS25580;product=DUF1198 domain-containing protein;protein_id=WP_001519640.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	26495	27886	.	-	.	ID=gene-CFSAN001082_RS25585;Name=uhpT;gbkey=Gene;gene=uhpT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25585;old_locus_tag=CFSAN001082_01450
NZ_APAH01000024.1	Protein Homology	CDS	26495	27886	.	-	0	ID=cds-WP_000879181.1;Parent=gene-CFSAN001082_RS25585;Dbxref=GenBank:WP_000879181.1;Name=WP_000879181.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=uhpT;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462686.1;locus_tag=CFSAN001082_RS25585;product=hexose-6-phosphate:phosphate antiporter;protein_id=WP_000879181.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	28029	29357	.	-	.	ID=gene-CFSAN001082_RS25590;Name=CFSAN001082_RS25590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25590;old_locus_tag=CFSAN001082_01455
NZ_APAH01000024.1	Protein Homology	CDS	28029	29357	.	-	0	ID=cds-WP_017465921.1;Parent=gene-CFSAN001082_RS25590;Dbxref=GenBank:WP_017465921.1;Name=WP_017465921.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462687.1;locus_tag=CFSAN001082_RS25590;product=MFS transporter;protein_id=WP_017465921.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	29367	30869	.	-	.	ID=gene-CFSAN001082_RS25595;Name=uhpB;gbkey=Gene;gene=uhpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25595;old_locus_tag=CFSAN001082_01460
NZ_APAH01000024.1	Protein Homology	CDS	29367	30869	.	-	0	ID=cds-WP_023253764.1;Parent=gene-CFSAN001082_RS25595;Dbxref=GenBank:WP_023253764.1;Name=WP_023253764.1;Ontology_term=GO:0000160,GO:0000155;gbkey=CDS;gene=uhpB;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462688.1;locus_tag=CFSAN001082_RS25595;product=signal transduction histidine-protein kinase/phosphatase UhpB;protein_id=WP_023253764.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	30869	31459	.	-	.	ID=gene-CFSAN001082_RS25600;Name=uhpA;gbkey=Gene;gene=uhpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25600;old_locus_tag=CFSAN001082_01465
NZ_APAH01000024.1	Protein Homology	CDS	30869	31459	.	-	0	ID=cds-WP_000633672.1;Parent=gene-CFSAN001082_RS25600;Dbxref=GenBank:WP_000633672.1;Name=WP_000633672.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=uhpA;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462689.1;locus_tag=CFSAN001082_RS25600;product=transcriptional regulator UhpA;protein_id=WP_000633672.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	31534	32547	.	-	.	ID=gene-CFSAN001082_RS25605;Name=CFSAN001082_RS25605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25605;old_locus_tag=CFSAN001082_01470
NZ_APAH01000024.1	Protein Homology	CDS	31534	32547	.	-	0	ID=cds-WP_023201714.1;Parent=gene-CFSAN001082_RS25605;Dbxref=GenBank:WP_023201714.1;Name=WP_023201714.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462690.1;locus_tag=CFSAN001082_RS25605;product=aldose 1-epimerase family protein;protein_id=WP_023201714.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	32559	33875	.	-	.	ID=gene-CFSAN001082_RS25610;Name=fucP;gbkey=Gene;gene=fucP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25610;old_locus_tag=CFSAN001082_01475
NZ_APAH01000024.1	Protein Homology	CDS	32559	33875	.	-	0	ID=cds-WP_000998359.1;Parent=gene-CFSAN001082_RS25610;Dbxref=GenBank:WP_000998359.1;Name=WP_000998359.1;Ontology_term=GO:0015756,GO:0015150,GO:0015535;gbkey=CDS;gene=fucP;go_function=fucose transmembrane transporter activity|0015150||IEA,fucose:proton symporter activity|0015535||IEA;go_process=fucose transmembrane transport|0015756||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462691.1;locus_tag=CFSAN001082_RS25610;product=L-fucose:H+ symporter permease;protein_id=WP_000998359.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	33906	34826	.	-	.	ID=gene-CFSAN001082_RS25615;Name=rbsK;gbkey=Gene;gene=rbsK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25615;old_locus_tag=CFSAN001082_01480
NZ_APAH01000024.1	Protein Homology	CDS	33906	34826	.	-	0	ID=cds-WP_000350272.1;Parent=gene-CFSAN001082_RS25615;Dbxref=GenBank:WP_000350272.1;Name=WP_000350272.1;Ontology_term=GO:0006014,GO:0004747;gbkey=CDS;gene=rbsK;go_function=ribokinase activity|0004747||IEA;go_process=D-ribose metabolic process|0006014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462692.1;locus_tag=CFSAN001082_RS25615;product=ribokinase;protein_id=WP_000350272.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	35151	35936	.	+	.	ID=gene-CFSAN001082_RS25620;Name=CFSAN001082_RS25620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25620;old_locus_tag=CFSAN001082_01485
NZ_APAH01000024.1	Protein Homology	CDS	35151	35936	.	+	0	ID=cds-WP_023253765.1;Parent=gene-CFSAN001082_RS25620;Dbxref=GenBank:WP_023253765.1;Name=WP_023253765.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462693.1;locus_tag=CFSAN001082_RS25620;product=DeoR family transcriptional regulator;protein_id=WP_023253765.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	35938	36228	.	-	.	ID=gene-CFSAN001082_RS25625;Name=ilvN;gbkey=Gene;gene=ilvN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25625;old_locus_tag=CFSAN001082_01490
NZ_APAH01000024.1	Protein Homology	CDS	35938	36228	.	-	0	ID=cds-WP_001171826.1;Parent=gene-CFSAN001082_RS25625;Dbxref=GenBank:WP_001171826.1;Name=WP_001171826.1;gbkey=CDS;gene=ilvN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462694.1;locus_tag=CFSAN001082_RS25625;product=acetolactate synthase small subunit;protein_id=WP_001171826.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	36232	37920	.	-	.	ID=gene-CFSAN001082_RS25630;Name=ilvB;gbkey=Gene;gene=ilvB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25630;old_locus_tag=CFSAN001082_01495
NZ_APAH01000024.1	Protein Homology	CDS	36232	37920	.	-	0	ID=cds-WP_000168439.1;Parent=gene-CFSAN001082_RS25630;Dbxref=GenBank:WP_000168439.1;Name=WP_000168439.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvB;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462695.1;locus_tag=CFSAN001082_RS25630;product=acetolactate synthase large subunit;protein_id=WP_000168439.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	38027	38125	.	-	.	ID=gene-CFSAN001082_RS0122805;Name=ivbL;gbkey=Gene;gene=ivbL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0122805
NZ_APAH01000024.1	Protein Homology	CDS	38027	38125	.	-	0	ID=cds-WP_001541152.1;Parent=gene-CFSAN001082_RS0122805;Dbxref=GenBank:WP_001541152.1;Name=WP_001541152.1;gbkey=CDS;gene=ivbL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462696.1;locus_tag=CFSAN001082_RS0122805;product=ilvB operon leader peptide IvbL;protein_id=WP_001541152.1;transl_table=11
NZ_APAH01000024.1	RefSeq	pseudogene	38648	38762	.	+	.	ID=gene-CFSAN001082_RS48105;Name=CFSAN001082_RS48105;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48105;pseudo=true
NZ_APAH01000024.1	Protein Homology	CDS	38648	38762	.	+	0	ID=cds-CFSAN001082_RS48105;Parent=gene-CFSAN001082_RS48105;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009325922.1;locus_tag=CFSAN001082_RS48105;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	38759	38848	.	+	.	ID=gene-CFSAN001082_RS25635;Name=tisB;gbkey=Gene;gene=tisB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25635;old_locus_tag=CFSAN001082_01500
NZ_APAH01000024.1	Protein Homology	CDS	38759	38848	.	+	0	ID=cds-WP_000117642.1;Parent=gene-CFSAN001082_RS25635;Dbxref=GenBank:WP_000117642.1;Name=WP_000117642.1;gbkey=CDS;gene=tisB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_453107.1;locus_tag=CFSAN001082_RS25635;product=type I toxin-antitoxin system toxin TisB;protein_id=WP_000117642.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	38941	39801	.	+	.	ID=gene-CFSAN001082_RS25640;Name=CFSAN001082_RS25640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25640;old_locus_tag=CFSAN001082_01505
NZ_APAH01000024.1	Protein Homology	CDS	38941	39801	.	+	0	ID=cds-WP_077911120.1;Parent=gene-CFSAN001082_RS25640;Dbxref=GenBank:WP_077911120.1;Name=WP_077911120.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462698.3;locus_tag=CFSAN001082_RS25640;product=DMT family transporter;protein_id=WP_077911120.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	40004	41188	.	+	.	ID=gene-CFSAN001082_RS25645;Name=emrD;gbkey=Gene;gene=emrD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25645;old_locus_tag=CFSAN001082_01510
NZ_APAH01000024.1	Protein Homology	CDS	40004	41188	.	+	0	ID=cds-WP_000828737.1;Parent=gene-CFSAN001082_RS25645;Dbxref=GenBank:WP_000828737.1;Name=WP_000828737.1;gbkey=CDS;gene=emrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462699.1;locus_tag=CFSAN001082_RS25645;product=multidrug efflux MFS transporter EmrD;protein_id=WP_000828737.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	41115	42200	.	-	.	ID=gene-CFSAN001082_RS25650;Name=CFSAN001082_RS25650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25650;old_locus_tag=CFSAN001082_01515
NZ_APAH01000024.1	Protein Homology	CDS	41115	42200	.	-	0	ID=cds-WP_023253767.1;Parent=gene-CFSAN001082_RS25650;Dbxref=GenBank:WP_023253767.1;Name=WP_023253767.1;Ontology_term=GO:0000272,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=polysaccharide catabolic process|0000272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462700.1;locus_tag=CFSAN001082_RS25650;product=cellulase family glycosylhydrolase;protein_id=WP_023253767.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	42264	43187	.	-	.	ID=gene-CFSAN001082_RS25655;Name=dsdC;gbkey=Gene;gene=dsdC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25655;old_locus_tag=CFSAN001082_01520
NZ_APAH01000024.1	Protein Homology	CDS	42264	43187	.	-	0	ID=cds-WP_001522218.1;Parent=gene-CFSAN001082_RS25655;Dbxref=GenBank:WP_001522218.1;Name=WP_001522218.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=dsdC;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462701.1;locus_tag=CFSAN001082_RS25655;product=DNA-binding transcriptional regulator DsdC;protein_id=WP_001522218.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	43413	44750	.	+	.	ID=gene-CFSAN001082_RS25660;Name=dsdX;gbkey=Gene;gene=dsdX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25660;old_locus_tag=CFSAN001082_01525
NZ_APAH01000024.1	Protein Homology	CDS	43413	44750	.	+	0	ID=cds-WP_023253768.1;Parent=gene-CFSAN001082_RS25660;Dbxref=GenBank:WP_023253768.1;Name=WP_023253768.1;Ontology_term=GO:0035429,GO:0015128,GO:0016020;gbkey=CDS;gene=dsdX;go_component=membrane|0016020||IEA;go_function=gluconate transmembrane transporter activity|0015128||IEA;go_process=gluconate transmembrane transport|0035429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462702.1;locus_tag=CFSAN001082_RS25660;product=D-serine transporter DsdX;protein_id=WP_023253768.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	44768	46090	.	+	.	ID=gene-CFSAN001082_RS25665;Name=dsdA;gbkey=Gene;gene=dsdA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25665;old_locus_tag=CFSAN001082_01530
NZ_APAH01000024.1	Protein Homology	CDS	44768	46090	.	+	0	ID=cds-WP_023253769.1;Parent=gene-CFSAN001082_RS25665;Dbxref=GenBank:WP_023253769.1;Name=WP_023253769.1;Ontology_term=GO:0046416,GO:0008721,GO:0030170;gbkey=CDS;gene=dsdA;go_function=D-serine ammonia-lyase activity|0008721||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=D-amino acid metabolic process|0046416||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462703.1;locus_tag=CFSAN001082_RS25665;product=D-serine ammonia-lyase;protein_id=WP_023253769.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	46172	46702	.	-	.	ID=gene-CFSAN001082_RS25670;Name=CFSAN001082_RS25670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25670;old_locus_tag=CFSAN001082_01535
NZ_APAH01000024.1	Protein Homology	CDS	46172	46702	.	-	0	ID=cds-WP_017442041.1;Parent=gene-CFSAN001082_RS25670;Dbxref=GenBank:WP_017442041.1;Name=WP_017442041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462704.1;locus_tag=CFSAN001082_RS25670;product=radical SAM protein;protein_id=WP_017442041.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	46699	47061	.	-	.	ID=gene-CFSAN001082_RS25675;Name=CFSAN001082_RS25675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25675;old_locus_tag=CFSAN001082_01540
NZ_APAH01000024.1	Protein Homology	CDS	46699	47061	.	-	0	ID=cds-WP_001113454.1;Parent=gene-CFSAN001082_RS25675;Dbxref=GenBank:WP_001113454.1;Name=WP_001113454.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462705.1;locus_tag=CFSAN001082_RS25675;product=DUF202 domain-containing protein;protein_id=WP_001113454.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	47051	47398	.	-	.	ID=gene-CFSAN001082_RS25680;Name=CFSAN001082_RS25680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25680;old_locus_tag=CFSAN001082_01545
NZ_APAH01000024.1	Protein Homology	CDS	47051	47398	.	-	0	ID=cds-WP_000703964.1;Parent=gene-CFSAN001082_RS25680;Dbxref=GenBank:WP_000703964.1;Name=WP_000703964.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462706.1;locus_tag=CFSAN001082_RS25680;product=YidH family protein;protein_id=WP_000703964.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	47518	47835	.	-	.	ID=gene-CFSAN001082_RS48500;Name=CFSAN001082_RS48500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48500
NZ_APAH01000024.1	GeneMarkS-2+	CDS	47518	47835	.	-	0	ID=cds-WP_164997012.1;Parent=gene-CFSAN001082_RS48500;Dbxref=GenBank:WP_164997012.1;Name=WP_164997012.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48500;product=hypothetical protein;protein_id=WP_164997012.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	47842	49503	.	-	.	ID=gene-CFSAN001082_RS25685;Name=CFSAN001082_RS25685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25685;old_locus_tag=CFSAN001082_01555
NZ_APAH01000024.1	Protein Homology	CDS	47842	49503	.	-	0	ID=cds-WP_023253771.1;Parent=gene-CFSAN001082_RS25685;Dbxref=GenBank:WP_023253771.1;Name=WP_023253771.1;Ontology_term=GO:0006813,GO:0008324;gbkey=CDS;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462707.1;locus_tag=CFSAN001082_RS25685;product=putative transporter;protein_id=WP_023253771.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	49692	50120	.	-	.	ID=gene-CFSAN001082_RS25690;Name=ibpB;gbkey=Gene;gene=ibpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25690;old_locus_tag=CFSAN001082_01560
NZ_APAH01000024.1	Protein Homology	CDS	49692	50120	.	-	0	ID=cds-WP_001246919.1;Parent=gene-CFSAN001082_RS25690;Dbxref=GenBank:WP_001246919.1;Name=WP_001246919.1;Ontology_term=GO:0006950,GO:0051082;gbkey=CDS;gene=ibpB;go_function=unfolded protein binding|0051082||IEA;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462708.3;locus_tag=CFSAN001082_RS25690;product=small heat shock chaperone IbpB;protein_id=WP_001246919.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	50230	50643	.	-	.	ID=gene-CFSAN001082_RS25695;Name=ibpA;gbkey=Gene;gene=ibpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25695;old_locus_tag=CFSAN001082_01565
NZ_APAH01000024.1	Protein Homology	CDS	50230	50643	.	-	0	ID=cds-WP_001532742.1;Parent=gene-CFSAN001082_RS25695;Dbxref=GenBank:WP_001532742.1;Name=WP_001532742.1;Ontology_term=GO:0006950,GO:0051082;gbkey=CDS;gene=ibpA;go_function=unfolded protein binding|0051082||IEA;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006687722.1;locus_tag=CFSAN001082_RS25695;product=small heat shock chaperone IbpA;protein_id=WP_001532742.1;transl_table=11
NZ_APAH01000024.1	cmsearch	sequence_feature	50637	50710	.	-	.	ID=id-NZ_APAH01000024.1:50637..50710;Dbxref=RFAM:RF01832;Note=ROSE (Repression Of Heat Shock gene Expression) occurs in the 5'-region of heat shock genes and acts as an RNA thermometer to modulate expression.;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_APAH01000024.1	RefSeq	gene	50953	51285	.	+	.	ID=gene-CFSAN001082_RS0122825;Name=CFSAN001082_RS0122825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0122825;old_locus_tag=CFSAN001082_01570
NZ_APAH01000024.1	Protein Homology	CDS	50953	51285	.	+	0	ID=cds-WP_001543704.1;Parent=gene-CFSAN001082_RS0122825;Dbxref=GenBank:WP_001543704.1;Name=WP_001543704.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001675643.1;locus_tag=CFSAN001082_RS0122825;product=YceK/YidQ family lipoprotein;protein_id=WP_001543704.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	51287	52513	.	-	.	ID=gene-CFSAN001082_RS25700;Name=CFSAN001082_RS25700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25700;old_locus_tag=CFSAN001082_01575
NZ_APAH01000024.1	Protein Homology	CDS	51287	52513	.	-	0	ID=cds-WP_000809945.1;Parent=gene-CFSAN001082_RS25700;Dbxref=GenBank:WP_000809945.1;Name=WP_000809945.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462711.1;locus_tag=CFSAN001082_RS25700;product=DUF3748 domain-containing protein;protein_id=WP_000809945.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	52635	53678	.	-	.	ID=gene-CFSAN001082_RS25705;Name=CFSAN001082_RS25705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25705;old_locus_tag=CFSAN001082_01580
NZ_APAH01000024.1	Protein Homology	CDS	52635	53678	.	-	0	ID=cds-WP_023253772.1;Parent=gene-CFSAN001082_RS25705;Dbxref=GenBank:WP_023253772.1;Name=WP_023253772.1;Ontology_term=GO:0017004,GO:0015035,GO:0046872,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=protein-disulfide reductase activity|0015035||IEA,metal ion binding|0046872||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462712.1;locus_tag=CFSAN001082_RS25705;product=cytochrome c-type biogenesis protein CcmH;protein_id=WP_023253772.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	53675	54232	.	-	.	ID=gene-CFSAN001082_RS25710;Name=dsbE;gbkey=Gene;gene=dsbE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25710;old_locus_tag=CFSAN001082_01585
NZ_APAH01000024.1	Protein Homology	CDS	53675	54232	.	-	0	ID=cds-WP_000828285.1;Parent=gene-CFSAN001082_RS25710;Dbxref=GenBank:WP_000828285.1;Name=WP_000828285.1;gbkey=CDS;gene=dsbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461191.1;locus_tag=CFSAN001082_RS25710;product=thiol:disulfide interchange protein DsbE;protein_id=WP_000828285.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	54229	56160	.	-	.	ID=gene-CFSAN001082_RS25715;Name=CFSAN001082_RS25715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25715;old_locus_tag=CFSAN001082_01590
NZ_APAH01000024.1	Protein Homology	CDS	54229	56160	.	-	0	ID=cds-WP_023215043.1;Parent=gene-CFSAN001082_RS25715;Dbxref=GenBank:WP_023215043.1;Name=WP_023215043.1;Ontology_term=GO:0017004,GO:0015232,GO:0020037,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=heme transmembrane transporter activity|0015232||IEA,heme binding|0020037||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461192.1;locus_tag=CFSAN001082_RS25715;product=heme lyase CcmF/NrfE family subunit;protein_id=WP_023215043.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	56157	56636	.	-	.	ID=gene-CFSAN001082_RS25720;Name=ccmE;gbkey=Gene;gene=ccmE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25720;old_locus_tag=CFSAN001082_01595
NZ_APAH01000024.1	Protein Homology	CDS	56157	56636	.	-	0	ID=cds-WP_001053600.1;Parent=gene-CFSAN001082_RS25720;Dbxref=GenBank:WP_001053600.1;Name=WP_001053600.1;gbkey=CDS;gene=ccmE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461193.1;locus_tag=CFSAN001082_RS25720;product=cytochrome c maturation protein CcmE;protein_id=WP_001053600.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	56633	56845	.	-	.	ID=gene-CFSAN001082_RS25725;Name=ccmD;gbkey=Gene;gene=ccmD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25725;old_locus_tag=CFSAN001082_01600
NZ_APAH01000024.1	Protein Homology	CDS	56633	56845	.	-	0	ID=cds-WP_000074111.1;Parent=gene-CFSAN001082_RS25725;Dbxref=GenBank:WP_000074111.1;Name=WP_000074111.1;Ontology_term=GO:0015886,GO:0017004,GO:0016020;gbkey=CDS;gene=ccmD;go_component=membrane|0016020||IEA;go_process=heme transport|0015886||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461194.1;locus_tag=CFSAN001082_RS25725;product=heme exporter protein CcmD;protein_id=WP_000074111.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	56842	57579	.	-	.	ID=gene-CFSAN001082_RS25730;Name=CFSAN001082_RS25730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25730;old_locus_tag=CFSAN001082_01605
NZ_APAH01000024.1	Protein Homology	CDS	56842	57579	.	-	0	ID=cds-WP_023253773.1;Parent=gene-CFSAN001082_RS25730;Dbxref=GenBank:WP_023253773.1;Name=WP_023253773.1;Ontology_term=GO:0017004,GO:0015232,GO:0020037,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=heme transmembrane transporter activity|0015232||IEA,heme binding|0020037||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461195.1;locus_tag=CFSAN001082_RS25730;product=heme ABC transporter permease;protein_id=WP_023253773.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	57631	58290	.	-	.	ID=gene-CFSAN001082_RS25735;Name=ccmB;gbkey=Gene;gene=ccmB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25735;old_locus_tag=CFSAN001082_01610
NZ_APAH01000024.1	Protein Homology	CDS	57631	58290	.	-	0	ID=cds-WP_000990028.1;Parent=gene-CFSAN001082_RS25735;Dbxref=GenBank:WP_000990028.1;Name=WP_000990028.1;Ontology_term=GO:0015886,GO:0015232;gbkey=CDS;gene=ccmB;go_function=heme transmembrane transporter activity|0015232||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461196.1;locus_tag=CFSAN001082_RS25735;product=heme exporter protein CcmB;protein_id=WP_000990028.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	58287	58904	.	-	.	ID=gene-CFSAN001082_RS25740;Name=ccmA;gbkey=Gene;gene=ccmA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25740;old_locus_tag=CFSAN001082_01615
NZ_APAH01000024.1	Protein Homology	CDS	58287	58904	.	-	0	ID=cds-WP_023253774.1;Parent=gene-CFSAN001082_RS25740;Dbxref=GenBank:WP_023253774.1;Name=WP_023253774.1;Ontology_term=GO:0017004,GO:0005524,GO:0022857;gbkey=CDS;gene=ccmA;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461197.1;locus_tag=CFSAN001082_RS25740;product=cytochrome c biogenesis heme-transporting ATPase CcmA;protein_id=WP_023253774.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	58910	60310	.	-	.	ID=gene-CFSAN001082_RS25745;Name=CFSAN001082_RS25745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25745;old_locus_tag=CFSAN001082_01620
NZ_APAH01000024.1	Protein Homology	CDS	58910	60310	.	-	0	ID=cds-WP_000724469.1;Parent=gene-CFSAN001082_RS25745;Dbxref=GenBank:WP_000724469.1;Name=WP_000724469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462720.1;locus_tag=CFSAN001082_RS25745;product=cytochrome-c peroxidase;protein_id=WP_000724469.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	60500	61132	.	-	.	ID=gene-CFSAN001082_RS25750;Name=torD;gbkey=Gene;gene=torD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25750;old_locus_tag=CFSAN001082_01625
NZ_APAH01000024.1	Protein Homology	CDS	60500	61132	.	-	0	ID=cds-WP_023253775.1;Parent=gene-CFSAN001082_RS25750;Dbxref=GenBank:WP_023253775.1;Name=WP_023253775.1;Ontology_term=GO:0051259;gbkey=CDS;gene=torD;go_process=protein complex oligomerization|0051259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462721.1;locus_tag=CFSAN001082_RS25750;product=molecular chaperone TorD;protein_id=WP_023253775.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	61125	63677	.	-	.	ID=gene-CFSAN001082_RS25755;Name=torA;gbkey=Gene;gene=torA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25755;old_locus_tag=CFSAN001082_01630
NZ_APAH01000024.1	Protein Homology	CDS	61125	63677	.	-	0	ID=cds-WP_023253776.1;Parent=gene-CFSAN001082_RS25755;Dbxref=GenBank:WP_023253776.1;Name=WP_023253776.1;Ontology_term=GO:0030151,GO:0043546,GO:0050626,GO:0042597;gbkey=CDS;gene=torA;go_component=periplasmic space|0042597||IEA;go_function=molybdenum ion binding|0030151||IEA,molybdopterin cofactor binding|0043546||IEA,trimethylamine-N-oxide reductase (cytochrome c) activity|0050626||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462722.1;locus_tag=CFSAN001082_RS25755;product=trimethylamine-N-oxide reductase TorA;protein_id=WP_023253776.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	63667	64851	.	-	.	ID=gene-CFSAN001082_RS25760;Name=torC;gbkey=Gene;gene=torC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25760;old_locus_tag=CFSAN001082_01635
NZ_APAH01000024.1	Protein Homology	CDS	63667	64851	.	-	0	ID=cds-WP_001230255.1;Parent=gene-CFSAN001082_RS25760;Dbxref=GenBank:WP_001230255.1;Name=WP_001230255.1;Ontology_term=GO:0009055,GO:0020037,GO:0016020;gbkey=CDS;gene=torC;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462723.1;locus_tag=CFSAN001082_RS25760;product=pentaheme c-type cytochrome TorC;protein_id=WP_001230255.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	64981	65673	.	+	.	ID=gene-CFSAN001082_RS25765;Name=torR;gbkey=Gene;gene=torR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25765;old_locus_tag=CFSAN001082_01640
NZ_APAH01000024.1	Protein Homology	CDS	64981	65673	.	+	0	ID=cds-WP_001562512.1;Parent=gene-CFSAN001082_RS25765;Dbxref=GenBank:WP_001562512.1;Name=WP_001562512.1;gbkey=CDS;gene=torR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462724.1;locus_tag=CFSAN001082_RS25765;product=two-component system response regulator TorR;protein_id=WP_001562512.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	65646	66686	.	-	.	ID=gene-CFSAN001082_RS25770;Name=torT;gbkey=Gene;gene=torT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25770;old_locus_tag=CFSAN001082_01645
NZ_APAH01000024.1	Protein Homology	CDS	65646	66686	.	-	0	ID=cds-WP_023253777.1;Parent=gene-CFSAN001082_RS25770;Dbxref=GenBank:WP_023253777.1;Name=WP_023253777.1;gbkey=CDS;gene=torT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462725.1;locus_tag=CFSAN001082_RS25770;product=TMAO reductase system periplasmic protein TorT;protein_id=WP_023253777.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	66766	69501	.	+	.	ID=gene-CFSAN001082_RS25775;Name=torS;gbkey=Gene;gene=torS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25775;old_locus_tag=CFSAN001082_01650
NZ_APAH01000024.1	Protein Homology	CDS	66766	69501	.	+	0	ID=cds-WP_023229765.1;Parent=gene-CFSAN001082_RS25775;Dbxref=GenBank:WP_023229765.1;Name=WP_023229765.1;gbkey=CDS;gene=torS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462726.1;locus_tag=CFSAN001082_RS25775;product=TMAO reductase system sensor histidine kinase/response regulator TorS;protein_id=WP_023229765.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	69606	70733	.	-	.	ID=gene-CFSAN001082_RS25780;Name=CFSAN001082_RS25780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25780;old_locus_tag=CFSAN001082_01655
NZ_APAH01000024.1	Protein Homology	CDS	69606	70733	.	-	0	ID=cds-WP_023224010.1;Parent=gene-CFSAN001082_RS25780;Dbxref=GenBank:WP_023224010.1;Name=WP_023224010.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006762570.1;locus_tag=CFSAN001082_RS25780;product=DUF4056 domain-containing protein;protein_id=WP_023224010.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	70730	71869	.	-	.	ID=gene-CFSAN001082_RS25785;Name=CFSAN001082_RS25785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25785;old_locus_tag=CFSAN001082_01660
NZ_APAH01000024.1	Protein Homology	CDS	70730	71869	.	-	0	ID=cds-WP_023253778.1;Parent=gene-CFSAN001082_RS25785;Dbxref=GenBank:WP_023253778.1;Name=WP_023253778.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001528293.1;locus_tag=CFSAN001082_RS25785;product=BamA/TamA family outer membrane protein;protein_id=WP_023253778.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	71866	72888	.	-	.	ID=gene-CFSAN001082_RS25790;Name=CFSAN001082_RS25790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25790;old_locus_tag=CFSAN001082_01665
NZ_APAH01000024.1	Protein Homology	CDS	71866	72888	.	-	0	ID=cds-WP_023253779.1;Parent=gene-CFSAN001082_RS25790;Dbxref=GenBank:WP_023253779.1;Name=WP_023253779.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001528257.1;locus_tag=CFSAN001082_RS25790;product=hypothetical protein;protein_id=WP_023253779.1;transl_table=11
NZ_APAH01000024.1	RefSeq	gene	73090	73902	.	-	.	ID=gene-CFSAN001082_RS25795;Name=yidA;gbkey=Gene;gene=yidA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25795;old_locus_tag=CFSAN001082_01670
NZ_APAH01000024.1	Protein Homology	CDS	73090	73902	.	-	0	ID=cds-WP_000985571.1;Parent=gene-CFSAN001082_RS25795;Dbxref=GenBank:WP_000985571.1;Name=WP_000985571.1;Ontology_term=GO:0016787;gbkey=CDS;gene=yidA;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418152.1;locus_tag=CFSAN001082_RS25795;product=sugar-phosphatase;protein_id=WP_000985571.1;transl_table=11
##sequence-region NZ_APAH01000025.1 1 6647
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000025.1	RefSeq	region	1	6647	.	+	.	ID=NZ_APAH01000025.1:1..6647;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000025.1	RefSeq	gene	1	76	.	-	.	ID=gene-CFSAN001082_RS25800;Name=CFSAN001082_RS25800;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS25800;old_locus_tag=CFSAN001082_t01717
NZ_APAH01000025.1	tRNAscan-SE	tRNA	1	76	.	-	.	ID=rna-CFSAN001082_RS25800;Parent=gene-CFSAN001082_RS25800;anticodon=(pos:complement(41..43));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS25800;product=tRNA-Asn
NZ_APAH01000025.1	tRNAscan-SE	exon	1	76	.	-	.	ID=exon-CFSAN001082_RS25800-1;Parent=rna-CFSAN001082_RS25800;anticodon=(pos:complement(41..43));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS25800;product=tRNA-Asn
NZ_APAH01000025.1	RefSeq	gene	217	1674	.	-	.	ID=gene-CFSAN001082_RS25805;Name=CFSAN001082_RS25805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25805;old_locus_tag=CFSAN001082_01680
NZ_APAH01000025.1	Protein Homology	CDS	217	1674	.	-	0	ID=cds-WP_001538409.1;Parent=gene-CFSAN001082_RS25805;Dbxref=GenBank:WP_001538409.1;Name=WP_001538409.1;Ontology_term=GO:0055085,GO:0015297;gbkey=CDS;go_function=antiporter activity|0015297||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460959.1;locus_tag=CFSAN001082_RS25805;product=EmmdR/YeeO family multidrug/toxin efflux MATE transporter;protein_id=WP_001538409.1;transl_table=11
NZ_APAH01000025.1	RefSeq	gene	1834	1909	.	+	.	ID=gene-CFSAN001082_RS25810;Name=CFSAN001082_RS25810;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS25810;old_locus_tag=CFSAN001082_t01719
NZ_APAH01000025.1	tRNAscan-SE	tRNA	1834	1909	.	+	.	ID=rna-CFSAN001082_RS25810;Parent=gene-CFSAN001082_RS25810;anticodon=(pos:1867..1869);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS25810;product=tRNA-Asn
NZ_APAH01000025.1	tRNAscan-SE	exon	1834	1909	.	+	.	ID=exon-CFSAN001082_RS25810-1;Parent=rna-CFSAN001082_RS25810;anticodon=(pos:1867..1869);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS25810;product=tRNA-Asn
NZ_APAH01000025.1	RefSeq	gene	2075	2377	.	+	.	ID=gene-CFSAN001082_RS25815;Name=CFSAN001082_RS25815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25815;old_locus_tag=CFSAN001082_01685
NZ_APAH01000025.1	Protein Homology	CDS	2075	2377	.	+	0	ID=cds-WP_023253781.1;Parent=gene-CFSAN001082_RS25815;Dbxref=GenBank:WP_023253781.1;Name=WP_023253781.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835997.1;locus_tag=CFSAN001082_RS25815;product=Arm DNA-binding domain-containing protein;protein_id=WP_023253781.1;transl_table=11
NZ_APAH01000025.1	RefSeq	gene	2396	3445	.	-	.	ID=gene-CFSAN001082_RS25820;Name=arsB;gbkey=Gene;gene=arsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25820;old_locus_tag=CFSAN001082_01690
NZ_APAH01000025.1	Protein Homology	CDS	2396	3445	.	-	0	ID=cds-WP_023253782.1;Parent=gene-CFSAN001082_RS25820;Dbxref=GenBank:WP_023253782.1;Name=WP_023253782.1;Ontology_term=GO:0015700,GO:0046685,GO:0008490,GO:0015103,GO:0015297,GO:0016020;gbkey=CDS;gene=arsB;go_component=membrane|0016020||IEA;go_function=arsenite secondary active transmembrane transporter activity|0008490||IEA,inorganic anion transmembrane transporter activity|0015103||IEA,antiporter activity|0015297||IEA;go_process=arsenite transport|0015700||IEA,response to arsenic-containing substance|0046685||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001276037.1;locus_tag=CFSAN001082_RS25820;product=ACR3 family arsenite efflux transporter;protein_id=WP_023253782.1;transl_table=11
NZ_APAH01000025.1	RefSeq	gene	3463	5223	.	-	.	ID=gene-CFSAN001082_RS25825;Name=arsA;gbkey=Gene;gene=arsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25825;old_locus_tag=CFSAN001082_01695
NZ_APAH01000025.1	Protein Homology	CDS	3463	5223	.	-	0	ID=cds-WP_023253783.1;Parent=gene-CFSAN001082_RS25825;Dbxref=GenBank:WP_023253783.1;Name=WP_023253783.1;Ontology_term=GO:0071722,GO:0005524,GO:0015446,GO:0016887;gbkey=CDS;gene=arsA;go_function=ATP binding|0005524||IEA,ATPase-coupled arsenite transmembrane transporter activity|0015446||IEA,ATP hydrolysis activity|0016887||IEA;go_process=detoxification of arsenic-containing substance|0071722||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006497796.1;locus_tag=CFSAN001082_RS25825;product=arsenical pump-driving ATPase;protein_id=WP_023253783.1;transl_table=11
NZ_APAH01000025.1	RefSeq	gene	5267	5629	.	-	.	ID=gene-CFSAN001082_RS25830;Name=arsD;gbkey=Gene;gene=arsD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25830;old_locus_tag=CFSAN001082_01700
NZ_APAH01000025.1	Protein Homology	CDS	5267	5629	.	-	0	ID=cds-WP_000849418.1;Parent=gene-CFSAN001082_RS25830;Dbxref=GenBank:WP_000849418.1;Name=WP_000849418.1;Ontology_term=GO:0046685,GO:0003677;gbkey=CDS;gene=arsD;go_function=DNA binding|0003677||IEA;go_process=response to arsenic-containing substance|0046685||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000849419.1;locus_tag=CFSAN001082_RS25830;product=arsenite efflux transporter metallochaperone ArsD;protein_id=WP_000849418.1;transl_table=11
NZ_APAH01000025.1	RefSeq	gene	5663	6139	.	-	.	ID=gene-CFSAN001082_RS25835;Name=CFSAN001082_RS25835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25835;old_locus_tag=CFSAN001082_01705
NZ_APAH01000025.1	Protein Homology	CDS	5663	6139	.	-	0	ID=cds-WP_001101540.1;Parent=gene-CFSAN001082_RS25835;Dbxref=GenBank:WP_001101540.1;Name=WP_001101540.1;Ontology_term=GO:0046685,GO:0004725,GO:0030612;gbkey=CDS;go_function=protein tyrosine phosphatase activity|0004725||IEA,arsenate reductase (thioredoxin) activity|0030612||IEA;go_process=response to arsenic-containing substance|0046685||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001101538.1;locus_tag=CFSAN001082_RS25835;product=arsenate reductase ArsC;protein_id=WP_001101540.1;transl_table=11
NZ_APAH01000025.1	RefSeq	gene	6136	6510	.	-	.	ID=gene-CFSAN001082_RS25840;Name=CFSAN001082_RS25840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25840;old_locus_tag=CFSAN001082_01710
NZ_APAH01000025.1	Protein Homology	CDS	6136	6510	.	-	0	ID=cds-WP_001041817.1;Parent=gene-CFSAN001082_RS25840;Dbxref=GenBank:WP_001041817.1;Name=WP_001041817.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001041816.1;locus_tag=CFSAN001082_RS25840;product=ArsR/SmtB family transcription factor;protein_id=WP_001041817.1;transl_table=11
##sequence-region NZ_APAH01000026.1 1 12307
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000026.1	RefSeq	region	1	12307	.	+	.	ID=NZ_APAH01000026.1:1..12307;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000026.1	RefSeq	gene	1	115	.	-	.	ID=gene-CFSAN001082_RS46220;Name=CFSAN001082_RS46220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46220;old_locus_tag=CFSAN001082_01719;partial=true;start_range=.,1
NZ_APAH01000026.1	Protein Homology	CDS	1	115	.	-	0	ID=cds-WP_023253784.1;Parent=gene-CFSAN001082_RS46220;Dbxref=GenBank:WP_023253784.1;Name=WP_023253784.1;Ontology_term=GO:0006950;gbkey=CDS;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460473.1;locus_tag=CFSAN001082_RS46220;partial=true;product=general stress protein;protein_id=WP_023253784.1;start_range=.,1;transl_table=11
NZ_APAH01000026.1	RefSeq	gene	460	2502	.	-	.	ID=gene-CFSAN001082_RS25845;Name=dcp;gbkey=Gene;gene=dcp;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25845;old_locus_tag=CFSAN001082_01724
NZ_APAH01000026.1	Protein Homology	CDS	460	2502	.	-	0	ID=cds-WP_023253785.1;Parent=gene-CFSAN001082_RS25845;Dbxref=GenBank:WP_023253785.1;Name=WP_023253785.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=dcp;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460472.1;locus_tag=CFSAN001082_RS25845;product=peptidyl-dipeptidase Dcp;protein_id=WP_023253785.1;transl_table=11
NZ_APAH01000026.1	RefSeq	gene	2641	3387	.	+	.	ID=gene-CFSAN001082_RS25850;Name=ydfG;gbkey=Gene;gene=ydfG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25850;old_locus_tag=CFSAN001082_01729
NZ_APAH01000026.1	Protein Homology	CDS	2641	3387	.	+	0	ID=cds-WP_000636564.1;Parent=gene-CFSAN001082_RS25850;Dbxref=GenBank:WP_000636564.1;Name=WP_000636564.1;Ontology_term=GO:0016491;gbkey=CDS;gene=ydfG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460471.1;locus_tag=CFSAN001082_RS25850;product=bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG;protein_id=WP_000636564.1;transl_table=11
NZ_APAH01000026.1	RefSeq	gene	3517	4203	.	+	.	ID=gene-CFSAN001082_RS25855;Name=CFSAN001082_RS25855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25855;old_locus_tag=CFSAN001082_01734
NZ_APAH01000026.1	Protein Homology	CDS	3517	4203	.	+	0	ID=cds-WP_000215563.1;Parent=gene-CFSAN001082_RS25855;Dbxref=GenBank:WP_000215563.1;Name=WP_000215563.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460470.1;locus_tag=CFSAN001082_RS25855;product=GntR family transcriptional regulator;protein_id=WP_000215563.1;transl_table=11
NZ_APAH01000026.1	RefSeq	gene	4384	4587	.	+	.	ID=gene-CFSAN001082_RS25860;Name=ydfZ;gbkey=Gene;gene=ydfZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25860;old_locus_tag=CFSAN001082_01739
NZ_APAH01000026.1	Protein Homology	CDS	4384	4587	.	+	0	ID=cds-WP_000989267.1;Parent=gene-CFSAN001082_RS25860;Dbxref=GenBank:WP_000989267.1;Name=WP_000989267.1;gbkey=CDS;gene=ydfZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460469.1;locus_tag=CFSAN001082_RS25860;product=putative selenium delivery protein YdfZ;protein_id=WP_000989267.1;transl_table=11
NZ_APAH01000026.1	RefSeq	gene	4654	6120	.	-	.	ID=gene-CFSAN001082_RS25865;Name=CFSAN001082_RS25865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25865;old_locus_tag=CFSAN001082_01744
NZ_APAH01000026.1	Protein Homology	CDS	4654	6120	.	-	0	ID=cds-WP_023253786.1;Parent=gene-CFSAN001082_RS25865;Dbxref=GenBank:WP_023253786.1;Name=WP_023253786.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460468.1;locus_tag=CFSAN001082_RS25865;product=mannitol dehydrogenase family protein;protein_id=WP_023253786.1;transl_table=11
NZ_APAH01000026.1	RefSeq	gene	6264	7643	.	-	.	ID=gene-CFSAN001082_RS25870;Name=CFSAN001082_RS25870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25870;old_locus_tag=CFSAN001082_01749
NZ_APAH01000026.1	Protein Homology	CDS	6264	7643	.	-	0	ID=cds-WP_000192118.1;Parent=gene-CFSAN001082_RS25870;Dbxref=GenBank:WP_000192118.1;Name=WP_000192118.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012210164.1;locus_tag=CFSAN001082_RS25870;product=MFS transporter;protein_id=WP_000192118.1;transl_table=11
NZ_APAH01000026.1	RefSeq	gene	7697	8716	.	-	.	ID=gene-CFSAN001082_RS25875;Name=CFSAN001082_RS25875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25875;old_locus_tag=CFSAN001082_01754
NZ_APAH01000026.1	Protein Homology	CDS	7697	8716	.	-	0	ID=cds-WP_023253787.1;Parent=gene-CFSAN001082_RS25875;Dbxref=GenBank:WP_023253787.1;Name=WP_023253787.1;Ontology_term=GO:0008270,GO:0016491;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460466.1;locus_tag=CFSAN001082_RS25875;product=Zn-dependent oxidoreductase;protein_id=WP_023253787.1;transl_table=11
NZ_APAH01000026.1	RefSeq	gene	8727	9941	.	-	.	ID=gene-CFSAN001082_RS25880;Name=rspA;gbkey=Gene;gene=rspA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25880;old_locus_tag=CFSAN001082_01759
NZ_APAH01000026.1	Protein Homology	CDS	8727	9941	.	-	0	ID=cds-WP_000706268.1;Parent=gene-CFSAN001082_RS25880;Dbxref=GenBank:WP_000706268.1;Name=WP_000706268.1;gbkey=CDS;gene=rspA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001625315.1;locus_tag=CFSAN001082_RS25880;product=starvation-sensing protein RspA;protein_id=WP_000706268.1;transl_table=11
NZ_APAH01000026.1	RefSeq	gene	10063	10389	.	-	.	ID=gene-CFSAN001082_RS25885;Name=CFSAN001082_RS25885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25885;old_locus_tag=CFSAN001082_01764
NZ_APAH01000026.1	Protein Homology	CDS	10063	10389	.	-	0	ID=cds-WP_000921382.1;Parent=gene-CFSAN001082_RS25885;Dbxref=GenBank:WP_000921382.1;Name=WP_000921382.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460464.1;locus_tag=CFSAN001082_RS25885;product=YnfA family protein;protein_id=WP_000921382.1;transl_table=11
NZ_APAH01000026.1	RefSeq	gene	10542	10883	.	+	.	ID=gene-CFSAN001082_RS25890;Name=CFSAN001082_RS25890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25890;old_locus_tag=CFSAN001082_01769
NZ_APAH01000026.1	Protein Homology	CDS	10542	10883	.	+	0	ID=cds-WP_001066440.1;Parent=gene-CFSAN001082_RS25890;Dbxref=GenBank:WP_001066440.1;Name=WP_001066440.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460463.1;locus_tag=CFSAN001082_RS25890;product=DUF1283 family protein;protein_id=WP_001066440.1;transl_table=11
NZ_APAH01000026.1	RefSeq	gene	10919	11479	.	+	.	ID=gene-CFSAN001082_RS25895;Name=speG;gbkey=Gene;gene=speG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25895;old_locus_tag=CFSAN001082_01774
NZ_APAH01000026.1	Protein Homology	CDS	10919	11479	.	+	0	ID=cds-WP_000199997.1;Parent=gene-CFSAN001082_RS25895;Dbxref=GenBank:WP_000199997.1;Name=WP_000199997.1;Ontology_term=GO:0008080;gbkey=CDS;gene=speG;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460462.1;locus_tag=CFSAN001082_RS25895;product=spermidine N1-acetyltransferase;protein_id=WP_000199997.1;transl_table=11
NZ_APAH01000026.1	RefSeq	gene	11520	12230	.	-	.	ID=gene-CFSAN001082_RS25900;Name=CFSAN001082_RS25900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25900;old_locus_tag=CFSAN001082_01779
NZ_APAH01000026.1	Protein Homology	CDS	11520	12230	.	-	0	ID=cds-WP_000743122.1;Parent=gene-CFSAN001082_RS25900;Dbxref=GenBank:WP_000743122.1;Name=WP_000743122.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465701.1;locus_tag=CFSAN001082_RS25900;product=YnfC family lipoprotein;protein_id=WP_000743122.1;transl_table=11
##sequence-region NZ_APAH01000027.1 1 5376
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000027.1	RefSeq	region	1	5376	.	+	.	ID=NZ_APAH01000027.1:1..5376;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000027.1	RefSeq	gene	60	782	.	-	.	ID=gene-CFSAN001082_RS25905;Name=fimY;gbkey=Gene;gene=fimY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25905;old_locus_tag=CFSAN001082_01784
NZ_APAH01000027.1	Protein Homology	CDS	60	782	.	-	0	ID=cds-WP_023253788.1;Parent=gene-CFSAN001082_RS25905;Dbxref=GenBank:WP_023253788.1;Name=WP_023253788.1;gbkey=CDS;gene=fimY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459545.1;locus_tag=CFSAN001082_RS25905;product=fimbria biosynthesis regulator FimY;protein_id=WP_023253788.1;transl_table=11
NZ_APAH01000027.1	RefSeq	gene	801	1112	.	-	.	ID=gene-CFSAN001082_RS25910;Name=CFSAN001082_RS25910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25910;old_locus_tag=CFSAN001082_01789
NZ_APAH01000027.1	Protein Homology	CDS	801	1112	.	-	0	ID=cds-WP_023253789.1;Parent=gene-CFSAN001082_RS25910;Dbxref=GenBank:WP_023253789.1;Name=WP_023253789.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459546.1;locus_tag=CFSAN001082_RS25910;product=hypothetical protein;protein_id=WP_023253789.1;transl_table=11
NZ_APAH01000027.1	RefSeq	gene	1274	1870	.	-	.	ID=gene-CFSAN001082_RS25915;Name=fimW;gbkey=Gene;gene=fimW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25915;old_locus_tag=CFSAN001082_01794
NZ_APAH01000027.1	Protein Homology	CDS	1274	1870	.	-	0	ID=cds-WP_001523348.1;Parent=gene-CFSAN001082_RS25915;Dbxref=GenBank:WP_001523348.1;Name=WP_001523348.1;gbkey=CDS;gene=fimW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459547.1;locus_tag=CFSAN001082_RS25915;product=fimbria biosynthesis transcriptional regulator FimW;protein_id=WP_001523348.1;transl_table=11
NZ_APAH01000027.1	RefSeq	gene	2125	2201	.	+	.	ID=gene-CFSAN001082_RS25920;Name=CFSAN001082_RS25920;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS25920;old_locus_tag=CFSAN001082_t01831
NZ_APAH01000027.1	tRNAscan-SE	tRNA	2125	2201	.	+	.	ID=rna-CFSAN001082_RS25920;Parent=gene-CFSAN001082_RS25920;anticodon=(pos:2159..2161);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS25920;product=tRNA-Arg
NZ_APAH01000027.1	tRNAscan-SE	exon	2125	2201	.	+	.	ID=exon-CFSAN001082_RS25920-1;Parent=rna-CFSAN001082_RS25920;anticodon=(pos:2159..2161);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS25920;product=tRNA-Arg
NZ_APAH01000027.1	RefSeq	pseudogene	2160	3379	.	-	.	ID=gene-CFSAN001082_RS25925;Name=CFSAN001082_RS25925;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS25925;pseudo=true
NZ_APAH01000027.1	Protein Homology	CDS	2160	3379	.	-	0	ID=cds-CFSAN001082_RS25925;Parent=gene-CFSAN001082_RS25925;Note=frameshifted%3B internal stop;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012125681.1;locus_tag=CFSAN001082_RS25925;product=site-specific integrase;pseudo=true;transl_table=11
NZ_APAH01000027.1	RefSeq	pseudogene	3511	3606	.	-	.	ID=gene-CFSAN001082_RS48675;Name=CFSAN001082_RS48675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48675;partial=true;pseudo=true;start_range=.,3511
NZ_APAH01000027.1	Protein Homology	CDS	3511	3606	.	-	0	ID=cds-CFSAN001082_RS48675;Parent=gene-CFSAN001082_RS48675;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: protein motif:HMM:NF024139.6;locus_tag=CFSAN001082_RS48675;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;start_range=.,3511;transl_table=11
NZ_APAH01000027.1	RefSeq	pseudogene	3670	4878	.	-	.	ID=gene-CFSAN001082_RS0122845;Name=CFSAN001082_RS0122845;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0122845;pseudo=true
NZ_APAH01000027.1	Protein Homology	CDS	3670	4878	.	-	0	ID=cds-CFSAN001082_RS0122845;Parent=gene-CFSAN001082_RS0122845;Note=internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343613.1;locus_tag=CFSAN001082_RS0122845;product=IS256 family transposase;pseudo=true;transl_table=11
NZ_APAH01000027.1	RefSeq	gene	4980	5376	.	-	.	ID=gene-CFSAN001082_RS48680;Name=CFSAN001082_RS48680;end_range=5376,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48680;old_locus_tag=CFSAN001082_01824;partial=true
NZ_APAH01000027.1	GeneMarkS-2+	CDS	4980	5376	.	-	1	ID=cds-WP_023253790.1;Parent=gene-CFSAN001082_RS48680;Dbxref=GenBank:WP_023253790.1;Name=WP_023253790.1;end_range=5376,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48680;partial=true;product=hypothetical protein;protein_id=WP_023253790.1;transl_table=11
##sequence-region NZ_APAH01000028.1 1 235
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000028.1	RefSeq	region	1	235	.	+	.	ID=NZ_APAH01000028.1:1..235;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000028.1	RefSeq	gene	1	92	.	-	.	ID=gene-CFSAN001082_RS48120;Name=CFSAN001082_RS48120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48120;partial=true;start_range=.,1
NZ_APAH01000028.1	Protein Homology	CDS	1	92	.	-	0	ID=cds-WP_306823565.1;Parent=gene-CFSAN001082_RS48120;Dbxref=GenBank:WP_306823565.1;Name=WP_306823565.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459047.1;locus_tag=CFSAN001082_RS48120;partial=true;product=hypothetical protein;protein_id=WP_306823565.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000029.1 1 362
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000029.1	RefSeq	region	1	362	.	+	.	ID=NZ_APAH01000029.1:1..362;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000029.1	RefSeq	gene	1	362	.	+	.	ID=gene-CFSAN001082_RS48505;Name=CFSAN001082_RS48505;end_range=362,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48505;old_locus_tag=CFSAN001082_01831;partial=true;start_range=.,1
NZ_APAH01000029.1	GeneMarkS-2+	CDS	1	362	.	+	2	ID=cds-WP_023253791.1;Parent=gene-CFSAN001082_RS48505;Dbxref=GenBank:WP_023253791.1;Name=WP_023253791.1;end_range=362,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48505;partial=true;product=hypothetical protein;protein_id=WP_023253791.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000030.1 1 1727
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000030.1	RefSeq	region	1	1727	.	+	.	ID=NZ_APAH01000030.1:1..1727;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000030.1	RefSeq	pseudogene	1	66	.	+	.	ID=gene-CFSAN001082_RS48125;Name=CFSAN001082_RS48125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48125;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000030.1	Protein Homology	CDS	1	66	.	+	0	ID=cds-CFSAN001082_RS48125;Parent=gene-CFSAN001082_RS48125;Note=Salmonella pathogenicity island 2 protein%3B member of a type III secretion system involved in the survival and replication of Salmonella in a host cell%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460381.1;locus_tag=CFSAN001082_RS48125;partial=true;product=SPI-2 type III secretion system apparatus protein SsaO;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000030.1	RefSeq	gene	47	421	.	+	.	ID=gene-CFSAN001082_RS25935;Name=ssaP;gbkey=Gene;gene=ssaP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25935;old_locus_tag=CFSAN001082_01836
NZ_APAH01000030.1	Protein Homology	CDS	47	421	.	+	0	ID=cds-WP_001223304.1;Parent=gene-CFSAN001082_RS25935;Dbxref=GenBank:WP_001223304.1;Name=WP_001223304.1;gbkey=CDS;gene=ssaP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460382.1;locus_tag=CFSAN001082_RS25935;product=SPI-2 type III secretion system apparatus protein SsaP;protein_id=WP_001223304.1;transl_table=11
NZ_APAH01000030.1	RefSeq	gene	402	1370	.	+	.	ID=gene-CFSAN001082_RS25940;Name=ssaQ;gbkey=Gene;gene=ssaQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25940;old_locus_tag=CFSAN001082_01841
NZ_APAH01000030.1	Protein Homology	CDS	402	1370	.	+	0	ID=cds-WP_023253792.1;Parent=gene-CFSAN001082_RS25940;Dbxref=GenBank:WP_023253792.1;Name=WP_023253792.1;gbkey=CDS;gene=ssaQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460383.1;locus_tag=CFSAN001082_RS25940;product=SPI-2 type III secretion system cytoplasmic ring protein SsaQ;protein_id=WP_023253792.1;transl_table=11
NZ_APAH01000030.1	RefSeq	pseudogene	1438	1727	.	+	.	ID=gene-CFSAN001082_RS25945;Name=ssaR;end_range=1727,.;gbkey=Gene;gene=ssaR;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS25945;old_locus_tag=CFSAN001082_01846;partial=true;pseudo=true
NZ_APAH01000030.1	Protein Homology	CDS	1438	1727	.	+	0	ID=cds-CFSAN001082_RS25945;Parent=gene-CFSAN001082_RS25945;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=1727,.;gbkey=CDS;gene=ssaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460384.1;locus_tag=CFSAN001082_RS25945;partial=true;product=SPI-2 type III secretion system export apparatus protein SsaR;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000031.1 1 51898
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000031.1	RefSeq	region	1	51898	.	+	.	ID=NZ_APAH01000031.1:1..51898;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000031.1	RefSeq	gene	49	1020	.	+	.	ID=gene-CFSAN001082_RS25950;Name=CFSAN001082_RS25950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25950;old_locus_tag=CFSAN001082_01851
NZ_APAH01000031.1	Protein Homology	CDS	49	1020	.	+	0	ID=cds-WP_024150237.1;Parent=gene-CFSAN001082_RS25950;Dbxref=GenBank:WP_024150237.1;Name=WP_024150237.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000220794.1;locus_tag=CFSAN001082_RS25950;product=DUF4424 family protein;protein_id=WP_024150237.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	1052	3649	.	-	.	ID=gene-CFSAN001082_RS25955;Name=acnB;gbkey=Gene;gene=acnB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25955;old_locus_tag=CFSAN001082_01856
NZ_APAH01000031.1	Protein Homology	CDS	1052	3649	.	-	0	ID=cds-WP_023253795.1;Parent=gene-CFSAN001082_RS25955;Dbxref=GenBank:WP_023253795.1;Name=WP_023253795.1;Ontology_term=GO:0006099,GO:0003994,GO:0051539,GO:0005829;gbkey=CDS;gene=acnB;go_component=cytosol|0005829||IEA;go_function=aconitate hydratase activity|0003994||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019080489.1;locus_tag=CFSAN001082_RS25955;product=bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase;protein_id=WP_023253795.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	4038	5663	.	+	.	ID=gene-CFSAN001082_RS25960;Name=CFSAN001082_RS25960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25960;old_locus_tag=CFSAN001082_01861
NZ_APAH01000031.1	Protein Homology	CDS	4038	5663	.	+	0	ID=cds-WP_023253796.1;Parent=gene-CFSAN001082_RS25960;Dbxref=GenBank:WP_023253796.1;Name=WP_023253796.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459162.2;locus_tag=CFSAN001082_RS25960;product=DUF3300 domain-containing protein;protein_id=WP_023253796.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	5676	6467	.	+	.	ID=gene-CFSAN001082_RS25965;Name=CFSAN001082_RS25965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25965;old_locus_tag=CFSAN001082_01866
NZ_APAH01000031.1	Protein Homology	CDS	5676	6467	.	+	0	ID=cds-WP_023253797.1;Parent=gene-CFSAN001082_RS25965;Dbxref=GenBank:WP_023253797.1;Name=WP_023253797.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459161.1;locus_tag=CFSAN001082_RS25965;product=DUF2950 family protein;protein_id=WP_023253797.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	6505	6789	.	-	.	ID=gene-CFSAN001082_RS25970;Name=CFSAN001082_RS25970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25970;old_locus_tag=CFSAN001082_01871
NZ_APAH01000031.1	Protein Homology	CDS	6505	6789	.	-	0	ID=cds-WP_000765363.1;Parent=gene-CFSAN001082_RS25970;Dbxref=GenBank:WP_000765363.1;Name=WP_000765363.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459160.1;locus_tag=CFSAN001082_RS25970;product=outer membrane protein;protein_id=WP_000765363.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	7078	8502	.	-	.	ID=gene-CFSAN001082_RS25975;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25975;old_locus_tag=CFSAN001082_01876
NZ_APAH01000031.1	Protein Homology	CDS	7078	8502	.	-	0	ID=cds-WP_001519338.1;Parent=gene-CFSAN001082_RS25975;Dbxref=GenBank:WP_001519338.1;Name=WP_001519338.1;Ontology_term=GO:0004148,GO:0050660;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase (NADH) activity|0004148||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001738005.1;locus_tag=CFSAN001082_RS25975;product=dihydrolipoyl dehydrogenase;protein_id=WP_001519338.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	8704	10593	.	-	.	ID=gene-CFSAN001082_RS25980;Name=aceF;gbkey=Gene;gene=aceF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25980;old_locus_tag=CFSAN001082_01881
NZ_APAH01000031.1	Protein Homology	CDS	8704	10593	.	-	0	ID=cds-WP_000963594.1;Parent=gene-CFSAN001082_RS25980;Dbxref=GenBank:WP_000963594.1;Name=WP_000963594.1;Ontology_term=GO:0006096,GO:0004742,GO:0045254;gbkey=CDS;gene=aceF;go_component=pyruvate dehydrogenase complex|0045254||IEA;go_function=dihydrolipoyllysine-residue acetyltransferase activity|0004742||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459158.2;locus_tag=CFSAN001082_RS25980;product=pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase;protein_id=WP_000963594.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	10608	13271	.	-	.	ID=gene-CFSAN001082_RS25985;Name=aceE;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25985;old_locus_tag=CFSAN001082_01886
NZ_APAH01000031.1	Protein Homology	CDS	10608	13271	.	-	0	ID=cds-WP_000003852.1;Parent=gene-CFSAN001082_RS25985;Dbxref=GenBank:WP_000003852.1;Name=WP_000003852.1;Ontology_term=GO:0006086,GO:0004738,GO:0045254;gbkey=CDS;gene=aceE;go_component=pyruvate dehydrogenase complex|0045254||IEA;go_function=pyruvate dehydrogenase activity|0004738||IEA;go_process=pyruvate decarboxylation to acetyl-CoA|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008814576.1;locus_tag=CFSAN001082_RS25985;product=pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type;protein_id=WP_000003852.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	13578	14342	.	-	.	ID=gene-CFSAN001082_RS25990;Name=pdhR;gbkey=Gene;gene=pdhR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25990;old_locus_tag=CFSAN001082_01896
NZ_APAH01000031.1	Protein Homology	CDS	13578	14342	.	-	0	ID=cds-WP_000331771.1;Parent=gene-CFSAN001082_RS25990;Dbxref=GenBank:WP_000331771.1;Name=WP_000331771.1;gbkey=CDS;gene=pdhR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459156.1;locus_tag=CFSAN001082_RS25990;product=pyruvate dehydrogenase complex transcriptional repressor PdhR;protein_id=WP_000331771.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	14905	16278	.	+	.	ID=gene-CFSAN001082_RS25995;Name=aroP;gbkey=Gene;gene=aroP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS25995;old_locus_tag=CFSAN001082_01901
NZ_APAH01000031.1	Protein Homology	CDS	14905	16278	.	+	0	ID=cds-WP_000969487.1;Parent=gene-CFSAN001082_RS25995;Dbxref=GenBank:WP_000969487.1;Name=WP_000969487.1;Ontology_term=GO:0006865;gbkey=CDS;gene=aroP;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459155.1;locus_tag=CFSAN001082_RS25995;product=aromatic amino acid transporter AroP;protein_id=WP_000969487.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	16442	17848	.	+	.	ID=gene-CFSAN001082_RS26000;Name=CFSAN001082_RS26000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26000;old_locus_tag=CFSAN001082_01906
NZ_APAH01000031.1	Protein Homology	CDS	16442	17848	.	+	0	ID=cds-WP_023200594.1;Parent=gene-CFSAN001082_RS26000;Dbxref=GenBank:WP_023200594.1;Name=WP_023200594.1;Ontology_term=GO:0006812,GO:0008643,GO:0015486,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=glycoside-pentoside-hexuronide:cation symporter activity|0015486||IEA;go_process=monoatomic cation transport|0006812||IEA,carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459154.1;locus_tag=CFSAN001082_RS26000;product=glycoside-pentoside-hexuronide (GPH):cation symporter;protein_id=WP_023200594.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	17848	18798	.	+	.	ID=gene-CFSAN001082_RS26005;Name=CFSAN001082_RS26005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26005;old_locus_tag=CFSAN001082_01911
NZ_APAH01000031.1	Protein Homology	CDS	17848	18798	.	+	0	ID=cds-WP_023253798.1;Parent=gene-CFSAN001082_RS26005;Dbxref=GenBank:WP_023253798.1;Name=WP_023253798.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459153.1;locus_tag=CFSAN001082_RS26005;product=glycoside hydrolase family 43 protein;protein_id=WP_023253798.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	18890	19744	.	-	.	ID=gene-CFSAN001082_RS26010;Name=ampE;gbkey=Gene;gene=ampE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26010;old_locus_tag=CFSAN001082_01916
NZ_APAH01000031.1	Protein Homology	CDS	18890	19744	.	-	0	ID=cds-WP_001647699.1;Parent=gene-CFSAN001082_RS26010;Dbxref=GenBank:WP_001647699.1;Name=WP_001647699.1;gbkey=CDS;gene=ampE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459152.1;locus_tag=CFSAN001082_RS26010;product=beta-lactamase regulator AmpE;protein_id=WP_001647699.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	19741	20304	.	-	.	ID=gene-CFSAN001082_RS26015;Name=ampD;gbkey=Gene;gene=ampD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26015;old_locus_tag=CFSAN001082_01921
NZ_APAH01000031.1	Protein Homology	CDS	19741	20304	.	-	0	ID=cds-WP_000936326.1;Parent=gene-CFSAN001082_RS26015;Dbxref=GenBank:WP_000936326.1;Name=WP_000936326.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;gene=ampD;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459151.1;locus_tag=CFSAN001082_RS26015;product=1%2C6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD;protein_id=WP_000936326.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	20392	21285	.	+	.	ID=gene-CFSAN001082_RS26020;Name=nadC;gbkey=Gene;gene=nadC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26020;old_locus_tag=CFSAN001082_01926
NZ_APAH01000031.1	Protein Homology	CDS	20392	21285	.	+	0	ID=cds-WP_001135135.1;Parent=gene-CFSAN001082_RS26020;Dbxref=GenBank:WP_001135135.1;Name=WP_001135135.1;Ontology_term=GO:0009435,GO:0004514;gbkey=CDS;gene=nadC;go_function=nicotinate-nucleotide diphosphorylase (carboxylating) activity|0004514||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459150.1;locus_tag=CFSAN001082_RS26020;product=carboxylating nicotinate-nucleotide diphosphorylase;protein_id=WP_001135135.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	21507	21944	.	+	.	ID=gene-CFSAN001082_RS26025;Name=ppdD;gbkey=Gene;gene=ppdD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26025;old_locus_tag=CFSAN001082_01931
NZ_APAH01000031.1	Protein Homology	CDS	21507	21944	.	+	0	ID=cds-WP_000414989.1;Parent=gene-CFSAN001082_RS26025;Dbxref=GenBank:WP_000414989.1;Name=WP_000414989.1;gbkey=CDS;gene=ppdD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459149.1;locus_tag=CFSAN001082_RS26025;product=prepilin peptidase-dependent pilin;protein_id=WP_000414989.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	21954	23339	.	+	.	ID=gene-CFSAN001082_RS26030;Name=gspE;gbkey=Gene;gene=gspE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26030;old_locus_tag=CFSAN001082_01936
NZ_APAH01000031.1	Protein Homology	CDS	21954	23339	.	+	0	ID=cds-WP_023253799.1;Parent=gene-CFSAN001082_RS26030;Dbxref=GenBank:WP_023253799.1;Name=WP_023253799.1;gbkey=CDS;gene=gspE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459148.1;locus_tag=CFSAN001082_RS26030;product=type II secretion system protein GspE;protein_id=WP_023253799.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	23329	24531	.	+	.	ID=gene-CFSAN001082_RS26035;Name=hofC;gbkey=Gene;gene=hofC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26035;old_locus_tag=CFSAN001082_01941
NZ_APAH01000031.1	Protein Homology	CDS	23329	24531	.	+	0	ID=cds-WP_023253800.1;Parent=gene-CFSAN001082_RS26035;Dbxref=GenBank:WP_023253800.1;Name=WP_023253800.1;Ontology_term=GO:0004827;gbkey=CDS;gene=hofC;go_function=proline-tRNA ligase activity|0004827||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459147.1;locus_tag=CFSAN001082_RS26035;product=protein transport protein HofC;protein_id=WP_023253800.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	24562	25605	.	-	.	ID=gene-CFSAN001082_RS26040;Name=CFSAN001082_RS26040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26040;old_locus_tag=CFSAN001082_01946
NZ_APAH01000031.1	Protein Homology	CDS	24562	25605	.	-	0	ID=cds-WP_001217365.1;Parent=gene-CFSAN001082_RS26040;Dbxref=GenBank:WP_001217365.1;Name=WP_001217365.1;Ontology_term=GO:0009117,GO:0003920;gbkey=CDS;go_function=GMP reductase activity|0003920||IEA;go_process=nucleotide metabolic process|0009117||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008461816.1;locus_tag=CFSAN001082_RS26040;product=GMP reductase;protein_id=WP_001217365.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	25831	26451	.	+	.	ID=gene-CFSAN001082_RS26045;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26045;old_locus_tag=CFSAN001082_01951
NZ_APAH01000031.1	Protein Homology	CDS	25831	26451	.	+	0	ID=cds-WP_001270913.1;Parent=gene-CFSAN001082_RS26045;Dbxref=GenBank:WP_001270913.1;Name=WP_001270913.1;Note=Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis.;Ontology_term=GO:0015937,GO:0004140,GO:0005524,GO:0005737;gbkey=CDS;gene=coaE;go_component=cytoplasm|0005737||IEA;go_function=dephospho-CoA kinase activity|0004140||IEA,ATP binding|0005524||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459145.1;locus_tag=CFSAN001082_RS26045;product=dephospho-CoA kinase;protein_id=WP_001270913.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	26451	27194	.	+	.	ID=gene-CFSAN001082_RS26050;Name=zapD;gbkey=Gene;gene=zapD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26050;old_locus_tag=CFSAN001082_01956
NZ_APAH01000031.1	Protein Homology	CDS	26451	27194	.	+	0	ID=cds-WP_000557443.1;Parent=gene-CFSAN001082_RS26050;Dbxref=GenBank:WP_000557443.1;Name=WP_000557443.1;gbkey=CDS;gene=zapD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459144.1;locus_tag=CFSAN001082_RS26050;product=cell division protein ZapD;protein_id=WP_000557443.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	27204	27395	.	+	.	ID=gene-CFSAN001082_RS26055;Name=yacG;gbkey=Gene;gene=yacG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26055;old_locus_tag=CFSAN001082_01961
NZ_APAH01000031.1	Protein Homology	CDS	27204	27395	.	+	0	ID=cds-WP_001286419.1;Parent=gene-CFSAN001082_RS26055;Dbxref=GenBank:WP_001286419.1;Name=WP_001286419.1;Ontology_term=GO:0006355,GO:0008270;gbkey=CDS;gene=yacG;go_function=zinc ion binding|0008270||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459143.1;locus_tag=CFSAN001082_RS26055;product=DNA gyrase inhibitor YacG;protein_id=WP_001286419.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	27392	28333	.	-	.	ID=gene-CFSAN001082_RS26060;Name=CFSAN001082_RS26060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26060;old_locus_tag=CFSAN001082_01966
NZ_APAH01000031.1	Protein Homology	CDS	27392	28333	.	-	0	ID=cds-WP_001538994.1;Parent=gene-CFSAN001082_RS26060;Dbxref=GenBank:WP_001538994.1;Name=WP_001538994.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001697068.1;locus_tag=CFSAN001082_RS26060;product=LysR family transcriptional regulator;protein_id=WP_001538994.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	28419	29408	.	+	.	ID=gene-CFSAN001082_RS26065;Name=CFSAN001082_RS26065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26065;old_locus_tag=CFSAN001082_01971
NZ_APAH01000031.1	Protein Homology	CDS	28419	29408	.	+	0	ID=cds-WP_023253801.1;Parent=gene-CFSAN001082_RS26065;Dbxref=GenBank:WP_023253801.1;Name=WP_023253801.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001200034.1;locus_tag=CFSAN001082_RS26065;product=aldo/keto reductase;protein_id=WP_023253801.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	29442	29837	.	-	.	ID=gene-CFSAN001082_RS26070;Name=mutT;gbkey=Gene;gene=mutT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26070;old_locus_tag=CFSAN001082_01976
NZ_APAH01000031.1	Protein Homology	CDS	29442	29837	.	-	0	ID=cds-WP_000736063.1;Parent=gene-CFSAN001082_RS26070;Dbxref=GenBank:WP_000736063.1;Name=WP_000736063.1;Ontology_term=GO:0006281,GO:0008413;gbkey=CDS;gene=mutT;go_function=8-oxo-7%2C8-dihydroguanosine triphosphate pyrophosphatase activity|0008413||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000736055.1;locus_tag=CFSAN001082_RS26070;product=8-oxo-dGTP diphosphatase MutT;protein_id=WP_000736063.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	29993	32698	.	-	.	ID=gene-CFSAN001082_RS26075;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26075;old_locus_tag=CFSAN001082_01981
NZ_APAH01000031.1	Protein Homology	CDS	29993	32698	.	-	0	ID=cds-WP_000905757.1;Parent=gene-CFSAN001082_RS26075;Dbxref=GenBank:WP_000905757.1;Name=WP_000905757.1;Ontology_term=GO:0006605,GO:0006886,GO:0017038,GO:0005524;gbkey=CDS;gene=secA;go_function=ATP binding|0005524||IEA;go_process=protein targeting|0006605||IEA,intracellular protein transport|0006886||IEA,protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459141.1;locus_tag=CFSAN001082_RS26075;product=preprotein translocase subunit SecA;protein_id=WP_000905757.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	32760	33257	.	-	.	ID=gene-CFSAN001082_RS26080;Name=secM;gbkey=Gene;gene=secM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26080;old_locus_tag=CFSAN001082_01986
NZ_APAH01000031.1	Protein Homology	CDS	32760	33257	.	-	0	ID=cds-WP_000014336.1;Parent=gene-CFSAN001082_RS26080;Dbxref=GenBank:WP_000014336.1;Name=WP_000014336.1;Ontology_term=GO:0045182;gbkey=CDS;gene=secM;go_function=translation regulator activity|0045182||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308128.2;locus_tag=CFSAN001082_RS26080;product=secA translation cis-regulator SecM;protein_id=WP_000014336.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	33535	34452	.	-	.	ID=gene-CFSAN001082_RS26085;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26085;old_locus_tag=CFSAN001082_01991
NZ_APAH01000031.1	Protein Homology	CDS	33535	34452	.	-	0	ID=cds-WP_000595487.1;Parent=gene-CFSAN001082_RS26085;Dbxref=GenBank:WP_000595487.1;Name=WP_000595487.1;Ontology_term=GO:0009245,GO:0103117;gbkey=CDS;gene=lpxC;go_function=UDP-3-O-acyl-N-acetylglucosamine deacetylase activity|0103117||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459139.1;locus_tag=CFSAN001082_RS26085;product=UDP-3-O-acyl-N-acetylglucosamine deacetylase;protein_id=WP_000595487.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	34553	35704	.	-	.	ID=gene-CFSAN001082_RS26090;Name=ftsZ;gbkey=Gene;gene=ftsZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26090;old_locus_tag=CFSAN001082_01996
NZ_APAH01000031.1	Protein Homology	CDS	34553	35704	.	-	0	ID=cds-WP_000462785.1;Parent=gene-CFSAN001082_RS26090;Dbxref=GenBank:WP_000462785.1;Name=WP_000462785.1;Ontology_term=GO:0000910,GO:0003924,GO:0005525;gbkey=CDS;gene=ftsZ;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965916.1;locus_tag=CFSAN001082_RS26090;product=cell division protein FtsZ;protein_id=WP_000462785.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	35765	37027	.	-	.	ID=gene-CFSAN001082_RS26095;Name=ftsA;gbkey=Gene;gene=ftsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26095;old_locus_tag=CFSAN001082_02001
NZ_APAH01000031.1	Protein Homology	CDS	35765	37027	.	-	0	ID=cds-WP_000588463.1;Parent=gene-CFSAN001082_RS26095;Dbxref=GenBank:WP_000588463.1;Name=WP_000588463.1;Ontology_term=GO:0051301,GO:0005515;gbkey=CDS;gene=ftsA;go_function=protein binding|0005515||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459137.1;locus_tag=CFSAN001082_RS26095;product=cell division protein FtsA;protein_id=WP_000588463.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	37024	37854	.	-	.	ID=gene-CFSAN001082_RS26100;Name=ftsQ;gbkey=Gene;gene=ftsQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26100;old_locus_tag=CFSAN001082_02006
NZ_APAH01000031.1	Protein Homology	CDS	37024	37854	.	-	0	ID=cds-WP_000075728.1;Parent=gene-CFSAN001082_RS26100;Dbxref=GenBank:WP_000075728.1;Name=WP_000075728.1;Ontology_term=GO:0090529;gbkey=CDS;gene=ftsQ;go_process=cell septum assembly|0090529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459136.1;locus_tag=CFSAN001082_RS26100;product=cell division protein FtsQ;protein_id=WP_000075728.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	37856	38776	.	-	.	ID=gene-CFSAN001082_RS26105;Name=CFSAN001082_RS26105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26105;old_locus_tag=CFSAN001082_02011
NZ_APAH01000031.1	Protein Homology	CDS	37856	38776	.	-	0	ID=cds-WP_000763906.1;Parent=gene-CFSAN001082_RS26105;Dbxref=GenBank:WP_000763906.1;Name=WP_000763906.1;Ontology_term=GO:0009252,GO:0005524,GO:0008716,GO:0046872;gbkey=CDS;go_function=ATP binding|0005524||IEA,D-alanine-D-alanine ligase activity|0008716||IEA,metal ion binding|0046872||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459135.1;locus_tag=CFSAN001082_RS26105;product=D-alanine--D-alanine ligase;protein_id=WP_000763906.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	38769	40244	.	-	.	ID=gene-CFSAN001082_RS26110;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26110;old_locus_tag=CFSAN001082_02016
NZ_APAH01000031.1	Protein Homology	CDS	38769	40244	.	-	0	ID=cds-WP_001096072.1;Parent=gene-CFSAN001082_RS26110;Dbxref=GenBank:WP_001096072.1;Name=WP_001096072.1;Ontology_term=GO:0009252,GO:0008763;gbkey=CDS;gene=murC;go_function=UDP-N-acetylmuramate-L-alanine ligase activity|0008763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459134.1;locus_tag=CFSAN001082_RS26110;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_001096072.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	40363	41430	.	-	.	ID=gene-CFSAN001082_RS26115;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26115;old_locus_tag=CFSAN001082_02021
NZ_APAH01000031.1	Protein Homology	CDS	40363	41430	.	-	0	ID=cds-WP_000016613.1;Parent=gene-CFSAN001082_RS26115;Dbxref=GenBank:WP_000016613.1;Name=WP_000016613.1;Ontology_term=GO:0009252,GO:0050511;gbkey=CDS;gene=murG;go_function=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity|0050511||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459133.1;locus_tag=CFSAN001082_RS26115;product=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase;protein_id=WP_000016613.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	41427	42671	.	-	.	ID=gene-CFSAN001082_RS26120;Name=ftsW;gbkey=Gene;gene=ftsW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26120;old_locus_tag=CFSAN001082_02026
NZ_APAH01000031.1	Protein Homology	CDS	41427	42671	.	-	0	ID=cds-WP_001239803.1;Parent=gene-CFSAN001082_RS26120;Dbxref=GenBank:WP_001239803.1;Name=WP_001239803.1;Ontology_term=GO:0051301;gbkey=CDS;gene=ftsW;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459132.1;locus_tag=CFSAN001082_RS26120;product=cell division protein FtsW;protein_id=WP_001239803.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	42671	43987	.	-	.	ID=gene-CFSAN001082_RS26125;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26125;old_locus_tag=CFSAN001082_02031
NZ_APAH01000031.1	Protein Homology	CDS	42671	43987	.	-	0	ID=cds-WP_023253802.1;Parent=gene-CFSAN001082_RS26125;Dbxref=GenBank:WP_023253802.1;Name=WP_023253802.1;Ontology_term=GO:0008360,GO:0009252,GO:0051301,GO:0005524,GO:0008764,GO:0005737;gbkey=CDS;gene=murD;go_component=cytoplasm|0005737||IEA;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoylalanine-D-glutamate ligase activity|0008764||IEA;go_process=regulation of cell shape|0008360||IEA,peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124612.1;locus_tag=CFSAN001082_RS26125;product=UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase;protein_id=WP_023253802.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	43990	45072	.	-	.	ID=gene-CFSAN001082_RS26130;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26130;old_locus_tag=CFSAN001082_02036
NZ_APAH01000031.1	Protein Homology	CDS	43990	45072	.	-	0	ID=cds-WP_000964138.1;Parent=gene-CFSAN001082_RS26130;Dbxref=GenBank:WP_000964138.1;Name=WP_000964138.1;Ontology_term=GO:0009252,GO:0008963,GO:0016020;gbkey=CDS;gene=mraY;go_component=membrane|0016020||IEA;go_function=phospho-N-acetylmuramoyl-pentapeptide-transferase activity|0008963||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124610.1;locus_tag=CFSAN001082_RS26130;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=WP_000964138.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	45066	46424	.	-	.	ID=gene-CFSAN001082_RS26135;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26135;old_locus_tag=CFSAN001082_02041
NZ_APAH01000031.1	Protein Homology	CDS	45066	46424	.	-	0	ID=cds-WP_000626639.1;Parent=gene-CFSAN001082_RS26135;Dbxref=GenBank:WP_000626639.1;Name=WP_000626639.1;Ontology_term=GO:0009058,GO:0071555,GO:0005524,GO:0047480;gbkey=CDS;gene=murF;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity|0047480||IEA;go_process=biosynthetic process|0009058||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459129.1;locus_tag=CFSAN001082_RS26135;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_000626639.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	46421	47908	.	-	.	ID=gene-CFSAN001082_RS26140;Name=murE;gbkey=Gene;gene=murE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26140;old_locus_tag=CFSAN001082_02046
NZ_APAH01000031.1	Protein Homology	CDS	46421	47908	.	-	0	ID=cds-WP_000775073.1;Parent=gene-CFSAN001082_RS26140;Dbxref=GenBank:WP_000775073.1;Name=WP_000775073.1;Ontology_term=GO:0008360,GO:0009058,GO:0051301,GO:0005524,GO:0016881;gbkey=CDS;gene=murE;go_function=ATP binding|0005524||IEA,acid-amino acid ligase activity|0016881||IEA;go_process=regulation of cell shape|0008360||IEA,biosynthetic process|0009058||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459128.1;locus_tag=CFSAN001082_RS26140;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase;protein_id=WP_000775073.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	47895	49661	.	-	.	ID=gene-CFSAN001082_RS26145;Name=ftsI;gbkey=Gene;gene=ftsI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26145;old_locus_tag=CFSAN001082_02051
NZ_APAH01000031.1	Protein Homology	CDS	47895	49661	.	-	0	ID=cds-WP_000642235.1;Parent=gene-CFSAN001082_RS26145;Dbxref=GenBank:WP_000642235.1;Name=WP_000642235.1;gbkey=CDS;gene=ftsI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000642204.1;locus_tag=CFSAN001082_RS26145;product=peptidoglycan glycosyltransferase FtsI;protein_id=WP_000642235.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	49677	50042	.	-	.	ID=gene-CFSAN001082_RS26150;Name=ftsL;gbkey=Gene;gene=ftsL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26150;old_locus_tag=CFSAN001082_02056
NZ_APAH01000031.1	Protein Homology	CDS	49677	50042	.	-	0	ID=cds-WP_000625651.1;Parent=gene-CFSAN001082_RS26150;Dbxref=GenBank:WP_000625651.1;Name=WP_000625651.1;gbkey=CDS;gene=ftsL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000625658.1;locus_tag=CFSAN001082_RS26150;product=cell division protein FtsL;protein_id=WP_000625651.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	50039	50980	.	-	.	ID=gene-CFSAN001082_RS26155;Name=rsmH;gbkey=Gene;gene=rsmH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26155;old_locus_tag=CFSAN001082_02061
NZ_APAH01000031.1	Protein Homology	CDS	50039	50980	.	-	0	ID=cds-WP_000970443.1;Parent=gene-CFSAN001082_RS26155;Dbxref=GenBank:WP_000970443.1;Name=WP_000970443.1;Ontology_term=GO:0016434;gbkey=CDS;gene=rsmH;go_function=rRNA (cytosine) methyltransferase activity|0016434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124563.1;locus_tag=CFSAN001082_RS26155;product=16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH;protein_id=WP_000970443.1;transl_table=11
NZ_APAH01000031.1	RefSeq	gene	50982	51440	.	-	.	ID=gene-CFSAN001082_RS26160;Name=mraZ;gbkey=Gene;gene=mraZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26160;old_locus_tag=CFSAN001082_02066
NZ_APAH01000031.1	Protein Homology	CDS	50982	51440	.	-	0	ID=cds-WP_000488294.1;Parent=gene-CFSAN001082_RS26160;Dbxref=GenBank:WP_000488294.1;Name=WP_000488294.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=mraZ;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020325403.1;locus_tag=CFSAN001082_RS26160;product=division/cell wall cluster transcriptional repressor MraZ;protein_id=WP_000488294.1;transl_table=11
##sequence-region NZ_APAH01000032.1 1 18622
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000032.1	RefSeq	region	1	18622	.	+	.	ID=NZ_APAH01000032.1:1..18622;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000032.1	RefSeq	gene	92	4315	.	-	.	ID=gene-CFSAN001082_RS26165;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26165;old_locus_tag=CFSAN001082_02071
NZ_APAH01000032.1	Protein Homology	CDS	92	4315	.	-	0	ID=cds-WP_000653965.1;Parent=gene-CFSAN001082_RS26165;Dbxref=GenBank:WP_000653965.1;Name=WP_000653965.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899;gbkey=CDS;gene=rpoC;go_function=DNA binding|0003677||IEA,DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463023.1;locus_tag=CFSAN001082_RS26165;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_000653965.1;transl_table=11
NZ_APAH01000032.1	RefSeq	gene	4392	8420	.	-	.	ID=gene-CFSAN001082_RS26170;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26170;old_locus_tag=CFSAN001082_02076
NZ_APAH01000032.1	Protein Homology	CDS	4392	8420	.	-	0	ID=cds-WP_000263105.1;Parent=gene-CFSAN001082_RS26170;Dbxref=GenBank:WP_000263105.1;Name=WP_000263105.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899;gbkey=CDS;gene=rpoB;go_function=DNA binding|0003677||IEA,DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004870488.1;locus_tag=CFSAN001082_RS26170;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_000263105.1;transl_table=11
NZ_APAH01000032.1	RefSeq	gene	8738	9103	.	-	.	ID=gene-CFSAN001082_RS26175;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26175;old_locus_tag=CFSAN001082_02081
NZ_APAH01000032.1	Protein Homology	CDS	8738	9103	.	-	0	ID=cds-WP_000028882.1;Parent=gene-CFSAN001082_RS26175;Dbxref=GenBank:WP_000028882.1;Name=WP_000028882.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplL;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122872.1;locus_tag=CFSAN001082_RS26175;product=50S ribosomal protein L7/L12;protein_id=WP_000028882.1;transl_table=11
NZ_APAH01000032.1	RefSeq	gene	9170	9667	.	-	.	ID=gene-CFSAN001082_RS26180;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26180;old_locus_tag=CFSAN001082_02086
NZ_APAH01000032.1	Protein Homology	CDS	9170	9667	.	-	0	ID=cds-WP_001207203.1;Parent=gene-CFSAN001082_RS26180;Dbxref=GenBank:WP_001207203.1;Name=WP_001207203.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplJ;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002438625.1;locus_tag=CFSAN001082_RS26180;product=50S ribosomal protein L10;protein_id=WP_001207203.1;transl_table=11
NZ_APAH01000032.1	RefSeq	gene	10083	10787	.	-	.	ID=gene-CFSAN001082_RS26185;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26185;old_locus_tag=CFSAN001082_02091
NZ_APAH01000032.1	Protein Homology	CDS	10083	10787	.	-	0	ID=cds-WP_001096676.1;Parent=gene-CFSAN001082_RS26185;Dbxref=GenBank:WP_001096676.1;Name=WP_001096676.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0015934;gbkey=CDS;gene=rplA;go_component=large ribosomal subunit|0015934||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463019.1;locus_tag=CFSAN001082_RS26185;product=50S ribosomal protein L1;protein_id=WP_001096676.1;transl_table=11
NZ_APAH01000032.1	RefSeq	gene	10791	11219	.	-	.	ID=gene-CFSAN001082_RS26190;Name=rplK;gbkey=Gene;gene=rplK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26190;old_locus_tag=CFSAN001082_02096
NZ_APAH01000032.1	Protein Homology	CDS	10791	11219	.	-	0	ID=cds-WP_001085926.1;Parent=gene-CFSAN001082_RS26190;Dbxref=GenBank:WP_001085926.1;Name=WP_001085926.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006121495.1;locus_tag=CFSAN001082_RS26190;product=50S ribosomal protein L11;protein_id=WP_001085926.1;transl_table=11
NZ_APAH01000032.1	RefSeq	gene	11377	11922	.	-	.	ID=gene-CFSAN001082_RS26195;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26195;old_locus_tag=CFSAN001082_02101
NZ_APAH01000032.1	Protein Homology	CDS	11377	11922	.	-	0	ID=cds-WP_001287521.1;Parent=gene-CFSAN001082_RS26195;Dbxref=GenBank:WP_001287521.1;Name=WP_001287521.1;Ontology_term=GO:0032784;gbkey=CDS;gene=nusG;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005280494.1;locus_tag=CFSAN001082_RS26195;product=transcription termination/antitermination protein NusG;protein_id=WP_001287521.1;transl_table=11
NZ_APAH01000032.1	RefSeq	gene	11924	12307	.	-	.	ID=gene-CFSAN001082_RS26200;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26200;old_locus_tag=CFSAN001082_02106
NZ_APAH01000032.1	Protein Homology	CDS	11924	12307	.	-	0	ID=cds-WP_001275691.1;Parent=gene-CFSAN001082_RS26200;Dbxref=GenBank:WP_001275691.1;Name=WP_001275691.1;gbkey=CDS;gene=secE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007665874.1;locus_tag=CFSAN001082_RS26200;product=preprotein translocase subunit SecE;protein_id=WP_001275691.1;transl_table=11
NZ_APAH01000032.1	RefSeq	gene	12537	13721	.	-	.	ID=gene-CFSAN001082_RS26205;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26205;old_locus_tag=CFSAN001082_02111
NZ_APAH01000032.1	Protein Homology	CDS	12537	13721	.	-	0	ID=cds-WP_000031748.1;Parent=gene-CFSAN001082_RS26205;Dbxref=GenBank:WP_000031748.1;Name=WP_000031748.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462349.1;locus_tag=CFSAN001082_RS26205;product=elongation factor Tu;protein_id=WP_000031748.1;transl_table=11
NZ_APAH01000032.1	RefSeq	gene	13837	13912	.	-	.	ID=gene-CFSAN001082_RS26210;Name=CFSAN001082_RS26210;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS26210;old_locus_tag=CFSAN001082_t02133
NZ_APAH01000032.1	tRNAscan-SE	tRNA	13837	13912	.	-	.	ID=rna-CFSAN001082_RS26210;Parent=gene-CFSAN001082_RS26210;anticodon=(pos:complement(13877..13879));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS26210;product=tRNA-Thr
NZ_APAH01000032.1	tRNAscan-SE	exon	13837	13912	.	-	.	ID=exon-CFSAN001082_RS26210-1;Parent=rna-CFSAN001082_RS26210;anticodon=(pos:complement(13877..13879));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS26210;product=tRNA-Thr
NZ_APAH01000032.1	RefSeq	gene	13919	13993	.	-	.	ID=gene-CFSAN001082_RS26215;Name=CFSAN001082_RS26215;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS26215;old_locus_tag=CFSAN001082_t02135
NZ_APAH01000032.1	tRNAscan-SE	tRNA	13919	13993	.	-	.	ID=rna-CFSAN001082_RS26215;Parent=gene-CFSAN001082_RS26215;anticodon=(pos:complement(13958..13960));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS26215;product=tRNA-Gly
NZ_APAH01000032.1	tRNAscan-SE	exon	13919	13993	.	-	.	ID=exon-CFSAN001082_RS26215-1;Parent=rna-CFSAN001082_RS26215;anticodon=(pos:complement(13958..13960));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS26215;product=tRNA-Gly
NZ_APAH01000032.1	RefSeq	gene	14110	14194	.	-	.	ID=gene-CFSAN001082_RS26220;Name=CFSAN001082_RS26220;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS26220;old_locus_tag=CFSAN001082_t02137
NZ_APAH01000032.1	tRNAscan-SE	tRNA	14110	14194	.	-	.	ID=rna-CFSAN001082_RS26220;Parent=gene-CFSAN001082_RS26220;anticodon=(pos:complement(14158..14160));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS26220;product=tRNA-Tyr
NZ_APAH01000032.1	tRNAscan-SE	exon	14110	14194	.	-	.	ID=exon-CFSAN001082_RS26220-1;Parent=rna-CFSAN001082_RS26220;anticodon=(pos:complement(14158..14160));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS26220;product=tRNA-Tyr
NZ_APAH01000032.1	RefSeq	gene	14203	14278	.	-	.	ID=gene-CFSAN001082_RS26225;Name=CFSAN001082_RS26225;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS26225;old_locus_tag=CFSAN001082_t02139
NZ_APAH01000032.1	tRNAscan-SE	tRNA	14203	14278	.	-	.	ID=rna-CFSAN001082_RS26225;Parent=gene-CFSAN001082_RS26225;anticodon=(pos:complement(14243..14245));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS26225;product=tRNA-Thr
NZ_APAH01000032.1	tRNAscan-SE	exon	14203	14278	.	-	.	ID=exon-CFSAN001082_RS26225-1;Parent=rna-CFSAN001082_RS26225;anticodon=(pos:complement(14243..14245));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS26225;product=tRNA-Thr
NZ_APAH01000032.1	RefSeq	gene	14298	14471	.	+	.	ID=gene-CFSAN001082_RS0122855;Name=CFSAN001082_RS0122855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0122855
NZ_APAH01000032.1	Protein Homology	CDS	14298	14471	.	+	0	ID=cds-WP_001541267.1;Parent=gene-CFSAN001082_RS0122855;Dbxref=GenBank:WP_001541267.1;Name=WP_001541267.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463014.1;locus_tag=CFSAN001082_RS0122855;product=hypothetical protein;protein_id=WP_001541267.1;transl_table=11
NZ_APAH01000032.1	RefSeq	gene	14680	15630	.	+	.	ID=gene-CFSAN001082_RS26230;Name=coaA;gbkey=Gene;gene=coaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26230;old_locus_tag=CFSAN001082_02116
NZ_APAH01000032.1	Protein Homology	CDS	14680	15630	.	+	0	ID=cds-WP_000023068.1;Parent=gene-CFSAN001082_RS26230;Dbxref=GenBank:WP_000023068.1;Name=WP_000023068.1;Ontology_term=GO:0015937,GO:0004594;gbkey=CDS;gene=coaA;go_function=pantothenate kinase activity|0004594||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463013.1;locus_tag=CFSAN001082_RS26230;product=type I pantothenate kinase;protein_id=WP_000023068.1;transl_table=11
NZ_APAH01000032.1	RefSeq	gene	15665	16627	.	-	.	ID=gene-CFSAN001082_RS26235;Name=birA;gbkey=Gene;gene=birA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26235;old_locus_tag=CFSAN001082_02121
NZ_APAH01000032.1	Protein Homology	CDS	15665	16627	.	-	0	ID=cds-WP_000655746.1;Parent=gene-CFSAN001082_RS26235;Dbxref=GenBank:WP_000655746.1;Name=WP_000655746.1;Ontology_term=GO:0036211,GO:0004077;gbkey=CDS;gene=birA;go_function=biotin--[biotin carboxyl-carrier protein] ligase activity|0004077||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463012.1;locus_tag=CFSAN001082_RS26235;product=bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA;protein_id=WP_000655746.1;transl_table=11
NZ_APAH01000032.1	RefSeq	gene	16624	17652	.	-	.	ID=gene-CFSAN001082_RS26240;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26240;old_locus_tag=CFSAN001082_02126
NZ_APAH01000032.1	Protein Homology	CDS	16624	17652	.	-	0	ID=cds-WP_000149795.1;Parent=gene-CFSAN001082_RS26240;Dbxref=GenBank:WP_000149795.1;Name=WP_000149795.1;Ontology_term=GO:0008762,GO:0071949;gbkey=CDS;gene=murB;go_function=UDP-N-acetylmuramate dehydrogenase activity|0008762||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463011.1;locus_tag=CFSAN001082_RS26240;product=UDP-N-acetylmuramate dehydrogenase;protein_id=WP_000149795.1;transl_table=11
NZ_APAH01000032.1	RefSeq	gene	17834	17949	.	-	.	ID=gene-CFSAN001082_RS26245;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=CFSAN001082_RS26245;old_locus_tag=CFSAN001082_r02141
NZ_APAH01000032.1	cmsearch	rRNA	17834	17949	.	-	.	ID=rna-CFSAN001082_RS26245;Parent=gene-CFSAN001082_RS26245;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS26245;product=5S ribosomal RNA
NZ_APAH01000032.1	cmsearch	exon	17834	17949	.	-	.	ID=exon-CFSAN001082_RS26245-1;Parent=rna-CFSAN001082_RS26245;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS26245;product=5S ribosomal RNA
NZ_APAH01000032.1	RefSeq	gene	18147	18622	.	-	.	ID=gene-CFSAN001082_RS26250;Name=CFSAN001082_RS26250;end_range=18622,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS26250;old_locus_tag=CFSAN001082_r02143;partial=true
NZ_APAH01000032.1	cmsearch	rRNA	18147	18622	.	-	.	ID=rna-CFSAN001082_RS26250;Parent=gene-CFSAN001082_RS26250;Dbxref=RFAM:RF02541;end_range=18622,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS26250;partial=true;product=23S ribosomal RNA
NZ_APAH01000032.1	cmsearch	exon	18147	18622	.	-	.	ID=exon-CFSAN001082_RS26250-1;Parent=rna-CFSAN001082_RS26250;Dbxref=RFAM:RF02541;end_range=18622,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS26250;partial=true;product=23S ribosomal RNA
##sequence-region NZ_APAH01000033.1 1 50627
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000033.1	RefSeq	region	1	50627	.	+	.	ID=NZ_APAH01000033.1:1..50627;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000033.1	RefSeq	gene	118	1161	.	+	.	ID=gene-CFSAN001082_RS26255;Name=CFSAN001082_RS26255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26255;old_locus_tag=CFSAN001082_02143
NZ_APAH01000033.1	Protein Homology	CDS	118	1161	.	+	0	ID=cds-WP_001270668.1;Parent=gene-CFSAN001082_RS26255;Dbxref=GenBank:WP_001270668.1;Name=WP_001270668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461411.1;locus_tag=CFSAN001082_RS26255;product=DUF1176 domain-containing protein;protein_id=WP_001270668.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	1289	1519	.	+	.	ID=gene-CFSAN001082_RS26260;Name=CFSAN001082_RS26260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26260;old_locus_tag=CFSAN001082_02148
NZ_APAH01000033.1	Protein Homology	CDS	1289	1519	.	+	0	ID=cds-WP_000700635.1;Parent=gene-CFSAN001082_RS26260;Dbxref=GenBank:WP_000700635.1;Name=WP_000700635.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461410.1;locus_tag=CFSAN001082_RS26260;product=hypothetical protein;protein_id=WP_000700635.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	1582	3582	.	-	.	ID=gene-CFSAN001082_RS26265;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26265;old_locus_tag=CFSAN001082_02153
NZ_APAH01000033.1	Protein Homology	CDS	1582	3582	.	-	0	ID=cds-WP_000087326.1;Parent=gene-CFSAN001082_RS26265;Dbxref=GenBank:WP_000087326.1;Name=WP_000087326.1;Ontology_term=GO:0004802;gbkey=CDS;gene=tkt;go_function=transketolase activity|0004802||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461409.1;locus_tag=CFSAN001082_RS26265;product=transketolase;protein_id=WP_000087326.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	3602	4552	.	-	.	ID=gene-CFSAN001082_RS26270;Name=tal;gbkey=Gene;gene=tal;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26270;old_locus_tag=CFSAN001082_02158
NZ_APAH01000033.1	Protein Homology	CDS	3602	4552	.	-	0	ID=cds-WP_023181777.1;Parent=gene-CFSAN001082_RS26270;Dbxref=GenBank:WP_023181777.1;Name=WP_023181777.1;Ontology_term=GO:0006098,GO:0004801,GO:0005737;gbkey=CDS;gene=tal;go_component=cytoplasm|0005737||IEA;go_function=transaldolase activity|0004801||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461408.1;locus_tag=CFSAN001082_RS26270;product=transaldolase;protein_id=WP_023181777.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	4824	7103	.	+	.	ID=gene-CFSAN001082_RS26275;Name=maeB;gbkey=Gene;gene=maeB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26275;old_locus_tag=CFSAN001082_02163
NZ_APAH01000033.1	Protein Homology	CDS	4824	7103	.	+	0	ID=cds-WP_000344299.1;Parent=gene-CFSAN001082_RS26275;Dbxref=GenBank:WP_000344299.1;Name=WP_000344299.1;gbkey=CDS;gene=maeB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461407.1;locus_tag=CFSAN001082_RS26275;product=NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase;protein_id=WP_000344299.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	7520	7855	.	+	.	ID=gene-CFSAN001082_RS26280;Name=eutS;gbkey=Gene;gene=eutS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26280;old_locus_tag=CFSAN001082_02168
NZ_APAH01000033.1	Protein Homology	CDS	7520	7855	.	+	0	ID=cds-WP_001031445.1;Parent=gene-CFSAN001082_RS26280;Dbxref=GenBank:WP_001031445.1;Name=WP_001031445.1;gbkey=CDS;gene=eutS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461405.1;locus_tag=CFSAN001082_RS26280;product=ethanolamine utilization microcompartment protein EutS;protein_id=WP_001031445.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	7868	8347	.	+	.	ID=gene-CFSAN001082_RS26285;Name=eutP;gbkey=Gene;gene=eutP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26285;old_locus_tag=CFSAN001082_02173
NZ_APAH01000033.1	Protein Homology	CDS	7868	8347	.	+	0	ID=cds-WP_000820751.1;Parent=gene-CFSAN001082_RS26285;Dbxref=GenBank:WP_000820751.1;Name=WP_000820751.1;gbkey=CDS;gene=eutP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461404.1;locus_tag=CFSAN001082_RS26285;product=ethanolamine utilization acetate kinase EutP;protein_id=WP_000820751.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	8325	9014	.	+	.	ID=gene-CFSAN001082_RS26290;Name=eutQ;gbkey=Gene;gene=eutQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26290;old_locus_tag=CFSAN001082_02178
NZ_APAH01000033.1	Protein Homology	CDS	8325	9014	.	+	0	ID=cds-WP_000733861.1;Parent=gene-CFSAN001082_RS26290;Dbxref=GenBank:WP_000733861.1;Name=WP_000733861.1;gbkey=CDS;gene=eutQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461403.1;locus_tag=CFSAN001082_RS26290;product=ethanolamine utilization acetate kinase EutQ;protein_id=WP_000733861.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	9011	9814	.	+	.	ID=gene-CFSAN001082_RS26295;Name=eutT;gbkey=Gene;gene=eutT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26295;old_locus_tag=CFSAN001082_02183
NZ_APAH01000033.1	Protein Homology	CDS	9011	9814	.	+	0	ID=cds-WP_000997661.1;Parent=gene-CFSAN001082_RS26295;Dbxref=GenBank:WP_000997661.1;Name=WP_000997661.1;Ontology_term=GO:0006580,GO:0008817;gbkey=CDS;gene=eutT;go_function=corrinoid adenosyltransferase activity|0008817||IEA;go_process=ethanolamine metabolic process|0006580||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461402.1;locus_tag=CFSAN001082_RS26295;product=ethanolamine utilization cob(I)yrinic acid a%2Cc-diamide adenosyltransferase EutT;protein_id=WP_000997661.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	9811	10827	.	+	.	ID=gene-CFSAN001082_RS26300;Name=pta;gbkey=Gene;gene=pta;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26300;old_locus_tag=CFSAN001082_02188
NZ_APAH01000033.1	Protein Homology	CDS	9811	10827	.	+	0	ID=cds-WP_000582929.1;Parent=gene-CFSAN001082_RS26300;Dbxref=GenBank:WP_000582929.1;Name=WP_000582929.1;Ontology_term=GO:0006086,GO:0008959;gbkey=CDS;gene=pta;go_function=phosphate acetyltransferase activity|0008959||IEA;go_process=pyruvate decarboxylation to acetyl-CoA|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461401.1;locus_tag=CFSAN001082_RS26300;product=phosphate acetyltransferase;protein_id=WP_000582929.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	10868	11158	.	+	.	ID=gene-CFSAN001082_RS26305;Name=eutM;gbkey=Gene;gene=eutM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26305;old_locus_tag=CFSAN001082_02193
NZ_APAH01000033.1	Protein Homology	CDS	10868	11158	.	+	0	ID=cds-WP_023253803.1;Parent=gene-CFSAN001082_RS26305;Dbxref=GenBank:WP_023253803.1;Name=WP_023253803.1;gbkey=CDS;gene=eutM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461400.1;locus_tag=CFSAN001082_RS26305;product=ethanolamine utilization microcompartment protein EutM;protein_id=WP_023253803.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	11271	11558	.	+	.	ID=gene-CFSAN001082_RS26310;Name=eutN;gbkey=Gene;gene=eutN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26310;old_locus_tag=CFSAN001082_02198
NZ_APAH01000033.1	Protein Homology	CDS	11271	11558	.	+	0	ID=cds-WP_001522340.1;Parent=gene-CFSAN001082_RS26310;Dbxref=GenBank:WP_001522340.1;Name=WP_001522340.1;gbkey=CDS;gene=eutN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416951.1;locus_tag=CFSAN001082_RS26310;product=ethanolamine utilization microcompartment protein EutN;protein_id=WP_001522340.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	11570	12973	.	+	.	ID=gene-CFSAN001082_RS26315;Name=CFSAN001082_RS26315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26315;old_locus_tag=CFSAN001082_02203
NZ_APAH01000033.1	Protein Homology	CDS	11570	12973	.	+	0	ID=cds-WP_001075640.1;Parent=gene-CFSAN001082_RS26315;Dbxref=GenBank:WP_001075640.1;Name=WP_001075640.1;Ontology_term=GO:0004029,GO:0008774;gbkey=CDS;go_function=aldehyde dehydrogenase (NAD+) activity|0004029||IEA,acetaldehyde dehydrogenase (acetylating) activity|0008774||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461398.1;locus_tag=CFSAN001082_RS26315;product=aldehyde dehydrogenase family protein;protein_id=WP_001075640.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	12984	13823	.	+	.	ID=gene-CFSAN001082_RS26320;Name=eutJ;gbkey=Gene;gene=eutJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26320;old_locus_tag=CFSAN001082_02208
NZ_APAH01000033.1	Protein Homology	CDS	12984	13823	.	+	0	ID=cds-WP_023253804.1;Parent=gene-CFSAN001082_RS26320;Dbxref=GenBank:WP_023253804.1;Name=WP_023253804.1;Ontology_term=GO:0051301,GO:0005515;gbkey=CDS;gene=eutJ;go_function=protein binding|0005515||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461397.1;locus_tag=CFSAN001082_RS26320;product=ethanolamine utilization protein EutJ;protein_id=WP_023253804.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	13813	15000	.	+	.	ID=gene-CFSAN001082_RS26325;Name=eutG;gbkey=Gene;gene=eutG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26325;old_locus_tag=CFSAN001082_02213
NZ_APAH01000033.1	Protein Homology	CDS	13813	15000	.	+	0	ID=cds-WP_001147505.1;Parent=gene-CFSAN001082_RS26325;Dbxref=GenBank:WP_001147505.1;Name=WP_001147505.1;Ontology_term=GO:0016491;gbkey=CDS;gene=eutG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461396.1;locus_tag=CFSAN001082_RS26325;product=ethanolamine utilization ethanol dehydrogenase EutG;protein_id=WP_001147505.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	15120	16346	.	+	.	ID=gene-CFSAN001082_RS26330;Name=eutH;gbkey=Gene;gene=eutH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26330;old_locus_tag=CFSAN001082_02218
NZ_APAH01000033.1	Protein Homology	CDS	15120	16346	.	+	0	ID=cds-WP_000512359.1;Parent=gene-CFSAN001082_RS26330;Dbxref=GenBank:WP_000512359.1;Name=WP_000512359.1;Ontology_term=GO:0034229,GO:0034228,GO:0016020;gbkey=CDS;gene=eutH;go_component=membrane|0016020||IEA;go_function=ethanolamine transmembrane transporter activity|0034228||IEA;go_process=ethanolamine transport|0034229||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461395.1;locus_tag=CFSAN001082_RS26330;product=ethanolamine utilization protein EutH;protein_id=WP_000512359.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	16343	17746	.	+	.	ID=gene-CFSAN001082_RS26335;Name=eutA;gbkey=Gene;gene=eutA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26335;old_locus_tag=CFSAN001082_02223
NZ_APAH01000033.1	Protein Homology	CDS	16343	17746	.	+	0	ID=cds-WP_001097518.1;Parent=gene-CFSAN001082_RS26335;Dbxref=GenBank:WP_001097518.1;Name=WP_001097518.1;gbkey=CDS;gene=eutA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461394.1;locus_tag=CFSAN001082_RS26335;product=ethanolamine ammonia-lyase reactivating factor EutA;protein_id=WP_001097518.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	17758	19119	.	+	.	ID=gene-CFSAN001082_RS26340;Name=eutB;gbkey=Gene;gene=eutB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26340;old_locus_tag=CFSAN001082_02228
NZ_APAH01000033.1	Protein Homology	CDS	17758	19119	.	+	0	ID=cds-WP_000769990.1;Parent=gene-CFSAN001082_RS26340;Dbxref=GenBank:WP_000769990.1;Name=WP_000769990.1;gbkey=CDS;gene=eutB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461393.1;locus_tag=CFSAN001082_RS26340;product=ethanolamine ammonia-lyase subunit alpha;protein_id=WP_000769990.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	19138	20034	.	+	.	ID=gene-CFSAN001082_RS26345;Name=eutC;gbkey=Gene;gene=eutC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26345;old_locus_tag=CFSAN001082_02233
NZ_APAH01000033.1	Protein Homology	CDS	19138	20034	.	+	0	ID=cds-WP_000372336.1;Parent=gene-CFSAN001082_RS26345;Dbxref=GenBank:WP_000372336.1;Name=WP_000372336.1;Ontology_term=GO:0006520,GO:0008851;gbkey=CDS;gene=eutC;go_function=ethanolamine ammonia-lyase activity|0008851||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461392.1;locus_tag=CFSAN001082_RS26345;product=ethanolamine ammonia-lyase subunit EutC;protein_id=WP_000372336.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	20044	20703	.	+	.	ID=gene-CFSAN001082_RS26350;Name=eutL;gbkey=Gene;gene=eutL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26350;old_locus_tag=CFSAN001082_02238
NZ_APAH01000033.1	Protein Homology	CDS	20044	20703	.	+	0	ID=cds-WP_001111056.1;Parent=gene-CFSAN001082_RS26350;Dbxref=GenBank:WP_001111056.1;Name=WP_001111056.1;Ontology_term=GO:0005198,GO:0031469;gbkey=CDS;gene=eutL;go_component=bacterial microcompartment|0031469||IEA;go_function=structural molecule activity|0005198||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461391.1;locus_tag=CFSAN001082_RS26350;product=ethanolamine utilization microcompartment protein EutL;protein_id=WP_001111056.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	20716	21210	.	+	.	ID=gene-CFSAN001082_RS26355;Name=eutK;gbkey=Gene;gene=eutK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26355;old_locus_tag=CFSAN001082_02243
NZ_APAH01000033.1	Protein Homology	CDS	20716	21210	.	+	0	ID=cds-WP_000606266.1;Parent=gene-CFSAN001082_RS26355;Dbxref=GenBank:WP_000606266.1;Name=WP_000606266.1;gbkey=CDS;gene=eutK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461390.1;locus_tag=CFSAN001082_RS26355;product=ethanolamine utilization microcompartment protein EutK;protein_id=WP_000606266.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	21258	22310	.	+	.	ID=gene-CFSAN001082_RS26360;Name=eutR;gbkey=Gene;gene=eutR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26360;old_locus_tag=CFSAN001082_02248
NZ_APAH01000033.1	Protein Homology	CDS	21258	22310	.	+	0	ID=cds-WP_000753665.1;Parent=gene-CFSAN001082_RS26360;Dbxref=GenBank:WP_000753665.1;Name=WP_000753665.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=eutR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461389.1;locus_tag=CFSAN001082_RS26360;product=HTH-type transcriptional regulator EutR;protein_id=WP_000753665.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	22510	23787	.	-	.	ID=gene-CFSAN001082_RS26365;Name=CFSAN001082_RS26365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26365;old_locus_tag=CFSAN001082_02253
NZ_APAH01000033.1	Protein Homology	CDS	22510	23787	.	-	0	ID=cds-WP_031612602.1;Parent=gene-CFSAN001082_RS26365;Dbxref=GenBank:WP_031612602.1;Name=WP_031612602.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461388.1;locus_tag=CFSAN001082_RS26365;product=DUF1963 domain-containing protein;protein_id=WP_031612602.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	23916	24245	.	-	.	ID=gene-CFSAN001082_RS26370;Name=CFSAN001082_RS26370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26370;old_locus_tag=CFSAN001082_02258
NZ_APAH01000033.1	Protein Homology	CDS	23916	24245	.	-	0	ID=cds-WP_001194343.1;Parent=gene-CFSAN001082_RS26370;Dbxref=GenBank:WP_001194343.1;Name=WP_001194343.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461387.1;locus_tag=CFSAN001082_RS26370;product=hypothetical protein;protein_id=WP_001194343.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	24266	25165	.	-	.	ID=gene-CFSAN001082_RS26375;Name=hemF;gbkey=Gene;gene=hemF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26375;old_locus_tag=CFSAN001082_02263
NZ_APAH01000033.1	Protein Homology	CDS	24266	25165	.	-	0	ID=cds-WP_000801339.1;Parent=gene-CFSAN001082_RS26375;Dbxref=GenBank:WP_000801339.1;Name=WP_000801339.1;Ontology_term=GO:0006779,GO:0004109;gbkey=CDS;gene=hemF;go_function=coproporphyrinogen oxidase activity|0004109||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461386.1;locus_tag=CFSAN001082_RS26375;product=oxygen-dependent coproporphyrinogen oxidase;protein_id=WP_000801339.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	25168	26037	.	-	.	ID=gene-CFSAN001082_RS26380;Name=amiA;gbkey=Gene;gene=amiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26380;old_locus_tag=CFSAN001082_02268
NZ_APAH01000033.1	Protein Homology	CDS	25168	26037	.	-	0	ID=cds-WP_000102880.1;Parent=gene-CFSAN001082_RS26380;Dbxref=GenBank:WP_000102880.1;Name=WP_000102880.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;gene=amiA;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461385.1;locus_tag=CFSAN001082_RS26380;product=N-acetylmuramoyl-L-alanine amidase AmiA;protein_id=WP_000102880.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	26250	26675	.	+	.	ID=gene-CFSAN001082_RS26385;Name=CFSAN001082_RS26385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26385;old_locus_tag=CFSAN001082_02273
NZ_APAH01000033.1	Protein Homology	CDS	26250	26675	.	+	0	ID=cds-WP_000406008.1;Parent=gene-CFSAN001082_RS26385;Dbxref=GenBank:WP_000406008.1;Name=WP_000406008.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311332.2;locus_tag=CFSAN001082_RS26385;product=GNAT family acetyltransferase;protein_id=WP_000406008.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	26662	27111	.	+	.	ID=gene-CFSAN001082_RS26390;Name=CFSAN001082_RS26390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26390;old_locus_tag=CFSAN001082_02278
NZ_APAH01000033.1	Protein Homology	CDS	26662	27111	.	+	0	ID=cds-WP_000842940.1;Parent=gene-CFSAN001082_RS26390;Dbxref=GenBank:WP_000842940.1;Name=WP_000842940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461383.1;locus_tag=CFSAN001082_RS26390;product=DUF2919 domain-containing protein;protein_id=WP_000842940.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	27173	27748	.	+	.	ID=gene-CFSAN001082_RS26395;Name=CFSAN001082_RS26395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26395;old_locus_tag=CFSAN001082_02283
NZ_APAH01000033.1	Protein Homology	CDS	27173	27748	.	+	0	ID=cds-WP_000838971.1;Parent=gene-CFSAN001082_RS26395;Dbxref=GenBank:WP_000838971.1;Name=WP_000838971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461382.1;locus_tag=CFSAN001082_RS26395;product=RpoE-regulated lipoprotein;protein_id=WP_000838971.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	27843	28742	.	+	.	ID=gene-CFSAN001082_RS26400;Name=yfeX;gbkey=Gene;gene=yfeX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26400;old_locus_tag=CFSAN001082_02288
NZ_APAH01000033.1	Protein Homology	CDS	27843	28742	.	+	0	ID=cds-WP_000084583.1;Parent=gene-CFSAN001082_RS26400;Dbxref=GenBank:WP_000084583.1;Name=WP_000084583.1;gbkey=CDS;gene=yfeX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461381.1;locus_tag=CFSAN001082_RS26400;product=porphyrinogen peroxidase;protein_id=WP_000084583.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	28990	29781	.	+	.	ID=gene-CFSAN001082_RS26405;Name=ucpA;gbkey=Gene;gene=ucpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26405;old_locus_tag=CFSAN001082_02293
NZ_APAH01000033.1	Protein Homology	CDS	28990	29781	.	+	0	ID=cds-WP_000517460.1;Parent=gene-CFSAN001082_RS26405;Dbxref=GenBank:WP_000517460.1;Name=WP_000517460.1;gbkey=CDS;gene=ucpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461380.1;locus_tag=CFSAN001082_RS26405;product=SDR family oxidoreductase UcpA;protein_id=WP_000517460.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	29939	30955	.	+	.	ID=gene-CFSAN001082_RS26410;Name=cysP;gbkey=Gene;gene=cysP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26410;old_locus_tag=CFSAN001082_02298
NZ_APAH01000033.1	Protein Homology	CDS	29939	30955	.	+	0	ID=cds-WP_023195466.1;Parent=gene-CFSAN001082_RS26410;Dbxref=GenBank:WP_023195466.1;Name=WP_023195466.1;gbkey=CDS;gene=cysP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461379.1;locus_tag=CFSAN001082_RS26410;product=thiosulfate/sulfate ABC transporter substrate-binding protein CysP;protein_id=WP_023195466.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	30955	31788	.	+	.	ID=gene-CFSAN001082_RS26415;Name=cysT;gbkey=Gene;gene=cysT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26415;old_locus_tag=CFSAN001082_02303
NZ_APAH01000033.1	Protein Homology	CDS	30955	31788	.	+	0	ID=cds-WP_023253806.1;Parent=gene-CFSAN001082_RS26415;Dbxref=GenBank:WP_023253806.1;Name=WP_023253806.1;Ontology_term=GO:0055085,GO:1902358,GO:0015419,GO:0016020;gbkey=CDS;gene=cysT;go_component=membrane|0016020||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=transmembrane transport|0055085||IEA,sulfate transmembrane transport|1902358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000458418.1;locus_tag=CFSAN001082_RS26415;product=sulfate/thiosulfate ABC transporter permease CysT;protein_id=WP_023253806.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	31788	32663	.	+	.	ID=gene-CFSAN001082_RS26420;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26420;old_locus_tag=CFSAN001082_02308
NZ_APAH01000033.1	Protein Homology	CDS	31788	32663	.	+	0	ID=cds-WP_000852705.1;Parent=gene-CFSAN001082_RS26420;Dbxref=GenBank:WP_000852705.1;Name=WP_000852705.1;Ontology_term=GO:0055085,GO:1902358,GO:0015419,GO:0016020;gbkey=CDS;gene=cysW;go_component=membrane|0016020||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=transmembrane transport|0055085||IEA,sulfate transmembrane transport|1902358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461377.1;locus_tag=CFSAN001082_RS26420;product=sulfate/thiosulfate ABC transporter permease CysW;protein_id=WP_000852705.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	32653	33750	.	+	.	ID=gene-CFSAN001082_RS26425;Name=cysA;gbkey=Gene;gene=cysA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26425;old_locus_tag=CFSAN001082_02313
NZ_APAH01000033.1	Protein Homology	CDS	32653	33750	.	+	0	ID=cds-WP_000021076.1;Parent=gene-CFSAN001082_RS26425;Dbxref=GenBank:WP_000021076.1;Name=WP_000021076.1;Ontology_term=GO:1902358,GO:0005524,GO:0015419,GO:0016020,GO:0043190;gbkey=CDS;gene=cysA;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type sulfate transporter activity|0015419||IEA;go_process=sulfate transmembrane transport|1902358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461376.1;locus_tag=CFSAN001082_RS26425;product=sulfate/thiosulfate ABC transporter ATP-binding protein CysA;protein_id=WP_000021076.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	33818	34729	.	+	.	ID=gene-CFSAN001082_RS26430;Name=cysM;gbkey=Gene;gene=cysM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26430;old_locus_tag=CFSAN001082_02318
NZ_APAH01000033.1	Protein Homology	CDS	33818	34729	.	+	0	ID=cds-WP_001093876.1;Parent=gene-CFSAN001082_RS26430;Dbxref=GenBank:WP_001093876.1;Name=WP_001093876.1;Ontology_term=GO:0006535,GO:0004124;gbkey=CDS;gene=cysM;go_function=cysteine synthase activity|0004124||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461375.1;locus_tag=CFSAN001082_RS26430;product=cysteine synthase CysM;protein_id=WP_001093876.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	34860	35399	.	-	.	ID=gene-CFSAN001082_RS26435;Name=CFSAN001082_RS26435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26435;old_locus_tag=CFSAN001082_02323
NZ_APAH01000033.1	Protein Homology	CDS	34860	35399	.	-	0	ID=cds-WP_017441399.1;Parent=gene-CFSAN001082_RS26435;Dbxref=GenBank:WP_017441399.1;Name=WP_017441399.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461374.1;locus_tag=CFSAN001082_RS26435;product=transglycosylase domain-containing protein;protein_id=WP_017441399.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	35412	35792	.	-	.	ID=gene-CFSAN001082_RS26440;Name=CFSAN001082_RS26440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26440;old_locus_tag=CFSAN001082_02328
NZ_APAH01000033.1	Protein Homology	CDS	35412	35792	.	-	0	ID=cds-WP_000710730.1;Parent=gene-CFSAN001082_RS26440;Dbxref=GenBank:WP_000710730.1;Name=WP_000710730.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461373.2;locus_tag=CFSAN001082_RS26440;product=YfeK family protein;protein_id=WP_000710730.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	35851	36570	.	-	.	ID=gene-CFSAN001082_RS26445;Name=CFSAN001082_RS26445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26445;old_locus_tag=CFSAN001082_02333
NZ_APAH01000033.1	Protein Homology	CDS	35851	36570	.	-	0	ID=cds-WP_001650280.1;Parent=gene-CFSAN001082_RS26445;Dbxref=GenBank:WP_001650280.1;Name=WP_001650280.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461372.1;locus_tag=CFSAN001082_RS26445;product=type 1 glutamine amidotransferase;protein_id=WP_001650280.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	36585	37877	.	-	.	ID=gene-CFSAN001082_RS26450;Name=ptsJ;gbkey=Gene;gene=ptsJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26450;old_locus_tag=CFSAN001082_02338
NZ_APAH01000033.1	Protein Homology	CDS	36585	37877	.	-	0	ID=cds-WP_001650279.1;Parent=gene-CFSAN001082_RS26450;Dbxref=GenBank:WP_001650279.1;Name=WP_001650279.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ptsJ;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461371.1;locus_tag=CFSAN001082_RS26450;product=transcriptional regulator PtsJ;protein_id=WP_001650279.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	37960	38826	.	+	.	ID=gene-CFSAN001082_RS26455;Name=pdxK;gbkey=Gene;gene=pdxK;gene_biotype=protein_coding;gene_synonym=thiJ;locus_tag=CFSAN001082_RS26455;old_locus_tag=CFSAN001082_02343
NZ_APAH01000033.1	Protein Homology	CDS	37960	38826	.	+	0	ID=cds-WP_000529613.1;Parent=gene-CFSAN001082_RS26455;Dbxref=GenBank:WP_000529613.1;Name=WP_000529613.1;Ontology_term=GO:0009443,GO:0008478;gbkey=CDS;gene=pdxK;go_function=pyridoxal kinase activity|0008478||IEA;go_process=pyridoxal 5'-phosphate salvage|0009443||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461370.1;locus_tag=CFSAN001082_RS26455;product=pyridoxine/pyridoxal/pyridoxamine kinase;protein_id=WP_000529613.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	38823	39062	.	+	.	ID=gene-CFSAN001082_RS26460;Name=CFSAN001082_RS26460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26460;old_locus_tag=CFSAN001082_02348
NZ_APAH01000033.1	Protein Homology	CDS	38823	39062	.	+	0	ID=cds-WP_000844541.1;Parent=gene-CFSAN001082_RS26460;Dbxref=GenBank:WP_000844541.1;Name=WP_000844541.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461369.1;locus_tag=CFSAN001082_RS26460;product=hypothetical protein;protein_id=WP_000844541.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	39212	39721	.	-	.	ID=gene-CFSAN001082_RS26465;Name=crr;gbkey=Gene;gene=crr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26465;old_locus_tag=CFSAN001082_02353
NZ_APAH01000033.1	Protein Homology	CDS	39212	39721	.	-	0	ID=cds-WP_000522253.1;Parent=gene-CFSAN001082_RS26465;Dbxref=GenBank:WP_000522253.1;Name=WP_000522253.1;Ontology_term=GO:0009401;gbkey=CDS;gene=crr;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015833547.1;locus_tag=CFSAN001082_RS26465;product=PTS glucose transporter subunit IIA;protein_id=WP_000522253.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	39762	41489	.	-	.	ID=gene-CFSAN001082_RS26470;Name=ptsI;gbkey=Gene;gene=ptsI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26470;old_locus_tag=CFSAN001082_02358
NZ_APAH01000033.1	Protein Homology	CDS	39762	41489	.	-	0	ID=cds-WP_000623118.1;Parent=gene-CFSAN001082_RS26470;Dbxref=GenBank:WP_000623118.1;Name=WP_000623118.1;gbkey=CDS;gene=ptsI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004870786.1;locus_tag=CFSAN001082_RS26470;product=phosphoenolpyruvate-protein phosphotransferase PtsI;protein_id=WP_000623118.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	41538	41795	.	-	.	ID=gene-CFSAN001082_RS26475;Name=ptsH;gbkey=Gene;gene=ptsH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26475;old_locus_tag=CFSAN001082_02363
NZ_APAH01000033.1	Protein Homology	CDS	41538	41795	.	-	0	ID=cds-WP_000487600.1;Parent=gene-CFSAN001082_RS26475;Dbxref=GenBank:WP_000487600.1;Name=WP_000487600.1;gbkey=CDS;gene=ptsH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003038086.1;locus_tag=CFSAN001082_RS26475;product=phosphocarrier protein Hpr;protein_id=WP_000487600.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	42179	43150	.	-	.	ID=gene-CFSAN001082_RS26485;Name=cysK;gbkey=Gene;gene=cysK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26485;old_locus_tag=CFSAN001082_02373
NZ_APAH01000033.1	Protein Homology	CDS	42179	43150	.	-	0	ID=cds-WP_000036904.1;Parent=gene-CFSAN001082_RS26485;Dbxref=GenBank:WP_000036904.1;Name=WP_000036904.1;Ontology_term=GO:0006535,GO:0004124;gbkey=CDS;gene=cysK;go_function=cysteine synthase activity|0004124||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000034402.1;locus_tag=CFSAN001082_RS26485;product=cysteine synthase A;protein_id=WP_000036904.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	43523	44284	.	-	.	ID=gene-CFSAN001082_RS26490;Name=cysZ;gbkey=Gene;gene=cysZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26490;old_locus_tag=CFSAN001082_02378
NZ_APAH01000033.1	Protein Homology	CDS	43523	44284	.	-	0	ID=cds-WP_000255006.1;Parent=gene-CFSAN001082_RS26490;Dbxref=GenBank:WP_000255006.1;Name=WP_000255006.1;Ontology_term=GO:0000103,GO:0015116,GO:0005886;gbkey=CDS;gene=cysZ;go_component=plasma membrane|0005886||IEA;go_function=sulfate transmembrane transporter activity|0015116||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461364.1;locus_tag=CFSAN001082_RS26490;product=sulfate transporter CysZ;protein_id=WP_000255006.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	44516	45469	.	+	.	ID=gene-CFSAN001082_RS26495;Name=zipA;gbkey=Gene;gene=zipA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26495;old_locus_tag=CFSAN001082_02383
NZ_APAH01000033.1	Protein Homology	CDS	44516	45469	.	+	0	ID=cds-WP_023253807.1;Parent=gene-CFSAN001082_RS26495;Dbxref=GenBank:WP_023253807.1;Name=WP_023253807.1;Ontology_term=GO:0000917,GO:0005515,GO:0016020;gbkey=CDS;gene=zipA;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA;go_process=division septum assembly|0000917||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461363.1;locus_tag=CFSAN001082_RS26495;product=cell division protein ZipA;protein_id=WP_023253807.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	45541	47556	.	+	.	ID=gene-CFSAN001082_RS26500;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26500;old_locus_tag=CFSAN001082_02388
NZ_APAH01000033.1	Protein Homology	CDS	45541	47556	.	+	0	ID=cds-WP_023253808.1;Parent=gene-CFSAN001082_RS26500;Dbxref=GenBank:WP_023253808.1;Name=WP_023253808.1;Ontology_term=GO:0006260,GO:0006281,GO:0003677,GO:0003911;gbkey=CDS;gene=ligA;go_function=DNA binding|0003677||IEA,DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461362.1;locus_tag=CFSAN001082_RS26500;product=NAD-dependent DNA ligase LigA;protein_id=WP_023253808.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	47558	47776	.	+	.	ID=gene-CFSAN001082_RS26505;Name=CFSAN001082_RS26505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26505;old_locus_tag=CFSAN001082_02393
NZ_APAH01000033.1	Protein Homology	CDS	47558	47776	.	+	0	ID=cds-WP_001519708.1;Parent=gene-CFSAN001082_RS26505;Dbxref=GenBank:WP_001519708.1;Name=WP_001519708.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588464.1;locus_tag=CFSAN001082_RS26505;product=DUF3820 family protein;protein_id=WP_001519708.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	47773	48771	.	-	.	ID=gene-CFSAN001082_RS26510;Name=CFSAN001082_RS26510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26510;old_locus_tag=CFSAN001082_02398
NZ_APAH01000033.1	Protein Homology	CDS	47773	48771	.	-	0	ID=cds-WP_000765580.1;Parent=gene-CFSAN001082_RS26510;Dbxref=GenBank:WP_000765580.1;Name=WP_000765580.1;Ontology_term=GO:0006810,GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461360.2;locus_tag=CFSAN001082_RS26510;product=bile acid:sodium symporter family protein;protein_id=WP_000765580.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	48861	49787	.	+	.	ID=gene-CFSAN001082_RS26515;Name=CFSAN001082_RS26515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26515;old_locus_tag=CFSAN001082_02403
NZ_APAH01000033.1	Protein Homology	CDS	48861	49787	.	+	0	ID=cds-WP_001109831.1;Parent=gene-CFSAN001082_RS26515;Dbxref=GenBank:WP_001109831.1;Name=WP_001109831.1;Ontology_term=GO:0003677,GO:0003700,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461359.1;locus_tag=CFSAN001082_RS26515;product=LysR family transcriptional regulator;protein_id=WP_001109831.1;transl_table=11
NZ_APAH01000033.1	RefSeq	gene	49849	50610	.	-	.	ID=gene-CFSAN001082_RS26520;Name=CFSAN001082_RS26520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26520;old_locus_tag=CFSAN001082_02408
NZ_APAH01000033.1	Protein Homology	CDS	49849	50610	.	-	0	ID=cds-WP_023194379.1;Parent=gene-CFSAN001082_RS26520;Dbxref=GenBank:WP_023194379.1;Name=WP_023194379.1;Ontology_term=GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461358.1;locus_tag=CFSAN001082_RS26520;product=outer membrane protein OmpK;protein_id=WP_023194379.1;transl_table=11
##sequence-region NZ_APAH01000034.1 1 449
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000034.1	RefSeq	region	1	449	.	+	.	ID=NZ_APAH01000034.1:1..449;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000035.1 1 8864
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000035.1	RefSeq	region	1	8864	.	+	.	ID=NZ_APAH01000035.1:1..8864;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000035.1	RefSeq	gene	259	1377	.	+	.	ID=gene-CFSAN001082_RS26525;Name=ompC;gbkey=Gene;gene=ompC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26525;old_locus_tag=CFSAN001082_02413
NZ_APAH01000035.1	Protein Homology	CDS	259	1377	.	+	0	ID=cds-WP_000758336.1;Parent=gene-CFSAN001082_RS26525;Dbxref=GenBank:WP_000758336.1;Name=WP_000758336.1;Ontology_term=GO:0034220,GO:0015288;gbkey=CDS;gene=ompC;go_function=porin activity|0015288||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460490.1;locus_tag=CFSAN001082_RS26525;product=porin OmpC;protein_id=WP_000758336.1;transl_table=11
NZ_APAH01000035.1	RefSeq	gene	1507	1848	.	-	.	ID=gene-CFSAN001082_RS26530;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26530;old_locus_tag=CFSAN001082_02418
NZ_APAH01000035.1	Protein Homology	CDS	1507	1848	.	-	0	ID=cds-WP_000544772.1;Parent=gene-CFSAN001082_RS26530;Dbxref=GenBank:WP_000544772.1;Name=WP_000544772.1;Ontology_term=GO:0036211,GO:0008901,GO:0016151;gbkey=CDS;gene=hypA;go_function=ferredoxin hydrogenase activity|0008901||IEA,nickel cation binding|0016151||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460491.1;locus_tag=CFSAN001082_RS26530;product=hydrogenase maturation nickel metallochaperone HypA;protein_id=WP_000544772.1;transl_table=11
NZ_APAH01000035.1	RefSeq	gene	1861	2748	.	-	.	ID=gene-CFSAN001082_RS26535;Name=CFSAN001082_RS26535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26535;old_locus_tag=CFSAN001082_02423
NZ_APAH01000035.1	Protein Homology	CDS	1861	2748	.	-	0	ID=cds-WP_023253809.1;Parent=gene-CFSAN001082_RS26535;Dbxref=GenBank:WP_023253809.1;Name=WP_023253809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460492.1;locus_tag=CFSAN001082_RS26535;product=dehydrogenase;protein_id=WP_023253809.1;transl_table=11
NZ_APAH01000035.1	RefSeq	gene	2736	3797	.	-	.	ID=gene-CFSAN001082_RS26540;Name=CFSAN001082_RS26540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26540;old_locus_tag=CFSAN001082_02428
NZ_APAH01000035.1	Protein Homology	CDS	2736	3797	.	-	0	ID=cds-WP_023253810.1;Parent=gene-CFSAN001082_RS26540;Dbxref=GenBank:WP_023253810.1;Name=WP_023253810.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460493.1;locus_tag=CFSAN001082_RS26540;product=hydrogenase expression/formation C-terminal domain-containing protein;protein_id=WP_023253810.1;transl_table=11
NZ_APAH01000035.1	RefSeq	gene	3815	4225	.	-	.	ID=gene-CFSAN001082_RS26545;Name=CFSAN001082_RS26545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26545;old_locus_tag=CFSAN001082_02433
NZ_APAH01000035.1	Protein Homology	CDS	3815	4225	.	-	0	ID=cds-WP_000155978.1;Parent=gene-CFSAN001082_RS26545;Dbxref=GenBank:WP_000155978.1;Name=WP_000155978.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460494.1;locus_tag=CFSAN001082_RS26545;product=hydrogenase;protein_id=WP_000155978.1;transl_table=11
NZ_APAH01000035.1	RefSeq	gene	4222	4521	.	-	.	ID=gene-CFSAN001082_RS26550;Name=hypC;gbkey=Gene;gene=hypC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26550;old_locus_tag=CFSAN001082_02438
NZ_APAH01000035.1	Protein Homology	CDS	4222	4521	.	-	0	ID=cds-WP_000334910.1;Parent=gene-CFSAN001082_RS26550;Dbxref=GenBank:WP_000334910.1;Name=WP_000334910.1;Ontology_term=GO:0065003,GO:0016530,GO:0051082;gbkey=CDS;gene=hypC;go_function=metallochaperone activity|0016530||IEA,unfolded protein binding|0051082||IEA;go_process=protein-containing complex assembly|0065003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460495.1;locus_tag=CFSAN001082_RS26550;product=HypC/HybG/HupF family hydrogenase formation chaperone;protein_id=WP_000334910.1;transl_table=11
NZ_APAH01000035.1	RefSeq	gene	4521	5129	.	-	.	ID=gene-CFSAN001082_RS26555;Name=hybD;gbkey=Gene;gene=hybD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26555;old_locus_tag=CFSAN001082_02443
NZ_APAH01000035.1	Protein Homology	CDS	4521	5129	.	-	0	ID=cds-WP_000852663.1;Parent=gene-CFSAN001082_RS26555;Dbxref=GenBank:WP_000852663.1;Name=WP_000852663.1;Ontology_term=GO:0051604,GO:0004190,GO:0046872,GO:0009375;gbkey=CDS;gene=hybD;go_component=ferredoxin hydrogenase complex|0009375||IEA;go_function=aspartic-type endopeptidase activity|0004190||IEA,metal ion binding|0046872||IEA;go_process=protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460496.1;locus_tag=CFSAN001082_RS26555;product=HyaD/HybD family hydrogenase maturation endopeptidase;protein_id=WP_000852663.1;transl_table=11
NZ_APAH01000035.1	RefSeq	gene	5135	5878	.	-	.	ID=gene-CFSAN001082_RS26560;Name=cybH;gbkey=Gene;gene=cybH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26560;old_locus_tag=CFSAN001082_02448
NZ_APAH01000035.1	Protein Homology	CDS	5135	5878	.	-	0	ID=cds-WP_000924456.1;Parent=gene-CFSAN001082_RS26560;Dbxref=GenBank:WP_000924456.1;Name=WP_000924456.1;Ontology_term=GO:0022904,GO:0005506,GO:0009055,GO:0016020;gbkey=CDS;gene=cybH;go_component=membrane|0016020||IEA;go_function=iron ion binding|0005506||IEA,electron transfer activity|0009055||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460497.1;locus_tag=CFSAN001082_RS26560;product=Ni/Fe-hydrogenase%2C b-type cytochrome subunit;protein_id=WP_000924456.1;transl_table=11
NZ_APAH01000035.1	RefSeq	gene	5829	7631	.	-	.	ID=gene-CFSAN001082_RS26565;Name=CFSAN001082_RS26565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26565;old_locus_tag=CFSAN001082_02453
NZ_APAH01000035.1	Protein Homology	CDS	5829	7631	.	-	0	ID=cds-WP_023253811.1;Parent=gene-CFSAN001082_RS26565;Dbxref=GenBank:WP_023253811.1;Name=WP_023253811.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460498.1;locus_tag=CFSAN001082_RS26565;product=nickel-dependent hydrogenase large subunit;protein_id=WP_023253811.1;transl_table=11
NZ_APAH01000035.1	RefSeq	gene	7634	8737	.	-	.	ID=gene-CFSAN001082_RS26570;Name=CFSAN001082_RS26570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26570;old_locus_tag=CFSAN001082_02458
NZ_APAH01000035.1	Protein Homology	CDS	7634	8737	.	-	0	ID=cds-WP_001194448.1;Parent=gene-CFSAN001082_RS26570;Dbxref=GenBank:WP_001194448.1;Name=WP_001194448.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460499.1;locus_tag=CFSAN001082_RS26570;product=hydrogenase small subunit;protein_id=WP_001194448.1;transl_table=11
##sequence-region NZ_APAH01000036.1 1 3219
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000036.1	RefSeq	region	1	3219	.	+	.	ID=NZ_APAH01000036.1:1..3219;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000036.1	RefSeq	gene	58	324	.	-	.	ID=gene-CFSAN001082_RS26575;Name=CFSAN001082_RS26575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26575;old_locus_tag=CFSAN001082_02463
NZ_APAH01000036.1	Protein Homology	CDS	58	324	.	-	0	ID=cds-WP_010989095.1;Parent=gene-CFSAN001082_RS26575;Dbxref=GenBank:WP_010989095.1;Name=WP_010989095.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463167.1;locus_tag=CFSAN001082_RS26575;product=hypothetical protein;protein_id=WP_010989095.1;transl_table=11
NZ_APAH01000036.1	RefSeq	gene	641	1360	.	-	.	ID=gene-CFSAN001082_RS26580;Name=dcuR;gbkey=Gene;gene=dcuR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26580;old_locus_tag=CFSAN001082_02468
NZ_APAH01000036.1	Protein Homology	CDS	641	1360	.	-	0	ID=cds-WP_000611307.1;Parent=gene-CFSAN001082_RS26580;Dbxref=GenBank:WP_000611307.1;Name=WP_000611307.1;Ontology_term=GO:0000160,GO:0003700;gbkey=CDS;gene=dcuR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463168.1;locus_tag=CFSAN001082_RS26580;product=two-component system response regulator DcuR;protein_id=WP_000611307.1;transl_table=11
NZ_APAH01000036.1	RefSeq	gene	1357	2988	.	-	.	ID=gene-CFSAN001082_RS26585;Name=CFSAN001082_RS26585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26585;old_locus_tag=CFSAN001082_02473
NZ_APAH01000036.1	Protein Homology	CDS	1357	2988	.	-	0	ID=cds-WP_000682892.1;Parent=gene-CFSAN001082_RS26585;Dbxref=GenBank:WP_000682892.1;Name=WP_000682892.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463169.1;locus_tag=CFSAN001082_RS26585;product=sensor histidine kinase;protein_id=WP_000682892.1;transl_table=11
##sequence-region NZ_APAH01000037.1 1 4372
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000037.1	RefSeq	region	1	4372	.	+	.	ID=NZ_APAH01000037.1:1..4372;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000037.1	RefSeq	pseudogene	1	81	.	+	.	ID=gene-CFSAN001082_RS48685;Name=CFSAN001082_RS48685;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48685;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000037.1	Protein Homology	CDS	1	81	.	+	0	ID=cds-CFSAN001082_RS48685;Parent=gene-CFSAN001082_RS48685;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_453693.1;locus_tag=CFSAN001082_RS48685;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000037.1	RefSeq	gene	97	1602	.	+	.	ID=gene-CFSAN001082_RS26590;Name=iolA;gbkey=Gene;gene=iolA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26590;old_locus_tag=CFSAN001082_02478
NZ_APAH01000037.1	Protein Homology	CDS	97	1602	.	+	0	ID=cds-WP_023194695.1;Parent=gene-CFSAN001082_RS26590;Dbxref=GenBank:WP_023194695.1;Name=WP_023194695.1;gbkey=CDS;gene=iolA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463282.1;locus_tag=CFSAN001082_RS26590;product=malonate-semialdehyde dehydrogenase IolA;protein_id=WP_023194695.1;transl_table=11
NZ_APAH01000037.1	RefSeq	gene	1627	2436	.	+	.	ID=gene-CFSAN001082_RS26595;Name=iolB;gbkey=Gene;gene=iolB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26595;old_locus_tag=CFSAN001082_02483
NZ_APAH01000037.1	Protein Homology	CDS	1627	2436	.	+	0	ID=cds-WP_000002010.1;Parent=gene-CFSAN001082_RS26595;Dbxref=GenBank:WP_000002010.1;Name=WP_000002010.1;Ontology_term=GO:0019310,GO:0016861;gbkey=CDS;gene=iolB;go_function=intramolecular oxidoreductase activity%2C interconverting aldoses and ketoses|0016861||IEA;go_process=inositol catabolic process|0019310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463281.1;locus_tag=CFSAN001082_RS26595;product=5-deoxy-glucuronate isomerase;protein_id=WP_000002010.1;transl_table=11
NZ_APAH01000037.1	RefSeq	gene	2789	4225	.	-	.	ID=gene-CFSAN001082_RS26600;Name=iolT2;gbkey=Gene;gene=iolT2;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26600;old_locus_tag=CFSAN001082_02488
NZ_APAH01000037.1	Protein Homology	CDS	2789	4225	.	-	0	ID=cds-WP_000083108.1;Parent=gene-CFSAN001082_RS26600;Dbxref=GenBank:WP_000083108.1;Name=WP_000083108.1;gbkey=CDS;gene=iolT2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463280.1;locus_tag=CFSAN001082_RS26600;product=myo-inositol import MFS transporter IolT2;protein_id=WP_000083108.1;transl_table=11
##sequence-region NZ_APAH01000038.1 1 43831
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000038.1	RefSeq	region	1	43831	.	+	.	ID=NZ_APAH01000038.1:1..43831;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000038.1	RefSeq	gene	1	834	.	+	.	ID=gene-CFSAN001082_RS46490;Name=CFSAN001082_RS46490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46490;old_locus_tag=CFSAN001082_02498;partial=true;start_range=.,1
NZ_APAH01000038.1	Protein Homology	CDS	1	834	.	+	0	ID=cds-WP_023253813.1;Parent=gene-CFSAN001082_RS46490;Dbxref=GenBank:WP_023253813.1;Name=WP_023253813.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462919.1;locus_tag=CFSAN001082_RS46490;partial=true;product=YiiG family protein;protein_id=WP_023253813.1;start_range=.,1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	1102	1938	.	-	.	ID=gene-CFSAN001082_RS26610;Name=fdhD;gbkey=Gene;gene=fdhD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26610;old_locus_tag=CFSAN001082_02503
NZ_APAH01000038.1	Protein Homology	CDS	1102	1938	.	-	0	ID=cds-WP_001059739.1;Parent=gene-CFSAN001082_RS26610;Dbxref=GenBank:WP_001059739.1;Name=WP_001059739.1;Ontology_term=GO:0009061,GO:0015942,GO:0016783,GO:0009326;gbkey=CDS;gene=fdhD;go_component=formate dehydrogenase complex|0009326||IEA;go_function=sulfurtransferase activity|0016783||IEA;go_process=anaerobic respiration|0009061||IEA,formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462918.1;locus_tag=CFSAN001082_RS26610;product=formate dehydrogenase accessory sulfurtransferase FdhD;protein_id=WP_001059739.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	2133	5183	.	+	.	ID=gene-CFSAN001082_RS26620;Name=fdnG;gbkey=Gene;gene=fdnG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26620;old_locus_tag=CFSAN001082_02513
NZ_APAH01000038.1	Protein Homology	CDS	2133	5183	.	+	0	ID=cds-WP_139759098.1;Parent=gene-CFSAN001082_RS26620;Dbxref=GenBank:WP_139759098.1;Name=WP_139759098.1;Ontology_term=GO:0015942,GO:0008863,GO:0009055,GO:0043546,GO:0047111,GO:0009326;gbkey=CDS;gene=fdnG;go_component=formate dehydrogenase complex|0009326||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,electron transfer activity|0009055||IEA,molybdopterin cofactor binding|0043546||IEA,formate dehydrogenase (cytochrome-c-553) activity|0047111||IEA;go_process=formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462917.1;locus_tag=CFSAN001082_RS26620;product=formate dehydrogenase-N subunit alpha;protein_id=WP_139759098.1;transl_except=(pos:2718..2720%2Caa:Sec);transl_table=11
NZ_APAH01000038.1	RefSeq	gene	5196	6098	.	+	.	ID=gene-CFSAN001082_RS26625;Name=fdxH;gbkey=Gene;gene=fdxH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26625;old_locus_tag=CFSAN001082_02518
NZ_APAH01000038.1	Protein Homology	CDS	5196	6098	.	+	0	ID=cds-WP_000331361.1;Parent=gene-CFSAN001082_RS26625;Dbxref=GenBank:WP_000331361.1;Name=WP_000331361.1;Ontology_term=GO:0015944,GO:0008863,GO:0051539,GO:0016020;gbkey=CDS;gene=fdxH;go_component=membrane|0016020||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=formate oxidation|0015944||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462916.1;locus_tag=CFSAN001082_RS26625;product=formate dehydrogenase subunit beta;protein_id=WP_000331361.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	6095	6730	.	+	.	ID=gene-CFSAN001082_RS26630;Name=fdoI;gbkey=Gene;gene=fdoI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26630;old_locus_tag=CFSAN001082_02523
NZ_APAH01000038.1	Protein Homology	CDS	6095	6730	.	+	0	ID=cds-WP_023253815.1;Parent=gene-CFSAN001082_RS26630;Dbxref=GenBank:WP_023253815.1;Name=WP_023253815.1;gbkey=CDS;gene=fdoI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462915.1;locus_tag=CFSAN001082_RS26630;product=formate dehydrogenase cytochrome b556 subunit;protein_id=WP_023253815.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	6727	7656	.	+	.	ID=gene-CFSAN001082_RS26635;Name=fdhE;gbkey=Gene;gene=fdhE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26635;old_locus_tag=CFSAN001082_02528
NZ_APAH01000038.1	Protein Homology	CDS	6727	7656	.	+	0	ID=cds-WP_000027730.1;Parent=gene-CFSAN001082_RS26635;Dbxref=GenBank:WP_000027730.1;Name=WP_000027730.1;gbkey=CDS;gene=fdhE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121819.1;locus_tag=CFSAN001082_RS26635;product=formate dehydrogenase accessory protein FdhE;protein_id=WP_000027730.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	7703	7993	.	-	.	ID=gene-CFSAN001082_RS26640;Name=CFSAN001082_RS26640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26640;old_locus_tag=CFSAN001082_02533
NZ_APAH01000038.1	Protein Homology	CDS	7703	7993	.	-	0	ID=cds-WP_000362050.1;Parent=gene-CFSAN001082_RS26640;Dbxref=GenBank:WP_000362050.1;Name=WP_000362050.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011264433.1;locus_tag=CFSAN001082_RS26640;product=helix-turn-helix domain-containing protein;protein_id=WP_000362050.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	7994	8305	.	-	.	ID=gene-CFSAN001082_RS26645;Name=CFSAN001082_RS26645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26645;old_locus_tag=CFSAN001082_02538
NZ_APAH01000038.1	Protein Homology	CDS	7994	8305	.	-	0	ID=cds-WP_001159632.1;Parent=gene-CFSAN001082_RS26645;Dbxref=GenBank:WP_001159632.1;Name=WP_001159632.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001159636.1;locus_tag=CFSAN001082_RS26645;product=cytotoxic translational repressor of toxin-antitoxin stability system;protein_id=WP_001159632.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	8523	9452	.	+	.	ID=gene-CFSAN001082_RS26650;Name=CFSAN001082_RS26650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26650;old_locus_tag=CFSAN001082_02548
NZ_APAH01000038.1	Protein Homology	CDS	8523	9452	.	+	0	ID=cds-WP_023253816.1;Parent=gene-CFSAN001082_RS26650;Dbxref=GenBank:WP_023253816.1;Name=WP_023253816.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462912.1;locus_tag=CFSAN001082_RS26650;product=alpha/beta hydrolase;protein_id=WP_023253816.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	9538	9849	.	+	.	ID=gene-CFSAN001082_RS26655;Name=CFSAN001082_RS26655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26655;old_locus_tag=CFSAN001082_02553
NZ_APAH01000038.1	Protein Homology	CDS	9538	9849	.	+	0	ID=cds-WP_000558166.1;Parent=gene-CFSAN001082_RS26655;Dbxref=GenBank:WP_000558166.1;Name=WP_000558166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462911.1;locus_tag=CFSAN001082_RS26655;product=type II toxin-antitoxin system HigB family toxin;protein_id=WP_000558166.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	9846	10292	.	+	.	ID=gene-CFSAN001082_RS26660;Name=CFSAN001082_RS26660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26660;old_locus_tag=CFSAN001082_02558
NZ_APAH01000038.1	Protein Homology	CDS	9846	10292	.	+	0	ID=cds-WP_001259011.1;Parent=gene-CFSAN001082_RS26660;Dbxref=GenBank:WP_001259011.1;Name=WP_001259011.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462910.3;locus_tag=CFSAN001082_RS26660;product=helix-turn-helix domain-containing protein;protein_id=WP_001259011.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	10307	11248	.	-	.	ID=gene-CFSAN001082_RS26665;Name=fabY;gbkey=Gene;gene=fabY;gene_biotype=protein_coding;gene_synonym=yiiD;locus_tag=CFSAN001082_RS26665;old_locus_tag=CFSAN001082_02563
NZ_APAH01000038.1	Protein Homology	CDS	10307	11248	.	-	0	ID=cds-WP_001518251.1;Parent=gene-CFSAN001082_RS26665;Dbxref=GenBank:WP_001518251.1;Name=WP_001518251.1;gbkey=CDS;gene=fabY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001666856.1;locus_tag=CFSAN001082_RS26665;product=fatty acid biosynthesis protein FabY;protein_id=WP_001518251.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	11293	11730	.	-	.	ID=gene-CFSAN001082_RS26670;Name=dtd;gbkey=Gene;gene=dtd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26670;old_locus_tag=CFSAN001082_02568
NZ_APAH01000038.1	Protein Homology	CDS	11293	11730	.	-	0	ID=cds-WP_000560974.1;Parent=gene-CFSAN001082_RS26670;Dbxref=GenBank:WP_000560974.1;Name=WP_000560974.1;Ontology_term=GO:0008152,GO:0004045;gbkey=CDS;gene=dtd;go_function=aminoacyl-tRNA hydrolase activity|0004045||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000560980.1;locus_tag=CFSAN001082_RS26670;product=D-aminoacyl-tRNA deacylase;protein_id=WP_000560974.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	11727	12599	.	-	.	ID=gene-CFSAN001082_RS26675;Name=CFSAN001082_RS26675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26675;old_locus_tag=CFSAN001082_02573
NZ_APAH01000038.1	Protein Homology	CDS	11727	12599	.	-	0	ID=cds-WP_000921423.1;Parent=gene-CFSAN001082_RS26675;Dbxref=GenBank:WP_000921423.1;Name=WP_000921423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462907.1;locus_tag=CFSAN001082_RS26675;product=virulence factor BrkB family protein;protein_id=WP_000921423.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	12593	13192	.	-	.	ID=gene-CFSAN001082_RS26680;Name=yihX;gbkey=Gene;gene=yihX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26680;old_locus_tag=CFSAN001082_02578
NZ_APAH01000038.1	Protein Homology	CDS	12593	13192	.	-	0	ID=cds-WP_000965695.1;Parent=gene-CFSAN001082_RS26680;Dbxref=GenBank:WP_000965695.1;Name=WP_000965695.1;gbkey=CDS;gene=yihX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462906.1;locus_tag=CFSAN001082_RS26680;product=glucose-1-phosphatase;protein_id=WP_000965695.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	13383	14186	.	-	.	ID=gene-CFSAN001082_RS26685;Name=CFSAN001082_RS26685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26685;old_locus_tag=CFSAN001082_02583
NZ_APAH01000038.1	Protein Homology	CDS	13383	14186	.	-	0	ID=cds-WP_000059693.1;Parent=gene-CFSAN001082_RS26685;Dbxref=GenBank:WP_000059693.1;Name=WP_000059693.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462905.1;locus_tag=CFSAN001082_RS26685;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_000059693.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	14220	15116	.	-	.	ID=gene-CFSAN001082_RS26690;Name=CFSAN001082_RS26690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26690;old_locus_tag=CFSAN001082_02588
NZ_APAH01000038.1	Protein Homology	CDS	14220	15116	.	-	0	ID=cds-WP_001520529.1;Parent=gene-CFSAN001082_RS26690;Dbxref=GenBank:WP_001520529.1;Name=WP_001520529.1;Ontology_term=GO:0005975,GO:0005524,GO:0016301;gbkey=CDS;go_function=ATP binding|0005524||IEA,kinase activity|0016301||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462904.3;locus_tag=CFSAN001082_RS26690;product=sugar kinase;protein_id=WP_001520529.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	15281	16177	.	+	.	ID=gene-CFSAN001082_RS26695;Name=yihU;gbkey=Gene;gene=yihU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26695;old_locus_tag=CFSAN001082_02593
NZ_APAH01000038.1	Protein Homology	CDS	15281	16177	.	+	0	ID=cds-WP_000268248.1;Parent=gene-CFSAN001082_RS26695;Dbxref=GenBank:WP_000268248.1;Name=WP_000268248.1;Ontology_term=GO:0016491;gbkey=CDS;gene=yihU;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462903.1;locus_tag=CFSAN001082_RS26695;product=sulfolactaldehyde 3-reductase;protein_id=WP_000268248.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	16200	17078	.	+	.	ID=gene-CFSAN001082_RS26700;Name=yihT;gbkey=Gene;gene=yihT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26700;old_locus_tag=CFSAN001082_02598
NZ_APAH01000038.1	Protein Homology	CDS	16200	17078	.	+	0	ID=cds-WP_001067413.1;Parent=gene-CFSAN001082_RS26700;Dbxref=GenBank:WP_001067413.1;Name=WP_001067413.1;gbkey=CDS;gene=yihT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462902.1;locus_tag=CFSAN001082_RS26700;product=sulfofructosephosphate aldolase;protein_id=WP_001067413.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	17094	18335	.	+	.	ID=gene-CFSAN001082_RS26705;Name=yihS;gbkey=Gene;gene=yihS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26705;old_locus_tag=CFSAN001082_02603
NZ_APAH01000038.1	Protein Homology	CDS	17094	18335	.	+	0	ID=cds-WP_000870942.1;Parent=gene-CFSAN001082_RS26705;Dbxref=GenBank:WP_000870942.1;Name=WP_000870942.1;gbkey=CDS;gene=yihS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462901.1;locus_tag=CFSAN001082_RS26705;product=sulfoquinovose isomerase;protein_id=WP_000870942.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	18339	19196	.	+	.	ID=gene-CFSAN001082_RS26710;Name=CFSAN001082_RS26710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26710;old_locus_tag=CFSAN001082_02608
NZ_APAH01000038.1	Protein Homology	CDS	18339	19196	.	+	0	ID=cds-WP_023166960.1;Parent=gene-CFSAN001082_RS26710;Dbxref=GenBank:WP_023166960.1;Name=WP_023166960.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462900.3;locus_tag=CFSAN001082_RS26710;product=aldose-1-epimerase;protein_id=WP_023166960.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	19240	21276	.	+	.	ID=gene-CFSAN001082_RS26715;Name=CFSAN001082_RS26715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26715;old_locus_tag=CFSAN001082_02613
NZ_APAH01000038.1	Protein Homology	CDS	19240	21276	.	+	0	ID=cds-WP_023181419.1;Parent=gene-CFSAN001082_RS26715;Dbxref=GenBank:WP_023181419.1;Name=WP_023181419.1;Ontology_term=GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462899.1;locus_tag=CFSAN001082_RS26715;product=alpha-glucosidase;protein_id=WP_023181419.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	21322	22704	.	+	.	ID=gene-CFSAN001082_RS26720;Name=CFSAN001082_RS26720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26720;old_locus_tag=CFSAN001082_02618
NZ_APAH01000038.1	Protein Homology	CDS	21322	22704	.	+	0	ID=cds-WP_000084250.1;Parent=gene-CFSAN001082_RS26720;Dbxref=GenBank:WP_000084250.1;Name=WP_000084250.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462898.1;locus_tag=CFSAN001082_RS26720;product=MFS transporter;protein_id=WP_000084250.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	22750	24171	.	+	.	ID=gene-CFSAN001082_RS26725;Name=CFSAN001082_RS26725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26725;old_locus_tag=CFSAN001082_02623
NZ_APAH01000038.1	Protein Homology	CDS	22750	24171	.	+	0	ID=cds-WP_000064891.1;Parent=gene-CFSAN001082_RS26725;Dbxref=GenBank:WP_000064891.1;Name=WP_000064891.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462897.1;locus_tag=CFSAN001082_RS26725;product=MFS transporter;protein_id=WP_000064891.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	24239	24931	.	+	.	ID=gene-CFSAN001082_RS26730;Name=ompL;gbkey=Gene;gene=ompL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26730;old_locus_tag=CFSAN001082_02628
NZ_APAH01000038.1	Protein Homology	CDS	24239	24931	.	+	0	ID=cds-WP_000838828.1;Parent=gene-CFSAN001082_RS26730;Dbxref=GenBank:WP_000838828.1;Name=WP_000838828.1;gbkey=CDS;gene=ompL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462896.1;locus_tag=CFSAN001082_RS26730;product=porin OmpL;protein_id=WP_000838828.1;transl_table=11
NZ_APAH01000038.1	RefSeq	pseudogene	25088	25194	.	+	.	ID=gene-CFSAN001082_RS48510;Name=CFSAN001082_RS48510;end_range=25194,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48510;partial=true;pseudo=true
NZ_APAH01000038.1	Protein Homology	CDS	25088	25194	.	+	0	ID=cds-CFSAN001082_RS48510;Parent=gene-CFSAN001082_RS48510;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=25194,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462895.1;locus_tag=CFSAN001082_RS48510;partial=true;product=STM4015 family protein;pseudo=true;transl_table=11
NZ_APAH01000038.1	RefSeq	pseudogene	25195	25266	.	+	.	ID=gene-CFSAN001082_RS48690;Name=CFSAN001082_RS48690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48690;partial=true;pseudo=true;start_range=.,25195
NZ_APAH01000038.1	Protein Homology	CDS	25195	25266	.	+	0	ID=cds-CFSAN001082_RS48690;Parent=gene-CFSAN001082_RS48690;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462890.1;locus_tag=CFSAN001082_RS48690;partial=true;product=hypothetical protein;pseudo=true;start_range=.,25195;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	25321	27144	.	-	.	ID=gene-CFSAN001082_RS26735;Name=typA;gbkey=Gene;gene=typA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26735;old_locus_tag=CFSAN001082_02638
NZ_APAH01000038.1	Protein Homology	CDS	25321	27144	.	-	0	ID=cds-WP_000572060.1;Parent=gene-CFSAN001082_RS26735;Dbxref=GenBank:WP_000572060.1;Name=WP_000572060.1;gbkey=CDS;gene=typA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462889.1;locus_tag=CFSAN001082_RS26735;product=ribosome-dependent GTPase TypA;protein_id=WP_000572060.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	27520	28929	.	+	.	ID=gene-CFSAN001082_RS26740;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26740;old_locus_tag=CFSAN001082_02643
NZ_APAH01000038.1	Protein Homology	CDS	27520	28929	.	+	0	ID=cds-WP_001271699.1;Parent=gene-CFSAN001082_RS26740;Dbxref=GenBank:WP_001271699.1;Name=WP_001271699.1;Ontology_term=GO:0006542,GO:0008152,GO:0004356;gbkey=CDS;gene=glnA;go_function=glutamine synthetase activity|0004356||IEA;go_process=glutamine biosynthetic process|0006542||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020233234.1;locus_tag=CFSAN001082_RS26740;product=glutamate--ammonia ligase;protein_id=WP_001271699.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	29204	30253	.	+	.	ID=gene-CFSAN001082_RS26745;Name=glnL;gbkey=Gene;gene=glnL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26745;old_locus_tag=CFSAN001082_02648
NZ_APAH01000038.1	Protein Homology	CDS	29204	30253	.	+	0	ID=cds-WP_000146192.1;Parent=gene-CFSAN001082_RS26745;Dbxref=GenBank:WP_000146192.1;Name=WP_000146192.1;Ontology_term=GO:0006355,GO:0007165,GO:0016310,GO:0000155;gbkey=CDS;gene=glnL;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462886.1;locus_tag=CFSAN001082_RS26745;product=nitrogen regulation protein NR(II);protein_id=WP_000146192.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	30262	31671	.	+	.	ID=gene-CFSAN001082_RS26750;Name=glnG;gbkey=Gene;gene=glnG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26750;old_locus_tag=CFSAN001082_02653
NZ_APAH01000038.1	Protein Homology	CDS	30262	31671	.	+	0	ID=cds-WP_001188782.1;Parent=gene-CFSAN001082_RS26750;Dbxref=GenBank:WP_001188782.1;Name=WP_001188782.1;Ontology_term=GO:0006355,GO:0043565;gbkey=CDS;gene=glnG;go_function=sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133942.1;locus_tag=CFSAN001082_RS26750;product=nitrogen regulation protein NR(I);protein_id=WP_001188782.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	31784	31894	.	+	.	ID=gene-CFSAN001082_RS48130;Name=CFSAN001082_RS48130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48130
NZ_APAH01000038.1	Protein Homology	CDS	31784	31894	.	+	0	ID=cds-WP_001578131.1;Parent=gene-CFSAN001082_RS48130;Dbxref=GenBank:WP_001578131.1;Name=WP_001578131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791260.1;locus_tag=CFSAN001082_RS48130;product=YshB family small membrane protein;protein_id=WP_001578131.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	31984	33357	.	-	.	ID=gene-CFSAN001082_RS26755;Name=hemN;gbkey=Gene;gene=hemN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26755;old_locus_tag=CFSAN001082_02658
NZ_APAH01000038.1	Protein Homology	CDS	31984	33357	.	-	0	ID=cds-WP_000003520.1;Parent=gene-CFSAN001082_RS26755;Dbxref=GenBank:WP_000003520.1;Name=WP_000003520.1;Ontology_term=GO:0006779,GO:0004109,GO:0005737;gbkey=CDS;gene=hemN;go_component=cytoplasm|0005737||IEA;go_function=coproporphyrinogen oxidase activity|0004109||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462884.1;locus_tag=CFSAN001082_RS26755;product=oxygen-independent coproporphyrinogen III oxidase;protein_id=WP_000003520.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	33546	34061	.	-	.	ID=gene-CFSAN001082_RS26760;Name=yihI;gbkey=Gene;gene=yihI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26760;old_locus_tag=CFSAN001082_02663
NZ_APAH01000038.1	Protein Homology	CDS	33546	34061	.	-	0	ID=cds-WP_000743292.1;Parent=gene-CFSAN001082_RS26760;Dbxref=GenBank:WP_000743292.1;Name=WP_000743292.1;gbkey=CDS;gene=yihI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462883.1;locus_tag=CFSAN001082_RS26760;product=Der GTPase-activating protein YihI;protein_id=WP_000743292.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	34180	34404	.	-	.	ID=gene-CFSAN001082_RS26765;Name=CFSAN001082_RS26765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26765;old_locus_tag=CFSAN001082_02668
NZ_APAH01000038.1	Protein Homology	CDS	34180	34404	.	-	0	ID=cds-WP_001541209.1;Parent=gene-CFSAN001082_RS26765;Dbxref=GenBank:WP_001541209.1;Name=WP_001541209.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462882.1;locus_tag=CFSAN001082_RS26765;product=hypothetical protein;protein_id=WP_001541209.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	34644	35276	.	+	.	ID=gene-CFSAN001082_RS26770;Name=yihA;gbkey=Gene;gene=yihA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26770;old_locus_tag=CFSAN001082_02673
NZ_APAH01000038.1	Protein Homology	CDS	34644	35276	.	+	0	ID=cds-WP_000183327.1;Parent=gene-CFSAN001082_RS26770;Dbxref=GenBank:WP_000183327.1;Name=WP_000183327.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=yihA;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462881.1;locus_tag=CFSAN001082_RS26770;product=ribosome biogenesis GTP-binding protein YihA/YsxC;protein_id=WP_000183327.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	35611	38397	.	-	.	ID=gene-CFSAN001082_RS26775;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26775;old_locus_tag=CFSAN001082_02678
NZ_APAH01000038.1	Protein Homology	CDS	35611	38397	.	-	0	ID=cds-WP_023253817.1;Parent=gene-CFSAN001082_RS26775;Dbxref=GenBank:WP_023253817.1;Name=WP_023253817.1;Ontology_term=GO:0006261,GO:0003676,GO:0003677,GO:0003887,GO:0008408;gbkey=CDS;gene=polA;go_function=nucleic acid binding|0003676||IEA,DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA-templated DNA replication|0006261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462879.1;locus_tag=CFSAN001082_RS26775;product=DNA polymerase I;protein_id=WP_023253817.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	38785	39693	.	+	.	ID=gene-CFSAN001082_RS26780;Name=CFSAN001082_RS26780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26780;old_locus_tag=CFSAN001082_02683
NZ_APAH01000038.1	Protein Homology	CDS	38785	39693	.	+	0	ID=cds-WP_000196894.1;Parent=gene-CFSAN001082_RS26780;Dbxref=GenBank:WP_000196894.1;Name=WP_000196894.1;Ontology_term=GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462878.1;locus_tag=CFSAN001082_RS26780;product=acyltransferase;protein_id=WP_000196894.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	39706	40329	.	-	.	ID=gene-CFSAN001082_RS26785;Name=dsbA;gbkey=Gene;gene=dsbA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26785;old_locus_tag=CFSAN001082_02688
NZ_APAH01000038.1	Protein Homology	CDS	39706	40329	.	-	0	ID=cds-WP_000725364.1;Parent=gene-CFSAN001082_RS26785;Dbxref=GenBank:WP_000725364.1;Name=WP_000725364.1;Ontology_term=GO:0016491;gbkey=CDS;gene=dsbA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462877.1;locus_tag=CFSAN001082_RS26785;product=thiol:disulfide interchange protein DsbA;protein_id=WP_000725364.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	40346	41332	.	-	.	ID=gene-CFSAN001082_RS26790;Name=CFSAN001082_RS26790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26790;old_locus_tag=CFSAN001082_02693
NZ_APAH01000038.1	Protein Homology	CDS	40346	41332	.	-	0	ID=cds-WP_001583726.1;Parent=gene-CFSAN001082_RS26790;Dbxref=GenBank:WP_001583726.1;Name=WP_001583726.1;Ontology_term=GO:0006468,GO:0004674;gbkey=CDS;go_function=protein serine/threonine kinase activity|0004674||IEA;go_process=protein phosphorylation|0006468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462876.1;locus_tag=CFSAN001082_RS26790;product=serine/threonine protein kinase;protein_id=WP_001583726.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	41409	41678	.	-	.	ID=gene-CFSAN001082_RS26795;Name=CFSAN001082_RS26795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26795;old_locus_tag=CFSAN001082_02698
NZ_APAH01000038.1	Protein Homology	CDS	41409	41678	.	-	0	ID=cds-WP_000649858.1;Parent=gene-CFSAN001082_RS26795;Dbxref=GenBank:WP_000649858.1;Name=WP_000649858.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966571.1;locus_tag=CFSAN001082_RS26795;product=YihD family protein;protein_id=WP_000649858.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	41748	42332	.	+	.	ID=gene-CFSAN001082_RS26800;Name=mobA;gbkey=Gene;gene=mobA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26800;old_locus_tag=CFSAN001082_02703
NZ_APAH01000038.1	Protein Homology	CDS	41748	42332	.	+	0	ID=cds-WP_001046883.1;Parent=gene-CFSAN001082_RS26800;Dbxref=GenBank:WP_001046883.1;Name=WP_001046883.1;Ontology_term=GO:0006777,GO:0003824;gbkey=CDS;gene=mobA;go_function=catalytic activity|0003824||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462874.1;locus_tag=CFSAN001082_RS26800;product=molybdenum cofactor guanylyltransferase MobA;protein_id=WP_001046883.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	42329	42844	.	+	.	ID=gene-CFSAN001082_RS26805;Name=mobB;gbkey=Gene;gene=mobB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26805;old_locus_tag=CFSAN001082_02708
NZ_APAH01000038.1	Protein Homology	CDS	42329	42844	.	+	0	ID=cds-WP_010989085.1;Parent=gene-CFSAN001082_RS26805;Dbxref=GenBank:WP_010989085.1;Name=WP_010989085.1;Ontology_term=GO:0006777,GO:0005525;gbkey=CDS;gene=mobB;go_function=GTP binding|0005525||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462873.1;locus_tag=CFSAN001082_RS26805;product=molybdopterin-guanine dinucleotide biosynthesis protein MobB;protein_id=WP_010989085.1;transl_table=11
NZ_APAH01000038.1	RefSeq	gene	42931	43046	.	-	.	ID=gene-CFSAN001082_RS26810;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=CFSAN001082_RS26810;old_locus_tag=CFSAN001082_r02715
NZ_APAH01000038.1	cmsearch	rRNA	42931	43046	.	-	.	ID=rna-CFSAN001082_RS26810;Parent=gene-CFSAN001082_RS26810;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS26810;product=5S ribosomal RNA
NZ_APAH01000038.1	cmsearch	exon	42931	43046	.	-	.	ID=exon-CFSAN001082_RS26810-1;Parent=rna-CFSAN001082_RS26810;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS26810;product=5S ribosomal RNA
NZ_APAH01000038.1	RefSeq	gene	43141	43831	.	-	.	ID=gene-CFSAN001082_RS26815;Name=CFSAN001082_RS26815;end_range=43831,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS26815;old_locus_tag=CFSAN001082_r02717;partial=true
NZ_APAH01000038.1	cmsearch	rRNA	43141	43831	.	-	.	ID=rna-CFSAN001082_RS26815;Parent=gene-CFSAN001082_RS26815;Dbxref=RFAM:RF02541;end_range=43831,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS26815;partial=true;product=23S ribosomal RNA
NZ_APAH01000038.1	cmsearch	exon	43141	43831	.	-	.	ID=exon-CFSAN001082_RS26815-1;Parent=rna-CFSAN001082_RS26815;Dbxref=RFAM:RF02541;end_range=43831,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS26815;partial=true;product=23S ribosomal RNA
##sequence-region NZ_APAH01000039.1 1 323
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000039.1	RefSeq	region	1	323	.	+	.	ID=NZ_APAH01000039.1:1..323;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000039.1	RefSeq	pseudogene	1	323	.	+	.	ID=gene-CFSAN001082_RS46505;Name=CFSAN001082_RS46505;end_range=323,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46505;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000039.1	Protein Homology	CDS	1	323	.	+	2	ID=cds-CFSAN001082_RS46505;Parent=gene-CFSAN001082_RS46505;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=323,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460513.1;locus_tag=CFSAN001082_RS46505;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000040.1 1 248
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000040.1	RefSeq	region	1	248	.	+	.	ID=NZ_APAH01000040.1:1..248;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000040.1	RefSeq	gene	1	213	.	+	.	ID=gene-CFSAN001082_RS26820;Name=CFSAN001082_RS26820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26820;old_locus_tag=CFSAN001082_02717;partial=true;start_range=.,1
NZ_APAH01000040.1	Protein Homology	CDS	1	213	.	+	0	ID=cds-WP_031612617.1;Parent=gene-CFSAN001082_RS26820;Dbxref=GenBank:WP_031612617.1;Name=WP_031612617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459746.1;locus_tag=CFSAN001082_RS26820;partial=true;product=oxaloacetate decarboxylase subunit gamma;protein_id=WP_031612617.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000041.1 1 2461
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000041.1	RefSeq	region	1	2461	.	+	.	ID=NZ_APAH01000041.1:1..2461;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000041.1	RefSeq	gene	284	745	.	+	.	ID=gene-CFSAN001082_RS26830;Name=CFSAN001082_RS26830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26830;old_locus_tag=CFSAN001082_02727
NZ_APAH01000041.1	Protein Homology	CDS	284	745	.	+	0	ID=cds-WP_000762342.1;Parent=gene-CFSAN001082_RS26830;Dbxref=GenBank:WP_000762342.1;Name=WP_000762342.1;Ontology_term=GO:0043565;gbkey=CDS;go_function=sequence-specific DNA binding|0043565||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459976.1;locus_tag=CFSAN001082_RS26830;product=Lrp/AsnC family transcriptional regulator;protein_id=WP_000762342.1;transl_table=11
NZ_APAH01000041.1	RefSeq	gene	946	2346	.	+	.	ID=gene-CFSAN001082_RS26835;Name=asnS;gbkey=Gene;gene=asnS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26835;old_locus_tag=CFSAN001082_02732
NZ_APAH01000041.1	Protein Homology	CDS	946	2346	.	+	0	ID=cds-WP_023253820.1;Parent=gene-CFSAN001082_RS26835;Dbxref=GenBank:WP_023253820.1;Name=WP_023253820.1;Ontology_term=GO:0006421,GO:0004816,GO:0005524;gbkey=CDS;gene=asnS;go_function=asparagine-tRNA ligase activity|0004816||IEA,ATP binding|0005524||IEA;go_process=asparaginyl-tRNA aminoacylation|0006421||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123540.1;locus_tag=CFSAN001082_RS26835;product=asparagine--tRNA ligase;protein_id=WP_023253820.1;transl_table=11
##sequence-region NZ_APAH01000042.1 1 3308
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000042.1	RefSeq	region	1	3308	.	+	.	ID=NZ_APAH01000042.1:1..3308;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000042.1	RefSeq	gene	1	1115	.	+	.	ID=gene-CFSAN001082_RS26840;Name=CFSAN001082_RS26840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26840;old_locus_tag=CFSAN001082_02737;partial=true;start_range=.,1
NZ_APAH01000042.1	Protein Homology	CDS	1	1115	.	+	2	ID=cds-WP_024150240.1;Parent=gene-CFSAN001082_RS26840;Dbxref=GenBank:WP_024150240.1;Name=WP_024150240.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461143.1;locus_tag=CFSAN001082_RS26840;partial=true;product=MFS transporter;protein_id=WP_024150240.1;start_range=.,1;transl_table=11
NZ_APAH01000042.1	RefSeq	pseudogene	1159	3150	.	-	.	ID=gene-CFSAN001082_RS26845;Name=cirA;gbkey=Gene;gene=cirA;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS26845;old_locus_tag=CFSAN001082_02742;pseudo=true
NZ_APAH01000042.1	Protein Homology	CDS	1159	3150	.	-	0	ID=cds-CFSAN001082_RS26845;Parent=gene-CFSAN001082_RS26845;Note=internal stop;gbkey=CDS;gene=cirA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461144.1;locus_tag=CFSAN001082_RS26845;product=catecholate siderophore receptor CirA;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000043.1 1 38172
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000043.1	RefSeq	region	1	38172	.	+	.	ID=NZ_APAH01000043.1:1..38172;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000043.1	RefSeq	gene	411	2825	.	-	.	ID=gene-CFSAN001082_RS26855;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26855;old_locus_tag=CFSAN001082_02752
NZ_APAH01000043.1	Protein Homology	CDS	411	2825	.	-	0	ID=cds-WP_000072047.1;Parent=gene-CFSAN001082_RS26855;Dbxref=GenBank:WP_000072047.1;Name=WP_000072047.1;Ontology_term=GO:0006265,GO:0003677,GO:0003918,GO:0005524,GO:0005694;gbkey=CDS;gene=gyrB;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121480.1;locus_tag=CFSAN001082_RS26855;product=DNA topoisomerase (ATP-hydrolyzing) subunit B;protein_id=WP_000072047.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	2854	3927	.	-	.	ID=gene-CFSAN001082_RS26860;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26860;old_locus_tag=CFSAN001082_02757
NZ_APAH01000043.1	Protein Homology	CDS	2854	3927	.	-	0	ID=cds-WP_000060081.1;Parent=gene-CFSAN001082_RS26860;Dbxref=GenBank:WP_000060081.1;Name=WP_000060081.1;Note=All proteins in this family for which functions are known are DNA-binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair.;Ontology_term=GO:0006260,GO:0006281,GO:0006310,GO:0009432,GO:0003697,GO:0005524;gbkey=CDS;gene=recF;go_function=single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA,DNA recombination|0006310||IEA,SOS response|0009432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121479.1;locus_tag=CFSAN001082_RS26860;product=DNA replication/repair protein RecF;protein_id=WP_000060081.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	4075	5175	.	-	.	ID=gene-CFSAN001082_RS26865;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26865;old_locus_tag=CFSAN001082_02762
NZ_APAH01000043.1	Protein Homology	CDS	4075	5175	.	-	0	ID=cds-WP_000673474.1;Parent=gene-CFSAN001082_RS26865;Dbxref=GenBank:WP_000673474.1;Name=WP_000673474.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0009360;gbkey=CDS;gene=dnaN;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006177590.1;locus_tag=CFSAN001082_RS26865;product=DNA polymerase III subunit beta;protein_id=WP_000673474.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	5180	6580	.	-	.	ID=gene-CFSAN001082_RS26870;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26870;old_locus_tag=CFSAN001082_02767
NZ_APAH01000043.1	Protein Homology	CDS	5180	6580	.	-	0	ID=cds-WP_000059093.1;Parent=gene-CFSAN001082_RS26870;Dbxref=GenBank:WP_000059093.1;Name=WP_000059093.1;Ontology_term=GO:0006270,GO:0006275,GO:0003677,GO:0003688,GO:0005524;gbkey=CDS;gene=dnaA;go_function=DNA binding|0003677||IEA,DNA replication origin binding|0003688||IEA,ATP binding|0005524||IEA;go_process=DNA replication initiation|0006270||IEA,regulation of DNA replication|0006275||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462738.1;locus_tag=CFSAN001082_RS26870;product=chromosomal replication initiator protein DnaA;protein_id=WP_000059093.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	6920	7012	.	+	.	ID=gene-CFSAN001082_RS49145;Name=CFSAN001082_RS49145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49145
NZ_APAH01000043.1	Protein Homology	CDS	6920	7012	.	+	0	ID=cds-WP_418896015.1;Parent=gene-CFSAN001082_RS49145;Dbxref=GenBank:WP_418896015.1;Name=WP_418896015.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF048187.1;locus_tag=CFSAN001082_RS49145;product=hypothetical protein;protein_id=WP_418896015.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	7241	7381	.	+	.	ID=gene-CFSAN001082_RS0122875;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0122875
NZ_APAH01000043.1	Protein Homology	CDS	7241	7381	.	+	0	ID=cds-WP_000831330.1;Parent=gene-CFSAN001082_RS0122875;Dbxref=GenBank:WP_000831330.1;Name=WP_000831330.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmH;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001686914.1;locus_tag=CFSAN001082_RS0122875;product=50S ribosomal protein L34;protein_id=WP_000831330.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	7398	7757	.	+	.	ID=gene-CFSAN001082_RS26875;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26875;old_locus_tag=CFSAN001082_02777
NZ_APAH01000043.1	Protein Homology	CDS	7398	7757	.	+	0	ID=cds-WP_000239725.1;Parent=gene-CFSAN001082_RS26875;Dbxref=GenBank:WP_000239725.1;Name=WP_000239725.1;Ontology_term=GO:0008033,GO:0000049,GO:0004526;gbkey=CDS;gene=rnpA;go_function=tRNA binding|0000049||IEA,ribonuclease P activity|0004526||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014172301.1;locus_tag=CFSAN001082_RS26875;product=ribonuclease P protein component;protein_id=WP_000239725.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	7721	7978	.	+	.	ID=gene-CFSAN001082_RS26880;Name=yidD;gbkey=Gene;gene=yidD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26880;old_locus_tag=CFSAN001082_02782
NZ_APAH01000043.1	Protein Homology	CDS	7721	7978	.	+	0	ID=cds-WP_001307474.1;Parent=gene-CFSAN001082_RS26880;Dbxref=GenBank:WP_001307474.1;Name=WP_001307474.1;gbkey=CDS;gene=yidD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462741.1;locus_tag=CFSAN001082_RS26880;product=membrane protein insertion efficiency factor YidD;protein_id=WP_001307474.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	7981	9627	.	+	.	ID=gene-CFSAN001082_RS26885;Name=yidC;gbkey=Gene;gene=yidC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26885;old_locus_tag=CFSAN001082_02787
NZ_APAH01000043.1	Protein Homology	CDS	7981	9627	.	+	0	ID=cds-WP_000378278.1;Parent=gene-CFSAN001082_RS26885;Dbxref=GenBank:WP_000378278.1;Name=WP_000378278.1;Ontology_term=GO:0032977,GO:0016020;gbkey=CDS;gene=yidC;go_component=membrane|0016020||IEA;go_function=membrane insertase activity|0032977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462742.1;locus_tag=CFSAN001082_RS26885;product=membrane protein insertase YidC;protein_id=WP_000378278.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	9768	11132	.	+	.	ID=gene-CFSAN001082_RS26890;Name=mnmE;gbkey=Gene;gene=mnmE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26890;old_locus_tag=CFSAN001082_02792
NZ_APAH01000043.1	Protein Homology	CDS	9768	11132	.	+	0	ID=cds-WP_000019081.1;Parent=gene-CFSAN001082_RS26890;Dbxref=GenBank:WP_000019081.1;Name=WP_000019081.1;Ontology_term=GO:0006400,GO:0003924,GO:0005515,GO:0005525;gbkey=CDS;gene=mnmE;go_function=GTPase activity|0003924||IEA,protein binding|0005515||IEA,GTP binding|0005525||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462743.1;locus_tag=CFSAN001082_RS26890;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE;protein_id=WP_000019081.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	11315	12502	.	+	.	ID=gene-CFSAN001082_RS26895;Name=CFSAN001082_RS26895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26895;old_locus_tag=CFSAN001082_02797
NZ_APAH01000043.1	Protein Homology	CDS	11315	12502	.	+	0	ID=cds-WP_023253824.1;Parent=gene-CFSAN001082_RS26895;Dbxref=GenBank:WP_023253824.1;Name=WP_023253824.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001608974.1;locus_tag=CFSAN001082_RS26895;product=MFS transporter;protein_id=WP_023253824.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	12471	13430	.	+	.	ID=gene-CFSAN001082_RS26900;Name=yidZ;gbkey=Gene;gene=yidZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26900;old_locus_tag=CFSAN001082_02802
NZ_APAH01000043.1	Protein Homology	CDS	12471	13430	.	+	0	ID=cds-WP_000749365.1;Parent=gene-CFSAN001082_RS26900;Dbxref=GenBank:WP_000749365.1;Name=WP_000749365.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yidZ;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462747.1;locus_tag=CFSAN001082_RS26900;product=HTH-type transcriptional regulator YidZ;protein_id=WP_000749365.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	13588	14343	.	+	.	ID=gene-CFSAN001082_RS26905;Name=CFSAN001082_RS26905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26905;old_locus_tag=CFSAN001082_02807
NZ_APAH01000043.1	Protein Homology	CDS	13588	14343	.	+	0	ID=cds-WP_000190678.1;Parent=gene-CFSAN001082_RS26905;Dbxref=GenBank:WP_000190678.1;Name=WP_000190678.1;Ontology_term=GO:0008897;gbkey=CDS;go_function=holo-[acyl-carrier-protein] synthase activity|0008897||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462748.1;locus_tag=CFSAN001082_RS26905;product=4'-phosphopantetheinyl transferase family protein;protein_id=WP_000190678.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	14343	14927	.	+	.	ID=gene-CFSAN001082_RS26910;Name=CFSAN001082_RS26910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26910;old_locus_tag=CFSAN001082_02812
NZ_APAH01000043.1	Protein Homology	CDS	14343	14927	.	+	0	ID=cds-WP_001575173.1;Parent=gene-CFSAN001082_RS26910;Dbxref=GenBank:WP_001575173.1;Name=WP_001575173.1;Ontology_term=GO:0008752,GO:0008753,GO:0010181,GO:0016491,GO:0050136,GO:0052873;gbkey=CDS;go_function=FMN reductase [NAD(P)H] activity|0008752||IEA,NADPH dehydrogenase (quinone) activity|0008753||IEA,FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA,NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA,FMN reductase (NADPH) activity|0052873||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462749.3;locus_tag=CFSAN001082_RS26910;product=NADPH-dependent FMN reductase;protein_id=WP_001575173.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	14972	16309	.	-	.	ID=gene-CFSAN001082_RS26915;Name=adeP;gbkey=Gene;gene=adeP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26915;old_locus_tag=CFSAN001082_02817
NZ_APAH01000043.1	Protein Homology	CDS	14972	16309	.	-	0	ID=cds-WP_001519317.1;Parent=gene-CFSAN001082_RS26915;Dbxref=GenBank:WP_001519317.1;Name=WP_001519317.1;gbkey=CDS;gene=adeP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312678.1;locus_tag=CFSAN001082_RS26915;product=adenine permease AdeP;protein_id=WP_001519317.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	16478	17143	.	+	.	ID=gene-CFSAN001082_RS26920;Name=yieH;gbkey=Gene;gene=yieH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26920;old_locus_tag=CFSAN001082_02822
NZ_APAH01000043.1	Protein Homology	CDS	16478	17143	.	+	0	ID=cds-WP_000078082.1;Parent=gene-CFSAN001082_RS26920;Dbxref=GenBank:WP_000078082.1;Name=WP_000078082.1;gbkey=CDS;gene=yieH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462751.1;locus_tag=CFSAN001082_RS26920;product=6-phosphogluconate phosphatase;protein_id=WP_000078082.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	17238	17963	.	-	.	ID=gene-CFSAN001082_RS26925;Name=phoU;gbkey=Gene;gene=phoU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26925;old_locus_tag=CFSAN001082_02827
NZ_APAH01000043.1	Protein Homology	CDS	17238	17963	.	-	0	ID=cds-WP_000377800.1;Parent=gene-CFSAN001082_RS26925;Dbxref=GenBank:WP_000377800.1;Name=WP_000377800.1;Ontology_term=GO:0030643;gbkey=CDS;gene=phoU;go_process=intracellular phosphate ion homeostasis|0030643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462752.1;locus_tag=CFSAN001082_RS26925;product=phosphate signaling complex protein PhoU;protein_id=WP_000377800.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	17978	18751	.	-	.	ID=gene-CFSAN001082_RS26930;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26930;old_locus_tag=CFSAN001082_02832
NZ_APAH01000043.1	Protein Homology	CDS	17978	18751	.	-	0	ID=cds-WP_000063118.1;Parent=gene-CFSAN001082_RS26930;Dbxref=GenBank:WP_000063118.1;Name=WP_000063118.1;Ontology_term=GO:0006817,GO:0005524,GO:0015415,GO:0009898,GO:0055052;gbkey=CDS;gene=pstB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000063125.1;locus_tag=CFSAN001082_RS26930;product=phosphate ABC transporter ATP-binding protein PstB;protein_id=WP_000063118.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	18838	19728	.	-	.	ID=gene-CFSAN001082_RS26935;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26935;old_locus_tag=CFSAN001082_02837
NZ_APAH01000043.1	Protein Homology	CDS	18838	19728	.	-	0	ID=cds-WP_000212197.1;Parent=gene-CFSAN001082_RS26935;Dbxref=GenBank:WP_000212197.1;Name=WP_000212197.1;Ontology_term=GO:0035435,GO:0005886;gbkey=CDS;gene=pstA;go_component=plasma membrane|0005886||IEA;go_process=phosphate ion transmembrane transport|0035435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462754.1;locus_tag=CFSAN001082_RS26935;product=phosphate ABC transporter permease PstA;protein_id=WP_000212197.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	19728	20687	.	-	.	ID=gene-CFSAN001082_RS26940;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26940;old_locus_tag=CFSAN001082_02842
NZ_APAH01000043.1	Protein Homology	CDS	19728	20687	.	-	0	ID=cds-WP_000741630.1;Parent=gene-CFSAN001082_RS26940;Dbxref=GenBank:WP_000741630.1;Name=WP_000741630.1;Ontology_term=GO:0006817,GO:0055085,GO:0016020;gbkey=CDS;gene=pstC;go_component=membrane|0016020||IEA;go_process=phosphate ion transport|0006817||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008806729.1;locus_tag=CFSAN001082_RS26940;product=phosphate ABC transporter permease PstC;protein_id=WP_000741630.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	20823	21863	.	-	.	ID=gene-CFSAN001082_RS26945;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26945;old_locus_tag=CFSAN001082_02847
NZ_APAH01000043.1	Protein Homology	CDS	20823	21863	.	-	0	ID=cds-WP_000867131.1;Parent=gene-CFSAN001082_RS26945;Dbxref=GenBank:WP_000867131.1;Name=WP_000867131.1;Ontology_term=GO:0035435,GO:0042301,GO:0043190;gbkey=CDS;gene=pstS;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=phosphate ion binding|0042301||IEA;go_process=phosphate ion transmembrane transport|0035435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462756.1;locus_tag=CFSAN001082_RS26945;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=WP_000867131.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	22029	23402	.	-	.	ID=gene-CFSAN001082_RS48695;Name=CFSAN001082_RS48695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48695;old_locus_tag=CFSAN001082_02852
NZ_APAH01000043.1	Protein Homology	CDS	22029	23402	.	-	0	ID=cds-WP_001525663.1;Parent=gene-CFSAN001082_RS48695;Dbxref=GenBank:WP_001525663.1;Name=WP_001525663.1;Ontology_term=GO:0009401,GO:0022877,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462757.1;locus_tag=CFSAN001082_RS48695;product=fructose-specific PTS transporter subunit EIIC;protein_id=WP_001525663.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	23451	24269	.	-	.	ID=gene-CFSAN001082_RS48700;Name=CFSAN001082_RS48700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48700;old_locus_tag=CFSAN001082_02857
NZ_APAH01000043.1	Protein Homology	CDS	23451	24269	.	-	0	ID=cds-WP_000166716.1;Parent=gene-CFSAN001082_RS48700;Dbxref=GenBank:WP_000166716.1;Name=WP_000166716.1;Ontology_term=GO:0004764;gbkey=CDS;go_function=shikimate 3-dehydrogenase (NADP+) activity|0004764||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462758.1;locus_tag=CFSAN001082_RS48700;product=shikimate 5-dehydrogenase;protein_id=WP_000166716.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	24364	26121	.	+	.	ID=gene-CFSAN001082_RS26960;Name=CFSAN001082_RS26960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26960;old_locus_tag=CFSAN001082_02862
NZ_APAH01000043.1	Protein Homology	CDS	24364	26121	.	+	0	ID=cds-WP_023253825.1;Parent=gene-CFSAN001082_RS26960;Dbxref=GenBank:WP_023253825.1;Name=WP_023253825.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462759.1;locus_tag=CFSAN001082_RS26960;product=SgrR family transcriptional regulator;protein_id=WP_023253825.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	26272	28101	.	-	.	ID=gene-CFSAN001082_RS26965;Name=glmS;gbkey=Gene;gene=glmS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26965;old_locus_tag=CFSAN001082_02867
NZ_APAH01000043.1	Protein Homology	CDS	26272	28101	.	-	0	ID=cds-WP_000334059.1;Parent=gene-CFSAN001082_RS26965;Dbxref=GenBank:WP_000334059.1;Name=WP_000334059.1;Ontology_term=GO:1901137,GO:0004360;gbkey=CDS;gene=glmS;go_function=glutamine-fructose-6-phosphate transaminase (isomerizing) activity|0004360||IEA;go_process=carbohydrate derivative biosynthetic process|1901137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121462.1;locus_tag=CFSAN001082_RS26965;product=glutamine--fructose-6-phosphate transaminase (isomerizing);protein_id=WP_000334059.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	28290	29660	.	-	.	ID=gene-CFSAN001082_RS26970;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26970;old_locus_tag=CFSAN001082_02872
NZ_APAH01000043.1	Protein Homology	CDS	28290	29660	.	-	0	ID=cds-WP_023253826.1;Parent=gene-CFSAN001082_RS26970;Dbxref=GenBank:WP_023253826.1;Name=WP_023253826.1;Ontology_term=GO:0000902,GO:0006048,GO:0009252,GO:0000287,GO:0003977,GO:0019134;gbkey=CDS;gene=glmU;go_function=magnesium ion binding|0000287||IEA,UDP-N-acetylglucosamine diphosphorylase activity|0003977||IEA,glucosamine-1-phosphate N-acetyltransferase activity|0019134||IEA;go_process=cell morphogenesis|0000902||IEA,UDP-N-acetylglucosamine biosynthetic process|0006048||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462761.1;locus_tag=CFSAN001082_RS26970;product=bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;protein_id=WP_023253826.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	29980	30678	.	-	.	ID=gene-CFSAN001082_RS26975;Name=CFSAN001082_RS26975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26975;old_locus_tag=CFSAN001082_02877
NZ_APAH01000043.1	Protein Homology	CDS	29980	30678	.	-	0	ID=cds-WP_023253827.1;Parent=gene-CFSAN001082_RS26975;Dbxref=GenBank:WP_023253827.1;Name=WP_023253827.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462762.1;locus_tag=CFSAN001082_RS26975;product=Bax inhibitor-1/YccA family protein;protein_id=WP_023253827.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	30908	31327	.	-	.	ID=gene-CFSAN001082_RS26980;Name=CFSAN001082_RS26980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26980;old_locus_tag=CFSAN001082_02882
NZ_APAH01000043.1	Protein Homology	CDS	30908	31327	.	-	0	ID=cds-WP_001251971.1;Parent=gene-CFSAN001082_RS26980;Dbxref=GenBank:WP_001251971.1;Name=WP_001251971.1;Ontology_term=GO:0015986,GO:0046933;gbkey=CDS;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001251972.1;locus_tag=CFSAN001082_RS26980;product=F0F1 ATP synthase subunit epsilon;protein_id=WP_001251971.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	31348	32730	.	-	.	ID=gene-CFSAN001082_RS26985;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26985;old_locus_tag=CFSAN001082_02887
NZ_APAH01000043.1	Protein Homology	CDS	31348	32730	.	-	0	ID=cds-WP_000190499.1;Parent=gene-CFSAN001082_RS26985;Dbxref=GenBank:WP_000190499.1;Name=WP_000190499.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpD;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017800291.1;locus_tag=CFSAN001082_RS26985;product=F0F1 ATP synthase subunit beta;protein_id=WP_000190499.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	32757	33620	.	-	.	ID=gene-CFSAN001082_RS26990;Name=atpG;gbkey=Gene;gene=atpG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26990;old_locus_tag=CFSAN001082_02892
NZ_APAH01000043.1	Protein Homology	CDS	32757	33620	.	-	0	ID=cds-WP_000896506.1;Parent=gene-CFSAN001082_RS26990;Dbxref=GenBank:WP_000896506.1;Name=WP_000896506.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpG;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882764.1;locus_tag=CFSAN001082_RS26990;product=F0F1 ATP synthase subunit gamma;protein_id=WP_000896506.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	33671	35212	.	-	.	ID=gene-CFSAN001082_RS26995;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS26995;old_locus_tag=CFSAN001082_02897
NZ_APAH01000043.1	Protein Homology	CDS	33671	35212	.	-	0	ID=cds-WP_001176751.1;Parent=gene-CFSAN001082_RS26995;Dbxref=GenBank:WP_001176751.1;Name=WP_001176751.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpA;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001176751.1;locus_tag=CFSAN001082_RS26995;product=F0F1 ATP synthase subunit alpha;protein_id=WP_001176751.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	35225	35758	.	-	.	ID=gene-CFSAN001082_RS27000;Name=atpH;gbkey=Gene;gene=atpH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27000;old_locus_tag=CFSAN001082_02902
NZ_APAH01000043.1	Protein Homology	CDS	35225	35758	.	-	0	ID=cds-WP_001288957.1;Parent=gene-CFSAN001082_RS27000;Dbxref=GenBank:WP_001288957.1;Name=WP_001288957.1;Ontology_term=GO:0015986,GO:0046933,GO:0016020;gbkey=CDS;gene=atpH;go_component=membrane|0016020||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966593.1;locus_tag=CFSAN001082_RS27000;product=F0F1 ATP synthase subunit delta;protein_id=WP_001288957.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	35773	36243	.	-	.	ID=gene-CFSAN001082_RS27005;Name=atpF;gbkey=Gene;gene=atpF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27005;old_locus_tag=CFSAN001082_02907
NZ_APAH01000043.1	Protein Homology	CDS	35773	36243	.	-	0	ID=cds-WP_001052212.1;Parent=gene-CFSAN001082_RS27005;Dbxref=GenBank:WP_001052212.1;Name=WP_001052212.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;gene=atpF;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001052215.1;locus_tag=CFSAN001082_RS27005;product=F0F1 ATP synthase subunit B;protein_id=WP_001052212.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	36303	36542	.	-	.	ID=gene-CFSAN001082_RS27010;Name=atpE;gbkey=Gene;gene=atpE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27010;old_locus_tag=CFSAN001082_02912
NZ_APAH01000043.1	Protein Homology	CDS	36303	36542	.	-	0	ID=cds-WP_000429386.1;Parent=gene-CFSAN001082_RS27010;Dbxref=GenBank:WP_000429386.1;Name=WP_000429386.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;gene=atpE;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004246596.1;locus_tag=CFSAN001082_RS27010;product=F0F1 ATP synthase subunit C;protein_id=WP_000429386.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	36589	37404	.	-	.	ID=gene-CFSAN001082_RS27015;Name=atpB;gbkey=Gene;gene=atpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27015;old_locus_tag=CFSAN001082_02917
NZ_APAH01000043.1	Protein Homology	CDS	36589	37404	.	-	0	ID=cds-WP_000135632.1;Parent=gene-CFSAN001082_RS27015;Dbxref=GenBank:WP_000135632.1;Name=WP_000135632.1;Ontology_term=GO:0015986,GO:0015078,GO:0045259;gbkey=CDS;gene=atpB;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121454.1;locus_tag=CFSAN001082_RS27015;product=F0F1 ATP synthase subunit A;protein_id=WP_000135632.1;transl_table=11
NZ_APAH01000043.1	RefSeq	gene	37413	37793	.	-	.	ID=gene-CFSAN001082_RS27020;Name=atpI;gbkey=Gene;gene=atpI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27020;old_locus_tag=CFSAN001082_02922
NZ_APAH01000043.1	Protein Homology	CDS	37413	37793	.	-	0	ID=cds-WP_000116685.1;Parent=gene-CFSAN001082_RS27020;Dbxref=GenBank:WP_000116685.1;Name=WP_000116685.1;gbkey=CDS;gene=atpI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462771.1;locus_tag=CFSAN001082_RS27020;product=F0F1 ATP synthase subunit I;protein_id=WP_000116685.1;transl_table=11
##sequence-region NZ_APAH01000044.1 1 402
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000044.1	RefSeq	region	1	402	.	+	.	ID=NZ_APAH01000044.1:1..402;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000044.1	RefSeq	pseudogene	1	306	.	+	.	ID=gene-CFSAN001082_RS27025;Name=ssaT;gbkey=Gene;gene=ssaT;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS27025;old_locus_tag=CFSAN001082_02927;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000044.1	Protein Homology	CDS	1	306	.	+	0	ID=cds-CFSAN001082_RS27025;Parent=gene-CFSAN001082_RS27025;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;gene=ssaT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460386.1;locus_tag=CFSAN001082_RS27025;partial=true;product=SPI-2 type III secretion system apparatus protein SsaT;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000044.1	RefSeq	gene	303	402	.	+	.	ID=gene-CFSAN001082_RS46520;Name=CFSAN001082_RS46520;end_range=402,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46520;old_locus_tag=CFSAN001082_02932;partial=true
NZ_APAH01000044.1	Protein Homology	CDS	303	402	.	+	0	ID=cds-WP_023253829.1;Parent=gene-CFSAN001082_RS46520;Dbxref=GenBank:WP_023253829.1;Name=WP_023253829.1;Ontology_term=GO:0009306,GO:0016020;end_range=402,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460387.1;locus_tag=CFSAN001082_RS46520;partial=true;product=EscU/YscU/HrcU family type III secretion system export apparatus switch protein;protein_id=WP_023253829.1;transl_table=11
##sequence-region NZ_APAH01000045.1 1 286
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000045.1	RefSeq	region	1	286	.	+	.	ID=NZ_APAH01000045.1:1..286;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000045.1	RefSeq	pseudogene	1	206	.	-	.	ID=gene-CFSAN001082_RS46525;Name=CFSAN001082_RS46525;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46525;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000045.1	Protein Homology	CDS	1	206	.	-	0	ID=cds-CFSAN001082_RS46525;Parent=gene-CFSAN001082_RS46525;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448089.1;locus_tag=CFSAN001082_RS46525;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000046.1 1 24390
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000046.1	RefSeq	region	1	24390	.	+	.	ID=NZ_APAH01000046.1:1..24390;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000046.1	RefSeq	gene	1	1126	.	+	.	ID=gene-CFSAN001082_RS27030;Name=CFSAN001082_RS27030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27030;old_locus_tag=CFSAN001082_02937;partial=true;start_range=.,1
NZ_APAH01000046.1	Protein Homology	CDS	1	1126	.	+	1	ID=cds-WP_023253830.1;Parent=gene-CFSAN001082_RS27030;Dbxref=GenBank:WP_023253830.1;Name=WP_023253830.1;Ontology_term=GO:0050660,GO:0050661;gbkey=CDS;go_function=flavin adenine dinucleotide binding|0050660||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462489.1;locus_tag=CFSAN001082_RS27030;partial=true;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_023253830.1;start_range=.,1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	1432	2499	.	+	.	ID=gene-CFSAN001082_RS27035;Name=CFSAN001082_RS27035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27035;old_locus_tag=CFSAN001082_02942
NZ_APAH01000046.1	Protein Homology	CDS	1432	2499	.	+	0	ID=cds-WP_000359836.1;Parent=gene-CFSAN001082_RS27035;Dbxref=GenBank:WP_000359836.1;Name=WP_000359836.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462488.1;locus_tag=CFSAN001082_RS27035;product=HlyD family secretion protein;protein_id=WP_000359836.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	2496	5237	.	+	.	ID=gene-CFSAN001082_RS27040;Name=rbbA;gbkey=Gene;gene=rbbA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27040;old_locus_tag=CFSAN001082_02947
NZ_APAH01000046.1	Protein Homology	CDS	2496	5237	.	+	0	ID=cds-WP_023253831.1;Parent=gene-CFSAN001082_RS27040;Dbxref=GenBank:WP_023253831.1;Name=WP_023253831.1;Ontology_term=GO:0055085,GO:0005524,GO:0042626,GO:0016020,GO:0043190;gbkey=CDS;gene=rbbA;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709254.1;locus_tag=CFSAN001082_RS27040;product=ribosome-associated ATPase/putative transporter RbbA;protein_id=WP_023253831.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	5237	6361	.	+	.	ID=gene-CFSAN001082_RS27045;Name=CFSAN001082_RS27045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27045;old_locus_tag=CFSAN001082_02952
NZ_APAH01000046.1	Protein Homology	CDS	5237	6361	.	+	0	ID=cds-WP_023253832.1;Parent=gene-CFSAN001082_RS27045;Dbxref=GenBank:WP_023253832.1;Name=WP_023253832.1;Ontology_term=GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462486.1;locus_tag=CFSAN001082_RS27045;product=ABC transporter permease;protein_id=WP_023253832.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	6450	6851	.	-	.	ID=gene-CFSAN001082_RS27050;Name=nikR;gbkey=Gene;gene=nikR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27050;old_locus_tag=CFSAN001082_02957
NZ_APAH01000046.1	Protein Homology	CDS	6450	6851	.	-	0	ID=cds-WP_001190057.1;Parent=gene-CFSAN001082_RS27050;Dbxref=GenBank:WP_001190057.1;Name=WP_001190057.1;Ontology_term=GO:0006355,GO:0010045,GO:0003677,GO:0016151;gbkey=CDS;gene=nikR;go_function=DNA binding|0003677||IEA,nickel cation binding|0016151||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,response to nickel cation|0010045||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462485.1;locus_tag=CFSAN001082_RS27050;product=nickel-responsive transcriptional regulator NikR;protein_id=WP_001190057.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	6943	7521	.	-	.	ID=gene-CFSAN001082_RS27055;Name=acpT;gbkey=Gene;gene=acpT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27055;old_locus_tag=CFSAN001082_02962
NZ_APAH01000046.1	Protein Homology	CDS	6943	7521	.	-	0	ID=cds-WP_000285380.1;Parent=gene-CFSAN001082_RS27055;Dbxref=GenBank:WP_000285380.1;Name=WP_000285380.1;gbkey=CDS;gene=acpT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462484.1;locus_tag=CFSAN001082_RS27055;product=4'-phosphopantetheinyl transferase AcpT;protein_id=WP_000285380.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	7573	8622	.	-	.	ID=gene-CFSAN001082_RS27060;Name=CFSAN001082_RS27060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27060;old_locus_tag=CFSAN001082_02967
NZ_APAH01000046.1	Protein Homology	CDS	7573	8622	.	-	0	ID=cds-WP_000179589.1;Parent=gene-CFSAN001082_RS27060;Dbxref=GenBank:WP_000179589.1;Name=WP_000179589.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462483.1;locus_tag=CFSAN001082_RS27060;product=AI-2E family transporter;protein_id=WP_000179589.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	8712	9971	.	+	.	ID=gene-CFSAN001082_RS27065;Name=CFSAN001082_RS27065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27065;old_locus_tag=CFSAN001082_02972
NZ_APAH01000046.1	Protein Homology	CDS	8712	9971	.	+	0	ID=cds-WP_077684039.1;Parent=gene-CFSAN001082_RS27065;Dbxref=GenBank:WP_077684039.1;Name=WP_077684039.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462482.3;locus_tag=CFSAN001082_RS27065;product=MFS transporter;protein_id=WP_077684039.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	9975	10532	.	-	.	ID=gene-CFSAN001082_RS27070;Name=CFSAN001082_RS27070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27070;old_locus_tag=CFSAN001082_02977
NZ_APAH01000046.1	Protein Homology	CDS	9975	10532	.	-	0	ID=cds-WP_001245278.1;Parent=gene-CFSAN001082_RS27070;Dbxref=GenBank:WP_001245278.1;Name=WP_001245278.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462481.1;locus_tag=CFSAN001082_RS27070;product=DcrB family lipoprotein;protein_id=WP_001245278.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	10605	11270	.	-	.	ID=gene-CFSAN001082_RS27075;Name=CFSAN001082_RS27075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27075;old_locus_tag=CFSAN001082_02982
NZ_APAH01000046.1	Protein Homology	CDS	10605	11270	.	-	0	ID=cds-WP_000187489.1;Parent=gene-CFSAN001082_RS27075;Dbxref=GenBank:WP_000187489.1;Name=WP_000187489.1;Ontology_term=GO:1990397;gbkey=CDS;go_process=queuosine salvage|1990397||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462480.1;locus_tag=CFSAN001082_RS27075;product=7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter;protein_id=WP_000187489.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	11440	11685	.	+	.	ID=gene-CFSAN001082_RS27080;Name=tusA;gbkey=Gene;gene=tusA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27080;old_locus_tag=CFSAN001082_02987
NZ_APAH01000046.1	Protein Homology	CDS	11440	11685	.	+	0	ID=cds-WP_001541054.1;Parent=gene-CFSAN001082_RS27080;Dbxref=GenBank:WP_001541054.1;Name=WP_001541054.1;Ontology_term=GO:0002143,GO:0097163;gbkey=CDS;gene=tusA;go_function=sulfur carrier activity|0097163||IEA;go_process=tRNA wobble position uridine thiolation|0002143||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462479.1;locus_tag=CFSAN001082_RS27080;product=sulfurtransferase TusA;protein_id=WP_001541054.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	11709	13352	.	-	.	ID=gene-CFSAN001082_RS27085;Name=tcp;gbkey=Gene;gene=tcp;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27085;old_locus_tag=CFSAN001082_02992
NZ_APAH01000046.1	Protein Homology	CDS	11709	13352	.	-	0	ID=cds-WP_000789682.1;Parent=gene-CFSAN001082_RS27085;Dbxref=GenBank:WP_000789682.1;Name=WP_000789682.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888;gbkey=CDS;gene=tcp;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462478.1;locus_tag=CFSAN001082_RS27085;product=methyl-accepting chemotaxis citrate transducer;protein_id=WP_000789682.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	13552	15750	.	-	.	ID=gene-CFSAN001082_RS27090;Name=zntA;gbkey=Gene;gene=zntA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27090;old_locus_tag=CFSAN001082_02997
NZ_APAH01000046.1	Protein Homology	CDS	13552	15750	.	-	0	ID=cds-WP_023253833.1;Parent=gene-CFSAN001082_RS27090;Dbxref=GenBank:WP_023253833.1;Name=WP_023253833.1;Ontology_term=GO:0006812,GO:0005215,GO:0005524,GO:0016887,GO:0019829,GO:0046872,GO:0016020;gbkey=CDS;gene=zntA;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled monoatomic cation transmembrane transporter activity|0019829||IEA,metal ion binding|0046872||IEA;go_process=monoatomic cation transport|0006812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462477.1;locus_tag=CFSAN001082_RS27090;product=Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA;protein_id=WP_023253833.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	15831	16457	.	-	.	ID=gene-CFSAN001082_RS27095;Name=CFSAN001082_RS27095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27095;old_locus_tag=CFSAN001082_03002
NZ_APAH01000046.1	Protein Homology	CDS	15831	16457	.	-	0	ID=cds-WP_000964735.1;Parent=gene-CFSAN001082_RS27095;Dbxref=GenBank:WP_000964735.1;Name=WP_000964735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462476.1;locus_tag=CFSAN001082_RS27095;product=lysoplasmalogenase;protein_id=WP_000964735.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	16599	16970	.	+	.	ID=gene-CFSAN001082_RS27100;Name=CFSAN001082_RS27100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27100;old_locus_tag=CFSAN001082_03007
NZ_APAH01000046.1	Protein Homology	CDS	16599	16970	.	+	0	ID=cds-WP_023253834.1;Parent=gene-CFSAN001082_RS27100;Dbxref=GenBank:WP_023253834.1;Name=WP_023253834.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462475.1;locus_tag=CFSAN001082_RS27100;product=DUF2500 domain-containing protein;protein_id=WP_023253834.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	16992	17261	.	-	.	ID=gene-CFSAN001082_RS27105;Name=CFSAN001082_RS27105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27105;old_locus_tag=CFSAN001082_03012
NZ_APAH01000046.1	Protein Homology	CDS	16992	17261	.	-	0	ID=cds-WP_000906757.1;Parent=gene-CFSAN001082_RS27105;Dbxref=GenBank:WP_000906757.1;Name=WP_000906757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312342.1;locus_tag=CFSAN001082_RS27105;product=DUF1145 family protein;protein_id=WP_000906757.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	17251	17847	.	-	.	ID=gene-CFSAN001082_RS27110;Name=rsmD;gbkey=Gene;gene=rsmD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27110;old_locus_tag=CFSAN001082_03017
NZ_APAH01000046.1	Protein Homology	CDS	17251	17847	.	-	0	ID=cds-WP_000743275.1;Parent=gene-CFSAN001082_RS27110;Dbxref=GenBank:WP_000743275.1;Name=WP_000743275.1;Ontology_term=GO:0031167,GO:0003676,GO:0008168;gbkey=CDS;gene=rsmD;go_function=nucleic acid binding|0003676||IEA,methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462473.1;locus_tag=CFSAN001082_RS27110;product=16S rRNA (guanine(966)-N(2))-methyltransferase;protein_id=WP_000743275.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	17973	19448	.	+	.	ID=gene-CFSAN001082_RS27115;Name=ftsY;gbkey=Gene;gene=ftsY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27115;old_locus_tag=CFSAN001082_03022
NZ_APAH01000046.1	Protein Homology	CDS	17973	19448	.	+	0	ID=cds-WP_023253835.1;Parent=gene-CFSAN001082_RS27115;Dbxref=GenBank:WP_023253835.1;Name=WP_023253835.1;Ontology_term=GO:0006614,GO:0009306,GO:0003924,GO:0005047;gbkey=CDS;gene=ftsY;go_function=GTPase activity|0003924||IEA,signal recognition particle binding|0005047||IEA;go_process=SRP-dependent cotranslational protein targeting to membrane|0006614||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462472.1;locus_tag=CFSAN001082_RS27115;product=signal recognition particle-docking protein FtsY;protein_id=WP_023253835.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	19451	20119	.	+	.	ID=gene-CFSAN001082_RS27120;Name=ftsE;gbkey=Gene;gene=ftsE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27120;old_locus_tag=CFSAN001082_03027
NZ_APAH01000046.1	Protein Homology	CDS	19451	20119	.	+	0	ID=cds-WP_000617729.1;Parent=gene-CFSAN001082_RS27120;Dbxref=GenBank:WP_000617729.1;Name=WP_000617729.1;Ontology_term=GO:0000910,GO:0005524;gbkey=CDS;gene=ftsE;go_function=ATP binding|0005524||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462471.1;locus_tag=CFSAN001082_RS27120;product=cell division ATP-binding protein FtsE;protein_id=WP_000617729.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	20112	21167	.	+	.	ID=gene-CFSAN001082_RS27125;Name=ftsX;gbkey=Gene;gene=ftsX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27125;old_locus_tag=CFSAN001082_03032
NZ_APAH01000046.1	Protein Homology	CDS	20112	21167	.	+	0	ID=cds-WP_001081707.1;Parent=gene-CFSAN001082_RS27125;Dbxref=GenBank:WP_001081707.1;Name=WP_001081707.1;Ontology_term=GO:0000910;gbkey=CDS;gene=ftsX;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462470.1;locus_tag=CFSAN001082_RS27125;product=permease-like cell division protein FtsX;protein_id=WP_001081707.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	21413	22267	.	+	.	ID=gene-CFSAN001082_RS27130;Name=rpoH;gbkey=Gene;gene=rpoH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27130;old_locus_tag=CFSAN001082_03037
NZ_APAH01000046.1	Protein Homology	CDS	21413	22267	.	+	0	ID=cds-WP_000159621.1;Parent=gene-CFSAN001082_RS27130;Dbxref=GenBank:WP_000159621.1;Name=WP_000159621.1;Ontology_term=GO:0006352,GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoH;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462469.1;locus_tag=CFSAN001082_RS27130;product=RNA polymerase sigma factor RpoH;protein_id=WP_000159621.1;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	22589	23692	.	+	.	ID=gene-CFSAN001082_RS27135;Name=livJ;gbkey=Gene;gene=livJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27135;old_locus_tag=CFSAN001082_03042
NZ_APAH01000046.1	Protein Homology	CDS	22589	23692	.	+	0	ID=cds-WP_023253836.1;Parent=gene-CFSAN001082_RS27135;Dbxref=GenBank:WP_023253836.1;Name=WP_023253836.1;gbkey=CDS;gene=livJ;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026223.1;locus_tag=CFSAN001082_RS27135;product=branched chain amino acid ABC transporter substrate-binding protein LivJ;protein_id=WP_023253836.1;transl_table=11
NZ_APAH01000046.1	RefSeq	pseudogene	23734	23837	.	-	.	ID=gene-CFSAN001082_RS0122890;Name=CFSAN001082_RS0122890;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0122890;partial=true;pseudo=true;start_range=.,23734
NZ_APAH01000046.1	Protein Homology	CDS	23734	23837	.	-	0	ID=cds-CFSAN001082_RS0122890;Parent=gene-CFSAN001082_RS0122890;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462467.1;locus_tag=CFSAN001082_RS0122890;partial=true;product=hypothetical protein;pseudo=true;start_range=.,23734;transl_table=11
NZ_APAH01000046.1	RefSeq	gene	23815	24198	.	-	.	ID=gene-CFSAN001082_RS27140;Name=panM;gbkey=Gene;gene=panM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27140;old_locus_tag=CFSAN001082_03047
NZ_APAH01000046.1	Protein Homology	CDS	23815	24198	.	-	0	ID=cds-WP_023181730.1;Parent=gene-CFSAN001082_RS27140;Dbxref=GenBank:WP_023181730.1;Name=WP_023181730.1;Ontology_term=GO:0015940,GO:0031638,GO:0008080;gbkey=CDS;gene=panM;go_function=N-acetyltransferase activity|0008080||IEA;go_process=pantothenate biosynthetic process|0015940||IEA,zymogen activation|0031638||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462466.1;locus_tag=CFSAN001082_RS27140;product=aspartate 1-decarboxylase autocleavage activator PanM;protein_id=WP_023181730.1;transl_table=11
##sequence-region NZ_APAH01000047.1 1 25653
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000047.1	RefSeq	region	1	25653	.	+	.	ID=NZ_APAH01000047.1:1..25653;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000047.1	RefSeq	gene	119	1915	.	+	.	ID=gene-CFSAN001082_RS27145;Name=CFSAN001082_RS27145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27145;old_locus_tag=CFSAN001082_03052
NZ_APAH01000047.1	Protein Homology	CDS	119	1915	.	+	0	ID=cds-WP_023253837.1;Parent=gene-CFSAN001082_RS27145;Dbxref=GenBank:WP_023253837.1;Name=WP_023253837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016159766.1;locus_tag=CFSAN001082_RS27145;product=aryl-sulfate sulfotransferase;protein_id=WP_023253837.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	1935	2606	.	+	.	ID=gene-CFSAN001082_RS27150;Name=CFSAN001082_RS27150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27150;old_locus_tag=CFSAN001082_03057
NZ_APAH01000047.1	Protein Homology	CDS	1935	2606	.	+	0	ID=cds-WP_000096230.1;Parent=gene-CFSAN001082_RS27150;Dbxref=GenBank:WP_000096230.1;Name=WP_000096230.1;Ontology_term=GO:0015035;gbkey=CDS;go_function=protein-disulfide reductase activity|0015035||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462108.1;locus_tag=CFSAN001082_RS27150;product=thiol:disulfide interchange protein DsbA/DsbL;protein_id=WP_000096230.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	2621	3298	.	+	.	ID=gene-CFSAN001082_RS27155;Name=dsbI;gbkey=Gene;gene=dsbI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27155;old_locus_tag=CFSAN001082_03062
NZ_APAH01000047.1	Protein Homology	CDS	2621	3298	.	+	0	ID=cds-WP_000345576.1;Parent=gene-CFSAN001082_RS27155;Dbxref=GenBank:WP_000345576.1;Name=WP_000345576.1;gbkey=CDS;gene=dsbI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462109.1;locus_tag=CFSAN001082_RS27155;product=protein-disulfide oxidoreductase DsbI;protein_id=WP_000345576.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	3469	4122	.	-	.	ID=gene-CFSAN001082_RS27160;Name=ribB;gbkey=Gene;gene=ribB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27160;old_locus_tag=CFSAN001082_03072
NZ_APAH01000047.1	Protein Homology	CDS	3469	4122	.	-	0	ID=cds-WP_001076978.1;Parent=gene-CFSAN001082_RS27160;Dbxref=GenBank:WP_001076978.1;Name=WP_001076978.1;Ontology_term=GO:0008686;gbkey=CDS;gene=ribB;go_function=3%2C4-dihydroxy-2-butanone-4-phosphate synthase activity|0008686||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462110.1;locus_tag=CFSAN001082_RS27160;product=3%2C4-dihydroxy-2-butanone-4-phosphate synthase;protein_id=WP_001076978.1;transl_table=11
NZ_APAH01000047.1	cmsearch	riboswitch	4228	4426	.	-	.	ID=id-NZ_APAH01000047.1:4228..4426;Dbxref=RFAM:RF00050;Note=FMN riboswitch;bound_moiety=flavin mononucleotide;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_APAH01000047.1	RefSeq	gene	4559	4855	.	+	.	ID=gene-CFSAN001082_RS27165;Name=ubiK;gbkey=Gene;gene=ubiK;gene_biotype=protein_coding;gene_synonym=yqiC;locus_tag=CFSAN001082_RS27165;old_locus_tag=CFSAN001082_03077
NZ_APAH01000047.1	Protein Homology	CDS	4559	4855	.	+	0	ID=cds-WP_000566824.1;Parent=gene-CFSAN001082_RS27165;Dbxref=GenBank:WP_000566824.1;Name=WP_000566824.1;Ontology_term=GO:0006744,GO:0042802;gbkey=CDS;gene=ubiK;go_function=identical protein binding|0042802||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000566826.1;locus_tag=CFSAN001082_RS27165;product=ubiquinone biosynthesis accessory factor UbiK;protein_id=WP_000566824.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	4929	5138	.	-	.	ID=gene-CFSAN001082_RS27170;Name=glgS;gbkey=Gene;gene=glgS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27170;old_locus_tag=CFSAN001082_03082
NZ_APAH01000047.1	Protein Homology	CDS	4929	5138	.	-	0	ID=cds-WP_000928927.1;Parent=gene-CFSAN001082_RS27170;Dbxref=GenBank:WP_000928927.1;Name=WP_000928927.1;gbkey=CDS;gene=glgS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462112.1;locus_tag=CFSAN001082_RS27170;product=cell surface composition regulator GlgS;protein_id=WP_000928927.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	5396	6016	.	+	.	ID=gene-CFSAN001082_RS27175;Name=CFSAN001082_RS27175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27175;old_locus_tag=CFSAN001082_03087
NZ_APAH01000047.1	Protein Homology	CDS	5396	6016	.	+	0	ID=cds-WP_000171739.1;Parent=gene-CFSAN001082_RS27175;Dbxref=GenBank:WP_000171739.1;Name=WP_000171739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462113.1;locus_tag=CFSAN001082_RS27175;product=OB-fold-containig protein;protein_id=WP_000171739.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	6035	7714	.	+	.	ID=gene-CFSAN001082_RS27180;Name=CFSAN001082_RS27180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27180;old_locus_tag=CFSAN001082_03092
NZ_APAH01000047.1	Protein Homology	CDS	6035	7714	.	+	0	ID=cds-WP_000342879.1;Parent=gene-CFSAN001082_RS27180;Dbxref=GenBank:WP_000342879.1;Name=WP_000342879.1;Ontology_term=GO:0016020,GO:0016600;gbkey=CDS;go_component=membrane|0016020||IEA,flotillin complex|0016600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462114.1;locus_tag=CFSAN001082_RS27180;product=flotillin family protein;protein_id=WP_000342879.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	7953	8012	.	+	.	ID=gene-CFSAN001082_RS48620;Name=CFSAN001082_RS48620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48620
NZ_APAH01000047.1	Protein Homology	CDS	7953	8012	.	+	0	ID=cds-WP_192936148.1;Parent=gene-CFSAN001082_RS48620;Dbxref=GenBank:WP_192936148.1;Name=WP_192936148.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791255.1;locus_tag=CFSAN001082_RS48620;product=type I toxin-antitoxin system Ibs family toxin;protein_id=WP_192936148.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	8172	9605	.	-	.	ID=gene-CFSAN001082_RS27185;Name=hldE;gbkey=Gene;gene=hldE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27185;old_locus_tag=CFSAN001082_03102
NZ_APAH01000047.1	Protein Homology	CDS	8172	9605	.	-	0	ID=cds-WP_000867682.1;Parent=gene-CFSAN001082_RS27185;Dbxref=GenBank:WP_000867682.1;Name=WP_000867682.1;Ontology_term=GO:0005975,GO:0009058,GO:0016779;gbkey=CDS;gene=hldE;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=carbohydrate metabolic process|0005975||IEA,biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462115.1;locus_tag=CFSAN001082_RS27185;product=bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE;protein_id=WP_000867682.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	9653	12496	.	-	.	ID=gene-CFSAN001082_RS27190;Name=glnE;gbkey=Gene;gene=glnE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27190;old_locus_tag=CFSAN001082_03107
NZ_APAH01000047.1	Protein Homology	CDS	9653	12496	.	-	0	ID=cds-WP_023253839.1;Parent=gene-CFSAN001082_RS27190;Dbxref=GenBank:WP_023253839.1;Name=WP_023253839.1;Ontology_term=GO:0008882;gbkey=CDS;gene=glnE;go_function=[glutamate-ammonia-ligase] adenylyltransferase activity|0008882||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462116.1;locus_tag=CFSAN001082_RS27190;product=bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase;protein_id=WP_023253839.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	12614	13915	.	-	.	ID=gene-CFSAN001082_RS27195;Name=CFSAN001082_RS27195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27195;old_locus_tag=CFSAN001082_03112
NZ_APAH01000047.1	Protein Homology	CDS	12614	13915	.	-	0	ID=cds-WP_000046226.1;Parent=gene-CFSAN001082_RS27195;Dbxref=GenBank:WP_000046226.1;Name=WP_000046226.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462117.1;locus_tag=CFSAN001082_RS27195;product=inorganic triphosphatase;protein_id=WP_000046226.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	14157	14771	.	+	.	ID=gene-CFSAN001082_RS27200;Name=CFSAN001082_RS27200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27200;old_locus_tag=CFSAN001082_03117
NZ_APAH01000047.1	Protein Homology	CDS	14157	14771	.	+	0	ID=cds-WP_001125344.1;Parent=gene-CFSAN001082_RS27200;Dbxref=GenBank:WP_001125344.1;Name=WP_001125344.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462118.1;locus_tag=CFSAN001082_RS27200;product=TIGR04211 family SH3 domain-containing protein;protein_id=WP_001125344.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	14834	16075	.	+	.	ID=gene-CFSAN001082_RS27205;Name=CFSAN001082_RS27205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27205;old_locus_tag=CFSAN001082_03122
NZ_APAH01000047.1	Protein Homology	CDS	14834	16075	.	+	0	ID=cds-WP_023253840.1;Parent=gene-CFSAN001082_RS27205;Dbxref=GenBank:WP_023253840.1;Name=WP_023253840.1;Ontology_term=GO:0001680,GO:0003723,GO:0004810,GO:0005524;gbkey=CDS;go_function=RNA binding|0003723||IEA,CCA tRNA nucleotidyltransferase activity|0004810||IEA,ATP binding|0005524||IEA;go_process=tRNA 3'-terminal CCA addition|0001680||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462119.1;locus_tag=CFSAN001082_RS27205;product=multifunctional CCA addition/repair protein;protein_id=WP_023253840.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	16180	17001	.	-	.	ID=gene-CFSAN001082_RS27210;Name=bacA;gbkey=Gene;gene=bacA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27210;old_locus_tag=CFSAN001082_03127
NZ_APAH01000047.1	Protein Homology	CDS	16180	17001	.	-	0	ID=cds-WP_001281933.1;Parent=gene-CFSAN001082_RS27210;Dbxref=GenBank:WP_001281933.1;Name=WP_001281933.1;Ontology_term=GO:0016311,GO:0050380,GO:0016020;gbkey=CDS;gene=bacA;go_component=membrane|0016020||IEA;go_function=undecaprenyl-diphosphatase activity|0050380||IEA;go_process=dephosphorylation|0016311||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311967.1;locus_tag=CFSAN001082_RS27210;product=undecaprenyl-diphosphate phosphatase;protein_id=WP_001281933.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	17099	17458	.	-	.	ID=gene-CFSAN001082_RS27215;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27215;old_locus_tag=CFSAN001082_03132
NZ_APAH01000047.1	Protein Homology	CDS	17099	17458	.	-	0	ID=cds-WP_000355776.1;Parent=gene-CFSAN001082_RS27215;Dbxref=GenBank:WP_000355776.1;Name=WP_000355776.1;Ontology_term=GO:0006760,GO:0004150;gbkey=CDS;gene=folB;go_function=dihydroneopterin aldolase activity|0004150||IEA;go_process=folic acid-containing compound metabolic process|0006760||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001681574.1;locus_tag=CFSAN001082_RS27215;product=bifunctional dihydroneopterin aldolase/7%2C8-dihydroneopterin epimerase;protein_id=WP_000355776.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	17565	18176	.	+	.	ID=gene-CFSAN001082_RS27220;Name=plsY;gbkey=Gene;gene=plsY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27220;old_locus_tag=CFSAN001082_03137
NZ_APAH01000047.1	Protein Homology	CDS	17565	18176	.	+	0	ID=cds-WP_001272784.1;Parent=gene-CFSAN001082_RS27220;Dbxref=GenBank:WP_001272784.1;Name=WP_001272784.1;Ontology_term=GO:0006654,GO:0008374,GO:0005886;gbkey=CDS;gene=plsY;go_component=plasma membrane|0005886||IEA;go_function=O-acyltransferase activity|0008374||IEA;go_process=phosphatidic acid biosynthetic process|0006654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462122.1;locus_tag=CFSAN001082_RS27220;product=glycerol-3-phosphate 1-O-acyltransferase PlsY;protein_id=WP_001272784.1;transl_table=11
NZ_APAH01000047.1	RefSeq	pseudogene	18160	18303	.	+	.	ID=gene-CFSAN001082_RS48135;Name=CFSAN001082_RS48135;end_range=18303,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48135;partial=true;pseudo=true;start_range=.,18160
NZ_APAH01000047.1	Protein Homology	CDS	18160	18303	.	+	0	ID=cds-CFSAN001082_RS48135;Parent=gene-CFSAN001082_RS48135;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0016829;end_range=18303,.;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311971.1;locus_tag=CFSAN001082_RS48135;partial=true;product=fumarate hydratase;pseudo=true;start_range=.,18160;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	18426	19439	.	-	.	ID=gene-CFSAN001082_RS27225;Name=tsaD;gbkey=Gene;gene=tsaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27225;old_locus_tag=CFSAN001082_03142
NZ_APAH01000047.1	Protein Homology	CDS	18426	19439	.	-	0	ID=cds-WP_001264391.1;Parent=gene-CFSAN001082_RS27225;Dbxref=GenBank:WP_001264391.1;Name=WP_001264391.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaD;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001264383.1;locus_tag=CFSAN001082_RS27225;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;protein_id=WP_001264391.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	19667	19882	.	+	.	ID=gene-CFSAN001082_RS27230;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27230;old_locus_tag=CFSAN001082_03147
NZ_APAH01000047.1	Protein Homology	CDS	19667	19882	.	+	0	ID=cds-WP_001144069.1;Parent=gene-CFSAN001082_RS27230;Dbxref=GenBank:WP_001144069.1;Name=WP_001144069.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsU;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311975.1;locus_tag=CFSAN001082_RS27230;product=30S ribosomal protein S21;protein_id=WP_001144069.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	20118	21863	.	+	.	ID=gene-CFSAN001082_RS27235;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27235;old_locus_tag=CFSAN001082_03152
NZ_APAH01000047.1	Protein Homology	CDS	20118	21863	.	+	0	ID=cds-WP_000918865.1;Parent=gene-CFSAN001082_RS27235;Dbxref=GenBank:WP_000918865.1;Name=WP_000918865.1;Ontology_term=GO:0006269,GO:0003899;gbkey=CDS;gene=dnaG;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA replication%2C synthesis of primer|0006269||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462125.1;locus_tag=CFSAN001082_RS27235;product=DNA primase;protein_id=WP_000918865.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	21878	23860	.	+	.	ID=gene-CFSAN001082_RS27240;Name=rpoD;gbkey=Gene;gene=rpoD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27240;old_locus_tag=CFSAN001082_03157
NZ_APAH01000047.1	Protein Homology	CDS	21878	23860	.	+	0	ID=cds-WP_001120159.1;Parent=gene-CFSAN001082_RS27240;Dbxref=GenBank:WP_001120159.1;Name=WP_001120159.1;Ontology_term=GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoD;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: protein motif:HMM:NF004208.0;locus_tag=CFSAN001082_RS27240;product=RNA polymerase sigma factor RpoD;protein_id=WP_001120159.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	23984	24490	.	-	.	ID=gene-CFSAN001082_RS27245;Name=mug;gbkey=Gene;gene=mug;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27245;old_locus_tag=CFSAN001082_03162
NZ_APAH01000047.1	Protein Homology	CDS	23984	24490	.	-	0	ID=cds-WP_000237776.1;Parent=gene-CFSAN001082_RS27245;Dbxref=GenBank:WP_000237776.1;Name=WP_000237776.1;Ontology_term=GO:0006285,GO:0000700;gbkey=CDS;gene=mug;go_function=mismatch base pair DNA N-glycosylase activity|0000700||IEA;go_process=base-excision repair%2C AP site formation|0006285||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462127.1;locus_tag=CFSAN001082_RS27245;product=G/U mismatch-specific DNA glycosylase;protein_id=WP_000237776.1;transl_table=11
NZ_APAH01000047.1	RefSeq	gene	24616	24691	.	+	.	ID=gene-CFSAN001082_RS27250;Name=CFSAN001082_RS27250;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS27250;old_locus_tag=CFSAN001082_t03174
NZ_APAH01000047.1	tRNAscan-SE	tRNA	24616	24691	.	+	.	ID=rna-CFSAN001082_RS27250;Parent=gene-CFSAN001082_RS27250;anticodon=(pos:24649..24651);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS27250;product=tRNA-Ile
NZ_APAH01000047.1	tRNAscan-SE	exon	24616	24691	.	+	.	ID=exon-CFSAN001082_RS27250-1;Parent=rna-CFSAN001082_RS27250;anticodon=(pos:24649..24651);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS27250;product=tRNA-Ile
NZ_APAH01000047.1	RefSeq	gene	24771	25538	.	-	.	ID=gene-CFSAN001082_RS27255;Name=CFSAN001082_RS27255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27255;old_locus_tag=CFSAN001082_03167
NZ_APAH01000047.1	Protein Homology	CDS	24771	25538	.	-	0	ID=cds-WP_023253841.1;Parent=gene-CFSAN001082_RS27255;Dbxref=GenBank:WP_023253841.1;Name=WP_023253841.1;Ontology_term=GO:0015891,GO:0071949;gbkey=CDS;go_function=FAD binding|0071949||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462128.1;locus_tag=CFSAN001082_RS27255;product=siderophore-interacting protein;protein_id=WP_023253841.1;transl_table=11
##sequence-region NZ_APAH01000048.1 1 16047
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000048.1	RefSeq	region	1	16047	.	+	.	ID=NZ_APAH01000048.1:1..16047;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000048.1	RefSeq	gene	68	1441	.	-	.	ID=gene-CFSAN001082_RS27260;Name=cpsG;gbkey=Gene;gene=cpsG;gene_biotype=protein_coding;gene_synonym=manB;locus_tag=CFSAN001082_RS27260;old_locus_tag=CFSAN001082_03174
NZ_APAH01000048.1	Protein Homology	CDS	68	1441	.	-	0	ID=cds-WP_023253842.1;Parent=gene-CFSAN001082_RS27260;Dbxref=GenBank:WP_023253842.1;Name=WP_023253842.1;gbkey=CDS;gene=cpsG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310862.1;locus_tag=CFSAN001082_RS27260;product=colanic acid biosynthesis phosphomannomutase CpsG;protein_id=WP_023253842.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	1552	2994	.	-	.	ID=gene-CFSAN001082_RS27265;Name=cpsB;gbkey=Gene;gene=cpsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27265;old_locus_tag=CFSAN001082_03179
NZ_APAH01000048.1	Protein Homology	CDS	1552	2994	.	-	0	ID=cds-WP_077911123.1;Parent=gene-CFSAN001082_RS27265;Dbxref=GenBank:WP_077911123.1;Name=WP_077911123.1;Ontology_term=GO:0000271,GO:0016779;gbkey=CDS;gene=cpsB;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461050.3;locus_tag=CFSAN001082_RS27265;product=mannose-1-phosphate guanyltransferase;protein_id=WP_077911123.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	2991	4214	.	-	.	ID=gene-CFSAN001082_RS27270;Name=wcaI;gbkey=Gene;gene=wcaI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27270;old_locus_tag=CFSAN001082_03184
NZ_APAH01000048.1	Protein Homology	CDS	2991	4214	.	-	0	ID=cds-WP_023253843.1;Parent=gene-CFSAN001082_RS27270;Dbxref=GenBank:WP_023253843.1;Name=WP_023253843.1;gbkey=CDS;gene=wcaI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461051.1;locus_tag=CFSAN001082_RS27270;product=colanic acid biosynthesis fucosyltransferase WcaI;protein_id=WP_023253843.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	4211	4684	.	-	.	ID=gene-CFSAN001082_RS27275;Name=CFSAN001082_RS27275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27275;old_locus_tag=CFSAN001082_03189
NZ_APAH01000048.1	Protein Homology	CDS	4211	4684	.	-	0	ID=cds-WP_023253844.1;Parent=gene-CFSAN001082_RS27275;Dbxref=GenBank:WP_023253844.1;Name=WP_023253844.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001526160.1;locus_tag=CFSAN001082_RS27275;product=GDP-mannose mannosyl hydrolase;protein_id=WP_023253844.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	4687	5652	.	-	.	ID=gene-CFSAN001082_RS27280;Name=fcl;gbkey=Gene;gene=fcl;gene_biotype=protein_coding;gene_synonym=wcaG,yefB;locus_tag=CFSAN001082_RS27280;old_locus_tag=CFSAN001082_03194
NZ_APAH01000048.1	Protein Homology	CDS	4687	5652	.	-	0	ID=cds-WP_023253845.1;Parent=gene-CFSAN001082_RS27280;Dbxref=GenBank:WP_023253845.1;Name=WP_023253845.1;Ontology_term=GO:0042351,GO:0016853,GO:0050577;gbkey=CDS;gene=fcl;go_function=isomerase activity|0016853||IEA,GDP-L-fucose synthase activity|0050577||IEA;go_process='de novo' GDP-L-fucose biosynthetic process|0042351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461053.1;locus_tag=CFSAN001082_RS27280;product=GDP-L-fucose synthase;protein_id=WP_023253845.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	5655	6773	.	-	.	ID=gene-CFSAN001082_RS27285;Name=gmd;gbkey=Gene;gene=gmd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27285;old_locus_tag=CFSAN001082_03199
NZ_APAH01000048.1	Protein Homology	CDS	5655	6773	.	-	0	ID=cds-WP_020898985.1;Parent=gene-CFSAN001082_RS27285;Dbxref=GenBank:WP_020898985.1;Name=WP_020898985.1;Ontology_term=GO:0000271,GO:0019673,GO:0008446;gbkey=CDS;gene=gmd;go_function=GDP-mannose 4%2C6-dehydratase activity|0008446||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA,GDP-mannose metabolic process|0019673||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000048195.1;locus_tag=CFSAN001082_RS27285;product=GDP-mannose 4%2C6-dehydratase;protein_id=WP_020898985.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	6797	7351	.	-	.	ID=gene-CFSAN001082_RS27290;Name=wcaF;gbkey=Gene;gene=wcaF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27290;old_locus_tag=CFSAN001082_03204
NZ_APAH01000048.1	Protein Homology	CDS	6797	7351	.	-	0	ID=cds-WP_023253846.1;Parent=gene-CFSAN001082_RS27290;Dbxref=GenBank:WP_023253846.1;Name=WP_023253846.1;gbkey=CDS;gene=wcaF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461055.1;locus_tag=CFSAN001082_RS27290;product=colanic acid biosynthesis acetyltransferase WcaF;protein_id=WP_023253846.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	7367	8113	.	-	.	ID=gene-CFSAN001082_RS27295;Name=wcaE;gbkey=Gene;gene=wcaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27295;old_locus_tag=CFSAN001082_03209
NZ_APAH01000048.1	Protein Homology	CDS	7367	8113	.	-	0	ID=cds-WP_000480132.1;Parent=gene-CFSAN001082_RS27295;Dbxref=GenBank:WP_000480132.1;Name=WP_000480132.1;gbkey=CDS;gene=wcaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461056.1;locus_tag=CFSAN001082_RS27295;product=colanic acid biosynthesis glycosyltransferase WcaE;protein_id=WP_000480132.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	8126	9340	.	-	.	ID=gene-CFSAN001082_RS27300;Name=wcaD;gbkey=Gene;gene=wcaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27300;old_locus_tag=CFSAN001082_03214
NZ_APAH01000048.1	Protein Homology	CDS	8126	9340	.	-	0	ID=cds-WP_000091397.1;Parent=gene-CFSAN001082_RS27300;Dbxref=GenBank:WP_000091397.1;Name=WP_000091397.1;gbkey=CDS;gene=wcaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461057.1;locus_tag=CFSAN001082_RS27300;product=colanic acid polymerase WcaD;protein_id=WP_000091397.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	9315	10532	.	-	.	ID=gene-CFSAN001082_RS27305;Name=wcaC;gbkey=Gene;gene=wcaC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27305;old_locus_tag=CFSAN001082_03219
NZ_APAH01000048.1	Protein Homology	CDS	9315	10532	.	-	0	ID=cds-WP_023253847.1;Parent=gene-CFSAN001082_RS27305;Dbxref=GenBank:WP_023253847.1;Name=WP_023253847.1;Ontology_term=GO:0016757;gbkey=CDS;gene=wcaC;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461058.1;locus_tag=CFSAN001082_RS27305;product=colanic acid biosynthesis glycosyltransferase WcaC;protein_id=WP_023253847.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	10529	11017	.	-	.	ID=gene-CFSAN001082_RS27310;Name=wcaB;gbkey=Gene;gene=wcaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27310;old_locus_tag=CFSAN001082_03224
NZ_APAH01000048.1	Protein Homology	CDS	10529	11017	.	-	0	ID=cds-WP_000888724.1;Parent=gene-CFSAN001082_RS27310;Dbxref=GenBank:WP_000888724.1;Name=WP_000888724.1;gbkey=CDS;gene=wcaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461059.1;locus_tag=CFSAN001082_RS27310;product=colanic acid biosynthesis acetyltransferase WcaB;protein_id=WP_000888724.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	11020	11862	.	-	.	ID=gene-CFSAN001082_RS27315;Name=wcaA;gbkey=Gene;gene=wcaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27315;old_locus_tag=CFSAN001082_03229
NZ_APAH01000048.1	Protein Homology	CDS	11020	11862	.	-	0	ID=cds-WP_000205695.1;Parent=gene-CFSAN001082_RS27315;Dbxref=GenBank:WP_000205695.1;Name=WP_000205695.1;gbkey=CDS;gene=wcaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461060.1;locus_tag=CFSAN001082_RS27315;product=colanic acid biosynthesis glycosyltransferase WcaA;protein_id=WP_000205695.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	11949	14108	.	-	.	ID=gene-CFSAN001082_RS27320;Name=wzc;gbkey=Gene;gene=wzc;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27320;old_locus_tag=CFSAN001082_03234
NZ_APAH01000048.1	Protein Homology	CDS	11949	14108	.	-	0	ID=cds-WP_023253848.1;Parent=gene-CFSAN001082_RS27320;Dbxref=GenBank:WP_023253848.1;Name=WP_023253848.1;Ontology_term=GO:0009103,GO:0016020;gbkey=CDS;gene=wzc;go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461061.1;locus_tag=CFSAN001082_RS27320;product=tyrosine-protein kinase Wzc;protein_id=WP_023253848.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	14105	14554	.	-	.	ID=gene-CFSAN001082_RS27325;Name=wzb;gbkey=Gene;gene=wzb;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27325;old_locus_tag=CFSAN001082_03239
NZ_APAH01000048.1	Protein Homology	CDS	14105	14554	.	-	0	ID=cds-WP_000482224.1;Parent=gene-CFSAN001082_RS27325;Dbxref=GenBank:WP_000482224.1;Name=WP_000482224.1;gbkey=CDS;gene=wzb;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461062.1;locus_tag=CFSAN001082_RS27325;product=low molecular weight protein-tyrosine-phosphatase Wzb;protein_id=WP_000482224.1;transl_table=11
NZ_APAH01000048.1	RefSeq	gene	14560	15699	.	-	.	ID=gene-CFSAN001082_RS27330;Name=CFSAN001082_RS27330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27330;old_locus_tag=CFSAN001082_03244
NZ_APAH01000048.1	Protein Homology	CDS	14560	15699	.	-	0	ID=cds-WP_000978077.1;Parent=gene-CFSAN001082_RS27330;Dbxref=GenBank:WP_000978077.1;Name=WP_000978077.1;Ontology_term=GO:0015774,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=polysaccharide transport|0015774||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461063.1;locus_tag=CFSAN001082_RS27330;product=polysaccharide export protein;protein_id=WP_000978077.1;transl_table=11
##sequence-region NZ_APAH01000049.1 1 5232
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000049.1	RefSeq	region	1	5232	.	+	.	ID=NZ_APAH01000049.1:1..5232;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000049.1	RefSeq	gene	184	984	.	+	.	ID=gene-CFSAN001082_RS27335;Name=mazG;gbkey=Gene;gene=mazG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27335;old_locus_tag=CFSAN001082_03249
NZ_APAH01000049.1	Protein Homology	CDS	184	984	.	+	0	ID=cds-WP_000210454.1;Parent=gene-CFSAN001082_RS27335;Dbxref=GenBank:WP_000210454.1;Name=WP_000210454.1;gbkey=CDS;gene=mazG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461875.1;locus_tag=CFSAN001082_RS27335;product=nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_000210454.1;transl_table=11
NZ_APAH01000049.1	RefSeq	gene	1212	2849	.	+	.	ID=gene-CFSAN001082_RS27340;Name=pyrG;gbkey=Gene;gene=pyrG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27340;old_locus_tag=CFSAN001082_03254
NZ_APAH01000049.1	Protein Homology	CDS	1212	2849	.	+	0	ID=cds-WP_000210861.1;Parent=gene-CFSAN001082_RS27340;Dbxref=GenBank:WP_000210861.1;Name=WP_000210861.1;Ontology_term=GO:0006221,GO:0003883;gbkey=CDS;gene=pyrG;go_function=CTP synthase activity|0003883||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130912.1;locus_tag=CFSAN001082_RS27340;product=glutamine hydrolyzing CTP synthase;protein_id=WP_000210861.1;transl_table=11
NZ_APAH01000049.1	RefSeq	gene	2932	4230	.	+	.	ID=gene-CFSAN001082_RS27345;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27345;old_locus_tag=CFSAN001082_03259
NZ_APAH01000049.1	Protein Homology	CDS	2932	4230	.	+	0	ID=cds-WP_000036734.1;Parent=gene-CFSAN001082_RS27345;Dbxref=GenBank:WP_000036734.1;Name=WP_000036734.1;Ontology_term=GO:0006096,GO:0000287,GO:0004634,GO:0000015;gbkey=CDS;gene=eno;go_component=phosphopyruvate hydratase complex|0000015||IEA;go_function=magnesium ion binding|0000287||IEA,phosphopyruvate hydratase activity|0004634||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020456663.1;locus_tag=CFSAN001082_RS27345;product=phosphopyruvate hydratase;protein_id=WP_000036734.1;transl_table=11
NZ_APAH01000049.1	RefSeq	gene	4366	5037	.	+	.	ID=gene-CFSAN001082_RS27350;Name=queE;gbkey=Gene;gene=queE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27350;old_locus_tag=CFSAN001082_03264
NZ_APAH01000049.1	Protein Homology	CDS	4366	5037	.	+	0	ID=cds-WP_023253849.1;Parent=gene-CFSAN001082_RS27350;Dbxref=GenBank:WP_023253849.1;Name=WP_023253849.1;Ontology_term=GO:0006400,GO:0051539,GO:1904047;gbkey=CDS;gene=queE;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001199960.1;locus_tag=CFSAN001082_RS27350;product=7-carboxy-7-deazaguanine synthase QueE;protein_id=WP_023253849.1;transl_table=11
##sequence-region NZ_APAH01000050.1 1 5628
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000050.1	RefSeq	region	1	5628	.	+	.	ID=NZ_APAH01000050.1:1..5628;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000050.1	RefSeq	gene	1	5574	.	+	.	ID=gene-CFSAN001082_RS27355;Name=CFSAN001082_RS27355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27355;old_locus_tag=CFSAN001082_03269;partial=true;start_range=.,1
NZ_APAH01000050.1	Protein Homology	CDS	1	5574	.	+	0	ID=cds-WP_023253850.1;Parent=gene-CFSAN001082_RS27355;Dbxref=GenBank:WP_023253850.1;Name=WP_023253850.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001169948.1;locus_tag=CFSAN001082_RS27355;partial=true;product=autotransporter domain-containing protein;protein_id=WP_023253850.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000051.1 1 7420
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000051.1	RefSeq	region	1	7420	.	+	.	ID=NZ_APAH01000051.1:1..7420;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000051.1	RefSeq	gene	209	541	.	+	.	ID=gene-CFSAN001082_RS27360;Name=symE;gbkey=Gene;gene=symE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27360;old_locus_tag=CFSAN001082_03274
NZ_APAH01000051.1	Protein Homology	CDS	209	541	.	+	0	ID=cds-WP_001651423.1;Parent=gene-CFSAN001082_RS27360;Dbxref=GenBank:WP_001651423.1;Name=WP_001651423.1;gbkey=CDS;gene=symE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016149499.1;locus_tag=CFSAN001082_RS27360;product=endoribonuclease SymE;protein_id=WP_001651423.1;transl_table=11
NZ_APAH01000051.1	RefSeq	gene	615	1316	.	+	.	ID=gene-CFSAN001082_RS27365;Name=CFSAN001082_RS27365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27365;old_locus_tag=CFSAN001082_03279
NZ_APAH01000051.1	Protein Homology	CDS	615	1316	.	+	0	ID=cds-WP_023253851.1;Parent=gene-CFSAN001082_RS27365;Dbxref=GenBank:WP_023253851.1;Name=WP_023253851.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463381.1;locus_tag=CFSAN001082_RS27365;product=hypothetical protein;protein_id=WP_023253851.1;transl_table=11
NZ_APAH01000051.1	RefSeq	gene	1391	1555	.	-	.	ID=gene-CFSAN001082_RS27370;Name=yjiS;gbkey=Gene;gene=yjiS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27370;old_locus_tag=CFSAN001082_03284
NZ_APAH01000051.1	Protein Homology	CDS	1391	1555	.	-	0	ID=cds-WP_000397917.1;Parent=gene-CFSAN001082_RS27370;Dbxref=GenBank:WP_000397917.1;Name=WP_000397917.1;gbkey=CDS;gene=yjiS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463380.1;locus_tag=CFSAN001082_RS27370;product=DUF1127 domain-containing protein YjiS;protein_id=WP_000397917.1;transl_table=11
NZ_APAH01000051.1	RefSeq	gene	1522	1665	.	+	.	ID=gene-CFSAN001082_RS0122910;Name=CFSAN001082_RS0122910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0122910
NZ_APAH01000051.1	Protein Homology	CDS	1522	1665	.	+	0	ID=cds-WP_001541460.1;Parent=gene-CFSAN001082_RS0122910;Dbxref=GenBank:WP_001541460.1;Name=WP_001541460.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463379.1;locus_tag=CFSAN001082_RS0122910;product=hypothetical protein;protein_id=WP_001541460.1;transl_table=11
NZ_APAH01000051.1	RefSeq	gene	1760	3130	.	-	.	ID=gene-CFSAN001082_RS27375;Name=CFSAN001082_RS27375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27375;old_locus_tag=CFSAN001082_03289
NZ_APAH01000051.1	Protein Homology	CDS	1760	3130	.	-	0	ID=cds-WP_023253852.1;Parent=gene-CFSAN001082_RS27375;Dbxref=GenBank:WP_023253852.1;Name=WP_023253852.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463378.1;locus_tag=CFSAN001082_RS27375;product=NAD-dependent succinate-semialdehyde dehydrogenase;protein_id=WP_023253852.1;transl_table=11
NZ_APAH01000051.1	RefSeq	gene	3311	4252	.	-	.	ID=gene-CFSAN001082_RS27380;Name=CFSAN001082_RS27380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27380;old_locus_tag=CFSAN001082_03299
NZ_APAH01000051.1	Protein Homology	CDS	3311	4252	.	-	0	ID=cds-WP_023253854.1;Parent=gene-CFSAN001082_RS27380;Dbxref=GenBank:WP_023253854.1;Name=WP_023253854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012548938.1;locus_tag=CFSAN001082_RS27380;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_023253854.1;transl_table=11
NZ_APAH01000051.1	RefSeq	gene	4731	5972	.	+	.	ID=gene-CFSAN001082_RS27385;Name=mdtM;gbkey=Gene;gene=mdtM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27385;old_locus_tag=CFSAN001082_03304
NZ_APAH01000051.1	Protein Homology	CDS	4731	5972	.	+	0	ID=cds-WP_023253855.1;Parent=gene-CFSAN001082_RS27385;Dbxref=GenBank:WP_023253855.1;Name=WP_023253855.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mdtM;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463376.1;locus_tag=CFSAN001082_RS27385;product=multidrug efflux MFS transporter MdtM;protein_id=WP_023253855.1;transl_table=11
NZ_APAH01000051.1	RefSeq	gene	6059	7330	.	+	.	ID=gene-CFSAN001082_RS27390;Name=CFSAN001082_RS27390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27390;old_locus_tag=CFSAN001082_03309
NZ_APAH01000051.1	Protein Homology	CDS	6059	7330	.	+	0	ID=cds-WP_001033033.1;Parent=gene-CFSAN001082_RS27390;Dbxref=GenBank:WP_001033033.1;Name=WP_001033033.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463375.1;locus_tag=CFSAN001082_RS27390;product=DUF445 domain-containing protein;protein_id=WP_001033033.1;transl_table=11
##sequence-region NZ_APAH01000052.1 1 11183
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000052.1	RefSeq	region	1	11183	.	+	.	ID=NZ_APAH01000052.1:1..11183;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000052.1	RefSeq	gene	1	113	.	-	.	ID=gene-CFSAN001082_RS27395;Name=CFSAN001082_RS27395;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS27395;old_locus_tag=CFSAN001082_r03361;partial=true;start_range=.,1
NZ_APAH01000052.1	cmsearch	rRNA	1	113	.	-	.	ID=rna-CFSAN001082_RS27395;Parent=gene-CFSAN001082_RS27395;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS27395;partial=true;product=16S ribosomal RNA;start_range=.,1
NZ_APAH01000052.1	cmsearch	exon	1	113	.	-	.	ID=exon-CFSAN001082_RS27395-1;Parent=rna-CFSAN001082_RS27395;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS27395;partial=true;product=16S ribosomal RNA;start_range=.,1
NZ_APAH01000052.1	RefSeq	gene	569	3142	.	-	.	ID=gene-CFSAN001082_RS27400;Name=clpB;gbkey=Gene;gene=clpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27400;old_locus_tag=CFSAN001082_03314
NZ_APAH01000052.1	Protein Homology	CDS	569	3142	.	-	0	ID=cds-WP_001235092.1;Parent=gene-CFSAN001082_RS27400;Dbxref=GenBank:WP_001235092.1;Name=WP_001235092.1;Ontology_term=GO:0009408,GO:0042026,GO:0005524,GO:0016887;gbkey=CDS;gene=clpB;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=response to heat|0009408||IEA,protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002461515.1;locus_tag=CFSAN001082_RS27400;product=ATP-dependent chaperone ClpB;protein_id=WP_001235092.1;transl_table=11
NZ_APAH01000052.1	RefSeq	gene	3272	4003	.	-	.	ID=gene-CFSAN001082_RS27405;Name=yfiH;gbkey=Gene;gene=yfiH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27405;old_locus_tag=CFSAN001082_03319
NZ_APAH01000052.1	Protein Homology	CDS	3272	4003	.	-	0	ID=cds-WP_000992639.1;Parent=gene-CFSAN001082_RS27405;Dbxref=GenBank:WP_000992639.1;Name=WP_000992639.1;Ontology_term=GO:0004000,GO:0004731,GO:0042803;gbkey=CDS;gene=yfiH;go_function=adenosine deaminase activity|0004000||IEA,purine-nucleoside phosphorylase activity|0004731||IEA,protein homodimerization activity|0042803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461592.1;locus_tag=CFSAN001082_RS27405;product=purine nucleoside phosphorylase YfiH;protein_id=WP_000992639.1;transl_table=11
NZ_APAH01000052.1	RefSeq	gene	4000	4980	.	-	.	ID=gene-CFSAN001082_RS27410;Name=rluD;gbkey=Gene;gene=rluD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27410;old_locus_tag=CFSAN001082_03324
NZ_APAH01000052.1	Protein Homology	CDS	4000	4980	.	-	0	ID=cds-WP_000079130.1;Parent=gene-CFSAN001082_RS27410;Dbxref=GenBank:WP_000079130.1;Name=WP_000079130.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=rluD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017383977.1;locus_tag=CFSAN001082_RS27410;product=23S rRNA pseudouridine(1911/1915/1917) synthase RluD;protein_id=WP_000079130.1;transl_table=11
NZ_APAH01000052.1	RefSeq	gene	5112	5849	.	+	.	ID=gene-CFSAN001082_RS27415;Name=bamD;gbkey=Gene;gene=bamD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27415;old_locus_tag=CFSAN001082_03329
NZ_APAH01000052.1	Protein Homology	CDS	5112	5849	.	+	0	ID=cds-WP_000197660.1;Parent=gene-CFSAN001082_RS27415;Dbxref=GenBank:WP_000197660.1;Name=WP_000197660.1;gbkey=CDS;gene=bamD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461594.1;locus_tag=CFSAN001082_RS27415;product=outer membrane protein assembly factor BamD;protein_id=WP_000197660.1;transl_table=11
NZ_APAH01000052.1	RefSeq	gene	6121	6459	.	+	.	ID=gene-CFSAN001082_RS27420;Name=raiA;gbkey=Gene;gene=raiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27420;old_locus_tag=CFSAN001082_03334
NZ_APAH01000052.1	Protein Homology	CDS	6121	6459	.	+	0	ID=cds-WP_000178449.1;Parent=gene-CFSAN001082_RS27420;Dbxref=GenBank:WP_000178449.1;Name=WP_000178449.1;gbkey=CDS;gene=raiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461595.1;locus_tag=CFSAN001082_RS27420;product=ribosome-associated translation inhibitor RaiA;protein_id=WP_000178449.1;transl_table=11
NZ_APAH01000052.1	cmsearch	sequence_feature	6562	6687	.	+	.	ID=id-NZ_APAH01000052.1:6562..6687;Dbxref=RFAM:RF01859;Note=Phe leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_APAH01000052.1	RefSeq	gene	6563	6610	.	+	.	ID=gene-CFSAN001082_RS48140;Name=pheL;gbkey=Gene;gene=pheL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48140
NZ_APAH01000052.1	Protein Homology	CDS	6563	6610	.	+	0	ID=cds-WP_010989056.1;Parent=gene-CFSAN001082_RS48140;Dbxref=GenBank:WP_010989056.1;Name=WP_010989056.1;Ontology_term=GO:0031556;gbkey=CDS;gene=pheL;go_process=transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_449055.1;locus_tag=CFSAN001082_RS48140;product=pheA operon leader peptide PheL;protein_id=WP_010989056.1;transl_table=11
NZ_APAH01000052.1	RefSeq	gene	6710	7870	.	+	.	ID=gene-CFSAN001082_RS27425;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27425;old_locus_tag=CFSAN001082_03339
NZ_APAH01000052.1	Protein Homology	CDS	6710	7870	.	+	0	ID=cds-WP_001619571.1;Parent=gene-CFSAN001082_RS27425;Dbxref=GenBank:WP_001619571.1;Name=WP_001619571.1;Ontology_term=GO:0009094,GO:0046417,GO:0004106,GO:0004664;gbkey=CDS;gene=pheA;go_function=chorismate mutase activity|0004106||IEA,prephenate dehydratase activity|0004664||IEA;go_process=L-phenylalanine biosynthetic process|0009094||IEA,chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461597.1;locus_tag=CFSAN001082_RS27425;product=bifunctional chorismate mutase/prephenate dehydratase;protein_id=WP_001619571.1;transl_table=11
NZ_APAH01000052.1	RefSeq	gene	7831	8739	.	-	.	ID=gene-CFSAN001082_RS27430;Name=CFSAN001082_RS27430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27430;old_locus_tag=CFSAN001082_03344
NZ_APAH01000052.1	Protein Homology	CDS	7831	8739	.	-	0	ID=cds-WP_023253856.1;Parent=gene-CFSAN001082_RS27430;Dbxref=GenBank:WP_023253856.1;Name=WP_023253856.1;Ontology_term=GO:0005509,GO:0016787,GO:0046872;gbkey=CDS;go_function=calcium ion binding|0005509||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461598.1;locus_tag=CFSAN001082_RS27430;product=SMP-30/gluconolactonase/LRE family protein;protein_id=WP_023253856.1;transl_table=11
NZ_APAH01000052.1	RefSeq	gene	8797	9918	.	-	.	ID=gene-CFSAN001082_RS27435;Name=tyrA;gbkey=Gene;gene=tyrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27435;old_locus_tag=CFSAN001082_03349
NZ_APAH01000052.1	Protein Homology	CDS	8797	9918	.	-	0	ID=cds-WP_023253857.1;Parent=gene-CFSAN001082_RS27435;Dbxref=GenBank:WP_023253857.1;Name=WP_023253857.1;Ontology_term=GO:0006571,GO:0046417,GO:0004106,GO:0004665,GO:0008977;gbkey=CDS;gene=tyrA;go_function=chorismate mutase activity|0004106||IEA,prephenate dehydrogenase (NADP+) activity|0004665||IEA,prephenate dehydrogenase (NAD+) activity|0008977||IEA;go_process=tyrosine biosynthetic process|0006571||IEA,chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461599.1;locus_tag=CFSAN001082_RS27435;product=bifunctional chorismate mutase/prephenate dehydrogenase;protein_id=WP_023253857.1;transl_table=11
NZ_APAH01000052.1	RefSeq	gene	9928	10998	.	-	.	ID=gene-CFSAN001082_RS27440;Name=aroF;gbkey=Gene;gene=aroF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27440;old_locus_tag=CFSAN001082_03354
NZ_APAH01000052.1	Protein Homology	CDS	9928	10998	.	-	0	ID=cds-WP_001168062.1;Parent=gene-CFSAN001082_RS27440;Dbxref=GenBank:WP_001168062.1;Name=WP_001168062.1;gbkey=CDS;gene=aroF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461600.1;locus_tag=CFSAN001082_RS27440;product=3-deoxy-7-phosphoheptulonate synthase AroF;protein_id=WP_001168062.1;transl_table=11
##sequence-region NZ_APAH01000053.1 1 3305
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000053.1	RefSeq	region	1	3305	.	+	.	ID=NZ_APAH01000053.1:1..3305;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000053.1	RefSeq	gene	89	1057	.	+	.	ID=gene-CFSAN001082_RS27445;Name=manX;gbkey=Gene;gene=manX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27445;old_locus_tag=CFSAN001082_03361
NZ_APAH01000053.1	Protein Homology	CDS	89	1057	.	+	0	ID=cds-WP_000150523.1;Parent=gene-CFSAN001082_RS27445;Dbxref=GenBank:WP_000150523.1;Name=WP_000150523.1;Ontology_term=GO:0009401,GO:0008982;gbkey=CDS;gene=manX;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460786.1;locus_tag=CFSAN001082_RS27445;product=PTS mannose transporter subunit IIAB;protein_id=WP_000150523.1;transl_table=11
NZ_APAH01000053.1	RefSeq	gene	1110	1910	.	+	.	ID=gene-CFSAN001082_RS27450;Name=manY;gbkey=Gene;gene=manY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27450;old_locus_tag=CFSAN001082_03366
NZ_APAH01000053.1	Protein Homology	CDS	1110	1910	.	+	0	ID=cds-WP_000406918.1;Parent=gene-CFSAN001082_RS27450;Dbxref=GenBank:WP_000406918.1;Name=WP_000406918.1;gbkey=CDS;gene=manY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002910918.1;locus_tag=CFSAN001082_RS27450;product=PTS mannose transporter subunit IIC;protein_id=WP_000406918.1;transl_table=11
NZ_APAH01000053.1	RefSeq	gene	1923	2774	.	+	.	ID=gene-CFSAN001082_RS27455;Name=CFSAN001082_RS27455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27455;old_locus_tag=CFSAN001082_03371
NZ_APAH01000053.1	Protein Homology	CDS	1923	2774	.	+	0	ID=cds-WP_001518647.1;Parent=gene-CFSAN001082_RS27455;Dbxref=GenBank:WP_001518647.1;Name=WP_001518647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000228151.1;locus_tag=CFSAN001082_RS27455;product=PTS mannose transporter subunit IID;protein_id=WP_001518647.1;transl_table=11
NZ_APAH01000053.1	RefSeq	gene	2833	3291	.	+	.	ID=gene-CFSAN001082_RS27460;Name=CFSAN001082_RS27460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27460;old_locus_tag=CFSAN001082_03376
NZ_APAH01000053.1	Protein Homology	CDS	2833	3291	.	+	0	ID=cds-WP_023185511.1;Parent=gene-CFSAN001082_RS27460;Dbxref=GenBank:WP_023185511.1;Name=WP_023185511.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416334.1;locus_tag=CFSAN001082_RS27460;product=DUF986 family protein;protein_id=WP_023185511.1;transl_table=11
##sequence-region NZ_APAH01000054.1 1 3956
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000054.1	RefSeq	region	1	3956	.	+	.	ID=NZ_APAH01000054.1:1..3956;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000054.1	RefSeq	gene	1	569	.	-	.	ID=gene-CFSAN001082_RS27465;Name=rsmG;gbkey=Gene;gene=rsmG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27465;old_locus_tag=CFSAN001082_03381;partial=true;start_range=.,1
NZ_APAH01000054.1	Protein Homology	CDS	1	569	.	-	0	ID=cds-WP_024150244.1;Parent=gene-CFSAN001082_RS27465;Dbxref=GenBank:WP_024150244.1;Name=WP_024150244.1;Ontology_term=GO:0031167,GO:0046118,GO:0008168;gbkey=CDS;gene=rsmG;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA,7-methylguanosine biosynthetic process|0046118||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462772.3;locus_tag=CFSAN001082_RS27465;partial=true;product=16S rRNA (guanine(527)-N(7))-methyltransferase RsmG;protein_id=WP_024150244.1;start_range=.,1;transl_table=11
NZ_APAH01000054.1	RefSeq	gene	672	2561	.	-	.	ID=gene-CFSAN001082_RS27470;Name=mnmG;gbkey=Gene;gene=mnmG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27470;old_locus_tag=CFSAN001082_03386
NZ_APAH01000054.1	Protein Homology	CDS	672	2561	.	-	0	ID=cds-WP_000499872.1;Parent=gene-CFSAN001082_RS27470;Dbxref=GenBank:WP_000499872.1;Name=WP_000499872.1;Ontology_term=GO:0002098,GO:0008033;gbkey=CDS;gene=mnmG;go_process=tRNA wobble uridine modification|0002098||IEA,tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000499793.1;locus_tag=CFSAN001082_RS27470;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG;protein_id=WP_000499872.1;transl_table=11
NZ_APAH01000054.1	RefSeq	gene	2940	3383	.	-	.	ID=gene-CFSAN001082_RS27475;Name=mioC;gbkey=Gene;gene=mioC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27475;old_locus_tag=CFSAN001082_03391
NZ_APAH01000054.1	Protein Homology	CDS	2940	3383	.	-	0	ID=cds-WP_001518982.1;Parent=gene-CFSAN001082_RS27475;Dbxref=GenBank:WP_001518982.1;Name=WP_001518982.1;Ontology_term=GO:0010181;gbkey=CDS;gene=mioC;go_function=FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462774.1;locus_tag=CFSAN001082_RS27475;product=FMN-binding protein MioC;protein_id=WP_001518982.1;transl_table=11
NZ_APAH01000054.1	RefSeq	gene	3473	3931	.	-	.	ID=gene-CFSAN001082_RS27480;Name=asnC;gbkey=Gene;gene=asnC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27480;old_locus_tag=CFSAN001082_03396
NZ_APAH01000054.1	Protein Homology	CDS	3473	3931	.	-	0	ID=cds-WP_000433018.1;Parent=gene-CFSAN001082_RS27480;Dbxref=GenBank:WP_000433018.1;Name=WP_000433018.1;Ontology_term=GO:0043565;gbkey=CDS;gene=asnC;go_function=sequence-specific DNA binding|0043565||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462775.1;locus_tag=CFSAN001082_RS27480;product=transcriptional regulator AsnC;protein_id=WP_000433018.1;transl_table=11
##sequence-region NZ_APAH01000055.1 1 67306
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000055.1	RefSeq	region	1	67306	.	+	.	ID=NZ_APAH01000055.1:1..67306;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000055.1	RefSeq	gene	1	1773	.	+	.	ID=gene-CFSAN001082_RS27485;Name=CFSAN001082_RS27485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27485;old_locus_tag=CFSAN001082_03406;partial=true;start_range=.,1
NZ_APAH01000055.1	Protein Homology	CDS	1	1773	.	+	0	ID=cds-WP_031612634.1;Parent=gene-CFSAN001082_RS27485;Dbxref=GenBank:WP_031612634.1;Name=WP_031612634.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462979.1;locus_tag=CFSAN001082_RS27485;partial=true;product=aryl-sulfate sulfotransferase;protein_id=WP_031612634.1;start_range=.,1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	1973	2635	.	+	.	ID=gene-CFSAN001082_RS27490;Name=CFSAN001082_RS27490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27490;old_locus_tag=CFSAN001082_03411
NZ_APAH01000055.1	Protein Homology	CDS	1973	2635	.	+	0	ID=cds-WP_000792797.1;Parent=gene-CFSAN001082_RS27490;Dbxref=GenBank:WP_000792797.1;Name=WP_000792797.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462978.1;locus_tag=CFSAN001082_RS27490;product=TIGR02117 family protein;protein_id=WP_000792797.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	2679	2891	.	-	.	ID=gene-CFSAN001082_RS27495;Name=rpmE;gbkey=Gene;gene=rpmE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27495;old_locus_tag=CFSAN001082_03416
NZ_APAH01000055.1	Protein Homology	CDS	2679	2891	.	-	0	ID=cds-WP_000715284.1;Parent=gene-CFSAN001082_RS27495;Dbxref=GenBank:WP_000715284.1;Name=WP_000715284.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462977.1;locus_tag=CFSAN001082_RS27495;product=50S ribosomal protein L31;protein_id=WP_000715284.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	3095	5293	.	+	.	ID=gene-CFSAN001082_RS27500;Name=priA;gbkey=Gene;gene=priA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27500;old_locus_tag=CFSAN001082_03421
NZ_APAH01000055.1	Protein Homology	CDS	3095	5293	.	+	0	ID=cds-WP_023253860.1;Parent=gene-CFSAN001082_RS27500;Dbxref=GenBank:WP_023253860.1;Name=WP_023253860.1;gbkey=CDS;gene=priA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462976.1;locus_tag=CFSAN001082_RS27500;product=primosomal protein N';protein_id=WP_023253860.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	5448	6473	.	+	.	ID=gene-CFSAN001082_RS27505;Name=cytR;gbkey=Gene;gene=cytR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27505;old_locus_tag=CFSAN001082_03426
NZ_APAH01000055.1	Protein Homology	CDS	5448	6473	.	+	0	ID=cds-WP_000841337.1;Parent=gene-CFSAN001082_RS27505;Dbxref=GenBank:WP_000841337.1;Name=WP_000841337.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=cytR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462975.1;locus_tag=CFSAN001082_RS27505;product=DNA-binding transcriptional regulator CytR;protein_id=WP_000841337.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	6567	7541	.	+	.	ID=gene-CFSAN001082_RS27510;Name=ftsN;gbkey=Gene;gene=ftsN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27510;old_locus_tag=CFSAN001082_03431
NZ_APAH01000055.1	Protein Homology	CDS	6567	7541	.	+	0	ID=cds-WP_017441863.1;Parent=gene-CFSAN001082_RS27510;Dbxref=GenBank:WP_017441863.1;Name=WP_017441863.1;Ontology_term=GO:0042834;gbkey=CDS;gene=ftsN;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462974.1;locus_tag=CFSAN001082_RS27510;product=cell division protein FtsN;protein_id=WP_017441863.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	7633	8163	.	+	.	ID=gene-CFSAN001082_RS27515;Name=hslV;gbkey=Gene;gene=hslV;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27515;old_locus_tag=CFSAN001082_03436
NZ_APAH01000055.1	Protein Homology	CDS	7633	8163	.	+	0	ID=cds-WP_000208240.1;Parent=gene-CFSAN001082_RS27515;Dbxref=GenBank:WP_000208240.1;Name=WP_000208240.1;Ontology_term=GO:0051603,GO:0004298,GO:0009376;gbkey=CDS;gene=hslV;go_component=HslUV protease complex|0009376||IEA;go_function=threonine-type endopeptidase activity|0004298||IEA;go_process=proteolysis involved in protein catabolic process|0051603||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462973.1;locus_tag=CFSAN001082_RS27515;product=ATP-dependent protease subunit HslV;protein_id=WP_000208240.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	8173	9504	.	+	.	ID=gene-CFSAN001082_RS27520;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27520;old_locus_tag=CFSAN001082_03441
NZ_APAH01000055.1	Protein Homology	CDS	8173	9504	.	+	0	ID=cds-WP_001293360.1;Parent=gene-CFSAN001082_RS27520;Dbxref=GenBank:WP_001293360.1;Name=WP_001293360.1;Ontology_term=GO:0006508,GO:0004176,GO:0005524,GO:0009376;gbkey=CDS;gene=hslU;go_component=HslUV protease complex|0009376||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,ATP binding|0005524||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019841241.1;locus_tag=CFSAN001082_RS27520;product=HslU--HslV peptidase ATPase subunit;protein_id=WP_001293360.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	9571	10500	.	+	.	ID=gene-CFSAN001082_RS27525;Name=menA;gbkey=Gene;gene=menA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27525;old_locus_tag=CFSAN001082_03446
NZ_APAH01000055.1	Protein Homology	CDS	9571	10500	.	+	0	ID=cds-WP_000139639.1;Parent=gene-CFSAN001082_RS27525;Dbxref=GenBank:WP_000139639.1;Name=WP_000139639.1;gbkey=CDS;gene=menA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462971.1;locus_tag=CFSAN001082_RS27525;product=1%2C4-dihydroxy-2-naphthoate polyprenyltransferase;protein_id=WP_000139639.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	10593	11078	.	+	.	ID=gene-CFSAN001082_RS27530;Name=rraA;gbkey=Gene;gene=rraA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27530;old_locus_tag=CFSAN001082_03451
NZ_APAH01000055.1	Protein Homology	CDS	10593	11078	.	+	0	ID=cds-WP_000872918.1;Parent=gene-CFSAN001082_RS27530;Dbxref=GenBank:WP_000872918.1;Name=WP_000872918.1;Ontology_term=GO:0051252,GO:0008428;gbkey=CDS;gene=rraA;go_function=ribonuclease inhibitor activity|0008428||IEA;go_process=regulation of RNA metabolic process|0051252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001392924.1;locus_tag=CFSAN001082_RS27530;product=ribonuclease E activity regulator RraA;protein_id=WP_000872918.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	11310	11549	.	-	.	ID=gene-CFSAN001082_RS27535;Name=zapB;gbkey=Gene;gene=zapB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27535;old_locus_tag=CFSAN001082_03456
NZ_APAH01000055.1	Protein Homology	CDS	11310	11549	.	-	0	ID=cds-WP_000051370.1;Parent=gene-CFSAN001082_RS27535;Dbxref=GenBank:WP_000051370.1;Name=WP_000051370.1;gbkey=CDS;gene=zapB;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005229475.1;locus_tag=CFSAN001082_RS27535;product=septal ring assembly protein ZapB;protein_id=WP_000051370.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	11948	12793	.	+	.	ID=gene-CFSAN001082_RS27540;Name=CFSAN001082_RS27540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27540;old_locus_tag=CFSAN001082_03461
NZ_APAH01000055.1	Protein Homology	CDS	11948	12793	.	+	0	ID=cds-WP_000084285.1;Parent=gene-CFSAN001082_RS27540;Dbxref=GenBank:WP_000084285.1;Name=WP_000084285.1;Ontology_term=GO:0055085,GO:0015267;gbkey=CDS;go_function=channel activity|0015267||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462968.1;locus_tag=CFSAN001082_RS27540;product=MIP/aquaporin family protein;protein_id=WP_000084285.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	12814	14322	.	+	.	ID=gene-CFSAN001082_RS27545;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27545;old_locus_tag=CFSAN001082_03466
NZ_APAH01000055.1	Protein Homology	CDS	12814	14322	.	+	0	ID=cds-WP_000136811.1;Parent=gene-CFSAN001082_RS27545;Dbxref=GenBank:WP_000136811.1;Name=WP_000136811.1;Ontology_term=GO:0006072,GO:0004370;gbkey=CDS;gene=glpK;go_function=glycerol kinase activity|0004370||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462967.1;locus_tag=CFSAN001082_RS27545;product=glycerol kinase GlpK;protein_id=WP_000136811.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	14434	15444	.	+	.	ID=gene-CFSAN001082_RS27550;Name=glpX;gbkey=Gene;gene=glpX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27550;old_locus_tag=CFSAN001082_03471
NZ_APAH01000055.1	Protein Homology	CDS	14434	15444	.	+	0	ID=cds-WP_001250624.1;Parent=gene-CFSAN001082_RS27550;Dbxref=GenBank:WP_001250624.1;Name=WP_001250624.1;Ontology_term=GO:0006071,GO:0006094,GO:0042132;gbkey=CDS;gene=glpX;go_function=fructose 1%2C6-bisphosphate 1-phosphatase activity|0042132||IEA;go_process=glycerol metabolic process|0006071||IEA,gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462966.1;locus_tag=CFSAN001082_RS27550;product=class II fructose-bisphosphatase;protein_id=WP_001250624.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	15541	16287	.	+	.	ID=gene-CFSAN001082_RS27555;Name=fpr;gbkey=Gene;gene=fpr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27555;old_locus_tag=CFSAN001082_03476
NZ_APAH01000055.1	Protein Homology	CDS	15541	16287	.	+	0	ID=cds-WP_000796304.1;Parent=gene-CFSAN001082_RS27555;Dbxref=GenBank:WP_000796304.1;Name=WP_000796304.1;Ontology_term=GO:0004324;gbkey=CDS;gene=fpr;go_function=ferredoxin-NADP+ reductase activity|0004324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462965.1;locus_tag=CFSAN001082_RS27555;product=ferredoxin--NADP(+) reductase;protein_id=WP_000796304.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	16394	16822	.	-	.	ID=gene-CFSAN001082_RS27560;Name=CFSAN001082_RS27560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27560;old_locus_tag=CFSAN001082_03481
NZ_APAH01000055.1	Protein Homology	CDS	16394	16822	.	-	0	ID=cds-WP_000155237.1;Parent=gene-CFSAN001082_RS27560;Dbxref=GenBank:WP_000155237.1;Name=WP_000155237.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462964.1;locus_tag=CFSAN001082_RS27560;product=DUF805 domain-containing protein;protein_id=WP_000155237.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	16923	17519	.	+	.	ID=gene-CFSAN001082_RS27565;Name=CFSAN001082_RS27565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27565;old_locus_tag=CFSAN001082_03486
NZ_APAH01000055.1	Protein Homology	CDS	16923	17519	.	+	0	ID=cds-WP_000802241.1;Parent=gene-CFSAN001082_RS27565;Dbxref=GenBank:WP_000802241.1;Name=WP_000802241.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462963.1;locus_tag=CFSAN001082_RS27565;product=YiiQ family protein;protein_id=WP_000802241.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	17632	18399	.	+	.	ID=gene-CFSAN001082_RS27570;Name=tpiA;gbkey=Gene;gene=tpiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27570;old_locus_tag=CFSAN001082_03491
NZ_APAH01000055.1	Protein Homology	CDS	17632	18399	.	+	0	ID=cds-WP_017441865.1;Parent=gene-CFSAN001082_RS27570;Dbxref=GenBank:WP_017441865.1;Name=WP_017441865.1;Ontology_term=GO:0006096,GO:0004807;gbkey=CDS;gene=tpiA;go_function=triose-phosphate isomerase activity|0004807||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462962.1;locus_tag=CFSAN001082_RS27570;product=triose-phosphate isomerase;protein_id=WP_017441865.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	18509	19813	.	-	.	ID=gene-CFSAN001082_RS27575;Name=CFSAN001082_RS27575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27575;old_locus_tag=CFSAN001082_03496
NZ_APAH01000055.1	Protein Homology	CDS	18509	19813	.	-	0	ID=cds-WP_023253861.1;Parent=gene-CFSAN001082_RS27575;Dbxref=GenBank:WP_023253861.1;Name=WP_023253861.1;Ontology_term=GO:0006811,GO:0055085,GO:0015293,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA,transmembrane transporter activity|0022857||IEA;go_process=monoatomic ion transport|0006811||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005229472.1;locus_tag=CFSAN001082_RS27575;product=SLC13 family permease;protein_id=WP_023253861.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	19911	20633	.	-	.	ID=gene-CFSAN001082_RS27580;Name=CFSAN001082_RS27580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27580;old_locus_tag=CFSAN001082_03501
NZ_APAH01000055.1	Protein Homology	CDS	19911	20633	.	-	0	ID=cds-WP_001535809.1;Parent=gene-CFSAN001082_RS27580;Dbxref=GenBank:WP_001535809.1;Name=WP_001535809.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462949.1;locus_tag=CFSAN001082_RS27580;product=GntR family transcriptional regulator;protein_id=WP_001535809.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	20696	21736	.	-	.	ID=gene-CFSAN001082_RS27585;Name=CFSAN001082_RS27585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27585;old_locus_tag=CFSAN001082_03506
NZ_APAH01000055.1	Protein Homology	CDS	20696	21736	.	-	0	ID=cds-WP_000557882.1;Parent=gene-CFSAN001082_RS27585;Dbxref=GenBank:WP_000557882.1;Name=WP_000557882.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462948.1;locus_tag=CFSAN001082_RS27585;product=ADP-ribosylglycohydrolase family protein;protein_id=WP_000557882.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	21746	22705	.	-	.	ID=gene-CFSAN001082_RS27590;Name=CFSAN001082_RS27590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27590;old_locus_tag=CFSAN001082_03511
NZ_APAH01000055.1	Protein Homology	CDS	21746	22705	.	-	0	ID=cds-WP_023253862.1;Parent=gene-CFSAN001082_RS27590;Dbxref=GenBank:WP_023253862.1;Name=WP_023253862.1;Ontology_term=GO:0016301;gbkey=CDS;go_function=kinase activity|0016301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462947.1;locus_tag=CFSAN001082_RS27590;product=aminoimidazole riboside kinase;protein_id=WP_023253862.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	22716	24050	.	-	.	ID=gene-CFSAN001082_RS27595;Name=CFSAN001082_RS27595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27595;old_locus_tag=CFSAN001082_03516
NZ_APAH01000055.1	Protein Homology	CDS	22716	24050	.	-	0	ID=cds-WP_000777314.1;Parent=gene-CFSAN001082_RS27595;Dbxref=GenBank:WP_000777314.1;Name=WP_000777314.1;Ontology_term=GO:0008643,GO:0055085,GO:0015293,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA,transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462946.1;locus_tag=CFSAN001082_RS27595;product=MFS transporter;protein_id=WP_000777314.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	24315	25070	.	-	.	ID=gene-CFSAN001082_RS27600;Name=CFSAN001082_RS27600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27600;old_locus_tag=CFSAN001082_03521
NZ_APAH01000055.1	Protein Homology	CDS	24315	25070	.	-	0	ID=cds-WP_000750762.1;Parent=gene-CFSAN001082_RS27600;Dbxref=GenBank:WP_000750762.1;Name=WP_000750762.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462945.1;locus_tag=CFSAN001082_RS27600;product=CDP-diacylglycerol diphosphatase;protein_id=WP_000750762.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	25171	26160	.	-	.	ID=gene-CFSAN001082_RS27605;Name=CFSAN001082_RS27605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27605;old_locus_tag=CFSAN001082_03526
NZ_APAH01000055.1	Protein Homology	CDS	25171	26160	.	-	0	ID=cds-WP_000758711.1;Parent=gene-CFSAN001082_RS27605;Dbxref=GenBank:WP_000758711.1;Name=WP_000758711.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133064.1;locus_tag=CFSAN001082_RS27605;product=sulfate ABC transporter substrate-binding protein;protein_id=WP_000758711.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	26364	27326	.	-	.	ID=gene-CFSAN001082_RS27610;Name=pfkA;gbkey=Gene;gene=pfkA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27610;old_locus_tag=CFSAN001082_03531
NZ_APAH01000055.1	Protein Homology	CDS	26364	27326	.	-	0	ID=cds-WP_000591793.1;Parent=gene-CFSAN001082_RS27610;Dbxref=GenBank:WP_000591793.1;Name=WP_000591793.1;Ontology_term=GO:0006002,GO:0006096,GO:0005524;gbkey=CDS;gene=pfkA;go_function=ATP binding|0005524||IEA;go_process=fructose 6-phosphate metabolic process|0006002||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014072359.1;locus_tag=CFSAN001082_RS27610;product=6-phosphofructokinase;protein_id=WP_000591793.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	27511	28413	.	-	.	ID=gene-CFSAN001082_RS27615;Name=fieF;gbkey=Gene;gene=fieF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27615;old_locus_tag=CFSAN001082_03536
NZ_APAH01000055.1	Protein Homology	CDS	27511	28413	.	-	0	ID=cds-WP_023253863.1;Parent=gene-CFSAN001082_RS27615;Dbxref=GenBank:WP_023253863.1;Name=WP_023253863.1;Note=FieF%2C a metal efflux transporter%2C is a member of the CDF (cation diffusion facilitator) family of transporters.;Ontology_term=GO:0006812,GO:0055085,GO:0008324,GO:0016020;gbkey=CDS;gene=fieF;go_component=membrane|0016020||IEA;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=monoatomic cation transport|0006812||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462942.1;locus_tag=CFSAN001082_RS27615;product=CDF family cation-efflux transporter FieF;protein_id=WP_023253863.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	28700	29107	.	+	.	ID=gene-CFSAN001082_RS27620;Name=CFSAN001082_RS27620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27620;old_locus_tag=CFSAN001082_03541
NZ_APAH01000055.1	Protein Homology	CDS	28700	29107	.	+	0	ID=cds-WP_023253864.1;Parent=gene-CFSAN001082_RS27620;Dbxref=GenBank:WP_023253864.1;Name=WP_023253864.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506499.1;locus_tag=CFSAN001082_RS27620;product=hypothetical protein;protein_id=WP_023253864.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	29158	29376	.	-	.	ID=gene-CFSAN001082_RS27625;Name=CFSAN001082_RS27625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27625;old_locus_tag=CFSAN001082_03546
NZ_APAH01000055.1	Protein Homology	CDS	29158	29376	.	-	0	ID=cds-WP_000468311.1;Parent=gene-CFSAN001082_RS27625;Dbxref=GenBank:WP_000468311.1;Name=WP_000468311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416586.1;locus_tag=CFSAN001082_RS27625;product=DNA-binding transcriptional regulator;protein_id=WP_000468311.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	29454	30623	.	-	.	ID=gene-CFSAN001082_RS27630;Name=CFSAN001082_RS27630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27630;old_locus_tag=CFSAN001082_03551
NZ_APAH01000055.1	Protein Homology	CDS	29454	30623	.	-	0	ID=cds-WP_023253865.1;Parent=gene-CFSAN001082_RS27630;Dbxref=GenBank:WP_023253865.1;Name=WP_023253865.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000627818.1;locus_tag=CFSAN001082_RS27630;product=phage late control D family protein;protein_id=WP_023253865.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	30620	31105	.	-	.	ID=gene-CFSAN001082_RS27635;Name=CFSAN001082_RS27635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27635;old_locus_tag=CFSAN001082_03556
NZ_APAH01000055.1	Protein Homology	CDS	30620	31105	.	-	0	ID=cds-WP_000978862.1;Parent=gene-CFSAN001082_RS27635;Dbxref=GenBank:WP_000978862.1;Name=WP_000978862.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000978862.1;locus_tag=CFSAN001082_RS27635;product=phage tail protein;protein_id=WP_000978862.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	31120	33561	.	-	.	ID=gene-CFSAN001082_RS27640;Name=CFSAN001082_RS27640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27640;old_locus_tag=CFSAN001082_03561
NZ_APAH01000055.1	Protein Homology	CDS	31120	33561	.	-	0	ID=cds-WP_023253866.1;Parent=gene-CFSAN001082_RS27640;Dbxref=GenBank:WP_023253866.1;Name=WP_023253866.1;Ontology_term=GO:0016032,GO:0005198;gbkey=CDS;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000069526.1;locus_tag=CFSAN001082_RS27640;product=phage tail tape measure protein;protein_id=WP_023253866.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	33554	33691	.	-	.	ID=gene-CFSAN001082_RS27645;Name=CFSAN001082_RS27645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27645;old_locus_tag=CFSAN001082_03566
NZ_APAH01000055.1	Protein Homology	CDS	33554	33691	.	-	0	ID=cds-WP_010835837.1;Parent=gene-CFSAN001082_RS27645;Dbxref=GenBank:WP_010835837.1;Name=WP_010835837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015959005.1;locus_tag=CFSAN001082_RS27645;product=GpE family phage tail protein;protein_id=WP_010835837.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	33706	34041	.	-	.	ID=gene-CFSAN001082_RS27650;Name=CFSAN001082_RS27650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27650;old_locus_tag=CFSAN001082_03571
NZ_APAH01000055.1	Protein Homology	CDS	33706	34041	.	-	0	ID=cds-WP_001029726.1;Parent=gene-CFSAN001082_RS27650;Dbxref=GenBank:WP_001029726.1;Name=WP_001029726.1;Ontology_term=GO:0098003;gbkey=CDS;go_process=viral tail assembly|0098003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015406359.1;locus_tag=CFSAN001082_RS27650;product=phage tail assembly protein;protein_id=WP_001029726.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	34104	34622	.	-	.	ID=gene-CFSAN001082_RS27655;Name=CFSAN001082_RS27655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27655;old_locus_tag=CFSAN001082_03576
NZ_APAH01000055.1	Protein Homology	CDS	34104	34622	.	-	0	ID=cds-WP_001207675.1;Parent=gene-CFSAN001082_RS27655;Dbxref=GenBank:WP_001207675.1;Name=WP_001207675.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006817465.1;locus_tag=CFSAN001082_RS27655;product=phage major tail tube protein;protein_id=WP_001207675.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	34638	35825	.	-	.	ID=gene-CFSAN001082_RS27660;Name=CFSAN001082_RS27660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27660;old_locus_tag=CFSAN001082_03581
NZ_APAH01000055.1	Protein Homology	CDS	34638	35825	.	-	0	ID=cds-WP_023253867.1;Parent=gene-CFSAN001082_RS27660;Dbxref=GenBank:WP_023253867.1;Name=WP_023253867.1;Ontology_term=GO:0099000,GO:0098027;gbkey=CDS;go_component=virus tail%2C sheath|0098027||IEA;go_process=symbiont genome ejection through host cell envelope%2C contractile tail mechanism|0099000||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016505045.1;locus_tag=CFSAN001082_RS27660;product=phage tail sheath protein;protein_id=WP_023253867.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	35960	36487	.	-	.	ID=gene-CFSAN001082_RS27665;Name=CFSAN001082_RS27665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27665;old_locus_tag=CFSAN001082_03586
NZ_APAH01000055.1	Protein Homology	CDS	35960	36487	.	-	0	ID=cds-WP_023253868.1;Parent=gene-CFSAN001082_RS27665;Dbxref=GenBank:WP_023253868.1;Name=WP_023253868.1;Ontology_term=GO:0098004;gbkey=CDS;go_process=virus tail fiber assembly|0098004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000972112.1;locus_tag=CFSAN001082_RS27665;product=tail fiber assembly protein;protein_id=WP_023253868.1;transl_table=11
NZ_APAH01000055.1	RefSeq	pseudogene	37228	37548	.	-	.	ID=gene-CFSAN001082_RS49150;Name=CFSAN001082_RS49150;end_range=37548,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49150;partial=true;pseudo=true;start_range=.,37228
NZ_APAH01000055.1	Protein Homology	CDS	37228	37548	.	-	0	ID=cds-CFSAN001082_RS49150;Parent=gene-CFSAN001082_RS49150;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=37548,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461186.1;locus_tag=CFSAN001082_RS49150;partial=true;product=hypothetical protein;pseudo=true;start_range=.,37228;transl_table=11
NZ_APAH01000055.1	RefSeq	pseudogene	37603	37662	.	-	.	ID=gene-CFSAN001082_RS49155;Name=CFSAN001082_RS49155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49155;partial=true;pseudo=true;start_range=.,37603
NZ_APAH01000055.1	Protein Homology	CDS	37603	37662	.	-	0	ID=cds-CFSAN001082_RS49155;Parent=gene-CFSAN001082_RS49155;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0019062,GO:0046718;gbkey=CDS;go_process=virion attachment to host cell|0019062||IEA,symbiont entry into host cell|0046718||IEA;inference=COORDINATES: protein motif:HMM:NF015371.6;locus_tag=CFSAN001082_RS49155;partial=true;product=tail fiber protein;pseudo=true;start_range=.,37603;transl_table=11
NZ_APAH01000055.1	RefSeq	pseudogene	37710	37779	.	-	.	ID=gene-CFSAN001082_RS49160;Name=CFSAN001082_RS49160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49160;partial=true;pseudo=true;start_range=.,37710
NZ_APAH01000055.1	Protein Homology	CDS	37710	37779	.	-	0	ID=cds-CFSAN001082_RS49160;Parent=gene-CFSAN001082_RS49160;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0019062,GO:0046718;gbkey=CDS;go_process=virion attachment to host cell|0019062||IEA,symbiont entry into host cell|0046718||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461186.1;locus_tag=CFSAN001082_RS49160;partial=true;product=tail fiber protein;pseudo=true;start_range=.,37710;transl_table=11
NZ_APAH01000055.1	RefSeq	pseudogene	37867	38439	.	-	.	ID=gene-CFSAN001082_RS49165;Name=CFSAN001082_RS49165;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49165;partial=true;pseudo=true;start_range=.,37867
NZ_APAH01000055.1	Protein Homology	CDS	37867	38439	.	-	0	ID=cds-CFSAN001082_RS49165;Parent=gene-CFSAN001082_RS49165;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0098024;gbkey=CDS;go_component=virus tail%2C fiber|0098024||IEA;inference=COORDINATES: protein motif:HMM:NF023985.6;locus_tag=CFSAN001082_RS49165;partial=true;product=phage tail protein;pseudo=true;start_range=.,37867;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	38450	38980	.	-	.	ID=gene-CFSAN001082_RS27675;Name=CFSAN001082_RS27675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27675;old_locus_tag=CFSAN001082_03596
NZ_APAH01000055.1	Protein Homology	CDS	38450	38980	.	-	0	ID=cds-WP_001000069.1;Parent=gene-CFSAN001082_RS27675;Dbxref=GenBank:WP_001000069.1;Name=WP_001000069.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001285325.1;locus_tag=CFSAN001082_RS27675;product=phage tail protein I;protein_id=WP_001000069.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	38973	39881	.	-	.	ID=gene-CFSAN001082_RS27680;Name=CFSAN001082_RS27680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27680;old_locus_tag=CFSAN001082_03601
NZ_APAH01000055.1	Protein Homology	CDS	38973	39881	.	-	0	ID=cds-WP_001728621.1;Parent=gene-CFSAN001082_RS27680;Dbxref=GenBank:WP_001728621.1;Name=WP_001728621.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000246670.1;locus_tag=CFSAN001082_RS27680;product=baseplate assembly protein;protein_id=WP_001728621.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	39888	40235	.	-	.	ID=gene-CFSAN001082_RS27685;Name=CFSAN001082_RS27685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27685;old_locus_tag=CFSAN001082_03606
NZ_APAH01000055.1	Protein Homology	CDS	39888	40235	.	-	0	ID=cds-WP_023253870.1;Parent=gene-CFSAN001082_RS27685;Dbxref=GenBank:WP_023253870.1;Name=WP_023253870.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001550203.1;locus_tag=CFSAN001082_RS27685;product=GPW/gp25 family protein;protein_id=WP_023253870.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	40232	40873	.	-	.	ID=gene-CFSAN001082_RS27690;Name=CFSAN001082_RS27690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27690;old_locus_tag=CFSAN001082_03611
NZ_APAH01000055.1	Protein Homology	CDS	40232	40873	.	-	0	ID=cds-WP_023253871.1;Parent=gene-CFSAN001082_RS27690;Dbxref=GenBank:WP_023253871.1;Name=WP_023253871.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016505039.1;locus_tag=CFSAN001082_RS27690;product=phage baseplate assembly protein V;protein_id=WP_023253871.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	40942	41391	.	-	.	ID=gene-CFSAN001082_RS27695;Name=CFSAN001082_RS27695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27695;old_locus_tag=CFSAN001082_03616
NZ_APAH01000055.1	Protein Homology	CDS	40942	41391	.	-	0	ID=cds-WP_023253872.1;Parent=gene-CFSAN001082_RS27695;Dbxref=GenBank:WP_023253872.1;Name=WP_023253872.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015406368.1;locus_tag=CFSAN001082_RS27695;product=phage virion morphogenesis protein;protein_id=WP_023253872.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	41384	41851	.	-	.	ID=gene-CFSAN001082_RS27700;Name=CFSAN001082_RS27700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27700;old_locus_tag=CFSAN001082_03621
NZ_APAH01000055.1	Protein Homology	CDS	41384	41851	.	-	0	ID=cds-WP_023253873.1;Parent=gene-CFSAN001082_RS27700;Dbxref=GenBank:WP_023253873.1;Name=WP_023253873.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001416708.1;locus_tag=CFSAN001082_RS27700;product=phage tail protein;protein_id=WP_023253873.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	41814	42059	.	-	.	ID=gene-CFSAN001082_RS27705;Name=lysC;gbkey=Gene;gene=lysC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27705;old_locus_tag=CFSAN001082_03626
NZ_APAH01000055.1	Protein Homology	CDS	41814	42059	.	-	0	ID=cds-WP_232093674.1;Parent=gene-CFSAN001082_RS27705;Dbxref=GenBank:WP_232093674.1;Name=WP_232093674.1;Note=LysC is an Rz1-like component of a phage lytic system%2C substantially overlapping although not fully embedded in the gene for the Rz-like LysB component.;gbkey=CDS;gene=lysC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015703019.1;locus_tag=CFSAN001082_RS27705;product=Rz1-like lysis system protein LysC;protein_id=WP_232093674.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	41959	42372	.	-	.	ID=gene-CFSAN001082_RS27710;Name=lysB;gbkey=Gene;gene=lysB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27710;old_locus_tag=CFSAN001082_03631
NZ_APAH01000055.1	Protein Homology	CDS	41959	42372	.	-	0	ID=cds-WP_023253875.1;Parent=gene-CFSAN001082_RS27710;Dbxref=GenBank:WP_023253875.1;Name=WP_023253875.1;Note=The gene for this Rz-like phage lysis system protein may overlap extensively with the gene for the other spanin subunit%2C the Rz1-like protein in the outer membrane.;gbkey=CDS;gene=lysB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001550198.1;locus_tag=CFSAN001082_RS27710;product=Rz-like lysis system protein LysB;protein_id=WP_023253875.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	42369	42866	.	-	.	ID=gene-CFSAN001082_RS27715;Name=CFSAN001082_RS27715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27715;old_locus_tag=CFSAN001082_03636
NZ_APAH01000055.1	Protein Homology	CDS	42369	42866	.	-	0	ID=cds-WP_023253876.1;Parent=gene-CFSAN001082_RS27715;Dbxref=GenBank:WP_023253876.1;Name=WP_023253876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016235441.1;locus_tag=CFSAN001082_RS27715;product=glycoside hydrolase family 24 protein;protein_id=WP_023253876.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	42853	43149	.	-	.	ID=gene-CFSAN001082_RS27720;Name=CFSAN001082_RS27720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27720;old_locus_tag=CFSAN001082_03641
NZ_APAH01000055.1	Protein Homology	CDS	42853	43149	.	-	0	ID=cds-WP_001583825.1;Parent=gene-CFSAN001082_RS27720;Dbxref=GenBank:WP_001583825.1;Name=WP_001583825.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000134660.1;locus_tag=CFSAN001082_RS27720;product=phage holin family protein;protein_id=WP_001583825.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	43153	43356	.	-	.	ID=gene-CFSAN001082_RS27725;Name=CFSAN001082_RS27725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27725;old_locus_tag=CFSAN001082_03646
NZ_APAH01000055.1	Protein Homology	CDS	43153	43356	.	-	0	ID=cds-WP_010835754.1;Parent=gene-CFSAN001082_RS27725;Dbxref=GenBank:WP_010835754.1;Name=WP_010835754.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015973898.1;locus_tag=CFSAN001082_RS27725;product=tail protein X;protein_id=WP_010835754.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	43356	43862	.	-	.	ID=gene-CFSAN001082_RS27730;Name=CFSAN001082_RS27730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27730;old_locus_tag=CFSAN001082_03651
NZ_APAH01000055.1	Protein Homology	CDS	43356	43862	.	-	0	ID=cds-WP_001583823.1;Parent=gene-CFSAN001082_RS27730;Dbxref=GenBank:WP_001583823.1;Name=WP_001583823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000207472.1;locus_tag=CFSAN001082_RS27730;product=head completion/stabilization protein;protein_id=WP_001583823.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	43956	44705	.	-	.	ID=gene-CFSAN001082_RS27735;Name=CFSAN001082_RS27735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27735;old_locus_tag=CFSAN001082_03656
NZ_APAH01000055.1	Protein Homology	CDS	43956	44705	.	-	0	ID=cds-WP_023253877.1;Parent=gene-CFSAN001082_RS27735;Dbxref=GenBank:WP_023253877.1;Name=WP_023253877.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001526222.1;locus_tag=CFSAN001082_RS27735;product=terminase endonuclease subunit;protein_id=WP_023253877.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	44709	45776	.	-	.	ID=gene-CFSAN001082_RS27740;Name=CFSAN001082_RS27740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27740;old_locus_tag=CFSAN001082_03661
NZ_APAH01000055.1	Protein Homology	CDS	44709	45776	.	-	0	ID=cds-WP_023253878.1;Parent=gene-CFSAN001082_RS27740;Dbxref=GenBank:WP_023253878.1;Name=WP_023253878.1;Ontology_term=GO:0019069,GO:0005198,GO:0019028;gbkey=CDS;go_component=viral capsid|0019028||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral capsid assembly|0019069||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001550193.1;locus_tag=CFSAN001082_RS27740;product=phage major capsid protein%2C P2 family;protein_id=WP_023253878.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	45853	46707	.	-	.	ID=gene-CFSAN001082_RS27745;Name=CFSAN001082_RS27745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27745;old_locus_tag=CFSAN001082_03666
NZ_APAH01000055.1	Protein Homology	CDS	45853	46707	.	-	0	ID=cds-WP_001583819.1;Parent=gene-CFSAN001082_RS27745;Dbxref=GenBank:WP_001583819.1;Name=WP_001583819.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005228318.1;locus_tag=CFSAN001082_RS27745;product=GPO family capsid scaffolding protein;protein_id=WP_001583819.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	46873	48642	.	+	.	ID=gene-CFSAN001082_RS27750;Name=CFSAN001082_RS27750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27750;old_locus_tag=CFSAN001082_03671
NZ_APAH01000055.1	Protein Homology	CDS	46873	48642	.	+	0	ID=cds-WP_023253879.1;Parent=gene-CFSAN001082_RS27750;Dbxref=GenBank:WP_023253879.1;Name=WP_023253879.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001394637.1;locus_tag=CFSAN001082_RS27750;product=terminase ATPase subunit family protein;protein_id=WP_023253879.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	48642	49688	.	+	.	ID=gene-CFSAN001082_RS27755;Name=CFSAN001082_RS27755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27755;old_locus_tag=CFSAN001082_03676
NZ_APAH01000055.1	Protein Homology	CDS	48642	49688	.	+	0	ID=cds-WP_023253880.1;Parent=gene-CFSAN001082_RS27755;Dbxref=GenBank:WP_023253880.1;Name=WP_023253880.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001530896.1;locus_tag=CFSAN001082_RS27755;product=phage portal protein;protein_id=WP_023253880.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	50049	51692	.	-	.	ID=gene-CFSAN001082_RS27760;Name=CFSAN001082_RS27760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27760;old_locus_tag=CFSAN001082_03681
NZ_APAH01000055.1	Protein Homology	CDS	50049	51692	.	-	0	ID=cds-WP_023253881.1;Parent=gene-CFSAN001082_RS27760;Dbxref=GenBank:WP_023253881.1;Name=WP_023253881.1;Ontology_term=GO:0003676,GO:0008270,GO:0016818;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,zinc ion binding|0008270||IEA,hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001774097.1;locus_tag=CFSAN001082_RS27760;product=HIRAN domain-containing protein;protein_id=WP_023253881.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	51702	52253	.	-	.	ID=gene-CFSAN001082_RS27765;Name=CFSAN001082_RS27765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27765;old_locus_tag=CFSAN001082_03686
NZ_APAH01000055.1	Protein Homology	CDS	51702	52253	.	-	0	ID=cds-WP_001774096.1;Parent=gene-CFSAN001082_RS27765;Dbxref=GenBank:WP_001774096.1;Name=WP_001774096.1;Ontology_term=GO:0003676,GO:0008408;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001774096.1;locus_tag=CFSAN001082_RS27765;product=3'-5' exonuclease;protein_id=WP_001774096.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	52432	54714	.	-	.	ID=gene-CFSAN001082_RS27770;Name=CFSAN001082_RS27770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27770;old_locus_tag=CFSAN001082_03691
NZ_APAH01000055.1	Protein Homology	CDS	52432	54714	.	-	0	ID=cds-WP_024150245.1;Parent=gene-CFSAN001082_RS27770;Dbxref=GenBank:WP_024150245.1;Name=WP_024150245.1;Ontology_term=GO:0006260,GO:0004519;gbkey=CDS;go_function=endonuclease activity|0004519||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016505028.1;locus_tag=CFSAN001082_RS27770;product=replication endonuclease;protein_id=WP_024150245.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	54704	54979	.	-	.	ID=gene-CFSAN001082_RS27775;Name=CFSAN001082_RS27775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27775;old_locus_tag=CFSAN001082_03696
NZ_APAH01000055.1	Protein Homology	CDS	54704	54979	.	-	0	ID=cds-WP_000027647.1;Parent=gene-CFSAN001082_RS27775;Dbxref=GenBank:WP_000027647.1;Name=WP_000027647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000027668.1;locus_tag=CFSAN001082_RS27775;product=DUF5405 family protein;protein_id=WP_000027647.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	54976	55200	.	-	.	ID=gene-CFSAN001082_RS27780;Name=CFSAN001082_RS27780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27780;old_locus_tag=CFSAN001082_03701
NZ_APAH01000055.1	Protein Homology	CDS	54976	55200	.	-	0	ID=cds-WP_023253884.1;Parent=gene-CFSAN001082_RS27780;Dbxref=GenBank:WP_023253884.1;Name=WP_023253884.1;Ontology_term=GO:0008270;gbkey=CDS;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016242005.1;locus_tag=CFSAN001082_RS27780;product=TraR/DksA C4-type zinc finger protein;protein_id=WP_023253884.1;transl_table=11
NZ_APAH01000055.1	RefSeq	pseudogene	55205	55502	.	-	.	ID=gene-CFSAN001082_RS46550;Name=CFSAN001082_RS46550;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46550;pseudo=true
NZ_APAH01000055.1	Protein Homology	CDS	55205	55502	.	-	0	ID=cds-CFSAN001082_RS46550;Parent=gene-CFSAN001082_RS46550;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015462549.1;locus_tag=CFSAN001082_RS46550;product=DUF5405 family protein;pseudo=true;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	55502	55726	.	-	.	ID=gene-CFSAN001082_RS27785;Name=CFSAN001082_RS27785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27785;old_locus_tag=CFSAN001082_03716
NZ_APAH01000055.1	Protein Homology	CDS	55502	55726	.	-	0	ID=cds-WP_000557712.1;Parent=gene-CFSAN001082_RS27785;Dbxref=GenBank:WP_000557712.1;Name=WP_000557712.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016236090.1;locus_tag=CFSAN001082_RS27785;product=DUF2732 family protein;protein_id=WP_000557712.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	55790	56290	.	-	.	ID=gene-CFSAN001082_RS27790;Name=CFSAN001082_RS27790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27790;old_locus_tag=CFSAN001082_03721
NZ_APAH01000055.1	Protein Homology	CDS	55790	56290	.	-	0	ID=cds-WP_001670778.1;Parent=gene-CFSAN001082_RS27790;Dbxref=GenBank:WP_001670778.1;Name=WP_001670778.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441883.1;locus_tag=CFSAN001082_RS27790;product=hypothetical protein;protein_id=WP_001670778.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	56460	56732	.	-	.	ID=gene-CFSAN001082_RS27795;Name=CFSAN001082_RS27795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27795;old_locus_tag=CFSAN001082_03731
NZ_APAH01000055.1	Protein Homology	CDS	56460	56732	.	-	0	ID=cds-WP_001583792.1;Parent=gene-CFSAN001082_RS27795;Dbxref=GenBank:WP_001583792.1;Name=WP_001583792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001583792.1;locus_tag=CFSAN001082_RS27795;product=Cox family DNA-binding protein;protein_id=WP_001583792.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	56869	57162	.	+	.	ID=gene-CFSAN001082_RS27800;Name=CFSAN001082_RS27800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27800;old_locus_tag=CFSAN001082_03736
NZ_APAH01000055.1	Protein Homology	CDS	56869	57162	.	+	0	ID=cds-WP_001099751.1;Parent=gene-CFSAN001082_RS27800;Dbxref=GenBank:WP_001099751.1;Name=WP_001099751.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001099751.1;locus_tag=CFSAN001082_RS27800;product=helix-turn-helix domain-containing protein;protein_id=WP_001099751.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	57232	58212	.	+	.	ID=gene-CFSAN001082_RS27805;Name=CFSAN001082_RS27805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27805;old_locus_tag=CFSAN001082_03741
NZ_APAH01000055.1	Protein Homology	CDS	57232	58212	.	+	0	ID=cds-WP_000985251.1;Parent=gene-CFSAN001082_RS27805;Dbxref=GenBank:WP_000985251.1;Name=WP_000985251.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000985242.1;locus_tag=CFSAN001082_RS27805;product=phage integrase;protein_id=WP_000985251.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	58397	58897	.	-	.	ID=gene-CFSAN001082_RS27810;Name=cpxP;gbkey=Gene;gene=cpxP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27810;old_locus_tag=CFSAN001082_03746
NZ_APAH01000055.1	Protein Homology	CDS	58397	58897	.	-	0	ID=cds-WP_023253885.1;Parent=gene-CFSAN001082_RS27810;Dbxref=GenBank:WP_023253885.1;Name=WP_023253885.1;gbkey=CDS;gene=cpxP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462941.1;locus_tag=CFSAN001082_RS27810;product=cell-envelope stress modulator CpxP;protein_id=WP_023253885.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	59048	59746	.	+	.	ID=gene-CFSAN001082_RS27815;Name=cpxR;gbkey=Gene;gene=cpxR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27815;old_locus_tag=CFSAN001082_03751
NZ_APAH01000055.1	Protein Homology	CDS	59048	59746	.	+	0	ID=cds-WP_001033731.1;Parent=gene-CFSAN001082_RS27815;Dbxref=GenBank:WP_001033731.1;Name=WP_001033731.1;gbkey=CDS;gene=cpxR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001033718.1;locus_tag=CFSAN001082_RS27815;product=envelope stress response regulator transcription factor CpxR;protein_id=WP_001033731.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	59743	61116	.	+	.	ID=gene-CFSAN001082_RS27820;Name=cpxA;gbkey=Gene;gene=cpxA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27820;old_locus_tag=CFSAN001082_03756
NZ_APAH01000055.1	Protein Homology	CDS	59743	61116	.	+	0	ID=cds-WP_000580402.1;Parent=gene-CFSAN001082_RS27820;Dbxref=GenBank:WP_000580402.1;Name=WP_000580402.1;Ontology_term=GO:0007165,GO:0000155;gbkey=CDS;gene=cpxA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462939.1;locus_tag=CFSAN001082_RS27820;product=envelope stress sensor histidine kinase CpxA;protein_id=WP_000580402.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	61164	61367	.	-	.	ID=gene-CFSAN001082_RS27825;Name=CFSAN001082_RS27825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27825;old_locus_tag=CFSAN001082_03761
NZ_APAH01000055.1	Protein Homology	CDS	61164	61367	.	-	0	ID=cds-WP_000338672.1;Parent=gene-CFSAN001082_RS27825;Dbxref=GenBank:WP_000338672.1;Name=WP_000338672.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000338671.1;locus_tag=CFSAN001082_RS27825;product=hypothetical protein;protein_id=WP_000338672.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	61488	61883	.	-	.	ID=gene-CFSAN001082_RS27830;Name=CFSAN001082_RS27830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27830;old_locus_tag=CFSAN001082_03766
NZ_APAH01000055.1	Protein Homology	CDS	61488	61883	.	-	0	ID=cds-WP_000133442.1;Parent=gene-CFSAN001082_RS27830;Dbxref=GenBank:WP_000133442.1;Name=WP_000133442.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462938.1;locus_tag=CFSAN001082_RS27830;product=nuclear transport factor 2 family protein;protein_id=WP_000133442.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	61895	62584	.	-	.	ID=gene-CFSAN001082_RS27835;Name=yiiM;gbkey=Gene;gene=yiiM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27835;old_locus_tag=CFSAN001082_03771
NZ_APAH01000055.1	Protein Homology	CDS	61895	62584	.	-	0	ID=cds-WP_000559229.1;Parent=gene-CFSAN001082_RS27835;Dbxref=GenBank:WP_000559229.1;Name=WP_000559229.1;Ontology_term=GO:0003824,GO:0030151,GO:0030170;gbkey=CDS;gene=yiiM;go_function=catalytic activity|0003824||IEA,molybdenum ion binding|0030151||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000559227.1;locus_tag=CFSAN001082_RS27835;product=6-hydroxyaminopurine reductase;protein_id=WP_000559229.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	62654	63274	.	-	.	ID=gene-CFSAN001082_RS27840;Name=sodA;gbkey=Gene;gene=sodA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27840;old_locus_tag=CFSAN001082_03776
NZ_APAH01000055.1	Protein Homology	CDS	62654	63274	.	-	0	ID=cds-WP_000122632.1;Parent=gene-CFSAN001082_RS27840;Dbxref=GenBank:WP_000122632.1;Name=WP_000122632.1;Ontology_term=GO:0006801,GO:0004784;gbkey=CDS;gene=sodA;go_function=superoxide dismutase activity|0004784||IEA;go_process=superoxide metabolic process|0006801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010345169.1;locus_tag=CFSAN001082_RS27840;product=superoxide dismutase [Mn];protein_id=WP_000122632.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	63603	64586	.	+	.	ID=gene-CFSAN001082_RS27845;Name=CFSAN001082_RS27845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27845;old_locus_tag=CFSAN001082_03781
NZ_APAH01000055.1	Protein Homology	CDS	63603	64586	.	+	0	ID=cds-WP_000812816.1;Parent=gene-CFSAN001082_RS27845;Dbxref=GenBank:WP_000812816.1;Name=WP_000812816.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462935.1;locus_tag=CFSAN001082_RS27845;product=TRAP transporter substrate-binding protein;protein_id=WP_000812816.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	64605	65120	.	+	.	ID=gene-CFSAN001082_RS27850;Name=CFSAN001082_RS27850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27850;old_locus_tag=CFSAN001082_03786
NZ_APAH01000055.1	Protein Homology	CDS	64605	65120	.	+	0	ID=cds-WP_001091413.1;Parent=gene-CFSAN001082_RS27850;Dbxref=GenBank:WP_001091413.1;Name=WP_001091413.1;Ontology_term=GO:0015740,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=C4-dicarboxylate transport|0015740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462934.1;locus_tag=CFSAN001082_RS27850;product=TRAP transporter small permease;protein_id=WP_001091413.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	65113	66420	.	+	.	ID=gene-CFSAN001082_RS27855;Name=CFSAN001082_RS27855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27855;old_locus_tag=CFSAN001082_03791
NZ_APAH01000055.1	Protein Homology	CDS	65113	66420	.	+	0	ID=cds-WP_000566800.1;Parent=gene-CFSAN001082_RS27855;Dbxref=GenBank:WP_000566800.1;Name=WP_000566800.1;Ontology_term=GO:0008643,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462933.1;locus_tag=CFSAN001082_RS27855;product=TRAP transporter large permease;protein_id=WP_000566800.1;transl_table=11
NZ_APAH01000055.1	RefSeq	gene	66578	67261	.	-	.	ID=gene-CFSAN001082_RS27860;Name=CFSAN001082_RS27860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27860;old_locus_tag=CFSAN001082_03796
NZ_APAH01000055.1	Protein Homology	CDS	66578	67261	.	-	0	ID=cds-WP_000378721.1;Parent=gene-CFSAN001082_RS27860;Dbxref=GenBank:WP_000378721.1;Name=WP_000378721.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462932.3;locus_tag=CFSAN001082_RS27860;product=oligogalacturonate-specific porin KdgM family protein;protein_id=WP_000378721.1;transl_table=11
##sequence-region NZ_APAH01000056.1 1 273
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000056.1	RefSeq	region	1	273	.	+	.	ID=NZ_APAH01000056.1:1..273;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000056.1	RefSeq	gene	1	273	.	+	.	ID=gene-CFSAN001082_RS48515;Name=CFSAN001082_RS48515;end_range=273,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48515;old_locus_tag=CFSAN001082_03801;partial=true;start_range=.,1
NZ_APAH01000056.1	GeneMarkS-2+	CDS	1	273	.	+	0	ID=cds-WP_023253886.1;Parent=gene-CFSAN001082_RS48515;Dbxref=GenBank:WP_023253886.1;Name=WP_023253886.1;end_range=273,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48515;partial=true;product=hypothetical protein;protein_id=WP_023253886.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000057.1 1 207
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000057.1	RefSeq	region	1	207	.	+	.	ID=NZ_APAH01000057.1:1..207;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000058.1 1 20285
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000058.1	RefSeq	region	1	20285	.	+	.	ID=NZ_APAH01000058.1:1..20285;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000058.1	RefSeq	gene	158	1096	.	+	.	ID=gene-CFSAN001082_RS27865;Name=pgtE;gbkey=Gene;gene=pgtE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27865;old_locus_tag=CFSAN001082_03806
NZ_APAH01000058.1	Protein Homology	CDS	158	1096	.	+	0	ID=cds-WP_000716011.1;Parent=gene-CFSAN001082_RS27865;Dbxref=GenBank:WP_000716011.1;Name=WP_000716011.1;gbkey=CDS;gene=pgtE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461336.1;locus_tag=CFSAN001082_RS27865;product=omptin family outer membrane protease PgtE;protein_id=WP_000716011.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	1253	1327	.	-	.	ID=gene-CFSAN001082_RS27870;Name=CFSAN001082_RS27870;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS27870;old_locus_tag=CFSAN001082_t03908
NZ_APAH01000058.1	tRNAscan-SE	tRNA	1253	1327	.	-	.	ID=rna-CFSAN001082_RS27870;Parent=gene-CFSAN001082_RS27870;anticodon=(pos:complement(1292..1294));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS27870;product=tRNA-Arg
NZ_APAH01000058.1	tRNAscan-SE	exon	1253	1327	.	-	.	ID=exon-CFSAN001082_RS27870-1;Parent=rna-CFSAN001082_RS27870;anticodon=(pos:complement(1292..1294));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS27870;product=tRNA-Arg
NZ_APAH01000058.1	RefSeq	gene	1403	2344	.	-	.	ID=gene-CFSAN001082_RS27875;Name=CFSAN001082_RS27875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27875;old_locus_tag=CFSAN001082_03811
NZ_APAH01000058.1	Protein Homology	CDS	1403	2344	.	-	0	ID=cds-WP_000377772.1;Parent=gene-CFSAN001082_RS27875;Dbxref=GenBank:WP_000377772.1;Name=WP_000377772.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461335.1;locus_tag=CFSAN001082_RS27875;product=formate/nitrite transporter family protein;protein_id=WP_000377772.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	2633	3388	.	+	.	ID=gene-CFSAN001082_RS27880;Name=mlaA;gbkey=Gene;gene=mlaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27880;old_locus_tag=CFSAN001082_03816
NZ_APAH01000058.1	Protein Homology	CDS	2633	3388	.	+	0	ID=cds-WP_000776787.1;Parent=gene-CFSAN001082_RS27880;Dbxref=GenBank:WP_000776787.1;Name=WP_000776787.1;Ontology_term=GO:0016020;gbkey=CDS;gene=mlaA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461334.1;locus_tag=CFSAN001082_RS27880;product=phospholipid-binding lipoprotein MlaA;protein_id=WP_000776787.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	3449	4756	.	-	.	ID=gene-CFSAN001082_RS27885;Name=fadL;gbkey=Gene;gene=fadL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27885;old_locus_tag=CFSAN001082_03821
NZ_APAH01000058.1	Protein Homology	CDS	3449	4756	.	-	0	ID=cds-WP_001518618.1;Parent=gene-CFSAN001082_RS27885;Dbxref=GenBank:WP_001518618.1;Name=WP_001518618.1;gbkey=CDS;gene=fadL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416846.2;locus_tag=CFSAN001082_RS27885;product=long-chain fatty acid transporter FadL;protein_id=WP_001518618.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	5127	5411	.	+	.	ID=gene-CFSAN001082_RS27890;Name=CFSAN001082_RS27890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27890;old_locus_tag=CFSAN001082_03826
NZ_APAH01000058.1	Protein Homology	CDS	5127	5411	.	+	0	ID=cds-WP_000030904.1;Parent=gene-CFSAN001082_RS27890;Dbxref=GenBank:WP_000030904.1;Name=WP_000030904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129756.1;locus_tag=CFSAN001082_RS27890;product=YfcZ/YiiS family protein;protein_id=WP_000030904.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	5588	6898	.	+	.	ID=gene-CFSAN001082_RS27895;Name=fadI;gbkey=Gene;gene=fadI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27895;old_locus_tag=CFSAN001082_03831
NZ_APAH01000058.1	Protein Homology	CDS	5588	6898	.	+	0	ID=cds-WP_023194396.1;Parent=gene-CFSAN001082_RS27895;Dbxref=GenBank:WP_023194396.1;Name=WP_023194396.1;Ontology_term=GO:0006631,GO:0016042,GO:0003988,GO:0005737;gbkey=CDS;gene=fadI;go_component=cytoplasm|0005737||IEA;go_function=acetyl-CoA C-acyltransferase activity|0003988||IEA;go_process=fatty acid metabolic process|0006631||IEA,lipid catabolic process|0016042||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461331.2;locus_tag=CFSAN001082_RS27895;product=acetyl-CoA C-acyltransferase FadI;protein_id=WP_023194396.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	6898	9045	.	+	.	ID=gene-CFSAN001082_RS27900;Name=fadJ;gbkey=Gene;gene=fadJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27900;old_locus_tag=CFSAN001082_03836
NZ_APAH01000058.1	Protein Homology	CDS	6898	9045	.	+	0	ID=cds-WP_023253887.1;Parent=gene-CFSAN001082_RS27900;Dbxref=GenBank:WP_023253887.1;Name=WP_023253887.1;Ontology_term=GO:0009062,GO:0003857,GO:0004300,GO:0008692,GO:0051287;gbkey=CDS;gene=fadJ;go_function=3-hydroxyacyl-CoA dehydrogenase activity|0003857||IEA,enoyl-CoA hydratase activity|0004300||IEA,3-hydroxybutyryl-CoA epimerase activity|0008692||IEA,NAD binding|0051287||IEA;go_process=fatty acid catabolic process|0009062||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461330.1;locus_tag=CFSAN001082_RS27900;product=fatty acid oxidation complex subunit alpha FadJ;protein_id=WP_023253887.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	9254	9739	.	+	.	ID=gene-CFSAN001082_RS27905;Name=sixA;gbkey=Gene;gene=sixA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27905;old_locus_tag=CFSAN001082_03841
NZ_APAH01000058.1	Protein Homology	CDS	9254	9739	.	+	0	ID=cds-WP_001195800.1;Parent=gene-CFSAN001082_RS27905;Dbxref=GenBank:WP_001195800.1;Name=WP_001195800.1;Ontology_term=GO:0036211,GO:0101006,GO:0005737;gbkey=CDS;gene=sixA;go_component=cytoplasm|0005737||IEA;go_function=protein histidine phosphatase activity|0101006||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461329.1;locus_tag=CFSAN001082_RS27905;product=phosphohistidine phosphatase SixA;protein_id=WP_001195800.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	9839	10390	.	-	.	ID=gene-CFSAN001082_RS27910;Name=smrB;gbkey=Gene;gene=smrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27910;old_locus_tag=CFSAN001082_03846
NZ_APAH01000058.1	Protein Homology	CDS	9839	10390	.	-	0	ID=cds-WP_000730794.1;Parent=gene-CFSAN001082_RS27910;Dbxref=GenBank:WP_000730794.1;Name=WP_000730794.1;gbkey=CDS;gene=smrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461328.1;locus_tag=CFSAN001082_RS27910;product=endonuclease SmrB;protein_id=WP_000730794.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	10556	11488	.	+	.	ID=gene-CFSAN001082_RS27915;Name=prmB;gbkey=Gene;gene=prmB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27915;old_locus_tag=CFSAN001082_03851
NZ_APAH01000058.1	Protein Homology	CDS	10556	11488	.	+	0	ID=cds-WP_001542329.1;Parent=gene-CFSAN001082_RS27915;Dbxref=GenBank:WP_001542329.1;Name=WP_001542329.1;Ontology_term=GO:0018364,GO:0042273,GO:0008276,GO:0008757;gbkey=CDS;gene=prmB;go_function=protein methyltransferase activity|0008276||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=peptidyl-glutamine methylation|0018364||IEA,ribosomal large subunit biogenesis|0042273||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129736.1;locus_tag=CFSAN001082_RS27915;product=50S ribosomal protein L3 N(5)-glutamine methyltransferase;protein_id=WP_001542329.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	11524	12609	.	+	.	ID=gene-CFSAN001082_RS27920;Name=aroC;gbkey=Gene;gene=aroC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27920;old_locus_tag=CFSAN001082_03856
NZ_APAH01000058.1	Protein Homology	CDS	11524	12609	.	+	0	ID=cds-WP_023253888.1;Parent=gene-CFSAN001082_RS27920;Dbxref=GenBank:WP_023253888.1;Name=WP_023253888.1;Ontology_term=GO:0009073,GO:0004107;gbkey=CDS;gene=aroC;go_function=chorismate synthase activity|0004107||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129642.1;locus_tag=CFSAN001082_RS27920;product=chorismate synthase;protein_id=WP_023253888.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	12613	13437	.	+	.	ID=gene-CFSAN001082_RS27925;Name=mepA;gbkey=Gene;gene=mepA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27925;old_locus_tag=CFSAN001082_03861
NZ_APAH01000058.1	Protein Homology	CDS	12613	13437	.	+	0	ID=cds-WP_000750429.1;Parent=gene-CFSAN001082_RS27925;Dbxref=GenBank:WP_000750429.1;Name=WP_000750429.1;Ontology_term=GO:0006508,GO:0004252,GO:0030288;gbkey=CDS;gene=mepA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461325.1;locus_tag=CFSAN001082_RS27925;product=penicillin-insensitive murein endopeptidase;protein_id=WP_000750429.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	13437	14246	.	+	.	ID=gene-CFSAN001082_RS27930;Name=CFSAN001082_RS27930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27930;old_locus_tag=CFSAN001082_03866
NZ_APAH01000058.1	Protein Homology	CDS	13437	14246	.	+	0	ID=cds-WP_000368599.1;Parent=gene-CFSAN001082_RS27930;Dbxref=GenBank:WP_000368599.1;Name=WP_000368599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461324.1;locus_tag=CFSAN001082_RS27930;product=sulfite exporter TauE/SafE family protein;protein_id=WP_000368599.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	14246	14794	.	+	.	ID=gene-CFSAN001082_RS27935;Name=CFSAN001082_RS27935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27935;old_locus_tag=CFSAN001082_03871
NZ_APAH01000058.1	Protein Homology	CDS	14246	14794	.	+	0	ID=cds-WP_001066345.1;Parent=gene-CFSAN001082_RS27935;Dbxref=GenBank:WP_001066345.1;Name=WP_001066345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461323.1;locus_tag=CFSAN001082_RS27935;product=elongation factor P hydroxylase;protein_id=WP_001066345.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	14827	15102	.	+	.	ID=gene-CFSAN001082_RS27940;Name=CFSAN001082_RS27940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27940;old_locus_tag=CFSAN001082_03876
NZ_APAH01000058.1	Protein Homology	CDS	14827	15102	.	+	0	ID=cds-WP_000559749.1;Parent=gene-CFSAN001082_RS27940;Dbxref=GenBank:WP_000559749.1;Name=WP_000559749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461322.1;locus_tag=CFSAN001082_RS27940;product=YfcL family protein;protein_id=WP_000559749.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	15154	17154	.	-	.	ID=gene-CFSAN001082_RS27945;Name=mnmC;gbkey=Gene;gene=mnmC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27945;old_locus_tag=CFSAN001082_03881
NZ_APAH01000058.1	Protein Homology	CDS	15154	17154	.	-	0	ID=cds-WP_023253889.1;Parent=gene-CFSAN001082_RS27945;Dbxref=GenBank:WP_023253889.1;Name=WP_023253889.1;Ontology_term=GO:0008033,GO:0004808,GO:0016491;gbkey=CDS;gene=mnmC;go_function=tRNA (5-methylaminomethyl-2-thiouridylate)(34)-methyltransferase activity|0004808||IEA,oxidoreductase activity|0016491||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001540542.1;locus_tag=CFSAN001082_RS27945;product=bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;protein_id=WP_023253889.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	17314	18528	.	+	.	ID=gene-CFSAN001082_RS27950;Name=fabB;gbkey=Gene;gene=fabB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27950;old_locus_tag=CFSAN001082_03886
NZ_APAH01000058.1	Protein Homology	CDS	17314	18528	.	+	0	ID=cds-WP_000817161.1;Parent=gene-CFSAN001082_RS27950;Dbxref=GenBank:WP_000817161.1;Name=WP_000817161.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabB;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461320.1;locus_tag=CFSAN001082_RS27950;product=beta-ketoacyl-ACP synthase I;protein_id=WP_000817161.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	18626	19282	.	+	.	ID=gene-CFSAN001082_RS27955;Name=CFSAN001082_RS27955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27955;old_locus_tag=CFSAN001082_03891
NZ_APAH01000058.1	Protein Homology	CDS	18626	19282	.	+	0	ID=cds-WP_001142914.1;Parent=gene-CFSAN001082_RS27955;Dbxref=GenBank:WP_001142914.1;Name=WP_001142914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461319.1;locus_tag=CFSAN001082_RS27955;product=CPBP family intramembrane glutamic endopeptidase;protein_id=WP_001142914.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	19349	19867	.	-	.	ID=gene-CFSAN001082_RS27960;Name=CFSAN001082_RS27960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27960;old_locus_tag=CFSAN001082_03896
NZ_APAH01000058.1	Protein Homology	CDS	19349	19867	.	-	0	ID=cds-WP_017441451.1;Parent=gene-CFSAN001082_RS27960;Dbxref=GenBank:WP_017441451.1;Name=WP_017441451.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461318.1;locus_tag=CFSAN001082_RS27960;product=YbjP/YqhG family protein;protein_id=WP_017441451.1;transl_table=11
NZ_APAH01000058.1	RefSeq	gene	19867	20235	.	-	.	ID=gene-CFSAN001082_RS27965;Name=CFSAN001082_RS27965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27965;old_locus_tag=CFSAN001082_03901
NZ_APAH01000058.1	Protein Homology	CDS	19867	20235	.	-	0	ID=cds-WP_017441452.1;Parent=gene-CFSAN001082_RS27965;Dbxref=GenBank:WP_017441452.1;Name=WP_017441452.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461317.1;locus_tag=CFSAN001082_RS27965;product=NlpC/P60 family protein;protein_id=WP_017441452.1;transl_table=11
##sequence-region NZ_APAH01000059.1 1 283
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000059.1	RefSeq	region	1	283	.	+	.	ID=NZ_APAH01000059.1:1..283;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000059.1	RefSeq	gene	42	283	.	+	.	ID=gene-CFSAN001082_RS27970;Name=CFSAN001082_RS27970;end_range=283,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27970;old_locus_tag=CFSAN001082_03908;partial=true
NZ_APAH01000059.1	Protein Homology	CDS	42	283	.	+	0	ID=cds-WP_023253890.1;Parent=gene-CFSAN001082_RS27970;Dbxref=GenBank:WP_023253890.1;Name=WP_023253890.1;end_range=283,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460295.1;locus_tag=CFSAN001082_RS27970;partial=true;product=hypothetical protein;protein_id=WP_023253890.1;transl_table=11
##sequence-region NZ_APAH01000060.1 1 382
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000060.1	RefSeq	region	1	382	.	+	.	ID=NZ_APAH01000060.1:1..382;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000060.1	RefSeq	gene	1	243	.	-	.	ID=gene-CFSAN001082_RS48145;Name=CFSAN001082_RS48145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48145;partial=true;start_range=.,1
NZ_APAH01000060.1	Protein Homology	CDS	1	243	.	-	0	ID=cds-WP_237747770.1;Parent=gene-CFSAN001082_RS48145;Dbxref=GenBank:WP_237747770.1;Name=WP_237747770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463025.1;locus_tag=CFSAN001082_RS48145;partial=true;product=cytoplasmic protein;protein_id=WP_237747770.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000061.1 1 1180
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000061.1	RefSeq	region	1	1180	.	+	.	ID=NZ_APAH01000061.1:1..1180;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000061.1	RefSeq	pseudogene	67	198	.	-	.	ID=gene-CFSAN001082_RS48710;Name=CFSAN001082_RS48710;end_range=198,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48710;partial=true;pseudo=true
NZ_APAH01000061.1	Protein Homology	CDS	67	198	.	-	0	ID=cds-CFSAN001082_RS48710;Parent=gene-CFSAN001082_RS48710;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=198,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463177.1;locus_tag=CFSAN001082_RS48710;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000061.1	RefSeq	pseudogene	309	408	.	-	.	ID=gene-CFSAN001082_RS48715;Name=CFSAN001082_RS48715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48715;partial=true;pseudo=true;start_range=.,309
NZ_APAH01000061.1	Protein Homology	CDS	309	408	.	-	0	ID=cds-CFSAN001082_RS48715;Parent=gene-CFSAN001082_RS48715;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463178.1;locus_tag=CFSAN001082_RS48715;partial=true;product=hypothetical protein;pseudo=true;start_range=.,309;transl_table=11
NZ_APAH01000061.1	RefSeq	gene	428	595	.	+	.	ID=gene-CFSAN001082_RS48720;Name=CFSAN001082_RS48720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48720
NZ_APAH01000061.1	Protein Homology	CDS	428	595	.	+	0	ID=cds-WP_071527476.1;Parent=gene-CFSAN001082_RS48720;Dbxref=GenBank:WP_071527476.1;Name=WP_071527476.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: protein motif:HMM:NF012235.6;locus_tag=CFSAN001082_RS48720;product=ATP-binding cassette domain-containing protein;protein_id=WP_071527476.1;transl_table=11
NZ_APAH01000061.1	RefSeq	gene	602	889	.	-	.	ID=gene-CFSAN001082_RS27980;Name=rtsB;gbkey=Gene;gene=rtsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27980;old_locus_tag=CFSAN001082_03918
NZ_APAH01000061.1	Protein Homology	CDS	602	889	.	-	0	ID=cds-WP_072103482.1;Parent=gene-CFSAN001082_RS27980;Dbxref=GenBank:WP_072103482.1;Name=WP_072103482.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=rtsB;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463179.3;locus_tag=CFSAN001082_RS27980;product=transcriptional regulator RtsB;protein_id=WP_072103482.1;transl_table=11
NZ_APAH01000061.1	RefSeq	pseudogene	886	1180	.	-	.	ID=gene-CFSAN001082_RS46560;Name=rtsA;end_range=1180,.;gbkey=Gene;gene=rtsA;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46560;partial=true;pseudo=true
NZ_APAH01000061.1	Protein Homology	CDS	886	1180	.	-	1	ID=cds-CFSAN001082_RS46560;Parent=gene-CFSAN001082_RS46560;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=1180,.;gbkey=CDS;gene=rtsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463180.1;locus_tag=CFSAN001082_RS46560;partial=true;product=transcriptional regulator RtsA;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000062.1 1 14719
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000062.1	RefSeq	region	1	14719	.	+	.	ID=NZ_APAH01000062.1:1..14719;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000062.1	RefSeq	gene	1	1222	.	-	.	ID=gene-CFSAN001082_RS27985;Name=icd;gbkey=Gene;gene=icd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27985;old_locus_tag=CFSAN001082_03923;partial=true;start_range=.,1
NZ_APAH01000062.1	Protein Homology	CDS	1	1222	.	-	0	ID=cds-WP_023253892.1;Parent=gene-CFSAN001082_RS27985;Dbxref=GenBank:WP_023253892.1;Name=WP_023253892.1;Ontology_term=GO:0006099,GO:0000287,GO:0004450,GO:0051287;gbkey=CDS;gene=icd;go_function=magnesium ion binding|0000287||IEA,isocitrate dehydrogenase (NADP+) activity|0004450||IEA,NAD binding|0051287||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000444467.1;locus_tag=CFSAN001082_RS27985;partial=true;product=NADP-dependent isocitrate dehydrogenase;protein_id=WP_023253892.1;start_range=.,1;transl_table=11
NZ_APAH01000062.1	RefSeq	gene	1394	2059	.	+	.	ID=gene-CFSAN001082_RS27990;Name=rluE;gbkey=Gene;gene=rluE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27990;old_locus_tag=CFSAN001082_03928
NZ_APAH01000062.1	Protein Homology	CDS	1394	2059	.	+	0	ID=cds-WP_001249412.1;Parent=gene-CFSAN001082_RS27990;Dbxref=GenBank:WP_001249412.1;Name=WP_001249412.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;gene=rluE;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460207.1;locus_tag=CFSAN001082_RS27990;product=23S rRNA pseudouridine(2457) synthase RluE;protein_id=WP_001249412.1;transl_table=11
NZ_APAH01000062.1	RefSeq	gene	2056	2385	.	+	.	ID=gene-CFSAN001082_RS27995;Name=CFSAN001082_RS27995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS27995;old_locus_tag=CFSAN001082_03933
NZ_APAH01000062.1	Protein Homology	CDS	2056	2385	.	+	0	ID=cds-WP_000825956.1;Parent=gene-CFSAN001082_RS27995;Dbxref=GenBank:WP_000825956.1;Name=WP_000825956.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460206.1;locus_tag=CFSAN001082_RS27995;product=lysozyme inhibitor LprI family protein;protein_id=WP_000825956.1;transl_table=11
NZ_APAH01000062.1	RefSeq	gene	2397	2858	.	+	.	ID=gene-CFSAN001082_RS28000;Name=CFSAN001082_RS28000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28000;old_locus_tag=CFSAN001082_03938
NZ_APAH01000062.1	Protein Homology	CDS	2397	2858	.	+	0	ID=cds-WP_023206782.1;Parent=gene-CFSAN001082_RS28000;Dbxref=GenBank:WP_023206782.1;Name=WP_023206782.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460205.1;locus_tag=CFSAN001082_RS28000;product=NUDIX hydrolase;protein_id=WP_023206782.1;transl_table=11
NZ_APAH01000062.1	RefSeq	gene	2912	4018	.	+	.	ID=gene-CFSAN001082_RS28005;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;gene_synonym=trmU;locus_tag=CFSAN001082_RS28005;old_locus_tag=CFSAN001082_03943
NZ_APAH01000062.1	Protein Homology	CDS	2912	4018	.	+	0	ID=cds-WP_000004540.1;Parent=gene-CFSAN001082_RS28005;Dbxref=GenBank:WP_000004540.1;Name=WP_000004540.1;Ontology_term=GO:0002143,GO:0006396,GO:0004808,GO:0016783,GO:0005737;gbkey=CDS;gene=mnmA;go_component=cytoplasm|0005737||IEA;go_function=tRNA (5-methylaminomethyl-2-thiouridylate)(34)-methyltransferase activity|0004808||IEA,sulfurtransferase activity|0016783||IEA;go_process=tRNA wobble position uridine thiolation|0002143||IEA,RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309632.2;locus_tag=CFSAN001082_RS28005;product=tRNA 2-thiouridine(34) synthase MnmA;protein_id=WP_000004540.1;transl_table=11
NZ_APAH01000062.1	RefSeq	gene	4105	4746	.	+	.	ID=gene-CFSAN001082_RS28010;Name=hflD;gbkey=Gene;gene=hflD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28010;old_locus_tag=CFSAN001082_03948
NZ_APAH01000062.1	Protein Homology	CDS	4105	4746	.	+	0	ID=cds-WP_001519653.1;Parent=gene-CFSAN001082_RS28010;Dbxref=GenBank:WP_001519653.1;Name=WP_001519653.1;gbkey=CDS;gene=hflD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415650.1;locus_tag=CFSAN001082_RS28010;product=high frequency lysogenization protein HflD;protein_id=WP_001519653.1;transl_table=11
NZ_APAH01000062.1	RefSeq	gene	4750	6120	.	+	.	ID=gene-CFSAN001082_RS28015;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28015;old_locus_tag=CFSAN001082_03953
NZ_APAH01000062.1	Protein Homology	CDS	4750	6120	.	+	0	ID=cds-WP_000423763.1;Parent=gene-CFSAN001082_RS28015;Dbxref=GenBank:WP_000423763.1;Name=WP_000423763.1;Ontology_term=GO:0006188,GO:0009152,GO:0004018;gbkey=CDS;gene=purB;go_function=N6-(1%2C2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|0004018||IEA;go_process=IMP biosynthetic process|0006188||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002950897.1;locus_tag=CFSAN001082_RS28015;product=adenylosuccinate lyase;protein_id=WP_000423763.1;transl_table=11
NZ_APAH01000062.1	RefSeq	gene	6247	6918	.	+	.	ID=gene-CFSAN001082_RS28020;Name=phoP;gbkey=Gene;gene=phoP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28020;old_locus_tag=CFSAN001082_03958
NZ_APAH01000062.1	Protein Homology	CDS	6247	6918	.	+	0	ID=cds-WP_001537766.1;Parent=gene-CFSAN001082_RS28020;Dbxref=GenBank:WP_001537766.1;Name=WP_001537766.1;gbkey=CDS;gene=phoP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707059.1;locus_tag=CFSAN001082_RS28020;product=two-component system response regulator PhoP;protein_id=WP_001537766.1;transl_table=11
NZ_APAH01000062.1	RefSeq	gene	6918	8381	.	+	.	ID=gene-CFSAN001082_RS28025;Name=phoQ;gbkey=Gene;gene=phoQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28025;old_locus_tag=CFSAN001082_03963
NZ_APAH01000062.1	Protein Homology	CDS	6918	8381	.	+	0	ID=cds-WP_001031687.1;Parent=gene-CFSAN001082_RS28025;Dbxref=GenBank:WP_001031687.1;Name=WP_001031687.1;gbkey=CDS;gene=phoQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460200.1;locus_tag=CFSAN001082_RS28025;product=two-component system sensor histidine kinase PhoQ;protein_id=WP_001031687.1;transl_table=11
NZ_APAH01000062.1	RefSeq	gene	8462	9583	.	+	.	ID=gene-CFSAN001082_RS28030;Name=roxA;gbkey=Gene;gene=roxA;gene_biotype=protein_coding;gene_synonym=ycfD;locus_tag=CFSAN001082_RS28030;old_locus_tag=CFSAN001082_03968
NZ_APAH01000062.1	Protein Homology	CDS	8462	9583	.	+	0	ID=cds-WP_000456514.1;Parent=gene-CFSAN001082_RS28030;Dbxref=GenBank:WP_000456514.1;Name=WP_000456514.1;gbkey=CDS;gene=roxA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460199.1;locus_tag=CFSAN001082_RS28030;product=[50S ribosomal protein L16]-arginine 3-hydroxylase;protein_id=WP_000456514.1;transl_table=11
NZ_APAH01000062.1	RefSeq	gene	9623	10957	.	-	.	ID=gene-CFSAN001082_RS28035;Name=CFSAN001082_RS28035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28035;old_locus_tag=CFSAN001082_03973
NZ_APAH01000062.1	Protein Homology	CDS	9623	10957	.	-	0	ID=cds-WP_023253893.1;Parent=gene-CFSAN001082_RS28035;Dbxref=GenBank:WP_023253893.1;Name=WP_023253893.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460198.1;locus_tag=CFSAN001082_RS28035;product=hypothetical protein;protein_id=WP_023253893.1;transl_table=11
NZ_APAH01000062.1	RefSeq	gene	10961	12190	.	-	.	ID=gene-CFSAN001082_RS28040;Name=pepT;gbkey=Gene;gene=pepT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28040;old_locus_tag=CFSAN001082_03978
NZ_APAH01000062.1	Protein Homology	CDS	10961	12190	.	-	0	ID=cds-WP_023253894.1;Parent=gene-CFSAN001082_RS28040;Dbxref=GenBank:WP_023253894.1;Name=WP_023253894.1;Ontology_term=GO:0006508,GO:0008270,GO:0045148;gbkey=CDS;gene=pepT;go_function=zinc ion binding|0008270||IEA,tripeptide aminopeptidase activity|0045148||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460197.1;locus_tag=CFSAN001082_RS28040;product=peptidase T;protein_id=WP_023253894.1;transl_table=11
NZ_APAH01000062.1	RefSeq	gene	12441	13577	.	+	.	ID=gene-CFSAN001082_RS28045;Name=potA;gbkey=Gene;gene=potA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28045;old_locus_tag=CFSAN001082_03983
NZ_APAH01000062.1	Protein Homology	CDS	12441	13577	.	+	0	ID=cds-WP_000531607.1;Parent=gene-CFSAN001082_RS28045;Dbxref=GenBank:WP_000531607.1;Name=WP_000531607.1;Ontology_term=GO:0015846,GO:0005524,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=potA;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460196.1;locus_tag=CFSAN001082_RS28045;product=spermidine/putrescine ABC transporter ATP-binding protein PotA;protein_id=WP_000531607.1;transl_table=11
NZ_APAH01000062.1	RefSeq	gene	13561	14424	.	+	.	ID=gene-CFSAN001082_RS28050;Name=potB;gbkey=Gene;gene=potB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28050;old_locus_tag=CFSAN001082_03988
NZ_APAH01000062.1	Protein Homology	CDS	13561	14424	.	+	0	ID=cds-WP_000799391.1;Parent=gene-CFSAN001082_RS28050;Dbxref=GenBank:WP_000799391.1;Name=WP_000799391.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=potB;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460195.1;locus_tag=CFSAN001082_RS28050;product=spermidine/putrescine ABC transporter permease PotB;protein_id=WP_000799391.1;transl_table=11
##sequence-region NZ_APAH01000063.1 1 10382
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000063.1	RefSeq	region	1	10382	.	+	.	ID=NZ_APAH01000063.1:1..10382;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000063.1	RefSeq	gene	187	1755	.	+	.	ID=gene-CFSAN001082_RS28055;Name=cydA;gbkey=Gene;gene=cydA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28055;old_locus_tag=CFSAN001082_03993
NZ_APAH01000063.1	Protein Homology	CDS	187	1755	.	+	0	ID=cds-WP_000884369.1;Parent=gene-CFSAN001082_RS28055;Dbxref=GenBank:WP_000884369.1;Name=WP_000884369.1;Ontology_term=GO:0019646,GO:0009055,GO:0070069;gbkey=CDS;gene=cydA;go_component=cytochrome complex|0070069||IEA;go_function=electron transfer activity|0009055||IEA;go_process=aerobic electron transport chain|0019646||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459725.1;locus_tag=CFSAN001082_RS28055;product=cytochrome ubiquinol oxidase subunit I;protein_id=WP_000884369.1;transl_table=11
NZ_APAH01000063.1	RefSeq	gene	1771	2910	.	+	.	ID=gene-CFSAN001082_RS28060;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28060;old_locus_tag=CFSAN001082_03998
NZ_APAH01000063.1	Protein Homology	CDS	1771	2910	.	+	0	ID=cds-WP_000568258.1;Parent=gene-CFSAN001082_RS28060;Dbxref=GenBank:WP_000568258.1;Name=WP_000568258.1;Ontology_term=GO:0016020;gbkey=CDS;gene=cydB;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000568269.1;locus_tag=CFSAN001082_RS28060;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_000568258.1;transl_table=11
NZ_APAH01000063.1	RefSeq	gene	2925	3038	.	+	.	ID=gene-CFSAN001082_RS28065;Name=cydX;gbkey=Gene;gene=cydX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28065;old_locus_tag=CFSAN001082_04003
NZ_APAH01000063.1	Protein Homology	CDS	2925	3038	.	+	0	ID=cds-WP_000270278.1;Parent=gene-CFSAN001082_RS28065;Dbxref=GenBank:WP_000270278.1;Name=WP_000270278.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydX;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459727.1;locus_tag=CFSAN001082_RS28065;product=cytochrome bd-I oxidase subunit CydX;protein_id=WP_000270278.1;transl_table=11
NZ_APAH01000063.1	RefSeq	gene	3250	3531	.	+	.	ID=gene-CFSAN001082_RS28070;Name=ybgE;gbkey=Gene;gene=ybgE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28070;old_locus_tag=CFSAN001082_04013
NZ_APAH01000063.1	Protein Homology	CDS	3250	3531	.	+	0	ID=cds-WP_000875305.1;Parent=gene-CFSAN001082_RS28070;Dbxref=GenBank:WP_000875305.1;Name=WP_000875305.1;gbkey=CDS;gene=ybgE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459728.1;locus_tag=CFSAN001082_RS28070;product=cyd operon protein YbgE;protein_id=WP_000875305.1;transl_table=11
NZ_APAH01000063.1	RefSeq	gene	3760	4164	.	+	.	ID=gene-CFSAN001082_RS28075;Name=ybgC;gbkey=Gene;gene=ybgC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28075;old_locus_tag=CFSAN001082_04018
NZ_APAH01000063.1	Protein Homology	CDS	3760	4164	.	+	0	ID=cds-WP_001046240.1;Parent=gene-CFSAN001082_RS28075;Dbxref=GenBank:WP_001046240.1;Name=WP_001046240.1;gbkey=CDS;gene=ybgC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459729.1;locus_tag=CFSAN001082_RS28075;product=tol-pal system-associated acyl-CoA thioesterase;protein_id=WP_001046240.1;transl_table=11
NZ_APAH01000063.1	RefSeq	gene	4161	4853	.	+	.	ID=gene-CFSAN001082_RS28080;Name=tolQ;gbkey=Gene;gene=tolQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28080;old_locus_tag=CFSAN001082_04023
NZ_APAH01000063.1	Protein Homology	CDS	4161	4853	.	+	0	ID=cds-WP_000131318.1;Parent=gene-CFSAN001082_RS28080;Dbxref=GenBank:WP_000131318.1;Name=WP_000131318.1;gbkey=CDS;gene=tolQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459730.1;locus_tag=CFSAN001082_RS28080;product=Tol-Pal system protein TolQ;protein_id=WP_000131318.1;transl_table=11
NZ_APAH01000063.1	RefSeq	gene	4857	5285	.	+	.	ID=gene-CFSAN001082_RS28085;Name=tolR;gbkey=Gene;gene=tolR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28085;old_locus_tag=CFSAN001082_04028
NZ_APAH01000063.1	Protein Homology	CDS	4857	5285	.	+	0	ID=cds-WP_000124676.1;Parent=gene-CFSAN001082_RS28085;Dbxref=GenBank:WP_000124676.1;Name=WP_000124676.1;gbkey=CDS;gene=tolR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965300.1;locus_tag=CFSAN001082_RS28085;product=colicin uptake protein TolR;protein_id=WP_000124676.1;transl_table=11
NZ_APAH01000063.1	RefSeq	gene	5350	6438	.	+	.	ID=gene-CFSAN001082_RS28090;Name=tolA;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28090;old_locus_tag=CFSAN001082_04033
NZ_APAH01000063.1	Protein Homology	CDS	5350	6438	.	+	0	ID=cds-WP_023253895.1;Parent=gene-CFSAN001082_RS28090;Dbxref=GenBank:WP_023253895.1;Name=WP_023253895.1;Ontology_term=GO:0043213,GO:0019534,GO:0016020;gbkey=CDS;gene=tolA;go_component=membrane|0016020||IEA;go_function=toxin transmembrane transporter activity|0019534||IEA;go_process=bacteriocin transport|0043213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459732.1;locus_tag=CFSAN001082_RS28090;product=cell envelope integrity protein TolA;protein_id=WP_023253895.1;transl_table=11
NZ_APAH01000063.1	RefSeq	gene	6562	7854	.	+	.	ID=gene-CFSAN001082_RS28095;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28095;old_locus_tag=CFSAN001082_04038
NZ_APAH01000063.1	Protein Homology	CDS	6562	7854	.	+	0	ID=cds-WP_001562341.1;Parent=gene-CFSAN001082_RS28095;Dbxref=GenBank:WP_001562341.1;Name=WP_001562341.1;Ontology_term=GO:0017038,GO:0005215,GO:0042597;gbkey=CDS;gene=tolB;go_component=periplasmic space|0042597||IEA;go_function=transporter activity|0005215||IEA;go_process=protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001646851.1;locus_tag=CFSAN001082_RS28095;product=Tol-Pal system beta propeller repeat protein TolB;protein_id=WP_001562341.1;transl_table=11
NZ_APAH01000063.1	RefSeq	gene	7889	8413	.	+	.	ID=gene-CFSAN001082_RS28100;Name=pal;gbkey=Gene;gene=pal;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28100;old_locus_tag=CFSAN001082_04043
NZ_APAH01000063.1	Protein Homology	CDS	7889	8413	.	+	0	ID=cds-WP_001176623.1;Parent=gene-CFSAN001082_RS28100;Dbxref=GenBank:WP_001176623.1;Name=WP_001176623.1;gbkey=CDS;gene=pal;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459734.1;locus_tag=CFSAN001082_RS28100;product=peptidoglycan-associated lipoprotein Pal;protein_id=WP_001176623.1;transl_table=11
NZ_APAH01000063.1	RefSeq	gene	8423	9211	.	+	.	ID=gene-CFSAN001082_RS28105;Name=cpoB;gbkey=Gene;gene=cpoB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28105;old_locus_tag=CFSAN001082_04048
NZ_APAH01000063.1	Protein Homology	CDS	8423	9211	.	+	0	ID=cds-WP_000097553.1;Parent=gene-CFSAN001082_RS28105;Dbxref=GenBank:WP_000097553.1;Name=WP_000097553.1;Ontology_term=GO:0051301,GO:0070206,GO:0005515;gbkey=CDS;gene=cpoB;go_function=protein binding|0005515||IEA;go_process=cell division|0051301||IEA,protein trimerization|0070206||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459735.1;locus_tag=CFSAN001082_RS28105;product=cell division protein CpoB;protein_id=WP_000097553.1;transl_table=11
NZ_APAH01000063.1	RefSeq	gene	9376	9451	.	+	.	ID=gene-CFSAN001082_RS28110;Name=CFSAN001082_RS28110;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS28110;old_locus_tag=CFSAN001082_t04060
NZ_APAH01000063.1	tRNAscan-SE	tRNA	9376	9451	.	+	.	ID=rna-CFSAN001082_RS28110;Parent=gene-CFSAN001082_RS28110;anticodon=(pos:9409..9411);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28110;product=tRNA-Lys
NZ_APAH01000063.1	tRNAscan-SE	exon	9376	9451	.	+	.	ID=exon-CFSAN001082_RS28110-1;Parent=rna-CFSAN001082_RS28110;anticodon=(pos:9409..9411);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28110;product=tRNA-Lys
NZ_APAH01000063.1	RefSeq	gene	9588	9663	.	+	.	ID=gene-CFSAN001082_RS28115;Name=CFSAN001082_RS28115;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS28115;old_locus_tag=CFSAN001082_t04062
NZ_APAH01000063.1	tRNAscan-SE	tRNA	9588	9663	.	+	.	ID=rna-CFSAN001082_RS28115;Parent=gene-CFSAN001082_RS28115;anticodon=(pos:9621..9623);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28115;product=tRNA-Val
NZ_APAH01000063.1	tRNAscan-SE	exon	9588	9663	.	+	.	ID=exon-CFSAN001082_RS28115-1;Parent=rna-CFSAN001082_RS28115;anticodon=(pos:9621..9623);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28115;product=tRNA-Val
NZ_APAH01000063.1	RefSeq	gene	9667	9742	.	+	.	ID=gene-CFSAN001082_RS28120;Name=CFSAN001082_RS28120;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS28120;old_locus_tag=CFSAN001082_t04064
NZ_APAH01000063.1	tRNAscan-SE	tRNA	9667	9742	.	+	.	ID=rna-CFSAN001082_RS28120;Parent=gene-CFSAN001082_RS28120;anticodon=(pos:9700..9702);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28120;product=tRNA-Lys
NZ_APAH01000063.1	tRNAscan-SE	exon	9667	9742	.	+	.	ID=exon-CFSAN001082_RS28120-1;Parent=rna-CFSAN001082_RS28120;anticodon=(pos:9700..9702);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28120;product=tRNA-Lys
NZ_APAH01000063.1	RefSeq	gene	9885	9960	.	+	.	ID=gene-CFSAN001082_RS28125;Name=CFSAN001082_RS28125;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS28125;old_locus_tag=CFSAN001082_t04066
NZ_APAH01000063.1	tRNAscan-SE	tRNA	9885	9960	.	+	.	ID=rna-CFSAN001082_RS28125;Parent=gene-CFSAN001082_RS28125;anticodon=(pos:9918..9920);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28125;product=tRNA-Lys
NZ_APAH01000063.1	tRNAscan-SE	exon	9885	9960	.	+	.	ID=exon-CFSAN001082_RS28125-1;Parent=rna-CFSAN001082_RS28125;anticodon=(pos:9918..9920);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28125;product=tRNA-Lys
NZ_APAH01000063.1	RefSeq	gene	10095	10170	.	+	.	ID=gene-CFSAN001082_RS28130;Name=CFSAN001082_RS28130;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS28130;old_locus_tag=CFSAN001082_t04068
NZ_APAH01000063.1	tRNAscan-SE	tRNA	10095	10170	.	+	.	ID=rna-CFSAN001082_RS28130;Parent=gene-CFSAN001082_RS28130;anticodon=(pos:10128..10130);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28130;product=tRNA-Lys
NZ_APAH01000063.1	tRNAscan-SE	exon	10095	10170	.	+	.	ID=exon-CFSAN001082_RS28130-1;Parent=rna-CFSAN001082_RS28130;anticodon=(pos:10128..10130);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28130;product=tRNA-Lys
NZ_APAH01000063.1	RefSeq	gene	10305	10380	.	+	.	ID=gene-CFSAN001082_RS28135;Name=CFSAN001082_RS28135;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS28135;old_locus_tag=CFSAN001082_t04070
NZ_APAH01000063.1	tRNAscan-SE	tRNA	10305	10380	.	+	.	ID=rna-CFSAN001082_RS28135;Parent=gene-CFSAN001082_RS28135;anticodon=(pos:10338..10340);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28135;product=tRNA-Lys
NZ_APAH01000063.1	tRNAscan-SE	exon	10305	10380	.	+	.	ID=exon-CFSAN001082_RS28135-1;Parent=rna-CFSAN001082_RS28135;anticodon=(pos:10338..10340);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28135;product=tRNA-Lys
##sequence-region NZ_APAH01000064.1 1 1260
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000064.1	RefSeq	region	1	1260	.	+	.	ID=NZ_APAH01000064.1:1..1260;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000064.1	RefSeq	gene	205	543	.	+	.	ID=gene-CFSAN001082_RS28140;Name=CFSAN001082_RS28140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28140;old_locus_tag=CFSAN001082_04075
NZ_APAH01000064.1	Protein Homology	CDS	205	543	.	+	0	ID=cds-WP_000159237.1;Parent=gene-CFSAN001082_RS28140;Dbxref=GenBank:WP_000159237.1;Name=WP_000159237.1;Ontology_term=GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460612.1;locus_tag=CFSAN001082_RS28140;product=SMR family transporter;protein_id=WP_000159237.1;transl_table=11
NZ_APAH01000064.1	RefSeq	gene	596	1030	.	-	.	ID=gene-CFSAN001082_RS28145;Name=uspF;gbkey=Gene;gene=uspF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28145;old_locus_tag=CFSAN001082_04080
NZ_APAH01000064.1	Protein Homology	CDS	596	1030	.	-	0	ID=cds-WP_001082296.1;Parent=gene-CFSAN001082_RS28145;Dbxref=GenBank:WP_001082296.1;Name=WP_001082296.1;gbkey=CDS;gene=uspF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460611.1;locus_tag=CFSAN001082_RS28145;product=universal stress protein UspF;protein_id=WP_001082296.1;transl_table=11
##sequence-region NZ_APAH01000065.1 1 18017
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000065.1	RefSeq	region	1	18017	.	+	.	ID=NZ_APAH01000065.1:1..18017;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000065.1	RefSeq	gene	196	1566	.	+	.	ID=gene-CFSAN001082_RS28150;Name=CFSAN001082_RS28150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28150;old_locus_tag=CFSAN001082_04085
NZ_APAH01000065.1	Protein Homology	CDS	196	1566	.	+	0	ID=cds-WP_023204252.1;Parent=gene-CFSAN001082_RS28150;Dbxref=GenBank:WP_023204252.1;Name=WP_023204252.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461742.1;locus_tag=CFSAN001082_RS28150;product=carbohydrate porin;protein_id=WP_023204252.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	1615	3150	.	-	.	ID=gene-CFSAN001082_RS28155;Name=emrB;gbkey=Gene;gene=emrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28155;old_locus_tag=CFSAN001082_04090
NZ_APAH01000065.1	Protein Homology	CDS	1615	3150	.	-	0	ID=cds-WP_023253897.1;Parent=gene-CFSAN001082_RS28155;Dbxref=GenBank:WP_023253897.1;Name=WP_023253897.1;gbkey=CDS;gene=emrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461741.1;locus_tag=CFSAN001082_RS28155;product=multidrug efflux MFS transporter permease subunit EmrB;protein_id=WP_023253897.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	3167	4339	.	-	.	ID=gene-CFSAN001082_RS28160;Name=emrA;gbkey=Gene;gene=emrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28160;old_locus_tag=CFSAN001082_04095
NZ_APAH01000065.1	Protein Homology	CDS	3167	4339	.	-	0	ID=cds-WP_001275603.1;Parent=gene-CFSAN001082_RS28160;Dbxref=GenBank:WP_001275603.1;Name=WP_001275603.1;gbkey=CDS;gene=emrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461740.1;locus_tag=CFSAN001082_RS28160;product=multidrug efflux MFS transporter periplasmic adaptor subunit EmrA;protein_id=WP_001275603.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	4466	4996	.	-	.	ID=gene-CFSAN001082_RS28165;Name=mprA;gbkey=Gene;gene=mprA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28165;old_locus_tag=CFSAN001082_04100
NZ_APAH01000065.1	Protein Homology	CDS	4466	4996	.	-	0	ID=cds-WP_000378431.1;Parent=gene-CFSAN001082_RS28165;Dbxref=GenBank:WP_000378431.1;Name=WP_000378431.1;gbkey=CDS;gene=mprA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461739.1;locus_tag=CFSAN001082_RS28165;product=transcriptional repressor MprA;protein_id=WP_000378431.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	5493	6677	.	-	.	ID=gene-CFSAN001082_RS28170;Name=CFSAN001082_RS28170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28170;old_locus_tag=CFSAN001082_04105
NZ_APAH01000065.1	Protein Homology	CDS	5493	6677	.	-	0	ID=cds-WP_000165758.1;Parent=gene-CFSAN001082_RS28170;Dbxref=GenBank:WP_000165758.1;Name=WP_000165758.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461738.1;locus_tag=CFSAN001082_RS28170;product=MFS transporter;protein_id=WP_000165758.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	6842	7837	.	-	.	ID=gene-CFSAN001082_RS28175;Name=proX;gbkey=Gene;gene=proX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28175;old_locus_tag=CFSAN001082_04110
NZ_APAH01000065.1	Protein Homology	CDS	6842	7837	.	-	0	ID=cds-WP_001216618.1;Parent=gene-CFSAN001082_RS28175;Dbxref=GenBank:WP_001216618.1;Name=WP_001216618.1;Ontology_term=GO:0055085,GO:0022857,GO:0043190;gbkey=CDS;gene=proX;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461737.1;locus_tag=CFSAN001082_RS28175;product=glycine betaine/L-proline ABC transporter substrate-binding protein ProX;protein_id=WP_001216618.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	7907	8971	.	-	.	ID=gene-CFSAN001082_RS28180;Name=proW;gbkey=Gene;gene=proW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28180;old_locus_tag=CFSAN001082_04115
NZ_APAH01000065.1	Protein Homology	CDS	7907	8971	.	-	0	ID=cds-WP_000775015.1;Parent=gene-CFSAN001082_RS28180;Dbxref=GenBank:WP_000775015.1;Name=WP_000775015.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=proW;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461736.1;locus_tag=CFSAN001082_RS28180;product=glycine betaine/L-proline ABC transporter permease ProW;protein_id=WP_000775015.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	8964	10166	.	-	.	ID=gene-CFSAN001082_RS28185;Name=proV;gbkey=Gene;gene=proV;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28185;old_locus_tag=CFSAN001082_04120
NZ_APAH01000065.1	Protein Homology	CDS	8964	10166	.	-	0	ID=cds-WP_000985529.1;Parent=gene-CFSAN001082_RS28185;Dbxref=GenBank:WP_000985529.1;Name=WP_000985529.1;Ontology_term=GO:0031460,GO:0005524;gbkey=CDS;gene=proV;go_function=ATP binding|0005524||IEA;go_process=glycine betaine transport|0031460||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461735.1;locus_tag=CFSAN001082_RS28185;product=glycine betaine/L-proline ABC transporter ATP-binding protein ProV;protein_id=WP_000985529.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	10521	11480	.	-	.	ID=gene-CFSAN001082_RS28190;Name=nrdF;gbkey=Gene;gene=nrdF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28190;old_locus_tag=CFSAN001082_04125
NZ_APAH01000065.1	Protein Homology	CDS	10521	11480	.	-	0	ID=cds-WP_023253898.1;Parent=gene-CFSAN001082_RS28190;Dbxref=GenBank:WP_023253898.1;Name=WP_023253898.1;Ontology_term=GO:0009263,GO:0004748,GO:0005971;gbkey=CDS;gene=nrdF;go_component=ribonucleoside-diphosphate reductase complex|0005971||IEA;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461734.1;locus_tag=CFSAN001082_RS28190;product=class 1b ribonucleoside-diphosphate reductase subunit beta;protein_id=WP_023253898.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	11491	13608	.	-	.	ID=gene-CFSAN001082_RS28195;Name=nrdE;gbkey=Gene;gene=nrdE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28195;old_locus_tag=CFSAN001082_04130
NZ_APAH01000065.1	Protein Homology	CDS	11491	13608	.	-	0	ID=cds-WP_015633081.1;Parent=gene-CFSAN001082_RS28195;Dbxref=GenBank:WP_015633081.1;Name=WP_015633081.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;gene=nrdE;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001526351.1;locus_tag=CFSAN001082_RS28195;product=class 1b ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_015633081.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	13608	14018	.	-	.	ID=gene-CFSAN001082_RS28200;Name=nrdI;gbkey=Gene;gene=nrdI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28200;old_locus_tag=CFSAN001082_04135
NZ_APAH01000065.1	Protein Homology	CDS	13608	14018	.	-	0	ID=cds-WP_001275402.1;Parent=gene-CFSAN001082_RS28200;Dbxref=GenBank:WP_001275402.1;Name=WP_001275402.1;Ontology_term=GO:0009263,GO:0036211,GO:0010181;gbkey=CDS;gene=nrdI;go_function=FMN binding|0010181||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA,protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461732.1;locus_tag=CFSAN001082_RS28200;product=class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI;protein_id=WP_001275402.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	14015	14260	.	-	.	ID=gene-CFSAN001082_RS28205;Name=nrdH;gbkey=Gene;gene=nrdH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28205;old_locus_tag=CFSAN001082_04140
NZ_APAH01000065.1	Protein Homology	CDS	14015	14260	.	-	0	ID=cds-WP_000028870.1;Parent=gene-CFSAN001082_RS28205;Dbxref=GenBank:WP_000028870.1;Name=WP_000028870.1;gbkey=CDS;gene=nrdH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461731.1;locus_tag=CFSAN001082_RS28205;product=glutaredoxin-like protein NrdH;protein_id=WP_000028870.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	14532	14963	.	-	.	ID=gene-CFSAN001082_RS28210;Name=CFSAN001082_RS28210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28210;old_locus_tag=CFSAN001082_04145
NZ_APAH01000065.1	Protein Homology	CDS	14532	14963	.	-	0	ID=cds-WP_023193597.1;Parent=gene-CFSAN001082_RS28210;Dbxref=GenBank:WP_023193597.1;Name=WP_023193597.1;Ontology_term=GO:0051920;gbkey=CDS;go_function=peroxiredoxin activity|0051920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461730.1;locus_tag=CFSAN001082_RS28210;product=carboxymuconolactone decarboxylase family protein;protein_id=WP_023193597.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	15052	16386	.	+	.	ID=gene-CFSAN001082_RS28215;Name=CFSAN001082_RS28215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28215;old_locus_tag=CFSAN001082_04150
NZ_APAH01000065.1	Protein Homology	CDS	15052	16386	.	+	0	ID=cds-WP_023253899.1;Parent=gene-CFSAN001082_RS28215;Dbxref=GenBank:WP_023253899.1;Name=WP_023253899.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461729.1;locus_tag=CFSAN001082_RS28215;product=PLP-dependent aminotransferase family protein;protein_id=WP_023253899.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	16470	16796	.	-	.	ID=gene-CFSAN001082_RS28220;Name=CFSAN001082_RS28220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28220;old_locus_tag=CFSAN001082_04155
NZ_APAH01000065.1	Protein Homology	CDS	16470	16796	.	-	0	ID=cds-WP_001519557.1;Parent=gene-CFSAN001082_RS28220;Dbxref=GenBank:WP_001519557.1;Name=WP_001519557.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001528627.1;locus_tag=CFSAN001082_RS28220;product=DUF883 domain-containing protein;protein_id=WP_001519557.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	16958	17308	.	+	.	ID=gene-CFSAN001082_RS28225;Name=CFSAN001082_RS28225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28225;old_locus_tag=CFSAN001082_04160
NZ_APAH01000065.1	Protein Homology	CDS	16958	17308	.	+	0	ID=cds-WP_000281305.1;Parent=gene-CFSAN001082_RS28225;Dbxref=GenBank:WP_000281305.1;Name=WP_000281305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461727.1;locus_tag=CFSAN001082_RS28225;product=DUF2002 family protein;protein_id=WP_000281305.1;transl_table=11
NZ_APAH01000065.1	RefSeq	gene	17343	17792	.	-	.	ID=gene-CFSAN001082_RS28230;Name=alaE;gbkey=Gene;gene=alaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28230;old_locus_tag=CFSAN001082_04165
NZ_APAH01000065.1	Protein Homology	CDS	17343	17792	.	-	0	ID=cds-WP_000492669.1;Parent=gene-CFSAN001082_RS28230;Dbxref=GenBank:WP_000492669.1;Name=WP_000492669.1;gbkey=CDS;gene=alaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461726.1;locus_tag=CFSAN001082_RS28230;product=L-alanine exporter AlaE;protein_id=WP_000492669.1;transl_table=11
##sequence-region NZ_APAH01000066.1 1 1666
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000066.1	RefSeq	region	1	1666	.	+	.	ID=NZ_APAH01000066.1:1..1666;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000066.1	RefSeq	gene	1	1423	.	+	.	ID=gene-CFSAN001082_RS28240;Name=CFSAN001082_RS28240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28240;old_locus_tag=CFSAN001082_04175;partial=true;start_range=.,1
NZ_APAH01000066.1	Protein Homology	CDS	1	1423	.	+	1	ID=cds-WP_023253901.1;Parent=gene-CFSAN001082_RS28240;Dbxref=GenBank:WP_023253901.1;Name=WP_023253901.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460596.1;locus_tag=CFSAN001082_RS28240;partial=true;product=glycosyltransferase family 39 protein;protein_id=WP_023253901.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000067.1 1 8218
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000067.1	RefSeq	region	1	8218	.	+	.	ID=NZ_APAH01000067.1:1..8218;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000067.1	RefSeq	gene	98	228	.	-	.	ID=gene-CFSAN001082_RS28295;Name=CFSAN001082_RS28295;gbkey=Gene;gene_biotype=ncRNA;locus_tag=CFSAN001082_RS28295
NZ_APAH01000067.1	cmsearch	ncRNA	98	228	.	-	.	ID=rna-CFSAN001082_RS28295;Parent=gene-CFSAN001082_RS28295;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS28295;product=RtT sRNA
NZ_APAH01000067.1	cmsearch	exon	98	228	.	-	.	ID=exon-CFSAN001082_RS28295-1;Parent=rna-CFSAN001082_RS28295;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS28295;product=RtT sRNA
NZ_APAH01000067.1	RefSeq	gene	271	355	.	-	.	ID=gene-CFSAN001082_RS28245;Name=CFSAN001082_RS28245;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS28245;old_locus_tag=CFSAN001082_t04232
NZ_APAH01000067.1	tRNAscan-SE	tRNA	271	355	.	-	.	ID=rna-CFSAN001082_RS28245;Parent=gene-CFSAN001082_RS28245;anticodon=(pos:complement(319..321));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28245;product=tRNA-Tyr
NZ_APAH01000067.1	tRNAscan-SE	exon	271	355	.	-	.	ID=exon-CFSAN001082_RS28245-1;Parent=rna-CFSAN001082_RS28245;anticodon=(pos:complement(319..321));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28245;product=tRNA-Tyr
NZ_APAH01000067.1	RefSeq	gene	390	521	.	-	.	ID=gene-CFSAN001082_RS28300;Name=CFSAN001082_RS28300;gbkey=Gene;gene_biotype=ncRNA;locus_tag=CFSAN001082_RS28300
NZ_APAH01000067.1	cmsearch	ncRNA	390	521	.	-	.	ID=rna-CFSAN001082_RS28300;Parent=gene-CFSAN001082_RS28300;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS28300;product=RtT sRNA
NZ_APAH01000067.1	cmsearch	exon	390	521	.	-	.	ID=exon-CFSAN001082_RS28300-1;Parent=rna-CFSAN001082_RS28300;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS28300;product=RtT sRNA
NZ_APAH01000067.1	RefSeq	gene	566	650	.	-	.	ID=gene-CFSAN001082_RS28250;Name=CFSAN001082_RS28250;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS28250;old_locus_tag=CFSAN001082_t04234
NZ_APAH01000067.1	tRNAscan-SE	tRNA	566	650	.	-	.	ID=rna-CFSAN001082_RS28250;Parent=gene-CFSAN001082_RS28250;anticodon=(pos:complement(614..616));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28250;product=tRNA-Tyr
NZ_APAH01000067.1	tRNAscan-SE	exon	566	650	.	-	.	ID=exon-CFSAN001082_RS28250-1;Parent=rna-CFSAN001082_RS28250;anticodon=(pos:complement(614..616));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS28250;product=tRNA-Tyr
NZ_APAH01000067.1	RefSeq	gene	679	820	.	-	.	ID=gene-CFSAN001082_RS46260;Name=CFSAN001082_RS46260;gbkey=Gene;gene_biotype=ncRNA;locus_tag=CFSAN001082_RS46260
NZ_APAH01000067.1	cmsearch	ncRNA	679	820	.	-	.	ID=rna-CFSAN001082_RS46260;Parent=gene-CFSAN001082_RS46260;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46260;product=RtT sRNA
NZ_APAH01000067.1	cmsearch	exon	679	820	.	-	.	ID=exon-CFSAN001082_RS46260-1;Parent=rna-CFSAN001082_RS46260;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46260;product=RtT sRNA
NZ_APAH01000067.1	RefSeq	gene	991	1833	.	-	.	ID=gene-CFSAN001082_RS28255;Name=purU;gbkey=Gene;gene=purU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28255;old_locus_tag=CFSAN001082_04190
NZ_APAH01000067.1	Protein Homology	CDS	991	1833	.	-	0	ID=cds-WP_001191156.1;Parent=gene-CFSAN001082_RS28255;Dbxref=GenBank:WP_001191156.1;Name=WP_001191156.1;Ontology_term=GO:0006189,GO:0008864;gbkey=CDS;gene=purU;go_function=formyltetrahydrofolate deformylase activity|0008864||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460715.1;locus_tag=CFSAN001082_RS28255;product=formyltetrahydrofolate deformylase;protein_id=WP_001191156.1;transl_table=11
NZ_APAH01000067.1	RefSeq	gene	1884	2342	.	-	.	ID=gene-CFSAN001082_RS28260;Name=CFSAN001082_RS28260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28260;old_locus_tag=CFSAN001082_04195
NZ_APAH01000067.1	Protein Homology	CDS	1884	2342	.	-	0	ID=cds-WP_001540172.1;Parent=gene-CFSAN001082_RS28260;Dbxref=GenBank:WP_001540172.1;Name=WP_001540172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460714.1;locus_tag=CFSAN001082_RS28260;product=YchJ family protein;protein_id=WP_001540172.1;transl_table=11
NZ_APAH01000067.1	RefSeq	gene	2453	3358	.	+	.	ID=gene-CFSAN001082_RS28265;Name=rssA;gbkey=Gene;gene=rssA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28265;old_locus_tag=CFSAN001082_04200
NZ_APAH01000067.1	Protein Homology	CDS	2453	3358	.	+	0	ID=cds-WP_001230575.1;Parent=gene-CFSAN001082_RS28265;Dbxref=GenBank:WP_001230575.1;Name=WP_001230575.1;Ontology_term=GO:0006629,GO:0004622;gbkey=CDS;gene=rssA;go_function=lysophospholipase activity|0004622||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460713.1;locus_tag=CFSAN001082_RS28265;product=patatin-like phospholipase RssA;protein_id=WP_001230575.1;transl_table=11
NZ_APAH01000067.1	RefSeq	gene	3449	4462	.	+	.	ID=gene-CFSAN001082_RS28270;Name=rssB;gbkey=Gene;gene=rssB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28270;old_locus_tag=CFSAN001082_04205
NZ_APAH01000067.1	Protein Homology	CDS	3449	4462	.	+	0	ID=cds-WP_000193432.1;Parent=gene-CFSAN001082_RS28270;Dbxref=GenBank:WP_000193432.1;Name=WP_000193432.1;Ontology_term=GO:0000160;gbkey=CDS;gene=rssB;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460712.1;locus_tag=CFSAN001082_RS28270;product=two-component system response regulator RssB;protein_id=WP_000193432.1;transl_table=11
NZ_APAH01000067.1	RefSeq	gene	4665	5573	.	+	.	ID=gene-CFSAN001082_RS28275;Name=galU;gbkey=Gene;gene=galU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28275;old_locus_tag=CFSAN001082_04210
NZ_APAH01000067.1	Protein Homology	CDS	4665	5573	.	+	0	ID=cds-WP_000729450.1;Parent=gene-CFSAN001082_RS28275;Dbxref=GenBank:WP_000729450.1;Name=WP_000729450.1;gbkey=CDS;gene=galU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460711.1;locus_tag=CFSAN001082_RS28275;product=UTP--glucose-1-phosphate uridylyltransferase GalU;protein_id=WP_000729450.1;transl_table=11
NZ_APAH01000067.1	RefSeq	gene	5705	6118	.	-	.	ID=gene-CFSAN001082_RS28280;Name=hns;gbkey=Gene;gene=hns;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28280;old_locus_tag=CFSAN001082_04215
NZ_APAH01000067.1	Protein Homology	CDS	5705	6118	.	-	0	ID=cds-WP_001287383.1;Parent=gene-CFSAN001082_RS28280;Dbxref=GenBank:WP_001287383.1;Name=WP_001287383.1;Ontology_term=GO:0071824,GO:0003677;gbkey=CDS;gene=hns;go_function=DNA binding|0003677||IEA;go_process=protein-DNA complex organization|0071824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460710.1;locus_tag=CFSAN001082_RS28280;product=histone-like nucleoid-structuring protein H-NS;protein_id=WP_001287383.1;transl_table=11
NZ_APAH01000067.1	RefSeq	gene	6781	7398	.	+	.	ID=gene-CFSAN001082_RS28285;Name=tdk;gbkey=Gene;gene=tdk;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28285;old_locus_tag=CFSAN001082_04220
NZ_APAH01000067.1	Protein Homology	CDS	6781	7398	.	+	0	ID=cds-WP_000068097.1;Parent=gene-CFSAN001082_RS28285;Dbxref=GenBank:WP_000068097.1;Name=WP_000068097.1;gbkey=CDS;gene=tdk;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460709.1;locus_tag=CFSAN001082_RS28285;product=thymidine kinase;protein_id=WP_000068097.1;transl_table=11
NZ_APAH01000067.1	RefSeq	pseudogene	7594	8218	.	-	.	ID=gene-CFSAN001082_RS28290;Name=CFSAN001082_RS28290;end_range=8218,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS28290;old_locus_tag=CFSAN001082_04225;partial=true;pseudo=true
NZ_APAH01000067.1	Protein Homology	CDS	7594	8218	.	-	1	ID=cds-CFSAN001082_RS28290;Parent=gene-CFSAN001082_RS28290;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=8218,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460708.1;locus_tag=CFSAN001082_RS28290;partial=true;product=iron-containing alcohol dehydrogenase;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000068.1 1 27687
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000068.1	RefSeq	region	1	27687	.	+	.	ID=NZ_APAH01000068.1:1..27687;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000068.1	RefSeq	gene	96	2426	.	-	.	ID=gene-CFSAN001082_RS28305;Name=CFSAN001082_RS28305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28305;old_locus_tag=CFSAN001082_04234
NZ_APAH01000068.1	Protein Homology	CDS	96	2426	.	-	0	ID=cds-WP_023253903.1;Parent=gene-CFSAN001082_RS28305;Dbxref=GenBank:WP_023253903.1;Name=WP_023253903.1;Ontology_term=GO:0003676,GO:0003729,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=nucleic acid binding|0003676||IEA,mRNA binding|0003729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312276.2;locus_tag=CFSAN001082_RS28305;product=Tex family protein;protein_id=WP_023253903.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	2525	2998	.	-	.	ID=gene-CFSAN001082_RS28310;Name=greB;gbkey=Gene;gene=greB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28310;old_locus_tag=CFSAN001082_04239
NZ_APAH01000068.1	Protein Homology	CDS	2525	2998	.	-	0	ID=cds-WP_000856695.1;Parent=gene-CFSAN001082_RS28310;Dbxref=GenBank:WP_000856695.1;Name=WP_000856695.1;Ontology_term=GO:0032784,GO:0003677;gbkey=CDS;gene=greB;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015703675.1;locus_tag=CFSAN001082_RS28310;product=transcription elongation factor GreB;protein_id=WP_000856695.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	3224	3943	.	+	.	ID=gene-CFSAN001082_RS28315;Name=ompR;gbkey=Gene;gene=ompR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28315;old_locus_tag=CFSAN001082_04244
NZ_APAH01000068.1	Protein Homology	CDS	3224	3943	.	+	0	ID=cds-WP_001157751.1;Parent=gene-CFSAN001082_RS28315;Dbxref=GenBank:WP_001157751.1;Name=WP_001157751.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=ompR;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014646135.1;locus_tag=CFSAN001082_RS28315;product=two-component system response regulator OmpR;protein_id=WP_001157751.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	3940	5292	.	+	.	ID=gene-CFSAN001082_RS28320;Name=envZ;gbkey=Gene;gene=envZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28320;old_locus_tag=CFSAN001082_04249
NZ_APAH01000068.1	Protein Homology	CDS	3940	5292	.	+	0	ID=cds-WP_001253818.1;Parent=gene-CFSAN001082_RS28320;Dbxref=GenBank:WP_001253818.1;Name=WP_001253818.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=envZ;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462404.1;locus_tag=CFSAN001082_RS28320;product=two-component system sensor histidine kinase EnvZ;protein_id=WP_001253818.1;transl_table=11
NZ_APAH01000068.1	RefSeq	pseudogene	5367	6986	.	-	.	ID=gene-CFSAN001082_RS0122995;Name=pckA;gbkey=Gene;gene=pckA;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0122995;pseudo=true
NZ_APAH01000068.1	Protein Homology	CDS	5367	6986	.	-	0	ID=cds-CFSAN001082_RS0122995;Parent=gene-CFSAN001082_RS0122995;Note=internal stop;Ontology_term=GO:0006094,GO:0004612;gbkey=CDS;gene=pckA;go_function=phosphoenolpyruvate carboxykinase (ATP) activity|0004612||IEA;go_process=gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462403.2;locus_tag=CFSAN001082_RS0122995;product=phosphoenolpyruvate carboxykinase (ATP);pseudo=true;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	7366	9075	.	+	.	ID=gene-CFSAN001082_RS28325;Name=CFSAN001082_RS28325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28325;old_locus_tag=CFSAN001082_04264
NZ_APAH01000068.1	Protein Homology	CDS	7366	9075	.	+	0	ID=cds-WP_023253904.1;Parent=gene-CFSAN001082_RS28325;Dbxref=GenBank:WP_023253904.1;Name=WP_023253904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462402.1;locus_tag=CFSAN001082_RS28325;product=DUF4153 domain-containing protein;protein_id=WP_023253904.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	9184	10062	.	-	.	ID=gene-CFSAN001082_RS28330;Name=hslO;gbkey=Gene;gene=hslO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28330;old_locus_tag=CFSAN001082_04269
NZ_APAH01000068.1	Protein Homology	CDS	9184	10062	.	-	0	ID=cds-WP_023242768.1;Parent=gene-CFSAN001082_RS28330;Dbxref=GenBank:WP_023242768.1;Name=WP_023242768.1;Ontology_term=GO:0006457,GO:0051082;gbkey=CDS;gene=hslO;go_function=unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417860.2;locus_tag=CFSAN001082_RS28330;product=Hsp33 family molecular chaperone HslO;protein_id=WP_023242768.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	10087	10488	.	-	.	ID=gene-CFSAN001082_RS28335;Name=hslR;gbkey=Gene;gene=hslR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28335;old_locus_tag=CFSAN001082_04274
NZ_APAH01000068.1	Protein Homology	CDS	10087	10488	.	-	0	ID=cds-WP_000660721.1;Parent=gene-CFSAN001082_RS28335;Dbxref=GenBank:WP_000660721.1;Name=WP_000660721.1;gbkey=CDS;gene=hslR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462400.1;locus_tag=CFSAN001082_RS28335;product=ribosome-associated heat shock protein Hsp15;protein_id=WP_000660721.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	10499	11167	.	-	.	ID=gene-CFSAN001082_RS28340;Name=yrfG;gbkey=Gene;gene=yrfG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28340;old_locus_tag=CFSAN001082_04279
NZ_APAH01000068.1	Protein Homology	CDS	10499	11167	.	-	0	ID=cds-WP_001520508.1;Parent=gene-CFSAN001082_RS28340;Dbxref=GenBank:WP_001520508.1;Name=WP_001520508.1;gbkey=CDS;gene=yrfG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462399.1;locus_tag=CFSAN001082_RS28340;product=GMP/IMP nucleotidase;protein_id=WP_001520508.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	11232	13364	.	-	.	ID=gene-CFSAN001082_RS28345;Name=igaA;gbkey=Gene;gene=igaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28345;old_locus_tag=CFSAN001082_04284
NZ_APAH01000068.1	Protein Homology	CDS	11232	13364	.	-	0	ID=cds-WP_000104092.1;Parent=gene-CFSAN001082_RS28345;Dbxref=GenBank:WP_000104092.1;Name=WP_000104092.1;gbkey=CDS;gene=igaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462398.1;locus_tag=CFSAN001082_RS28345;product=intracellular growth attenuator protein IgaA;protein_id=WP_000104092.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	13687	14250	.	+	.	ID=gene-CFSAN001082_RS28350;Name=nudE;gbkey=Gene;gene=nudE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28350;old_locus_tag=CFSAN001082_04289
NZ_APAH01000068.1	Protein Homology	CDS	13687	14250	.	+	0	ID=cds-WP_000045725.1;Parent=gene-CFSAN001082_RS28350;Dbxref=GenBank:WP_000045725.1;Name=WP_000045725.1;Ontology_term=GO:0016787;gbkey=CDS;gene=nudE;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000045725.1;locus_tag=CFSAN001082_RS28350;product=ADP compounds hydrolase NudE;protein_id=WP_000045725.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	14346	16898	.	-	.	ID=gene-CFSAN001082_RS28355;Name=mrcA;gbkey=Gene;gene=mrcA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28355;old_locus_tag=CFSAN001082_04294
NZ_APAH01000068.1	Protein Homology	CDS	14346	16898	.	-	0	ID=cds-WP_000673808.1;Parent=gene-CFSAN001082_RS28355;Dbxref=GenBank:WP_000673808.1;Name=WP_000673808.1;Ontology_term=GO:0008658;gbkey=CDS;gene=mrcA;go_function=penicillin binding|0008658||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312265.2;locus_tag=CFSAN001082_RS28355;product=peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA;protein_id=WP_000673808.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	17019	17798	.	+	.	ID=gene-CFSAN001082_RS28360;Name=CFSAN001082_RS28360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28360;old_locus_tag=CFSAN001082_04299
NZ_APAH01000068.1	Protein Homology	CDS	17019	17798	.	+	0	ID=cds-WP_023202839.1;Parent=gene-CFSAN001082_RS28360;Dbxref=GenBank:WP_023202839.1;Name=WP_023202839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462395.1;locus_tag=CFSAN001082_RS28360;product=hypothetical protein;protein_id=WP_023202839.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	17798	18337	.	+	.	ID=gene-CFSAN001082_RS28365;Name=CFSAN001082_RS28365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28365;old_locus_tag=CFSAN001082_04304
NZ_APAH01000068.1	Protein Homology	CDS	17798	18337	.	+	0	ID=cds-WP_000951390.1;Parent=gene-CFSAN001082_RS28365;Dbxref=GenBank:WP_000951390.1;Name=WP_000951390.1;Ontology_term=GO:0043107,GO:0043683;gbkey=CDS;go_process=type IV pilus-dependent motility|0043107||IEA,type IV pilus assembly|0043683||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462394.1;locus_tag=CFSAN001082_RS28365;product=PilN domain-containing protein;protein_id=WP_000951390.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	18321	18794	.	+	.	ID=gene-CFSAN001082_RS28370;Name=CFSAN001082_RS28370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28370;old_locus_tag=CFSAN001082_04309
NZ_APAH01000068.1	Protein Homology	CDS	18321	18794	.	+	0	ID=cds-WP_023195928.1;Parent=gene-CFSAN001082_RS28370;Dbxref=GenBank:WP_023195928.1;Name=WP_023195928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462393.1;locus_tag=CFSAN001082_RS28370;product=hypothetical protein;protein_id=WP_023195928.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	18784	19185	.	+	.	ID=gene-CFSAN001082_RS28375;Name=CFSAN001082_RS28375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28375;old_locus_tag=CFSAN001082_04314
NZ_APAH01000068.1	Protein Homology	CDS	18784	19185	.	+	0	ID=cds-WP_023195929.1;Parent=gene-CFSAN001082_RS28375;Dbxref=GenBank:WP_023195929.1;Name=WP_023195929.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462392.1;locus_tag=CFSAN001082_RS28375;product=HofP DNA utilization family protein;protein_id=WP_023195929.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	19100	20338	.	+	.	ID=gene-CFSAN001082_RS28380;Name=hofQ;gbkey=Gene;gene=hofQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28380;old_locus_tag=CFSAN001082_04319
NZ_APAH01000068.1	Protein Homology	CDS	19100	20338	.	+	0	ID=cds-WP_023195930.1;Parent=gene-CFSAN001082_RS28380;Dbxref=GenBank:WP_023195930.1;Name=WP_023195930.1;Ontology_term=GO:0009306,GO:0019867;gbkey=CDS;gene=hofQ;go_component=outer membrane|0019867||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462391.1;locus_tag=CFSAN001082_RS28380;product=DNA uptake porin HofQ;protein_id=WP_023195930.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	20803	21324	.	+	.	ID=gene-CFSAN001082_RS28385;Name=aroK;gbkey=Gene;gene=aroK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28385;old_locus_tag=CFSAN001082_04324
NZ_APAH01000068.1	Protein Homology	CDS	20803	21324	.	+	0	ID=cds-WP_000818621.1;Parent=gene-CFSAN001082_RS28385;Dbxref=GenBank:WP_000818621.1;Name=WP_000818621.1;gbkey=CDS;gene=aroK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004709337.1;locus_tag=CFSAN001082_RS28385;product=shikimate kinase AroK;protein_id=WP_000818621.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	21381	22469	.	+	.	ID=gene-CFSAN001082_RS28390;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28390;old_locus_tag=CFSAN001082_04329
NZ_APAH01000068.1	Protein Homology	CDS	21381	22469	.	+	0	ID=cds-WP_000439824.1;Parent=gene-CFSAN001082_RS28390;Dbxref=GenBank:WP_000439824.1;Name=WP_000439824.1;Ontology_term=GO:0009073,GO:0009423,GO:0003856,GO:0005737;gbkey=CDS;gene=aroB;go_component=cytoplasm|0005737||IEA;go_function=3-dehydroquinate synthase activity|0003856||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA,chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462389.1;locus_tag=CFSAN001082_RS28390;product=3-dehydroquinate synthase;protein_id=WP_000439824.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	22567	23844	.	+	.	ID=gene-CFSAN001082_RS28395;Name=damX;gbkey=Gene;gene=damX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28395;old_locus_tag=CFSAN001082_04334
NZ_APAH01000068.1	Protein Homology	CDS	22567	23844	.	+	0	ID=cds-WP_023195931.1;Parent=gene-CFSAN001082_RS28395;Dbxref=GenBank:WP_023195931.1;Name=WP_023195931.1;Ontology_term=GO:0032506,GO:0042834;gbkey=CDS;gene=damX;go_function=peptidoglycan binding|0042834||IEA;go_process=cytokinetic process|0032506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462388.1;locus_tag=CFSAN001082_RS28395;product=cell division protein DamX;protein_id=WP_023195931.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	24025	24861	.	+	.	ID=gene-CFSAN001082_RS28400;Name=dam;gbkey=Gene;gene=dam;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28400;old_locus_tag=CFSAN001082_04339
NZ_APAH01000068.1	Protein Homology	CDS	24025	24861	.	+	0	ID=cds-WP_000742132.1;Parent=gene-CFSAN001082_RS28400;Dbxref=GenBank:WP_000742132.1;Name=WP_000742132.1;Ontology_term=GO:0003676,GO:0009007;gbkey=CDS;gene=dam;go_function=nucleic acid binding|0003676||IEA,site-specific DNA-methyltransferase (adenine-specific) activity|0009007||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462387.1;locus_tag=CFSAN001082_RS28400;product=adenine-specific DNA-methyltransferase;protein_id=WP_000742132.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	24879	25556	.	+	.	ID=gene-CFSAN001082_RS28405;Name=rpe;gbkey=Gene;gene=rpe;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28405;old_locus_tag=CFSAN001082_04344
NZ_APAH01000068.1	Protein Homology	CDS	24879	25556	.	+	0	ID=cds-WP_000816286.1;Parent=gene-CFSAN001082_RS28405;Dbxref=GenBank:WP_000816286.1;Name=WP_000816286.1;Ontology_term=GO:0006098,GO:0004750;gbkey=CDS;gene=rpe;go_function=D-ribulose-phosphate 3-epimerase activity|0004750||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462386.1;locus_tag=CFSAN001082_RS28405;product=ribulose-phosphate 3-epimerase;protein_id=WP_000816286.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	25549	26307	.	+	.	ID=gene-CFSAN001082_RS28410;Name=gph;gbkey=Gene;gene=gph;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28410;old_locus_tag=CFSAN001082_04349
NZ_APAH01000068.1	Protein Homology	CDS	25549	26307	.	+	0	ID=cds-WP_023253905.1;Parent=gene-CFSAN001082_RS28410;Dbxref=GenBank:WP_023253905.1;Name=WP_023253905.1;Ontology_term=GO:0005975,GO:0008967;gbkey=CDS;gene=gph;go_function=phosphoglycolate phosphatase activity|0008967||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462385.1;locus_tag=CFSAN001082_RS28410;product=phosphoglycolate phosphatase;protein_id=WP_023253905.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	26300	27304	.	+	.	ID=gene-CFSAN001082_RS28415;Name=trpS;gbkey=Gene;gene=trpS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28415;old_locus_tag=CFSAN001082_04354
NZ_APAH01000068.1	Protein Homology	CDS	26300	27304	.	+	0	ID=cds-WP_000165562.1;Parent=gene-CFSAN001082_RS28415;Dbxref=GenBank:WP_000165562.1;Name=WP_000165562.1;Ontology_term=GO:0006436,GO:0000166,GO:0004830,GO:0005524;gbkey=CDS;gene=trpS;go_function=nucleotide binding|0000166||IEA,tryptophan-tRNA ligase activity|0004830||IEA,ATP binding|0005524||IEA;go_process=tryptophanyl-tRNA aminoacylation|0006436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462384.1;locus_tag=CFSAN001082_RS28415;product=tryptophan--tRNA ligase;protein_id=WP_000165562.1;transl_table=11
NZ_APAH01000068.1	RefSeq	gene	27449	27619	.	-	.	ID=gene-CFSAN001082_RS0123000;Name=CFSAN001082_RS0123000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123000;old_locus_tag=CFSAN001082_04359
NZ_APAH01000068.1	Protein Homology	CDS	27449	27619	.	-	0	ID=cds-WP_000472323.1;Parent=gene-CFSAN001082_RS0123000;Dbxref=GenBank:WP_000472323.1;Name=WP_000472323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462383.1;locus_tag=CFSAN001082_RS0123000;product=YhfL family protein;protein_id=WP_000472323.1;transl_table=11
##sequence-region NZ_APAH01000069.1 1 6939
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000069.1	RefSeq	region	1	6939	.	+	.	ID=NZ_APAH01000069.1:1..6939;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000069.1	RefSeq	gene	29	3898	.	+	.	ID=gene-CFSAN001082_RS28420;Name=icmF;gbkey=Gene;gene=icmF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28420;old_locus_tag=CFSAN001082_04364
NZ_APAH01000069.1	Protein Homology	CDS	29	3898	.	+	0	ID=cds-WP_024150250.1;Parent=gene-CFSAN001082_RS28420;Dbxref=GenBank:WP_024150250.1;Name=WP_024150250.1;gbkey=CDS;gene=icmF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459283.1;locus_tag=CFSAN001082_RS28420;product=Type VI secretion protein IcmF;protein_id=WP_024150250.1;transl_table=11
NZ_APAH01000069.1	RefSeq	gene	3898	4665	.	+	.	ID=gene-CFSAN001082_RS28425;Name=CFSAN001082_RS28425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28425;old_locus_tag=CFSAN001082_04369
NZ_APAH01000069.1	Protein Homology	CDS	3898	4665	.	+	0	ID=cds-WP_001254130.1;Parent=gene-CFSAN001082_RS28425;Dbxref=GenBank:WP_001254130.1;Name=WP_001254130.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001254119.1;locus_tag=CFSAN001082_RS28425;product=TagF domain-containing protein;protein_id=WP_001254130.1;transl_table=11
NZ_APAH01000069.1	RefSeq	gene	4708	5178	.	+	.	ID=gene-CFSAN001082_RS28430;Name=CFSAN001082_RS28430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28430;old_locus_tag=CFSAN001082_04374
NZ_APAH01000069.1	Protein Homology	CDS	4708	5178	.	+	0	ID=cds-WP_000528843.1;Parent=gene-CFSAN001082_RS28430;Dbxref=GenBank:WP_000528843.1;Name=WP_000528843.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000528842.1;locus_tag=CFSAN001082_RS28430;product=glucosaminidase domain-containing protein;protein_id=WP_000528843.1;transl_table=11
NZ_APAH01000069.1	RefSeq	gene	5163	5624	.	+	.	ID=gene-CFSAN001082_RS28435;Name=CFSAN001082_RS28435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28435;old_locus_tag=CFSAN001082_04379
NZ_APAH01000069.1	Protein Homology	CDS	5163	5624	.	+	0	ID=cds-WP_001529547.1;Parent=gene-CFSAN001082_RS28435;Dbxref=GenBank:WP_001529547.1;Name=WP_001529547.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001670388.1;locus_tag=CFSAN001082_RS28435;product=hypothetical protein;protein_id=WP_001529547.1;transl_table=11
NZ_APAH01000069.1	RefSeq	pseudogene	5633	5755	.	+	.	ID=gene-CFSAN001082_RS48725;Name=CFSAN001082_RS48725;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48725;partial=true;pseudo=true;start_range=.,5633
NZ_APAH01000069.1	Protein Homology	CDS	5633	5755	.	+	0	ID=cds-CFSAN001082_RS48725;Parent=gene-CFSAN001082_RS48725;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459284.1;locus_tag=CFSAN001082_RS48725;partial=true;product=TagF domain-containing protein;pseudo=true;start_range=.,5633;transl_table=11
NZ_APAH01000069.1	RefSeq	gene	5752	6168	.	+	.	ID=gene-CFSAN001082_RS28440;Name=CFSAN001082_RS28440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28440;old_locus_tag=CFSAN001082_04384
NZ_APAH01000069.1	Protein Homology	CDS	5752	6168	.	+	0	ID=cds-WP_001596567.1;Parent=gene-CFSAN001082_RS28440;Dbxref=GenBank:WP_001596567.1;Name=WP_001596567.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459285.1;locus_tag=CFSAN001082_RS28440;product=DUF2195 family protein;protein_id=WP_001596567.1;transl_table=11
NZ_APAH01000069.1	RefSeq	gene	6192	6713	.	+	.	ID=gene-CFSAN001082_RS28445;Name=CFSAN001082_RS28445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28445;old_locus_tag=CFSAN001082_04389
NZ_APAH01000069.1	Protein Homology	CDS	6192	6713	.	+	0	ID=cds-WP_000968384.1;Parent=gene-CFSAN001082_RS28445;Dbxref=GenBank:WP_000968384.1;Name=WP_000968384.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459286.1;locus_tag=CFSAN001082_RS28445;product=DUF2778 domain-containing protein;protein_id=WP_000968384.1;transl_table=11
##sequence-region NZ_APAH01000070.1 1 13961
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000070.1	RefSeq	region	1	13961	.	+	.	ID=NZ_APAH01000070.1:1..13961;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000070.1	RefSeq	gene	116	1054	.	+	.	ID=gene-CFSAN001082_RS28450;Name=tdcA;gbkey=Gene;gene=tdcA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28450;old_locus_tag=CFSAN001082_04394
NZ_APAH01000070.1	Protein Homology	CDS	116	1054	.	+	0	ID=cds-WP_001094907.1;Parent=gene-CFSAN001082_RS28450;Dbxref=GenBank:WP_001094907.1;Name=WP_001094907.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=tdcA;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462159.1;locus_tag=CFSAN001082_RS28450;product=transcriptional regulator TdcA;protein_id=WP_001094907.1;transl_table=11
NZ_APAH01000070.1	RefSeq	gene	1152	2141	.	+	.	ID=gene-CFSAN001082_RS28455;Name=tdcB;gbkey=Gene;gene=tdcB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28455;old_locus_tag=CFSAN001082_04399
NZ_APAH01000070.1	Protein Homology	CDS	1152	2141	.	+	0	ID=cds-WP_000548368.1;Parent=gene-CFSAN001082_RS28455;Dbxref=GenBank:WP_000548368.1;Name=WP_000548368.1;Ontology_term=GO:0006567,GO:0004794,GO:0030170;gbkey=CDS;gene=tdcB;go_function=threonine deaminase activity|0004794||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462158.1;locus_tag=CFSAN001082_RS28455;product=bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB;protein_id=WP_000548368.1;transl_table=11
NZ_APAH01000070.1	RefSeq	gene	2162	3493	.	+	.	ID=gene-CFSAN001082_RS28460;Name=tdcC;gbkey=Gene;gene=tdcC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28460;old_locus_tag=CFSAN001082_04404
NZ_APAH01000070.1	Protein Homology	CDS	2162	3493	.	+	0	ID=cds-WP_023253908.1;Parent=gene-CFSAN001082_RS28460;Dbxref=GenBank:WP_023253908.1;Name=WP_023253908.1;gbkey=CDS;gene=tdcC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462157.1;locus_tag=CFSAN001082_RS28460;product=threonine/serine transporter TdcC;protein_id=WP_023253908.1;transl_table=11
NZ_APAH01000070.1	RefSeq	gene	3560	4768	.	+	.	ID=gene-CFSAN001082_RS28465;Name=tdcD;gbkey=Gene;gene=tdcD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28465;old_locus_tag=CFSAN001082_04409
NZ_APAH01000070.1	Protein Homology	CDS	3560	4768	.	+	0	ID=cds-WP_023253909.1;Parent=gene-CFSAN001082_RS28465;Dbxref=GenBank:WP_023253909.1;Name=WP_023253909.1;Ontology_term=GO:0006082,GO:0016310,GO:0016301;gbkey=CDS;gene=tdcD;go_function=kinase activity|0016301||IEA;go_process=organic acid metabolic process|0006082||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462156.1;locus_tag=CFSAN001082_RS28465;product=propionate kinase;protein_id=WP_023253909.1;transl_table=11
NZ_APAH01000070.1	RefSeq	gene	4802	7096	.	+	.	ID=gene-CFSAN001082_RS28470;Name=pflB;gbkey=Gene;gene=pflB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28470;old_locus_tag=CFSAN001082_04414
NZ_APAH01000070.1	Protein Homology	CDS	4802	7096	.	+	0	ID=cds-WP_023253910.1;Parent=gene-CFSAN001082_RS28470;Dbxref=GenBank:WP_023253910.1;Name=WP_023253910.1;Ontology_term=GO:0005975,GO:0008861,GO:0005737;gbkey=CDS;gene=pflB;go_component=cytoplasm|0005737||IEA;go_function=formate C-acetyltransferase activity|0008861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462155.1;locus_tag=CFSAN001082_RS28470;product=formate C-acetyltransferase;protein_id=WP_023253910.1;transl_table=11
NZ_APAH01000070.1	RefSeq	gene	7166	8530	.	+	.	ID=gene-CFSAN001082_RS28475;Name=tdcG;gbkey=Gene;gene=tdcG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28475;old_locus_tag=CFSAN001082_04419
NZ_APAH01000070.1	Protein Homology	CDS	7166	8530	.	+	0	ID=cds-WP_000622071.1;Parent=gene-CFSAN001082_RS28475;Dbxref=GenBank:WP_000622071.1;Name=WP_000622071.1;gbkey=CDS;gene=tdcG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462154.1;locus_tag=CFSAN001082_RS28475;product=L-serine ammonia-lyase;protein_id=WP_000622071.1;transl_table=11
NZ_APAH01000070.1	RefSeq	gene	8845	10176	.	+	.	ID=gene-CFSAN001082_RS28480;Name=CFSAN001082_RS28480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28480;old_locus_tag=CFSAN001082_04424
NZ_APAH01000070.1	Protein Homology	CDS	8845	10176	.	+	0	ID=cds-WP_000443187.1;Parent=gene-CFSAN001082_RS28480;Dbxref=GenBank:WP_000443187.1;Name=WP_000443187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462153.1;locus_tag=CFSAN001082_RS28480;product=amino acid permease;protein_id=WP_000443187.1;transl_table=11
NZ_APAH01000070.1	RefSeq	gene	10202	11512	.	+	.	ID=gene-CFSAN001082_RS28485;Name=CFSAN001082_RS28485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28485;old_locus_tag=CFSAN001082_04429
NZ_APAH01000070.1	Protein Homology	CDS	10202	11512	.	+	0	ID=cds-WP_000463071.1;Parent=gene-CFSAN001082_RS28485;Dbxref=GenBank:WP_000463071.1;Name=WP_000463071.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462152.1;locus_tag=CFSAN001082_RS28485;product=serine dehydratase subunit alpha family protein;protein_id=WP_000463071.1;transl_table=11
NZ_APAH01000070.1	RefSeq	gene	11625	11789	.	-	.	ID=gene-CFSAN001082_RS28490;Name=CFSAN001082_RS28490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28490;old_locus_tag=CFSAN001082_04434
NZ_APAH01000070.1	Protein Homology	CDS	11625	11789	.	-	0	ID=cds-WP_023253911.1;Parent=gene-CFSAN001082_RS28490;Dbxref=GenBank:WP_023253911.1;Name=WP_023253911.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462151.1;locus_tag=CFSAN001082_RS28490;product=hypothetical protein;protein_id=WP_023253911.1;transl_table=11
NZ_APAH01000070.1	RefSeq	gene	11813	12514	.	-	.	ID=gene-CFSAN001082_RS28495;Name=CFSAN001082_RS28495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28495;old_locus_tag=CFSAN001082_04439
NZ_APAH01000070.1	Protein Homology	CDS	11813	12514	.	-	0	ID=cds-WP_000633549.1;Parent=gene-CFSAN001082_RS28495;Dbxref=GenBank:WP_000633549.1;Name=WP_000633549.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462150.1;locus_tag=CFSAN001082_RS28495;product=pirin family protein;protein_id=WP_000633549.1;transl_table=11
NZ_APAH01000070.1	RefSeq	gene	12619	13515	.	+	.	ID=gene-CFSAN001082_RS28500;Name=yhaJ;gbkey=Gene;gene=yhaJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28500;old_locus_tag=CFSAN001082_04444
NZ_APAH01000070.1	Protein Homology	CDS	12619	13515	.	+	0	ID=cds-WP_001041026.1;Parent=gene-CFSAN001082_RS28500;Dbxref=GenBank:WP_001041026.1;Name=WP_001041026.1;gbkey=CDS;gene=yhaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462149.1;locus_tag=CFSAN001082_RS28500;product=DNA-binding transcriptional regulator YhaJ;protein_id=WP_001041026.1;transl_table=11
NZ_APAH01000070.1	RefSeq	gene	13554	13919	.	-	.	ID=gene-CFSAN001082_RS28505;Name=CFSAN001082_RS28505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28505;old_locus_tag=CFSAN001082_04449
NZ_APAH01000070.1	Protein Homology	CDS	13554	13919	.	-	0	ID=cds-WP_000384139.1;Parent=gene-CFSAN001082_RS28505;Dbxref=GenBank:WP_000384139.1;Name=WP_000384139.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462148.1;locus_tag=CFSAN001082_RS28505;product=DUF805 domain-containing protein;protein_id=WP_000384139.1;transl_table=11
##sequence-region NZ_APAH01000071.1 1 1539
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000071.1	RefSeq	region	1	1539	.	+	.	ID=NZ_APAH01000071.1:1..1539;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000071.1	RefSeq	gene	1	381	.	+	.	ID=gene-CFSAN001082_RS28510;Name=CFSAN001082_RS28510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28510;old_locus_tag=CFSAN001082_04454;partial=true;start_range=.,1
NZ_APAH01000071.1	Protein Homology	CDS	1	381	.	+	0	ID=cds-WP_023253912.1;Parent=gene-CFSAN001082_RS28510;Dbxref=GenBank:WP_023253912.1;Name=WP_023253912.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459022.1;locus_tag=CFSAN001082_RS28510;partial=true;product=winged helix-turn-helix domain-containing protein;protein_id=WP_023253912.1;start_range=.,1;transl_table=11
NZ_APAH01000071.1	RefSeq	gene	398	931	.	+	.	ID=gene-CFSAN001082_RS28515;Name=CFSAN001082_RS28515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28515;old_locus_tag=CFSAN001082_04459
NZ_APAH01000071.1	Protein Homology	CDS	398	931	.	+	0	ID=cds-WP_001068132.1;Parent=gene-CFSAN001082_RS28515;Dbxref=GenBank:WP_001068132.1;Name=WP_001068132.1;Ontology_term=GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459021.1;locus_tag=CFSAN001082_RS28515;product=glycoside hydrolase family 108 protein;protein_id=WP_001068132.1;transl_table=11
NZ_APAH01000071.1	RefSeq	gene	991	1335	.	-	.	ID=gene-CFSAN001082_RS28520;Name=CFSAN001082_RS28520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28520;old_locus_tag=CFSAN001082_04464
NZ_APAH01000071.1	Protein Homology	CDS	991	1335	.	-	0	ID=cds-WP_000026889.1;Parent=gene-CFSAN001082_RS28520;Dbxref=GenBank:WP_000026889.1;Name=WP_000026889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459020.1;locus_tag=CFSAN001082_RS28520;product=phage holin family protein;protein_id=WP_000026889.1;transl_table=11
NZ_APAH01000071.1	RefSeq	gene	1462	1539	.	-	.	ID=gene-CFSAN001082_RS48730;Name=CFSAN001082_RS48730;end_range=1539,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48730;partial=true
NZ_APAH01000071.1	Protein Homology	CDS	1462	1539	.	-	0	ID=cds-WP_237747771.1;Parent=gene-CFSAN001082_RS48730;Dbxref=GenBank:WP_237747771.1;Name=WP_237747771.1;end_range=1539,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459019.1;locus_tag=CFSAN001082_RS48730;partial=true;product=hypothetical protein;protein_id=WP_237747771.1;transl_table=11
##sequence-region NZ_APAH01000072.1 1 1776
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000072.1	RefSeq	region	1	1776	.	+	.	ID=NZ_APAH01000072.1:1..1776;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000072.1	RefSeq	gene	271	1143	.	+	.	ID=gene-CFSAN001082_RS28525;Name=CFSAN001082_RS28525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28525;old_locus_tag=CFSAN001082_04474
NZ_APAH01000072.1	Protein Homology	CDS	271	1143	.	+	0	ID=cds-WP_023253914.1;Parent=gene-CFSAN001082_RS28525;Dbxref=GenBank:WP_023253914.1;Name=WP_023253914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000517119.1;locus_tag=CFSAN001082_RS28525;product=integrase domain-containing protein;protein_id=WP_023253914.1;transl_table=11
NZ_APAH01000072.1	RefSeq	pseudogene	1167	1445	.	+	.	ID=gene-CFSAN001082_RS46580;Name=CFSAN001082_RS46580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46580;old_locus_tag=CFSAN001082_04479;partial=true;pseudo=true;start_range=.,1167
NZ_APAH01000072.1	Protein Homology	CDS	1167	1445	.	+	0	ID=cds-CFSAN001082_RS46580;Parent=gene-CFSAN001082_RS46580;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000950586.1;locus_tag=CFSAN001082_RS46580;partial=true;product=transposase;pseudo=true;start_range=.,1167;transl_table=11
##sequence-region NZ_APAH01000073.1 1 214
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000073.1	RefSeq	region	1	214	.	+	.	ID=NZ_APAH01000073.1:1..214;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000074.1 1 683
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000074.1	RefSeq	region	1	683	.	+	.	ID=NZ_APAH01000074.1:1..683;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000074.1	RefSeq	gene	1	683	.	+	.	ID=gene-CFSAN001082_RS28530;Name=CFSAN001082_RS28530;end_range=683,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28530;old_locus_tag=CFSAN001082_04489;partial=true;start_range=.,1
NZ_APAH01000074.1	Protein Homology	CDS	1	683	.	+	2	ID=cds-WP_023253916.1;Parent=gene-CFSAN001082_RS28530;Dbxref=GenBank:WP_023253916.1;Name=WP_023253916.1;Ontology_term=GO:0006355,GO:0003700;end_range=683,.;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459019.1;locus_tag=CFSAN001082_RS28530;partial=true;product=LysR family transcriptional regulator;protein_id=WP_023253916.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000075.1 1 32015
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000075.1	RefSeq	region	1	32015	.	+	.	ID=NZ_APAH01000075.1:1..32015;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000075.1	RefSeq	gene	106	369	.	+	.	ID=gene-CFSAN001082_RS28535;Name=yhcN;gbkey=Gene;gene=yhcN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28535;old_locus_tag=CFSAN001082_04494
NZ_APAH01000075.1	Protein Homology	CDS	106	369	.	+	0	ID=cds-WP_000695693.1;Parent=gene-CFSAN001082_RS28535;Dbxref=GenBank:WP_000695693.1;Name=WP_000695693.1;gbkey=CDS;gene=yhcN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462271.1;locus_tag=CFSAN001082_RS28535;product=peroxide/acid stress response protein YhcN;protein_id=WP_000695693.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	473	739	.	+	.	ID=gene-CFSAN001082_RS28540;Name=yhcN-B;gbkey=Gene;gene=yhcN-B;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28540;old_locus_tag=CFSAN001082_04499
NZ_APAH01000075.1	Protein Homology	CDS	473	739	.	+	0	ID=cds-WP_000853277.1;Parent=gene-CFSAN001082_RS28540;Dbxref=GenBank:WP_000853277.1;Name=WP_000853277.1;gbkey=CDS;gene=yhcN-B;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462272.1;locus_tag=CFSAN001082_RS28540;product=DUF1471 family stress response protein YhcN-B;protein_id=WP_000853277.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	799	1071	.	-	.	ID=gene-CFSAN001082_RS28545;Name=CFSAN001082_RS28545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28545;old_locus_tag=CFSAN001082_04504
NZ_APAH01000075.1	Protein Homology	CDS	799	1071	.	-	0	ID=cds-WP_001103887.1;Parent=gene-CFSAN001082_RS28545;Dbxref=GenBank:WP_001103887.1;Name=WP_001103887.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462273.1;locus_tag=CFSAN001082_RS28545;product=barstar family protein;protein_id=WP_001103887.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	1243	3210	.	-	.	ID=gene-CFSAN001082_RS28550;Name=aaeB;gbkey=Gene;gene=aaeB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28550;old_locus_tag=CFSAN001082_04509
NZ_APAH01000075.1	Protein Homology	CDS	1243	3210	.	-	0	ID=cds-WP_000510915.1;Parent=gene-CFSAN001082_RS28550;Dbxref=GenBank:WP_000510915.1;Name=WP_000510915.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=aaeB;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462274.1;locus_tag=CFSAN001082_RS28550;product=p-hydroxybenzoic acid efflux pump subunit AaeB;protein_id=WP_000510915.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	3216	4148	.	-	.	ID=gene-CFSAN001082_RS28555;Name=aaeA;gbkey=Gene;gene=aaeA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28555;old_locus_tag=CFSAN001082_04514
NZ_APAH01000075.1	Protein Homology	CDS	3216	4148	.	-	0	ID=cds-WP_000855134.1;Parent=gene-CFSAN001082_RS28555;Dbxref=GenBank:WP_000855134.1;Name=WP_000855134.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=aaeA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462275.1;locus_tag=CFSAN001082_RS28555;product=p-hydroxybenzoic acid efflux pump subunit AaeA;protein_id=WP_000855134.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	4156	4359	.	-	.	ID=gene-CFSAN001082_RS28560;Name=aaeX;gbkey=Gene;gene=aaeX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28560;old_locus_tag=CFSAN001082_04519
NZ_APAH01000075.1	Protein Homology	CDS	4156	4359	.	-	0	ID=cds-WP_000051840.1;Parent=gene-CFSAN001082_RS28560;Dbxref=GenBank:WP_000051840.1;Name=WP_000051840.1;gbkey=CDS;gene=aaeX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000051842.1;locus_tag=CFSAN001082_RS28560;product=p-hydroxybenzoic acid efflux pump operon protein AaeX;protein_id=WP_000051840.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	4541	5470	.	+	.	ID=gene-CFSAN001082_RS28565;Name=aaeR;gbkey=Gene;gene=aaeR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28565;old_locus_tag=CFSAN001082_04524
NZ_APAH01000075.1	Protein Homology	CDS	4541	5470	.	+	0	ID=cds-WP_000440300.1;Parent=gene-CFSAN001082_RS28565;Dbxref=GenBank:WP_000440300.1;Name=WP_000440300.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=aaeR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462277.1;locus_tag=CFSAN001082_RS28565;product=HTH-type transcriptional activator AaeR;protein_id=WP_000440300.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	5593	7038	.	-	.	ID=gene-CFSAN001082_RS28570;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28570;old_locus_tag=CFSAN001082_04529
NZ_APAH01000075.1	Protein Homology	CDS	5593	7038	.	-	0	ID=cds-WP_000055936.1;Parent=gene-CFSAN001082_RS28570;Dbxref=GenBank:WP_000055936.1;Name=WP_000055936.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=tldD;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007888214.1;locus_tag=CFSAN001082_RS28570;product=metalloprotease TldD;protein_id=WP_000055936.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	7183	10983	.	-	.	ID=gene-CFSAN001082_RS28575;Name=yhdP;gbkey=Gene;gene=yhdP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28575;old_locus_tag=CFSAN001082_04534
NZ_APAH01000075.1	Protein Homology	CDS	7183	10983	.	-	0	ID=cds-WP_023253917.1;Parent=gene-CFSAN001082_RS28575;Dbxref=GenBank:WP_023253917.1;Name=WP_023253917.1;gbkey=CDS;gene=yhdP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462279.1;locus_tag=CFSAN001082_RS28575;product=AsmA2 domain-containing protein YhdP;protein_id=WP_023253917.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	11094	12563	.	-	.	ID=gene-CFSAN001082_RS28580;Name=rng;gbkey=Gene;gene=rng;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28580;old_locus_tag=CFSAN001082_04539
NZ_APAH01000075.1	Protein Homology	CDS	11094	12563	.	-	0	ID=cds-WP_000123188.1;Parent=gene-CFSAN001082_RS28580;Dbxref=GenBank:WP_000123188.1;Name=WP_000123188.1;Ontology_term=GO:0006396,GO:0003723,GO:0004540;gbkey=CDS;gene=rng;go_function=RNA binding|0003723||IEA,RNA nuclease activity|0004540||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006818051.1;locus_tag=CFSAN001082_RS28580;product=ribonuclease G;protein_id=WP_000123188.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	12553	13146	.	-	.	ID=gene-CFSAN001082_RS28585;Name=CFSAN001082_RS28585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28585;old_locus_tag=CFSAN001082_04544
NZ_APAH01000075.1	Protein Homology	CDS	12553	13146	.	-	0	ID=cds-WP_000210306.1;Parent=gene-CFSAN001082_RS28585;Dbxref=GenBank:WP_000210306.1;Name=WP_000210306.1;Ontology_term=GO:0009117,GO:0009146,GO:0000166,GO:0047429;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,nucleoside triphosphate diphosphatase activity|0047429||IEA;go_process=nucleotide metabolic process|0009117||IEA,purine nucleoside triphosphate catabolic process|0009146||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462281.1;locus_tag=CFSAN001082_RS28585;product=Maf family protein;protein_id=WP_000210306.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	13155	13643	.	-	.	ID=gene-CFSAN001082_RS28590;Name=mreD;gbkey=Gene;gene=mreD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28590;old_locus_tag=CFSAN001082_04549
NZ_APAH01000075.1	Protein Homology	CDS	13155	13643	.	-	0	ID=cds-WP_000179403.1;Parent=gene-CFSAN001082_RS28590;Dbxref=GenBank:WP_000179403.1;Name=WP_000179403.1;gbkey=CDS;gene=mreD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001487551.1;locus_tag=CFSAN001082_RS28590;product=rod shape-determining protein MreD;protein_id=WP_000179403.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	13646	14698	.	-	.	ID=gene-CFSAN001082_RS28595;Name=mreC;gbkey=Gene;gene=mreC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28595;old_locus_tag=CFSAN001082_04554
NZ_APAH01000075.1	Protein Homology	CDS	13646	14698	.	-	0	ID=cds-WP_000802538.1;Parent=gene-CFSAN001082_RS28595;Dbxref=GenBank:WP_000802538.1;Name=WP_000802538.1;Ontology_term=GO:0008360;gbkey=CDS;gene=mreC;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462283.1;locus_tag=CFSAN001082_RS28595;product=rod shape-determining protein MreC;protein_id=WP_000802538.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	14763	15806	.	-	.	ID=gene-CFSAN001082_RS28600;Name=mreB;gbkey=Gene;gene=mreB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28600;old_locus_tag=CFSAN001082_04559
NZ_APAH01000075.1	Protein Homology	CDS	14763	15806	.	-	0	ID=cds-WP_000913396.1;Parent=gene-CFSAN001082_RS28600;Dbxref=GenBank:WP_000913396.1;Name=WP_000913396.1;gbkey=CDS;gene=mreB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000913396.1;locus_tag=CFSAN001082_RS28600;product=rod shape-determining protein MreB;protein_id=WP_000913396.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	16114	18054	.	-	.	ID=gene-CFSAN001082_RS28605;Name=csrD;gbkey=Gene;gene=csrD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28605;old_locus_tag=CFSAN001082_04564
NZ_APAH01000075.1	Protein Homology	CDS	16114	18054	.	-	0	ID=cds-WP_001241381.1;Parent=gene-CFSAN001082_RS28605;Dbxref=GenBank:WP_001241381.1;Name=WP_001241381.1;gbkey=CDS;gene=csrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462285.1;locus_tag=CFSAN001082_RS28605;product=RNase E specificity factor CsrD;protein_id=WP_001241381.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	18258	19232	.	+	.	ID=gene-CFSAN001082_RS28610;Name=CFSAN001082_RS28610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28610;old_locus_tag=CFSAN001082_04569
NZ_APAH01000075.1	Protein Homology	CDS	18258	19232	.	+	0	ID=cds-WP_001148246.1;Parent=gene-CFSAN001082_RS28610;Dbxref=GenBank:WP_001148246.1;Name=WP_001148246.1;Ontology_term=GO:0004022,GO:0008270,GO:0030554;gbkey=CDS;go_function=alcohol dehydrogenase (NAD+) activity|0004022||IEA,zinc ion binding|0008270||IEA,adenyl nucleotide binding|0030554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462286.1;locus_tag=CFSAN001082_RS28610;product=MDR family oxidoreductase;protein_id=WP_001148246.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	19345	20349	.	+	.	ID=gene-CFSAN001082_RS28615;Name=msrP;gbkey=Gene;gene=msrP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28615;old_locus_tag=CFSAN001082_04574
NZ_APAH01000075.1	Protein Homology	CDS	19345	20349	.	+	0	ID=cds-WP_023253918.1;Parent=gene-CFSAN001082_RS28615;Dbxref=GenBank:WP_023253918.1;Name=WP_023253918.1;Ontology_term=GO:0030091,GO:0016667,GO:0043546;gbkey=CDS;gene=msrP;go_function=oxidoreductase activity%2C acting on a sulfur group of donors|0016667||IEA,molybdopterin cofactor binding|0043546||IEA;go_process=protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462287.1;locus_tag=CFSAN001082_RS28615;product=protein-methionine-sulfoxide reductase catalytic subunit MsrP;protein_id=WP_023253918.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	20350	20949	.	+	.	ID=gene-CFSAN001082_RS28620;Name=msrQ;gbkey=Gene;gene=msrQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28620;old_locus_tag=CFSAN001082_04579
NZ_APAH01000075.1	Protein Homology	CDS	20350	20949	.	+	0	ID=cds-WP_023253919.1;Parent=gene-CFSAN001082_RS28620;Dbxref=GenBank:WP_023253919.1;Name=WP_023253919.1;gbkey=CDS;gene=msrQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462288.1;locus_tag=CFSAN001082_RS28620;product=protein-methionine-sulfoxide reductase heme-binding subunit MsrQ;protein_id=WP_023253919.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	21342	21812	.	+	.	ID=gene-CFSAN001082_RS28625;Name=accB;gbkey=Gene;gene=accB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28625;old_locus_tag=CFSAN001082_04584
NZ_APAH01000075.1	Protein Homology	CDS	21342	21812	.	+	0	ID=cds-WP_000354626.1;Parent=gene-CFSAN001082_RS28625;Dbxref=GenBank:WP_000354626.1;Name=WP_000354626.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accB;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462289.1;locus_tag=CFSAN001082_RS28625;product=acetyl-CoA carboxylase biotin carboxyl carrier protein;protein_id=WP_000354626.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	21823	23172	.	+	.	ID=gene-CFSAN001082_RS28630;Name=accC;gbkey=Gene;gene=accC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28630;old_locus_tag=CFSAN001082_04589
NZ_APAH01000075.1	Protein Homology	CDS	21823	23172	.	+	0	ID=cds-WP_000884627.1;Parent=gene-CFSAN001082_RS28630;Dbxref=GenBank:WP_000884627.1;Name=WP_000884627.1;Ontology_term=GO:0004075,GO:0016874,GO:0009317;gbkey=CDS;gene=accC;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=biotin carboxylase activity|0004075||IEA,ligase activity|0016874||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009483995.1;locus_tag=CFSAN001082_RS28630;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=WP_000884627.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	23281	23523	.	+	.	ID=gene-CFSAN001082_RS28635;Name=CFSAN001082_RS28635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28635;old_locus_tag=CFSAN001082_04594
NZ_APAH01000075.1	Protein Homology	CDS	23281	23523	.	+	0	ID=cds-WP_000340018.1;Parent=gene-CFSAN001082_RS28635;Dbxref=GenBank:WP_000340018.1;Name=WP_000340018.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462291.1;locus_tag=CFSAN001082_RS28635;product=YhdT family protein;protein_id=WP_000340018.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	23513	24964	.	+	.	ID=gene-CFSAN001082_RS28640;Name=panF;gbkey=Gene;gene=panF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28640;old_locus_tag=CFSAN001082_04599
NZ_APAH01000075.1	Protein Homology	CDS	23513	24964	.	+	0	ID=cds-WP_001175682.1;Parent=gene-CFSAN001082_RS28640;Dbxref=GenBank:WP_001175682.1;Name=WP_001175682.1;Ontology_term=GO:0015887,GO:0036376,GO:0015081,GO:0015233,GO:0016020;gbkey=CDS;gene=panF;go_component=membrane|0016020||IEA;go_function=sodium ion transmembrane transporter activity|0015081||IEA,pantothenate transmembrane transporter activity|0015233||IEA;go_process=pantothenate transmembrane transport|0015887||IEA,sodium ion export across plasma membrane|0036376||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462292.1;locus_tag=CFSAN001082_RS28640;product=sodium/pantothenate symporter;protein_id=WP_001175682.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	24976	25857	.	+	.	ID=gene-CFSAN001082_RS28645;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28645;old_locus_tag=CFSAN001082_04604
NZ_APAH01000075.1	Protein Homology	CDS	24976	25857	.	+	0	ID=cds-WP_023253920.1;Parent=gene-CFSAN001082_RS28645;Dbxref=GenBank:WP_023253920.1;Name=WP_023253920.1;Ontology_term=GO:0036211,GO:0008757;gbkey=CDS;gene=prmA;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462293.1;locus_tag=CFSAN001082_RS28645;product=50S ribosomal protein L11 methyltransferase;protein_id=WP_023253920.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	26518	27483	.	+	.	ID=gene-CFSAN001082_RS28650;Name=dusB;gbkey=Gene;gene=dusB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28650;old_locus_tag=CFSAN001082_04609
NZ_APAH01000075.1	Protein Homology	CDS	26518	27483	.	+	0	ID=cds-WP_001219664.1;Parent=gene-CFSAN001082_RS28650;Dbxref=GenBank:WP_001219664.1;Name=WP_001219664.1;Ontology_term=GO:0008033,GO:0017150,GO:0050660;gbkey=CDS;gene=dusB;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008785970.1;locus_tag=CFSAN001082_RS28650;product=tRNA dihydrouridine synthase DusB;protein_id=WP_001219664.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	27509	27805	.	+	.	ID=gene-CFSAN001082_RS28655;Name=fis;gbkey=Gene;gene=fis;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28655;old_locus_tag=CFSAN001082_04614
NZ_APAH01000075.1	Protein Homology	CDS	27509	27805	.	+	0	ID=cds-WP_000462905.1;Parent=gene-CFSAN001082_RS28655;Dbxref=GenBank:WP_000462905.1;Name=WP_000462905.1;gbkey=CDS;gene=fis;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001465625.1;locus_tag=CFSAN001082_RS28655;product=DNA-binding transcriptional regulator Fis;protein_id=WP_000462905.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	27891	28775	.	+	.	ID=gene-CFSAN001082_RS28660;Name=yhdJ;gbkey=Gene;gene=yhdJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28660;old_locus_tag=CFSAN001082_04619
NZ_APAH01000075.1	Protein Homology	CDS	27891	28775	.	+	0	ID=cds-WP_000642611.1;Parent=gene-CFSAN001082_RS28660;Dbxref=GenBank:WP_000642611.1;Name=WP_000642611.1;Ontology_term=GO:0003677,GO:0008170;gbkey=CDS;gene=yhdJ;go_function=DNA binding|0003677||IEA,N-methyltransferase activity|0008170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462296.1;locus_tag=CFSAN001082_RS28660;product=adenine-specific DNA-methyltransferase;protein_id=WP_000642611.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	28858	29022	.	+	.	ID=gene-CFSAN001082_RS28665;Name=CFSAN001082_RS28665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28665;old_locus_tag=CFSAN001082_04624
NZ_APAH01000075.1	Protein Homology	CDS	28858	29022	.	+	0	ID=cds-WP_000620015.1;Parent=gene-CFSAN001082_RS28665;Dbxref=GenBank:WP_000620015.1;Name=WP_000620015.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462297.1;locus_tag=CFSAN001082_RS28665;product=DUF2556 family protein;protein_id=WP_000620015.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	29173	31272	.	+	.	ID=gene-CFSAN001082_RS28670;Name=CFSAN001082_RS28670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28670;old_locus_tag=CFSAN001082_04629
NZ_APAH01000075.1	Protein Homology	CDS	29173	31272	.	+	0	ID=cds-WP_023253921.1;Parent=gene-CFSAN001082_RS28670;Dbxref=GenBank:WP_023253921.1;Name=WP_023253921.1;Ontology_term=GO:0005525,GO:0046872,GO:0052621,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=GTP binding|0005525||IEA,metal ion binding|0046872||IEA,diguanylate cyclase activity|0052621||IEA,cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462298.1;locus_tag=CFSAN001082_RS28670;product=putative bifunctional diguanylate cyclase/phosphodiesterase;protein_id=WP_023253921.1;transl_table=11
NZ_APAH01000075.1	RefSeq	gene	31275	31937	.	-	.	ID=gene-CFSAN001082_RS28675;Name=envR;gbkey=Gene;gene=envR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28675;old_locus_tag=CFSAN001082_04634
NZ_APAH01000075.1	Protein Homology	CDS	31275	31937	.	-	0	ID=cds-WP_001085725.1;Parent=gene-CFSAN001082_RS28675;Dbxref=GenBank:WP_001085725.1;Name=WP_001085725.1;gbkey=CDS;gene=envR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462299.1;locus_tag=CFSAN001082_RS28675;product=acrEF/envCD operon transcriptional regulator;protein_id=WP_001085725.1;transl_table=11
##sequence-region NZ_APAH01000076.1 1 17606
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000076.1	RefSeq	region	1	17606	.	+	.	ID=NZ_APAH01000076.1:1..17606;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000076.1	RefSeq	gene	58	1368	.	+	.	ID=gene-CFSAN001082_RS28680;Name=CFSAN001082_RS28680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28680;old_locus_tag=CFSAN001082_04639
NZ_APAH01000076.1	Protein Homology	CDS	58	1368	.	+	0	ID=cds-WP_001092104.1;Parent=gene-CFSAN001082_RS28680;Dbxref=GenBank:WP_001092104.1;Name=WP_001092104.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462598.1;locus_tag=CFSAN001082_RS28680;product=MFS transporter;protein_id=WP_001092104.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	1451	2272	.	-	.	ID=gene-CFSAN001082_RS28685;Name=cysE;gbkey=Gene;gene=cysE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28685;old_locus_tag=CFSAN001082_04644
NZ_APAH01000076.1	Protein Homology	CDS	1451	2272	.	-	0	ID=cds-WP_001112114.1;Parent=gene-CFSAN001082_RS28685;Dbxref=GenBank:WP_001112114.1;Name=WP_001112114.1;Ontology_term=GO:0006535,GO:0009001;gbkey=CDS;gene=cysE;go_function=serine O-acetyltransferase activity|0009001||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001112113.1;locus_tag=CFSAN001082_RS28685;product=serine O-acetyltransferase;protein_id=WP_001112114.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	2350	3369	.	-	.	ID=gene-CFSAN001082_RS28690;Name=gpsA;gbkey=Gene;gene=gpsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28690;old_locus_tag=CFSAN001082_04649
NZ_APAH01000076.1	Protein Homology	CDS	2350	3369	.	-	0	ID=cds-WP_001076596.1;Parent=gene-CFSAN001082_RS28690;Dbxref=GenBank:WP_001076596.1;Name=WP_001076596.1;Ontology_term=GO:0006072,GO:0047952;gbkey=CDS;gene=gpsA;go_function=glycerol-3-phosphate dehydrogenase [NAD(P)+] activity|0047952||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462600.1;locus_tag=CFSAN001082_RS28690;product=NAD(P)H-dependent glycerol-3-phosphate dehydrogenase;protein_id=WP_001076596.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	3369	3836	.	-	.	ID=gene-CFSAN001082_RS28695;Name=secB;gbkey=Gene;gene=secB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28695;old_locus_tag=CFSAN001082_04654
NZ_APAH01000076.1	Protein Homology	CDS	3369	3836	.	-	0	ID=cds-WP_000003370.1;Parent=gene-CFSAN001082_RS28695;Dbxref=GenBank:WP_000003370.1;Name=WP_000003370.1;gbkey=CDS;gene=secB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015369180.1;locus_tag=CFSAN001082_RS28695;product=protein-export chaperone SecB;protein_id=WP_000003370.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	3880	4131	.	-	.	ID=gene-CFSAN001082_RS28700;Name=grxC;gbkey=Gene;gene=grxC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28700;old_locus_tag=CFSAN001082_04659
NZ_APAH01000076.1	Protein Homology	CDS	3880	4131	.	-	0	ID=cds-WP_001273795.1;Parent=gene-CFSAN001082_RS28700;Dbxref=GenBank:WP_001273795.1;Name=WP_001273795.1;gbkey=CDS;gene=grxC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462602.1;locus_tag=CFSAN001082_RS28700;product=glutaredoxin 3;protein_id=WP_001273795.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	4217	4648	.	-	.	ID=gene-CFSAN001082_RS28705;Name=CFSAN001082_RS28705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28705;old_locus_tag=CFSAN001082_04664
NZ_APAH01000076.1	Protein Homology	CDS	4217	4648	.	-	0	ID=cds-WP_001156179.1;Parent=gene-CFSAN001082_RS28705;Dbxref=GenBank:WP_001156179.1;Name=WP_001156179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462603.1;locus_tag=CFSAN001082_RS28705;product=rhodanese-like domain-containing protein;protein_id=WP_001156179.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	4895	6439	.	+	.	ID=gene-CFSAN001082_RS28710;Name=gpmM;gbkey=Gene;gene=gpmM;gene_biotype=protein_coding;gene_synonym=pgmI;locus_tag=CFSAN001082_RS28710;old_locus_tag=CFSAN001082_04669
NZ_APAH01000076.1	Protein Homology	CDS	4895	6439	.	+	0	ID=cds-WP_023253923.1;Parent=gene-CFSAN001082_RS28710;Dbxref=GenBank:WP_023253923.1;Name=WP_023253923.1;Ontology_term=GO:0006007,GO:0004619;gbkey=CDS;gene=gpmM;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glucose catabolic process|0006007||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462604.1;locus_tag=CFSAN001082_RS28710;product=2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase;protein_id=WP_023253923.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	6473	7732	.	+	.	ID=gene-CFSAN001082_RS28715;Name=envC;gbkey=Gene;gene=envC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28715;old_locus_tag=CFSAN001082_04674
NZ_APAH01000076.1	Protein Homology	CDS	6473	7732	.	+	0	ID=cds-WP_058814511.1;Parent=gene-CFSAN001082_RS28715;Dbxref=GenBank:WP_058814511.1;Name=WP_058814511.1;gbkey=CDS;gene=envC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418070.6;locus_tag=CFSAN001082_RS28715;product=murein hydrolase activator EnvC;protein_id=WP_058814511.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	7736	8698	.	+	.	ID=gene-CFSAN001082_RS28720;Name=CFSAN001082_RS28720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28720;old_locus_tag=CFSAN001082_04679
NZ_APAH01000076.1	Protein Homology	CDS	7736	8698	.	+	0	ID=cds-WP_001135519.1;Parent=gene-CFSAN001082_RS28720;Dbxref=GenBank:WP_001135519.1;Name=WP_001135519.1;Ontology_term=GO:0005975,GO:0016810;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462606.1;locus_tag=CFSAN001082_RS28720;product=divergent polysaccharide deacetylase family protein;protein_id=WP_001135519.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	8685	9719	.	-	.	ID=gene-CFSAN001082_RS28725;Name=CFSAN001082_RS28725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28725;old_locus_tag=CFSAN001082_04684
NZ_APAH01000076.1	Protein Homology	CDS	8685	9719	.	-	0	ID=cds-WP_023253924.1;Parent=gene-CFSAN001082_RS28725;Dbxref=GenBank:WP_023253924.1;Name=WP_023253924.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462607.1;locus_tag=CFSAN001082_RS28725;product=glycosyltransferase;protein_id=WP_023253924.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	10012	11037	.	-	.	ID=gene-CFSAN001082_RS28730;Name=tdh;gbkey=Gene;gene=tdh;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28730;old_locus_tag=CFSAN001082_04689
NZ_APAH01000076.1	Protein Homology	CDS	10012	11037	.	-	0	ID=cds-WP_000645990.1;Parent=gene-CFSAN001082_RS28730;Dbxref=GenBank:WP_000645990.1;Name=WP_000645990.1;Ontology_term=GO:0006567,GO:0008743;gbkey=CDS;gene=tdh;go_function=L-threonine 3-dehydrogenase activity|0008743||IEA;go_process=threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120462.1;locus_tag=CFSAN001082_RS28730;product=L-threonine 3-dehydrogenase;protein_id=WP_000645990.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	11047	12243	.	-	.	ID=gene-CFSAN001082_RS28735;Name=kbl;gbkey=Gene;gene=kbl;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28735;old_locus_tag=CFSAN001082_04694
NZ_APAH01000076.1	Protein Homology	CDS	11047	12243	.	-	0	ID=cds-WP_001213790.1;Parent=gene-CFSAN001082_RS28735;Dbxref=GenBank:WP_001213790.1;Name=WP_001213790.1;Ontology_term=GO:0006567,GO:0008890;gbkey=CDS;gene=kbl;go_function=glycine C-acetyltransferase activity|0008890||IEA;go_process=threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020239151.1;locus_tag=CFSAN001082_RS28735;product=glycine C-acetyltransferase;protein_id=WP_001213790.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	12446	13378	.	+	.	ID=gene-CFSAN001082_RS28740;Name=rfaD;gbkey=Gene;gene=rfaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28740;old_locus_tag=CFSAN001082_04699
NZ_APAH01000076.1	Protein Homology	CDS	12446	13378	.	+	0	ID=cds-WP_000587771.1;Parent=gene-CFSAN001082_RS28740;Dbxref=GenBank:WP_000587771.1;Name=WP_000587771.1;Ontology_term=GO:0005975,GO:0008712;gbkey=CDS;gene=rfaD;go_function=ADP-glyceromanno-heptose 6-epimerase activity|0008712||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020233050.1;locus_tag=CFSAN001082_RS28740;product=ADP-glyceromanno-heptose 6-epimerase;protein_id=WP_000587771.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	13381	14427	.	+	.	ID=gene-CFSAN001082_RS28745;Name=rfaF;gbkey=Gene;gene=rfaF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28745;old_locus_tag=CFSAN001082_04704
NZ_APAH01000076.1	Protein Homology	CDS	13381	14427	.	+	0	ID=cds-WP_000699197.1;Parent=gene-CFSAN001082_RS28745;Dbxref=GenBank:WP_000699197.1;Name=WP_000699197.1;Ontology_term=GO:0009103,GO:0016757;gbkey=CDS;gene=rfaF;go_function=glycosyltransferase activity|0016757||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462611.1;locus_tag=CFSAN001082_RS28745;product=ADP-heptose--LPS heptosyltransferase RfaF;protein_id=WP_000699197.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	14427	15380	.	+	.	ID=gene-CFSAN001082_RS28750;Name=rfaC;gbkey=Gene;gene=rfaC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28750;old_locus_tag=CFSAN001082_04709
NZ_APAH01000076.1	Protein Homology	CDS	14427	15380	.	+	0	ID=cds-WP_001264611.1;Parent=gene-CFSAN001082_RS28750;Dbxref=GenBank:WP_001264611.1;Name=WP_001264611.1;Ontology_term=GO:0009244,GO:0008920;gbkey=CDS;gene=rfaC;go_function=lipopolysaccharide heptosyltransferase activity|0008920||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462612.1;locus_tag=CFSAN001082_RS28750;product=lipopolysaccharide heptosyltransferase RfaC;protein_id=WP_001264611.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	15420	16634	.	+	.	ID=gene-CFSAN001082_RS28755;Name=rfaL;gbkey=Gene;gene=rfaL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28755;old_locus_tag=CFSAN001082_04714
NZ_APAH01000076.1	Protein Homology	CDS	15420	16634	.	+	0	ID=cds-WP_023253925.1;Parent=gene-CFSAN001082_RS28755;Dbxref=GenBank:WP_023253925.1;Name=WP_023253925.1;gbkey=CDS;gene=rfaL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462613.1;locus_tag=CFSAN001082_RS28755;product=O-antigen ligase RfaL;protein_id=WP_023253925.1;transl_table=11
NZ_APAH01000076.1	RefSeq	gene	16692	17606	.	-	.	ID=gene-CFSAN001082_RS0123015;Name=CFSAN001082_RS0123015;end_range=17606,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123015;old_locus_tag=CFSAN001082_04719;partial=true
NZ_APAH01000076.1	Protein Homology	CDS	16692	17606	.	-	0	ID=cds-WP_023253926.1;Parent=gene-CFSAN001082_RS0123015;Dbxref=GenBank:WP_023253926.1;Name=WP_023253926.1;Ontology_term=GO:0016757;end_range=17606,.;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462614.1;locus_tag=CFSAN001082_RS0123015;partial=true;product=glycosyltransferase;protein_id=WP_023253926.1;transl_table=11
##sequence-region NZ_APAH01000077.1 1 356
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000077.1	RefSeq	region	1	356	.	+	.	ID=NZ_APAH01000077.1:1..356;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000077.1	RefSeq	gene	231	356	.	-	.	ID=gene-CFSAN001082_RS28760;Name=CFSAN001082_RS28760;end_range=356,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28760;old_locus_tag=CFSAN001082_04724;partial=true
NZ_APAH01000077.1	Protein Homology	CDS	231	356	.	-	0	ID=cds-WP_031612659.1;Parent=gene-CFSAN001082_RS28760;Dbxref=GenBank:WP_031612659.1;Name=WP_031612659.1;Ontology_term=GO:0003676;end_range=356,.;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312468.1;locus_tag=CFSAN001082_RS28760;partial=true;product=cold shock domain-containing protein;protein_id=WP_031612659.1;transl_table=11
##sequence-region NZ_APAH01000078.1 1 17257
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000078.1	RefSeq	region	1	17257	.	+	.	ID=NZ_APAH01000078.1:1..17257;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000078.1	RefSeq	gene	9	854	.	+	.	ID=gene-CFSAN001082_RS28765;Name=zirU;gbkey=Gene;gene=zirU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28765;old_locus_tag=CFSAN001082_04729
NZ_APAH01000078.1	Protein Homology	CDS	9	854	.	+	0	ID=cds-WP_023253927.1;Parent=gene-CFSAN001082_RS28765;Dbxref=GenBank:WP_023253927.1;Name=WP_023253927.1;gbkey=CDS;gene=zirU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460628.1;locus_tag=CFSAN001082_RS28765;product=two-partner-like secretion system exoprotein ZirU;protein_id=WP_023253927.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	929	2911	.	+	.	ID=gene-CFSAN001082_RS28770;Name=zirT;gbkey=Gene;gene=zirT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28770;old_locus_tag=CFSAN001082_04734
NZ_APAH01000078.1	Protein Homology	CDS	929	2911	.	+	0	ID=cds-WP_023253928.1;Parent=gene-CFSAN001082_RS28770;Dbxref=GenBank:WP_023253928.1;Name=WP_023253928.1;gbkey=CDS;gene=zirT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460627.1;locus_tag=CFSAN001082_RS28770;product=two-partner secretion translocator ZirT;protein_id=WP_023253928.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	2938	3768	.	+	.	ID=gene-CFSAN001082_RS28775;Name=CFSAN001082_RS28775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28775;old_locus_tag=CFSAN001082_04739
NZ_APAH01000078.1	Protein Homology	CDS	2938	3768	.	+	0	ID=cds-WP_023253929.1;Parent=gene-CFSAN001082_RS28775;Dbxref=GenBank:WP_023253929.1;Name=WP_023253929.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001531580.1;locus_tag=CFSAN001082_RS28775;product=ZirS family two-partner secretion-like system exoprotein;protein_id=WP_023253929.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	3771	4289	.	+	.	ID=gene-CFSAN001082_RS28780;Name=CFSAN001082_RS28780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28780;old_locus_tag=CFSAN001082_04744
NZ_APAH01000078.1	Protein Homology	CDS	3771	4289	.	+	0	ID=cds-WP_001522595.1;Parent=gene-CFSAN001082_RS28780;Dbxref=GenBank:WP_001522595.1;Name=WP_001522595.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001530156.1;locus_tag=CFSAN001082_RS28780;product=redoxin family protein;protein_id=WP_001522595.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	4396	4734	.	-	.	ID=gene-CFSAN001082_RS28785;Name=CFSAN001082_RS28785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28785;old_locus_tag=CFSAN001082_04749
NZ_APAH01000078.1	Protein Homology	CDS	4396	4734	.	-	0	ID=cds-WP_023253930.1;Parent=gene-CFSAN001082_RS28785;Dbxref=GenBank:WP_023253930.1;Name=WP_023253930.1;Ontology_term=GO:0017000,GO:0004497,GO:0016491;gbkey=CDS;go_function=monooxygenase activity|0004497||IEA,oxidoreductase activity|0016491||IEA;go_process=antibiotic biosynthetic process|0017000||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000051808.1;locus_tag=CFSAN001082_RS28785;product=antibiotic biosynthesis monooxygenase family protein;protein_id=WP_023253930.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	4762	5448	.	-	.	ID=gene-CFSAN001082_RS28790;Name=CFSAN001082_RS28790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28790;old_locus_tag=CFSAN001082_04754
NZ_APAH01000078.1	Protein Homology	CDS	4762	5448	.	-	0	ID=cds-WP_023250372.1;Parent=gene-CFSAN001082_RS28790;Dbxref=GenBank:WP_023250372.1;Name=WP_023250372.1;Ontology_term=GO:0003723;gbkey=CDS;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460624.1;locus_tag=CFSAN001082_RS28790;product=B3/B4 domain-containing protein;protein_id=WP_023250372.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	5492	6094	.	+	.	ID=gene-CFSAN001082_RS28795;Name=CFSAN001082_RS28795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28795;old_locus_tag=CFSAN001082_04759
NZ_APAH01000078.1	Protein Homology	CDS	5492	6094	.	+	0	ID=cds-WP_000163362.1;Parent=gene-CFSAN001082_RS28795;Dbxref=GenBank:WP_000163362.1;Name=WP_000163362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460623.1;locus_tag=CFSAN001082_RS28795;product=helix-turn-helix domain-containing protein;protein_id=WP_000163362.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	6176	7207	.	-	.	ID=gene-CFSAN001082_RS28800;Name=CFSAN001082_RS28800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28800;old_locus_tag=CFSAN001082_04764
NZ_APAH01000078.1	Protein Homology	CDS	6176	7207	.	-	0	ID=cds-WP_000493671.1;Parent=gene-CFSAN001082_RS28800;Dbxref=GenBank:WP_000493671.1;Name=WP_000493671.1;Ontology_term=GO:0055085,GO:0008381,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=mechanosensitive monoatomic ion channel activity|0008381||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460622.1;locus_tag=CFSAN001082_RS28800;product=mechanosensitive ion channel family protein;protein_id=WP_000493671.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	7446	7700	.	+	.	ID=gene-CFSAN001082_RS28805;Name=CFSAN001082_RS28805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28805;old_locus_tag=CFSAN001082_04769
NZ_APAH01000078.1	Protein Homology	CDS	7446	7700	.	+	0	ID=cds-WP_000605645.1;Parent=gene-CFSAN001082_RS28805;Dbxref=GenBank:WP_000605645.1;Name=WP_000605645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460621.1;locus_tag=CFSAN001082_RS28805;product=DUF2534 family protein;protein_id=WP_000605645.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	7755	8702	.	-	.	ID=gene-CFSAN001082_RS28810;Name=uspE;gbkey=Gene;gene=uspE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28810;old_locus_tag=CFSAN001082_04774
NZ_APAH01000078.1	Protein Homology	CDS	7755	8702	.	-	0	ID=cds-WP_001262138.1;Parent=gene-CFSAN001082_RS28810;Dbxref=GenBank:WP_001262138.1;Name=WP_001262138.1;gbkey=CDS;gene=uspE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460620.1;locus_tag=CFSAN001082_RS28810;product=universal stress protein UspE;protein_id=WP_001262138.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	8853	9605	.	-	.	ID=gene-CFSAN001082_RS28815;Name=fnr;gbkey=Gene;gene=fnr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28815;old_locus_tag=CFSAN001082_04779
NZ_APAH01000078.1	Protein Homology	CDS	8853	9605	.	-	0	ID=cds-WP_023253931.1;Parent=gene-CFSAN001082_RS28815;Dbxref=GenBank:WP_023253931.1;Name=WP_023253931.1;gbkey=CDS;gene=fnr;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007849744.1;locus_tag=CFSAN001082_RS28815;product=fumarate/nitrate reduction transcriptional regulator Fnr;protein_id=WP_023253931.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	9801	10316	.	-	.	ID=gene-CFSAN001082_RS28820;Name=ogt;gbkey=Gene;gene=ogt;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28820;old_locus_tag=CFSAN001082_04784
NZ_APAH01000078.1	Protein Homology	CDS	9801	10316	.	-	0	ID=cds-WP_023203164.1;Parent=gene-CFSAN001082_RS28820;Dbxref=GenBank:WP_023203164.1;Name=WP_023203164.1;Ontology_term=GO:0006281,GO:0003908;gbkey=CDS;gene=ogt;go_function=methylated-DNA-[protein]-cysteine S-methyltransferase activity|0003908||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460618.1;locus_tag=CFSAN001082_RS28820;product=methylated-DNA--[protein]-cysteine S-methyltransferase;protein_id=WP_023203164.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	10574	11137	.	+	.	ID=gene-CFSAN001082_RS28825;Name=smrA;gbkey=Gene;gene=smrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28825;old_locus_tag=CFSAN001082_04789
NZ_APAH01000078.1	Protein Homology	CDS	10574	11137	.	+	0	ID=cds-WP_001046799.1;Parent=gene-CFSAN001082_RS28825;Dbxref=GenBank:WP_001046799.1;Name=WP_001046799.1;gbkey=CDS;gene=smrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460617.1;locus_tag=CFSAN001082_RS28825;product=DNA endonuclease SmrA;protein_id=WP_001046799.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	11548	12702	.	+	.	ID=gene-CFSAN001082_RS28830;Name=CFSAN001082_RS28830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28830;old_locus_tag=CFSAN001082_04794
NZ_APAH01000078.1	Protein Homology	CDS	11548	12702	.	+	0	ID=cds-WP_023253932.1;Parent=gene-CFSAN001082_RS28830;Dbxref=GenBank:WP_023253932.1;Name=WP_023253932.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460616.1;locus_tag=CFSAN001082_RS28830;product=methyl-accepting chemotaxis protein;protein_id=WP_023253932.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	12848	13831	.	+	.	ID=gene-CFSAN001082_RS28835;Name=zntB;gbkey=Gene;gene=zntB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28835;old_locus_tag=CFSAN001082_04799
NZ_APAH01000078.1	Protein Homology	CDS	12848	13831	.	+	0	ID=cds-WP_000387370.1;Parent=gene-CFSAN001082_RS28835;Dbxref=GenBank:WP_000387370.1;Name=WP_000387370.1;Ontology_term=GO:0071577,GO:0005385,GO:0005886;gbkey=CDS;gene=zntB;go_component=plasma membrane|0005886||IEA;go_function=zinc ion transmembrane transporter activity|0005385||IEA;go_process=zinc ion transmembrane transport|0071577||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460615.1;locus_tag=CFSAN001082_RS28835;product=zinc transporter ZntB;protein_id=WP_000387370.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	14108	14290	.	+	.	ID=gene-CFSAN001082_RS49170;Name=CFSAN001082_RS49170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49170
NZ_APAH01000078.1	Protein Homology	CDS	14108	14290	.	+	0	ID=cds-WP_001670836.1;Parent=gene-CFSAN001082_RS49170;Dbxref=GenBank:WP_001670836.1;Name=WP_001670836.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF048180.1;locus_tag=CFSAN001082_RS49170;product=hypothetical protein;protein_id=WP_001670836.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	14319	15692	.	+	.	ID=gene-CFSAN001082_RS28840;Name=dbpA;gbkey=Gene;gene=dbpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28840;old_locus_tag=CFSAN001082_04809
NZ_APAH01000078.1	Protein Homology	CDS	14319	15692	.	+	0	ID=cds-WP_023253933.1;Parent=gene-CFSAN001082_RS28840;Dbxref=GenBank:WP_023253933.1;Name=WP_023253933.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=dbpA;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460614.1;locus_tag=CFSAN001082_RS28840;product=ATP-dependent RNA helicase DbpA;protein_id=WP_023253933.1;transl_table=11
NZ_APAH01000078.1	RefSeq	gene	15736	16671	.	-	.	ID=gene-CFSAN001082_RS28845;Name=ttcA;gbkey=Gene;gene=ttcA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28845;old_locus_tag=CFSAN001082_04814
NZ_APAH01000078.1	Protein Homology	CDS	15736	16671	.	-	0	ID=cds-WP_001156208.1;Parent=gene-CFSAN001082_RS28845;Dbxref=GenBank:WP_001156208.1;Name=WP_001156208.1;Ontology_term=GO:0008033;gbkey=CDS;gene=ttcA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460613.1;locus_tag=CFSAN001082_RS28845;product=tRNA 2-thiocytidine(32) synthetase TtcA;protein_id=WP_001156208.1;transl_table=11
NZ_APAH01000078.1	RefSeq	pseudogene	16723	16929	.	-	.	ID=gene-CFSAN001082_RS46600;Name=CFSAN001082_RS46600;end_range=16929,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46600;old_locus_tag=CFSAN001082_04819;partial=true;pseudo=true
NZ_APAH01000078.1	Protein Homology	CDS	16723	16929	.	-	0	ID=cds-CFSAN001082_RS46600;Parent=gene-CFSAN001082_RS46600;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;end_range=16929,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309956.1;locus_tag=CFSAN001082_RS46600;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000079.1 1 2820
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000079.1	RefSeq	region	1	2820	.	+	.	ID=NZ_APAH01000079.1:1..2820;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000079.1	RefSeq	gene	123	770	.	-	.	ID=gene-CFSAN001082_RS28855;Name=CFSAN001082_RS28855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28855;old_locus_tag=CFSAN001082_04824
NZ_APAH01000079.1	Protein Homology	CDS	123	770	.	-	0	ID=cds-WP_000615840.1;Parent=gene-CFSAN001082_RS28855;Dbxref=GenBank:WP_000615840.1;Name=WP_000615840.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460707.1;locus_tag=CFSAN001082_RS28855;product=YchE family NAAT transporter;protein_id=WP_000615840.1;transl_table=11
NZ_APAH01000079.1	RefSeq	gene	1247	2820	.	+	.	ID=gene-CFSAN001082_RS28860;Name=CFSAN001082_RS28860;end_range=2820,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28860;old_locus_tag=CFSAN001082_04829;partial=true
NZ_APAH01000079.1	Protein Homology	CDS	1247	2820	.	+	0	ID=cds-WP_023253934.1;Parent=gene-CFSAN001082_RS28860;Dbxref=GenBank:WP_023253934.1;Name=WP_023253934.1;Ontology_term=GO:0016491;end_range=2820,.;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460708.1;locus_tag=CFSAN001082_RS28860;partial=true;product=aldehyde dehydrogenase family protein;protein_id=WP_023253934.1;transl_table=11
##sequence-region NZ_APAH01000080.1 1 462
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000080.1	RefSeq	region	1	462	.	+	.	ID=NZ_APAH01000080.1:1..462;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000080.1	RefSeq	gene	84	371	.	-	.	ID=gene-CFSAN001082_RS28865;Name=CFSAN001082_RS28865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28865;old_locus_tag=CFSAN001082_04834
NZ_APAH01000080.1	Protein Homology	CDS	84	371	.	-	0	ID=cds-WP_001675416.1;Parent=gene-CFSAN001082_RS28865;Dbxref=GenBank:WP_001675416.1;Name=WP_001675416.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025953.6;locus_tag=CFSAN001082_RS28865;product=DapH/DapD/GlmU-related protein;protein_id=WP_001675416.1;transl_table=11
NZ_APAH01000080.1	RefSeq	pseudogene	402	462	.	-	.	ID=gene-CFSAN001082_RS48735;Name=CFSAN001082_RS48735;end_range=462,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48735;partial=true;pseudo=true;start_range=.,402
NZ_APAH01000080.1	Protein Homology	CDS	402	462	.	-	1	ID=cds-CFSAN001082_RS48735;Parent=gene-CFSAN001082_RS48735;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=462,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463062.1;locus_tag=CFSAN001082_RS48735;partial=true;product=hypothetical protein;pseudo=true;start_range=.,402;transl_table=11
##sequence-region NZ_APAH01000081.1 1 8186
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000081.1	RefSeq	region	1	8186	.	+	.	ID=NZ_APAH01000081.1:1..8186;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000081.1	RefSeq	pseudogene	1	117	.	+	.	ID=gene-CFSAN001082_RS48160;Name=CFSAN001082_RS48160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48160;old_locus_tag=CFSAN001082_04839;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000081.1	Protein Homology	CDS	1	117	.	+	0	ID=cds-CFSAN001082_RS48160;Parent=gene-CFSAN001082_RS48160;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460460.1;locus_tag=CFSAN001082_RS48160;partial=true;product=DUF1161 domain-containing protein;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000081.1	RefSeq	gene	274	2712	.	+	.	ID=gene-CFSAN001082_RS28875;Name=ynfE;gbkey=Gene;gene=ynfE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28875;old_locus_tag=CFSAN001082_04844
NZ_APAH01000081.1	Protein Homology	CDS	274	2712	.	+	0	ID=cds-WP_023253936.1;Parent=gene-CFSAN001082_RS28875;Dbxref=GenBank:WP_023253936.1;Name=WP_023253936.1;gbkey=CDS;gene=ynfE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006788576.1;locus_tag=CFSAN001082_RS28875;product=selenate/tellurate reductase subunit YnfE;protein_id=WP_023253936.1;transl_table=11
NZ_APAH01000081.1	RefSeq	gene	2811	5246	.	+	.	ID=gene-CFSAN001082_RS28880;Name=ynfF;gbkey=Gene;gene=ynfF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28880;old_locus_tag=CFSAN001082_04849
NZ_APAH01000081.1	Protein Homology	CDS	2811	5246	.	+	0	ID=cds-WP_023253937.1;Parent=gene-CFSAN001082_RS28880;Dbxref=GenBank:WP_023253937.1;Name=WP_023253937.1;gbkey=CDS;gene=ynfF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460458.1;locus_tag=CFSAN001082_RS28880;product=selenate/tellurate reductase subunit YnfF;protein_id=WP_023253937.1;transl_table=11
NZ_APAH01000081.1	RefSeq	gene	5257	5874	.	+	.	ID=gene-CFSAN001082_RS28885;Name=dmsB;gbkey=Gene;gene=dmsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28885;old_locus_tag=CFSAN001082_04854
NZ_APAH01000081.1	Protein Homology	CDS	5257	5874	.	+	0	ID=cds-WP_000213069.1;Parent=gene-CFSAN001082_RS28885;Dbxref=GenBank:WP_000213069.1;Name=WP_000213069.1;gbkey=CDS;gene=dmsB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000213046.1;locus_tag=CFSAN001082_RS28885;product=dimethylsulfoxide reductase iron-sulfur subunit DmsB;protein_id=WP_000213069.1;transl_table=11
NZ_APAH01000081.1	RefSeq	gene	5876	6733	.	+	.	ID=gene-CFSAN001082_RS28890;Name=CFSAN001082_RS28890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28890;old_locus_tag=CFSAN001082_04859
NZ_APAH01000081.1	Protein Homology	CDS	5876	6733	.	+	0	ID=cds-WP_000534693.1;Parent=gene-CFSAN001082_RS28890;Dbxref=GenBank:WP_000534693.1;Name=WP_000534693.1;Ontology_term=GO:0009061,GO:0019645,GO:0009389,GO:0005886,GO:0009390;gbkey=CDS;go_component=plasma membrane|0005886||IEA,dimethyl sulfoxide reductase complex|0009390||IEA;go_function=dimethyl sulfoxide reductase activity|0009389||IEA;go_process=anaerobic respiration|0009061||IEA,anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460456.1;locus_tag=CFSAN001082_RS28890;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_000534693.1;transl_table=11
NZ_APAH01000081.1	RefSeq	gene	6776	7390	.	+	.	ID=gene-CFSAN001082_RS28895;Name=dmsD;gbkey=Gene;gene=dmsD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28895;old_locus_tag=CFSAN001082_04864
NZ_APAH01000081.1	Protein Homology	CDS	6776	7390	.	+	0	ID=cds-WP_023253938.1;Parent=gene-CFSAN001082_RS28895;Dbxref=GenBank:WP_023253938.1;Name=WP_023253938.1;gbkey=CDS;gene=dmsD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460455.1;locus_tag=CFSAN001082_RS28895;product=Tat proofreading chaperone DmsD;protein_id=WP_023253938.1;transl_table=11
NZ_APAH01000081.1	RefSeq	gene	7695	8186	.	+	.	ID=gene-CFSAN001082_RS28900;Name=osmY;end_range=8186,.;gbkey=Gene;gene=osmY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28900;old_locus_tag=CFSAN001082_04869;partial=true
NZ_APAH01000081.1	Protein Homology	CDS	7695	8186	.	+	0	ID=cds-WP_023253939.1;Parent=gene-CFSAN001082_RS28900;Dbxref=GenBank:WP_023253939.1;Name=WP_023253939.1;end_range=8186,.;gbkey=CDS;gene=osmY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460454.1;locus_tag=CFSAN001082_RS28900;partial=true;product=osmoprotectant ABC transporter permease OsmY;protein_id=WP_023253939.1;transl_table=11
##sequence-region NZ_APAH01000082.1 1 225
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000082.1	RefSeq	region	1	225	.	+	.	ID=NZ_APAH01000082.1:1..225;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000082.1	RefSeq	pseudogene	60	225	.	+	.	ID=gene-CFSAN001082_RS49105;Name=CFSAN001082_RS49105;end_range=225,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49105;old_locus_tag=CFSAN001082_04874;partial=true;pseudo=true
NZ_APAH01000082.1	Protein Homology	CDS	60	225	.	+	0	ID=cds-CFSAN001082_RS49105;Parent=gene-CFSAN001082_RS49105;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=225,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000828176.1;locus_tag=CFSAN001082_RS49105;partial=true;product=sugar tyrosine-protein kinase;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000083.1 1 5894
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000083.1	RefSeq	region	1	5894	.	+	.	ID=NZ_APAH01000083.1:1..5894;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000083.1	RefSeq	gene	1	1470	.	+	.	ID=gene-CFSAN001082_RS28905;Name=CFSAN001082_RS28905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28905;old_locus_tag=CFSAN001082_04879;partial=true;start_range=.,1
NZ_APAH01000083.1	Protein Homology	CDS	1	1470	.	+	0	ID=cds-WP_023253941.1;Parent=gene-CFSAN001082_RS28905;Dbxref=GenBank:WP_023253941.1;Name=WP_023253941.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460504.1;locus_tag=CFSAN001082_RS28905;partial=true;product=PhoPQ-activated pathogenicity-related family protein;protein_id=WP_023253941.1;start_range=.,1;transl_table=11
NZ_APAH01000083.1	RefSeq	gene	1647	2933	.	+	.	ID=gene-CFSAN001082_RS28910;Name=CFSAN001082_RS28910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28910;old_locus_tag=CFSAN001082_04884
NZ_APAH01000083.1	Protein Homology	CDS	1647	2933	.	+	0	ID=cds-WP_000824240.1;Parent=gene-CFSAN001082_RS28910;Dbxref=GenBank:WP_000824240.1;Name=WP_000824240.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460503.1;locus_tag=CFSAN001082_RS28910;product=MFS transporter;protein_id=WP_000824240.1;transl_table=11
NZ_APAH01000083.1	RefSeq	gene	2908	3933	.	+	.	ID=gene-CFSAN001082_RS28915;Name=CFSAN001082_RS28915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28915;old_locus_tag=CFSAN001082_04889
NZ_APAH01000083.1	Protein Homology	CDS	2908	3933	.	+	0	ID=cds-WP_017441360.1;Parent=gene-CFSAN001082_RS28915;Dbxref=GenBank:WP_017441360.1;Name=WP_017441360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460502.1;locus_tag=CFSAN001082_RS28915;product=zinc-binding alcohol dehydrogenase family protein;protein_id=WP_017441360.1;transl_table=11
NZ_APAH01000083.1	RefSeq	gene	3992	4783	.	-	.	ID=gene-CFSAN001082_RS28920;Name=CFSAN001082_RS28920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28920;old_locus_tag=CFSAN001082_04894
NZ_APAH01000083.1	Protein Homology	CDS	3992	4783	.	-	0	ID=cds-WP_000388417.1;Parent=gene-CFSAN001082_RS28920;Dbxref=GenBank:WP_000388417.1;Name=WP_000388417.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460501.1;locus_tag=CFSAN001082_RS28920;product=FadR/GntR family transcriptional regulator;protein_id=WP_000388417.1;transl_table=11
NZ_APAH01000083.1	RefSeq	gene	4829	5894	.	-	.	ID=gene-CFSAN001082_RS28925;Name=CFSAN001082_RS28925;end_range=5894,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28925;old_locus_tag=CFSAN001082_04899;partial=true
NZ_APAH01000083.1	Protein Homology	CDS	4829	5894	.	-	1	ID=cds-WP_023253942.1;Parent=gene-CFSAN001082_RS28925;Dbxref=GenBank:WP_023253942.1;Name=WP_023253942.1;end_range=5894,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460500.1;locus_tag=CFSAN001082_RS28925;partial=true;product=choloylglycine hydrolase family protein;protein_id=WP_023253942.1;transl_table=11
##sequence-region NZ_APAH01000084.1 1 14669
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000084.1	RefSeq	region	1	14669	.	+	.	ID=NZ_APAH01000084.1:1..14669;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000084.1	RefSeq	gene	216	383	.	+	.	ID=gene-CFSAN001082_RS0123025;Name=CFSAN001082_RS0123025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123025
NZ_APAH01000084.1	Protein Homology	CDS	216	383	.	+	0	ID=cds-WP_001273663.1;Parent=gene-CFSAN001082_RS0123025;Dbxref=GenBank:WP_001273663.1;Name=WP_001273663.1;Ontology_term=GO:0006950;gbkey=CDS;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460093.1;locus_tag=CFSAN001082_RS0123025;product=general stress protein;protein_id=WP_001273663.1;transl_table=11
NZ_APAH01000084.1	RefSeq	gene	520	1158	.	+	.	ID=gene-CFSAN001082_RS28930;Name=rutR;gbkey=Gene;gene=rutR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28930;old_locus_tag=CFSAN001082_04909
NZ_APAH01000084.1	Protein Homology	CDS	520	1158	.	+	0	ID=cds-WP_000083128.1;Parent=gene-CFSAN001082_RS28930;Dbxref=GenBank:WP_000083128.1;Name=WP_000083128.1;Ontology_term=GO:0045892,GO:0003677;gbkey=CDS;gene=rutR;go_function=DNA binding|0003677||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460094.1;locus_tag=CFSAN001082_RS28930;product=HTH-type transcriptional regulator RutR;protein_id=WP_000083128.1;transl_table=11
NZ_APAH01000084.1	RefSeq	gene	1155	1550	.	-	.	ID=gene-CFSAN001082_RS28935;Name=CFSAN001082_RS28935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28935;old_locus_tag=CFSAN001082_04914
NZ_APAH01000084.1	Protein Homology	CDS	1155	1550	.	-	0	ID=cds-WP_023253944.1;Parent=gene-CFSAN001082_RS28935;Dbxref=GenBank:WP_023253944.1;Name=WP_023253944.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460095.1;locus_tag=CFSAN001082_RS28935;product=lysozyme inhibitor LprI family protein;protein_id=WP_023253944.1;transl_table=11
NZ_APAH01000084.1	RefSeq	gene	1609	5571	.	-	.	ID=gene-CFSAN001082_RS28940;Name=putA;gbkey=Gene;gene=putA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28940;old_locus_tag=CFSAN001082_04919
NZ_APAH01000084.1	Protein Homology	CDS	1609	5571	.	-	0	ID=cds-WP_023253945.1;Parent=gene-CFSAN001082_RS28940;Dbxref=GenBank:WP_023253945.1;Name=WP_023253945.1;Ontology_term=GO:0006355,GO:0006561,GO:0003700,GO:0003842,GO:0004657,GO:0016620;gbkey=CDS;gene=putA;go_function=DNA-binding transcription factor activity|0003700||IEA,1-pyrroline-5-carboxylate dehydrogenase activity|0003842||IEA,proline dehydrogenase activity|0004657||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447555.1;locus_tag=CFSAN001082_RS28940;product=trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase;protein_id=WP_023253945.1;transl_table=11
NZ_APAH01000084.1	RefSeq	gene	5993	7501	.	+	.	ID=gene-CFSAN001082_RS28945;Name=putP;gbkey=Gene;gene=putP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28945;old_locus_tag=CFSAN001082_04924
NZ_APAH01000084.1	Protein Homology	CDS	5993	7501	.	+	0	ID=cds-WP_023253946.1;Parent=gene-CFSAN001082_RS28945;Dbxref=GenBank:WP_023253946.1;Name=WP_023253946.1;Ontology_term=GO:0006814,GO:0015824,GO:0055085,GO:0005298,GO:0031402,GO:0016020;gbkey=CDS;gene=putP;go_component=membrane|0016020||IEA;go_function=proline:sodium symporter activity|0005298||IEA,sodium ion binding|0031402||IEA;go_process=sodium ion transport|0006814||IEA,proline transport|0015824||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460097.1;locus_tag=CFSAN001082_RS28945;product=sodium/proline symporter PutP;protein_id=WP_023253946.1;transl_table=11
NZ_APAH01000084.1	RefSeq	gene	8394	9182	.	+	.	ID=gene-CFSAN001082_RS28955;Name=phoH;gbkey=Gene;gene=phoH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28955;old_locus_tag=CFSAN001082_04934
NZ_APAH01000084.1	Protein Homology	CDS	8394	9182	.	+	0	ID=cds-WP_000533527.1;Parent=gene-CFSAN001082_RS28955;Dbxref=GenBank:WP_000533527.1;Name=WP_000533527.1;gbkey=CDS;gene=phoH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001741490.1;locus_tag=CFSAN001082_RS28955;product=phosphate starvation-inducible protein PhoH;protein_id=WP_000533527.1;transl_table=11
NZ_APAH01000084.1	RefSeq	gene	9288	10169	.	-	.	ID=gene-CFSAN001082_RS28960;Name=CFSAN001082_RS28960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28960;old_locus_tag=CFSAN001082_04939
NZ_APAH01000084.1	Protein Homology	CDS	9288	10169	.	-	0	ID=cds-WP_000433673.1;Parent=gene-CFSAN001082_RS28960;Dbxref=GenBank:WP_000433673.1;Name=WP_000433673.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460099.1;locus_tag=CFSAN001082_RS28960;product=MurR/RpiR family transcriptional regulator;protein_id=WP_000433673.1;transl_table=11
NZ_APAH01000084.1	RefSeq	gene	10455	11951	.	-	.	ID=gene-CFSAN001082_RS28965;Name=CFSAN001082_RS28965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28965;old_locus_tag=CFSAN001082_04944
NZ_APAH01000084.1	Protein Homology	CDS	10455	11951	.	-	0	ID=cds-WP_000628085.1;Parent=gene-CFSAN001082_RS28965;Dbxref=GenBank:WP_000628085.1;Name=WP_000628085.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460100.1;locus_tag=CFSAN001082_RS28965;product=sodium:solute symporter;protein_id=WP_000628085.1;transl_table=11
NZ_APAH01000084.1	RefSeq	gene	12288	12968	.	-	.	ID=gene-CFSAN001082_RS28970;Name=CFSAN001082_RS28970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28970;old_locus_tag=CFSAN001082_04949
NZ_APAH01000084.1	Protein Homology	CDS	12288	12968	.	-	0	ID=cds-WP_000054243.1;Parent=gene-CFSAN001082_RS28970;Dbxref=GenBank:WP_000054243.1;Name=WP_000054243.1;Ontology_term=GO:0005975,GO:0006051,GO:0019262,GO:0047465;gbkey=CDS;go_function=N-acylglucosamine-6-phosphate 2-epimerase activity|0047465||IEA;go_process=carbohydrate metabolic process|0005975||IEA,N-acetylmannosamine metabolic process|0006051||IEA,N-acetylneuraminate catabolic process|0019262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460101.1;locus_tag=CFSAN001082_RS28970;product=N-acetylmannosamine-6-phosphate 2-epimerase;protein_id=WP_000054243.1;transl_table=11
NZ_APAH01000084.1	RefSeq	gene	13474	14628	.	+	.	ID=gene-CFSAN001082_RS28975;Name=CFSAN001082_RS28975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28975;old_locus_tag=CFSAN001082_04954
NZ_APAH01000084.1	Protein Homology	CDS	13474	14628	.	+	0	ID=cds-WP_023253947.1;Parent=gene-CFSAN001082_RS28975;Dbxref=GenBank:WP_023253947.1;Name=WP_023253947.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460102.1;locus_tag=CFSAN001082_RS28975;product=N-acetylneuraminate epimerase;protein_id=WP_023253947.1;transl_table=11
##sequence-region NZ_APAH01000085.1 1 381
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000085.1	RefSeq	region	1	381	.	+	.	ID=NZ_APAH01000085.1:1..381;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000085.1	RefSeq	pseudogene	1	381	.	+	.	ID=gene-CFSAN001082_RS28980;Name=CFSAN001082_RS28980;end_range=381,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS28980;old_locus_tag=CFSAN001082_04959;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000085.1	Protein Homology	CDS	1	381	.	+	2	ID=cds-CFSAN001082_RS28980;Parent=gene-CFSAN001082_RS28980;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=381,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460513.1;locus_tag=CFSAN001082_RS28980;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000086.1 1 2201
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000086.1	RefSeq	region	1	2201	.	+	.	ID=NZ_APAH01000086.1:1..2201;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000086.1	RefSeq	gene	1	492	.	+	.	ID=gene-CFSAN001082_RS28985;Name=CFSAN001082_RS28985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28985;old_locus_tag=CFSAN001082_04964;partial=true;start_range=.,1
NZ_APAH01000086.1	Protein Homology	CDS	1	492	.	+	0	ID=cds-WP_023253949.1;Parent=gene-CFSAN001082_RS28985;Dbxref=GenBank:WP_023253949.1;Name=WP_023253949.1;Ontology_term=GO:0035444,GO:0015099;gbkey=CDS;go_function=nickel cation transmembrane transporter activity|0015099||IEA;go_process=nickel cation transmembrane transport|0035444||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461941.1;locus_tag=CFSAN001082_RS28985;partial=true;product=nickel/cobalt efflux transporter;protein_id=WP_023253949.1;start_range=.,1;transl_table=11
NZ_APAH01000086.1	RefSeq	gene	707	1465	.	-	.	ID=gene-CFSAN001082_RS28990;Name=CFSAN001082_RS28990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28990;old_locus_tag=CFSAN001082_04969
NZ_APAH01000086.1	Protein Homology	CDS	707	1465	.	-	0	ID=cds-WP_023253950.1;Parent=gene-CFSAN001082_RS28990;Dbxref=GenBank:WP_023253950.1;Name=WP_023253950.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461942.1;locus_tag=CFSAN001082_RS28990;product=hypothetical protein;protein_id=WP_023253950.1;transl_table=11
NZ_APAH01000086.1	RefSeq	gene	1452	1964	.	-	.	ID=gene-CFSAN001082_RS28995;Name=CFSAN001082_RS28995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS28995;old_locus_tag=CFSAN001082_04974
NZ_APAH01000086.1	Protein Homology	CDS	1452	1964	.	-	0	ID=cds-WP_000336260.1;Parent=gene-CFSAN001082_RS28995;Dbxref=GenBank:WP_000336260.1;Name=WP_000336260.1;Ontology_term=GO:0006351;gbkey=CDS;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001727965.1;locus_tag=CFSAN001082_RS28995;product=CaiF/GrlA family transcriptional regulator;protein_id=WP_000336260.1;transl_table=11
NZ_APAH01000086.1	RefSeq	gene	2108	2201	.	-	.	ID=gene-CFSAN001082_RS48740;Name=CFSAN001082_RS48740;end_range=2201,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48740;partial=true
NZ_APAH01000086.1	Protein Homology	CDS	2108	2201	.	-	1	ID=cds-WP_237747773.1;Parent=gene-CFSAN001082_RS48740;Dbxref=GenBank:WP_237747773.1;Name=WP_237747773.1;end_range=2201,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461943.1;locus_tag=CFSAN001082_RS48740;partial=true;product=hypothetical protein;protein_id=WP_237747773.1;transl_table=11
##sequence-region NZ_APAH01000087.1 1 225
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000087.1	RefSeq	region	1	225	.	+	.	ID=NZ_APAH01000087.1:1..225;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000087.1	RefSeq	gene	1	76	.	-	.	ID=gene-CFSAN001082_RS29000;Name=CFSAN001082_RS29000;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS29000;old_locus_tag=CFSAN001082_t04981
NZ_APAH01000087.1	tRNAscan-SE	tRNA	1	76	.	-	.	ID=rna-CFSAN001082_RS29000;Parent=gene-CFSAN001082_RS29000;anticodon=(pos:complement(40..42));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS29000;product=tRNA-Glu
NZ_APAH01000087.1	tRNAscan-SE	exon	1	76	.	-	.	ID=exon-CFSAN001082_RS29000-1;Parent=rna-CFSAN001082_RS29000;anticodon=(pos:complement(40..42));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS29000;product=tRNA-Glu
##sequence-region NZ_APAH01000088.1 1 287
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000088.1	RefSeq	region	1	287	.	+	.	ID=NZ_APAH01000088.1:1..287;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000088.1	RefSeq	pseudogene	94	287	.	-	.	ID=gene-CFSAN001082_RS29005;Name=CFSAN001082_RS29005;end_range=287,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS29005;old_locus_tag=CFSAN001082_04981;partial=true;pseudo=true
NZ_APAH01000088.1	Protein Homology	CDS	94	287	.	-	2	ID=cds-CFSAN001082_RS29005;Parent=gene-CFSAN001082_RS29005;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=287,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462615.1;locus_tag=CFSAN001082_RS29005;partial=true;product=3-deoxy-D-manno-oct-2-ulosonate III transferase WaaZ;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000089.1 1 276
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000089.1	RefSeq	region	1	276	.	+	.	ID=NZ_APAH01000089.1:1..276;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000089.1	RefSeq	pseudogene	1	276	.	+	.	ID=gene-CFSAN001082_RS29010;Name=rtsA;end_range=276,.;gbkey=Gene;gene=rtsA;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS29010;old_locus_tag=CFSAN001082_04986;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000089.1	Protein Homology	CDS	1	276	.	+	2	ID=cds-CFSAN001082_RS29010;Parent=gene-CFSAN001082_RS29010;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=276,.;gbkey=CDS;gene=rtsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463180.1;locus_tag=CFSAN001082_RS29010;partial=true;product=transcriptional regulator RtsA;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000090.1 1 19979
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000090.1	RefSeq	region	1	19979	.	+	.	ID=NZ_APAH01000090.1:1..19979;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000090.1	RefSeq	gene	15	932	.	-	.	ID=gene-CFSAN001082_RS29015;Name=CFSAN001082_RS29015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29015;old_locus_tag=CFSAN001082_04991
NZ_APAH01000090.1	Protein Homology	CDS	15	932	.	-	0	ID=cds-WP_023195039.1;Parent=gene-CFSAN001082_RS29015;Dbxref=GenBank:WP_023195039.1;Name=WP_023195039.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000703615.1;locus_tag=CFSAN001082_RS29015;product=glycosyltransferase family 2 protein;protein_id=WP_023195039.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	929	1291	.	-	.	ID=gene-CFSAN001082_RS29020;Name=CFSAN001082_RS29020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29020;old_locus_tag=CFSAN001082_04996
NZ_APAH01000090.1	Protein Homology	CDS	929	1291	.	-	0	ID=cds-WP_023253953.1;Parent=gene-CFSAN001082_RS29020;Dbxref=GenBank:WP_023253953.1;Name=WP_023253953.1;Ontology_term=GO:0000271,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459552.1;locus_tag=CFSAN001082_RS29020;product=GtrA family protein;protein_id=WP_023253953.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	1716	1925	.	-	.	ID=gene-CFSAN001082_RS29025;Name=CFSAN001082_RS29025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29025;old_locus_tag=CFSAN001082_05001
NZ_APAH01000090.1	GeneMarkS-2+	CDS	1716	1925	.	-	0	ID=cds-WP_109161284.1;Parent=gene-CFSAN001082_RS29025;Dbxref=GenBank:WP_109161284.1;Name=WP_109161284.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS29025;product=copper-binding protein;protein_id=WP_109161284.1;transl_table=11
NZ_APAH01000090.1	RefSeq	pseudogene	2161	2535	.	-	.	ID=gene-CFSAN001082_RS29030;Name=CFSAN001082_RS29030;end_range=2535,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS29030;old_locus_tag=CFSAN001082_05006;partial=true;pseudo=true
NZ_APAH01000090.1	Protein Homology	CDS	2161	2535	.	-	0	ID=cds-CFSAN001082_RS29030;Parent=gene-CFSAN001082_RS29030;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2535,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000635961.1;locus_tag=CFSAN001082_RS29030;partial=true;product=ATP-binding protein;pseudo=true;transl_table=11
NZ_APAH01000090.1	RefSeq	pseudogene	2539	2778	.	+	.	ID=gene-CFSAN001082_RS29035;Name=CFSAN001082_RS29035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS29035;old_locus_tag=CFSAN001082_05011;partial=true;pseudo=true;start_range=.,2539
NZ_APAH01000090.1	Protein Homology	CDS	2539	2778	.	+	0	ID=cds-CFSAN001082_RS29035;Parent=gene-CFSAN001082_RS29035;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000574020.1;locus_tag=CFSAN001082_RS29035;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2539;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	2830	3684	.	-	.	ID=gene-CFSAN001082_RS29040;Name=rclR;gbkey=Gene;gene=rclR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29040;old_locus_tag=CFSAN001082_05016
NZ_APAH01000090.1	Protein Homology	CDS	2830	3684	.	-	0	ID=cds-WP_023253957.1;Parent=gene-CFSAN001082_RS29040;Dbxref=GenBank:WP_023253957.1;Name=WP_023253957.1;gbkey=CDS;gene=rclR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459555.1;locus_tag=CFSAN001082_RS29040;product=reactive chlorine-specific transcriptional regulator RclR;protein_id=WP_023253957.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	3900	5225	.	+	.	ID=gene-CFSAN001082_RS29045;Name=rclA;gbkey=Gene;gene=rclA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29045;old_locus_tag=CFSAN001082_05021
NZ_APAH01000090.1	Protein Homology	CDS	3900	5225	.	+	0	ID=cds-WP_000195929.1;Parent=gene-CFSAN001082_RS29045;Dbxref=GenBank:WP_000195929.1;Name=WP_000195929.1;gbkey=CDS;gene=rclA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459556.1;locus_tag=CFSAN001082_RS29045;product=reactive chlorine resistance oxidoreductase RclA;protein_id=WP_000195929.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	5382	5618	.	+	.	ID=gene-CFSAN001082_RS29050;Name=rclB;gbkey=Gene;gene=rclB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29050;old_locus_tag=CFSAN001082_05026
NZ_APAH01000090.1	Protein Homology	CDS	5382	5618	.	+	0	ID=cds-WP_023253958.1;Parent=gene-CFSAN001082_RS29050;Dbxref=GenBank:WP_023253958.1;Name=WP_023253958.1;gbkey=CDS;gene=rclB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459557.1;locus_tag=CFSAN001082_RS29050;product=reactive chlorine resistance periplasmic protein RclB;protein_id=WP_023253958.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	5631	6191	.	+	.	ID=gene-CFSAN001082_RS29055;Name=rclC;gbkey=Gene;gene=rclC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29055;old_locus_tag=CFSAN001082_05031
NZ_APAH01000090.1	Protein Homology	CDS	5631	6191	.	+	0	ID=cds-WP_000362177.1;Parent=gene-CFSAN001082_RS29055;Dbxref=GenBank:WP_000362177.1;Name=WP_000362177.1;gbkey=CDS;gene=rclC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459558.1;locus_tag=CFSAN001082_RS29055;product=reactive chlorine resistance membrane protein RclC;protein_id=WP_000362177.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	6270	7445	.	-	.	ID=gene-CFSAN001082_RS29060;Name=CFSAN001082_RS29060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29060;old_locus_tag=CFSAN001082_05036
NZ_APAH01000090.1	Protein Homology	CDS	6270	7445	.	-	0	ID=cds-WP_023253959.1;Parent=gene-CFSAN001082_RS29060;Dbxref=GenBank:WP_023253959.1;Name=WP_023253959.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459559.1;locus_tag=CFSAN001082_RS29060;product=DnaJ family molecular chaperone;protein_id=WP_023253959.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	7771	9165	.	+	.	ID=gene-CFSAN001082_RS29065;Name=pheP;gbkey=Gene;gene=pheP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29065;old_locus_tag=CFSAN001082_05041
NZ_APAH01000090.1	Protein Homology	CDS	7771	9165	.	+	0	ID=cds-WP_000786291.1;Parent=gene-CFSAN001082_RS29065;Dbxref=GenBank:WP_000786291.1;Name=WP_000786291.1;Ontology_term=GO:0006865;gbkey=CDS;gene=pheP;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459560.1;locus_tag=CFSAN001082_RS29065;product=phenylalanine transporter;protein_id=WP_000786291.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	9207	10454	.	-	.	ID=gene-CFSAN001082_RS29070;Name=CFSAN001082_RS29070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29070;old_locus_tag=CFSAN001082_05046
NZ_APAH01000090.1	Protein Homology	CDS	9207	10454	.	-	0	ID=cds-WP_001156971.1;Parent=gene-CFSAN001082_RS29070;Dbxref=GenBank:WP_001156971.1;Name=WP_001156971.1;Ontology_term=GO:0055085,GO:0008381,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=mechanosensitive monoatomic ion channel activity|0008381||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459561.1;locus_tag=CFSAN001082_RS29070;product=mechanosensitive ion channel family protein;protein_id=WP_001156971.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	10765	12735	.	+	.	ID=gene-CFSAN001082_RS29075;Name=CFSAN001082_RS29075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29075;old_locus_tag=CFSAN001082_05051
NZ_APAH01000090.1	Protein Homology	CDS	10765	12735	.	+	0	ID=cds-WP_023253960.1;Parent=gene-CFSAN001082_RS29075;Dbxref=GenBank:WP_023253960.1;Name=WP_023253960.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459562.1;locus_tag=CFSAN001082_RS29075;product=autotransporter domain-containing esterase;protein_id=WP_023253960.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	13002	13655	.	-	.	ID=gene-CFSAN001082_RS29080;Name=nfsB;gbkey=Gene;gene=nfsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29080;old_locus_tag=CFSAN001082_05056
NZ_APAH01000090.1	Protein Homology	CDS	13002	13655	.	-	0	ID=cds-WP_023253961.1;Parent=gene-CFSAN001082_RS29080;Dbxref=GenBank:WP_023253961.1;Name=WP_023253961.1;Ontology_term=GO:0016491;gbkey=CDS;gene=nfsB;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459570.1;locus_tag=CFSAN001082_RS29080;product=oxygen-insensitive NAD(P)H nitroreductase;protein_id=WP_023253961.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	13752	14120	.	-	.	ID=gene-CFSAN001082_RS29085;Name=CFSAN001082_RS29085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29085;old_locus_tag=CFSAN001082_05061
NZ_APAH01000090.1	Protein Homology	CDS	13752	14120	.	-	0	ID=cds-WP_000348989.1;Parent=gene-CFSAN001082_RS29085;Dbxref=GenBank:WP_000348989.1;Name=WP_000348989.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459571.1;locus_tag=CFSAN001082_RS29085;product=MmcQ/YjbR family DNA-binding protein;protein_id=WP_000348989.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	14120	14701	.	-	.	ID=gene-CFSAN001082_RS29090;Name=CFSAN001082_RS29090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29090;old_locus_tag=CFSAN001082_05066
NZ_APAH01000090.1	Protein Homology	CDS	14120	14701	.	-	0	ID=cds-WP_000113609.1;Parent=gene-CFSAN001082_RS29090;Dbxref=GenBank:WP_000113609.1;Name=WP_000113609.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459572.1;locus_tag=CFSAN001082_RS29090;product=TetR/AcrR family transcriptional regulator;protein_id=WP_000113609.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	14990	15331	.	+	.	ID=gene-CFSAN001082_RS29095;Name=CFSAN001082_RS29095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29095;old_locus_tag=CFSAN001082_05071
NZ_APAH01000090.1	Protein Homology	CDS	14990	15331	.	+	0	ID=cds-WP_000155633.1;Parent=gene-CFSAN001082_RS29095;Dbxref=GenBank:WP_000155633.1;Name=WP_000155633.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459573.1;locus_tag=CFSAN001082_RS29095;product=RamA family antibiotic efflux transcriptional regulator;protein_id=WP_000155633.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	15337	15585	.	-	.	ID=gene-CFSAN001082_RS29100;Name=CFSAN001082_RS29100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29100;old_locus_tag=CFSAN001082_05076
NZ_APAH01000090.1	Protein Homology	CDS	15337	15585	.	-	0	ID=cds-WP_000682497.1;Parent=gene-CFSAN001082_RS29100;Dbxref=GenBank:WP_000682497.1;Name=WP_000682497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459574.1;locus_tag=CFSAN001082_RS29100;product=DUF1158 family protein;protein_id=WP_000682497.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	15652	16770	.	-	.	ID=gene-CFSAN001082_RS29105;Name=CFSAN001082_RS29105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29105;old_locus_tag=CFSAN001082_05081
NZ_APAH01000090.1	Protein Homology	CDS	15652	16770	.	-	0	ID=cds-WP_023253962.1;Parent=gene-CFSAN001082_RS29105;Dbxref=GenBank:WP_023253962.1;Name=WP_023253962.1;Ontology_term=GO:0042398,GO:0004357;gbkey=CDS;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=modified amino acid biosynthetic process|0042398||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459575.1;locus_tag=CFSAN001082_RS29105;product=YbdK family carboxylate-amine ligase;protein_id=WP_023253962.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	16782	17486	.	-	.	ID=gene-CFSAN001082_RS29110;Name=entD;gbkey=Gene;gene=entD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29110;old_locus_tag=CFSAN001082_05086
NZ_APAH01000090.1	Protein Homology	CDS	16782	17486	.	-	0	ID=cds-WP_023253963.1;Parent=gene-CFSAN001082_RS29110;Dbxref=GenBank:WP_023253963.1;Name=WP_023253963.1;Ontology_term=GO:0009239,GO:0000287,GO:0008897,GO:0009366;gbkey=CDS;gene=entD;go_component=enterobactin synthetase complex|0009366||IEA;go_function=magnesium ion binding|0000287||IEA,holo-[acyl-carrier-protein] synthase activity|0008897||IEA;go_process=enterobactin biosynthetic process|0009239||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459576.1;locus_tag=CFSAN001082_RS29110;product=enterobactin synthase subunit EntD;protein_id=WP_023253963.1;transl_table=11
NZ_APAH01000090.1	RefSeq	gene	17532	19787	.	-	.	ID=gene-CFSAN001082_RS29115;Name=CFSAN001082_RS29115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29115;old_locus_tag=CFSAN001082_05091
NZ_APAH01000090.1	Protein Homology	CDS	17532	19787	.	-	0	ID=cds-WP_023253964.1;Parent=gene-CFSAN001082_RS29115;Dbxref=GenBank:WP_023253964.1;Name=WP_023253964.1;Ontology_term=GO:0015891,GO:0015343,GO:0038023,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=siderophore-iron transmembrane transporter activity|0015343||IEA,signaling receptor activity|0038023||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459577.1;locus_tag=CFSAN001082_RS29115;product=TonB-dependent siderophore receptor;protein_id=WP_023253964.1;transl_table=11
##sequence-region NZ_APAH01000091.1 1 287
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000091.1	RefSeq	region	1	287	.	+	.	ID=NZ_APAH01000091.1:1..287;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000092.1 1 6371
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000092.1	RefSeq	region	1	6371	.	+	.	ID=NZ_APAH01000092.1:1..6371;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000092.1	RefSeq	gene	17	775	.	-	.	ID=gene-CFSAN001082_RS29125;Name=stbE;gbkey=Gene;gene=stbE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29125;old_locus_tag=CFSAN001082_05101
NZ_APAH01000092.1	Protein Homology	CDS	17	775	.	-	0	ID=cds-WP_023253965.1;Parent=gene-CFSAN001082_RS29125;Dbxref=GenBank:WP_023253965.1;Name=WP_023253965.1;gbkey=CDS;gene=stbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459331.1;locus_tag=CFSAN001082_RS29125;product=fimbrial biogenesis chaperone StbE;protein_id=WP_023253965.1;transl_table=11
NZ_APAH01000092.1	RefSeq	gene	741	2066	.	-	.	ID=gene-CFSAN001082_RS29130;Name=stbD;gbkey=Gene;gene=stbD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29130;old_locus_tag=CFSAN001082_05106
NZ_APAH01000092.1	Protein Homology	CDS	741	2066	.	-	0	ID=cds-WP_000899098.1;Parent=gene-CFSAN001082_RS29130;Dbxref=GenBank:WP_000899098.1;Name=WP_000899098.1;gbkey=CDS;gene=stbD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459332.1;locus_tag=CFSAN001082_RS29130;product=fimbrial usher protein StbD;protein_id=WP_000899098.1;transl_table=11
NZ_APAH01000092.1	RefSeq	gene	2071	4632	.	-	.	ID=gene-CFSAN001082_RS29135;Name=CFSAN001082_RS29135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29135;old_locus_tag=CFSAN001082_05111
NZ_APAH01000092.1	Protein Homology	CDS	2071	4632	.	-	0	ID=cds-WP_023253966.1;Parent=gene-CFSAN001082_RS29135;Dbxref=GenBank:WP_023253966.1;Name=WP_023253966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459333.1;locus_tag=CFSAN001082_RS29135;product=fimbrial outer membrane usher protein;protein_id=WP_023253966.1;transl_table=11
NZ_APAH01000092.1	RefSeq	gene	4616	5377	.	-	.	ID=gene-CFSAN001082_RS29140;Name=stbB;gbkey=Gene;gene=stbB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29140;old_locus_tag=CFSAN001082_05116
NZ_APAH01000092.1	Protein Homology	CDS	4616	5377	.	-	0	ID=cds-WP_000781486.1;Parent=gene-CFSAN001082_RS29140;Dbxref=GenBank:WP_000781486.1;Name=WP_000781486.1;gbkey=CDS;gene=stbB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459334.1;locus_tag=CFSAN001082_RS29140;product=fimbrial biogenesis chaperone StbB;protein_id=WP_000781486.1;transl_table=11
NZ_APAH01000092.1	RefSeq	gene	5439	5975	.	-	.	ID=gene-CFSAN001082_RS29145;Name=CFSAN001082_RS29145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29145;old_locus_tag=CFSAN001082_05121
NZ_APAH01000092.1	Protein Homology	CDS	5439	5975	.	-	0	ID=cds-WP_000062033.1;Parent=gene-CFSAN001082_RS29145;Dbxref=GenBank:WP_000062033.1;Name=WP_000062033.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459335.1;locus_tag=CFSAN001082_RS29145;product=fimbrial protein;protein_id=WP_000062033.1;transl_table=11
##sequence-region NZ_APAH01000093.1 1 336
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000093.1	RefSeq	region	1	336	.	+	.	ID=NZ_APAH01000093.1:1..336;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000093.1	RefSeq	gene	1	336	.	-	.	ID=gene-CFSAN001082_RS29150;Name=CFSAN001082_RS29150;end_range=336,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29150;old_locus_tag=CFSAN001082_05126;partial=true;start_range=.,1
NZ_APAH01000093.1	Protein Homology	CDS	1	336	.	-	0	ID=cds-WP_023253967.1;Parent=gene-CFSAN001082_RS29150;Dbxref=GenBank:WP_023253967.1;Name=WP_023253967.1;end_range=336,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459744.1;locus_tag=CFSAN001082_RS29150;partial=true;product=LysR substrate-binding domain-containing protein;protein_id=WP_023253967.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000094.1 1 12882
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000094.1	RefSeq	region	1	12882	.	+	.	ID=NZ_APAH01000094.1:1..12882;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000094.1	RefSeq	gene	84	5819	.	+	.	ID=gene-CFSAN001082_RS29155;Name=shdA;gbkey=Gene;gene=shdA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29155;old_locus_tag=CFSAN001082_05131
NZ_APAH01000094.1	Protein Homology	CDS	84	5819	.	+	0	ID=cds-WP_024150253.1;Parent=gene-CFSAN001082_RS29155;Dbxref=GenBank:WP_024150253.1;Name=WP_024150253.1;Ontology_term=GO:0019867;gbkey=CDS;gene=shdA;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835061.1;locus_tag=CFSAN001082_RS29155;product=fibronectin-binding autotransporter adhesin ShdA;protein_id=WP_024150253.1;transl_table=11
NZ_APAH01000094.1	RefSeq	gene	5981	7330	.	-	.	ID=gene-CFSAN001082_RS29160;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29160;old_locus_tag=CFSAN001082_05136
NZ_APAH01000094.1	Protein Homology	CDS	5981	7330	.	-	0	ID=cds-WP_023253969.1;Parent=gene-CFSAN001082_RS29160;Dbxref=GenBank:WP_023253969.1;Name=WP_023253969.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;gene=xseA;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461447.1;locus_tag=CFSAN001082_RS29160;product=exodeoxyribonuclease VII large subunit;protein_id=WP_023253969.1;transl_table=11
NZ_APAH01000094.1	RefSeq	gene	7491	8957	.	+	.	ID=gene-CFSAN001082_RS29165;Name=guaB;gbkey=Gene;gene=guaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29165;old_locus_tag=CFSAN001082_05141
NZ_APAH01000094.1	Protein Homology	CDS	7491	8957	.	+	0	ID=cds-WP_000944174.1;Parent=gene-CFSAN001082_RS29165;Dbxref=GenBank:WP_000944174.1;Name=WP_000944174.1;Ontology_term=GO:0006164,GO:0003938;gbkey=CDS;gene=guaB;go_function=IMP dehydrogenase activity|0003938||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004151980.1;locus_tag=CFSAN001082_RS29165;product=IMP dehydrogenase;protein_id=WP_000944174.1;transl_table=11
NZ_APAH01000094.1	RefSeq	gene	9027	10604	.	+	.	ID=gene-CFSAN001082_RS29170;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29170;old_locus_tag=CFSAN001082_05146
NZ_APAH01000094.1	Protein Homology	CDS	9027	10604	.	+	0	ID=cds-WP_000138296.1;Parent=gene-CFSAN001082_RS29170;Dbxref=GenBank:WP_000138296.1;Name=WP_000138296.1;Ontology_term=GO:0006177,GO:0003922,GO:0005524,GO:0016462;gbkey=CDS;gene=guaA;go_function=GMP synthase (glutamine-hydrolyzing) activity|0003922||IEA,ATP binding|0005524||IEA,pyrophosphatase activity|0016462||IEA;go_process=GMP biosynthetic process|0006177||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130181.1;locus_tag=CFSAN001082_RS29170;product=glutamine-hydrolyzing GMP synthase;protein_id=WP_000138296.1;transl_table=11
NZ_APAH01000094.1	RefSeq	pseudogene	10740	11057	.	+	.	ID=gene-CFSAN001082_RS29175;Name=CFSAN001082_RS29175;end_range=11057,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS29175;old_locus_tag=CFSAN001082_05151;partial=true;pseudo=true;start_range=.,10740
NZ_APAH01000094.1	Protein Homology	CDS	10740	11057	.	+	0	ID=cds-CFSAN001082_RS29175;Parent=gene-CFSAN001082_RS29175;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0015074;end_range=11057,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612015.1;locus_tag=CFSAN001082_RS29175;partial=true;product=DDE-type integrase/transposase/recombinase;pseudo=true;start_range=.,10740;transl_table=11
NZ_APAH01000094.1	RefSeq	gene	11136	11465	.	-	.	ID=gene-CFSAN001082_RS29180;Name=CFSAN001082_RS29180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29180;old_locus_tag=CFSAN001082_05156
NZ_APAH01000094.1	Protein Homology	CDS	11136	11465	.	-	0	ID=cds-WP_077905271.1;Parent=gene-CFSAN001082_RS29180;Dbxref=GenBank:WP_077905271.1;Name=WP_077905271.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461443.1;locus_tag=CFSAN001082_RS29180;product=DUF1493 family protein;protein_id=WP_077905271.1;transl_table=11
NZ_APAH01000094.1	RefSeq	gene	11450	11911	.	-	.	ID=gene-CFSAN001082_RS49175;Name=CFSAN001082_RS49175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49175;old_locus_tag=CFSAN001082_05161
NZ_APAH01000094.1	Protein Homology	CDS	11450	11911	.	-	0	ID=cds-WP_023253971.1;Parent=gene-CFSAN001082_RS49175;Dbxref=GenBank:WP_023253971.1;Name=WP_023253971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_154057295.1;locus_tag=CFSAN001082_RS49175;product=STM2901 family protein;protein_id=WP_023253971.1;transl_table=11
NZ_APAH01000094.1	RefSeq	pseudogene	12034	12387	.	-	.	ID=gene-CFSAN001082_RS0123030;Name=CFSAN001082_RS0123030;end_range=12387,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0123030;old_locus_tag=CFSAN001082_05166;partial=true;pseudo=true;start_range=.,12034
NZ_APAH01000094.1	Protein Homology	CDS	12034	12387	.	-	0	ID=cds-CFSAN001082_RS0123030;Parent=gene-CFSAN001082_RS0123030;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=12387,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012477168.1;locus_tag=CFSAN001082_RS0123030;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,12034;transl_table=11
NZ_APAH01000094.1	RefSeq	pseudogene	12486	12578	.	-	.	ID=gene-CFSAN001082_RS46630;Name=CFSAN001082_RS46630;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46630;partial=true;pseudo=true;start_range=.,12486
NZ_APAH01000094.1	Protein Homology	CDS	12486	12578	.	-	0	ID=cds-CFSAN001082_RS46630;Parent=gene-CFSAN001082_RS46630;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340155.1;locus_tag=CFSAN001082_RS46630;partial=true;product=integrase;pseudo=true;start_range=.,12486;transl_table=11
##sequence-region NZ_APAH01000095.1 1 258
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000095.1	RefSeq	region	1	258	.	+	.	ID=NZ_APAH01000095.1:1..258;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000095.1	RefSeq	gene	1	258	.	-	.	ID=gene-CFSAN001082_RS48750;Name=CFSAN001082_RS48750;end_range=258,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48750;partial=true;start_range=.,1
NZ_APAH01000095.1	Protein Homology	CDS	1	258	.	-	2	ID=cds-WP_237747774.1;Parent=gene-CFSAN001082_RS48750;Dbxref=GenBank:WP_237747774.1;Name=WP_237747774.1;end_range=258,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001159683.1;locus_tag=CFSAN001082_RS48750;partial=true;product=hypothetical protein;protein_id=WP_237747774.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000096.1 1 311
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000096.1	RefSeq	region	1	311	.	+	.	ID=NZ_APAH01000096.1:1..311;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000096.1	RefSeq	gene	139	311	.	-	.	ID=gene-CFSAN001082_RS29190;Name=CFSAN001082_RS29190;end_range=311,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29190;old_locus_tag=CFSAN001082_05171;partial=true
NZ_APAH01000096.1	Protein Homology	CDS	139	311	.	-	2	ID=cds-WP_023253972.1;Parent=gene-CFSAN001082_RS29190;Dbxref=GenBank:WP_023253972.1;Name=WP_023253972.1;end_range=311,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460133.1;locus_tag=CFSAN001082_RS29190;partial=true;product=DinI-like family protein;protein_id=WP_023253972.1;transl_table=11
##sequence-region NZ_APAH01000097.1 1 7899
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000097.1	RefSeq	region	1	7899	.	+	.	ID=NZ_APAH01000097.1:1..7899;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000097.1	RefSeq	gene	119	208	.	+	.	ID=gene-CFSAN001082_RS29195;Name=kdpF;gbkey=Gene;gene=kdpF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29195;old_locus_tag=CFSAN001082_05176
NZ_APAH01000097.1	Protein Homology	CDS	119	208	.	+	0	ID=cds-WP_001670793.1;Parent=gene-CFSAN001082_RS29195;Dbxref=GenBank:WP_001670793.1;Name=WP_001670793.1;gbkey=CDS;gene=kdpF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459692.1;locus_tag=CFSAN001082_RS29195;product=K(+)-transporting ATPase subunit F;protein_id=WP_001670793.1;transl_table=11
NZ_APAH01000097.1	RefSeq	gene	208	1887	.	+	.	ID=gene-CFSAN001082_RS29200;Name=kdpA;gbkey=Gene;gene=kdpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29200;old_locus_tag=CFSAN001082_05181
NZ_APAH01000097.1	Protein Homology	CDS	208	1887	.	+	0	ID=cds-WP_023194911.1;Parent=gene-CFSAN001082_RS29200;Dbxref=GenBank:WP_023194911.1;Name=WP_023194911.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpA;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459691.1;locus_tag=CFSAN001082_RS29200;product=potassium-transporting ATPase subunit KdpA;protein_id=WP_023194911.1;transl_table=11
NZ_APAH01000097.1	RefSeq	gene	1908	3956	.	+	.	ID=gene-CFSAN001082_RS29205;Name=kdpB;gbkey=Gene;gene=kdpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29205;old_locus_tag=CFSAN001082_05186
NZ_APAH01000097.1	Protein Homology	CDS	1908	3956	.	+	0	ID=cds-WP_000088034.1;Parent=gene-CFSAN001082_RS29205;Dbxref=GenBank:WP_000088034.1;Name=WP_000088034.1;Ontology_term=GO:0006813,GO:0005524,GO:0008556,GO:0016020,GO:0031004;gbkey=CDS;gene=kdpB;go_component=membrane|0016020||IEA,potassium ion-transporting ATPase complex|0031004||IEA;go_function=ATP binding|0005524||IEA,P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459690.1;locus_tag=CFSAN001082_RS29205;product=potassium-transporting ATPase subunit KdpB;protein_id=WP_000088034.1;transl_table=11
NZ_APAH01000097.1	RefSeq	gene	3965	4549	.	+	.	ID=gene-CFSAN001082_RS29210;Name=kdpC;gbkey=Gene;gene=kdpC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29210;old_locus_tag=CFSAN001082_05191
NZ_APAH01000097.1	Protein Homology	CDS	3965	4549	.	+	0	ID=cds-WP_001539480.1;Parent=gene-CFSAN001082_RS29210;Dbxref=GenBank:WP_001539480.1;Name=WP_001539480.1;Ontology_term=GO:0006813,GO:0008556,GO:0016020;gbkey=CDS;gene=kdpC;go_component=membrane|0016020||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459689.1;locus_tag=CFSAN001082_RS29210;product=potassium-transporting ATPase subunit KdpC;protein_id=WP_001539480.1;transl_table=11
NZ_APAH01000097.1	RefSeq	gene	4546	7230	.	+	.	ID=gene-CFSAN001082_RS29215;Name=kdpD;gbkey=Gene;gene=kdpD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29215;old_locus_tag=CFSAN001082_05196
NZ_APAH01000097.1	Protein Homology	CDS	4546	7230	.	+	0	ID=cds-WP_000997487.1;Parent=gene-CFSAN001082_RS29215;Dbxref=GenBank:WP_000997487.1;Name=WP_000997487.1;Ontology_term=GO:0000160,GO:0000155;gbkey=CDS;gene=kdpD;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459688.1;locus_tag=CFSAN001082_RS29215;product=two-component system sensor histidine kinase KdpD;protein_id=WP_000997487.1;transl_table=11
NZ_APAH01000097.1	RefSeq	gene	7227	7899	.	+	.	ID=gene-CFSAN001082_RS29220;Name=kdpE;end_range=7899,.;gbkey=Gene;gene=kdpE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29220;old_locus_tag=CFSAN001082_05201;partial=true
NZ_APAH01000097.1	Protein Homology	CDS	7227	7899	.	+	0	ID=cds-WP_023253973.1;Parent=gene-CFSAN001082_RS29220;Dbxref=GenBank:WP_023253973.1;Name=WP_023253973.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;end_range=7899,.;gbkey=CDS;gene=kdpE;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459687.1;locus_tag=CFSAN001082_RS29220;partial=true;product=two-component system response regulator KdpE;protein_id=WP_023253973.1;transl_table=11
##sequence-region NZ_APAH01000098.1 1 9790
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000098.1	RefSeq	region	1	9790	.	+	.	ID=NZ_APAH01000098.1:1..9790;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000098.1	RefSeq	gene	126	1181	.	+	.	ID=gene-CFSAN001082_RS29225;Name=CFSAN001082_RS29225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29225;old_locus_tag=CFSAN001082_05206
NZ_APAH01000098.1	Protein Homology	CDS	126	1181	.	+	0	ID=cds-WP_000475254.1;Parent=gene-CFSAN001082_RS29225;Dbxref=GenBank:WP_000475254.1;Name=WP_000475254.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0008270,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA,zinc ion binding|0008270||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462053.1;locus_tag=CFSAN001082_RS29225;product=methyl-accepting chemotaxis protein;protein_id=WP_000475254.1;transl_table=11
NZ_APAH01000098.1	RefSeq	gene	1481	2893	.	-	.	ID=gene-CFSAN001082_RS29230;Name=uxaC;gbkey=Gene;gene=uxaC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29230;old_locus_tag=CFSAN001082_05211
NZ_APAH01000098.1	Protein Homology	CDS	1481	2893	.	-	0	ID=cds-WP_023253974.1;Parent=gene-CFSAN001082_RS29230;Dbxref=GenBank:WP_023253974.1;Name=WP_023253974.1;Ontology_term=GO:0006064,GO:0008880;gbkey=CDS;gene=uxaC;go_function=glucuronate isomerase activity|0008880||IEA;go_process=glucuronate catabolic process|0006064||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462052.1;locus_tag=CFSAN001082_RS29230;product=glucuronate isomerase;protein_id=WP_023253974.1;transl_table=11
NZ_APAH01000098.1	RefSeq	gene	2905	4377	.	-	.	ID=gene-CFSAN001082_RS29235;Name=CFSAN001082_RS29235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29235;old_locus_tag=CFSAN001082_05216
NZ_APAH01000098.1	Protein Homology	CDS	2905	4377	.	-	0	ID=cds-WP_000437132.1;Parent=gene-CFSAN001082_RS29235;Dbxref=GenBank:WP_000437132.1;Name=WP_000437132.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462051.1;locus_tag=CFSAN001082_RS29235;product=fructuronate reductase;protein_id=WP_000437132.1;transl_table=11
NZ_APAH01000098.1	RefSeq	gene	4488	5672	.	-	.	ID=gene-CFSAN001082_RS29240;Name=uxuA;gbkey=Gene;gene=uxuA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29240;old_locus_tag=CFSAN001082_05221
NZ_APAH01000098.1	Protein Homology	CDS	4488	5672	.	-	0	ID=cds-WP_000815487.1;Parent=gene-CFSAN001082_RS29240;Dbxref=GenBank:WP_000815487.1;Name=WP_000815487.1;Ontology_term=GO:0006064,GO:0008927;gbkey=CDS;gene=uxuA;go_function=mannonate dehydratase activity|0008927||IEA;go_process=glucuronate catabolic process|0006064||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462050.1;locus_tag=CFSAN001082_RS29240;product=mannonate dehydratase;protein_id=WP_000815487.1;transl_table=11
NZ_APAH01000098.1	RefSeq	gene	6077	7381	.	+	.	ID=gene-CFSAN001082_RS29245;Name=CFSAN001082_RS29245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29245;old_locus_tag=CFSAN001082_05226
NZ_APAH01000098.1	Protein Homology	CDS	6077	7381	.	+	0	ID=cds-WP_000784371.1;Parent=gene-CFSAN001082_RS29245;Dbxref=GenBank:WP_000784371.1;Name=WP_000784371.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462049.1;locus_tag=CFSAN001082_RS29245;product=MFS transporter;protein_id=WP_000784371.1;transl_table=11
NZ_APAH01000098.1	RefSeq	gene	7777	8655	.	+	.	ID=gene-CFSAN001082_RS29250;Name=CFSAN001082_RS29250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29250;old_locus_tag=CFSAN001082_05231
NZ_APAH01000098.1	Protein Homology	CDS	7777	8655	.	+	0	ID=cds-WP_023253975.1;Parent=gene-CFSAN001082_RS29250;Dbxref=GenBank:WP_023253975.1;Name=WP_023253975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462048.1;locus_tag=CFSAN001082_RS29250;product=carbon-nitrogen hydrolase family protein;protein_id=WP_023253975.1;transl_table=11
NZ_APAH01000098.1	RefSeq	gene	8694	9617	.	+	.	ID=gene-CFSAN001082_RS29255;Name=CFSAN001082_RS29255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29255;old_locus_tag=CFSAN001082_05236
NZ_APAH01000098.1	Protein Homology	CDS	8694	9617	.	+	0	ID=cds-WP_000540892.1;Parent=gene-CFSAN001082_RS29255;Dbxref=GenBank:WP_000540892.1;Name=WP_000540892.1;Ontology_term=GO:0005975,GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462047.1;locus_tag=CFSAN001082_RS29255;product=polysaccharide deacetylase family protein;protein_id=WP_000540892.1;transl_table=11
##sequence-region NZ_APAH01000099.1 1 1782
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000099.1	RefSeq	region	1	1782	.	+	.	ID=NZ_APAH01000099.1:1..1782;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000099.1	RefSeq	gene	400	1275	.	-	.	ID=gene-CFSAN001082_RS29260;Name=CFSAN001082_RS29260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29260;old_locus_tag=CFSAN001082_05241
NZ_APAH01000099.1	Protein Homology	CDS	400	1275	.	-	0	ID=cds-WP_023253976.1;Parent=gene-CFSAN001082_RS29260;Dbxref=GenBank:WP_023253976.1;Name=WP_023253976.1;Ontology_term=GO:0009307,GO:0015666;gbkey=CDS;go_function=restriction endodeoxyribonuclease activity|0015666||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465694.1;locus_tag=CFSAN001082_RS29260;product=phosphorothioated DNA-binding restriction endonuclease;protein_id=WP_023253976.1;transl_table=11
NZ_APAH01000099.1	RefSeq	gene	1353	1547	.	-	.	ID=gene-CFSAN001082_RS29265;Name=CFSAN001082_RS29265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29265;old_locus_tag=CFSAN001082_05246
NZ_APAH01000099.1	Protein Homology	CDS	1353	1547	.	-	0	ID=cds-WP_000422448.1;Parent=gene-CFSAN001082_RS29265;Dbxref=GenBank:WP_000422448.1;Name=WP_000422448.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000422446.1;locus_tag=CFSAN001082_RS29265;product=hypothetical protein;protein_id=WP_000422448.1;transl_table=11
##sequence-region NZ_APAH01000100.1 1 44958
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000100.1	RefSeq	region	1	44958	.	+	.	ID=NZ_APAH01000100.1:1..44958;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000100.1	RefSeq	gene	143	1357	.	+	.	ID=gene-CFSAN001082_RS29270;Name=alaA;gbkey=Gene;gene=alaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29270;old_locus_tag=CFSAN001082_05251
NZ_APAH01000100.1	Protein Homology	CDS	143	1357	.	+	0	ID=cds-WP_000074540.1;Parent=gene-CFSAN001082_RS29270;Dbxref=GenBank:WP_000074540.1;Name=WP_000074540.1;gbkey=CDS;gene=alaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461273.1;locus_tag=CFSAN001082_RS29270;product=alanine transaminase AlaA;protein_id=WP_000074540.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	1451	2050	.	+	.	ID=gene-CFSAN001082_RS29275;Name=yfbR;gbkey=Gene;gene=yfbR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29275;old_locus_tag=CFSAN001082_05256
NZ_APAH01000100.1	Protein Homology	CDS	1451	2050	.	+	0	ID=cds-WP_000813882.1;Parent=gene-CFSAN001082_RS29275;Dbxref=GenBank:WP_000813882.1;Name=WP_000813882.1;Ontology_term=GO:0002953;gbkey=CDS;gene=yfbR;go_function=5'-deoxynucleotidase activity|0002953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461274.1;locus_tag=CFSAN001082_RS29275;product=5'-deoxynucleotidase;protein_id=WP_000813882.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	2141	3967	.	-	.	ID=gene-CFSAN001082_RS29280;Name=CFSAN001082_RS29280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29280;old_locus_tag=CFSAN001082_05261
NZ_APAH01000100.1	Protein Homology	CDS	2141	3967	.	-	0	ID=cds-WP_001012857.1;Parent=gene-CFSAN001082_RS29280;Dbxref=GenBank:WP_001012857.1;Name=WP_001012857.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461275.1;locus_tag=CFSAN001082_RS29280;product=SLC13 family permease;protein_id=WP_001012857.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	4044	4721	.	-	.	ID=gene-CFSAN001082_RS29285;Name=CFSAN001082_RS29285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29285;old_locus_tag=CFSAN001082_05266
NZ_APAH01000100.1	Protein Homology	CDS	4044	4721	.	-	0	ID=cds-WP_001555201.1;Parent=gene-CFSAN001082_RS29285;Dbxref=GenBank:WP_001555201.1;Name=WP_001555201.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461276.3;locus_tag=CFSAN001082_RS29285;product=sugar phosphatase;protein_id=WP_001555201.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	4714	5208	.	-	.	ID=gene-CFSAN001082_RS29290;Name=CFSAN001082_RS29290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29290;old_locus_tag=CFSAN001082_05271
NZ_APAH01000100.1	Protein Homology	CDS	4714	5208	.	-	0	ID=cds-WP_000426135.1;Parent=gene-CFSAN001082_RS29290;Dbxref=GenBank:WP_000426135.1;Name=WP_000426135.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007371080.1;locus_tag=CFSAN001082_RS29290;product=YfbU family protein;protein_id=WP_000426135.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	5291	5746	.	-	.	ID=gene-CFSAN001082_RS29295;Name=yfbV;gbkey=Gene;gene=yfbV;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29295;old_locus_tag=CFSAN001082_05276
NZ_APAH01000100.1	Protein Homology	CDS	5291	5746	.	-	0	ID=cds-WP_000106617.1;Parent=gene-CFSAN001082_RS29295;Dbxref=GenBank:WP_000106617.1;Name=WP_000106617.1;gbkey=CDS;gene=yfbV;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129545.1;locus_tag=CFSAN001082_RS29295;product=terminus macrodomain insulation protein YfbV;protein_id=WP_000106617.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	6086	7288	.	+	.	ID=gene-CFSAN001082_RS29300;Name=ackA;gbkey=Gene;gene=ackA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29300;old_locus_tag=CFSAN001082_05281
NZ_APAH01000100.1	Protein Homology	CDS	6086	7288	.	+	0	ID=cds-WP_000095689.1;Parent=gene-CFSAN001082_RS29300;Dbxref=GenBank:WP_000095689.1;Name=WP_000095689.1;gbkey=CDS;gene=ackA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129491.1;locus_tag=CFSAN001082_RS29300;product=acetate kinase;protein_id=WP_000095689.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	7365	9509	.	+	.	ID=gene-CFSAN001082_RS29305;Name=pta;gbkey=Gene;gene=pta;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29305;old_locus_tag=CFSAN001082_05286
NZ_APAH01000100.1	Protein Homology	CDS	7365	9509	.	+	0	ID=cds-WP_000086692.1;Parent=gene-CFSAN001082_RS29305;Dbxref=GenBank:WP_000086692.1;Name=WP_000086692.1;Ontology_term=GO:0016407;gbkey=CDS;gene=pta;go_function=acetyltransferase activity|0016407||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461280.1;locus_tag=CFSAN001082_RS29305;product=phosphate acetyltransferase;protein_id=WP_000086692.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	9727	11247	.	+	.	ID=gene-CFSAN001082_RS29310;Name=yfcC;gbkey=Gene;gene=yfcC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29310;old_locus_tag=CFSAN001082_05291
NZ_APAH01000100.1	Protein Homology	CDS	9727	11247	.	+	0	ID=cds-WP_000117932.1;Parent=gene-CFSAN001082_RS29310;Dbxref=GenBank:WP_000117932.1;Name=WP_000117932.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yfcC;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461281.1;locus_tag=CFSAN001082_RS29310;product=putative basic amino acid antiporter YfcC;protein_id=WP_000117932.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	11296	12249	.	-	.	ID=gene-CFSAN001082_RS29315;Name=CFSAN001082_RS29315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29315;old_locus_tag=CFSAN001082_05296
NZ_APAH01000100.1	Protein Homology	CDS	11296	12249	.	-	0	ID=cds-WP_000593035.1;Parent=gene-CFSAN001082_RS29315;Dbxref=GenBank:WP_000593035.1;Name=WP_000593035.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461282.1;locus_tag=CFSAN001082_RS29315;product=transketolase family protein;protein_id=WP_000593035.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	12242	13072	.	-	.	ID=gene-CFSAN001082_RS29320;Name=CFSAN001082_RS29320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29320;old_locus_tag=CFSAN001082_05301
NZ_APAH01000100.1	Protein Homology	CDS	12242	13072	.	-	0	ID=cds-WP_001103256.1;Parent=gene-CFSAN001082_RS29320;Dbxref=GenBank:WP_001103256.1;Name=WP_001103256.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461283.1;locus_tag=CFSAN001082_RS29320;product=transketolase;protein_id=WP_001103256.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	13069	14460	.	-	.	ID=gene-CFSAN001082_RS29325;Name=CFSAN001082_RS29325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29325;old_locus_tag=CFSAN001082_05306
NZ_APAH01000100.1	Protein Homology	CDS	13069	14460	.	-	0	ID=cds-WP_001518515.1;Parent=gene-CFSAN001082_RS29325;Dbxref=GenBank:WP_001518515.1;Name=WP_001518515.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461284.3;locus_tag=CFSAN001082_RS29325;product=PTS ascorbate transporter subunit IIC;protein_id=WP_001518515.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	14481	14753	.	-	.	ID=gene-CFSAN001082_RS29330;Name=CFSAN001082_RS29330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29330;old_locus_tag=CFSAN001082_05311
NZ_APAH01000100.1	Protein Homology	CDS	14481	14753	.	-	0	ID=cds-WP_000699818.1;Parent=gene-CFSAN001082_RS29330;Dbxref=GenBank:WP_000699818.1;Name=WP_000699818.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461285.1;locus_tag=CFSAN001082_RS29330;product=PTS sugar transporter subunit IIB;protein_id=WP_000699818.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	14834	15277	.	-	.	ID=gene-CFSAN001082_RS29335;Name=CFSAN001082_RS29335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29335;old_locus_tag=CFSAN001082_05316
NZ_APAH01000100.1	Protein Homology	CDS	14834	15277	.	-	0	ID=cds-WP_000901810.1;Parent=gene-CFSAN001082_RS29335;Dbxref=GenBank:WP_000901810.1;Name=WP_000901810.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461286.1;locus_tag=CFSAN001082_RS29335;product=PTS sugar transporter subunit IIA;protein_id=WP_000901810.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	15530	16549	.	+	.	ID=gene-CFSAN001082_RS29340;Name=CFSAN001082_RS29340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29340;old_locus_tag=CFSAN001082_05321
NZ_APAH01000100.1	Protein Homology	CDS	15530	16549	.	+	0	ID=cds-WP_000026949.1;Parent=gene-CFSAN001082_RS29340;Dbxref=GenBank:WP_000026949.1;Name=WP_000026949.1;Ontology_term=GO:0006351,GO:0006355,GO:0045892,GO:0000976,GO:0003677,GO:0003700,GO:0043565;gbkey=CDS;go_function=transcription cis-regulatory region binding|0000976||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461287.1;locus_tag=CFSAN001082_RS29340;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_000026949.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	16555	17109	.	-	.	ID=gene-CFSAN001082_RS29345;Name=yfcD;gbkey=Gene;gene=yfcD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29345;old_locus_tag=CFSAN001082_05326
NZ_APAH01000100.1	Protein Homology	CDS	16555	17109	.	-	0	ID=cds-WP_000230215.1;Parent=gene-CFSAN001082_RS29345;Dbxref=GenBank:WP_000230215.1;Name=WP_000230215.1;Ontology_term=GO:0016817;gbkey=CDS;gene=yfcD;go_function=hydrolase activity%2C acting on acid anhydrides|0016817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461288.1;locus_tag=CFSAN001082_RS29345;product=NUDIX hydrolase YfcD;protein_id=WP_000230215.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	17166	17717	.	-	.	ID=gene-CFSAN001082_RS29350;Name=yfcE;gbkey=Gene;gene=yfcE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29350;old_locus_tag=CFSAN001082_05331
NZ_APAH01000100.1	Protein Homology	CDS	17166	17717	.	-	0	ID=cds-WP_023253977.1;Parent=gene-CFSAN001082_RS29350;Dbxref=GenBank:WP_023253977.1;Name=WP_023253977.1;gbkey=CDS;gene=yfcE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461289.1;locus_tag=CFSAN001082_RS29350;product=phosphodiesterase;protein_id=WP_023253977.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	17773	18417	.	-	.	ID=gene-CFSAN001082_RS29355;Name=yfcF;gbkey=Gene;gene=yfcF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29355;old_locus_tag=CFSAN001082_05336
NZ_APAH01000100.1	Protein Homology	CDS	17773	18417	.	-	0	ID=cds-WP_023253978.1;Parent=gene-CFSAN001082_RS29355;Dbxref=GenBank:WP_023253978.1;Name=WP_023253978.1;Ontology_term=GO:0006749;gbkey=CDS;gene=yfcF;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461290.1;locus_tag=CFSAN001082_RS29355;product=glutathione transferase;protein_id=WP_023253978.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	18560	19207	.	+	.	ID=gene-CFSAN001082_RS29360;Name=yfcG;gbkey=Gene;gene=yfcG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29360;old_locus_tag=CFSAN001082_05341
NZ_APAH01000100.1	Protein Homology	CDS	18560	19207	.	+	0	ID=cds-WP_000566563.1;Parent=gene-CFSAN001082_RS29360;Dbxref=GenBank:WP_000566563.1;Name=WP_000566563.1;gbkey=CDS;gene=yfcG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461291.1;locus_tag=CFSAN001082_RS29360;product=GSH-dependent disulfide bond oxidoreductase;protein_id=WP_000566563.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	19333	20226	.	+	.	ID=gene-CFSAN001082_RS29365;Name=CFSAN001082_RS29365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29365;old_locus_tag=CFSAN001082_05346
NZ_APAH01000100.1	Protein Homology	CDS	19333	20226	.	+	0	ID=cds-WP_001166274.1;Parent=gene-CFSAN001082_RS29365;Dbxref=GenBank:WP_001166274.1;Name=WP_001166274.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461292.1;locus_tag=CFSAN001082_RS29365;product=TIGR01777 family oxidoreductase;protein_id=WP_001166274.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	20278	21051	.	-	.	ID=gene-CFSAN001082_RS29370;Name=hisP;gbkey=Gene;gene=hisP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29370;old_locus_tag=CFSAN001082_05351
NZ_APAH01000100.1	Protein Homology	CDS	20278	21051	.	-	0	ID=cds-WP_001293591.1;Parent=gene-CFSAN001082_RS29370;Dbxref=GenBank:WP_001293591.1;Name=WP_001293591.1;gbkey=CDS;gene=hisP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311217.1;locus_tag=CFSAN001082_RS29370;product=histidine ABC transporter ATP-binding protein HisP;protein_id=WP_001293591.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	21065	21772	.	-	.	ID=gene-CFSAN001082_RS29375;Name=hisM;gbkey=Gene;gene=hisM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29375;old_locus_tag=CFSAN001082_05356
NZ_APAH01000100.1	Protein Homology	CDS	21065	21772	.	-	0	ID=cds-WP_023253979.1;Parent=gene-CFSAN001082_RS29375;Dbxref=GenBank:WP_023253979.1;Name=WP_023253979.1;gbkey=CDS;gene=hisM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461294.1;locus_tag=CFSAN001082_RS29375;product=histidine ABC transporter permease HisM;protein_id=WP_023253979.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	21769	22455	.	-	.	ID=gene-CFSAN001082_RS29380;Name=CFSAN001082_RS29380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29380;old_locus_tag=CFSAN001082_05361
NZ_APAH01000100.1	Protein Homology	CDS	21769	22455	.	-	0	ID=cds-WP_000965498.1;Parent=gene-CFSAN001082_RS29380;Dbxref=GenBank:WP_000965498.1;Name=WP_000965498.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012124147.1;locus_tag=CFSAN001082_RS29380;product=histidine ABC transporter permease HisQ;protein_id=WP_000965498.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	22636	23418	.	-	.	ID=gene-CFSAN001082_RS29385;Name=hisJ;gbkey=Gene;gene=hisJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29385;old_locus_tag=CFSAN001082_05366
NZ_APAH01000100.1	Protein Homology	CDS	22636	23418	.	-	0	ID=cds-WP_000731868.1;Parent=gene-CFSAN001082_RS29385;Dbxref=GenBank:WP_000731868.1;Name=WP_000731868.1;gbkey=CDS;gene=hisJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461296.1;locus_tag=CFSAN001082_RS29385;product=histidine ABC transporter substrate-binding protein HisJ;protein_id=WP_000731868.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	23656	24438	.	-	.	ID=gene-CFSAN001082_RS29390;Name=argT;gbkey=Gene;gene=argT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29390;old_locus_tag=CFSAN001082_05371
NZ_APAH01000100.1	Protein Homology	CDS	23656	24438	.	-	0	ID=cds-WP_000754418.1;Parent=gene-CFSAN001082_RS29390;Dbxref=GenBank:WP_000754418.1;Name=WP_000754418.1;gbkey=CDS;gene=argT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461297.1;locus_tag=CFSAN001082_RS29390;product=lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT;protein_id=WP_000754418.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	24727	25296	.	-	.	ID=gene-CFSAN001082_RS29395;Name=CFSAN001082_RS29395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29395;old_locus_tag=CFSAN001082_05381
NZ_APAH01000100.1	Protein Homology	CDS	24727	25296	.	-	0	ID=cds-WP_000825680.1;Parent=gene-CFSAN001082_RS29395;Dbxref=GenBank:WP_000825680.1;Name=WP_000825680.1;Ontology_term=GO:0010181,GO:0016831,GO:0106141;gbkey=CDS;go_function=FMN binding|0010181||IEA,carboxy-lyase activity|0016831||IEA,flavin prenyltransferase activity|0106141||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461298.1;locus_tag=CFSAN001082_RS29395;product=UbiX family flavin prenyltransferase;protein_id=WP_000825680.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	25323	26729	.	-	.	ID=gene-CFSAN001082_RS29400;Name=CFSAN001082_RS29400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29400;old_locus_tag=CFSAN001082_05386
NZ_APAH01000100.1	Protein Homology	CDS	25323	26729	.	-	0	ID=cds-WP_000380353.1;Parent=gene-CFSAN001082_RS29400;Dbxref=GenBank:WP_000380353.1;Name=WP_000380353.1;Ontology_term=GO:0003333,GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transmembrane transport|0003333||IEA,amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461299.1;locus_tag=CFSAN001082_RS29400;product=amino acid permease;protein_id=WP_000380353.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	26793	27896	.	-	.	ID=gene-CFSAN001082_RS29405;Name=CFSAN001082_RS29405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29405;old_locus_tag=CFSAN001082_05391
NZ_APAH01000100.1	Protein Homology	CDS	26793	27896	.	-	0	ID=cds-WP_000281907.1;Parent=gene-CFSAN001082_RS29405;Dbxref=GenBank:WP_000281907.1;Name=WP_000281907.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461300.1;locus_tag=CFSAN001082_RS29405;product=alanine/ornithine racemase family PLP-dependent enzyme;protein_id=WP_000281907.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	27898	29319	.	-	.	ID=gene-CFSAN001082_RS29410;Name=CFSAN001082_RS29410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29410;old_locus_tag=CFSAN001082_05396
NZ_APAH01000100.1	Protein Homology	CDS	27898	29319	.	-	0	ID=cds-WP_000072512.1;Parent=gene-CFSAN001082_RS29410;Dbxref=GenBank:WP_000072512.1;Name=WP_000072512.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461301.1;locus_tag=CFSAN001082_RS29410;product=APC family permease;protein_id=WP_000072512.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	29410	30807	.	-	.	ID=gene-CFSAN001082_RS29415;Name=CFSAN001082_RS29415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29415;old_locus_tag=CFSAN001082_05401
NZ_APAH01000100.1	Protein Homology	CDS	29410	30807	.	-	0	ID=cds-WP_000132306.1;Parent=gene-CFSAN001082_RS29415;Dbxref=GenBank:WP_000132306.1;Name=WP_000132306.1;Ontology_term=GO:0016831,GO:0030170;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461302.1;locus_tag=CFSAN001082_RS29415;product=diaminopimelate decarboxylase family protein;protein_id=WP_000132306.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	31018	32445	.	+	.	ID=gene-CFSAN001082_RS29420;Name=CFSAN001082_RS29420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29420;old_locus_tag=CFSAN001082_05406
NZ_APAH01000100.1	Protein Homology	CDS	31018	32445	.	+	0	ID=cds-WP_000168923.1;Parent=gene-CFSAN001082_RS29420;Dbxref=GenBank:WP_000168923.1;Name=WP_000168923.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461303.1;locus_tag=CFSAN001082_RS29420;product=sigma-54 interaction domain-containing protein;protein_id=WP_000168923.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	32481	33998	.	-	.	ID=gene-CFSAN001082_RS29425;Name=purF;gbkey=Gene;gene=purF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29425;old_locus_tag=CFSAN001082_05411
NZ_APAH01000100.1	Protein Homology	CDS	32481	33998	.	-	0	ID=cds-WP_000334205.1;Parent=gene-CFSAN001082_RS29425;Dbxref=GenBank:WP_000334205.1;Name=WP_000334205.1;Ontology_term=GO:0009113,GO:0004044;gbkey=CDS;gene=purF;go_function=amidophosphoribosyltransferase activity|0004044||IEA;go_process=purine nucleobase biosynthetic process|0009113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006820991.1;locus_tag=CFSAN001082_RS29425;product=amidophosphoribosyltransferase;protein_id=WP_000334205.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	34036	34524	.	-	.	ID=gene-CFSAN001082_RS29430;Name=cvpA;gbkey=Gene;gene=cvpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29430;old_locus_tag=CFSAN001082_05416
NZ_APAH01000100.1	Protein Homology	CDS	34036	34524	.	-	0	ID=cds-WP_000262102.1;Parent=gene-CFSAN001082_RS29430;Dbxref=GenBank:WP_000262102.1;Name=WP_000262102.1;gbkey=CDS;gene=cvpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461305.1;locus_tag=CFSAN001082_RS29430;product=colicin V production protein;protein_id=WP_000262102.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	34835	35509	.	-	.	ID=gene-CFSAN001082_RS29435;Name=dedD;gbkey=Gene;gene=dedD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29435;old_locus_tag=CFSAN001082_05426
NZ_APAH01000100.1	Protein Homology	CDS	34835	35509	.	-	0	ID=cds-WP_023253980.1;Parent=gene-CFSAN001082_RS29435;Dbxref=GenBank:WP_023253980.1;Name=WP_023253980.1;Ontology_term=GO:0032506,GO:0042834,GO:0030428;gbkey=CDS;gene=dedD;go_component=cell septum|0030428||IEA;go_function=peptidoglycan binding|0042834||IEA;go_process=cytokinetic process|0032506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461306.1;locus_tag=CFSAN001082_RS29435;product=cell division protein DedD;protein_id=WP_023253980.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	35499	36767	.	-	.	ID=gene-CFSAN001082_RS29440;Name=folC;gbkey=Gene;gene=folC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29440;old_locus_tag=CFSAN001082_05431
NZ_APAH01000100.1	Protein Homology	CDS	35499	36767	.	-	0	ID=cds-WP_000792277.1;Parent=gene-CFSAN001082_RS29440;Dbxref=GenBank:WP_000792277.1;Name=WP_000792277.1;Ontology_term=GO:0009396,GO:0004326,GO:0005524,GO:0016874;gbkey=CDS;gene=folC;go_function=tetrahydrofolylpolyglutamate synthase activity|0004326||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461307.1;locus_tag=CFSAN001082_RS29440;product=bifunctional tetrahydrofolate synthase/dihydrofolate synthase;protein_id=WP_000792277.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	36835	37749	.	-	.	ID=gene-CFSAN001082_RS29445;Name=accD;gbkey=Gene;gene=accD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29445;old_locus_tag=CFSAN001082_05436
NZ_APAH01000100.1	Protein Homology	CDS	36835	37749	.	-	0	ID=cds-WP_000118383.1;Parent=gene-CFSAN001082_RS29445;Dbxref=GenBank:WP_000118383.1;Name=WP_000118383.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accD;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461308.1;locus_tag=CFSAN001082_RS29445;product=acetyl-CoA carboxylase%2C carboxyltransferase subunit beta;protein_id=WP_000118383.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	37899	38558	.	-	.	ID=gene-CFSAN001082_RS29450;Name=CFSAN001082_RS29450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29450;old_locus_tag=CFSAN001082_05441
NZ_APAH01000100.1	Protein Homology	CDS	37899	38558	.	-	0	ID=cds-WP_000364318.1;Parent=gene-CFSAN001082_RS29450;Dbxref=GenBank:WP_000364318.1;Name=WP_000364318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461309.1;locus_tag=CFSAN001082_RS29450;product=DedA family protein;protein_id=WP_000364318.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	38607	39419	.	-	.	ID=gene-CFSAN001082_RS29455;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29455;old_locus_tag=CFSAN001082_05446
NZ_APAH01000100.1	Protein Homology	CDS	38607	39419	.	-	0	ID=cds-WP_000016631.1;Parent=gene-CFSAN001082_RS29455;Dbxref=GenBank:WP_000016631.1;Name=WP_000016631.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truA;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461310.1;locus_tag=CFSAN001082_RS29455;product=tRNA pseudouridine(38-40) synthase TruA;protein_id=WP_000016631.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	39419	40432	.	-	.	ID=gene-CFSAN001082_RS29460;Name=CFSAN001082_RS29460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29460;old_locus_tag=CFSAN001082_05451
NZ_APAH01000100.1	Protein Homology	CDS	39419	40432	.	-	0	ID=cds-WP_001289141.1;Parent=gene-CFSAN001082_RS29460;Dbxref=GenBank:WP_001289141.1;Name=WP_001289141.1;Ontology_term=GO:0008652,GO:0016620,GO:0046983,GO:0051287;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,protein dimerization activity|0046983||IEA,NAD binding|0051287||IEA;go_process=amino acid biosynthetic process|0008652||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461311.1;locus_tag=CFSAN001082_RS29460;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_001289141.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	40500	41636	.	-	.	ID=gene-CFSAN001082_RS29465;Name=pdxB;gbkey=Gene;gene=pdxB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29465;old_locus_tag=CFSAN001082_05456
NZ_APAH01000100.1	Protein Homology	CDS	40500	41636	.	-	0	ID=cds-WP_023253981.1;Parent=gene-CFSAN001082_RS29465;Dbxref=GenBank:WP_023253981.1;Name=WP_023253981.1;Ontology_term=GO:0008615,GO:0033711,GO:0046983,GO:0051287;gbkey=CDS;gene=pdxB;go_function=4-phosphoerythronate dehydrogenase activity|0033711||IEA,protein dimerization activity|0046983||IEA,NAD binding|0051287||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461312.1;locus_tag=CFSAN001082_RS29465;product=4-phosphoerythronate dehydrogenase PdxB;protein_id=WP_023253981.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	41740	42741	.	+	.	ID=gene-CFSAN001082_RS29470;Name=flk;gbkey=Gene;gene=flk;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29470;old_locus_tag=CFSAN001082_05461
NZ_APAH01000100.1	Protein Homology	CDS	41740	42741	.	+	0	ID=cds-WP_023253982.1;Parent=gene-CFSAN001082_RS29470;Dbxref=GenBank:WP_023253982.1;Name=WP_023253982.1;Ontology_term=GO:0010468,GO:0016020;gbkey=CDS;gene=flk;go_component=membrane|0016020||IEA;go_process=regulation of gene expression|0010468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461313.1;locus_tag=CFSAN001082_RS29470;product=flagella biosynthesis regulator Flk;protein_id=WP_023253982.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	42738	43916	.	-	.	ID=gene-CFSAN001082_RS29475;Name=CFSAN001082_RS29475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29475;old_locus_tag=CFSAN001082_05466
NZ_APAH01000100.1	Protein Homology	CDS	42738	43916	.	-	0	ID=cds-WP_023253983.1;Parent=gene-CFSAN001082_RS29475;Dbxref=GenBank:WP_023253983.1;Name=WP_023253983.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461314.1;locus_tag=CFSAN001082_RS29475;product=MFS transporter;protein_id=WP_023253983.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	44096	44470	.	-	.	ID=gene-CFSAN001082_RS29480;Name=CFSAN001082_RS29480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29480;old_locus_tag=CFSAN001082_05471
NZ_APAH01000100.1	Protein Homology	CDS	44096	44470	.	-	0	ID=cds-WP_001051266.1;Parent=gene-CFSAN001082_RS29480;Dbxref=GenBank:WP_001051266.1;Name=WP_001051266.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461315.1;locus_tag=CFSAN001082_RS29480;product=hypothetical protein;protein_id=WP_001051266.1;transl_table=11
NZ_APAH01000100.1	RefSeq	gene	44643	44891	.	+	.	ID=gene-CFSAN001082_RS29485;Name=CFSAN001082_RS29485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29485;old_locus_tag=CFSAN001082_05476
NZ_APAH01000100.1	Protein Homology	CDS	44643	44891	.	+	0	ID=cds-WP_000433427.1;Parent=gene-CFSAN001082_RS29485;Dbxref=GenBank:WP_000433427.1;Name=WP_000433427.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461316.1;locus_tag=CFSAN001082_RS29485;product=helix-turn-helix domain-containing protein;protein_id=WP_000433427.1;transl_table=11
##sequence-region NZ_APAH01000101.1 1 249
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000101.1	RefSeq	region	1	249	.	+	.	ID=NZ_APAH01000101.1:1..249;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000101.1	RefSeq	pseudogene	1	249	.	+	.	ID=gene-CFSAN001082_RS29490;Name=CFSAN001082_RS29490;end_range=249,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS29490;old_locus_tag=CFSAN001082_05481;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000101.1	Protein Homology	CDS	1	249	.	+	2	ID=cds-CFSAN001082_RS29490;Parent=gene-CFSAN001082_RS29490;Note=phosphorylates the response regulator SsrB%3B is involved in the expression of the virulence genes of Salmonella pathogenicity island-2%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=249,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460357.1;locus_tag=CFSAN001082_RS29490;partial=true;product=two component system sensor kinase;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000102.1 1 3921
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000102.1	RefSeq	region	1	3921	.	+	.	ID=NZ_APAH01000102.1:1..3921;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000102.1	RefSeq	gene	126	1598	.	+	.	ID=gene-CFSAN001082_RS29495;Name=CFSAN001082_RS29495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29495;old_locus_tag=CFSAN001082_05486
NZ_APAH01000102.1	Protein Homology	CDS	126	1598	.	+	0	ID=cds-WP_023253985.1;Parent=gene-CFSAN001082_RS29495;Dbxref=GenBank:WP_023253985.1;Name=WP_023253985.1;Ontology_term=GO:0016616;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461999.1;locus_tag=CFSAN001082_RS29495;product=mannitol dehydrogenase family protein;protein_id=WP_023253985.1;transl_table=11
NZ_APAH01000102.1	RefSeq	gene	1601	2617	.	+	.	ID=gene-CFSAN001082_RS29500;Name=CFSAN001082_RS29500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29500;old_locus_tag=CFSAN001082_05491
NZ_APAH01000102.1	Protein Homology	CDS	1601	2617	.	+	0	ID=cds-WP_000853913.1;Parent=gene-CFSAN001082_RS29500;Dbxref=GenBank:WP_000853913.1;Name=WP_000853913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461998.1;locus_tag=CFSAN001082_RS29500;product=zinc-binding alcohol dehydrogenase family protein;protein_id=WP_000853913.1;transl_table=11
NZ_APAH01000102.1	RefSeq	gene	2631	3638	.	+	.	ID=gene-CFSAN001082_RS29505;Name=CFSAN001082_RS29505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29505;old_locus_tag=CFSAN001082_05496
NZ_APAH01000102.1	Protein Homology	CDS	2631	3638	.	+	0	ID=cds-WP_000104231.1;Parent=gene-CFSAN001082_RS29505;Dbxref=GenBank:WP_000104231.1;Name=WP_000104231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461997.1;locus_tag=CFSAN001082_RS29505;product=Ldh family oxidoreductase;protein_id=WP_000104231.1;transl_table=11
NZ_APAH01000102.1	RefSeq	gene	3677	3921	.	+	.	ID=gene-CFSAN001082_RS29510;Name=CFSAN001082_RS29510;end_range=3921,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29510;old_locus_tag=CFSAN001082_05501;partial=true
NZ_APAH01000102.1	Protein Homology	CDS	3677	3921	.	+	0	ID=cds-WP_023253986.1;Parent=gene-CFSAN001082_RS29510;Dbxref=GenBank:WP_023253986.1;Name=WP_023253986.1;end_range=3921,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461996.1;locus_tag=CFSAN001082_RS29510;partial=true;product=YhcH/YjgK/YiaL family protein;protein_id=WP_023253986.1;transl_table=11
##sequence-region NZ_APAH01000103.1 1 749
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000103.1	RefSeq	region	1	749	.	+	.	ID=NZ_APAH01000103.1:1..749;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000103.1	RefSeq	pseudogene	1	749	.	-	.	ID=gene-CFSAN001082_RS48520;Name=CFSAN001082_RS48520;end_range=749,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48520;old_locus_tag=CFSAN001082_05506;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000103.1	GeneMarkS-2+	CDS	1	749	.	-	1	ID=cds-CFSAN001082_RS48520;Parent=gene-CFSAN001082_RS48520;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=749,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48520;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000104.1 1 10397
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000104.1	RefSeq	region	1	10397	.	+	.	ID=NZ_APAH01000104.1:1..10397;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000104.1	RefSeq	gene	827	1942	.	+	.	ID=gene-CFSAN001082_RS29520;Name=iroB;gbkey=Gene;gene=iroB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29520;old_locus_tag=CFSAN001082_05511
NZ_APAH01000104.1	Protein Homology	CDS	827	1942	.	+	0	ID=cds-WP_001221110.1;Parent=gene-CFSAN001082_RS29520;Dbxref=GenBank:WP_001221110.1;Name=WP_001221110.1;gbkey=CDS;gene=iroB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461700.1;locus_tag=CFSAN001082_RS29520;product=salmochelin biosynthesis C-glycosyltransferase IroB;protein_id=WP_001221110.1;transl_table=11
NZ_APAH01000104.1	RefSeq	gene	2023	5679	.	+	.	ID=gene-CFSAN001082_RS29525;Name=iroC;gbkey=Gene;gene=iroC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29525;old_locus_tag=CFSAN001082_05516
NZ_APAH01000104.1	Protein Homology	CDS	2023	5679	.	+	0	ID=cds-WP_023253988.1;Parent=gene-CFSAN001082_RS29525;Dbxref=GenBank:WP_023253988.1;Name=WP_023253988.1;gbkey=CDS;gene=iroC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461701.1;locus_tag=CFSAN001082_RS29525;product=salmochelin/enterobactin export ABC transporter IroC;protein_id=WP_023253988.1;transl_table=11
NZ_APAH01000104.1	RefSeq	gene	5789	7033	.	+	.	ID=gene-CFSAN001082_RS29530;Name=CFSAN001082_RS29530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29530;old_locus_tag=CFSAN001082_05521
NZ_APAH01000104.1	Protein Homology	CDS	5789	7033	.	+	0	ID=cds-WP_023253989.1;Parent=gene-CFSAN001082_RS29530;Dbxref=GenBank:WP_023253989.1;Name=WP_023253989.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461702.1;locus_tag=CFSAN001082_RS29530;product=esterase family protein;protein_id=WP_023253989.1;transl_table=11
NZ_APAH01000104.1	RefSeq	gene	7065	8000	.	+	.	ID=gene-CFSAN001082_RS29535;Name=CFSAN001082_RS29535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29535;old_locus_tag=CFSAN001082_05526
NZ_APAH01000104.1	Protein Homology	CDS	7065	8000	.	+	0	ID=cds-WP_023253990.1;Parent=gene-CFSAN001082_RS29535;Dbxref=GenBank:WP_023253990.1;Name=WP_023253990.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461703.1;locus_tag=CFSAN001082_RS29535;product=alpha/beta hydrolase;protein_id=WP_023253990.1;transl_table=11
NZ_APAH01000104.1	RefSeq	gene	8042	10216	.	-	.	ID=gene-CFSAN001082_RS29540;Name=CFSAN001082_RS29540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29540;old_locus_tag=CFSAN001082_05531
NZ_APAH01000104.1	Protein Homology	CDS	8042	10216	.	-	0	ID=cds-WP_023253991.1;Parent=gene-CFSAN001082_RS29540;Dbxref=GenBank:WP_023253991.1;Name=WP_023253991.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001542215.1;locus_tag=CFSAN001082_RS29540;product=TonB-dependent siderophore receptor;protein_id=WP_023253991.1;transl_table=11
##sequence-region NZ_APAH01000105.1 1 36245
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000105.1	RefSeq	region	1	36245	.	+	.	ID=NZ_APAH01000105.1:1..36245;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000105.1	RefSeq	gene	1	452	.	-	.	ID=gene-CFSAN001082_RS29545;Name=CFSAN001082_RS29545;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS29545;old_locus_tag=CFSAN001082_r05673;partial=true;start_range=.,1
NZ_APAH01000105.1	cmsearch	rRNA	1	452	.	-	.	ID=rna-CFSAN001082_RS29545;Parent=gene-CFSAN001082_RS29545;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS29545;partial=true;product=16S ribosomal RNA;start_range=.,1
NZ_APAH01000105.1	cmsearch	exon	1	452	.	-	.	ID=exon-CFSAN001082_RS29545-1;Parent=rna-CFSAN001082_RS29545;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS29545;partial=true;product=16S ribosomal RNA;start_range=.,1
NZ_APAH01000105.1	RefSeq	gene	832	1683	.	-	.	ID=gene-CFSAN001082_RS29550;Name=murI;gbkey=Gene;gene=murI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29550;old_locus_tag=CFSAN001082_05536
NZ_APAH01000105.1	Protein Homology	CDS	832	1683	.	-	0	ID=cds-WP_000201804.1;Parent=gene-CFSAN001082_RS29550;Dbxref=GenBank:WP_000201804.1;Name=WP_000201804.1;Ontology_term=GO:0008152,GO:0008881;gbkey=CDS;gene=murI;go_function=glutamate racemase activity|0008881||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463010.1;locus_tag=CFSAN001082_RS29550;product=glutamate racemase;protein_id=WP_000201804.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	1628	3472	.	-	.	ID=gene-CFSAN001082_RS29555;Name=btuB;gbkey=Gene;gene=btuB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29555;old_locus_tag=CFSAN001082_05541
NZ_APAH01000105.1	Protein Homology	CDS	1628	3472	.	-	0	ID=cds-WP_023253992.1;Parent=gene-CFSAN001082_RS29555;Dbxref=GenBank:WP_023253992.1;Name=WP_023253992.1;Ontology_term=GO:0015889,GO:0015420;gbkey=CDS;gene=btuB;go_function=ABC-type vitamin B12 transporter activity|0015420||IEA;go_process=cobalamin transport|0015889||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463009.1;locus_tag=CFSAN001082_RS29555;product=TonB-dependent vitamin B12 receptor BtuB;protein_id=WP_023253992.1;transl_table=11
NZ_APAH01000105.1	cmsearch	riboswitch	3539	3731	.	-	.	ID=id-NZ_APAH01000105.1:3539..3731;Dbxref=RFAM:RF00174;Note=cobalamin riboswitch;bound_moiety=adenosylcobalamin;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_APAH01000105.1	RefSeq	gene	3846	4946	.	+	.	ID=gene-CFSAN001082_RS29560;Name=trmA;gbkey=Gene;gene=trmA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29560;old_locus_tag=CFSAN001082_05546
NZ_APAH01000105.1	Protein Homology	CDS	3846	4946	.	+	0	ID=cds-WP_023200574.1;Parent=gene-CFSAN001082_RS29560;Dbxref=GenBank:WP_023200574.1;Name=WP_023200574.1;Ontology_term=GO:0006396,GO:0030697;gbkey=CDS;gene=trmA;go_function=tRNA (uracil(54)-C5)-methyltransferase activity%2C S-adenosyl methionine-dependent|0030697||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463008.1;locus_tag=CFSAN001082_RS29560;product=tRNA (uridine(54)-C5)-methyltransferase TrmA;protein_id=WP_023200574.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	4993	5352	.	-	.	ID=gene-CFSAN001082_RS29565;Name=CFSAN001082_RS29565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29565;old_locus_tag=CFSAN001082_05551
NZ_APAH01000105.1	Protein Homology	CDS	4993	5352	.	-	0	ID=cds-WP_000813838.1;Parent=gene-CFSAN001082_RS29565;Dbxref=GenBank:WP_000813838.1;Name=WP_000813838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463007.1;locus_tag=CFSAN001082_RS29565;product=YijD family membrane protein;protein_id=WP_000813838.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	5368	6003	.	-	.	ID=gene-CFSAN001082_RS29570;Name=fabR;gbkey=Gene;gene=fabR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29570;old_locus_tag=CFSAN001082_05556
NZ_APAH01000105.1	Protein Homology	CDS	5368	6003	.	-	0	ID=cds-WP_000971958.1;Parent=gene-CFSAN001082_RS29570;Dbxref=GenBank:WP_000971958.1;Name=WP_000971958.1;Ontology_term=GO:0003677;gbkey=CDS;gene=fabR;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463006.3;locus_tag=CFSAN001082_RS29570;product=HTH-type transcriptional repressor FabR;protein_id=WP_000971958.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	6202	7602	.	+	.	ID=gene-CFSAN001082_RS29575;Name=sthA;gbkey=Gene;gene=sthA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29575;old_locus_tag=CFSAN001082_05561
NZ_APAH01000105.1	Protein Homology	CDS	6202	7602	.	+	0	ID=cds-WP_001120789.1;Parent=gene-CFSAN001082_RS29575;Dbxref=GenBank:WP_001120789.1;Name=WP_001120789.1;Ontology_term=GO:0045454,GO:0003957,GO:0050660;gbkey=CDS;gene=sthA;go_function=NAD(P)+ transhydrogenase (Si-specific) activity|0003957||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463005.1;locus_tag=CFSAN001082_RS29575;product=Si-specific NAD(P)(+) transhydrogenase;protein_id=WP_001120789.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	7585	8502	.	-	.	ID=gene-CFSAN001082_RS29580;Name=oxyR;gbkey=Gene;gene=oxyR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29580;old_locus_tag=CFSAN001082_05566
NZ_APAH01000105.1	Protein Homology	CDS	7585	8502	.	-	0	ID=cds-WP_001025919.1;Parent=gene-CFSAN001082_RS29580;Dbxref=GenBank:WP_001025919.1;Name=WP_001025919.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=oxyR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016831323.1;locus_tag=CFSAN001082_RS29580;product=DNA-binding transcriptional regulator OxyR;protein_id=WP_001025919.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	8786	10162	.	-	.	ID=gene-CFSAN001082_RS29585;Name=argH;gbkey=Gene;gene=argH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29585;old_locus_tag=CFSAN001082_05571
NZ_APAH01000105.1	Protein Homology	CDS	8786	10162	.	-	0	ID=cds-WP_023195937.1;Parent=gene-CFSAN001082_RS29585;Dbxref=GenBank:WP_023195937.1;Name=WP_023195937.1;Ontology_term=GO:0042450,GO:0004056;gbkey=CDS;gene=argH;go_function=argininosuccinate lyase activity|0004056||IEA;go_process=arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463003.1;locus_tag=CFSAN001082_RS29585;product=argininosuccinate lyase;protein_id=WP_023195937.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	10280	11056	.	-	.	ID=gene-CFSAN001082_RS29590;Name=argB;gbkey=Gene;gene=argB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29590;old_locus_tag=CFSAN001082_05576
NZ_APAH01000105.1	Protein Homology	CDS	10280	11056	.	-	0	ID=cds-WP_089082247.1;Parent=gene-CFSAN001082_RS29590;Dbxref=GenBank:WP_089082247.1;Name=WP_089082247.1;Ontology_term=GO:0006592,GO:0003991,GO:0005737;gbkey=CDS;gene=argB;go_component=cytoplasm|0005737||IEA;go_function=acetylglutamate kinase activity|0003991||IEA;go_process=ornithine biosynthetic process|0006592||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463002.3;locus_tag=CFSAN001082_RS29590;product=acetylglutamate kinase;protein_id=WP_089082247.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	11064	12068	.	-	.	ID=gene-CFSAN001082_RS29595;Name=argC;gbkey=Gene;gene=argC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29595;old_locus_tag=CFSAN001082_05581
NZ_APAH01000105.1	Protein Homology	CDS	11064	12068	.	-	0	ID=cds-WP_017441856.1;Parent=gene-CFSAN001082_RS29595;Dbxref=GenBank:WP_017441856.1;Name=WP_017441856.1;Ontology_term=GO:0006526,GO:0006592,GO:0003942,GO:0070401;gbkey=CDS;gene=argC;go_function=N-acetyl-gamma-glutamyl-phosphate reductase activity|0003942||IEA,NADP+ binding|0070401||IEA;go_process=L-arginine biosynthetic process|0006526||IEA,ornithine biosynthetic process|0006592||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122770.1;locus_tag=CFSAN001082_RS29595;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=WP_017441856.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	12157	13308	.	+	.	ID=gene-CFSAN001082_RS29600;Name=argE;gbkey=Gene;gene=argE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29600;old_locus_tag=CFSAN001082_05586
NZ_APAH01000105.1	Protein Homology	CDS	12157	13308	.	+	0	ID=cds-WP_000800208.1;Parent=gene-CFSAN001082_RS29600;Dbxref=GenBank:WP_000800208.1;Name=WP_000800208.1;Ontology_term=GO:0006526,GO:0019213;gbkey=CDS;gene=argE;go_function=deacetylase activity|0019213||IEA;go_process=L-arginine biosynthetic process|0006526||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463000.1;locus_tag=CFSAN001082_RS29600;product=acetylornithine deacetylase;protein_id=WP_000800208.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	13700	16351	.	+	.	ID=gene-CFSAN001082_RS29605;Name=ppc;gbkey=Gene;gene=ppc;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29605;old_locus_tag=CFSAN001082_05591
NZ_APAH01000105.1	Protein Homology	CDS	13700	16351	.	+	0	ID=cds-WP_001005548.1;Parent=gene-CFSAN001082_RS29605;Dbxref=GenBank:WP_001005548.1;Name=WP_001005548.1;Ontology_term=GO:0006099,GO:0015977,GO:0008964;gbkey=CDS;gene=ppc;go_function=phosphoenolpyruvate carboxylase activity|0008964||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,carbon fixation|0015977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004203687.1;locus_tag=CFSAN001082_RS29605;product=phosphoenolpyruvate carboxylase;protein_id=WP_001005548.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	16562	18295	.	+	.	ID=gene-CFSAN001082_RS29610;Name=CFSAN001082_RS29610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29610;old_locus_tag=CFSAN001082_05596
NZ_APAH01000105.1	Protein Homology	CDS	16562	18295	.	+	0	ID=cds-WP_001528929.1;Parent=gene-CFSAN001082_RS29610;Dbxref=GenBank:WP_001528929.1;Name=WP_001528929.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462998.1;locus_tag=CFSAN001082_RS29610;product=phosphoethanolamine transferase CptA;protein_id=WP_001528929.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	18456	19307	.	+	.	ID=gene-CFSAN001082_RS29615;Name=CFSAN001082_RS29615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29615;old_locus_tag=CFSAN001082_05601
NZ_APAH01000105.1	Protein Homology	CDS	18456	19307	.	+	0	ID=cds-WP_023253993.1;Parent=gene-CFSAN001082_RS29615;Dbxref=GenBank:WP_023253993.1;Name=WP_023253993.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462997.1;locus_tag=CFSAN001082_RS29615;product=helix-turn-helix transcriptional regulator;protein_id=WP_023253993.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	19294	19647	.	-	.	ID=gene-CFSAN001082_RS29620;Name=CFSAN001082_RS29620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29620;old_locus_tag=CFSAN001082_05606
NZ_APAH01000105.1	Protein Homology	CDS	19294	19647	.	-	0	ID=cds-WP_000290522.1;Parent=gene-CFSAN001082_RS29620;Dbxref=GenBank:WP_000290522.1;Name=WP_000290522.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462996.1;locus_tag=CFSAN001082_RS29620;product=PTS fructose-like transporter subunit IIB;protein_id=WP_000290522.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	19649	20527	.	-	.	ID=gene-CFSAN001082_RS29625;Name=CFSAN001082_RS29625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29625;old_locus_tag=CFSAN001082_05611
NZ_APAH01000105.1	Protein Homology	CDS	19649	20527	.	-	0	ID=cds-WP_023253994.1;Parent=gene-CFSAN001082_RS29625;Dbxref=GenBank:WP_023253994.1;Name=WP_023253994.1;Ontology_term=GO:0016491,GO:0051536;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462995.1;locus_tag=CFSAN001082_RS29625;product=[formate-C-acetyltransferase]-activating enzyme;protein_id=WP_023253994.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	20493	22790	.	-	.	ID=gene-CFSAN001082_RS29630;Name=CFSAN001082_RS29630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29630;old_locus_tag=CFSAN001082_05616
NZ_APAH01000105.1	Protein Homology	CDS	20493	22790	.	-	0	ID=cds-WP_000149714.1;Parent=gene-CFSAN001082_RS29630;Dbxref=GenBank:WP_000149714.1;Name=WP_000149714.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462994.1;locus_tag=CFSAN001082_RS29630;product=formate C-acetyltransferase;protein_id=WP_000149714.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	22889	23209	.	-	.	ID=gene-CFSAN001082_RS29635;Name=CFSAN001082_RS29635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29635;old_locus_tag=CFSAN001082_05621
NZ_APAH01000105.1	Protein Homology	CDS	22889	23209	.	-	0	ID=cds-WP_000161258.1;Parent=gene-CFSAN001082_RS29635;Dbxref=GenBank:WP_000161258.1;Name=WP_000161258.1;Ontology_term=GO:0009401,GO:0022877;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462993.1;locus_tag=CFSAN001082_RS29635;product=PTS fructose-like transporter subunit IIB;protein_id=WP_000161258.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	23224	24303	.	-	.	ID=gene-CFSAN001082_RS29640;Name=CFSAN001082_RS29640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29640;old_locus_tag=CFSAN001082_05626
NZ_APAH01000105.1	Protein Homology	CDS	23224	24303	.	-	0	ID=cds-WP_000661597.1;Parent=gene-CFSAN001082_RS29640;Dbxref=GenBank:WP_000661597.1;Name=WP_000661597.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462992.1;locus_tag=CFSAN001082_RS29640;product=PTS fructose transporter subunit EIIC;protein_id=WP_000661597.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	24612	27113	.	+	.	ID=gene-CFSAN001082_RS29645;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29645;old_locus_tag=CFSAN001082_05631
NZ_APAH01000105.1	Protein Homology	CDS	24612	27113	.	+	0	ID=cds-WP_001128491.1;Parent=gene-CFSAN001082_RS29645;Dbxref=GenBank:WP_001128491.1;Name=WP_001128491.1;Ontology_term=GO:0009401,GO:0008965;gbkey=CDS;gene=ptsP;go_function=phosphoenolpyruvate-protein phosphotransferase activity|0008965||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462991.1;locus_tag=CFSAN001082_RS29645;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=WP_001128491.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	27124	27786	.	+	.	ID=gene-CFSAN001082_RS29650;Name=fsa;gbkey=Gene;gene=fsa;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29650;old_locus_tag=CFSAN001082_05636
NZ_APAH01000105.1	Protein Homology	CDS	27124	27786	.	+	0	ID=cds-WP_000424866.1;Parent=gene-CFSAN001082_RS29650;Dbxref=GenBank:WP_000424866.1;Name=WP_000424866.1;Ontology_term=GO:0005975,GO:0016832;gbkey=CDS;gene=fsa;go_function=aldehyde-lyase activity|0016832||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462990.1;locus_tag=CFSAN001082_RS29650;product=fructose-6-phosphate aldolase;protein_id=WP_000424866.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	27798	28901	.	+	.	ID=gene-CFSAN001082_RS29655;Name=gldA;gbkey=Gene;gene=gldA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29655;old_locus_tag=CFSAN001082_05641
NZ_APAH01000105.1	Protein Homology	CDS	27798	28901	.	+	0	ID=cds-WP_000374041.1;Parent=gene-CFSAN001082_RS29655;Dbxref=GenBank:WP_000374041.1;Name=WP_000374041.1;Ontology_term=GO:0019588,GO:0051596,GO:0008888,GO:0019147;gbkey=CDS;gene=gldA;go_function=glycerol dehydrogenase (NAD+) activity|0008888||IEA,(R)-aminopropanol dehydrogenase activity|0019147||IEA;go_process=anaerobic glycerol catabolic process|0019588||IEA,methylglyoxal catabolic process|0051596||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462989.1;locus_tag=CFSAN001082_RS29655;product=bifunctional L-1%2C2-propanediol dehydrogenase/glycerol dehydrogenase;protein_id=WP_000374041.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	29160	29783	.	+	.	ID=gene-CFSAN001082_RS29660;Name=CFSAN001082_RS29660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29660;old_locus_tag=CFSAN001082_05646
NZ_APAH01000105.1	Protein Homology	CDS	29160	29783	.	+	0	ID=cds-WP_000666692.1;Parent=gene-CFSAN001082_RS29660;Dbxref=GenBank:WP_000666692.1;Name=WP_000666692.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462988.1;locus_tag=CFSAN001082_RS29660;product=DUF1287 domain-containing protein;protein_id=WP_000666692.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	29841	32021	.	-	.	ID=gene-CFSAN001082_RS29665;Name=katG;gbkey=Gene;gene=katG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29665;old_locus_tag=CFSAN001082_05651
NZ_APAH01000105.1	Protein Homology	CDS	29841	32021	.	-	0	ID=cds-WP_023253995.1;Parent=gene-CFSAN001082_RS29665;Dbxref=GenBank:WP_023253995.1;Name=WP_023253995.1;Ontology_term=GO:0006979,GO:0004096,GO:0004601,GO:0020037;gbkey=CDS;gene=katG;go_function=catalase activity|0004096||IEA,peroxidase activity|0004601||IEA,heme binding|0020037||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462987.1;locus_tag=CFSAN001082_RS29665;product=catalase/peroxidase HPI;protein_id=WP_023253995.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	32186	33076	.	-	.	ID=gene-CFSAN001082_RS29670;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29670;old_locus_tag=CFSAN001082_05656
NZ_APAH01000105.1	Protein Homology	CDS	32186	33076	.	-	0	ID=cds-WP_000007507.1;Parent=gene-CFSAN001082_RS29670;Dbxref=GenBank:WP_000007507.1;Name=WP_000007507.1;Ontology_term=GO:0009086,GO:0004489;gbkey=CDS;gene=metF;go_function=methylenetetrahydrofolate reductase (NAD(P)H) activity|0004489||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462986.1;locus_tag=CFSAN001082_RS29670;product=methylenetetrahydrofolate reductase;protein_id=WP_000007507.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	33271	34827	.	-	.	ID=gene-CFSAN001082_RS29675;Name=CFSAN001082_RS29675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29675;old_locus_tag=CFSAN001082_05661
NZ_APAH01000105.1	Protein Homology	CDS	33271	34827	.	-	0	ID=cds-WP_000865252.1;Parent=gene-CFSAN001082_RS29675;Dbxref=GenBank:WP_000865252.1;Name=WP_000865252.1;Ontology_term=GO:0009166,GO:0000166,GO:0008253,GO:0042578,GO:0046872;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,5'-nucleotidase activity|0008253||IEA,phosphoric ester hydrolase activity|0042578||IEA,metal ion binding|0046872||IEA;go_process=nucleotide catabolic process|0009166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462985.1;locus_tag=CFSAN001082_RS29675;product=bifunctional metallophosphatase/5'-nucleotidase;protein_id=WP_000865252.1;transl_table=11
NZ_APAH01000105.1	RefSeq	gene	34963	36087	.	+	.	ID=gene-CFSAN001082_RS29680;Name=CFSAN001082_RS29680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29680;old_locus_tag=CFSAN001082_05666
NZ_APAH01000105.1	Protein Homology	CDS	34963	36087	.	+	0	ID=cds-WP_001134806.1;Parent=gene-CFSAN001082_RS29680;Dbxref=GenBank:WP_001134806.1;Name=WP_001134806.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462984.1;locus_tag=CFSAN001082_RS29680;product=hypothetical protein;protein_id=WP_001134806.1;transl_table=11
##sequence-region NZ_APAH01000106.1 1 2844
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000106.1	RefSeq	region	1	2844	.	+	.	ID=NZ_APAH01000106.1:1..2844;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000106.1	RefSeq	gene	69	800	.	+	.	ID=gene-CFSAN001082_RS29685;Name=CFSAN001082_RS29685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29685;old_locus_tag=CFSAN001082_05673
NZ_APAH01000106.1	Protein Homology	CDS	69	800	.	+	0	ID=cds-WP_023253996.1;Parent=gene-CFSAN001082_RS29685;Dbxref=GenBank:WP_023253996.1;Name=WP_023253996.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462001.1;locus_tag=CFSAN001082_RS29685;product=hypothetical protein;protein_id=WP_023253996.1;transl_table=11
NZ_APAH01000106.1	RefSeq	gene	954	1754	.	+	.	ID=gene-CFSAN001082_RS29690;Name=CFSAN001082_RS29690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29690;old_locus_tag=CFSAN001082_05678
NZ_APAH01000106.1	Protein Homology	CDS	954	1754	.	+	0	ID=cds-WP_001576357.1;Parent=gene-CFSAN001082_RS29690;Dbxref=GenBank:WP_001576357.1;Name=WP_001576357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462000.3;locus_tag=CFSAN001082_RS29690;product=FadR/GntR family transcriptional regulator;protein_id=WP_001576357.1;transl_table=11
NZ_APAH01000106.1	RefSeq	gene	1833	2099	.	-	.	ID=gene-CFSAN001082_RS49065;Name=CFSAN001082_RS49065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49065;old_locus_tag=CFSAN001082_05683
NZ_APAH01000106.1	GeneMarkS-2+	CDS	1833	2099	.	-	0	ID=cds-WP_023165945.1;Parent=gene-CFSAN001082_RS49065;Dbxref=GenBank:WP_023165945.1;Name=WP_023165945.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS49065;product=hypothetical protein;protein_id=WP_023165945.1;transl_table=11
NZ_APAH01000106.1	RefSeq	pseudogene	2065	2436	.	-	.	ID=gene-CFSAN001082_RS49180;Name=CFSAN001082_RS49180;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49180;pseudo=true
NZ_APAH01000106.1	Protein Homology	CDS	2065	2436	.	-	0	ID=cds-CFSAN001082_RS49180;Parent=gene-CFSAN001082_RS49180;Note=internal stop;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF014766.6;locus_tag=CFSAN001082_RS49180;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000107.1 1 535
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000107.1	RefSeq	region	1	535	.	+	.	ID=NZ_APAH01000107.1:1..535;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000107.1	RefSeq	pseudogene	1	359	.	-	.	ID=gene-CFSAN001082_RS46675;Name=siiC;gbkey=Gene;gene=siiC;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46675;old_locus_tag=CFSAN001082_05688;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000107.1	Protein Homology	CDS	1	359	.	-	0	ID=cds-CFSAN001082_RS46675;Parent=gene-CFSAN001082_RS46675;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=siiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463124.1;locus_tag=CFSAN001082_RS46675;partial=true;product=SPI-4 type I secretion system protein SiiC;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000107.1	RefSeq	pseudogene	349	535	.	-	.	ID=gene-CFSAN001082_RS29695;Name=CFSAN001082_RS29695;end_range=535,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS29695;old_locus_tag=CFSAN001082_05693;partial=true;pseudo=true
NZ_APAH01000107.1	Protein Homology	CDS	349	535	.	-	1	ID=cds-CFSAN001082_RS29695;Parent=gene-CFSAN001082_RS29695;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=535,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463123.1;locus_tag=CFSAN001082_RS29695;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000108.1 1 4444
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000108.1	RefSeq	region	1	4444	.	+	.	ID=NZ_APAH01000108.1:1..4444;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000108.1	RefSeq	pseudogene	162	407	.	-	.	ID=gene-CFSAN001082_RS49110;Name=CFSAN001082_RS49110;end_range=407,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49110;partial=true;pseudo=true
NZ_APAH01000108.1	Protein Homology	CDS	162	407	.	-	0	ID=cds-CFSAN001082_RS49110;Parent=gene-CFSAN001082_RS49110;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=407,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524936.1;locus_tag=CFSAN001082_RS49110;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000108.1	RefSeq	gene	698	787	.	-	.	ID=gene-CFSAN001082_RS29700;Name=CFSAN001082_RS29700;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS29700;old_locus_tag=CFSAN001082_t05730
NZ_APAH01000108.1	tRNAscan-SE	tRNA	698	787	.	-	.	ID=rna-CFSAN001082_RS29700;Parent=gene-CFSAN001082_RS29700;anticodon=(pos:complement(751..753));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS29700;product=tRNA-Ser
NZ_APAH01000108.1	tRNAscan-SE	exon	698	787	.	-	.	ID=exon-CFSAN001082_RS29700-1;Parent=rna-CFSAN001082_RS29700;anticodon=(pos:complement(751..753));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS29700;product=tRNA-Ser
NZ_APAH01000108.1	RefSeq	gene	876	1673	.	+	.	ID=gene-CFSAN001082_RS29705;Name=mtfA;gbkey=Gene;gene=mtfA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29705;old_locus_tag=CFSAN001082_05698
NZ_APAH01000108.1	Protein Homology	CDS	876	1673	.	+	0	ID=cds-WP_000598920.1;Parent=gene-CFSAN001082_RS29705;Dbxref=GenBank:WP_000598920.1;Name=WP_000598920.1;Ontology_term=GO:0008237;gbkey=CDS;gene=mtfA;go_function=metallopeptidase activity|0008237||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460951.1;locus_tag=CFSAN001082_RS29705;product=DgsA anti-repressor MtfA;protein_id=WP_000598920.1;transl_table=11
NZ_APAH01000108.1	RefSeq	gene	1774	1849	.	+	.	ID=gene-CFSAN001082_RS29710;Name=CFSAN001082_RS29710;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS29710;old_locus_tag=CFSAN001082_t05732
NZ_APAH01000108.1	tRNAscan-SE	tRNA	1774	1849	.	+	.	ID=rna-CFSAN001082_RS29710;Parent=gene-CFSAN001082_RS29710;anticodon=(pos:1807..1809);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS29710;product=tRNA-Asn
NZ_APAH01000108.1	tRNAscan-SE	exon	1774	1849	.	+	.	ID=exon-CFSAN001082_RS29710-1;Parent=rna-CFSAN001082_RS29710;anticodon=(pos:1807..1809);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS29710;product=tRNA-Asn
NZ_APAH01000108.1	RefSeq	pseudogene	2017	2322	.	+	.	ID=gene-CFSAN001082_RS29715;Name=CFSAN001082_RS29715;end_range=2322,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS29715;old_locus_tag=CFSAN001082_05708;partial=true;pseudo=true
NZ_APAH01000108.1	Protein Homology	CDS	2017	2322	.	+	0	ID=cds-CFSAN001082_RS29715;Parent=gene-CFSAN001082_RS29715;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003677;end_range=2322,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001751368.1;locus_tag=CFSAN001082_RS29715;partial=true;product=Arm DNA-binding domain-containing protein;pseudo=true;transl_table=11
NZ_APAH01000108.1	RefSeq	gene	2744	2819	.	+	.	ID=gene-CFSAN001082_RS29720;Name=CFSAN001082_RS29720;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS29720;old_locus_tag=CFSAN001082_t05734
NZ_APAH01000108.1	tRNAscan-SE	tRNA	2744	2819	.	+	.	ID=rna-CFSAN001082_RS29720;Parent=gene-CFSAN001082_RS29720;anticodon=(pos:2777..2779);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS29720;product=tRNA-Asn
NZ_APAH01000108.1	tRNAscan-SE	exon	2744	2819	.	+	.	ID=exon-CFSAN001082_RS29720-1;Parent=rna-CFSAN001082_RS29720;anticodon=(pos:2777..2779);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS29720;product=tRNA-Asn
NZ_APAH01000108.1	RefSeq	gene	2985	3509	.	+	.	ID=gene-CFSAN001082_RS29725;Name=CFSAN001082_RS29725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29725;old_locus_tag=CFSAN001082_05718
NZ_APAH01000108.1	Protein Homology	CDS	2985	3509	.	+	0	ID=cds-WP_023254000.1;Parent=gene-CFSAN001082_RS29725;Dbxref=GenBank:WP_023254000.1;Name=WP_023254000.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460952.1;locus_tag=CFSAN001082_RS29725;product=hypothetical protein;protein_id=WP_023254000.1;transl_table=11
NZ_APAH01000108.1	RefSeq	gene	3982	4444	.	+	.	ID=gene-CFSAN001082_RS29730;Name=CFSAN001082_RS29730;end_range=4444,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29730;old_locus_tag=CFSAN001082_05723;partial=true
NZ_APAH01000108.1	Protein Homology	CDS	3982	4444	.	+	0	ID=cds-WP_023254001.1;Parent=gene-CFSAN001082_RS29730;Dbxref=GenBank:WP_023254001.1;Name=WP_023254001.1;end_range=4444,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000517119.1;locus_tag=CFSAN001082_RS29730;partial=true;product=phage integrase N-terminal domain-containing protein;protein_id=WP_023254001.1;transl_table=11
##sequence-region NZ_APAH01000109.1 1 360
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000109.1	RefSeq	region	1	360	.	+	.	ID=NZ_APAH01000109.1:1..360;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000109.1	RefSeq	pseudogene	1	218	.	-	.	ID=gene-CFSAN001082_RS46690;Name=CFSAN001082_RS46690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46690;old_locus_tag=CFSAN001082_05734;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000109.1	Protein Homology	CDS	1	218	.	-	0	ID=cds-CFSAN001082_RS46690;Parent=gene-CFSAN001082_RS46690;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000400600.1;locus_tag=CFSAN001082_RS46690;partial=true;product=non-LEE encoded effector protein NleB;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000110.1 1 9830
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000110.1	RefSeq	region	1	9830	.	+	.	ID=NZ_APAH01000110.1:1..9830;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000110.1	RefSeq	gene	1	1453	.	+	.	ID=gene-CFSAN001082_RS29735;Name=spiA;gbkey=Gene;gene=spiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29735;old_locus_tag=CFSAN001082_05739;partial=true;start_range=.,1
NZ_APAH01000110.1	Protein Homology	CDS	1	1453	.	+	1	ID=cds-WP_023254003.1;Parent=gene-CFSAN001082_RS29735;Dbxref=GenBank:WP_023254003.1;Name=WP_023254003.1;gbkey=CDS;gene=spiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460359.1;locus_tag=CFSAN001082_RS29735;partial=true;product=SPI-2 type III secretion system protein SpiA;protein_id=WP_023254003.1;start_range=.,1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	1434	2645	.	+	.	ID=gene-CFSAN001082_RS29740;Name=ssaD;gbkey=Gene;gene=ssaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29740;old_locus_tag=CFSAN001082_05744
NZ_APAH01000110.1	Protein Homology	CDS	1434	2645	.	+	0	ID=cds-WP_000323780.1;Parent=gene-CFSAN001082_RS29740;Dbxref=GenBank:WP_000323780.1;Name=WP_000323780.1;gbkey=CDS;gene=ssaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460360.1;locus_tag=CFSAN001082_RS29740;product=SctD family type III secretion system inner membrane ring subunit SsaD;protein_id=WP_000323780.1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	2653	2895	.	+	.	ID=gene-CFSAN001082_RS29745;Name=ssaE;gbkey=Gene;gene=ssaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29745;old_locus_tag=CFSAN001082_05749
NZ_APAH01000110.1	Protein Homology	CDS	2653	2895	.	+	0	ID=cds-WP_000210204.1;Parent=gene-CFSAN001082_RS29745;Dbxref=GenBank:WP_000210204.1;Name=WP_000210204.1;gbkey=CDS;gene=ssaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460361.1;locus_tag=CFSAN001082_RS29745;product=YscE family type III secretion system co-chaperone SsaE;protein_id=WP_000210204.1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	3158	3484	.	+	.	ID=gene-CFSAN001082_RS29750;Name=sseA;gbkey=Gene;gene=sseA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29750;old_locus_tag=CFSAN001082_05754
NZ_APAH01000110.1	Protein Homology	CDS	3158	3484	.	+	0	ID=cds-WP_000972855.1;Parent=gene-CFSAN001082_RS29750;Dbxref=GenBank:WP_000972855.1;Name=WP_000972855.1;gbkey=CDS;gene=sseA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460362.1;locus_tag=CFSAN001082_RS29750;product=SPI-2 type III secretion system chaperone SseA;protein_id=WP_000972855.1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	3491	4081	.	+	.	ID=gene-CFSAN001082_RS29755;Name=sseB;gbkey=Gene;gene=sseB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29755;old_locus_tag=CFSAN001082_05759
NZ_APAH01000110.1	Protein Homology	CDS	3491	4081	.	+	0	ID=cds-WP_000094420.1;Parent=gene-CFSAN001082_RS29755;Dbxref=GenBank:WP_000094420.1;Name=WP_000094420.1;gbkey=CDS;gene=sseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460363.1;locus_tag=CFSAN001082_RS29755;product=SPI-2 type III secretion system translocon protein SseB;protein_id=WP_000094420.1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	4078	4551	.	+	.	ID=gene-CFSAN001082_RS29760;Name=sscA;gbkey=Gene;gene=sscA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29760;old_locus_tag=CFSAN001082_05764
NZ_APAH01000110.1	Protein Homology	CDS	4078	4551	.	+	0	ID=cds-WP_000711023.1;Parent=gene-CFSAN001082_RS29760;Dbxref=GenBank:WP_000711023.1;Name=WP_000711023.1;gbkey=CDS;gene=sscA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460364.1;locus_tag=CFSAN001082_RS29760;product=SycD/LcrH family type III secretion system chaperone SscA;protein_id=WP_000711023.1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	4554	6008	.	+	.	ID=gene-CFSAN001082_RS29765;Name=CFSAN001082_RS29765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29765;old_locus_tag=CFSAN001082_05769
NZ_APAH01000110.1	Protein Homology	CDS	4554	6008	.	+	0	ID=cds-WP_023254004.1;Parent=gene-CFSAN001082_RS29765;Dbxref=GenBank:WP_023254004.1;Name=WP_023254004.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460365.1;locus_tag=CFSAN001082_RS29765;product=type III secretion system translocon protein;protein_id=WP_023254004.1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	6024	6611	.	+	.	ID=gene-CFSAN001082_RS29770;Name=sseD;gbkey=Gene;gene=sseD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29770;old_locus_tag=CFSAN001082_05774
NZ_APAH01000110.1	Protein Homology	CDS	6024	6611	.	+	0	ID=cds-WP_023254005.1;Parent=gene-CFSAN001082_RS29770;Dbxref=GenBank:WP_023254005.1;Name=WP_023254005.1;gbkey=CDS;gene=sseD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460366.1;locus_tag=CFSAN001082_RS29770;product=SPI-2 type III secretion system translocon protein SseD;protein_id=WP_023254005.1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	6614	7030	.	+	.	ID=gene-CFSAN001082_RS29775;Name=sseE;gbkey=Gene;gene=sseE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29775;old_locus_tag=CFSAN001082_05779
NZ_APAH01000110.1	Protein Homology	CDS	6614	7030	.	+	0	ID=cds-WP_000249606.1;Parent=gene-CFSAN001082_RS29775;Dbxref=GenBank:WP_000249606.1;Name=WP_000249606.1;gbkey=CDS;gene=sseE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460367.1;locus_tag=CFSAN001082_RS29775;product=LcrR family type III secretion system chaperone SseE;protein_id=WP_000249606.1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	7082	7516	.	+	.	ID=gene-CFSAN001082_RS29780;Name=sscB;gbkey=Gene;gene=sscB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29780;old_locus_tag=CFSAN001082_05784
NZ_APAH01000110.1	Protein Homology	CDS	7082	7516	.	+	0	ID=cds-WP_020898727.1;Parent=gene-CFSAN001082_RS29780;Dbxref=GenBank:WP_020898727.1;Name=WP_020898727.1;gbkey=CDS;gene=sscB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460368.1;locus_tag=CFSAN001082_RS29780;product=SycD/LcrH family type III secretion system chaperone SscB;protein_id=WP_020898727.1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	7532	8314	.	+	.	ID=gene-CFSAN001082_RS29785;Name=sseF;gbkey=Gene;gene=sseF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29785;old_locus_tag=CFSAN001082_05789
NZ_APAH01000110.1	Protein Homology	CDS	7532	8314	.	+	0	ID=cds-WP_023194622.1;Parent=gene-CFSAN001082_RS29785;Dbxref=GenBank:WP_023194622.1;Name=WP_023194622.1;gbkey=CDS;gene=sseF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460369.1;locus_tag=CFSAN001082_RS29785;product=type III secretion systems effector SseF;protein_id=WP_023194622.1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	8311	9000	.	+	.	ID=gene-CFSAN001082_RS29790;Name=sseG;gbkey=Gene;gene=sseG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29790;old_locus_tag=CFSAN001082_05794
NZ_APAH01000110.1	Protein Homology	CDS	8311	9000	.	+	0	ID=cds-WP_000805837.1;Parent=gene-CFSAN001082_RS29790;Dbxref=GenBank:WP_000805837.1;Name=WP_000805837.1;Note=SseG%2C from Salmonella pathogenicity island 2%2C is a type III secretion system (T3SS) effector protein.;gbkey=CDS;gene=sseG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460370.1;locus_tag=CFSAN001082_RS29790;product=pathogenicity island 2 effector protein SseG;protein_id=WP_000805837.1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	9094	9309	.	+	.	ID=gene-CFSAN001082_RS29795;Name=ssaG;gbkey=Gene;gene=ssaG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29795;old_locus_tag=CFSAN001082_05799
NZ_APAH01000110.1	Protein Homology	CDS	9094	9309	.	+	0	ID=cds-WP_000350226.1;Parent=gene-CFSAN001082_RS29795;Dbxref=GenBank:WP_000350226.1;Name=WP_000350226.1;gbkey=CDS;gene=ssaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460371.1;locus_tag=CFSAN001082_RS29795;product=type III secretion system needle filament protein SsaG;protein_id=WP_000350226.1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	9287	9577	.	+	.	ID=gene-CFSAN001082_RS0123085;Name=CFSAN001082_RS0123085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123085;old_locus_tag=CFSAN001082_05804
NZ_APAH01000110.1	Protein Homology	CDS	9287	9577	.	+	0	ID=cds-WP_000444713.1;Parent=gene-CFSAN001082_RS0123085;Dbxref=GenBank:WP_000444713.1;Name=WP_000444713.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001531123.1;locus_tag=CFSAN001082_RS0123085;product=EscG/YscG/SsaH family type III secretion system needle protein co-chaperone;protein_id=WP_000444713.1;transl_table=11
NZ_APAH01000110.1	RefSeq	gene	9589	9830	.	+	.	ID=gene-CFSAN001082_RS29800;Name=ssaI;end_range=9830,.;gbkey=Gene;gene=ssaI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29800;old_locus_tag=CFSAN001082_05809;partial=true
NZ_APAH01000110.1	Protein Homology	CDS	9589	9830	.	+	0	ID=cds-WP_023254006.1;Parent=gene-CFSAN001082_RS29800;Dbxref=GenBank:WP_023254006.1;Name=WP_023254006.1;end_range=9830,.;gbkey=CDS;gene=ssaI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460373.1;locus_tag=CFSAN001082_RS29800;partial=true;product=SctI family type III secretion system inner rod subunit SsaI;protein_id=WP_023254006.1;transl_table=11
##sequence-region NZ_APAH01000111.1 1 8844
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000111.1	RefSeq	region	1	8844	.	+	.	ID=NZ_APAH01000111.1:1..8844;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000111.1	RefSeq	gene	1	123	.	+	.	ID=gene-CFSAN001082_RS46695;Name=CFSAN001082_RS46695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46695;partial=true;start_range=.,1
NZ_APAH01000111.1	Protein Homology	CDS	1	123	.	+	0	ID=cds-WP_237747775.1;Parent=gene-CFSAN001082_RS46695;Dbxref=GenBank:WP_237747775.1;Name=WP_237747775.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460103.1;locus_tag=CFSAN001082_RS46695;partial=true;product=oligogalacturonate-specific porin KdgM family protein;protein_id=WP_237747775.1;start_range=.,1;transl_table=11
NZ_APAH01000111.1	RefSeq	gene	406	1686	.	+	.	ID=gene-CFSAN001082_RS29805;Name=CFSAN001082_RS29805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29805;old_locus_tag=CFSAN001082_05814
NZ_APAH01000111.1	Protein Homology	CDS	406	1686	.	+	0	ID=cds-WP_023254007.1;Parent=gene-CFSAN001082_RS29805;Dbxref=GenBank:WP_023254007.1;Name=WP_023254007.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460104.1;locus_tag=CFSAN001082_RS29805;product=MFS transporter;protein_id=WP_023254007.1;transl_table=11
NZ_APAH01000111.1	RefSeq	gene	1697	2803	.	+	.	ID=gene-CFSAN001082_RS29810;Name=CFSAN001082_RS29810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29810;old_locus_tag=CFSAN001082_05819
NZ_APAH01000111.1	Protein Homology	CDS	1697	2803	.	+	0	ID=cds-WP_000988589.1;Parent=gene-CFSAN001082_RS29810;Dbxref=GenBank:WP_000988589.1;Name=WP_000988589.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460105.1;locus_tag=CFSAN001082_RS29810;product=Gfo/Idh/MocA family protein;protein_id=WP_000988589.1;transl_table=11
NZ_APAH01000111.1	RefSeq	gene	2955	3088	.	-	.	ID=gene-CFSAN001082_RS46265;Name=CFSAN001082_RS46265;gbkey=Gene;gene_biotype=ncRNA;locus_tag=CFSAN001082_RS46265
NZ_APAH01000111.1	cmsearch	ncRNA	2955	3088	.	-	.	ID=rna-CFSAN001082_RS46265;Parent=gene-CFSAN001082_RS46265;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46265;product=RtT sRNA
NZ_APAH01000111.1	cmsearch	exon	2955	3088	.	-	.	ID=exon-CFSAN001082_RS46265-1;Parent=rna-CFSAN001082_RS46265;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46265;product=RtT sRNA
NZ_APAH01000111.1	RefSeq	gene	3138	3225	.	-	.	ID=gene-CFSAN001082_RS29815;Name=CFSAN001082_RS29815;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS29815;old_locus_tag=CFSAN001082_t05871
NZ_APAH01000111.1	tRNAscan-SE	tRNA	3138	3225	.	-	.	ID=rna-CFSAN001082_RS29815;Parent=gene-CFSAN001082_RS29815;anticodon=(pos:complement(3189..3191));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS29815;product=tRNA-Ser
NZ_APAH01000111.1	tRNAscan-SE	exon	3138	3225	.	-	.	ID=exon-CFSAN001082_RS29815-1;Parent=rna-CFSAN001082_RS29815;anticodon=(pos:complement(3189..3191));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS29815;product=tRNA-Ser
NZ_APAH01000111.1	RefSeq	gene	3462	4400	.	+	.	ID=gene-CFSAN001082_RS29825;Name=ghrA;gbkey=Gene;gene=ghrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29825;old_locus_tag=CFSAN001082_05829
NZ_APAH01000111.1	Protein Homology	CDS	3462	4400	.	+	0	ID=cds-WP_000402552.1;Parent=gene-CFSAN001082_RS29825;Dbxref=GenBank:WP_000402552.1;Name=WP_000402552.1;Ontology_term=GO:0016618,GO:0030267,GO:0051287;gbkey=CDS;gene=ghrA;go_function=hydroxypyruvate reductase [NAD(P)H] activity|0016618||IEA,glyoxylate reductase (NADPH) activity|0030267||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460106.1;locus_tag=CFSAN001082_RS29825;product=glyoxylate/hydroxypyruvate reductase GhrA;protein_id=WP_000402552.1;transl_table=11
NZ_APAH01000111.1	RefSeq	gene	4485	5222	.	+	.	ID=gene-CFSAN001082_RS29830;Name=CFSAN001082_RS29830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29830;old_locus_tag=CFSAN001082_05834
NZ_APAH01000111.1	Protein Homology	CDS	4485	5222	.	+	0	ID=cds-WP_000283643.1;Parent=gene-CFSAN001082_RS29830;Dbxref=GenBank:WP_000283643.1;Name=WP_000283643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460107.1;locus_tag=CFSAN001082_RS29830;product=phosphatase;protein_id=WP_000283643.1;transl_table=11
NZ_APAH01000111.1	RefSeq	gene	5246	5800	.	+	.	ID=gene-CFSAN001082_RS29835;Name=CFSAN001082_RS29835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29835;old_locus_tag=CFSAN001082_05839
NZ_APAH01000111.1	Protein Homology	CDS	5246	5800	.	+	0	ID=cds-WP_001001883.1;Parent=gene-CFSAN001082_RS29835;Dbxref=GenBank:WP_001001883.1;Name=WP_001001883.1;Ontology_term=GO:0061077;gbkey=CDS;go_process=chaperone-mediated protein folding|0061077||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460108.1;locus_tag=CFSAN001082_RS29835;product=TorD/DmsD family molecular chaperone;protein_id=WP_001001883.1;transl_table=11
NZ_APAH01000111.1	RefSeq	gene	5901	6383	.	+	.	ID=gene-CFSAN001082_RS29840;Name=CFSAN001082_RS29840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29840;old_locus_tag=CFSAN001082_05844
NZ_APAH01000111.1	Protein Homology	CDS	5901	6383	.	+	0	ID=cds-WP_001546652.1;Parent=gene-CFSAN001082_RS29840;Dbxref=GenBank:WP_001546652.1;Name=WP_001546652.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001675581.1;locus_tag=CFSAN001082_RS29840;product=DUF1097 domain-containing protein;protein_id=WP_001546652.1;transl_table=11
NZ_APAH01000111.1	RefSeq	gene	6422	7255	.	-	.	ID=gene-CFSAN001082_RS29845;Name=csgG;gbkey=Gene;gene=csgG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29845;old_locus_tag=CFSAN001082_05849
NZ_APAH01000111.1	Protein Homology	CDS	6422	7255	.	-	0	ID=cds-WP_001137620.1;Parent=gene-CFSAN001082_RS29845;Dbxref=GenBank:WP_001137620.1;Name=WP_001137620.1;gbkey=CDS;gene=csgG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460110.1;locus_tag=CFSAN001082_RS29845;product=curli production assembly/transport protein CsgG;protein_id=WP_001137620.1;transl_table=11
NZ_APAH01000111.1	RefSeq	gene	7282	7698	.	-	.	ID=gene-CFSAN001082_RS29850;Name=csgF;gbkey=Gene;gene=csgF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29850;old_locus_tag=CFSAN001082_05854
NZ_APAH01000111.1	Protein Homology	CDS	7282	7698	.	-	0	ID=cds-WP_001264073.1;Parent=gene-CFSAN001082_RS29850;Dbxref=GenBank:WP_001264073.1;Name=WP_001264073.1;gbkey=CDS;gene=csgF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460111.1;locus_tag=CFSAN001082_RS29850;product=curli production assembly/transport protein CsgF;protein_id=WP_001264073.1;transl_table=11
NZ_APAH01000111.1	RefSeq	gene	7725	8120	.	-	.	ID=gene-CFSAN001082_RS29855;Name=csgE;gbkey=Gene;gene=csgE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29855;old_locus_tag=CFSAN001082_05859
NZ_APAH01000111.1	Protein Homology	CDS	7725	8120	.	-	0	ID=cds-WP_000833307.1;Parent=gene-CFSAN001082_RS29855;Dbxref=GenBank:WP_000833307.1;Name=WP_000833307.1;gbkey=CDS;gene=csgE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460112.1;locus_tag=CFSAN001082_RS29855;product=curli production assembly/transport protein CsgE;protein_id=WP_000833307.1;transl_table=11
NZ_APAH01000111.1	RefSeq	gene	8125	8775	.	-	.	ID=gene-CFSAN001082_RS29860;Name=csgD;gbkey=Gene;gene=csgD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29860;old_locus_tag=CFSAN001082_05864
NZ_APAH01000111.1	Protein Homology	CDS	8125	8775	.	-	0	ID=cds-WP_000481517.1;Parent=gene-CFSAN001082_RS29860;Dbxref=GenBank:WP_000481517.1;Name=WP_000481517.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=csgD;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460113.1;locus_tag=CFSAN001082_RS29860;product=biofilm master transcriptional regulator CsgD;protein_id=WP_000481517.1;transl_table=11
##sequence-region NZ_APAH01000112.1 1 305
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000112.1	RefSeq	region	1	305	.	+	.	ID=NZ_APAH01000112.1:1..305;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000112.1	RefSeq	pseudogene	1	190	.	-	.	ID=gene-CFSAN001082_RS47750;Name=CFSAN001082_RS47750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47750;old_locus_tag=CFSAN001082_05871;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000112.1	Protein Homology	CDS	1	190	.	-	0	ID=cds-CFSAN001082_RS47750;Parent=gene-CFSAN001082_RS47750;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459293.1;locus_tag=CFSAN001082_RS47750;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000113.1 1 213
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000113.1	RefSeq	region	1	213	.	+	.	ID=NZ_APAH01000113.1:1..213;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000114.1 1 683
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000114.1	RefSeq	region	1	683	.	+	.	ID=NZ_APAH01000114.1:1..683;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000114.1	RefSeq	gene	342	683	.	-	.	ID=gene-CFSAN001082_RS29865;Name=CFSAN001082_RS29865;end_range=683,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29865;old_locus_tag=CFSAN001082_05876;partial=true
NZ_APAH01000114.1	Protein Homology	CDS	342	683	.	-	0	ID=cds-WP_023254009.1;Parent=gene-CFSAN001082_RS29865;Dbxref=GenBank:WP_023254009.1;Name=WP_023254009.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;end_range=683,.;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461788.1;locus_tag=CFSAN001082_RS29865;partial=true;product=helix-turn-helix domain-containing protein;protein_id=WP_023254009.1;transl_table=11
##sequence-region NZ_APAH01000115.1 1 325
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000115.1	RefSeq	region	1	325	.	+	.	ID=NZ_APAH01000115.1:1..325;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000115.1	RefSeq	pseudogene	1	325	.	-	.	ID=gene-CFSAN001082_RS29870;Name=CFSAN001082_RS29870;end_range=325,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS29870;old_locus_tag=CFSAN001082_05881;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000115.1	GeneMarkS-2+	CDS	1	325	.	-	2	ID=cds-CFSAN001082_RS29870;Parent=gene-CFSAN001082_RS29870;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=325,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS29870;partial=true;product=glycosyltransferase family 1 protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000116.1 1 20706
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000116.1	RefSeq	region	1	20706	.	+	.	ID=NZ_APAH01000116.1:1..20706;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000116.1	RefSeq	gene	22	252	.	+	.	ID=gene-CFSAN001082_RS29875;Name=CFSAN001082_RS29875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29875;old_locus_tag=CFSAN001082_05886
NZ_APAH01000116.1	Protein Homology	CDS	22	252	.	+	0	ID=cds-WP_001537894.1;Parent=gene-CFSAN001082_RS29875;Dbxref=GenBank:WP_001537894.1;Name=WP_001537894.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460562.1;locus_tag=CFSAN001082_RS29875;product=YncJ family protein;protein_id=WP_001537894.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	253	2217	.	-	.	ID=gene-CFSAN001082_RS29880;Name=CFSAN001082_RS29880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29880;old_locus_tag=CFSAN001082_05891
NZ_APAH01000116.1	Protein Homology	CDS	253	2217	.	-	0	ID=cds-WP_023254011.1;Parent=gene-CFSAN001082_RS29880;Dbxref=GenBank:WP_023254011.1;Name=WP_023254011.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460563.1;locus_tag=CFSAN001082_RS29880;product=peptidase U32 family protein;protein_id=WP_023254011.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	2296	2832	.	-	.	ID=gene-CFSAN001082_RS29885;Name=CFSAN001082_RS29885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29885;old_locus_tag=CFSAN001082_05896
NZ_APAH01000116.1	Protein Homology	CDS	2296	2832	.	-	0	ID=cds-WP_000369543.1;Parent=gene-CFSAN001082_RS29885;Dbxref=GenBank:WP_000369543.1;Name=WP_000369543.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460564.1;locus_tag=CFSAN001082_RS29885;product=helix-turn-helix domain-containing protein;protein_id=WP_000369543.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	2924	4102	.	+	.	ID=gene-CFSAN001082_RS29890;Name=CFSAN001082_RS29890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29890;old_locus_tag=CFSAN001082_05901
NZ_APAH01000116.1	Protein Homology	CDS	2924	4102	.	+	0	ID=cds-WP_023254012.1;Parent=gene-CFSAN001082_RS29890;Dbxref=GenBank:WP_023254012.1;Name=WP_023254012.1;Ontology_term=GO:0042919,GO:0042925,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=benzoate transmembrane transporter activity|0042925||IEA;go_process=benzoate transport|0042919||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460565.1;locus_tag=CFSAN001082_RS29890;product=benzoate/H(+) symporter BenE family transporter;protein_id=WP_023254012.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	4156	4824	.	-	.	ID=gene-CFSAN001082_RS29895;Name=CFSAN001082_RS29895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29895;old_locus_tag=CFSAN001082_05906
NZ_APAH01000116.1	Protein Homology	CDS	4156	4824	.	-	0	ID=cds-WP_001259025.1;Parent=gene-CFSAN001082_RS29895;Dbxref=GenBank:WP_001259025.1;Name=WP_001259025.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460566.1;locus_tag=CFSAN001082_RS29895;product=DUF3313 domain-containing protein;protein_id=WP_001259025.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	4980	5576	.	-	.	ID=gene-CFSAN001082_RS29900;Name=tehB;gbkey=Gene;gene=tehB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29900;old_locus_tag=CFSAN001082_05911
NZ_APAH01000116.1	Protein Homology	CDS	4980	5576	.	-	0	ID=cds-WP_000218280.1;Parent=gene-CFSAN001082_RS29900;Dbxref=GenBank:WP_000218280.1;Name=WP_000218280.1;Ontology_term=GO:0046690,GO:0008757;gbkey=CDS;gene=tehB;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=response to tellurium ion|0046690||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460567.1;locus_tag=CFSAN001082_RS29900;product=tellurite resistance methyltransferase TehB;protein_id=WP_000218280.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	5563	6576	.	-	.	ID=gene-CFSAN001082_RS29905;Name=tehA;gbkey=Gene;gene=tehA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29905;old_locus_tag=CFSAN001082_05916
NZ_APAH01000116.1	Protein Homology	CDS	5563	6576	.	-	0	ID=cds-WP_001243994.1;Parent=gene-CFSAN001082_RS29905;Dbxref=GenBank:WP_001243994.1;Name=WP_001243994.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=tehA;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460568.1;locus_tag=CFSAN001082_RS29905;product=dicarboxylate transporter/tellurite-resistance protein TehA;protein_id=WP_001243994.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	6683	7663	.	+	.	ID=gene-CFSAN001082_RS29910;Name=ydcK;gbkey=Gene;gene=ydcK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29910;old_locus_tag=CFSAN001082_05921
NZ_APAH01000116.1	Protein Homology	CDS	6683	7663	.	+	0	ID=cds-WP_023254013.1;Parent=gene-CFSAN001082_RS29910;Dbxref=GenBank:WP_023254013.1;Name=WP_023254013.1;gbkey=CDS;gene=ydcK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460569.1;locus_tag=CFSAN001082_RS29910;product=YdcK family protein;protein_id=WP_023254013.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	7660	8199	.	-	.	ID=gene-CFSAN001082_RS29915;Name=rimL;gbkey=Gene;gene=rimL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29915;old_locus_tag=CFSAN001082_05926
NZ_APAH01000116.1	Protein Homology	CDS	7660	8199	.	-	0	ID=cds-WP_023206029.1;Parent=gene-CFSAN001082_RS29915;Dbxref=GenBank:WP_023206029.1;Name=WP_023206029.1;gbkey=CDS;gene=rimL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460570.1;locus_tag=CFSAN001082_RS29915;product=50S ribosomal protein L7/L12-serine acetyltransferase;protein_id=WP_023206029.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	8416	9534	.	+	.	ID=gene-CFSAN001082_RS29920;Name=CFSAN001082_RS29920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29920;old_locus_tag=CFSAN001082_05931
NZ_APAH01000116.1	Protein Homology	CDS	8416	9534	.	+	0	ID=cds-WP_000144621.1;Parent=gene-CFSAN001082_RS29920;Dbxref=GenBank:WP_000144621.1;Name=WP_000144621.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460571.1;locus_tag=CFSAN001082_RS29920;product=M42 family metallopeptidase;protein_id=WP_000144621.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	9531	9812	.	+	.	ID=gene-CFSAN001082_RS29925;Name=sgcB;gbkey=Gene;gene=sgcB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29925;old_locus_tag=CFSAN001082_05936
NZ_APAH01000116.1	Protein Homology	CDS	9531	9812	.	+	0	ID=cds-WP_000976132.1;Parent=gene-CFSAN001082_RS29925;Dbxref=GenBank:WP_000976132.1;Name=WP_000976132.1;gbkey=CDS;gene=sgcB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460572.1;locus_tag=CFSAN001082_RS29925;product=PTS sugar transporter subunit IIB SgcB;protein_id=WP_000976132.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	9823	11136	.	+	.	ID=gene-CFSAN001082_RS29930;Name=sgcC;gbkey=Gene;gene=sgcC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29930;old_locus_tag=CFSAN001082_05941
NZ_APAH01000116.1	Protein Homology	CDS	9823	11136	.	+	0	ID=cds-WP_000460835.1;Parent=gene-CFSAN001082_RS29930;Dbxref=GenBank:WP_000460835.1;Name=WP_000460835.1;gbkey=CDS;gene=sgcC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460573.1;locus_tag=CFSAN001082_RS29930;product=PTS sugar transporter subunit IIC SgcC;protein_id=WP_000460835.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	11150	11956	.	+	.	ID=gene-CFSAN001082_RS29935;Name=sgcQ;gbkey=Gene;gene=sgcQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29935;old_locus_tag=CFSAN001082_05946
NZ_APAH01000116.1	Protein Homology	CDS	11150	11956	.	+	0	ID=cds-WP_000118615.1;Parent=gene-CFSAN001082_RS29935;Dbxref=GenBank:WP_000118615.1;Name=WP_000118615.1;gbkey=CDS;gene=sgcQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460574.1;locus_tag=CFSAN001082_RS29935;product=BtpA family protein SgcQ;protein_id=WP_000118615.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	12088	12525	.	+	.	ID=gene-CFSAN001082_RS29940;Name=sgcA;gbkey=Gene;gene=sgcA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29940;old_locus_tag=CFSAN001082_05951
NZ_APAH01000116.1	Protein Homology	CDS	12088	12525	.	+	0	ID=cds-WP_000606454.1;Parent=gene-CFSAN001082_RS29940;Dbxref=GenBank:WP_000606454.1;Name=WP_000606454.1;gbkey=CDS;gene=sgcA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460575.1;locus_tag=CFSAN001082_RS29940;product=SgcA family PTS sugar transporter subunit IIA;protein_id=WP_000606454.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	12537	13169	.	+	.	ID=gene-CFSAN001082_RS29945;Name=CFSAN001082_RS29945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29945;old_locus_tag=CFSAN001082_05956
NZ_APAH01000116.1	Protein Homology	CDS	12537	13169	.	+	0	ID=cds-WP_023218172.1;Parent=gene-CFSAN001082_RS29945;Dbxref=GenBank:WP_023218172.1;Name=WP_023218172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460576.1;locus_tag=CFSAN001082_RS29945;product=ribulose-phosphate 3 epimerase family protein;protein_id=WP_023218172.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	13185	13976	.	+	.	ID=gene-CFSAN001082_RS29950;Name=CFSAN001082_RS29950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29950;old_locus_tag=CFSAN001082_05961
NZ_APAH01000116.1	Protein Homology	CDS	13185	13976	.	+	0	ID=cds-WP_001670738.1;Parent=gene-CFSAN001082_RS29950;Dbxref=GenBank:WP_001670738.1;Name=WP_001670738.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460577.1;locus_tag=CFSAN001082_RS29950;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_001670738.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	13976	14413	.	+	.	ID=gene-CFSAN001082_RS29955;Name=aac(6');gbkey=Gene;gene=aac(6');gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29955;old_locus_tag=CFSAN001082_05966
NZ_APAH01000116.1	Protein Homology	CDS	13976	14413	.	+	0	ID=cds-WP_001649384.1;Parent=gene-CFSAN001082_RS29955;Dbxref=GenBank:WP_001649384.1;Name=WP_001649384.1;gbkey=CDS;gene=aac(6');inference=COORDINATES: similar to AA sequence:RefSeq:NP_460578.1;locus_tag=CFSAN001082_RS29955;product=cryptic aminoglycoside N-acetyltransferase AAC(6')-Iy/Iaa;protein_id=WP_001649384.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	14554	15807	.	-	.	ID=gene-CFSAN001082_RS29960;Name=CFSAN001082_RS29960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29960;old_locus_tag=CFSAN001082_05971
NZ_APAH01000116.1	Protein Homology	CDS	14554	15807	.	-	0	ID=cds-WP_000067287.1;Parent=gene-CFSAN001082_RS29960;Dbxref=GenBank:WP_000067287.1;Name=WP_000067287.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000067287.1;locus_tag=CFSAN001082_RS29960;product=enolase C-terminal domain-like protein;protein_id=WP_000067287.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	16145	16912	.	+	.	ID=gene-CFSAN001082_RS29965;Name=CFSAN001082_RS29965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29965;old_locus_tag=CFSAN001082_05976
NZ_APAH01000116.1	Protein Homology	CDS	16145	16912	.	+	0	ID=cds-WP_000125687.1;Parent=gene-CFSAN001082_RS29965;Dbxref=GenBank:WP_000125687.1;Name=WP_000125687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006894239.1;locus_tag=CFSAN001082_RS29965;product=SDR family oxidoreductase;protein_id=WP_000125687.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	16996	18357	.	+	.	ID=gene-CFSAN001082_RS29970;Name=CFSAN001082_RS29970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29970;old_locus_tag=CFSAN001082_05981
NZ_APAH01000116.1	Protein Homology	CDS	16996	18357	.	+	0	ID=cds-WP_000648129.1;Parent=gene-CFSAN001082_RS29970;Dbxref=GenBank:WP_000648129.1;Name=WP_000648129.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000648132.1;locus_tag=CFSAN001082_RS29970;product=MFS transporter;protein_id=WP_000648129.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	18326	19417	.	+	.	ID=gene-CFSAN001082_RS29975;Name=idnD;gbkey=Gene;gene=idnD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29975;old_locus_tag=CFSAN001082_05986
NZ_APAH01000116.1	Protein Homology	CDS	18326	19417	.	+	0	ID=cds-WP_049884996.1;Parent=gene-CFSAN001082_RS29975;Dbxref=GenBank:WP_049884996.1;Name=WP_049884996.1;gbkey=CDS;gene=idnD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001131634.1;locus_tag=CFSAN001082_RS29975;product=L-idonate 5-dehydrogenase;protein_id=WP_049884996.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	19508	20227	.	+	.	ID=gene-CFSAN001082_RS29980;Name=CFSAN001082_RS29980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29980;old_locus_tag=CFSAN001082_05991
NZ_APAH01000116.1	Protein Homology	CDS	19508	20227	.	+	0	ID=cds-WP_000023780.1;Parent=gene-CFSAN001082_RS29980;Dbxref=GenBank:WP_000023780.1;Name=WP_000023780.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000023780.1;locus_tag=CFSAN001082_RS29980;product=FadR/GntR family transcriptional regulator;protein_id=WP_000023780.1;transl_table=11
NZ_APAH01000116.1	RefSeq	gene	20405	20706	.	-	.	ID=gene-CFSAN001082_RS29985;Name=CFSAN001082_RS29985;end_range=20706,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29985;old_locus_tag=CFSAN001082_05996;partial=true
NZ_APAH01000116.1	Protein Homology	CDS	20405	20706	.	-	2	ID=cds-WP_023254015.1;Parent=gene-CFSAN001082_RS29985;Dbxref=GenBank:WP_023254015.1;Name=WP_023254015.1;end_range=20706,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460580.1;locus_tag=CFSAN001082_RS29985;partial=true;product=YceI family protein;protein_id=WP_023254015.1;transl_table=11
##sequence-region NZ_APAH01000117.1 1 4755
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000117.1	RefSeq	region	1	4755	.	+	.	ID=NZ_APAH01000117.1:1..4755;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000117.1	RefSeq	gene	318	1175	.	+	.	ID=gene-CFSAN001082_RS29990;Name=CFSAN001082_RS29990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29990;old_locus_tag=CFSAN001082_06001
NZ_APAH01000117.1	Protein Homology	CDS	318	1175	.	+	0	ID=cds-WP_001278062.1;Parent=gene-CFSAN001082_RS29990;Dbxref=GenBank:WP_001278062.1;Name=WP_001278062.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462658.4;locus_tag=CFSAN001082_RS29990;product=winged helix-turn-helix domain-containing protein;protein_id=WP_001278062.1;transl_table=11
NZ_APAH01000117.1	RefSeq	gene	1186	1650	.	+	.	ID=gene-CFSAN001082_RS29995;Name=CFSAN001082_RS29995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS29995;old_locus_tag=CFSAN001082_06006
NZ_APAH01000117.1	Protein Homology	CDS	1186	1650	.	+	0	ID=cds-WP_001521985.1;Parent=gene-CFSAN001082_RS29995;Dbxref=GenBank:WP_001521985.1;Name=WP_001521985.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462657.1;locus_tag=CFSAN001082_RS29995;product=hypothetical protein;protein_id=WP_001521985.1;transl_table=11
NZ_APAH01000117.1	RefSeq	gene	1745	4612	.	-	.	ID=gene-CFSAN001082_RS30000;Name=misL;gbkey=Gene;gene=misL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30000;old_locus_tag=CFSAN001082_06011
NZ_APAH01000117.1	Protein Homology	CDS	1745	4612	.	-	0	ID=cds-WP_023254016.1;Parent=gene-CFSAN001082_RS30000;Dbxref=GenBank:WP_023254016.1;Name=WP_023254016.1;gbkey=CDS;gene=misL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462656.1;locus_tag=CFSAN001082_RS30000;product=intestinal colonization autotransporter adhesin MisL;protein_id=WP_023254016.1;transl_table=11
NZ_APAH01000117.1	RefSeq	pseudogene	4687	4755	.	-	.	ID=gene-CFSAN001082_RS48180;Name=CFSAN001082_RS48180;end_range=4755,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48180;partial=true;pseudo=true
NZ_APAH01000117.1	Protein Homology	CDS	4687	4755	.	-	0	ID=cds-CFSAN001082_RS48180;Parent=gene-CFSAN001082_RS48180;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=4755,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462655.1;locus_tag=CFSAN001082_RS48180;partial=true;product=helix-turn-helix transcriptional regulator;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000118.1 1 6685
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000118.1	RefSeq	region	1	6685	.	+	.	ID=NZ_APAH01000118.1:1..6685;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000118.1	RefSeq	gene	1	736	.	+	.	ID=gene-CFSAN001082_RS30005;Name=prpB;gbkey=Gene;gene=prpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30005;old_locus_tag=CFSAN001082_06016;partial=true;start_range=.,1
NZ_APAH01000118.1	Protein Homology	CDS	1	736	.	+	1	ID=cds-WP_023254017.1;Parent=gene-CFSAN001082_RS30005;Dbxref=GenBank:WP_023254017.1;Name=WP_023254017.1;Ontology_term=GO:0019629,GO:0046421;gbkey=CDS;gene=prpB;go_function=methylisocitrate lyase activity|0046421||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459363.1;locus_tag=CFSAN001082_RS30005;partial=true;product=methylisocitrate lyase;protein_id=WP_023254017.1;start_range=.,1;transl_table=11
NZ_APAH01000118.1	RefSeq	gene	859	2028	.	+	.	ID=gene-CFSAN001082_RS30010;Name=prpC;gbkey=Gene;gene=prpC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30010;old_locus_tag=CFSAN001082_06021
NZ_APAH01000118.1	Protein Homology	CDS	859	2028	.	+	0	ID=cds-WP_000132749.1;Parent=gene-CFSAN001082_RS30010;Dbxref=GenBank:WP_000132749.1;Name=WP_000132749.1;Ontology_term=GO:0019679,GO:0004108,GO:0050440;gbkey=CDS;gene=prpC;go_function=citrate (Si)-synthase activity|0004108||IEA,2-methylcitrate synthase activity|0050440||IEA;go_process=propionate metabolic process%2C methylcitrate cycle|0019679||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459364.1;locus_tag=CFSAN001082_RS30010;product=bifunctional 2-methylcitrate synthase/citrate synthase;protein_id=WP_000132749.1;transl_table=11
NZ_APAH01000118.1	RefSeq	gene	2068	3519	.	+	.	ID=gene-CFSAN001082_RS30015;Name=CFSAN001082_RS30015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30015;old_locus_tag=CFSAN001082_06026
NZ_APAH01000118.1	Protein Homology	CDS	2068	3519	.	+	0	ID=cds-WP_023254018.1;Parent=gene-CFSAN001082_RS30015;Dbxref=GenBank:WP_023254018.1;Name=WP_023254018.1;Ontology_term=GO:0019679,GO:0047547,GO:0051537;gbkey=CDS;go_function=2-methylcitrate dehydratase activity|0047547||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=propionate metabolic process%2C methylcitrate cycle|0019679||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459365.1;locus_tag=CFSAN001082_RS30015;product=bifunctional 2-methylcitrate dehydratase/aconitate hydratase;protein_id=WP_023254018.1;transl_table=11
NZ_APAH01000118.1	RefSeq	gene	3560	5446	.	+	.	ID=gene-CFSAN001082_RS30020;Name=prpE;gbkey=Gene;gene=prpE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30020;old_locus_tag=CFSAN001082_06031
NZ_APAH01000118.1	Protein Homology	CDS	3560	5446	.	+	0	ID=cds-WP_023254019.1;Parent=gene-CFSAN001082_RS30020;Dbxref=GenBank:WP_023254019.1;Name=WP_023254019.1;Ontology_term=GO:0019629,GO:0050218;gbkey=CDS;gene=prpE;go_function=propionate-CoA ligase activity|0050218||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459366.1;locus_tag=CFSAN001082_RS30020;product=propionate--CoA ligase;protein_id=WP_023254019.1;transl_table=11
NZ_APAH01000118.1	RefSeq	gene	5550	6524	.	-	.	ID=gene-CFSAN001082_RS30025;Name=hemB;gbkey=Gene;gene=hemB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30025;old_locus_tag=CFSAN001082_06036
NZ_APAH01000118.1	Protein Homology	CDS	5550	6524	.	-	0	ID=cds-WP_000130724.1;Parent=gene-CFSAN001082_RS30025;Dbxref=GenBank:WP_000130724.1;Name=WP_000130724.1;Ontology_term=GO:0033014,GO:0004655;gbkey=CDS;gene=hemB;go_function=porphobilinogen synthase activity|0004655||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459367.1;locus_tag=CFSAN001082_RS30025;product=porphobilinogen synthase;protein_id=WP_000130724.1;transl_table=11
##sequence-region NZ_APAH01000119.1 1 9849
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000119.1	RefSeq	region	1	9849	.	+	.	ID=NZ_APAH01000119.1:1..9849;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000119.1	RefSeq	gene	1	336	.	+	.	ID=gene-CFSAN001082_RS48755;Name=CFSAN001082_RS48755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48755;partial=true;start_range=.,1
NZ_APAH01000119.1	Protein Homology	CDS	1	336	.	+	0	ID=cds-WP_024150256.1;Parent=gene-CFSAN001082_RS48755;Dbxref=GenBank:WP_024150256.1;Name=WP_024150256.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001727015.1;locus_tag=CFSAN001082_RS48755;partial=true;product=hypothetical protein;protein_id=WP_024150256.1;start_range=.,1;transl_table=11
NZ_APAH01000119.1	RefSeq	gene	384	1334	.	-	.	ID=gene-CFSAN001082_RS30030;Name=corA;gbkey=Gene;gene=corA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30030;old_locus_tag=CFSAN001082_06041
NZ_APAH01000119.1	Protein Homology	CDS	384	1334	.	-	0	ID=cds-WP_000947139.1;Parent=gene-CFSAN001082_RS30030;Dbxref=GenBank:WP_000947139.1;Name=WP_000947139.1;Ontology_term=GO:0006824,GO:0015693,GO:0015087,GO:0015095,GO:0016020;gbkey=CDS;gene=corA;go_component=membrane|0016020||IEA;go_function=cobalt ion transmembrane transporter activity|0015087||IEA,magnesium ion transmembrane transporter activity|0015095||IEA;go_process=cobalt ion transport|0006824||IEA,magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000947142.1;locus_tag=CFSAN001082_RS30030;product=magnesium/cobalt transporter CorA;protein_id=WP_000947139.1;transl_table=11
NZ_APAH01000119.1	RefSeq	gene	1490	1546	.	-	.	ID=gene-CFSAN001082_RS48760;Name=ysgD;gbkey=Gene;gene=ysgD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48760
NZ_APAH01000119.1	Protein Homology	CDS	1490	1546	.	-	0	ID=cds-WP_212723238.1;Parent=gene-CFSAN001082_RS48760;Dbxref=GenBank:WP_212723238.1;Name=WP_212723238.1;gbkey=CDS;gene=ysgD;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051213.1;locus_tag=CFSAN001082_RS48760;product=YsgD/CorL family protein;protein_id=WP_212723238.1;transl_table=11
NZ_APAH01000119.1	RefSeq	gene	1806	3968	.	-	.	ID=gene-CFSAN001082_RS30035;Name=uvrD;gbkey=Gene;gene=uvrD;gene_biotype=protein_coding;gene_synonym=mutU,recL;locus_tag=CFSAN001082_RS30035;old_locus_tag=CFSAN001082_06046
NZ_APAH01000119.1	Protein Homology	CDS	1806	3968	.	-	0	ID=cds-WP_000383432.1;Parent=gene-CFSAN001082_RS30035;Dbxref=GenBank:WP_000383432.1;Name=WP_000383432.1;Ontology_term=GO:0006260,GO:0003677,GO:0003678,GO:0005524,GO:0016787;gbkey=CDS;gene=uvrD;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462836.1;locus_tag=CFSAN001082_RS30035;product=DNA helicase II;protein_id=WP_000383432.1;transl_table=11
NZ_APAH01000119.1	RefSeq	gene	4103	4819	.	-	.	ID=gene-CFSAN001082_RS30040;Name=yigB;gbkey=Gene;gene=yigB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30040;old_locus_tag=CFSAN001082_06056
NZ_APAH01000119.1	Protein Homology	CDS	4103	4819	.	-	0	ID=cds-WP_001213560.1;Parent=gene-CFSAN001082_RS30040;Dbxref=GenBank:WP_001213560.1;Name=WP_001213560.1;gbkey=CDS;gene=yigB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462835.1;locus_tag=CFSAN001082_RS30040;product=5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB;protein_id=WP_001213560.1;transl_table=11
NZ_APAH01000119.1	RefSeq	gene	4819	5721	.	-	.	ID=gene-CFSAN001082_RS30045;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30045;old_locus_tag=CFSAN001082_06061
NZ_APAH01000119.1	Protein Homology	CDS	4819	5721	.	-	0	ID=cds-WP_000132877.1;Parent=gene-CFSAN001082_RS30045;Dbxref=GenBank:WP_000132877.1;Name=WP_000132877.1;Ontology_term=GO:0006310,GO:0007059,GO:0015074,GO:0051301,GO:0003677;gbkey=CDS;gene=xerC;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,chromosome segregation|0007059||IEA,DNA integration|0015074||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462834.1;locus_tag=CFSAN001082_RS30045;product=tyrosine recombinase XerC;protein_id=WP_000132877.1;transl_table=11
NZ_APAH01000119.1	RefSeq	gene	5718	6425	.	-	.	ID=gene-CFSAN001082_RS30050;Name=CFSAN001082_RS30050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30050;old_locus_tag=CFSAN001082_06066
NZ_APAH01000119.1	Protein Homology	CDS	5718	6425	.	-	0	ID=cds-WP_000812763.1;Parent=gene-CFSAN001082_RS30050;Dbxref=GenBank:WP_000812763.1;Name=WP_000812763.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462833.1;locus_tag=CFSAN001082_RS30050;product=DUF484 domain-containing protein;protein_id=WP_000812763.1;transl_table=11
NZ_APAH01000119.1	RefSeq	gene	6422	7246	.	-	.	ID=gene-CFSAN001082_RS30055;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30055;old_locus_tag=CFSAN001082_06071
NZ_APAH01000119.1	Protein Homology	CDS	6422	7246	.	-	0	ID=cds-WP_001160671.1;Parent=gene-CFSAN001082_RS30055;Dbxref=GenBank:WP_001160671.1;Name=WP_001160671.1;Ontology_term=GO:0009089,GO:0008837;gbkey=CDS;gene=dapF;go_function=diaminopimelate epimerase activity|0008837||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133314.1;locus_tag=CFSAN001082_RS30055;product=diaminopimelate epimerase;protein_id=WP_001160671.1;transl_table=11
NZ_APAH01000119.1	RefSeq	gene	7283	7486	.	-	.	ID=gene-CFSAN001082_RS30060;Name=lptM;gbkey=Gene;gene=lptM;gene_biotype=protein_coding;gene_synonym=yifL;locus_tag=CFSAN001082_RS30060;old_locus_tag=CFSAN001082_06076
NZ_APAH01000119.1	Protein Homology	CDS	7283	7486	.	-	0	ID=cds-WP_000799903.1;Parent=gene-CFSAN001082_RS30060;Dbxref=GenBank:WP_000799903.1;Name=WP_000799903.1;gbkey=CDS;gene=lptM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462831.1;locus_tag=CFSAN001082_RS30060;product=LPS translocon maturation chaperone LptM;protein_id=WP_000799903.1;transl_table=11
NZ_APAH01000119.1	RefSeq	gene	7672	7923	.	+	.	ID=gene-CFSAN001082_RS46705;Name=CFSAN001082_RS46705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46705
NZ_APAH01000119.1	GeneMarkS-2+	CDS	7672	7923	.	+	0	ID=cds-WP_001651122.1;Parent=gene-CFSAN001082_RS46705;Dbxref=GenBank:WP_001651122.1;Name=WP_001651122.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS46705;product=hypothetical protein;protein_id=WP_001651122.1;transl_table=11
NZ_APAH01000119.1	RefSeq	pseudogene	7893	8194	.	+	.	ID=gene-CFSAN001082_RS46710;Name=CFSAN001082_RS46710;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46710;partial=true;pseudo=true;start_range=.,7893
NZ_APAH01000119.1	Protein Homology	CDS	7893	8194	.	+	0	ID=cds-CFSAN001082_RS46710;Parent=gene-CFSAN001082_RS46710;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001200019.1;locus_tag=CFSAN001082_RS46710;partial=true;product=hypothetical protein;pseudo=true;start_range=.,7893;transl_table=11
NZ_APAH01000119.1	RefSeq	gene	8182	8571	.	+	.	ID=gene-CFSAN001082_RS30065;Name=CFSAN001082_RS30065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30065;old_locus_tag=CFSAN001082_06086
NZ_APAH01000119.1	Protein Homology	CDS	8182	8571	.	+	0	ID=cds-WP_017442077.1;Parent=gene-CFSAN001082_RS30065;Dbxref=GenBank:WP_017442077.1;Name=WP_017442077.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462830.1;locus_tag=CFSAN001082_RS30065;product=DUF3021 family protein;protein_id=WP_017442077.1;transl_table=11
NZ_APAH01000119.1	RefSeq	gene	8641	8961	.	+	.	ID=gene-CFSAN001082_RS30070;Name=cyaY;gbkey=Gene;gene=cyaY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30070;old_locus_tag=CFSAN001082_06091
NZ_APAH01000119.1	Protein Homology	CDS	8641	8961	.	+	0	ID=cds-WP_023254020.1;Parent=gene-CFSAN001082_RS30070;Dbxref=GenBank:WP_023254020.1;Name=WP_023254020.1;Ontology_term=GO:0016226,GO:0005506;gbkey=CDS;gene=cyaY;go_function=iron ion binding|0005506||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000999950.1;locus_tag=CFSAN001082_RS30070;product=iron donor protein CyaY;protein_id=WP_023254020.1;transl_table=11
NZ_APAH01000119.1	RefSeq	gene	9032	9394	.	-	.	ID=gene-CFSAN001082_RS0123110;Name=CFSAN001082_RS0123110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123110
NZ_APAH01000119.1	Protein Homology	CDS	9032	9394	.	-	0	ID=cds-WP_010989084.1;Parent=gene-CFSAN001082_RS0123110;Dbxref=GenBank:WP_010989084.1;Name=WP_010989084.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462828.1;locus_tag=CFSAN001082_RS0123110;product=hypothetical protein;protein_id=WP_010989084.1;transl_table=11
NZ_APAH01000119.1	RefSeq	gene	9406	9849	.	-	.	ID=gene-CFSAN001082_RS30075;Name=CFSAN001082_RS30075;end_range=9849,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30075;old_locus_tag=CFSAN001082_06096;partial=true
NZ_APAH01000119.1	Protein Homology	CDS	9406	9849	.	-	0	ID=cds-WP_049884997.1;Parent=gene-CFSAN001082_RS30075;Dbxref=GenBank:WP_049884997.1;Name=WP_049884997.1;end_range=9849,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462827.1;locus_tag=CFSAN001082_RS30075;partial=true;product=STM3941 family protein;protein_id=WP_049884997.1;transl_table=11
##sequence-region NZ_APAH01000120.1 1 2185
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000120.1	RefSeq	region	1	2185	.	+	.	ID=NZ_APAH01000120.1:1..2185;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000120.1	RefSeq	gene	83	349	.	-	.	ID=gene-CFSAN001082_RS30080;Name=minE;gbkey=Gene;gene=minE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30080;old_locus_tag=CFSAN001082_06101
NZ_APAH01000120.1	Protein Homology	CDS	83	349	.	-	0	ID=cds-WP_001185666.1;Parent=gene-CFSAN001082_RS30080;Dbxref=GenBank:WP_001185666.1;Name=WP_001185666.1;Ontology_term=GO:0032955;gbkey=CDS;gene=minE;go_process=regulation of division septum assembly|0032955||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460772.1;locus_tag=CFSAN001082_RS30080;product=cell division topological specificity factor MinE;protein_id=WP_001185666.1;transl_table=11
NZ_APAH01000120.1	RefSeq	gene	353	1165	.	-	.	ID=gene-CFSAN001082_RS30085;Name=minD;gbkey=Gene;gene=minD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30085;old_locus_tag=CFSAN001082_06106
NZ_APAH01000120.1	Protein Homology	CDS	353	1165	.	-	0	ID=cds-WP_000101047.1;Parent=gene-CFSAN001082_RS30085;Dbxref=GenBank:WP_000101047.1;Name=WP_000101047.1;gbkey=CDS;gene=minD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020801817.1;locus_tag=CFSAN001082_RS30085;product=septum site-determining protein MinD;protein_id=WP_000101047.1;transl_table=11
NZ_APAH01000120.1	RefSeq	gene	1189	1896	.	-	.	ID=gene-CFSAN001082_RS30090;Name=minC;gbkey=Gene;gene=minC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30090;old_locus_tag=CFSAN001082_06111
NZ_APAH01000120.1	Protein Homology	CDS	1189	1896	.	-	0	ID=cds-WP_020438154.1;Parent=gene-CFSAN001082_RS30090;Dbxref=GenBank:WP_020438154.1;Name=WP_020438154.1;Ontology_term=GO:0000918,GO:1901891,GO:0004857;gbkey=CDS;gene=minC;go_function=enzyme inhibitor activity|0004857||IEA;go_process=division septum site selection|0000918||IEA,regulation of cell septum assembly|1901891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460770.1;locus_tag=CFSAN001082_RS30090;product=septum site-determining protein MinC;protein_id=WP_020438154.1;transl_table=11
NZ_APAH01000120.1	RefSeq	gene	2022	2185	.	+	.	ID=gene-CFSAN001082_RS30095;Name=CFSAN001082_RS30095;end_range=2185,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30095;old_locus_tag=CFSAN001082_06116;partial=true
NZ_APAH01000120.1	Protein Homology	CDS	2022	2185	.	+	0	ID=cds-WP_023254022.1;Parent=gene-CFSAN001082_RS30095;Dbxref=GenBank:WP_023254022.1;Name=WP_023254022.1;end_range=2185,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309701.2;locus_tag=CFSAN001082_RS30095;partial=true;product=YcgL domain-containing protein;protein_id=WP_023254022.1;transl_table=11
##sequence-region NZ_APAH01000121.1 1 12943
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000121.1	RefSeq	region	1	12943	.	+	.	ID=NZ_APAH01000121.1:1..12943;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000121.1	RefSeq	gene	1	2258	.	+	.	ID=gene-CFSAN001082_RS30100;Name=CFSAN001082_RS30100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30100;old_locus_tag=CFSAN001082_06121;partial=true;start_range=.,1
NZ_APAH01000121.1	Protein Homology	CDS	1	2258	.	+	2	ID=cds-WP_023254023.1;Parent=gene-CFSAN001082_RS30100;Dbxref=GenBank:WP_023254023.1;Name=WP_023254023.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460357.1;locus_tag=CFSAN001082_RS30100;partial=true;product=two component system sensor kinase;protein_id=WP_023254023.1;start_range=.,1;transl_table=11
NZ_APAH01000121.1	RefSeq	gene	2289	2927	.	+	.	ID=gene-CFSAN001082_RS30105;Name=CFSAN001082_RS30105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30105;old_locus_tag=CFSAN001082_06126
NZ_APAH01000121.1	Protein Homology	CDS	2289	2927	.	+	0	ID=cds-WP_000666334.1;Parent=gene-CFSAN001082_RS30105;Dbxref=GenBank:WP_000666334.1;Name=WP_000666334.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460356.1;locus_tag=CFSAN001082_RS30105;product=two component system response regulator;protein_id=WP_000666334.1;transl_table=11
NZ_APAH01000121.1	RefSeq	gene	3106	3834	.	+	.	ID=gene-CFSAN001082_RS30110;Name=CFSAN001082_RS30110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30110;old_locus_tag=CFSAN001082_06131
NZ_APAH01000121.1	Protein Homology	CDS	3106	3834	.	+	0	ID=cds-WP_000122318.1;Parent=gene-CFSAN001082_RS30110;Dbxref=GenBank:WP_000122318.1;Name=WP_000122318.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460355.1;locus_tag=CFSAN001082_RS30110;product=MerR family transcriptional regulator;protein_id=WP_000122318.1;transl_table=11
NZ_APAH01000121.1	RefSeq	gene	4006	4965	.	+	.	ID=gene-CFSAN001082_RS30115;Name=mlrB;gbkey=Gene;gene=mlrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30115;old_locus_tag=CFSAN001082_06136
NZ_APAH01000121.1	Protein Homology	CDS	4006	4965	.	+	0	ID=cds-WP_023254024.1;Parent=gene-CFSAN001082_RS30115;Dbxref=GenBank:WP_023254024.1;Name=WP_023254024.1;gbkey=CDS;gene=mlrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460354.1;locus_tag=CFSAN001082_RS30115;product=transcriptional regulator MlrB;protein_id=WP_023254024.1;transl_table=11
NZ_APAH01000121.1	RefSeq	gene	5061	5273	.	-	.	ID=gene-CFSAN001082_RS30120;Name=fumD;gbkey=Gene;gene=fumD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30120;old_locus_tag=CFSAN001082_06141
NZ_APAH01000121.1	Protein Homology	CDS	5061	5273	.	-	0	ID=cds-WP_000165779.1;Parent=gene-CFSAN001082_RS30120;Dbxref=GenBank:WP_000165779.1;Name=WP_000165779.1;gbkey=CDS;gene=fumD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460353.1;locus_tag=CFSAN001082_RS30120;product=fumarate hydratase FumD;protein_id=WP_000165779.1;transl_table=11
NZ_APAH01000121.1	RefSeq	gene	5371	5991	.	-	.	ID=gene-CFSAN001082_RS30125;Name=ttrR;gbkey=Gene;gene=ttrR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30125;old_locus_tag=CFSAN001082_06146
NZ_APAH01000121.1	Protein Homology	CDS	5371	5991	.	-	0	ID=cds-WP_000190927.1;Parent=gene-CFSAN001082_RS30125;Dbxref=GenBank:WP_000190927.1;Name=WP_000190927.1;gbkey=CDS;gene=ttrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460352.3;locus_tag=CFSAN001082_RS30125;product=tetrathionate respiration response regulator TtrR;protein_id=WP_000190927.1;transl_table=11
NZ_APAH01000121.1	RefSeq	gene	5966	7744	.	-	.	ID=gene-CFSAN001082_RS30130;Name=ttrS;gbkey=Gene;gene=ttrS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30130;old_locus_tag=CFSAN001082_06151
NZ_APAH01000121.1	Protein Homology	CDS	5966	7744	.	-	0	ID=cds-WP_077911132.1;Parent=gene-CFSAN001082_RS30130;Dbxref=GenBank:WP_077911132.1;Name=WP_077911132.1;gbkey=CDS;gene=ttrS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460351.1;locus_tag=CFSAN001082_RS30130;product=tetrathionate respiration histidine kinase TtrS;protein_id=WP_077911132.1;transl_table=11
NZ_APAH01000121.1	RefSeq	gene	7926	8660	.	+	.	ID=gene-CFSAN001082_RS30135;Name=ttrB;gbkey=Gene;gene=ttrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30135;old_locus_tag=CFSAN001082_06156
NZ_APAH01000121.1	Protein Homology	CDS	7926	8660	.	+	0	ID=cds-WP_001527654.1;Parent=gene-CFSAN001082_RS30135;Dbxref=GenBank:WP_001527654.1;Name=WP_001527654.1;gbkey=CDS;gene=ttrB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001518945.1;locus_tag=CFSAN001082_RS30135;product=tetrathionate reductase subunit TtrB;protein_id=WP_001527654.1;transl_table=11
NZ_APAH01000121.1	RefSeq	gene	8661	9683	.	+	.	ID=gene-CFSAN001082_RS30140;Name=ttrC;gbkey=Gene;gene=ttrC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30140;old_locus_tag=CFSAN001082_06161
NZ_APAH01000121.1	Protein Homology	CDS	8661	9683	.	+	0	ID=cds-WP_023254026.1;Parent=gene-CFSAN001082_RS30140;Dbxref=GenBank:WP_023254026.1;Name=WP_023254026.1;gbkey=CDS;gene=ttrC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460349.1;locus_tag=CFSAN001082_RS30140;product=tetrathionate reductase subunit TtrC;protein_id=WP_023254026.1;transl_table=11
NZ_APAH01000121.1	RefSeq	gene	9676	12738	.	+	.	ID=gene-CFSAN001082_RS30145;Name=ttrA;gbkey=Gene;gene=ttrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30145;old_locus_tag=CFSAN001082_06166
NZ_APAH01000121.1	Protein Homology	CDS	9676	12738	.	+	0	ID=cds-WP_023254027.1;Parent=gene-CFSAN001082_RS30145;Dbxref=GenBank:WP_023254027.1;Name=WP_023254027.1;Ontology_term=GO:0016491,GO:0043546;gbkey=CDS;gene=ttrA;go_function=oxidoreductase activity|0016491||IEA,molybdopterin cofactor binding|0043546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460348.1;locus_tag=CFSAN001082_RS30145;product=tetrathionate reductase subunit TtrA;protein_id=WP_023254027.1;transl_table=11
##sequence-region NZ_APAH01000122.1 1 29845
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000122.1	RefSeq	region	1	29845	.	+	.	ID=NZ_APAH01000122.1:1..29845;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000122.1	RefSeq	gene	1	193	.	+	.	ID=gene-CFSAN001082_RS30150;Name=CFSAN001082_RS30150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30150;old_locus_tag=CFSAN001082_06171;partial=true;start_range=.,1
NZ_APAH01000122.1	Protein Homology	CDS	1	193	.	+	1	ID=cds-WP_023254028.1;Parent=gene-CFSAN001082_RS30150;Dbxref=GenBank:WP_023254028.1;Name=WP_023254028.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308540.1;locus_tag=CFSAN001082_RS30150;partial=true;product=HHA domain-containing protein;protein_id=WP_023254028.1;start_range=.,1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	372	923	.	+	.	ID=gene-CFSAN001082_RS30155;Name=maa;gbkey=Gene;gene=maa;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30155;old_locus_tag=CFSAN001082_06176
NZ_APAH01000122.1	Protein Homology	CDS	372	923	.	+	0	ID=cds-WP_001278790.1;Parent=gene-CFSAN001082_RS30155;Dbxref=GenBank:WP_001278790.1;Name=WP_001278790.1;Ontology_term=GO:0016407;gbkey=CDS;gene=maa;go_function=acetyltransferase activity|0016407||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459467.1;locus_tag=CFSAN001082_RS30155;product=maltose O-acetyltransferase;protein_id=WP_001278790.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	1041	1511	.	+	.	ID=gene-CFSAN001082_RS30160;Name=CFSAN001082_RS30160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30160;old_locus_tag=CFSAN001082_06181
NZ_APAH01000122.1	Protein Homology	CDS	1041	1511	.	+	0	ID=cds-WP_000136183.1;Parent=gene-CFSAN001082_RS30160;Dbxref=GenBank:WP_000136183.1;Name=WP_000136183.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459466.1;locus_tag=CFSAN001082_RS30160;product=YlaC family protein;protein_id=WP_000136183.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	1567	1707	.	-	.	ID=gene-CFSAN001082_RS30165;Name=ykgO;gbkey=Gene;gene=ykgO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30165;old_locus_tag=CFSAN001082_06186
NZ_APAH01000122.1	Protein Homology	CDS	1567	1707	.	-	0	ID=cds-WP_001197749.1;Parent=gene-CFSAN001082_RS30165;Dbxref=GenBank:WP_001197749.1;Name=WP_001197749.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=ykgO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459465.1;locus_tag=CFSAN001082_RS30165;product=type B 50S ribosomal protein L36;protein_id=WP_001197749.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	1713	1973	.	-	.	ID=gene-CFSAN001082_RS30170;Name=CFSAN001082_RS30170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30170;old_locus_tag=CFSAN001082_06191
NZ_APAH01000122.1	Protein Homology	CDS	1713	1973	.	-	0	ID=cds-WP_000801415.1;Parent=gene-CFSAN001082_RS30170;Dbxref=GenBank:WP_000801415.1;Name=WP_000801415.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459464.1;locus_tag=CFSAN001082_RS30170;product=type B 50S ribosomal protein L31;protein_id=WP_000801415.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	2198	3748	.	+	.	ID=gene-CFSAN001082_RS30175;Name=CFSAN001082_RS30175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30175;old_locus_tag=CFSAN001082_06196
NZ_APAH01000122.1	Protein Homology	CDS	2198	3748	.	+	0	ID=cds-WP_023254029.1;Parent=gene-CFSAN001082_RS30175;Dbxref=GenBank:WP_023254029.1;Name=WP_023254029.1;Ontology_term=GO:0007165,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459463.1;locus_tag=CFSAN001082_RS30175;product=EAL domain-containing protein;protein_id=WP_023254029.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	3798	3894	.	-	.	ID=gene-CFSAN001082_RS46270;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=SRP_RNA;locus_tag=CFSAN001082_RS46270
NZ_APAH01000122.1	cmsearch	SRP_RNA	3798	3894	.	-	.	ID=rna-CFSAN001082_RS46270;Parent=gene-CFSAN001082_RS46270;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46270;product=signal recognition particle sRNA small type
NZ_APAH01000122.1	cmsearch	exon	3798	3894	.	-	.	ID=exon-CFSAN001082_RS46270-1;Parent=rna-CFSAN001082_RS46270;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46270;product=signal recognition particle sRNA small type
NZ_APAH01000122.1	RefSeq	gene	3979	4368	.	+	.	ID=gene-CFSAN001082_RS0123120;Name=CFSAN001082_RS0123120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123120;old_locus_tag=CFSAN001082_06201
NZ_APAH01000122.1	Protein Homology	CDS	3979	4368	.	+	0	ID=cds-WP_000961286.1;Parent=gene-CFSAN001082_RS0123120;Dbxref=GenBank:WP_000961286.1;Name=WP_000961286.1;Ontology_term=GO:0006281,GO:0003677,GO:0003824,GO:0003908;gbkey=CDS;go_function=DNA binding|0003677||IEA,catalytic activity|0003824||IEA,methylated-DNA-[protein]-cysteine S-methyltransferase activity|0003908||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459462.1;locus_tag=CFSAN001082_RS0123120;product=MGMT family protein;protein_id=WP_000961286.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	4401	4970	.	-	.	ID=gene-CFSAN001082_RS30180;Name=CFSAN001082_RS30180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30180;old_locus_tag=CFSAN001082_06206
NZ_APAH01000122.1	Protein Homology	CDS	4401	4970	.	-	0	ID=cds-WP_000779802.1;Parent=gene-CFSAN001082_RS30180;Dbxref=GenBank:WP_000779802.1;Name=WP_000779802.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459461.1;locus_tag=CFSAN001082_RS30180;product=YbaY family lipoprotein;protein_id=WP_000779802.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	5185	6045	.	+	.	ID=gene-CFSAN001082_RS30185;Name=tesB;gbkey=Gene;gene=tesB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30185;old_locus_tag=CFSAN001082_06211
NZ_APAH01000122.1	Protein Homology	CDS	5185	6045	.	+	0	ID=cds-WP_000084176.1;Parent=gene-CFSAN001082_RS30185;Dbxref=GenBank:WP_000084176.1;Name=WP_000084176.1;gbkey=CDS;gene=tesB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459460.1;locus_tag=CFSAN001082_RS30185;product=acyl-CoA thioesterase II;protein_id=WP_000084176.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	6145	7431	.	-	.	ID=gene-CFSAN001082_RS30190;Name=amtB;gbkey=Gene;gene=amtB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30190;old_locus_tag=CFSAN001082_06216
NZ_APAH01000122.1	Protein Homology	CDS	6145	7431	.	-	0	ID=cds-WP_023241804.1;Parent=gene-CFSAN001082_RS30190;Dbxref=GenBank:WP_023241804.1;Name=WP_023241804.1;Ontology_term=GO:0072488,GO:0008519,GO:0005886;gbkey=CDS;gene=amtB;go_component=plasma membrane|0005886||IEA;go_function=ammonium channel activity|0008519||IEA;go_process=ammonium transmembrane transport|0072488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459459.1;locus_tag=CFSAN001082_RS30190;product=ammonium transporter AmtB;protein_id=WP_023241804.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	7463	7801	.	-	.	ID=gene-CFSAN001082_RS30195;Name=glnK;gbkey=Gene;gene=glnK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30195;old_locus_tag=CFSAN001082_06221
NZ_APAH01000122.1	Protein Homology	CDS	7463	7801	.	-	0	ID=cds-WP_000780341.1;Parent=gene-CFSAN001082_RS30195;Dbxref=GenBank:WP_000780341.1;Name=WP_000780341.1;Ontology_term=GO:0006808,GO:0030234;gbkey=CDS;gene=glnK;go_function=enzyme regulator activity|0030234||IEA;go_process=regulation of nitrogen utilization|0006808||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459458.1;locus_tag=CFSAN001082_RS30195;product=P-II family nitrogen regulator;protein_id=WP_000780341.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	8014	9795	.	-	.	ID=gene-CFSAN001082_RS30200;Name=CFSAN001082_RS30200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30200;old_locus_tag=CFSAN001082_06226
NZ_APAH01000122.1	Protein Homology	CDS	8014	9795	.	-	0	ID=cds-WP_001256070.1;Parent=gene-CFSAN001082_RS30200;Dbxref=GenBank:WP_001256070.1;Name=WP_001256070.1;Ontology_term=GO:0055085,GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459457.1;locus_tag=CFSAN001082_RS30200;product=SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;protein_id=WP_001256070.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	9788	11560	.	-	.	ID=gene-CFSAN001082_RS30205;Name=CFSAN001082_RS30205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30205;old_locus_tag=CFSAN001082_06231
NZ_APAH01000122.1	Protein Homology	CDS	9788	11560	.	-	0	ID=cds-WP_001235560.1;Parent=gene-CFSAN001082_RS30205;Dbxref=GenBank:WP_001235560.1;Name=WP_001235560.1;Ontology_term=GO:0055085,GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459456.1;locus_tag=CFSAN001082_RS30205;product=SmdA family multidrug ABC transporter permease/ATP-binding protein;protein_id=WP_001235560.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	11601	12059	.	-	.	ID=gene-CFSAN001082_RS30210;Name=decR;gbkey=Gene;gene=decR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30210;old_locus_tag=CFSAN001082_06236
NZ_APAH01000122.1	Protein Homology	CDS	11601	12059	.	-	0	ID=cds-WP_000884593.1;Parent=gene-CFSAN001082_RS30210;Dbxref=GenBank:WP_000884593.1;Name=WP_000884593.1;gbkey=CDS;gene=decR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459455.1;locus_tag=CFSAN001082_RS30210;product=DNA-binding transcriptional regulator DecR;protein_id=WP_000884593.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	12172	13227	.	+	.	ID=gene-CFSAN001082_RS30215;Name=cdsH;gbkey=Gene;gene=cdsH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30215;old_locus_tag=CFSAN001082_06241
NZ_APAH01000122.1	Protein Homology	CDS	12172	13227	.	+	0	ID=cds-WP_077911133.1;Parent=gene-CFSAN001082_RS30215;Dbxref=GenBank:WP_077911133.1;Name=WP_077911133.1;gbkey=CDS;gene=cdsH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459454.1;locus_tag=CFSAN001082_RS30215;product=cysteine desulfhydrase;protein_id=WP_077911133.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	13277	14095	.	-	.	ID=gene-CFSAN001082_RS30220;Name=cof;gbkey=Gene;gene=cof;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30220;old_locus_tag=CFSAN001082_06246
NZ_APAH01000122.1	Protein Homology	CDS	13277	14095	.	-	0	ID=cds-WP_000113030.1;Parent=gene-CFSAN001082_RS30220;Dbxref=GenBank:WP_000113030.1;Name=WP_000113030.1;Ontology_term=GO:0016818;gbkey=CDS;gene=cof;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459453.1;locus_tag=CFSAN001082_RS30220;product=HMP-PP phosphatase;protein_id=WP_000113030.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	14196	15896	.	+	.	ID=gene-CFSAN001082_RS30225;Name=CFSAN001082_RS30225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30225;old_locus_tag=CFSAN001082_06251
NZ_APAH01000122.1	Protein Homology	CDS	14196	15896	.	+	0	ID=cds-WP_023254031.1;Parent=gene-CFSAN001082_RS30225;Dbxref=GenBank:WP_023254031.1;Name=WP_023254031.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459452.1;locus_tag=CFSAN001082_RS30225;product=SgrR family transcriptional regulator;protein_id=WP_023254031.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	15960	16655	.	+	.	ID=gene-CFSAN001082_RS30230;Name=queC;gbkey=Gene;gene=queC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30230;old_locus_tag=CFSAN001082_06256
NZ_APAH01000122.1	Protein Homology	CDS	15960	16655	.	+	0	ID=cds-WP_000817201.1;Parent=gene-CFSAN001082_RS30230;Dbxref=GenBank:WP_000817201.1;Name=WP_000817201.1;gbkey=CDS;gene=queC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459451.1;locus_tag=CFSAN001082_RS30230;product=7-cyano-7-deazaguanine synthase QueC;protein_id=WP_000817201.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	16761	17159	.	-	.	ID=gene-CFSAN001082_RS30235;Name=fadM;gbkey=Gene;gene=fadM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30235;old_locus_tag=CFSAN001082_06261
NZ_APAH01000122.1	Protein Homology	CDS	16761	17159	.	-	0	ID=cds-WP_001194543.1;Parent=gene-CFSAN001082_RS30235;Dbxref=GenBank:WP_001194543.1;Name=WP_001194543.1;gbkey=CDS;gene=fadM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459450.1;locus_tag=CFSAN001082_RS30235;product=long-chain acyl-CoA thioesterase FadM;protein_id=WP_001194543.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	17263	17637	.	-	.	ID=gene-CFSAN001082_RS30240;Name=CFSAN001082_RS30240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30240;old_locus_tag=CFSAN001082_06266
NZ_APAH01000122.1	Protein Homology	CDS	17263	17637	.	-	0	ID=cds-WP_000680322.1;Parent=gene-CFSAN001082_RS30240;Dbxref=GenBank:WP_000680322.1;Name=WP_000680322.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459449.1;locus_tag=CFSAN001082_RS30240;product=helix-hairpin-helix domain-containing protein;protein_id=WP_000680322.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	17787	19658	.	-	.	ID=gene-CFSAN001082_RS30245;Name=ppiD;gbkey=Gene;gene=ppiD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30245;old_locus_tag=CFSAN001082_06271
NZ_APAH01000122.1	Protein Homology	CDS	17787	19658	.	-	0	ID=cds-WP_023254032.1;Parent=gene-CFSAN001082_RS30245;Dbxref=GenBank:WP_023254032.1;Name=WP_023254032.1;Ontology_term=GO:0003755;gbkey=CDS;gene=ppiD;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459448.1;locus_tag=CFSAN001082_RS30245;product=peptidylprolyl isomerase;protein_id=WP_023254032.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	19949	20239	.	-	.	ID=gene-CFSAN001082_RS30250;Name=hupB;gbkey=Gene;gene=hupB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30250;old_locus_tag=CFSAN001082_06276
NZ_APAH01000122.1	Protein Homology	CDS	19949	20239	.	-	0	ID=cds-WP_254888479.1;Parent=gene-CFSAN001082_RS30250;Dbxref=GenBank:WP_254888479.1;Name=WP_254888479.1;gbkey=CDS;gene=hupB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013356995.1;locus_tag=CFSAN001082_RS30250;product=nucleoid-associated protein HU-beta;protein_id=WP_254888479.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	20430	22784	.	-	.	ID=gene-CFSAN001082_RS30255;Name=lon;gbkey=Gene;gene=lon;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30255;old_locus_tag=CFSAN001082_06281
NZ_APAH01000122.1	Protein Homology	CDS	20430	22784	.	-	0	ID=cds-WP_001067723.1;Parent=gene-CFSAN001082_RS30255;Dbxref=GenBank:WP_001067723.1;Name=WP_001067723.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0016887,GO:0043565;gbkey=CDS;gene=lon;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA,ATP hydrolysis activity|0016887||IEA,sequence-specific DNA binding|0043565||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001469947.1;locus_tag=CFSAN001082_RS30255;product=endopeptidase La;protein_id=WP_001067723.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	22970	24241	.	-	.	ID=gene-CFSAN001082_RS30260;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30260;old_locus_tag=CFSAN001082_06286
NZ_APAH01000122.1	Protein Homology	CDS	22970	24241	.	-	0	ID=cds-WP_000130314.1;Parent=gene-CFSAN001082_RS30260;Dbxref=GenBank:WP_000130314.1;Name=WP_000130314.1;Ontology_term=GO:0005524,GO:0051082,GO:0140662,GO:0009368;gbkey=CDS;gene=clpX;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP binding|0005524||IEA,unfolded protein binding|0051082||IEA,ATP-dependent protein folding chaperone|0140662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001396736.1;locus_tag=CFSAN001082_RS30260;product=ATP-dependent protease ATP-binding subunit ClpX;protein_id=WP_000130314.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	24492	25115	.	-	.	ID=gene-CFSAN001082_RS30265;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30265;old_locus_tag=CFSAN001082_06291
NZ_APAH01000122.1	Protein Homology	CDS	24492	25115	.	-	0	ID=cds-WP_000122257.1;Parent=gene-CFSAN001082_RS30265;Dbxref=GenBank:WP_000122257.1;Name=WP_000122257.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0009368;gbkey=CDS;gene=clpP;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006809880.1;locus_tag=CFSAN001082_RS30265;product=ATP-dependent Clp endopeptidase proteolytic subunit ClpP;protein_id=WP_000122257.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	25362	26660	.	-	.	ID=gene-CFSAN001082_RS30270;Name=tig;gbkey=Gene;gene=tig;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30270;old_locus_tag=CFSAN001082_06296
NZ_APAH01000122.1	Protein Homology	CDS	25362	26660	.	-	0	ID=cds-WP_001198406.1;Parent=gene-CFSAN001082_RS30270;Dbxref=GenBank:WP_001198406.1;Name=WP_001198406.1;Ontology_term=GO:0015031,GO:0051083,GO:0003755,GO:0051082,GO:0005854;gbkey=CDS;gene=tig;go_component=nascent polypeptide-associated complex|0005854||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,unfolded protein binding|0051082||IEA;go_process=protein transport|0015031||IEA,'de novo' cotranslational protein folding|0051083||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001716227.1;locus_tag=CFSAN001082_RS30270;product=trigger factor;protein_id=WP_001198406.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	27007	27324	.	-	.	ID=gene-CFSAN001082_RS30275;Name=bolA;gbkey=Gene;gene=bolA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30275;old_locus_tag=CFSAN001082_06301
NZ_APAH01000122.1	Protein Homology	CDS	27007	27324	.	-	0	ID=cds-WP_000973433.1;Parent=gene-CFSAN001082_RS30275;Dbxref=GenBank:WP_000973433.1;Name=WP_000973433.1;gbkey=CDS;gene=bolA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459442.1;locus_tag=CFSAN001082_RS30275;product=transcriptional regulator BolA;protein_id=WP_000973433.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	27628	28206	.	+	.	ID=gene-CFSAN001082_RS30280;Name=CFSAN001082_RS30280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30280;old_locus_tag=CFSAN001082_06306
NZ_APAH01000122.1	Protein Homology	CDS	27628	28206	.	+	0	ID=cds-WP_001537832.1;Parent=gene-CFSAN001082_RS30280;Dbxref=GenBank:WP_001537832.1;Name=WP_001537832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225436.1;locus_tag=CFSAN001082_RS30280;product=lipoprotein;protein_id=WP_001537832.1;transl_table=11
NZ_APAH01000122.1	RefSeq	gene	28250	29725	.	+	.	ID=gene-CFSAN001082_RS30285;Name=ampG;gbkey=Gene;gene=ampG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30285;old_locus_tag=CFSAN001082_06311
NZ_APAH01000122.1	Protein Homology	CDS	28250	29725	.	+	0	ID=cds-WP_023254033.1;Parent=gene-CFSAN001082_RS30285;Dbxref=GenBank:WP_023254033.1;Name=WP_023254033.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=ampG;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459440.1;locus_tag=CFSAN001082_RS30285;product=muropeptide MFS transporter AmpG;protein_id=WP_023254033.1;transl_table=11
##sequence-region NZ_APAH01000123.1 1 6458
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000123.1	RefSeq	region	1	6458	.	+	.	ID=NZ_APAH01000123.1:1..6458;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000123.1	RefSeq	gene	28	321	.	+	.	ID=gene-CFSAN001082_RS30290;Name=CFSAN001082_RS30290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30290;old_locus_tag=CFSAN001082_06316
NZ_APAH01000123.1	Protein Homology	CDS	28	321	.	+	0	ID=cds-WP_024150258.1;Parent=gene-CFSAN001082_RS30290;Dbxref=GenBank:WP_024150258.1;Name=WP_024150258.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001529817.1;locus_tag=CFSAN001082_RS30290;product=phage anti-RecBCD protein;protein_id=WP_024150258.1;transl_table=11
NZ_APAH01000123.1	RefSeq	gene	332	502	.	+	.	ID=gene-CFSAN001082_RS46725;Name=CFSAN001082_RS46725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46725;old_locus_tag=CFSAN001082_06321
NZ_APAH01000123.1	Protein Homology	CDS	332	502	.	+	0	ID=cds-WP_001214770.1;Parent=gene-CFSAN001082_RS46725;Dbxref=GenBank:WP_001214770.1;Name=WP_001214770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001214771.1;locus_tag=CFSAN001082_RS46725;product=DUF2737 family protein;protein_id=WP_001214770.1;transl_table=11
NZ_APAH01000123.1	RefSeq	gene	499	1080	.	+	.	ID=gene-CFSAN001082_RS30295;Name=CFSAN001082_RS30295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30295;old_locus_tag=CFSAN001082_06326
NZ_APAH01000123.1	Protein Homology	CDS	499	1080	.	+	0	ID=cds-WP_024150259.1;Parent=gene-CFSAN001082_RS30295;Dbxref=GenBank:WP_024150259.1;Name=WP_024150259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000665849.1;locus_tag=CFSAN001082_RS30295;product=hypothetical protein;protein_id=WP_024150259.1;transl_table=11
NZ_APAH01000123.1	RefSeq	gene	1190	1705	.	+	.	ID=gene-CFSAN001082_RS30300;Name=CFSAN001082_RS30300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30300;old_locus_tag=CFSAN001082_06331
NZ_APAH01000123.1	Protein Homology	CDS	1190	1705	.	+	0	ID=cds-WP_023254036.1;Parent=gene-CFSAN001082_RS30300;Dbxref=GenBank:WP_023254036.1;Name=WP_023254036.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000071068.1;locus_tag=CFSAN001082_RS30300;product=DUF262 domain-containing protein;protein_id=WP_023254036.1;transl_table=11
NZ_APAH01000123.1	RefSeq	pseudogene	1855	1995	.	+	.	ID=gene-CFSAN001082_RS48765;Name=CFSAN001082_RS48765;end_range=1995,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48765;partial=true;pseudo=true;start_range=.,1855
NZ_APAH01000123.1	Protein Homology	CDS	1855	1995	.	+	0	ID=cds-CFSAN001082_RS48765;Parent=gene-CFSAN001082_RS48765;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1995,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000151007.1;locus_tag=CFSAN001082_RS48765;partial=true;product=ead/Ea22-like family protein;pseudo=true;start_range=.,1855;transl_table=11
NZ_APAH01000123.1	RefSeq	gene	2381	2638	.	+	.	ID=gene-CFSAN001082_RS30310;Name=CFSAN001082_RS30310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30310;old_locus_tag=CFSAN001082_06341
NZ_APAH01000123.1	Protein Homology	CDS	2381	2638	.	+	0	ID=cds-WP_000224239.1;Parent=gene-CFSAN001082_RS30310;Dbxref=GenBank:WP_000224239.1;Name=WP_000224239.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000224241.1;locus_tag=CFSAN001082_RS30310;product=hypothetical protein;protein_id=WP_000224239.1;transl_table=11
NZ_APAH01000123.1	RefSeq	gene	2649	3197	.	+	.	ID=gene-CFSAN001082_RS30315;Name=CFSAN001082_RS30315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30315;old_locus_tag=CFSAN001082_06346
NZ_APAH01000123.1	Protein Homology	CDS	2649	3197	.	+	0	ID=cds-WP_023254038.1;Parent=gene-CFSAN001082_RS30315;Dbxref=GenBank:WP_023254038.1;Name=WP_023254038.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835578.1;locus_tag=CFSAN001082_RS30315;product=hypothetical protein;protein_id=WP_023254038.1;transl_table=11
NZ_APAH01000123.1	RefSeq	gene	3194	3748	.	+	.	ID=gene-CFSAN001082_RS30320;Name=CFSAN001082_RS30320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30320;old_locus_tag=CFSAN001082_06351
NZ_APAH01000123.1	Protein Homology	CDS	3194	3748	.	+	0	ID=cds-WP_023254039.1;Parent=gene-CFSAN001082_RS30320;Dbxref=GenBank:WP_023254039.1;Name=WP_023254039.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000209970.1;locus_tag=CFSAN001082_RS30320;product=DUF551 domain-containing protein;protein_id=WP_023254039.1;transl_table=11
NZ_APAH01000123.1	RefSeq	gene	4015	5226	.	-	.	ID=gene-CFSAN001082_RS30325;Name=CFSAN001082_RS30325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30325;old_locus_tag=CFSAN001082_06356
NZ_APAH01000123.1	Protein Homology	CDS	4015	5226	.	-	0	ID=cds-WP_023254040.1;Parent=gene-CFSAN001082_RS30325;Dbxref=GenBank:WP_023254040.1;Name=WP_023254040.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001130518.1;locus_tag=CFSAN001082_RS30325;product=tyrosine-type recombinase/integrase;protein_id=WP_023254040.1;transl_table=11
NZ_APAH01000123.1	RefSeq	pseudogene	5246	5463	.	-	.	ID=gene-CFSAN001082_RS0123135;Name=CFSAN001082_RS0123135;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0123135;pseudo=true
NZ_APAH01000123.1	Protein Homology	CDS	5246	5463	.	-	0	ID=cds-CFSAN001082_RS0123135;Parent=gene-CFSAN001082_RS0123135;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447756.1;locus_tag=CFSAN001082_RS0123135;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000123.1	RefSeq	gene	5636	6458	.	-	.	ID=gene-CFSAN001082_RS0123140;Name=CFSAN001082_RS0123140;end_range=6458,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123140;old_locus_tag=CFSAN001082_06361;partial=true
NZ_APAH01000123.1	Protein Homology	CDS	5636	6458	.	-	1	ID=cds-WP_031612683.1;Parent=gene-CFSAN001082_RS0123140;Dbxref=GenBank:WP_031612683.1;Name=WP_031612683.1;Ontology_term=GO:0003676,GO:0004519,GO:0046872;end_range=6458,.;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,endonuclease activity|0004519||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460296.1;locus_tag=CFSAN001082_RS0123140;partial=true;product=DNA/RNA non-specific endonuclease;protein_id=WP_031612683.1;transl_table=11
##sequence-region NZ_APAH01000124.1 1 5184
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000124.1	RefSeq	region	1	5184	.	+	.	ID=NZ_APAH01000124.1:1..5184;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000124.1	RefSeq	gene	1	1118	.	-	.	ID=gene-CFSAN001082_RS30330;Name=caiC;gbkey=Gene;gene=caiC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30330;old_locus_tag=CFSAN001082_06366;partial=true;start_range=.,1
NZ_APAH01000124.1	Protein Homology	CDS	1	1118	.	-	0	ID=cds-WP_023254042.1;Parent=gene-CFSAN001082_RS30330;Dbxref=GenBank:WP_023254042.1;Name=WP_023254042.1;Ontology_term=GO:0009437,GO:0016405;gbkey=CDS;gene=caiC;go_function=CoA-ligase activity|0016405||IEA;go_process=carnitine metabolic process|0009437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459076.1;locus_tag=CFSAN001082_RS30330;partial=true;product=crotonobetaine/carnitine-CoA ligase;protein_id=WP_023254042.1;start_range=.,1;transl_table=11
NZ_APAH01000124.1	RefSeq	gene	1181	2398	.	-	.	ID=gene-CFSAN001082_RS30335;Name=caiB;gbkey=Gene;gene=caiB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30335;old_locus_tag=CFSAN001082_06371
NZ_APAH01000124.1	Protein Homology	CDS	1181	2398	.	-	0	ID=cds-WP_001016209.1;Parent=gene-CFSAN001082_RS30335;Dbxref=GenBank:WP_001016209.1;Name=WP_001016209.1;Ontology_term=GO:0009437,GO:0016782;gbkey=CDS;gene=caiB;go_function=transferase activity%2C transferring sulphur-containing groups|0016782||IEA;go_process=carnitine metabolic process|0009437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459077.1;locus_tag=CFSAN001082_RS30335;product=L-carnitine CoA-transferase;protein_id=WP_001016209.1;transl_table=11
NZ_APAH01000124.1	RefSeq	gene	2510	3652	.	-	.	ID=gene-CFSAN001082_RS30340;Name=caiA;gbkey=Gene;gene=caiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30340;old_locus_tag=CFSAN001082_06376
NZ_APAH01000124.1	Protein Homology	CDS	2510	3652	.	-	0	ID=cds-WP_000347134.1;Parent=gene-CFSAN001082_RS30340;Dbxref=GenBank:WP_000347134.1;Name=WP_000347134.1;Ontology_term=GO:0009437,GO:0003995,GO:0016627;gbkey=CDS;gene=caiA;go_function=acyl-CoA dehydrogenase activity|0003995||IEA,oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA;go_process=carnitine metabolic process|0009437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124373.1;locus_tag=CFSAN001082_RS30340;product=crotonobetainyl-CoA dehydrogenase;protein_id=WP_000347134.1;transl_table=11
NZ_APAH01000124.1	RefSeq	gene	3687	5184	.	-	.	ID=gene-CFSAN001082_RS30345;Name=caiT;end_range=5184,.;gbkey=Gene;gene=caiT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30345;old_locus_tag=CFSAN001082_06381;partial=true
NZ_APAH01000124.1	Protein Homology	CDS	3687	5184	.	-	1	ID=cds-WP_023254043.1;Parent=gene-CFSAN001082_RS30345;Dbxref=GenBank:WP_023254043.1;Name=WP_023254043.1;end_range=5184,.;gbkey=CDS;gene=caiT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459079.1;locus_tag=CFSAN001082_RS30345;partial=true;product=L-carnitine/gamma-butyrobetaine antiporter;protein_id=WP_023254043.1;transl_table=11
##sequence-region NZ_APAH01000125.1 1 29640
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000125.1	RefSeq	region	1	29640	.	+	.	ID=NZ_APAH01000125.1:1..29640;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000125.1	RefSeq	gene	41	664	.	-	.	ID=gene-CFSAN001082_RS30350;Name=CFSAN001082_RS30350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30350;old_locus_tag=CFSAN001082_06386
NZ_APAH01000125.1	Protein Homology	CDS	41	664	.	-	0	ID=cds-WP_023254044.1;Parent=gene-CFSAN001082_RS30350;Dbxref=GenBank:WP_023254044.1;Name=WP_023254044.1;Ontology_term=GO:0008753,GO:0009055,GO:0010181,GO:0016491,GO:0050136,GO:0050446;gbkey=CDS;go_function=NADPH dehydrogenase (quinone) activity|0008753||IEA,electron transfer activity|0009055||IEA,FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA,NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA,azobenzene reductase activity|0050446||IEA;inference=COORDINATES: protein motif:HMM:NF014573.6;locus_tag=CFSAN001082_RS30350;product=FMN-dependent NADH-azoreductase;protein_id=WP_023254044.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	765	1670	.	+	.	ID=gene-CFSAN001082_RS30355;Name=CFSAN001082_RS30355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30355;old_locus_tag=CFSAN001082_06391
NZ_APAH01000125.1	Protein Homology	CDS	765	1670	.	+	0	ID=cds-WP_000568121.1;Parent=gene-CFSAN001082_RS30355;Dbxref=GenBank:WP_000568121.1;Name=WP_000568121.1;Ontology_term=GO:0006355,GO:0001216,GO:0032993;gbkey=CDS;go_component=protein-DNA complex|0032993||IEA;go_function=DNA-binding transcription activator activity|0001216||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441073.1;locus_tag=CFSAN001082_RS30355;product=LysR family transcriptional regulator;protein_id=WP_000568121.1;transl_table=11
NZ_APAH01000125.1	RefSeq	pseudogene	1944	2172	.	-	.	ID=gene-CFSAN001082_RS47760;Name=CFSAN001082_RS47760;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47760;partial=true;pseudo=true;start_range=.,1944
NZ_APAH01000125.1	Protein Homology	CDS	1944	2172	.	-	0	ID=cds-CFSAN001082_RS47760;Parent=gene-CFSAN001082_RS47760;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005975783.1;locus_tag=CFSAN001082_RS47760;partial=true;product=Arm DNA-binding domain-containing protein;pseudo=true;start_range=.,1944;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	2331	2406	.	-	.	ID=gene-CFSAN001082_RS30360;Name=CFSAN001082_RS30360;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS30360;old_locus_tag=CFSAN001082_t06553
NZ_APAH01000125.1	tRNAscan-SE	tRNA	2331	2406	.	-	.	ID=rna-CFSAN001082_RS30360;Parent=gene-CFSAN001082_RS30360;anticodon=(pos:complement(2371..2373));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS30360;product=tRNA-Phe
NZ_APAH01000125.1	tRNAscan-SE	exon	2331	2406	.	-	.	ID=exon-CFSAN001082_RS30360-1;Parent=rna-CFSAN001082_RS30360;anticodon=(pos:complement(2371..2373));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS30360;product=tRNA-Phe
NZ_APAH01000125.1	RefSeq	gene	2512	3219	.	-	.	ID=gene-CFSAN001082_RS30365;Name=CFSAN001082_RS30365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30365;old_locus_tag=CFSAN001082_06401
NZ_APAH01000125.1	Protein Homology	CDS	2512	3219	.	-	0	ID=cds-WP_000234466.1;Parent=gene-CFSAN001082_RS30365;Dbxref=GenBank:WP_000234466.1;Name=WP_000234466.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462031.1;locus_tag=CFSAN001082_RS30365;product=DUF554 domain-containing protein;protein_id=WP_000234466.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	3645	5780	.	+	.	ID=gene-CFSAN001082_RS30375;Name=CFSAN001082_RS30375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30375;old_locus_tag=CFSAN001082_06411
NZ_APAH01000125.1	Protein Homology	CDS	3645	5780	.	+	0	ID=cds-WP_023254045.1;Parent=gene-CFSAN001082_RS30375;Dbxref=GenBank:WP_023254045.1;Name=WP_023254045.1;Ontology_term=GO:0006596,GO:0016831;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA;go_process=polyamine biosynthetic process|0006596||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462030.1;locus_tag=CFSAN001082_RS30375;product=ornithine decarboxylase;protein_id=WP_023254045.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	5842	7098	.	-	.	ID=gene-CFSAN001082_RS30380;Name=CFSAN001082_RS30380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30380;old_locus_tag=CFSAN001082_06416
NZ_APAH01000125.1	Protein Homology	CDS	5842	7098	.	-	0	ID=cds-WP_023254046.1;Parent=gene-CFSAN001082_RS30380;Dbxref=GenBank:WP_023254046.1;Name=WP_023254046.1;Ontology_term=GO:0015858,GO:0055085,GO:0015506,GO:0022857;gbkey=CDS;go_function=nucleoside:proton symporter activity|0015506||IEA,transmembrane transporter activity|0022857||IEA;go_process=nucleoside transport|0015858||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462029.1;locus_tag=CFSAN001082_RS30380;product=nucleoside permease;protein_id=WP_023254046.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	7315	8400	.	-	.	ID=gene-CFSAN001082_RS30385;Name=mltC;gbkey=Gene;gene=mltC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30385;old_locus_tag=CFSAN001082_06421
NZ_APAH01000125.1	Protein Homology	CDS	7315	8400	.	-	0	ID=cds-WP_000976289.1;Parent=gene-CFSAN001082_RS30385;Dbxref=GenBank:WP_000976289.1;Name=WP_000976289.1;Ontology_term=GO:0000270,GO:0008933,GO:0016020;gbkey=CDS;gene=mltC;go_component=membrane|0016020||IEA;go_function=peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462028.1;locus_tag=CFSAN001082_RS30385;product=membrane-bound lytic murein transglycosylase MltC;protein_id=WP_000976289.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	8513	8788	.	-	.	ID=gene-CFSAN001082_RS30390;Name=CFSAN001082_RS30390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30390;old_locus_tag=CFSAN001082_06426
NZ_APAH01000125.1	Protein Homology	CDS	8513	8788	.	-	0	ID=cds-WP_023254047.1;Parent=gene-CFSAN001082_RS30390;Dbxref=GenBank:WP_023254047.1;Name=WP_023254047.1;Ontology_term=GO:0005506;gbkey=CDS;go_function=iron ion binding|0005506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462027.1;locus_tag=CFSAN001082_RS30390;product=oxidative damage protection protein;protein_id=WP_023254047.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	8816	9868	.	-	.	ID=gene-CFSAN001082_RS30395;Name=mutY;gbkey=Gene;gene=mutY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30395;old_locus_tag=CFSAN001082_06431
NZ_APAH01000125.1	Protein Homology	CDS	8816	9868	.	-	0	ID=cds-WP_001148959.1;Parent=gene-CFSAN001082_RS30395;Dbxref=GenBank:WP_001148959.1;Name=WP_001148959.1;Ontology_term=GO:0006281,GO:0019104;gbkey=CDS;gene=mutY;go_function=DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462026.1;locus_tag=CFSAN001082_RS30395;product=A/G-specific adenine glycosylase;protein_id=WP_001148959.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	10023	10742	.	+	.	ID=gene-CFSAN001082_RS30400;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30400;old_locus_tag=CFSAN001082_06436
NZ_APAH01000125.1	Protein Homology	CDS	10023	10742	.	+	0	ID=cds-WP_000786893.1;Parent=gene-CFSAN001082_RS30400;Dbxref=GenBank:WP_000786893.1;Name=WP_000786893.1;Ontology_term=GO:0006400,GO:0008176;gbkey=CDS;gene=trmB;go_function=tRNA (guanine(46)-N7)-methyltransferase activity|0008176||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462025.1;locus_tag=CFSAN001082_RS30400;product=tRNA (guanosine(46)-N7)-methyltransferase TrmB;protein_id=WP_000786893.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	10742	11068	.	+	.	ID=gene-CFSAN001082_RS30405;Name=CFSAN001082_RS30405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30405;old_locus_tag=CFSAN001082_06441
NZ_APAH01000125.1	Protein Homology	CDS	10742	11068	.	+	0	ID=cds-WP_001107559.1;Parent=gene-CFSAN001082_RS30405;Dbxref=GenBank:WP_001107559.1;Name=WP_001107559.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462024.1;locus_tag=CFSAN001082_RS30405;product=YggL family protein;protein_id=WP_001107559.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	11118	11837	.	+	.	ID=gene-CFSAN001082_RS30410;Name=CFSAN001082_RS30410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30410;old_locus_tag=CFSAN001082_06446
NZ_APAH01000125.1	Protein Homology	CDS	11118	11837	.	+	0	ID=cds-WP_000984827.1;Parent=gene-CFSAN001082_RS30410;Dbxref=GenBank:WP_000984827.1;Name=WP_000984827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462023.1;locus_tag=CFSAN001082_RS30410;product=DUF2884 domain-containing protein;protein_id=WP_000984827.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	12026	13072	.	+	.	ID=gene-CFSAN001082_RS30415;Name=ansB;gbkey=Gene;gene=ansB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30415;old_locus_tag=CFSAN001082_06451
NZ_APAH01000125.1	Protein Homology	CDS	12026	13072	.	+	0	ID=cds-WP_000394189.1;Parent=gene-CFSAN001082_RS30415;Dbxref=GenBank:WP_000394189.1;Name=WP_000394189.1;Ontology_term=GO:0006528,GO:0004067;gbkey=CDS;gene=ansB;go_function=asparaginase activity|0004067||IEA;go_process=asparagine metabolic process|0006528||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462022.1;locus_tag=CFSAN001082_RS30415;product=L-asparaginase 2;protein_id=WP_000394189.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	13205	14212	.	+	.	ID=gene-CFSAN001082_RS30420;Name=CFSAN001082_RS30420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30420;old_locus_tag=CFSAN001082_06456
NZ_APAH01000125.1	Protein Homology	CDS	13205	14212	.	+	0	ID=cds-WP_023254048.1;Parent=gene-CFSAN001082_RS30420;Dbxref=GenBank:WP_023254048.1;Name=WP_023254048.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462021.1;locus_tag=CFSAN001082_RS30420;product=DUF1202 domain-containing protein;protein_id=WP_023254048.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	14303	15439	.	-	.	ID=gene-CFSAN001082_RS30425;Name=hemW;gbkey=Gene;gene=hemW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30425;old_locus_tag=CFSAN001082_06461
NZ_APAH01000125.1	Protein Homology	CDS	14303	15439	.	-	0	ID=cds-WP_023254049.1;Parent=gene-CFSAN001082_RS30425;Dbxref=GenBank:WP_023254049.1;Name=WP_023254049.1;Ontology_term=GO:0006779,GO:0051539,GO:0051989,GO:0005737;gbkey=CDS;gene=hemW;go_component=cytoplasm|0005737||IEA;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,coproporphyrinogen dehydrogenase activity|0051989||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462020.1;locus_tag=CFSAN001082_RS30425;product=radical SAM family heme chaperone HemW;protein_id=WP_023254049.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	15432	16025	.	-	.	ID=gene-CFSAN001082_RS30430;Name=CFSAN001082_RS30430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30430;old_locus_tag=CFSAN001082_06466
NZ_APAH01000125.1	Protein Homology	CDS	15432	16025	.	-	0	ID=cds-WP_023254050.1;Parent=gene-CFSAN001082_RS30430;Dbxref=GenBank:WP_023254050.1;Name=WP_023254050.1;Ontology_term=GO:0009143,GO:0047429;gbkey=CDS;go_function=nucleoside triphosphate diphosphatase activity|0047429||IEA;go_process=nucleoside triphosphate catabolic process|0009143||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462019.1;locus_tag=CFSAN001082_RS30430;product=XTP/dITP diphosphatase;protein_id=WP_023254050.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	16033	16323	.	-	.	ID=gene-CFSAN001082_RS30435;Name=yggU;gbkey=Gene;gene=yggU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30435;old_locus_tag=CFSAN001082_06471
NZ_APAH01000125.1	Protein Homology	CDS	16033	16323	.	-	0	ID=cds-WP_001277203.1;Parent=gene-CFSAN001082_RS30435;Dbxref=GenBank:WP_001277203.1;Name=WP_001277203.1;gbkey=CDS;gene=yggU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462018.1;locus_tag=CFSAN001082_RS30435;product=DUF167 family protein YggU;protein_id=WP_001277203.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	16320	16886	.	-	.	ID=gene-CFSAN001082_RS30440;Name=CFSAN001082_RS30440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30440;old_locus_tag=CFSAN001082_06476
NZ_APAH01000125.1	Protein Homology	CDS	16320	16886	.	-	0	ID=cds-WP_001094848.1;Parent=gene-CFSAN001082_RS30440;Dbxref=GenBank:WP_001094848.1;Name=WP_001094848.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462017.1;locus_tag=CFSAN001082_RS30440;product=YggT family protein;protein_id=WP_001094848.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	16905	17609	.	-	.	ID=gene-CFSAN001082_RS30445;Name=CFSAN001082_RS30445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30445;old_locus_tag=CFSAN001082_06481
NZ_APAH01000125.1	Protein Homology	CDS	16905	17609	.	-	0	ID=cds-WP_000997790.1;Parent=gene-CFSAN001082_RS30445;Dbxref=GenBank:WP_000997790.1;Name=WP_000997790.1;Ontology_term=GO:0030170;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462016.1;locus_tag=CFSAN001082_RS30445;product=YggS family pyridoxal phosphate-dependent enzyme;protein_id=WP_000997790.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	17627	18607	.	+	.	ID=gene-CFSAN001082_RS30450;Name=CFSAN001082_RS30450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30450;old_locus_tag=CFSAN001082_06486
NZ_APAH01000125.1	Protein Homology	CDS	17627	18607	.	+	0	ID=cds-WP_023202164.1;Parent=gene-CFSAN001082_RS30450;Dbxref=GenBank:WP_023202164.1;Name=WP_023202164.1;Ontology_term=GO:0043107,GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;go_process=type IV pilus-dependent motility|0043107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462015.1;locus_tag=CFSAN001082_RS30450;product=type IV pilus twitching motility protein PilT;protein_id=WP_023202164.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	18736	19422	.	+	.	ID=gene-CFSAN001082_RS30455;Name=CFSAN001082_RS30455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30455;old_locus_tag=CFSAN001082_06491
NZ_APAH01000125.1	Protein Homology	CDS	18736	19422	.	+	0	ID=cds-WP_000098329.1;Parent=gene-CFSAN001082_RS30455;Dbxref=GenBank:WP_000098329.1;Name=WP_000098329.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462014.1;locus_tag=CFSAN001082_RS30455;product=IclR family transcriptional regulator domain-containing protein;protein_id=WP_000098329.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	19469	19885	.	-	.	ID=gene-CFSAN001082_RS30460;Name=ruvX;gbkey=Gene;gene=ruvX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30460;old_locus_tag=CFSAN001082_06496
NZ_APAH01000125.1	Protein Homology	CDS	19469	19885	.	-	0	ID=cds-WP_001285490.1;Parent=gene-CFSAN001082_RS30460;Dbxref=GenBank:WP_001285490.1;Name=WP_001285490.1;Ontology_term=GO:0006364;gbkey=CDS;gene=ruvX;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462013.1;locus_tag=CFSAN001082_RS30460;product=Holliday junction resolvase RuvX;protein_id=WP_001285490.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	19885	20448	.	-	.	ID=gene-CFSAN001082_RS30465;Name=CFSAN001082_RS30465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30465;old_locus_tag=CFSAN001082_06501
NZ_APAH01000125.1	Protein Homology	CDS	19885	20448	.	-	0	ID=cds-WP_001053167.1;Parent=gene-CFSAN001082_RS30465;Dbxref=GenBank:WP_001053167.1;Name=WP_001053167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417423.4;locus_tag=CFSAN001082_RS30465;product=YqgE/AlgH family protein;protein_id=WP_001053167.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	20664	21611	.	-	.	ID=gene-CFSAN001082_RS30470;Name=gshB;gbkey=Gene;gene=gshB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30470;old_locus_tag=CFSAN001082_06506
NZ_APAH01000125.1	Protein Homology	CDS	20664	21611	.	-	0	ID=cds-WP_023232636.1;Parent=gene-CFSAN001082_RS30470;Dbxref=GenBank:WP_023232636.1;Name=WP_023232636.1;Ontology_term=GO:0006750,GO:0004363,GO:0005524,GO:0046872;gbkey=CDS;gene=gshB;go_function=glutathione synthase activity|0004363||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462011.1;locus_tag=CFSAN001082_RS30470;product=glutathione synthase;protein_id=WP_023232636.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	21631	22362	.	-	.	ID=gene-CFSAN001082_RS30475;Name=rsmE;gbkey=Gene;gene=rsmE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30475;old_locus_tag=CFSAN001082_06511
NZ_APAH01000125.1	Protein Homology	CDS	21631	22362	.	-	0	ID=cds-WP_001222488.1;Parent=gene-CFSAN001082_RS30475;Dbxref=GenBank:WP_001222488.1;Name=WP_001222488.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;gene=rsmE;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311849.2;locus_tag=CFSAN001082_RS30475;product=16S rRNA (uracil(1498)-N(3))-methyltransferase;protein_id=WP_001222488.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	22439	23146	.	-	.	ID=gene-CFSAN001082_RS30480;Name=endA;gbkey=Gene;gene=endA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30480;old_locus_tag=CFSAN001082_06516
NZ_APAH01000125.1	Protein Homology	CDS	22439	23146	.	-	0	ID=cds-WP_000286124.1;Parent=gene-CFSAN001082_RS30480;Dbxref=GenBank:WP_000286124.1;Name=WP_000286124.1;Ontology_term=GO:0004518;gbkey=CDS;gene=endA;go_function=nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462009.1;locus_tag=CFSAN001082_RS30480;product=deoxyribonuclease I;protein_id=WP_000286124.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	23242	23739	.	-	.	ID=gene-CFSAN001082_RS30485;Name=CFSAN001082_RS30485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30485;old_locus_tag=CFSAN001082_06521
NZ_APAH01000125.1	Protein Homology	CDS	23242	23739	.	-	0	ID=cds-WP_023254051.1;Parent=gene-CFSAN001082_RS30485;Dbxref=GenBank:WP_023254051.1;Name=WP_023254051.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462008.1;locus_tag=CFSAN001082_RS30485;product=SprT family zinc-dependent metalloprotease;protein_id=WP_023254051.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	23818	25212	.	-	.	ID=gene-CFSAN001082_RS30490;Name=galP;gbkey=Gene;gene=galP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30490;old_locus_tag=CFSAN001082_06526
NZ_APAH01000125.1	Protein Homology	CDS	23818	25212	.	-	0	ID=cds-WP_001113171.1;Parent=gene-CFSAN001082_RS30490;Dbxref=GenBank:WP_001113171.1;Name=WP_001113171.1;gbkey=CDS;gene=galP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462007.1;locus_tag=CFSAN001082_RS30490;product=galactose/proton symporter;protein_id=WP_001113171.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	25705	26859	.	-	.	ID=gene-CFSAN001082_RS30495;Name=metK;gbkey=Gene;gene=metK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30495;old_locus_tag=CFSAN001082_06531
NZ_APAH01000125.1	Protein Homology	CDS	25705	26859	.	-	0	ID=cds-WP_001062140.1;Parent=gene-CFSAN001082_RS30495;Dbxref=GenBank:WP_001062140.1;Name=WP_001062140.1;Ontology_term=GO:0006556,GO:0004478,GO:0005524;gbkey=CDS;gene=metK;go_function=methionine adenosyltransferase activity|0004478||IEA,ATP binding|0005524||IEA;go_process=S-adenosylmethionine biosynthetic process|0006556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123306.1;locus_tag=CFSAN001082_RS30495;product=methionine adenosyltransferase;protein_id=WP_001062140.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	26915	27214	.	+	.	ID=gene-CFSAN001082_RS46750;Name=CFSAN001082_RS46750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46750;old_locus_tag=CFSAN001082_06536
NZ_APAH01000125.1	GeneMarkS-2+	CDS	26915	27214	.	+	0	ID=cds-WP_001543499.1;Parent=gene-CFSAN001082_RS46750;Dbxref=GenBank:WP_001543499.1;Name=WP_001543499.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS46750;product=hypothetical protein;protein_id=WP_001543499.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	27274	27423	.	+	.	ID=gene-CFSAN001082_RS49080;Name=CFSAN001082_RS49080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49080
NZ_APAH01000125.1	Protein Homology	CDS	27274	27423	.	+	0	ID=cds-WP_001751809.1;Parent=gene-CFSAN001082_RS49080;Dbxref=GenBank:WP_001751809.1;Name=WP_001751809.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051195.1;locus_tag=CFSAN001082_RS49080;product=hypothetical protein;protein_id=WP_001751809.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	27509	27640	.	+	.	ID=gene-CFSAN001082_RS30505;Name=yqgB;gbkey=Gene;gene=yqgB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30505;old_locus_tag=CFSAN001082_06541
NZ_APAH01000125.1	Protein Homology	CDS	27509	27640	.	+	0	ID=cds-WP_000729109.1;Parent=gene-CFSAN001082_RS30505;Dbxref=GenBank:WP_000729109.1;Name=WP_000729109.1;gbkey=CDS;gene=yqgB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462003.1;locus_tag=CFSAN001082_RS30505;product=acid stress response protein YqgB;protein_id=WP_000729109.1;transl_table=11
NZ_APAH01000125.1	RefSeq	gene	27649	29625	.	+	.	ID=gene-CFSAN001082_RS30510;Name=speA;gbkey=Gene;gene=speA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30510;old_locus_tag=CFSAN001082_06546
NZ_APAH01000125.1	Protein Homology	CDS	27649	29625	.	+	0	ID=cds-WP_001278580.1;Parent=gene-CFSAN001082_RS30510;Dbxref=GenBank:WP_001278580.1;Name=WP_001278580.1;Ontology_term=GO:0006527,GO:0008792;gbkey=CDS;gene=speA;go_function=arginine decarboxylase activity|0008792||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462002.1;locus_tag=CFSAN001082_RS30510;product=biosynthetic arginine decarboxylase;protein_id=WP_001278580.1;transl_table=11
##sequence-region NZ_APAH01000126.1 1 345
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000126.1	RefSeq	region	1	345	.	+	.	ID=NZ_APAH01000126.1:1..345;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000127.1 1 18861
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000127.1	RefSeq	region	1	18861	.	+	.	ID=NZ_APAH01000127.1:1..18861;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000127.1	RefSeq	gene	89	1690	.	+	.	ID=gene-CFSAN001082_RS30515;Name=aceB;gbkey=Gene;gene=aceB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30515;old_locus_tag=CFSAN001082_06553
NZ_APAH01000127.1	Protein Homology	CDS	89	1690	.	+	0	ID=cds-WP_023254052.1;Parent=gene-CFSAN001082_RS30515;Dbxref=GenBank:WP_023254052.1;Name=WP_023254052.1;Ontology_term=GO:0006097,GO:0004474;gbkey=CDS;gene=aceB;go_function=malate synthase activity|0004474||IEA;go_process=glyoxylate cycle|0006097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463048.1;locus_tag=CFSAN001082_RS30515;product=malate synthase A;protein_id=WP_023254052.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	1722	3026	.	+	.	ID=gene-CFSAN001082_RS30520;Name=aceA;gbkey=Gene;gene=aceA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30520;old_locus_tag=CFSAN001082_06558
NZ_APAH01000127.1	Protein Homology	CDS	1722	3026	.	+	0	ID=cds-WP_000857882.1;Parent=gene-CFSAN001082_RS30520;Dbxref=GenBank:WP_000857882.1;Name=WP_000857882.1;Ontology_term=GO:0019752,GO:0004451;gbkey=CDS;gene=aceA;go_function=isocitrate lyase activity|0004451||IEA;go_process=carboxylic acid metabolic process|0019752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463049.1;locus_tag=CFSAN001082_RS30520;product=isocitrate lyase;protein_id=WP_000857882.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	3128	4879	.	+	.	ID=gene-CFSAN001082_RS30525;Name=aceK;gbkey=Gene;gene=aceK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30525;old_locus_tag=CFSAN001082_06563
NZ_APAH01000127.1	Protein Homology	CDS	3128	4879	.	+	0	ID=cds-WP_023254053.1;Parent=gene-CFSAN001082_RS30525;Dbxref=GenBank:WP_023254053.1;Name=WP_023254053.1;Ontology_term=GO:0006006,GO:0008772,GO:0016791;gbkey=CDS;gene=aceK;go_function=[isocitrate dehydrogenase (NADP+)] kinase activity|0008772||IEA,phosphatase activity|0016791||IEA;go_process=glucose metabolic process|0006006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463050.1;locus_tag=CFSAN001082_RS30525;product=bifunctional isocitrate dehydrogenase kinase/phosphatase;protein_id=WP_023254053.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	4843	5250	.	-	.	ID=gene-CFSAN001082_RS30530;Name=CFSAN001082_RS30530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30530;old_locus_tag=CFSAN001082_06568
NZ_APAH01000127.1	Protein Homology	CDS	4843	5250	.	-	0	ID=cds-WP_010989091.1;Parent=gene-CFSAN001082_RS30530;Dbxref=GenBank:WP_010989091.1;Name=WP_010989091.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463051.1;locus_tag=CFSAN001082_RS30530;product=ASCH domain-containing protein;protein_id=WP_010989091.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	5261	6085	.	-	.	ID=gene-CFSAN001082_RS30535;Name=iclR;gbkey=Gene;gene=iclR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30535;old_locus_tag=CFSAN001082_06573
NZ_APAH01000127.1	Protein Homology	CDS	5261	6085	.	-	0	ID=cds-WP_000226434.1;Parent=gene-CFSAN001082_RS30535;Dbxref=GenBank:WP_000226434.1;Name=WP_000226434.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=iclR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463052.1;locus_tag=CFSAN001082_RS30535;product=glyoxylate bypass operon transcriptional repressor IclR;protein_id=WP_000226434.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	6389	10072	.	+	.	ID=gene-CFSAN001082_RS30540;Name=metH;gbkey=Gene;gene=metH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30540;old_locus_tag=CFSAN001082_06578
NZ_APAH01000127.1	Protein Homology	CDS	6389	10072	.	+	0	ID=cds-WP_023254054.1;Parent=gene-CFSAN001082_RS30540;Dbxref=GenBank:WP_023254054.1;Name=WP_023254054.1;Ontology_term=GO:0009086,GO:0008270,GO:0008705,GO:0031419;gbkey=CDS;gene=metH;go_function=zinc ion binding|0008270||IEA,methionine synthase activity|0008705||IEA,cobalamin binding|0031419||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312964.1;locus_tag=CFSAN001082_RS30540;product=methionine synthase;protein_id=WP_023254054.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	10339	11970	.	+	.	ID=gene-CFSAN001082_RS30545;Name=CFSAN001082_RS30545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30545;old_locus_tag=CFSAN001082_06583
NZ_APAH01000127.1	Protein Homology	CDS	10339	11970	.	+	0	ID=cds-WP_000956811.1;Parent=gene-CFSAN001082_RS30545;Dbxref=GenBank:WP_000956811.1;Name=WP_000956811.1;Ontology_term=GO:0044341,GO:0005436,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=sodium:phosphate symporter activity|0005436||IEA;go_process=sodium-dependent phosphate transport|0044341||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463054.1;locus_tag=CFSAN001082_RS30545;product=Na/Pi cotransporter family protein;protein_id=WP_000956811.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	12046	12735	.	-	.	ID=gene-CFSAN001082_RS30550;Name=pepE;gbkey=Gene;gene=pepE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30550;old_locus_tag=CFSAN001082_06588
NZ_APAH01000127.1	Protein Homology	CDS	12046	12735	.	-	0	ID=cds-WP_000421776.1;Parent=gene-CFSAN001082_RS30550;Dbxref=GenBank:WP_000421776.1;Name=WP_000421776.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;gene=pepE;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463055.1;locus_tag=CFSAN001082_RS30550;product=dipeptidase PepE;protein_id=WP_000421776.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	12807	12908	.	+	.	ID=gene-CFSAN001082_RS0123160;Name=CFSAN001082_RS0123160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123160
NZ_APAH01000127.1	Protein Homology	CDS	12807	12908	.	+	0	ID=cds-WP_001541281.1;Parent=gene-CFSAN001082_RS0123160;Dbxref=GenBank:WP_001541281.1;Name=WP_001541281.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463056.1;locus_tag=CFSAN001082_RS0123160;product=hypothetical protein;protein_id=WP_001541281.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	12943	13482	.	+	.	ID=gene-CFSAN001082_RS30555;Name=CFSAN001082_RS30555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30555;old_locus_tag=CFSAN001082_06593
NZ_APAH01000127.1	Protein Homology	CDS	12943	13482	.	+	0	ID=cds-WP_001096724.1;Parent=gene-CFSAN001082_RS30555;Dbxref=GenBank:WP_001096724.1;Name=WP_001096724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463057.1;locus_tag=CFSAN001082_RS30555;product=DUF2058 domain-containing protein;protein_id=WP_001096724.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	13529	14398	.	+	.	ID=gene-CFSAN001082_RS30560;Name=rluF;gbkey=Gene;gene=rluF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30560;old_locus_tag=CFSAN001082_06598
NZ_APAH01000127.1	Protein Homology	CDS	13529	14398	.	+	0	ID=cds-WP_000954611.1;Parent=gene-CFSAN001082_RS30560;Dbxref=GenBank:WP_000954611.1;Name=WP_000954611.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=rluF;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463058.1;locus_tag=CFSAN001082_RS30560;product=23S rRNA pseudouridine(2604) synthase RluF;protein_id=WP_000954611.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	14395	14667	.	-	.	ID=gene-CFSAN001082_RS30565;Name=CFSAN001082_RS30565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30565;old_locus_tag=CFSAN001082_06603
NZ_APAH01000127.1	Protein Homology	CDS	14395	14667	.	-	0	ID=cds-WP_001207628.1;Parent=gene-CFSAN001082_RS30565;Dbxref=GenBank:WP_001207628.1;Name=WP_001207628.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463059.1;locus_tag=CFSAN001082_RS30565;product=DUF3811 domain-containing protein;protein_id=WP_001207628.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	14730	15488	.	-	.	ID=gene-CFSAN001082_RS30570;Name=CFSAN001082_RS30570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30570;old_locus_tag=CFSAN001082_06608
NZ_APAH01000127.1	Protein Homology	CDS	14730	15488	.	-	0	ID=cds-WP_023254055.1;Parent=gene-CFSAN001082_RS30570;Dbxref=GenBank:WP_023254055.1;Name=WP_023254055.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001068167.1;locus_tag=CFSAN001082_RS30570;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_023254055.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	15475	16338	.	-	.	ID=gene-CFSAN001082_RS30575;Name=CFSAN001082_RS30575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30575;old_locus_tag=CFSAN001082_06613
NZ_APAH01000127.1	Protein Homology	CDS	15475	16338	.	-	0	ID=cds-WP_023195260.1;Parent=gene-CFSAN001082_RS30575;Dbxref=GenBank:WP_023195260.1;Name=WP_023195260.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000924639.1;locus_tag=CFSAN001082_RS30575;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_023195260.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	16355	17194	.	-	.	ID=gene-CFSAN001082_RS30580;Name=CFSAN001082_RS30580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30580;old_locus_tag=CFSAN001082_06618
NZ_APAH01000127.1	Protein Homology	CDS	16355	17194	.	-	0	ID=cds-WP_000472332.1;Parent=gene-CFSAN001082_RS30580;Dbxref=GenBank:WP_000472332.1;Name=WP_000472332.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000472335.1;locus_tag=CFSAN001082_RS30580;product=hypothetical protein;protein_id=WP_000472332.1;transl_table=11
NZ_APAH01000127.1	RefSeq	gene	17218	18807	.	-	.	ID=gene-CFSAN001082_RS30585;Name=CFSAN001082_RS30585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30585;old_locus_tag=CFSAN001082_06623
NZ_APAH01000127.1	Protein Homology	CDS	17218	18807	.	-	0	ID=cds-WP_000716849.1;Parent=gene-CFSAN001082_RS30585;Dbxref=GenBank:WP_000716849.1;Name=WP_000716849.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000716843.1;locus_tag=CFSAN001082_RS30585;product=PTS sugar transporter;protein_id=WP_000716849.1;transl_table=11
##sequence-region NZ_APAH01000128.1 1 15911
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000128.1	RefSeq	region	1	15911	.	+	.	ID=NZ_APAH01000128.1:1..15911;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000128.1	RefSeq	gene	1	77	.	-	.	ID=gene-CFSAN001082_RS48770;Name=CFSAN001082_RS48770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48770;partial=true;start_range=.,1
NZ_APAH01000128.1	Protein Homology	CDS	1	77	.	-	0	ID=cds-WP_272944494.1;Parent=gene-CFSAN001082_RS48770;Dbxref=GenBank:WP_272944494.1;Name=WP_272944494.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462489.1;locus_tag=CFSAN001082_RS48770;partial=true;product=hypothetical protein;protein_id=WP_272944494.1;start_range=.,1;transl_table=11
NZ_APAH01000128.1	RefSeq	gene	308	1804	.	+	.	ID=gene-CFSAN001082_RS30590;Name=pitA;gbkey=Gene;gene=pitA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30590;old_locus_tag=CFSAN001082_06633
NZ_APAH01000128.1	Protein Homology	CDS	308	1804	.	+	0	ID=cds-WP_000902764.1;Parent=gene-CFSAN001082_RS30590;Dbxref=GenBank:WP_000902764.1;Name=WP_000902764.1;Ontology_term=GO:0006817,GO:0016020;gbkey=CDS;gene=pitA;go_component=membrane|0016020||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462490.1;locus_tag=CFSAN001082_RS30590;product=inorganic phosphate transporter PitA;protein_id=WP_000902764.1;transl_table=11
NZ_APAH01000128.1	RefSeq	gene	1945	2280	.	-	.	ID=gene-CFSAN001082_RS30595;Name=uspB;gbkey=Gene;gene=uspB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30595;old_locus_tag=CFSAN001082_06638
NZ_APAH01000128.1	Protein Homology	CDS	1945	2280	.	-	0	ID=cds-WP_000626193.1;Parent=gene-CFSAN001082_RS30595;Dbxref=GenBank:WP_000626193.1;Name=WP_000626193.1;gbkey=CDS;gene=uspB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462491.1;locus_tag=CFSAN001082_RS30595;product=universal stress protein UspB;protein_id=WP_000626193.1;transl_table=11
NZ_APAH01000128.1	RefSeq	gene	2668	3102	.	+	.	ID=gene-CFSAN001082_RS30600;Name=uspA;gbkey=Gene;gene=uspA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30600;old_locus_tag=CFSAN001082_06643
NZ_APAH01000128.1	Protein Homology	CDS	2668	3102	.	+	0	ID=cds-WP_000323565.1;Parent=gene-CFSAN001082_RS30600;Dbxref=GenBank:WP_000323565.1;Name=WP_000323565.1;gbkey=CDS;gene=uspA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462492.1;locus_tag=CFSAN001082_RS30600;product=universal stress protein UspA;protein_id=WP_000323565.1;transl_table=11
NZ_APAH01000128.1	RefSeq	gene	3427	4899	.	+	.	ID=gene-CFSAN001082_RS30605;Name=dtpB;gbkey=Gene;gene=dtpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30605;old_locus_tag=CFSAN001082_06648
NZ_APAH01000128.1	Protein Homology	CDS	3427	4899	.	+	0	ID=cds-WP_001098275.1;Parent=gene-CFSAN001082_RS30605;Dbxref=GenBank:WP_001098275.1;Name=WP_001098275.1;gbkey=CDS;gene=dtpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462493.1;locus_tag=CFSAN001082_RS30605;product=dipeptide/tripeptide permease DtpB;protein_id=WP_001098275.1;transl_table=11
NZ_APAH01000128.1	RefSeq	gene	4991	5749	.	-	.	ID=gene-CFSAN001082_RS30610;Name=rsmJ;gbkey=Gene;gene=rsmJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30610;old_locus_tag=CFSAN001082_06653
NZ_APAH01000128.1	Protein Homology	CDS	4991	5749	.	-	0	ID=cds-WP_023202869.1;Parent=gene-CFSAN001082_RS30610;Dbxref=GenBank:WP_023202869.1;Name=WP_023202869.1;Ontology_term=GO:0031167,GO:0008990;gbkey=CDS;gene=rsmJ;go_function=rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462494.1;locus_tag=CFSAN001082_RS30610;product=16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ;protein_id=WP_023202869.1;transl_table=11
NZ_APAH01000128.1	RefSeq	gene	5756	7798	.	-	.	ID=gene-CFSAN001082_RS30615;Name=prlC;gbkey=Gene;gene=prlC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30615;old_locus_tag=CFSAN001082_06658
NZ_APAH01000128.1	Protein Homology	CDS	5756	7798	.	-	0	ID=cds-WP_000184178.1;Parent=gene-CFSAN001082_RS30615;Dbxref=GenBank:WP_000184178.1;Name=WP_000184178.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=prlC;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020317218.1;locus_tag=CFSAN001082_RS30615;product=oligopeptidase A;protein_id=WP_000184178.1;transl_table=11
NZ_APAH01000128.1	RefSeq	gene	7961	8614	.	-	.	ID=gene-CFSAN001082_RS30620;Name=CFSAN001082_RS30620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30620;old_locus_tag=CFSAN001082_06663
NZ_APAH01000128.1	Protein Homology	CDS	7961	8614	.	-	0	ID=cds-WP_000469190.1;Parent=gene-CFSAN001082_RS30620;Dbxref=GenBank:WP_000469190.1;Name=WP_000469190.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000469196.1;locus_tag=CFSAN001082_RS30620;product=hypothetical protein;protein_id=WP_000469190.1;transl_table=11
NZ_APAH01000128.1	RefSeq	gene	8892	9335	.	+	.	ID=gene-CFSAN001082_RS30625;Name=CFSAN001082_RS30625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30625;old_locus_tag=CFSAN001082_06668
NZ_APAH01000128.1	Protein Homology	CDS	8892	9335	.	+	0	ID=cds-WP_000209571.1;Parent=gene-CFSAN001082_RS30625;Dbxref=GenBank:WP_000209571.1;Name=WP_000209571.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000209569.1;locus_tag=CFSAN001082_RS30625;product=hypothetical protein;protein_id=WP_000209571.1;transl_table=11
NZ_APAH01000128.1	RefSeq	gene	9456	10298	.	+	.	ID=gene-CFSAN001082_RS30630;Name=CFSAN001082_RS30630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30630;old_locus_tag=CFSAN001082_06673
NZ_APAH01000128.1	Protein Homology	CDS	9456	10298	.	+	0	ID=cds-WP_000954233.1;Parent=gene-CFSAN001082_RS30630;Dbxref=GenBank:WP_000954233.1;Name=WP_000954233.1;Ontology_term=GO:0015976,GO:0070475,GO:0003723,GO:0008988,GO:1904047;gbkey=CDS;go_function=RNA binding|0003723||IEA,rRNA (adenine-N6-)-methyltransferase activity|0008988||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=carbon utilization|0015976||IEA,rRNA base methylation|0070475||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462497.1;locus_tag=CFSAN001082_RS30630;product=23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ;protein_id=WP_000954233.1;transl_table=11
NZ_APAH01000128.1	RefSeq	gene	10403	11755	.	+	.	ID=gene-CFSAN001082_RS30635;Name=gorA;gbkey=Gene;gene=gorA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30635;old_locus_tag=CFSAN001082_06678
NZ_APAH01000128.1	Protein Homology	CDS	10403	11755	.	+	0	ID=cds-WP_000160775.1;Parent=gene-CFSAN001082_RS30635;Dbxref=GenBank:WP_000160775.1;Name=WP_000160775.1;Ontology_term=GO:0006749,GO:0045454,GO:0004362,GO:0050660,GO:0050661;gbkey=CDS;gene=gorA;go_function=glutathione-disulfide reductase (NADPH) activity|0004362||IEA,flavin adenine dinucleotide binding|0050660||IEA,NADP binding|0050661||IEA;go_process=glutathione metabolic process|0006749||IEA,cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003861215.1;locus_tag=CFSAN001082_RS30635;product=glutathione-disulfide reductase;protein_id=WP_000160775.1;transl_table=11
NZ_APAH01000128.1	RefSeq	pseudogene	11802	11933	.	-	.	ID=gene-CFSAN001082_RS47770;Name=CFSAN001082_RS47770;end_range=11933,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47770;old_locus_tag=CFSAN001082_06683;partial=true;pseudo=true
NZ_APAH01000128.1	Protein Homology	CDS	11802	11933	.	-	0	ID=cds-CFSAN001082_RS47770;Parent=gene-CFSAN001082_RS47770;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=11933,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462499.1;locus_tag=CFSAN001082_RS47770;partial=true;product=L-asparaginase;pseudo=true;transl_table=11
NZ_APAH01000128.1	RefSeq	pseudogene	11926	12006	.	-	.	ID=gene-CFSAN001082_RS49185;Name=CFSAN001082_RS49185;end_range=12006,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49185;partial=true;pseudo=true;start_range=.,11926
NZ_APAH01000128.1	Protein Homology	CDS	11926	12006	.	-	0	ID=cds-CFSAN001082_RS49185;Parent=gene-CFSAN001082_RS49185;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=12006,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005226344.1;locus_tag=CFSAN001082_RS49185;partial=true;product=asparaginase domain-containing protein;pseudo=true;start_range=.,11926;transl_table=11
NZ_APAH01000128.1	RefSeq	pseudogene	12155	12526	.	-	.	ID=gene-CFSAN001082_RS30640;Name=fraE;gbkey=Gene;gene=fraE;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS30640;old_locus_tag=CFSAN001082_06688;partial=true;pseudo=true;start_range=.,12155
NZ_APAH01000128.1	Protein Homology	CDS	12155	12526	.	-	0	ID=cds-CFSAN001082_RS30640;Parent=gene-CFSAN001082_RS30640;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;gene=fraE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462499.1;locus_tag=CFSAN001082_RS30640;partial=true;product=fructose-asparagine asparaginase;pseudo=true;start_range=.,12155;transl_table=11
NZ_APAH01000128.1	RefSeq	gene	12585	13904	.	-	.	ID=gene-CFSAN001082_RS30645;Name=CFSAN001082_RS30645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30645;old_locus_tag=CFSAN001082_06693
NZ_APAH01000128.1	Protein Homology	CDS	12585	13904	.	-	0	ID=cds-WP_000498935.1;Parent=gene-CFSAN001082_RS30645;Dbxref=GenBank:WP_000498935.1;Name=WP_000498935.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462500.1;locus_tag=CFSAN001082_RS30645;product=anaerobic C4-dicarboxylate transporter family protein;protein_id=WP_000498935.1;transl_table=11
NZ_APAH01000128.1	RefSeq	gene	13958	14803	.	-	.	ID=gene-CFSAN001082_RS30650;Name=fraD;gbkey=Gene;gene=fraD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30650;old_locus_tag=CFSAN001082_06698
NZ_APAH01000128.1	Protein Homology	CDS	13958	14803	.	-	0	ID=cds-WP_023202870.1;Parent=gene-CFSAN001082_RS30650;Dbxref=GenBank:WP_023202870.1;Name=WP_023202870.1;gbkey=CDS;gene=fraD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462501.1;locus_tag=CFSAN001082_RS30650;product=fructose-aspartate kinase;protein_id=WP_023202870.1;transl_table=11
NZ_APAH01000128.1	RefSeq	gene	14867	15844	.	-	.	ID=gene-CFSAN001082_RS30655;Name=fraB;gbkey=Gene;gene=fraB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30655;old_locus_tag=CFSAN001082_06703
NZ_APAH01000128.1	Protein Homology	CDS	14867	15844	.	-	0	ID=cds-WP_010989080.1;Parent=gene-CFSAN001082_RS30655;Dbxref=GenBank:WP_010989080.1;Name=WP_010989080.1;gbkey=CDS;gene=fraB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462502.1;locus_tag=CFSAN001082_RS30655;product=6-phosphofructose-aspartate deglycase;protein_id=WP_010989080.1;transl_table=11
##sequence-region NZ_APAH01000129.1 1 17009
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000129.1	RefSeq	region	1	17009	.	+	.	ID=NZ_APAH01000129.1:1..17009;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000129.1	RefSeq	gene	31	1017	.	-	.	ID=gene-CFSAN001082_RS30660;Name=CFSAN001082_RS30660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30660;old_locus_tag=CFSAN001082_06708
NZ_APAH01000129.1	Protein Homology	CDS	31	1017	.	-	0	ID=cds-WP_023254058.1;Parent=gene-CFSAN001082_RS30660;Dbxref=GenBank:WP_023254058.1;Name=WP_023254058.1;Ontology_term=GO:0004364,GO:0016491;gbkey=CDS;go_function=glutathione transferase activity|0004364||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462147.1;locus_tag=CFSAN001082_RS30660;product=glutathione S-transferase family protein;protein_id=WP_023254058.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	1085	1477	.	-	.	ID=gene-CFSAN001082_RS30665;Name=CFSAN001082_RS30665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30665;old_locus_tag=CFSAN001082_06713
NZ_APAH01000129.1	Protein Homology	CDS	1085	1477	.	-	0	ID=cds-WP_001592732.1;Parent=gene-CFSAN001082_RS30665;Dbxref=GenBank:WP_001592732.1;Name=WP_001592732.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008503138.1;locus_tag=CFSAN001082_RS30665;product=DoxX family protein;protein_id=WP_001592732.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	1725	2024	.	-	.	ID=gene-CFSAN001082_RS30670;Name=CFSAN001082_RS30670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30670;old_locus_tag=CFSAN001082_06718
NZ_APAH01000129.1	Protein Homology	CDS	1725	2024	.	-	0	ID=cds-WP_000095496.1;Parent=gene-CFSAN001082_RS30670;Dbxref=GenBank:WP_000095496.1;Name=WP_000095496.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462145.1;locus_tag=CFSAN001082_RS30670;product=YqjK-like family protein;protein_id=WP_000095496.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	2021	2419	.	-	.	ID=gene-CFSAN001082_RS30675;Name=CFSAN001082_RS30675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30675;old_locus_tag=CFSAN001082_06723
NZ_APAH01000129.1	Protein Homology	CDS	2021	2419	.	-	0	ID=cds-WP_000785626.1;Parent=gene-CFSAN001082_RS30675;Dbxref=GenBank:WP_000785626.1;Name=WP_000785626.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462144.1;locus_tag=CFSAN001082_RS30675;product=phage holin family protein;protein_id=WP_000785626.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	2422	2727	.	-	.	ID=gene-CFSAN001082_RS30680;Name=CFSAN001082_RS30680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30680;old_locus_tag=CFSAN001082_06728
NZ_APAH01000129.1	Protein Homology	CDS	2422	2727	.	-	0	ID=cds-WP_000031219.1;Parent=gene-CFSAN001082_RS30680;Dbxref=GenBank:WP_000031219.1;Name=WP_000031219.1;Ontology_term=GO:0043022,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=ribosome binding|0043022||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462143.1;locus_tag=CFSAN001082_RS30680;product=DUF883 family protein;protein_id=WP_000031219.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	2769	3137	.	-	.	ID=gene-CFSAN001082_RS30685;Name=CFSAN001082_RS30685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30685;old_locus_tag=CFSAN001082_06733
NZ_APAH01000129.1	Protein Homology	CDS	2769	3137	.	-	0	ID=cds-WP_000877297.1;Parent=gene-CFSAN001082_RS30685;Dbxref=GenBank:WP_000877297.1;Name=WP_000877297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462142.1;locus_tag=CFSAN001082_RS30685;product=DUF1090 domain-containing protein;protein_id=WP_000877297.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	3282	3665	.	-	.	ID=gene-CFSAN001082_RS30690;Name=mzrA;gbkey=Gene;gene=mzrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30690;old_locus_tag=CFSAN001082_06738
NZ_APAH01000129.1	Protein Homology	CDS	3282	3665	.	-	0	ID=cds-WP_000917516.1;Parent=gene-CFSAN001082_RS30690;Dbxref=GenBank:WP_000917516.1;Name=WP_000917516.1;gbkey=CDS;gene=mzrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462141.1;locus_tag=CFSAN001082_RS30690;product=EnvZ/OmpR regulon moderator MzrA;protein_id=WP_000917516.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	3669	4331	.	-	.	ID=gene-CFSAN001082_RS30695;Name=yqjA;gbkey=Gene;gene=yqjA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30695;old_locus_tag=CFSAN001082_06743
NZ_APAH01000129.1	Protein Homology	CDS	3669	4331	.	-	0	ID=cds-WP_000422143.1;Parent=gene-CFSAN001082_RS30695;Dbxref=GenBank:WP_000422143.1;Name=WP_000422143.1;gbkey=CDS;gene=yqjA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462140.1;locus_tag=CFSAN001082_RS30695;product=DedA family general envelope maintenance protein YqjA;protein_id=WP_000422143.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	4781	6025	.	-	.	ID=gene-CFSAN001082_RS30700;Name=sstT;gbkey=Gene;gene=sstT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30700;old_locus_tag=CFSAN001082_06748
NZ_APAH01000129.1	Protein Homology	CDS	4781	6025	.	-	0	ID=cds-WP_023254059.1;Parent=gene-CFSAN001082_RS30700;Dbxref=GenBank:WP_023254059.1;Name=WP_023254059.1;Ontology_term=GO:0015826,GO:0032329,GO:0015293,GO:0016020;gbkey=CDS;gene=sstT;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=threonine transport|0015826||IEA,serine transport|0032329||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462139.1;locus_tag=CFSAN001082_RS30700;product=serine/threonine transporter SstT;protein_id=WP_023254059.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	6280	7248	.	-	.	ID=gene-CFSAN001082_RS30705;Name=CFSAN001082_RS30705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30705;old_locus_tag=CFSAN001082_06753
NZ_APAH01000129.1	Protein Homology	CDS	6280	7248	.	-	0	ID=cds-WP_001098833.1;Parent=gene-CFSAN001082_RS30705;Dbxref=GenBank:WP_001098833.1;Name=WP_001098833.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462138.1;locus_tag=CFSAN001082_RS30705;product=TerC family protein;protein_id=WP_001098833.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	7520	8518	.	-	.	ID=gene-CFSAN001082_RS30710;Name=CFSAN001082_RS30710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30710;old_locus_tag=CFSAN001082_06758
NZ_APAH01000129.1	Protein Homology	CDS	7520	8518	.	-	0	ID=cds-WP_000617687.1;Parent=gene-CFSAN001082_RS30710;Dbxref=GenBank:WP_000617687.1;Name=WP_000617687.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462137.1;locus_tag=CFSAN001082_RS30710;product=Gfo/Idh/MocA family protein;protein_id=WP_000617687.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	8607	9299	.	-	.	ID=gene-CFSAN001082_RS30715;Name=CFSAN001082_RS30715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30715;old_locus_tag=CFSAN001082_06763
NZ_APAH01000129.1	Protein Homology	CDS	8607	9299	.	-	0	ID=cds-WP_000951049.1;Parent=gene-CFSAN001082_RS30715;Dbxref=GenBank:WP_000951049.1;Name=WP_000951049.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462136.1;locus_tag=CFSAN001082_RS30715;product=SanA/YdcF family protein;protein_id=WP_000951049.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	9451	9948	.	-	.	ID=gene-CFSAN001082_RS30720;Name=CFSAN001082_RS30720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30720;old_locus_tag=CFSAN001082_06768
NZ_APAH01000129.1	Protein Homology	CDS	9451	9948	.	-	0	ID=cds-WP_000202969.1;Parent=gene-CFSAN001082_RS30720;Dbxref=GenBank:WP_000202969.1;Name=WP_000202969.1;Ontology_term=GO:0006508,GO:0008237,GO:0008270,GO:0016787,GO:0046872;gbkey=CDS;go_function=metallopeptidase activity|0008237||IEA,zinc ion binding|0008270||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462135.1;locus_tag=CFSAN001082_RS30720;product=M48 family metallopeptidase;protein_id=WP_000202969.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	10034	11170	.	+	.	ID=gene-CFSAN001082_RS30725;Name=rlmG;gbkey=Gene;gene=rlmG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30725;old_locus_tag=CFSAN001082_06773
NZ_APAH01000129.1	Protein Homology	CDS	10034	11170	.	+	0	ID=cds-WP_000019990.1;Parent=gene-CFSAN001082_RS30725;Dbxref=GenBank:WP_000019990.1;Name=WP_000019990.1;Ontology_term=GO:0031167,GO:0003676,GO:0008990;gbkey=CDS;gene=rlmG;go_function=nucleic acid binding|0003676||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462134.1;locus_tag=CFSAN001082_RS30725;product=23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG;protein_id=WP_000019990.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	11251	13269	.	-	.	ID=gene-CFSAN001082_RS30730;Name=CFSAN001082_RS30730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30730;old_locus_tag=CFSAN001082_06778
NZ_APAH01000129.1	Protein Homology	CDS	11251	13269	.	-	0	ID=cds-WP_023254060.1;Parent=gene-CFSAN001082_RS30730;Dbxref=GenBank:WP_023254060.1;Name=WP_023254060.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462133.1;locus_tag=CFSAN001082_RS30730;product=NADPH-dependent 2%2C4-dienoyl-CoA reductase;protein_id=WP_023254060.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	13440	14819	.	-	.	ID=gene-CFSAN001082_RS30735;Name=ygjG;gbkey=Gene;gene=ygjG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30735;old_locus_tag=CFSAN001082_06783
NZ_APAH01000129.1	Protein Homology	CDS	13440	14819	.	-	0	ID=cds-WP_072205518.1;Parent=gene-CFSAN001082_RS30735;Dbxref=GenBank:WP_072205518.1;Name=WP_072205518.1;Ontology_term=GO:0009447,GO:0030170,GO:0033094;gbkey=CDS;gene=ygjG;go_function=pyridoxal phosphate binding|0030170||IEA,putrescine--2-oxoglutarate transaminase activity|0033094||IEA;go_process=putrescine catabolic process|0009447||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006894971.1;locus_tag=CFSAN001082_RS30735;product=putrescine aminotransferase;protein_id=WP_072205518.1;transl_table=11
NZ_APAH01000129.1	RefSeq	gene	15249	16769	.	+	.	ID=gene-CFSAN001082_RS30740;Name=CFSAN001082_RS30740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30740;old_locus_tag=CFSAN001082_06793
NZ_APAH01000129.1	Protein Homology	CDS	15249	16769	.	+	0	ID=cds-WP_000094648.1;Parent=gene-CFSAN001082_RS30740;Dbxref=GenBank:WP_000094648.1;Name=WP_000094648.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462131.1;locus_tag=CFSAN001082_RS30740;product=methyl-accepting chemotaxis protein;protein_id=WP_000094648.1;transl_table=11
##sequence-region NZ_APAH01000130.1 1 58110
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000130.1	RefSeq	region	1	58110	.	+	.	ID=NZ_APAH01000130.1:1..58110;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000130.1	RefSeq	gene	1	680	.	-	.	ID=gene-CFSAN001082_RS46765;Name=CFSAN001082_RS46765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46765;old_locus_tag=CFSAN001082_06798;partial=true;start_range=.,1
NZ_APAH01000130.1	Protein Homology	CDS	1	680	.	-	0	ID=cds-WP_023254062.1;Parent=gene-CFSAN001082_RS46765;Dbxref=GenBank:WP_023254062.1;Name=WP_023254062.1;Ontology_term=GO:0035444,GO:0015099;gbkey=CDS;go_function=nickel cation transmembrane transporter activity|0015099||IEA;go_process=nickel cation transmembrane transport|0035444||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012882829.1;locus_tag=CFSAN001082_RS46765;partial=true;product=nickel/cobalt efflux transporter;protein_id=WP_023254062.1;start_range=.,1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	802	1074	.	+	.	ID=gene-CFSAN001082_RS30745;Name=rcnR;gbkey=Gene;gene=rcnR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30745;old_locus_tag=CFSAN001082_06803
NZ_APAH01000130.1	Protein Homology	CDS	802	1074	.	+	0	ID=cds-WP_000019953.1;Parent=gene-CFSAN001082_RS30745;Dbxref=GenBank:WP_000019953.1;Name=WP_000019953.1;gbkey=CDS;gene=rcnR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461940.1;locus_tag=CFSAN001082_RS30745;product=Ni(II)/Co(II)-binding transcriptional repressor RcnR;protein_id=WP_000019953.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	1105	2334	.	-	.	ID=gene-CFSAN001082_RS30750;Name=CFSAN001082_RS30750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30750;old_locus_tag=CFSAN001082_06808
NZ_APAH01000130.1	Protein Homology	CDS	1105	2334	.	-	0	ID=cds-WP_017441098.1;Parent=gene-CFSAN001082_RS30750;Dbxref=GenBank:WP_017441098.1;Name=WP_017441098.1;Ontology_term=GO:0003333,GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transmembrane transport|0003333||IEA,amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461939.1;locus_tag=CFSAN001082_RS30750;product=amino acid permease;protein_id=WP_017441098.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	2476	2931	.	-	.	ID=gene-CFSAN001082_RS30755;Name=CFSAN001082_RS30755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30755;old_locus_tag=CFSAN001082_06813
NZ_APAH01000130.1	Protein Homology	CDS	2476	2931	.	-	0	ID=cds-WP_001519547.1;Parent=gene-CFSAN001082_RS30755;Dbxref=GenBank:WP_001519547.1;Name=WP_001519547.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465480.1;locus_tag=CFSAN001082_RS30755;product=multidrug/biocide efflux PACE transporter;protein_id=WP_001519547.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	3035	3898	.	+	.	ID=gene-CFSAN001082_RS30760;Name=CFSAN001082_RS30760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30760;old_locus_tag=CFSAN001082_06818
NZ_APAH01000130.1	Protein Homology	CDS	3035	3898	.	+	0	ID=cds-WP_001270769.1;Parent=gene-CFSAN001082_RS30760;Dbxref=GenBank:WP_001270769.1;Name=WP_001270769.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461937.1;locus_tag=CFSAN001082_RS30760;product=LysR family transcriptional regulator;protein_id=WP_001270769.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	4021	5199	.	+	.	ID=gene-CFSAN001082_RS30765;Name=CFSAN001082_RS30765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30765;old_locus_tag=CFSAN001082_06823
NZ_APAH01000130.1	Protein Homology	CDS	4021	5199	.	+	0	ID=cds-WP_000665984.1;Parent=gene-CFSAN001082_RS30765;Dbxref=GenBank:WP_000665984.1;Name=WP_000665984.1;Ontology_term=GO:0003985;gbkey=CDS;go_function=acetyl-CoA C-acetyltransferase activity|0003985||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461936.1;locus_tag=CFSAN001082_RS30765;product=acetyl-CoA C-acetyltransferase;protein_id=WP_000665984.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	5629	6465	.	+	.	ID=gene-CFSAN001082_RS30770;Name=kduI;gbkey=Gene;gene=kduI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30770;old_locus_tag=CFSAN001082_06828
NZ_APAH01000130.1	Protein Homology	CDS	5629	6465	.	+	0	ID=cds-WP_000383269.1;Parent=gene-CFSAN001082_RS30770;Dbxref=GenBank:WP_000383269.1;Name=WP_000383269.1;Ontology_term=GO:0045490,GO:0008697;gbkey=CDS;gene=kduI;go_function=4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity|0008697||IEA;go_process=pectin catabolic process|0045490||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461935.1;locus_tag=CFSAN001082_RS30770;product=5-dehydro-4-deoxy-D-glucuronate isomerase;protein_id=WP_000383269.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	6522	7283	.	+	.	ID=gene-CFSAN001082_RS30775;Name=kduD;gbkey=Gene;gene=kduD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30775;old_locus_tag=CFSAN001082_06833
NZ_APAH01000130.1	Protein Homology	CDS	6522	7283	.	+	0	ID=cds-WP_000602497.1;Parent=gene-CFSAN001082_RS30775;Dbxref=GenBank:WP_000602497.1;Name=WP_000602497.1;Ontology_term=GO:0000272,GO:0016491,GO:0051287;gbkey=CDS;gene=kduD;go_function=oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA;go_process=polysaccharide catabolic process|0000272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461934.1;locus_tag=CFSAN001082_RS30775;product=2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;protein_id=WP_000602497.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	7637	9055	.	+	.	ID=gene-CFSAN001082_RS30780;Name=araE;gbkey=Gene;gene=araE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30780;old_locus_tag=CFSAN001082_06838
NZ_APAH01000130.1	Protein Homology	CDS	7637	9055	.	+	0	ID=cds-WP_000253650.1;Parent=gene-CFSAN001082_RS30780;Dbxref=GenBank:WP_000253650.1;Name=WP_000253650.1;gbkey=CDS;gene=araE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461933.1;locus_tag=CFSAN001082_RS30780;product=arabinose-proton symporter AraE;protein_id=WP_000253650.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	9168	9875	.	+	.	ID=gene-CFSAN001082_RS30785;Name=CFSAN001082_RS30785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30785;old_locus_tag=CFSAN001082_06843
NZ_APAH01000130.1	Protein Homology	CDS	9168	9875	.	+	0	ID=cds-WP_000848629.1;Parent=gene-CFSAN001082_RS30785;Dbxref=GenBank:WP_000848629.1;Name=WP_000848629.1;Ontology_term=GO:0008152,GO:0016855;gbkey=CDS;go_function=racemase and epimerase activity%2C acting on amino acids and derivatives|0016855||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461932.1;locus_tag=CFSAN001082_RS30785;product=aspartate/glutamate racemase;protein_id=WP_000848629.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	9847	10782	.	-	.	ID=gene-CFSAN001082_RS30790;Name=CFSAN001082_RS30790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30790;old_locus_tag=CFSAN001082_06848
NZ_APAH01000130.1	Protein Homology	CDS	9847	10782	.	-	0	ID=cds-WP_000741798.1;Parent=gene-CFSAN001082_RS30790;Dbxref=GenBank:WP_000741798.1;Name=WP_000741798.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461931.1;locus_tag=CFSAN001082_RS30790;product=LysR family transcriptional regulator;protein_id=WP_000741798.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	10900	12162	.	+	.	ID=gene-CFSAN001082_RS30795;Name=lysA;gbkey=Gene;gene=lysA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30795;old_locus_tag=CFSAN001082_06853
NZ_APAH01000130.1	Protein Homology	CDS	10900	12162	.	+	0	ID=cds-WP_023254063.1;Parent=gene-CFSAN001082_RS30795;Dbxref=GenBank:WP_023254063.1;Name=WP_023254063.1;Ontology_term=GO:0009089,GO:0008836;gbkey=CDS;gene=lysA;go_function=diaminopimelate decarboxylase activity|0008836||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461930.1;locus_tag=CFSAN001082_RS30795;product=diaminopimelate decarboxylase;protein_id=WP_023254063.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	12172	13194	.	-	.	ID=gene-CFSAN001082_RS30800;Name=CFSAN001082_RS30800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30800;old_locus_tag=CFSAN001082_06858
NZ_APAH01000130.1	Protein Homology	CDS	12172	13194	.	-	0	ID=cds-WP_077911135.1;Parent=gene-CFSAN001082_RS30800;Dbxref=GenBank:WP_077911135.1;Name=WP_077911135.1;Ontology_term=GO:0006351,GO:0006355,GO:0045892,GO:0000976,GO:0003700,GO:0043565;gbkey=CDS;go_function=transcription cis-regulatory region binding|0000976||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461929.1;locus_tag=CFSAN001082_RS30800;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_077911135.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	13205	14233	.	-	.	ID=gene-CFSAN001082_RS30805;Name=galR;gbkey=Gene;gene=galR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30805;old_locus_tag=CFSAN001082_06863
NZ_APAH01000130.1	Protein Homology	CDS	13205	14233	.	-	0	ID=cds-WP_000201030.1;Parent=gene-CFSAN001082_RS30805;Dbxref=GenBank:WP_000201030.1;Name=WP_000201030.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=galR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461928.1;locus_tag=CFSAN001082_RS30805;product=HTH-type transcriptional regulator GalR;protein_id=WP_000201030.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	14826	16985	.	+	.	ID=gene-CFSAN001082_RS30810;Name=aas;gbkey=Gene;gene=aas;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30810;old_locus_tag=CFSAN001082_06868
NZ_APAH01000130.1	Protein Homology	CDS	14826	16985	.	+	0	ID=cds-WP_000896101.1;Parent=gene-CFSAN001082_RS30810;Dbxref=GenBank:WP_000896101.1;Name=WP_000896101.1;Ontology_term=GO:0006631,GO:0008654,GO:0008779,GO:0008922;gbkey=CDS;gene=aas;go_function=acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase activity|0008779||IEA,long-chain fatty acid [acyl-carrier-protein] ligase activity|0008922||IEA;go_process=fatty acid metabolic process|0006631||IEA,phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461927.1;locus_tag=CFSAN001082_RS30810;product=bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase;protein_id=WP_000896101.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	16978	18180	.	+	.	ID=gene-CFSAN001082_RS30815;Name=lplT;gbkey=Gene;gene=lplT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30815;old_locus_tag=CFSAN001082_06873
NZ_APAH01000130.1	Protein Homology	CDS	16978	18180	.	+	0	ID=cds-WP_000004686.1;Parent=gene-CFSAN001082_RS30815;Dbxref=GenBank:WP_000004686.1;Name=WP_000004686.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=lplT;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461926.1;locus_tag=CFSAN001082_RS30815;product=lysophospholipid transporter LplT;protein_id=WP_000004686.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	18267	19307	.	-	.	ID=gene-CFSAN001082_RS30820;Name=CFSAN001082_RS30820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30820;old_locus_tag=CFSAN001082_06878
NZ_APAH01000130.1	Protein Homology	CDS	18267	19307	.	-	0	ID=cds-WP_000558960.1;Parent=gene-CFSAN001082_RS30820;Dbxref=GenBank:WP_000558960.1;Name=WP_000558960.1;Ontology_term=GO:0047834;gbkey=CDS;go_function=D-threo-aldose 1-dehydrogenase activity|0047834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461925.1;locus_tag=CFSAN001082_RS30820;product=NADP(H)-dependent aldo-keto reductase;protein_id=WP_000558960.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	19498	19716	.	-	.	ID=gene-CFSAN001082_RS30825;Name=CFSAN001082_RS30825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30825;old_locus_tag=CFSAN001082_06883
NZ_APAH01000130.1	Protein Homology	CDS	19498	19716	.	-	0	ID=cds-WP_000758662.1;Parent=gene-CFSAN001082_RS30825;Dbxref=GenBank:WP_000758662.1;Name=WP_000758662.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461924.1;locus_tag=CFSAN001082_RS30825;product=YgdI/YgdR family lipoprotein;protein_id=WP_000758662.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	19886	20599	.	-	.	ID=gene-CFSAN001082_RS30830;Name=CFSAN001082_RS30830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30830;old_locus_tag=CFSAN001082_06888
NZ_APAH01000130.1	Protein Homology	CDS	19886	20599	.	-	0	ID=cds-WP_000895635.1;Parent=gene-CFSAN001082_RS30830;Dbxref=GenBank:WP_000895635.1;Name=WP_000895635.1;Ontology_term=GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461923.1;locus_tag=CFSAN001082_RS30830;product=TerC family protein;protein_id=WP_000895635.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	20781	21476	.	-	.	ID=gene-CFSAN001082_RS30835;Name=mutH;gbkey=Gene;gene=mutH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30835;old_locus_tag=CFSAN001082_06893
NZ_APAH01000130.1	Protein Homology	CDS	20781	21476	.	-	0	ID=cds-WP_023194897.1;Parent=gene-CFSAN001082_RS30835;Dbxref=GenBank:WP_023194897.1;Name=WP_023194897.1;Ontology_term=GO:0006304,GO:0004519;gbkey=CDS;gene=mutH;go_function=endonuclease activity|0004519||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461922.1;locus_tag=CFSAN001082_RS30835;product=DNA mismatch repair endonuclease MutH;protein_id=WP_023194897.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	22159	22689	.	+	.	ID=gene-CFSAN001082_RS30840;Name=rppH;gbkey=Gene;gene=rppH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30840;old_locus_tag=CFSAN001082_06898
NZ_APAH01000130.1	Protein Homology	CDS	22159	22689	.	+	0	ID=cds-WP_000564481.1;Parent=gene-CFSAN001082_RS30840;Dbxref=GenBank:WP_000564481.1;Name=WP_000564481.1;Ontology_term=GO:0016787;gbkey=CDS;gene=rppH;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001655775.1;locus_tag=CFSAN001082_RS30840;product=RNA pyrophosphohydrolase;protein_id=WP_000564481.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	22702	24948	.	+	.	ID=gene-CFSAN001082_RS30845;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30845;old_locus_tag=CFSAN001082_06903
NZ_APAH01000130.1	Protein Homology	CDS	22702	24948	.	+	0	ID=cds-WP_000957887.1;Parent=gene-CFSAN001082_RS30845;Dbxref=GenBank:WP_000957887.1;Name=WP_000957887.1;gbkey=CDS;gene=ptsP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461920.1;locus_tag=CFSAN001082_RS30845;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=WP_000957887.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	25164	26039	.	+	.	ID=gene-CFSAN001082_RS30850;Name=lgt;gbkey=Gene;gene=lgt;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30850;old_locus_tag=CFSAN001082_06908
NZ_APAH01000130.1	Protein Homology	CDS	25164	26039	.	+	0	ID=cds-WP_000204645.1;Parent=gene-CFSAN001082_RS30850;Dbxref=GenBank:WP_000204645.1;Name=WP_000204645.1;Ontology_term=GO:0009249,GO:0008961,GO:0016020;gbkey=CDS;gene=lgt;go_component=membrane|0016020||IEA;go_function=phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity|0008961||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461919.1;locus_tag=CFSAN001082_RS30850;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_000204645.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	26046	26840	.	+	.	ID=gene-CFSAN001082_RS30855;Name=thyA;gbkey=Gene;gene=thyA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30855;old_locus_tag=CFSAN001082_06913
NZ_APAH01000130.1	Protein Homology	CDS	26046	26840	.	+	0	ID=cds-WP_000816247.1;Parent=gene-CFSAN001082_RS30855;Dbxref=GenBank:WP_000816247.1;Name=WP_000816247.1;Ontology_term=GO:0006231,GO:0004799;gbkey=CDS;gene=thyA;go_function=thymidylate synthase activity|0004799||IEA;go_process=dTMP biosynthetic process|0006231||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123418.1;locus_tag=CFSAN001082_RS30855;product=thymidylate synthase;protein_id=WP_000816247.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	27025	27495	.	+	.	ID=gene-CFSAN001082_RS30860;Name=CFSAN001082_RS30860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30860;old_locus_tag=CFSAN001082_06918
NZ_APAH01000130.1	Protein Homology	CDS	27025	27495	.	+	0	ID=cds-WP_000744665.1;Parent=gene-CFSAN001082_RS30860;Dbxref=GenBank:WP_000744665.1;Name=WP_000744665.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019077605.1;locus_tag=CFSAN001082_RS30860;product=prepilin peptidase-dependent protein;protein_id=WP_000744665.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	27486	28049	.	+	.	ID=gene-CFSAN001082_RS30865;Name=CFSAN001082_RS30865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30865;old_locus_tag=CFSAN001082_06923
NZ_APAH01000130.1	Protein Homology	CDS	27486	28049	.	+	0	ID=cds-WP_000029150.1;Parent=gene-CFSAN001082_RS30865;Dbxref=GenBank:WP_000029150.1;Name=WP_000029150.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461916.1;locus_tag=CFSAN001082_RS30865;product=prepilin peptidase-dependent protein;protein_id=WP_000029150.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	28046	28453	.	+	.	ID=gene-CFSAN001082_RS30870;Name=CFSAN001082_RS30870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30870;old_locus_tag=CFSAN001082_06928
NZ_APAH01000130.1	Protein Homology	CDS	28046	28453	.	+	0	ID=cds-WP_023194896.1;Parent=gene-CFSAN001082_RS30870;Dbxref=GenBank:WP_023194896.1;Name=WP_023194896.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461915.1;locus_tag=CFSAN001082_RS30870;product=DUF2509 family protein;protein_id=WP_023194896.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	28438	28758	.	+	.	ID=gene-CFSAN001082_RS30875;Name=CFSAN001082_RS30875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30875;old_locus_tag=CFSAN001082_06933
NZ_APAH01000130.1	Protein Homology	CDS	28438	28758	.	+	0	ID=cds-WP_000019294.1;Parent=gene-CFSAN001082_RS30875;Dbxref=GenBank:WP_000019294.1;Name=WP_000019294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461914.1;locus_tag=CFSAN001082_RS30875;product=prepilin-type N-terminal cleavage/methylation domain-containing protein;protein_id=WP_000019294.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	28774	32145	.	+	.	ID=gene-CFSAN001082_RS30880;Name=recC;gbkey=Gene;gene=recC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30880;old_locus_tag=CFSAN001082_06938
NZ_APAH01000130.1	Protein Homology	CDS	28774	32145	.	+	0	ID=cds-WP_023254065.1;Parent=gene-CFSAN001082_RS30880;Dbxref=GenBank:WP_023254065.1;Name=WP_023254065.1;Ontology_term=GO:0008854,GO:0009338;gbkey=CDS;gene=recC;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461913.2;locus_tag=CFSAN001082_RS30880;product=exodeoxyribonuclease V subunit gamma;protein_id=WP_023254065.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	32323	35211	.	+	.	ID=gene-CFSAN001082_RS30885;Name=ptrA;gbkey=Gene;gene=ptrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30885;old_locus_tag=CFSAN001082_06943
NZ_APAH01000130.1	Protein Homology	CDS	32323	35211	.	+	0	ID=cds-WP_023254066.1;Parent=gene-CFSAN001082_RS30885;Dbxref=GenBank:WP_023254066.1;Name=WP_023254066.1;Ontology_term=GO:0006508,GO:0004222,GO:0046872;gbkey=CDS;gene=ptrA;go_function=metalloendopeptidase activity|0004222||IEA,metal ion binding|0046872||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461912.1;locus_tag=CFSAN001082_RS30885;product=pitrilysin;protein_id=WP_023254066.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	35204	38749	.	+	.	ID=gene-CFSAN001082_RS30890;Name=recB;gbkey=Gene;gene=recB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30890;old_locus_tag=CFSAN001082_06948
NZ_APAH01000130.1	Protein Homology	CDS	35204	38749	.	+	0	ID=cds-WP_023254067.1;Parent=gene-CFSAN001082_RS30890;Dbxref=GenBank:WP_023254067.1;Name=WP_023254067.1;Ontology_term=GO:0006281,GO:0003677,GO:0003678,GO:0005524,GO:0008854;gbkey=CDS;gene=recB;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461911.1;locus_tag=CFSAN001082_RS30890;product=exodeoxyribonuclease V subunit beta;protein_id=WP_023254067.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	38746	40581	.	+	.	ID=gene-CFSAN001082_RS30895;Name=recD;gbkey=Gene;gene=recD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30895;old_locus_tag=CFSAN001082_06953
NZ_APAH01000130.1	Protein Homology	CDS	38746	40581	.	+	0	ID=cds-WP_001660909.1;Parent=gene-CFSAN001082_RS30895;Dbxref=GenBank:WP_001660909.1;Name=WP_001660909.1;Ontology_term=GO:0006302,GO:0006310,GO:0004386,GO:0008854,GO:0009338;gbkey=CDS;gene=recD;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=helicase activity|0004386||IEA,exodeoxyribonuclease V activity|0008854||IEA;go_process=double-strand break repair|0006302||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461910.1;locus_tag=CFSAN001082_RS30895;product=exodeoxyribonuclease V subunit alpha;protein_id=WP_001660909.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	40683	42014	.	-	.	ID=gene-CFSAN001082_RS30900;Name=argA;gbkey=Gene;gene=argA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30900;old_locus_tag=CFSAN001082_06958
NZ_APAH01000130.1	Protein Homology	CDS	40683	42014	.	-	0	ID=cds-WP_023202658.1;Parent=gene-CFSAN001082_RS30900;Dbxref=GenBank:WP_023202658.1;Name=WP_023202658.1;Ontology_term=GO:0006526,GO:0004042;gbkey=CDS;gene=argA;go_function=L-glutamate N-acetyltransferase activity|0004042||IEA;go_process=L-arginine biosynthetic process|0006526||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461909.1;locus_tag=CFSAN001082_RS30900;product=amino-acid N-acetyltransferase;protein_id=WP_023202658.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	42247	43500	.	+	.	ID=gene-CFSAN001082_RS30905;Name=amiC;gbkey=Gene;gene=amiC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30905;old_locus_tag=CFSAN001082_06963
NZ_APAH01000130.1	Protein Homology	CDS	42247	43500	.	+	0	ID=cds-WP_000011919.1;Parent=gene-CFSAN001082_RS30905;Dbxref=GenBank:WP_000011919.1;Name=WP_000011919.1;Note=Like AmiA%2C dependent on TAT (Twin-Arginine Translocation) system for export.;gbkey=CDS;gene=amiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461908.1;locus_tag=CFSAN001082_RS30905;product=N-acetylmuramoyl-L-alanine amidase AmiC;protein_id=WP_000011919.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	43610	43686	.	-	.	ID=gene-CFSAN001082_RS30910;Name=CFSAN001082_RS30910;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS30910;old_locus_tag=CFSAN001082_t07040
NZ_APAH01000130.1	tRNAscan-SE	tRNA	43610	43686	.	-	.	ID=rna-CFSAN001082_RS30910;Parent=gene-CFSAN001082_RS30910;anticodon=(pos:complement(43650..43652));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS30910;product=tRNA-Met
NZ_APAH01000130.1	tRNAscan-SE	exon	43610	43686	.	-	.	ID=exon-CFSAN001082_RS30910-1;Parent=rna-CFSAN001082_RS30910;anticodon=(pos:complement(43650..43652));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS30910;product=tRNA-Met
NZ_APAH01000130.1	RefSeq	gene	43716	43792	.	-	.	ID=gene-CFSAN001082_RS30915;Name=CFSAN001082_RS30915;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS30915;old_locus_tag=CFSAN001082_t07042
NZ_APAH01000130.1	tRNAscan-SE	tRNA	43716	43792	.	-	.	ID=rna-CFSAN001082_RS30915;Parent=gene-CFSAN001082_RS30915;anticodon=(pos:complement(43756..43758));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS30915;product=tRNA-Met
NZ_APAH01000130.1	tRNAscan-SE	exon	43716	43792	.	-	.	ID=exon-CFSAN001082_RS30915-1;Parent=rna-CFSAN001082_RS30915;anticodon=(pos:complement(43756..43758));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS30915;product=tRNA-Met
NZ_APAH01000130.1	RefSeq	gene	44000	45097	.	+	.	ID=gene-CFSAN001082_RS30920;Name=mltA;gbkey=Gene;gene=mltA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30920;old_locus_tag=CFSAN001082_06968
NZ_APAH01000130.1	Protein Homology	CDS	44000	45097	.	+	0	ID=cds-WP_000678626.1;Parent=gene-CFSAN001082_RS30920;Dbxref=GenBank:WP_000678626.1;Name=WP_000678626.1;Ontology_term=GO:0009254,GO:0004553,GO:0019867;gbkey=CDS;gene=mltA;go_component=outer membrane|0019867||IEA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=peptidoglycan turnover|0009254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008785702.1;locus_tag=CFSAN001082_RS30920;product=murein transglycosylase A;protein_id=WP_000678626.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	45207	46013	.	+	.	ID=gene-CFSAN001082_RS30925;Name=tcdA;gbkey=Gene;gene=tcdA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30925;old_locus_tag=CFSAN001082_06973
NZ_APAH01000130.1	Protein Homology	CDS	45207	46013	.	+	0	ID=cds-WP_000117750.1;Parent=gene-CFSAN001082_RS30925;Dbxref=GenBank:WP_000117750.1;Name=WP_000117750.1;Ontology_term=GO:0008641;gbkey=CDS;gene=tcdA;go_function=ubiquitin-like modifier activating enzyme activity|0008641||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461906.1;locus_tag=CFSAN001082_RS30925;product=tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA;protein_id=WP_000117750.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	46065	46952	.	-	.	ID=gene-CFSAN001082_RS30930;Name=rarD;gbkey=Gene;gene=rarD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30930;old_locus_tag=CFSAN001082_06978
NZ_APAH01000130.1	Protein Homology	CDS	46065	46952	.	-	0	ID=cds-WP_014343890.1;Parent=gene-CFSAN001082_RS30930;Dbxref=GenBank:WP_014343890.1;Name=WP_014343890.1;Ontology_term=GO:0006810,GO:0005215,GO:0005886;gbkey=CDS;gene=rarD;go_component=plasma membrane|0005886||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461905.3;locus_tag=CFSAN001082_RS30930;product=EamA family transporter RarD;protein_id=WP_014343890.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	47252	47695	.	-	.	ID=gene-CFSAN001082_RS30935;Name=csdE;gbkey=Gene;gene=csdE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30935;old_locus_tag=CFSAN001082_06983
NZ_APAH01000130.1	Protein Homology	CDS	47252	47695	.	-	0	ID=cds-WP_000184199.1;Parent=gene-CFSAN001082_RS30935;Dbxref=GenBank:WP_000184199.1;Name=WP_000184199.1;gbkey=CDS;gene=csdE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000184199.1;locus_tag=CFSAN001082_RS30935;product=cysteine desulfurase sulfur acceptor subunit CsdE;protein_id=WP_000184199.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	47695	48900	.	-	.	ID=gene-CFSAN001082_RS30940;Name=csdA;gbkey=Gene;gene=csdA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30940;old_locus_tag=CFSAN001082_06988
NZ_APAH01000130.1	Protein Homology	CDS	47695	48900	.	-	0	ID=cds-WP_023254068.1;Parent=gene-CFSAN001082_RS30940;Dbxref=GenBank:WP_023254068.1;Name=WP_023254068.1;Ontology_term=GO:0006534,GO:0016226,GO:0030170,GO:0031071;gbkey=CDS;gene=csdA;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine desulfurase activity|0031071||IEA;go_process=cysteine metabolic process|0006534||IEA,iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461903.1;locus_tag=CFSAN001082_RS30940;product=cysteine desulfurase CsdA;protein_id=WP_023254068.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	49093	49320	.	+	.	ID=gene-CFSAN001082_RS30945;Name=CFSAN001082_RS30945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30945;old_locus_tag=CFSAN001082_06993
NZ_APAH01000130.1	Protein Homology	CDS	49093	49320	.	+	0	ID=cds-WP_000750393.1;Parent=gene-CFSAN001082_RS30945;Dbxref=GenBank:WP_000750393.1;Name=WP_000750393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461902.1;locus_tag=CFSAN001082_RS30945;product=YgdI/YgdR family lipoprotein;protein_id=WP_000750393.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	49667	50584	.	+	.	ID=gene-CFSAN001082_RS30950;Name=gcvA;gbkey=Gene;gene=gcvA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30950;old_locus_tag=CFSAN001082_06998
NZ_APAH01000130.1	Protein Homology	CDS	49667	50584	.	+	0	ID=cds-WP_000044409.1;Parent=gene-CFSAN001082_RS30950;Dbxref=GenBank:WP_000044409.1;Name=WP_000044409.1;gbkey=CDS;gene=gcvA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130970.1;locus_tag=CFSAN001082_RS30950;product=glycine cleavage system transcriptional regulator GcvA;protein_id=WP_000044409.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	50603	50998	.	+	.	ID=gene-CFSAN001082_RS30955;Name=CFSAN001082_RS30955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30955;old_locus_tag=CFSAN001082_07003
NZ_APAH01000130.1	Protein Homology	CDS	50603	50998	.	+	0	ID=cds-WP_000203913.1;Parent=gene-CFSAN001082_RS30955;Dbxref=GenBank:WP_000203913.1;Name=WP_000203913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461900.1;locus_tag=CFSAN001082_RS30955;product=DUF423 domain-containing protein;protein_id=WP_000203913.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	50991	52091	.	+	.	ID=gene-CFSAN001082_RS30960;Name=rlmM;gbkey=Gene;gene=rlmM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30960;old_locus_tag=CFSAN001082_07008
NZ_APAH01000130.1	Protein Homology	CDS	50991	52091	.	+	0	ID=cds-WP_001045494.1;Parent=gene-CFSAN001082_RS30960;Dbxref=GenBank:WP_001045494.1;Name=WP_001045494.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rlmM;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010435097.1;locus_tag=CFSAN001082_RS30960;product=23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM;protein_id=WP_001045494.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	52150	52860	.	-	.	ID=gene-CFSAN001082_RS30965;Name=fucR;gbkey=Gene;gene=fucR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30965;old_locus_tag=CFSAN001082_07013
NZ_APAH01000130.1	Protein Homology	CDS	52150	52860	.	-	0	ID=cds-WP_000642330.1;Parent=gene-CFSAN001082_RS30965;Dbxref=GenBank:WP_000642330.1;Name=WP_000642330.1;gbkey=CDS;gene=fucR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461898.1;locus_tag=CFSAN001082_RS30965;product=L-fucose operon activator;protein_id=WP_000642330.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	52918	53340	.	-	.	ID=gene-CFSAN001082_RS30970;Name=fucU;gbkey=Gene;gene=fucU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30970;old_locus_tag=CFSAN001082_07018
NZ_APAH01000130.1	Protein Homology	CDS	52918	53340	.	-	0	ID=cds-WP_000920848.1;Parent=gene-CFSAN001082_RS30970;Dbxref=GenBank:WP_000920848.1;Name=WP_000920848.1;Ontology_term=GO:0042354,GO:0016854,GO:0042806;gbkey=CDS;gene=fucU;go_function=racemase and epimerase activity|0016854||IEA,fucose binding|0042806||IEA;go_process=L-fucose metabolic process|0042354||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461897.1;locus_tag=CFSAN001082_RS30970;product=L-fucose mutarotase;protein_id=WP_000920848.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	53342	54760	.	-	.	ID=gene-CFSAN001082_RS30975;Name=fucK;gbkey=Gene;gene=fucK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30975;old_locus_tag=CFSAN001082_07023
NZ_APAH01000130.1	Protein Homology	CDS	53342	54760	.	-	0	ID=cds-WP_000806780.1;Parent=gene-CFSAN001082_RS30975;Dbxref=GenBank:WP_000806780.1;Name=WP_000806780.1;Ontology_term=GO:0042355,GO:0008737;gbkey=CDS;gene=fucK;go_function=L-fuculokinase activity|0008737||IEA;go_process=L-fucose catabolic process|0042355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461896.1;locus_tag=CFSAN001082_RS30975;product=L-fuculokinase;protein_id=WP_000806780.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	54861	56636	.	-	.	ID=gene-CFSAN001082_RS30980;Name=fucI;gbkey=Gene;gene=fucI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30980;old_locus_tag=CFSAN001082_07028
NZ_APAH01000130.1	Protein Homology	CDS	54861	56636	.	-	0	ID=cds-WP_000724131.1;Parent=gene-CFSAN001082_RS30980;Dbxref=GenBank:WP_000724131.1;Name=WP_000724131.1;Ontology_term=GO:0019317,GO:0008736,GO:0030145,GO:0005737;gbkey=CDS;gene=fucI;go_component=cytoplasm|0005737||IEA;go_function=L-fucose isomerase activity|0008736||IEA,manganese ion binding|0030145||IEA;go_process=fucose catabolic process|0019317||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461895.1;locus_tag=CFSAN001082_RS30980;product=L-fucose isomerase;protein_id=WP_000724131.1;transl_table=11
NZ_APAH01000130.1	RefSeq	gene	56668	57984	.	-	.	ID=gene-CFSAN001082_RS30985;Name=fucP;gbkey=Gene;gene=fucP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30985;old_locus_tag=CFSAN001082_07033
NZ_APAH01000130.1	Protein Homology	CDS	56668	57984	.	-	0	ID=cds-WP_023254069.1;Parent=gene-CFSAN001082_RS30985;Dbxref=GenBank:WP_023254069.1;Name=WP_023254069.1;Ontology_term=GO:0015756,GO:0015150;gbkey=CDS;gene=fucP;go_function=fucose transmembrane transporter activity|0015150||IEA;go_process=fucose transmembrane transport|0015756||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417281.1;locus_tag=CFSAN001082_RS30985;product=L-fucose:H+ symporter permease;protein_id=WP_023254069.1;transl_table=11
##sequence-region NZ_APAH01000131.1 1 10734
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000131.1	RefSeq	region	1	10734	.	+	.	ID=NZ_APAH01000131.1:1..10734;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000131.1	RefSeq	gene	101	463	.	+	.	ID=gene-CFSAN001082_RS30990;Name=CFSAN001082_RS30990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30990;old_locus_tag=CFSAN001082_07042
NZ_APAH01000131.1	Protein Homology	CDS	101	463	.	+	0	ID=cds-WP_001537781.1;Parent=gene-CFSAN001082_RS30990;Dbxref=GenBank:WP_001537781.1;Name=WP_001537781.1;Ontology_term=GO:0043856,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=anti-sigma factor antagonist activity|0043856||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460083.1;locus_tag=CFSAN001082_RS30990;product=anti-adapter protein IraM;protein_id=WP_001537781.1;transl_table=11
NZ_APAH01000131.1	RefSeq	gene	871	1809	.	-	.	ID=gene-CFSAN001082_RS30995;Name=CFSAN001082_RS30995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS30995;old_locus_tag=CFSAN001082_07047
NZ_APAH01000131.1	Protein Homology	CDS	871	1809	.	-	0	ID=cds-WP_000976557.1;Parent=gene-CFSAN001082_RS30995;Dbxref=GenBank:WP_000976557.1;Name=WP_000976557.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460082.1;locus_tag=CFSAN001082_RS30995;product=MBL fold metallo-hydrolase;protein_id=WP_000976557.1;transl_table=11
NZ_APAH01000131.1	RefSeq	gene	1823	2719	.	-	.	ID=gene-CFSAN001082_RS31000;Name=hpaA;gbkey=Gene;gene=hpaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31000;old_locus_tag=CFSAN001082_07052
NZ_APAH01000131.1	Protein Homology	CDS	1823	2719	.	-	0	ID=cds-WP_000336602.1;Parent=gene-CFSAN001082_RS31000;Dbxref=GenBank:WP_000336602.1;Name=WP_000336602.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=hpaA;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460081.1;locus_tag=CFSAN001082_RS31000;product=4-hydroxyphenylacetate catabolism regulatory protein HpaA;protein_id=WP_000336602.1;transl_table=11
NZ_APAH01000131.1	RefSeq	gene	2729	4105	.	-	.	ID=gene-CFSAN001082_RS31005;Name=hpaX;gbkey=Gene;gene=hpaX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31005;old_locus_tag=CFSAN001082_07057
NZ_APAH01000131.1	Protein Homology	CDS	2729	4105	.	-	0	ID=cds-WP_001285795.1;Parent=gene-CFSAN001082_RS31005;Dbxref=GenBank:WP_001285795.1;Name=WP_001285795.1;Ontology_term=GO:1900754,GO:1901241;gbkey=CDS;gene=hpaX;go_function=4-hydroxyphenylacetate transmembrane transporter activity|1901241||IEA;go_process=4-hydroxyphenylacetate transport|1900754||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460080.1;locus_tag=CFSAN001082_RS31005;product=4-hydroxyphenylacetate permease;protein_id=WP_001285795.1;transl_table=11
NZ_APAH01000131.1	RefSeq	gene	4177	4968	.	-	.	ID=gene-CFSAN001082_RS31010;Name=hpaI;gbkey=Gene;gene=hpaI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31010;old_locus_tag=CFSAN001082_07062
NZ_APAH01000131.1	Protein Homology	CDS	4177	4968	.	-	0	ID=cds-WP_000785061.1;Parent=gene-CFSAN001082_RS31010;Dbxref=GenBank:WP_000785061.1;Name=WP_000785061.1;Ontology_term=GO:0010124;gbkey=CDS;gene=hpaI;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460079.1;locus_tag=CFSAN001082_RS31010;product=4-hydroxy-2-oxoheptanedioate aldolase;protein_id=WP_000785061.1;transl_table=11
NZ_APAH01000131.1	RefSeq	gene	4979	5782	.	-	.	ID=gene-CFSAN001082_RS31015;Name=hpaH;gbkey=Gene;gene=hpaH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31015;old_locus_tag=CFSAN001082_07067
NZ_APAH01000131.1	Protein Homology	CDS	4979	5782	.	-	0	ID=cds-WP_000884795.1;Parent=gene-CFSAN001082_RS31015;Dbxref=GenBank:WP_000884795.1;Name=WP_000884795.1;Ontology_term=GO:0009056,GO:0018817;gbkey=CDS;gene=hpaH;go_function=2-oxo-hept-3-ene-1%2C7-dioate hydratase activity|0018817||IEA;go_process=catabolic process|0009056||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460078.1;locus_tag=CFSAN001082_RS31015;product=2-oxo-hept-4-ene-1%2C7-dioate hydratase;protein_id=WP_000884795.1;transl_table=11
NZ_APAH01000131.1	RefSeq	gene	5926	6306	.	-	.	ID=gene-CFSAN001082_RS31020;Name=CFSAN001082_RS31020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31020;old_locus_tag=CFSAN001082_07072
NZ_APAH01000131.1	Protein Homology	CDS	5926	6306	.	-	0	ID=cds-WP_001119857.1;Parent=gene-CFSAN001082_RS31020;Dbxref=GenBank:WP_001119857.1;Name=WP_001119857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460077.1;locus_tag=CFSAN001082_RS31020;product=5-carboxymethyl-2-hydroxymuconate Delta-isomerase;protein_id=WP_001119857.1;transl_table=11
NZ_APAH01000131.1	RefSeq	gene	6316	7167	.	-	.	ID=gene-CFSAN001082_RS31025;Name=hpaD;gbkey=Gene;gene=hpaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31025;old_locus_tag=CFSAN001082_07077
NZ_APAH01000131.1	Protein Homology	CDS	6316	7167	.	-	0	ID=cds-WP_000516978.1;Parent=gene-CFSAN001082_RS31025;Dbxref=GenBank:WP_000516978.1;Name=WP_000516978.1;Ontology_term=GO:0008152,GO:0008198,GO:0008687;gbkey=CDS;gene=hpaD;go_function=ferrous iron binding|0008198||IEA,3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase activity|0008687||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460076.1;locus_tag=CFSAN001082_RS31025;product=3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase;protein_id=WP_000516978.1;transl_table=11
NZ_APAH01000131.1	RefSeq	gene	7169	8635	.	-	.	ID=gene-CFSAN001082_RS31030;Name=hpaE;gbkey=Gene;gene=hpaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31030;old_locus_tag=CFSAN001082_07082
NZ_APAH01000131.1	Protein Homology	CDS	7169	8635	.	-	0	ID=cds-WP_023254070.1;Parent=gene-CFSAN001082_RS31030;Dbxref=GenBank:WP_023254070.1;Name=WP_023254070.1;Ontology_term=GO:1901023,GO:0018480;gbkey=CDS;gene=hpaE;go_function=5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity|0018480||IEA;go_process=4-hydroxyphenylacetate catabolic process|1901023||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460075.1;locus_tag=CFSAN001082_RS31030;product=5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase;protein_id=WP_023254070.1;transl_table=11
NZ_APAH01000131.1	RefSeq	gene	8632	9921	.	-	.	ID=gene-CFSAN001082_RS31035;Name=hpaG;gbkey=Gene;gene=hpaG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31035;old_locus_tag=CFSAN001082_07087
NZ_APAH01000131.1	Protein Homology	CDS	8632	9921	.	-	0	ID=cds-WP_000679210.1;Parent=gene-CFSAN001082_RS31035;Dbxref=GenBank:WP_000679210.1;Name=WP_000679210.1;Ontology_term=GO:1901023,GO:0008704,GO:0018800;gbkey=CDS;gene=hpaG;go_function=5-carboxymethyl-2-hydroxymuconate delta-isomerase activity|0008704||IEA,5-oxopent-3-ene-1%2C2%2C5-tricarboxylate decarboxylase activity|0018800||IEA;go_process=4-hydroxyphenylacetate catabolic process|1901023||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460074.1;locus_tag=CFSAN001082_RS31035;product=4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase;protein_id=WP_000679210.1;transl_table=11
NZ_APAH01000131.1	RefSeq	gene	10196	10636	.	+	.	ID=gene-CFSAN001082_RS31040;Name=hpaR;gbkey=Gene;gene=hpaR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31040;old_locus_tag=CFSAN001082_07092
NZ_APAH01000131.1	Protein Homology	CDS	10196	10636	.	+	0	ID=cds-WP_000543922.1;Parent=gene-CFSAN001082_RS31040;Dbxref=GenBank:WP_000543922.1;Name=WP_000543922.1;Ontology_term=GO:0045892,GO:0003677,GO:0003700;gbkey=CDS;gene=hpaR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460073.1;locus_tag=CFSAN001082_RS31040;product=homoprotocatechuate degradation operon regulator HpaR;protein_id=WP_000543922.1;transl_table=11
##sequence-region NZ_APAH01000132.1 1 25962
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000132.1	RefSeq	region	1	25962	.	+	.	ID=NZ_APAH01000132.1:1..25962;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000132.1	RefSeq	gene	87	788	.	-	.	ID=gene-CFSAN001082_RS31045;Name=fre;gbkey=Gene;gene=fre;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31045;old_locus_tag=CFSAN001082_07097
NZ_APAH01000132.1	Protein Homology	CDS	87	788	.	-	0	ID=cds-WP_000209836.1;Parent=gene-CFSAN001082_RS31045;Dbxref=GenBank:WP_000209836.1;Name=WP_000209836.1;Ontology_term=GO:0016491;gbkey=CDS;gene=fre;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462864.1;locus_tag=CFSAN001082_RS31045;product=NAD(P)H-flavin reductase;protein_id=WP_000209836.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	872	2350	.	-	.	ID=gene-CFSAN001082_RS31050;Name=ubiD;gbkey=Gene;gene=ubiD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31050;old_locus_tag=CFSAN001082_07102
NZ_APAH01000132.1	Protein Homology	CDS	872	2350	.	-	0	ID=cds-WP_024150261.1;Parent=gene-CFSAN001082_RS31050;Dbxref=GenBank:WP_024150261.1;Name=WP_024150261.1;Ontology_term=GO:0016831;gbkey=CDS;gene=ubiD;go_function=carboxy-lyase activity|0016831||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462863.1;locus_tag=CFSAN001082_RS31050;product=4-hydroxy-3-polyprenylbenzoate decarboxylase;protein_id=WP_024150261.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	2536	3024	.	+	.	ID=gene-CFSAN001082_RS31055;Name=rfaH;gbkey=Gene;gene=rfaH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31055;old_locus_tag=CFSAN001082_07107
NZ_APAH01000132.1	Protein Homology	CDS	2536	3024	.	+	0	ID=cds-WP_001192410.1;Parent=gene-CFSAN001082_RS31055;Dbxref=GenBank:WP_001192410.1;Name=WP_001192410.1;Ontology_term=GO:0006355;gbkey=CDS;gene=rfaH;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462862.1;locus_tag=CFSAN001082_RS31055;product=transcription/translation regulatory transformer protein RfaH;protein_id=WP_001192410.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	3032	3814	.	-	.	ID=gene-CFSAN001082_RS31060;Name=tatD;gbkey=Gene;gene=tatD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31060;old_locus_tag=CFSAN001082_07112
NZ_APAH01000132.1	Protein Homology	CDS	3032	3814	.	-	0	ID=cds-WP_000459637.1;Parent=gene-CFSAN001082_RS31060;Dbxref=GenBank:WP_000459637.1;Name=WP_000459637.1;Ontology_term=GO:0008408;gbkey=CDS;gene=tatD;go_function=3'-5' exonuclease activity|0008408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462861.3;locus_tag=CFSAN001082_RS31060;product=3'-5' ssDNA/RNA exonuclease TatD;protein_id=WP_000459637.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	3856	4635	.	-	.	ID=gene-CFSAN001082_RS31065;Name=tatC;gbkey=Gene;gene=tatC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31065;old_locus_tag=CFSAN001082_07117
NZ_APAH01000132.1	Protein Homology	CDS	3856	4635	.	-	0	ID=cds-WP_000257554.1;Parent=gene-CFSAN001082_RS31065;Dbxref=GenBank:WP_000257554.1;Name=WP_000257554.1;gbkey=CDS;gene=tatC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462860.1;locus_tag=CFSAN001082_RS31065;product=Sec-independent protein translocase subunit TatC;protein_id=WP_000257554.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	4638	5186	.	-	.	ID=gene-CFSAN001082_RS31070;Name=tatB;gbkey=Gene;gene=tatB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31070;old_locus_tag=CFSAN001082_07122
NZ_APAH01000132.1	Protein Homology	CDS	4638	5186	.	-	0	ID=cds-WP_000459612.1;Parent=gene-CFSAN001082_RS31070;Dbxref=GenBank:WP_000459612.1;Name=WP_000459612.1;Ontology_term=GO:0015628,GO:0008320,GO:0016020;gbkey=CDS;gene=tatB;go_component=membrane|0016020||IEA;go_function=protein transmembrane transporter activity|0008320||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462859.1;locus_tag=CFSAN001082_RS31070;product=Sec-independent protein translocase protein TatB;protein_id=WP_000459612.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	5190	5444	.	-	.	ID=gene-CFSAN001082_RS31075;Name=tatA;gbkey=Gene;gene=tatA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31075;old_locus_tag=CFSAN001082_07127
NZ_APAH01000132.1	Protein Homology	CDS	5190	5444	.	-	0	ID=cds-WP_000508972.1;Parent=gene-CFSAN001082_RS31075;Dbxref=GenBank:WP_000508972.1;Name=WP_000508972.1;gbkey=CDS;gene=tatA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462858.1;locus_tag=CFSAN001082_RS31075;product=Sec-independent protein translocase subunit TatA;protein_id=WP_000508972.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	5650	7290	.	-	.	ID=gene-CFSAN001082_RS31080;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31080;old_locus_tag=CFSAN001082_07132
NZ_APAH01000132.1	Protein Homology	CDS	5650	7290	.	-	0	ID=cds-WP_000187559.1;Parent=gene-CFSAN001082_RS31080;Dbxref=GenBank:WP_000187559.1;Name=WP_000187559.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiB;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462857.1;locus_tag=CFSAN001082_RS31080;product=ubiquinone biosynthesis regulatory protein kinase UbiB;protein_id=WP_000187559.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	7287	7892	.	-	.	ID=gene-CFSAN001082_RS31085;Name=ubiJ;gbkey=Gene;gene=ubiJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31085;old_locus_tag=CFSAN001082_07137
NZ_APAH01000132.1	Protein Homology	CDS	7287	7892	.	-	0	ID=cds-WP_001116093.1;Parent=gene-CFSAN001082_RS31085;Dbxref=GenBank:WP_001116093.1;Name=WP_001116093.1;Ontology_term=GO:0032150;gbkey=CDS;gene=ubiJ;go_process=ubiquinone biosynthetic process from chorismate|0032150||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462856.1;locus_tag=CFSAN001082_RS31085;product=ubiquinone biosynthesis protein UbiJ;protein_id=WP_001116093.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	7902	8657	.	-	.	ID=gene-CFSAN001082_RS31090;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31090;old_locus_tag=CFSAN001082_07142
NZ_APAH01000132.1	Protein Homology	CDS	7902	8657	.	-	0	ID=cds-WP_000229009.1;Parent=gene-CFSAN001082_RS31090;Dbxref=GenBank:WP_000229009.1;Name=WP_000229009.1;Ontology_term=GO:0008168;gbkey=CDS;gene=ubiE;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462855.1;locus_tag=CFSAN001082_RS31090;product=bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1%2C4-benzoquinol methylase UbiE;protein_id=WP_000229009.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	8753	10183	.	-	.	ID=gene-CFSAN001082_RS31095;Name=rmuC;gbkey=Gene;gene=rmuC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31095;old_locus_tag=CFSAN001082_07147
NZ_APAH01000132.1	Protein Homology	CDS	8753	10183	.	-	0	ID=cds-WP_000355567.1;Parent=gene-CFSAN001082_RS31095;Dbxref=GenBank:WP_000355567.1;Name=WP_000355567.1;gbkey=CDS;gene=rmuC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462854.1;locus_tag=CFSAN001082_RS31095;product=DNA recombination protein RmuC;protein_id=WP_000355567.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	10323	11084	.	-	.	ID=gene-CFSAN001082_RS31100;Name=udp;gbkey=Gene;gene=udp;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31100;old_locus_tag=CFSAN001082_07152
NZ_APAH01000132.1	Protein Homology	CDS	10323	11084	.	-	0	ID=cds-WP_000045169.1;Parent=gene-CFSAN001082_RS31100;Dbxref=GenBank:WP_000045169.1;Name=WP_000045169.1;Ontology_term=GO:0009116,GO:0016763;gbkey=CDS;gene=udp;go_function=pentosyltransferase activity|0016763||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462853.1;locus_tag=CFSAN001082_RS31100;product=uridine phosphorylase;protein_id=WP_000045169.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	11343	12155	.	+	.	ID=gene-CFSAN001082_RS31105;Name=CFSAN001082_RS31105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31105;old_locus_tag=CFSAN001082_07157
NZ_APAH01000132.1	Protein Homology	CDS	11343	12155	.	+	0	ID=cds-WP_000213959.1;Parent=gene-CFSAN001082_RS31105;Dbxref=GenBank:WP_000213959.1;Name=WP_000213959.1;Ontology_term=GO:0016787,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462852.1;locus_tag=CFSAN001082_RS31105;product=dienelactone hydrolase family protein;protein_id=WP_000213959.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	12235	13578	.	-	.	ID=gene-CFSAN001082_RS31110;Name=CFSAN001082_RS31110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31110;old_locus_tag=CFSAN001082_07162
NZ_APAH01000132.1	Protein Homology	CDS	12235	13578	.	-	0	ID=cds-WP_023254072.1;Parent=gene-CFSAN001082_RS31110;Dbxref=GenBank:WP_023254072.1;Name=WP_023254072.1;Ontology_term=GO:0018209,GO:0046500,GO:0016491,GO:0051539;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=peptidyl-serine modification|0018209||IEA,S-adenosylmethionine metabolic process|0046500||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462851.1;locus_tag=CFSAN001082_RS31110;product=anaerobic sulfatase maturase;protein_id=WP_023254072.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	13913	16177	.	-	.	ID=gene-CFSAN001082_RS31115;Name=metE;gbkey=Gene;gene=metE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31115;old_locus_tag=CFSAN001082_07172
NZ_APAH01000132.1	Protein Homology	CDS	13913	16177	.	-	0	ID=cds-WP_000154193.1;Parent=gene-CFSAN001082_RS31115;Dbxref=GenBank:WP_000154193.1;Name=WP_000154193.1;Ontology_term=GO:0008652,GO:0009086,GO:0003871,GO:0008270;gbkey=CDS;gene=metE;go_function=5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|0003871||IEA,zinc ion binding|0008270||IEA;go_process=amino acid biosynthetic process|0008652||IEA,methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462850.1;locus_tag=CFSAN001082_RS31115;product=5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase;protein_id=WP_000154193.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	16426	17379	.	+	.	ID=gene-CFSAN001082_RS31120;Name=metR;gbkey=Gene;gene=metR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31120;old_locus_tag=CFSAN001082_07177
NZ_APAH01000132.1	Protein Homology	CDS	16426	17379	.	+	0	ID=cds-WP_000569788.1;Parent=gene-CFSAN001082_RS31120;Dbxref=GenBank:WP_000569788.1;Name=WP_000569788.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=metR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462849.1;locus_tag=CFSAN001082_RS31120;product=HTH-type transcriptional regulator MetR;protein_id=WP_000569788.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	17267	18166	.	-	.	ID=gene-CFSAN001082_RS31125;Name=CFSAN001082_RS31125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31125;old_locus_tag=CFSAN001082_07182
NZ_APAH01000132.1	Protein Homology	CDS	17267	18166	.	-	0	ID=cds-WP_001196257.1;Parent=gene-CFSAN001082_RS31125;Dbxref=GenBank:WP_001196257.1;Name=WP_001196257.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462848.1;locus_tag=CFSAN001082_RS31125;product=carboxylate/amino acid/amine transporter;protein_id=WP_001196257.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	18247	19047	.	-	.	ID=gene-CFSAN001082_RS31130;Name=yigL;gbkey=Gene;gene=yigL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31130;old_locus_tag=CFSAN001082_07187
NZ_APAH01000132.1	Protein Homology	CDS	18247	19047	.	-	0	ID=cds-WP_000285338.1;Parent=gene-CFSAN001082_RS31130;Dbxref=GenBank:WP_000285338.1;Name=WP_000285338.1;gbkey=CDS;gene=yigL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462847.1;locus_tag=CFSAN001082_RS31130;product=sugar/pyridoxal phosphate phosphatase YigL;protein_id=WP_000285338.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	19063	20079	.	-	.	ID=gene-CFSAN001082_RS31135;Name=pldB;gbkey=Gene;gene=pldB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31135;old_locus_tag=CFSAN001082_07192
NZ_APAH01000132.1	Protein Homology	CDS	19063	20079	.	-	0	ID=cds-WP_000487685.1;Parent=gene-CFSAN001082_RS31135;Dbxref=GenBank:WP_000487685.1;Name=WP_000487685.1;gbkey=CDS;gene=pldB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462846.1;locus_tag=CFSAN001082_RS31135;product=lysophospholipase L2;protein_id=WP_000487685.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	20190	20810	.	+	.	ID=gene-CFSAN001082_RS31140;Name=rhtB;gbkey=Gene;gene=rhtB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31140;old_locus_tag=CFSAN001082_07197
NZ_APAH01000132.1	Protein Homology	CDS	20190	20810	.	+	0	ID=cds-WP_023194993.1;Parent=gene-CFSAN001082_RS31140;Dbxref=GenBank:WP_023194993.1;Name=WP_023194993.1;Ontology_term=GO:0006865,GO:0016020;gbkey=CDS;gene=rhtB;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462845.1;locus_tag=CFSAN001082_RS31140;product=homoserine/homoserine lactone efflux protein;protein_id=WP_023194993.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	20850	21470	.	-	.	ID=gene-CFSAN001082_RS31145;Name=rhtC;gbkey=Gene;gene=rhtC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31145;old_locus_tag=CFSAN001082_07202
NZ_APAH01000132.1	Protein Homology	CDS	20850	21470	.	-	0	ID=cds-WP_000980080.1;Parent=gene-CFSAN001082_RS31145;Dbxref=GenBank:WP_000980080.1;Name=WP_000980080.1;Ontology_term=GO:0006865;gbkey=CDS;gene=rhtC;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462844.1;locus_tag=CFSAN001082_RS31145;product=threonine export protein RhtC;protein_id=WP_000980080.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	21534	23363	.	-	.	ID=gene-CFSAN001082_RS31150;Name=recQ;gbkey=Gene;gene=recQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31150;old_locus_tag=CFSAN001082_07207
NZ_APAH01000132.1	Protein Homology	CDS	21534	23363	.	-	0	ID=cds-WP_023194994.1;Parent=gene-CFSAN001082_RS31150;Dbxref=GenBank:WP_023194994.1;Name=WP_023194994.1;Ontology_term=GO:0006310,GO:0003678;gbkey=CDS;gene=recQ;go_function=DNA helicase activity|0003678||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026263.3;locus_tag=CFSAN001082_RS31150;product=ATP-dependent DNA helicase RecQ;protein_id=WP_023194994.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	23447	24316	.	-	.	ID=gene-CFSAN001082_RS31155;Name=pldA;gbkey=Gene;gene=pldA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31155;old_locus_tag=CFSAN001082_07212
NZ_APAH01000132.1	Protein Homology	CDS	23447	24316	.	-	0	ID=cds-WP_001201692.1;Parent=gene-CFSAN001082_RS31155;Dbxref=GenBank:WP_001201692.1;Name=WP_001201692.1;Ontology_term=GO:0006629,GO:0004620;gbkey=CDS;gene=pldA;go_function=phospholipase activity|0004620||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462842.1;locus_tag=CFSAN001082_RS31155;product=phospholipase A;protein_id=WP_001201692.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	24481	24948	.	+	.	ID=gene-CFSAN001082_RS31160;Name=yigI;gbkey=Gene;gene=yigI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31160;old_locus_tag=CFSAN001082_07217
NZ_APAH01000132.1	Protein Homology	CDS	24481	24948	.	+	0	ID=cds-WP_001277136.1;Parent=gene-CFSAN001082_RS31160;Dbxref=GenBank:WP_001277136.1;Name=WP_001277136.1;gbkey=CDS;gene=yigI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312777.2;locus_tag=CFSAN001082_RS31160;product=acyl-CoA thioesterase YigI;protein_id=WP_001277136.1;transl_table=11
NZ_APAH01000132.1	RefSeq	gene	24992	25879	.	+	.	ID=gene-CFSAN001082_RS31165;Name=rarD;gbkey=Gene;gene=rarD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31165;old_locus_tag=CFSAN001082_07222
NZ_APAH01000132.1	Protein Homology	CDS	24992	25879	.	+	0	ID=cds-WP_000339081.1;Parent=gene-CFSAN001082_RS31165;Dbxref=GenBank:WP_000339081.1;Name=WP_000339081.1;Ontology_term=GO:0016020;gbkey=CDS;gene=rarD;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000339076.1;locus_tag=CFSAN001082_RS31165;product=EamA family transporter RarD;protein_id=WP_000339081.1;transl_table=11
##sequence-region NZ_APAH01000133.1 1 353
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000133.1	RefSeq	region	1	353	.	+	.	ID=NZ_APAH01000133.1:1..353;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000133.1	RefSeq	gene	42	353	.	+	.	ID=gene-CFSAN001082_RS31170;Name=CFSAN001082_RS31170;end_range=353,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31170;old_locus_tag=CFSAN001082_07227;partial=true
NZ_APAH01000133.1	Protein Homology	CDS	42	353	.	+	0	ID=cds-WP_023254073.1;Parent=gene-CFSAN001082_RS31170;Dbxref=GenBank:WP_023254073.1;Name=WP_023254073.1;end_range=353,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459330.1;locus_tag=CFSAN001082_RS31170;partial=true;product=hypothetical protein;protein_id=WP_023254073.1;transl_table=11
##sequence-region NZ_APAH01000134.1 1 30804
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000134.1	RefSeq	region	1	30804	.	+	.	ID=NZ_APAH01000134.1:1..30804;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000134.1	RefSeq	gene	63	719	.	+	.	ID=gene-CFSAN001082_RS31175;Name=pphB;gbkey=Gene;gene=pphB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31175;old_locus_tag=CFSAN001082_07232
NZ_APAH01000134.1	Protein Homology	CDS	63	719	.	+	0	ID=cds-WP_023195213.1;Parent=gene-CFSAN001082_RS31175;Dbxref=GenBank:WP_023195213.1;Name=WP_023195213.1;gbkey=CDS;gene=pphB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461828.1;locus_tag=CFSAN001082_RS31175;product=protein-serine/threonine phosphatase;protein_id=WP_023195213.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	890	1384	.	-	.	ID=gene-CFSAN001082_RS31180;Name=CFSAN001082_RS31180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31180;old_locus_tag=CFSAN001082_07237
NZ_APAH01000134.1	Protein Homology	CDS	890	1384	.	-	0	ID=cds-WP_023254075.1;Parent=gene-CFSAN001082_RS31180;Dbxref=GenBank:WP_023254075.1;Name=WP_023254075.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001522903.1;locus_tag=CFSAN001082_RS31180;product=hypothetical protein;protein_id=WP_023254075.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	1411	2079	.	-	.	ID=gene-CFSAN001082_RS31185;Name=CFSAN001082_RS31185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31185;old_locus_tag=CFSAN001082_07242
NZ_APAH01000134.1	Protein Homology	CDS	1411	2079	.	-	0	ID=cds-WP_000445914.1;Parent=gene-CFSAN001082_RS31185;Dbxref=GenBank:WP_000445914.1;Name=WP_000445914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000445913.1;locus_tag=CFSAN001082_RS31185;product=hypothetical protein;protein_id=WP_000445914.1;transl_table=11
NZ_APAH01000134.1	RefSeq	pseudogene	2236	2454	.	-	.	ID=gene-CFSAN001082_RS46785;Name=CFSAN001082_RS46785;end_range=2454,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46785;partial=true;pseudo=true
NZ_APAH01000134.1	Protein Homology	CDS	2236	2454	.	-	0	ID=cds-CFSAN001082_RS46785;Parent=gene-CFSAN001082_RS46785;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2454,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015869530.1;locus_tag=CFSAN001082_RS46785;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000134.1	RefSeq	pseudogene	2665	3063	.	-	.	ID=gene-CFSAN001082_RS0123190;Name=CFSAN001082_RS0123190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0123190;partial=true;pseudo=true;start_range=.,2665
NZ_APAH01000134.1	Protein Homology	CDS	2665	3063	.	-	0	ID=cds-CFSAN001082_RS0123190;Parent=gene-CFSAN001082_RS0123190;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461829.1;locus_tag=CFSAN001082_RS0123190;partial=true;product=cytoplasmic protein;pseudo=true;start_range=.,2665;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	3222	5789	.	+	.	ID=gene-CFSAN001082_RS31195;Name=mutS;gbkey=Gene;gene=mutS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31195;old_locus_tag=CFSAN001082_07252
NZ_APAH01000134.1	Protein Homology	CDS	3222	5789	.	+	0	ID=cds-WP_001005802.1;Parent=gene-CFSAN001082_RS31195;Dbxref=GenBank:WP_001005802.1;Name=WP_001005802.1;Ontology_term=GO:0006298,GO:0005524,GO:0030983;gbkey=CDS;gene=mutS;go_function=ATP binding|0005524||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461830.1;locus_tag=CFSAN001082_RS31195;product=DNA mismatch repair protein MutS;protein_id=WP_001005802.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	5845	6225	.	-	.	ID=gene-CFSAN001082_RS31200;Name=CFSAN001082_RS31200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31200;old_locus_tag=CFSAN001082_07257
NZ_APAH01000134.1	Protein Homology	CDS	5845	6225	.	-	0	ID=cds-WP_023254076.1;Parent=gene-CFSAN001082_RS31200;Dbxref=GenBank:WP_023254076.1;Name=WP_023254076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461831.1;locus_tag=CFSAN001082_RS31200;product=DUF4440 domain-containing protein;protein_id=WP_023254076.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	6222	7430	.	-	.	ID=gene-CFSAN001082_RS31205;Name=CFSAN001082_RS31205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31205;old_locus_tag=CFSAN001082_07262
NZ_APAH01000134.1	Protein Homology	CDS	6222	7430	.	-	0	ID=cds-WP_023254077.1;Parent=gene-CFSAN001082_RS31205;Dbxref=GenBank:WP_023254077.1;Name=WP_023254077.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461832.1;locus_tag=CFSAN001082_RS31205;product=MFS transporter;protein_id=WP_023254077.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	7518	8450	.	+	.	ID=gene-CFSAN001082_RS31210;Name=CFSAN001082_RS31210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31210;old_locus_tag=CFSAN001082_07267
NZ_APAH01000134.1	Protein Homology	CDS	7518	8450	.	+	0	ID=cds-WP_077911136.1;Parent=gene-CFSAN001082_RS31210;Dbxref=GenBank:WP_077911136.1;Name=WP_077911136.1;Ontology_term=GO:0006355,GO:0001216,GO:0032993;gbkey=CDS;go_component=protein-DNA complex|0032993||IEA;go_function=DNA-binding transcription activator activity|0001216||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000216314.1;locus_tag=CFSAN001082_RS31210;product=LysR family transcriptional regulator;protein_id=WP_077911136.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	8492	9988	.	-	.	ID=gene-CFSAN001082_RS31215;Name=CFSAN001082_RS31215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31215;old_locus_tag=CFSAN001082_07272
NZ_APAH01000134.1	Protein Homology	CDS	8492	9988	.	-	0	ID=cds-WP_000202725.1;Parent=gene-CFSAN001082_RS31215;Dbxref=GenBank:WP_000202725.1;Name=WP_000202725.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461834.1;locus_tag=CFSAN001082_RS31215;product=GntP family permease;protein_id=WP_000202725.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	9985	10935	.	-	.	ID=gene-CFSAN001082_RS31220;Name=denD;gbkey=Gene;gene=denD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31220;old_locus_tag=CFSAN001082_07277
NZ_APAH01000134.1	Protein Homology	CDS	9985	10935	.	-	0	ID=cds-WP_001165727.1;Parent=gene-CFSAN001082_RS31220;Dbxref=GenBank:WP_001165727.1;Name=WP_001165727.1;Ontology_term=GO:0005975,GO:0016491;gbkey=CDS;gene=denD;go_function=oxidoreductase activity|0016491||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461835.1;locus_tag=CFSAN001082_RS31220;product=D-erythronate dehydrogenase;protein_id=WP_001165727.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	10975	11751	.	-	.	ID=gene-CFSAN001082_RS31225;Name=CFSAN001082_RS31225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31225;old_locus_tag=CFSAN001082_07282
NZ_APAH01000134.1	Protein Homology	CDS	10975	11751	.	-	0	ID=cds-WP_001136899.1;Parent=gene-CFSAN001082_RS31225;Dbxref=GenBank:WP_001136899.1;Name=WP_001136899.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461836.1;locus_tag=CFSAN001082_RS31225;product=HPr family phosphocarrier protein;protein_id=WP_001136899.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	11756	12394	.	-	.	ID=gene-CFSAN001082_RS31230;Name=CFSAN001082_RS31230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31230;old_locus_tag=CFSAN001082_07287
NZ_APAH01000134.1	Protein Homology	CDS	11756	12394	.	-	0	ID=cds-WP_000209068.1;Parent=gene-CFSAN001082_RS31230;Dbxref=GenBank:WP_000209068.1;Name=WP_000209068.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461837.1;locus_tag=CFSAN001082_RS31230;product=aldolase;protein_id=WP_000209068.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	12391	13653	.	-	.	ID=gene-CFSAN001082_RS31235;Name=otnK;gbkey=Gene;gene=otnK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31235;old_locus_tag=CFSAN001082_07292
NZ_APAH01000134.1	Protein Homology	CDS	12391	13653	.	-	0	ID=cds-WP_000912488.1;Parent=gene-CFSAN001082_RS31235;Dbxref=GenBank:WP_000912488.1;Name=WP_000912488.1;Ontology_term=GO:0005975,GO:0005524,GO:0016301;gbkey=CDS;gene=otnK;go_function=ATP binding|0005524||IEA,kinase activity|0016301||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461838.1;locus_tag=CFSAN001082_RS31235;product=3-oxo-tetronate kinase;protein_id=WP_000912488.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	13647	14570	.	-	.	ID=gene-CFSAN001082_RS31240;Name=ltnD;gbkey=Gene;gene=ltnD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31240;old_locus_tag=CFSAN001082_07297
NZ_APAH01000134.1	Protein Homology	CDS	13647	14570	.	-	0	ID=cds-WP_000206957.1;Parent=gene-CFSAN001082_RS31240;Dbxref=GenBank:WP_000206957.1;Name=WP_000206957.1;Ontology_term=GO:0005975,GO:0016616;gbkey=CDS;gene=ltnD;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461839.1;locus_tag=CFSAN001082_RS31240;product=L-threonate dehydrogenase;protein_id=WP_000206957.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	14767	15531	.	+	.	ID=gene-CFSAN001082_RS31245;Name=ygbI;gbkey=Gene;gene=ygbI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31245;old_locus_tag=CFSAN001082_07302
NZ_APAH01000134.1	Protein Homology	CDS	14767	15531	.	+	0	ID=cds-WP_000613179.1;Parent=gene-CFSAN001082_RS31245;Dbxref=GenBank:WP_000613179.1;Name=WP_000613179.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ygbI;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461840.1;locus_tag=CFSAN001082_RS31245;product=DNA-binding transcriptional repressor YgbI;protein_id=WP_000613179.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	15550	15954	.	-	.	ID=gene-CFSAN001082_RS31250;Name=CFSAN001082_RS31250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31250;old_locus_tag=CFSAN001082_07307
NZ_APAH01000134.1	Protein Homology	CDS	15550	15954	.	-	0	ID=cds-WP_000423338.1;Parent=gene-CFSAN001082_RS31250;Dbxref=GenBank:WP_000423338.1;Name=WP_000423338.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461841.1;locus_tag=CFSAN001082_RS31250;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_000423338.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	16125	16718	.	+	.	ID=gene-CFSAN001082_RS31255;Name=CFSAN001082_RS31255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31255;old_locus_tag=CFSAN001082_07312
NZ_APAH01000134.1	Protein Homology	CDS	16125	16718	.	+	0	ID=cds-WP_001237180.1;Parent=gene-CFSAN001082_RS31255;Dbxref=GenBank:WP_001237180.1;Name=WP_001237180.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461842.1;locus_tag=CFSAN001082_RS31255;product=non-oxidative hydroxyarylic acid decarboxylases subunit B;protein_id=WP_001237180.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	16718	18145	.	+	.	ID=gene-CFSAN001082_RS31260;Name=CFSAN001082_RS31260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31260;old_locus_tag=CFSAN001082_07317
NZ_APAH01000134.1	Protein Homology	CDS	16718	18145	.	+	0	ID=cds-WP_000863168.1;Parent=gene-CFSAN001082_RS31260;Dbxref=GenBank:WP_000863168.1;Name=WP_000863168.1;Ontology_term=GO:0016831;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461843.1;locus_tag=CFSAN001082_RS31260;product=non-oxidative hydroxyarylic acid decarboxylases subunit C;protein_id=WP_000863168.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	18156	18392	.	+	.	ID=gene-CFSAN001082_RS31265;Name=CFSAN001082_RS31265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31265;old_locus_tag=CFSAN001082_07322
NZ_APAH01000134.1	Protein Homology	CDS	18156	18392	.	+	0	ID=cds-WP_000562964.1;Parent=gene-CFSAN001082_RS31265;Dbxref=GenBank:WP_000562964.1;Name=WP_000562964.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461844.1;locus_tag=CFSAN001082_RS31265;product=non-oxidative hydroxyarylic acid decarboxylases subunit D;protein_id=WP_000562964.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	18437	19429	.	-	.	ID=gene-CFSAN001082_RS31270;Name=rpoS;gbkey=Gene;gene=rpoS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31270;old_locus_tag=CFSAN001082_07327
NZ_APAH01000134.1	Protein Homology	CDS	18437	19429	.	-	0	ID=cds-WP_000081498.1;Parent=gene-CFSAN001082_RS31270;Dbxref=GenBank:WP_000081498.1;Name=WP_000081498.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000081498.1;locus_tag=CFSAN001082_RS31270;product=RNA polymerase sigma factor RpoS;protein_id=WP_000081498.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	19492	20574	.	-	.	ID=gene-CFSAN001082_RS31275;Name=nlpD;gbkey=Gene;gene=nlpD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31275;old_locus_tag=CFSAN001082_07332
NZ_APAH01000134.1	Protein Homology	CDS	19492	20574	.	-	0	ID=cds-WP_223149274.1;Parent=gene-CFSAN001082_RS31275;Dbxref=GenBank:WP_223149274.1;Name=WP_223149274.1;gbkey=CDS;gene=nlpD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461846.1;locus_tag=CFSAN001082_RS31275;product=murein hydrolase activator NlpD;protein_id=WP_223149274.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	20504	20662	.	+	.	ID=gene-CFSAN001082_RS48780;Name=CFSAN001082_RS48780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48780
NZ_APAH01000134.1	Protein Homology	CDS	20504	20662	.	+	0	ID=cds-WP_223148970.1;Parent=gene-CFSAN001082_RS48780;Dbxref=GenBank:WP_223148970.1;Name=WP_223148970.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001541719.1;locus_tag=CFSAN001082_RS48780;product=peptidase;protein_id=WP_223148970.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	20801	21427	.	-	.	ID=gene-CFSAN001082_RS31280;Name=CFSAN001082_RS31280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31280;old_locus_tag=CFSAN001082_07337
NZ_APAH01000134.1	Protein Homology	CDS	20801	21427	.	-	0	ID=cds-WP_000253545.1;Parent=gene-CFSAN001082_RS31280;Dbxref=GenBank:WP_000253545.1;Name=WP_000253545.1;Ontology_term=GO:0036211,GO:0004719;gbkey=CDS;go_function=protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|0004719||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130872.1;locus_tag=CFSAN001082_RS31280;product=protein-L-isoaspartate(D-aspartate) O-methyltransferase;protein_id=WP_000253545.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	21421	22182	.	-	.	ID=gene-CFSAN001082_RS31285;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31285;old_locus_tag=CFSAN001082_07342
NZ_APAH01000134.1	Protein Homology	CDS	21421	22182	.	-	0	ID=cds-WP_001221538.1;Parent=gene-CFSAN001082_RS31285;Dbxref=GenBank:WP_001221538.1;Name=WP_001221538.1;Ontology_term=GO:0008252;gbkey=CDS;gene=surE;go_function=nucleotidase activity|0008252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461848.1;locus_tag=CFSAN001082_RS31285;product=5'/3'-nucleotidase SurE;protein_id=WP_001221538.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	22163	23212	.	-	.	ID=gene-CFSAN001082_RS31290;Name=truD;gbkey=Gene;gene=truD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31290;old_locus_tag=CFSAN001082_07347
NZ_APAH01000134.1	Protein Homology	CDS	22163	23212	.	-	0	ID=cds-WP_023254079.1;Parent=gene-CFSAN001082_RS31290;Dbxref=GenBank:WP_023254079.1;Name=WP_023254079.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=truD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461849.1;locus_tag=CFSAN001082_RS31290;product=tRNA pseudouridine(13) synthase TruD;protein_id=WP_023254079.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	23209	23688	.	-	.	ID=gene-CFSAN001082_RS31295;Name=ispF;gbkey=Gene;gene=ispF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31295;old_locus_tag=CFSAN001082_07352
NZ_APAH01000134.1	Protein Homology	CDS	23209	23688	.	-	0	ID=cds-WP_001219244.1;Parent=gene-CFSAN001082_RS31295;Dbxref=GenBank:WP_001219244.1;Name=WP_001219244.1;Ontology_term=GO:0019288,GO:0008685;gbkey=CDS;gene=ispF;go_function=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase activity|0008685||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461850.1;locus_tag=CFSAN001082_RS31295;product=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=WP_001219244.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	23688	24398	.	-	.	ID=gene-CFSAN001082_RS31300;Name=ispD;gbkey=Gene;gene=ispD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31300;old_locus_tag=CFSAN001082_07357
NZ_APAH01000134.1	Protein Homology	CDS	23688	24398	.	-	0	ID=cds-WP_000741649.1;Parent=gene-CFSAN001082_RS31300;Dbxref=GenBank:WP_000741649.1;Name=WP_000741649.1;Ontology_term=GO:0008299,GO:0019288,GO:0050518;gbkey=CDS;gene=ispD;go_function=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity|0050518||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA,isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461851.1;locus_tag=CFSAN001082_RS31300;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=WP_000741649.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	24417	24728	.	-	.	ID=gene-CFSAN001082_RS31305;Name=ftsB;gbkey=Gene;gene=ftsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31305;old_locus_tag=CFSAN001082_07362
NZ_APAH01000134.1	Protein Homology	CDS	24417	24728	.	-	0	ID=cds-WP_000517480.1;Parent=gene-CFSAN001082_RS31305;Dbxref=GenBank:WP_000517480.1;Name=WP_000517480.1;gbkey=CDS;gene=ftsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461852.1;locus_tag=CFSAN001082_RS31305;product=cell division protein FtsB;protein_id=WP_000517480.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	24919	25242	.	-	.	ID=gene-CFSAN001082_RS31310;Name=CFSAN001082_RS31310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31310;old_locus_tag=CFSAN001082_07367
NZ_APAH01000134.1	Protein Homology	CDS	24919	25242	.	-	0	ID=cds-WP_001537530.1;Parent=gene-CFSAN001082_RS31310;Dbxref=GenBank:WP_001537530.1;Name=WP_001537530.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001246104.1;locus_tag=CFSAN001082_RS31310;product=DUF3561 family protein;protein_id=WP_001537530.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	25293	25898	.	-	.	ID=gene-CFSAN001082_RS31315;Name=cysC;gbkey=Gene;gene=cysC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31315;old_locus_tag=CFSAN001082_07372
NZ_APAH01000134.1	Protein Homology	CDS	25293	25898	.	-	0	ID=cds-WP_023254080.1;Parent=gene-CFSAN001082_RS31315;Dbxref=GenBank:WP_023254080.1;Name=WP_023254080.1;Ontology_term=GO:0000103,GO:0004020,GO:0005524;gbkey=CDS;gene=cysC;go_function=adenylylsulfate kinase activity|0004020||IEA,ATP binding|0005524||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461854.1;locus_tag=CFSAN001082_RS31315;product=adenylyl-sulfate kinase;protein_id=WP_023254080.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	25885	27324	.	-	.	ID=gene-CFSAN001082_RS31320;Name=cysN;gbkey=Gene;gene=cysN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31320;old_locus_tag=CFSAN001082_07377
NZ_APAH01000134.1	Protein Homology	CDS	25885	27324	.	-	0	ID=cds-WP_023254081.1;Parent=gene-CFSAN001082_RS31320;Dbxref=GenBank:WP_023254081.1;Name=WP_023254081.1;Ontology_term=GO:0006790,GO:0003924,GO:0005525;gbkey=CDS;gene=cysN;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461855.1;locus_tag=CFSAN001082_RS31320;product=sulfate adenylyltransferase subunit CysN;protein_id=WP_023254081.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	27334	28242	.	-	.	ID=gene-CFSAN001082_RS31325;Name=cysD;gbkey=Gene;gene=cysD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31325;old_locus_tag=CFSAN001082_07382
NZ_APAH01000134.1	Protein Homology	CDS	27334	28242	.	-	0	ID=cds-WP_023195199.1;Parent=gene-CFSAN001082_RS31325;Dbxref=GenBank:WP_023195199.1;Name=WP_023195199.1;Ontology_term=GO:0000103,GO:0004781;gbkey=CDS;gene=cysD;go_function=sulfate adenylyltransferase (ATP) activity|0004781||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130891.1;locus_tag=CFSAN001082_RS31325;product=sulfate adenylyltransferase subunit CysD;protein_id=WP_023195199.1;transl_table=11
NZ_APAH01000134.1	RefSeq	gene	28493	29539	.	+	.	ID=gene-CFSAN001082_RS31330;Name=CFSAN001082_RS31330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31330;old_locus_tag=CFSAN001082_07387
NZ_APAH01000134.1	Protein Homology	CDS	28493	29539	.	+	0	ID=cds-WP_023254082.1;Parent=gene-CFSAN001082_RS31330;Dbxref=GenBank:WP_023254082.1;Name=WP_023254082.1;Ontology_term=GO:0008235;gbkey=CDS;go_function=metalloexopeptidase activity|0008235||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461857.1;locus_tag=CFSAN001082_RS31330;product=aminopeptidase;protein_id=WP_023254082.1;transl_table=11
NZ_APAH01000134.1	RefSeq	direct_repeat	29554	30804	.	+	.	ID=id-NZ_APAH01000134.1:29554..30804;gbkey=repeat_region;inference=COORDINATES: alignment:CRISPRCasFinder:4.3.2;rpt_family=CRISPR;rpt_type=direct;rpt_unit_range=29554..29582;rpt_unit_seq=cggtttatccccgctggcgcggggaacac
##sequence-region NZ_APAH01000135.1 1 8157
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000135.1	RefSeq	region	1	8157	.	+	.	ID=NZ_APAH01000135.1:1..8157;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000135.1	RefSeq	gene	1	1266	.	-	.	ID=gene-CFSAN001082_RS31335;Name=oadA;gbkey=Gene;gene=oadA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31335;old_locus_tag=CFSAN001082_07392;partial=true;start_range=.,1
NZ_APAH01000135.1	Protein Homology	CDS	1	1266	.	-	0	ID=cds-WP_023254083.1;Parent=gene-CFSAN001082_RS31335;Dbxref=GenBank:WP_023254083.1;Name=WP_023254083.1;Ontology_term=GO:0006814,GO:0008948,GO:0015081;gbkey=CDS;gene=oadA;go_function=oxaloacetate decarboxylase activity|0008948||IEA,sodium ion transmembrane transporter activity|0015081||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=CFSAN001082_RS31335;partial=true;product=sodium-extruding oxaloacetate decarboxylase subunit alpha;protein_id=WP_023254083.1;start_range=.,1;transl_table=11
NZ_APAH01000135.1	RefSeq	gene	1283	1525	.	-	.	ID=gene-CFSAN001082_RS31340;Name=CFSAN001082_RS31340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31340;old_locus_tag=CFSAN001082_07397
NZ_APAH01000135.1	Protein Homology	CDS	1283	1525	.	-	0	ID=cds-WP_000180122.1;Parent=gene-CFSAN001082_RS31340;Dbxref=GenBank:WP_000180122.1;Name=WP_000180122.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000128597.1;locus_tag=CFSAN001082_RS31340;product=oxaloacetate decarboxylase subunit gamma;protein_id=WP_000180122.1;transl_table=11
NZ_APAH01000135.1	RefSeq	gene	1681	2298	.	-	.	ID=gene-CFSAN001082_RS31345;Name=ttdB;gbkey=Gene;gene=ttdB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31345;old_locus_tag=CFSAN001082_07402
NZ_APAH01000135.1	Protein Homology	CDS	1681	2298	.	-	0	ID=cds-WP_000162405.1;Parent=gene-CFSAN001082_RS31345;Dbxref=GenBank:WP_000162405.1;Name=WP_000162405.1;Ontology_term=GO:0016836;gbkey=CDS;gene=ttdB;go_function=hydro-lyase activity|0016836||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462264.1;locus_tag=CFSAN001082_RS31345;product=L(+)-tartrate dehydratase subunit beta;protein_id=WP_000162405.1;transl_table=11
NZ_APAH01000135.1	RefSeq	gene	2298	3197	.	-	.	ID=gene-CFSAN001082_RS31350;Name=ttdA;gbkey=Gene;gene=ttdA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31350;old_locus_tag=CFSAN001082_07407
NZ_APAH01000135.1	Protein Homology	CDS	2298	3197	.	-	0	ID=cds-WP_023254084.1;Parent=gene-CFSAN001082_RS31350;Dbxref=GenBank:WP_023254084.1;Name=WP_023254084.1;Ontology_term=GO:0008730;gbkey=CDS;gene=ttdA;go_function=L(+)-tartrate dehydratase activity|0008730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462265.1;locus_tag=CFSAN001082_RS31350;product=L(+)-tartrate dehydratase subunit alpha;protein_id=WP_023254084.1;transl_table=11
NZ_APAH01000135.1	RefSeq	gene	3230	4498	.	-	.	ID=gene-CFSAN001082_RS31355;Name=CFSAN001082_RS31355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31355;old_locus_tag=CFSAN001082_07412
NZ_APAH01000135.1	Protein Homology	CDS	3230	4498	.	-	0	ID=cds-WP_023254085.1;Parent=gene-CFSAN001082_RS31355;Dbxref=GenBank:WP_023254085.1;Name=WP_023254085.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462266.1;locus_tag=CFSAN001082_RS31355;product=SLC13 family permease;protein_id=WP_023254085.1;transl_table=11
NZ_APAH01000135.1	RefSeq	gene	4709	5374	.	-	.	ID=gene-CFSAN001082_RS31360;Name=CFSAN001082_RS31360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31360;old_locus_tag=CFSAN001082_07417
NZ_APAH01000135.1	Protein Homology	CDS	4709	5374	.	-	0	ID=cds-WP_001171581.1;Parent=gene-CFSAN001082_RS31360;Dbxref=GenBank:WP_001171581.1;Name=WP_001171581.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462267.1;locus_tag=CFSAN001082_RS31360;product=GntR family transcriptional regulator;protein_id=WP_001171581.1;transl_table=11
NZ_APAH01000135.1	RefSeq	gene	5361	5990	.	-	.	ID=gene-CFSAN001082_RS31365;Name=CFSAN001082_RS31365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31365;old_locus_tag=CFSAN001082_07422
NZ_APAH01000135.1	Protein Homology	CDS	5361	5990	.	-	0	ID=cds-WP_000723776.1;Parent=gene-CFSAN001082_RS31365;Dbxref=GenBank:WP_000723776.1;Name=WP_000723776.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462268.1;locus_tag=CFSAN001082_RS31365;product=GntR family transcriptional regulator;protein_id=WP_000723776.1;transl_table=11
NZ_APAH01000135.1	RefSeq	gene	6110	7048	.	-	.	ID=gene-CFSAN001082_RS31370;Name=mdh;gbkey=Gene;gene=mdh;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31370;old_locus_tag=CFSAN001082_07427
NZ_APAH01000135.1	Protein Homology	CDS	6110	7048	.	-	0	ID=cds-WP_023254086.1;Parent=gene-CFSAN001082_RS31370;Dbxref=GenBank:WP_023254086.1;Name=WP_023254086.1;Ontology_term=GO:0006099,GO:0030060;gbkey=CDS;gene=mdh;go_function=L-malate dehydrogenase (NAD+) activity|0030060||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000861594.1;locus_tag=CFSAN001082_RS31370;product=malate dehydrogenase;protein_id=WP_023254086.1;transl_table=11
NZ_APAH01000135.1	RefSeq	gene	7463	7933	.	+	.	ID=gene-CFSAN001082_RS31375;Name=argR;gbkey=Gene;gene=argR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31375;old_locus_tag=CFSAN001082_07432
NZ_APAH01000135.1	Protein Homology	CDS	7463	7933	.	+	0	ID=cds-WP_001257852.1;Parent=gene-CFSAN001082_RS31375;Dbxref=GenBank:WP_001257852.1;Name=WP_001257852.1;gbkey=CDS;gene=argR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001257852.1;locus_tag=CFSAN001082_RS31375;product=transcriptional regulator ArgR;protein_id=WP_001257852.1;transl_table=11
##sequence-region NZ_APAH01000136.1 1 10972
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000136.1	RefSeq	region	1	10972	.	+	.	ID=NZ_APAH01000136.1:1..10972;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000136.1	RefSeq	gene	153	1073	.	+	.	ID=gene-CFSAN001082_RS31380;Name=oppB;gbkey=Gene;gene=oppB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31380;old_locus_tag=CFSAN001082_07442
NZ_APAH01000136.1	Protein Homology	CDS	153	1073	.	+	0	ID=cds-WP_000911097.1;Parent=gene-CFSAN001082_RS31380;Dbxref=GenBank:WP_000911097.1;Name=WP_000911097.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=oppB;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126405.1;locus_tag=CFSAN001082_RS31380;product=oligopeptide ABC transporter permease OppB;protein_id=WP_000911097.1;transl_table=11
NZ_APAH01000136.1	RefSeq	gene	1088	1996	.	+	.	ID=gene-CFSAN001082_RS31385;Name=oppC;gbkey=Gene;gene=oppC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31385;old_locus_tag=CFSAN001082_07447
NZ_APAH01000136.1	Protein Homology	CDS	1088	1996	.	+	0	ID=cds-WP_000979653.1;Parent=gene-CFSAN001082_RS31385;Dbxref=GenBank:WP_000979653.1;Name=WP_000979653.1;Ontology_term=GO:0055085;gbkey=CDS;gene=oppC;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000979653.1;locus_tag=CFSAN001082_RS31385;product=oligopeptide ABC transporter permease OppC;protein_id=WP_000979653.1;transl_table=11
NZ_APAH01000136.1	RefSeq	gene	2008	3015	.	+	.	ID=gene-CFSAN001082_RS31390;Name=CFSAN001082_RS31390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31390;old_locus_tag=CFSAN001082_07452
NZ_APAH01000136.1	Protein Homology	CDS	2008	3015	.	+	0	ID=cds-WP_000058857.1;Parent=gene-CFSAN001082_RS31390;Dbxref=GenBank:WP_000058857.1;Name=WP_000058857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460702.1;locus_tag=CFSAN001082_RS31390;product=ABC transporter ATP-binding protein;protein_id=WP_000058857.1;transl_table=11
NZ_APAH01000136.1	RefSeq	gene	3012	4016	.	+	.	ID=gene-CFSAN001082_RS31395;Name=oppF;gbkey=Gene;gene=oppF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31395;old_locus_tag=CFSAN001082_07457
NZ_APAH01000136.1	Protein Homology	CDS	3012	4016	.	+	0	ID=cds-WP_000994698.1;Parent=gene-CFSAN001082_RS31395;Dbxref=GenBank:WP_000994698.1;Name=WP_000994698.1;gbkey=CDS;gene=oppF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506804.1;locus_tag=CFSAN001082_RS31395;product=murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF;protein_id=WP_000994698.1;transl_table=11
NZ_APAH01000136.1	RefSeq	gene	4064	4900	.	+	.	ID=gene-CFSAN001082_RS31400;Name=CFSAN001082_RS31400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31400;old_locus_tag=CFSAN001082_07462
NZ_APAH01000136.1	Protein Homology	CDS	4064	4900	.	+	0	ID=cds-WP_000059074.1;Parent=gene-CFSAN001082_RS31400;Dbxref=GenBank:WP_000059074.1;Name=WP_000059074.1;Ontology_term=GO:0006811,GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=monoatomic ion transport|0006811||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460700.1;locus_tag=CFSAN001082_RS31400;product=ion transporter;protein_id=WP_000059074.1;transl_table=11
NZ_APAH01000136.1	RefSeq	gene	4948	5277	.	-	.	ID=gene-CFSAN001082_RS31405;Name=CFSAN001082_RS31405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31405;old_locus_tag=CFSAN001082_07467
NZ_APAH01000136.1	Protein Homology	CDS	4948	5277	.	-	0	ID=cds-WP_000425070.1;Parent=gene-CFSAN001082_RS31405;Dbxref=GenBank:WP_000425070.1;Name=WP_000425070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448158.1;locus_tag=CFSAN001082_RS31405;product=HI1450 family dsDNA-mimic protein;protein_id=WP_000425070.1;transl_table=11
NZ_APAH01000136.1	RefSeq	gene	5311	6771	.	-	.	ID=gene-CFSAN001082_RS31410;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31410;old_locus_tag=CFSAN001082_07472
NZ_APAH01000136.1	Protein Homology	CDS	5311	6771	.	-	0	ID=cds-WP_000206886.1;Parent=gene-CFSAN001082_RS31410;Dbxref=GenBank:WP_000206886.1;Name=WP_000206886.1;Ontology_term=GO:0032049,GO:0008808,GO:0016780;gbkey=CDS;gene=cls;go_function=cardiolipin synthase activity|0008808||IEA,phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126413.1;locus_tag=CFSAN001082_RS31410;product=cardiolipin synthase;protein_id=WP_000206886.1;transl_table=11
NZ_APAH01000136.1	RefSeq	gene	6914	7087	.	+	.	ID=gene-CFSAN001082_RS48200;Name=CFSAN001082_RS48200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48200;old_locus_tag=CFSAN001082_07477
NZ_APAH01000136.1	Protein Homology	CDS	6914	7087	.	+	0	ID=cds-WP_001531561.1;Parent=gene-CFSAN001082_RS48200;Dbxref=GenBank:WP_001531561.1;Name=WP_001531561.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165316.1;locus_tag=CFSAN001082_RS48200;product=YciY family protein;protein_id=WP_001531561.1;transl_table=11
NZ_APAH01000136.1	RefSeq	gene	7131	7427	.	-	.	ID=gene-CFSAN001082_RS31415;Name=CFSAN001082_RS31415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31415;old_locus_tag=CFSAN001082_07482
NZ_APAH01000136.1	Protein Homology	CDS	7131	7427	.	-	0	ID=cds-WP_000967605.1;Parent=gene-CFSAN001082_RS31415;Dbxref=GenBank:WP_000967605.1;Name=WP_000967605.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460697.1;locus_tag=CFSAN001082_RS31415;product=YciI family protein;protein_id=WP_000967605.1;transl_table=11
NZ_APAH01000136.1	RefSeq	gene	7651	8379	.	+	.	ID=gene-CFSAN001082_RS31420;Name=tonB;gbkey=Gene;gene=tonB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31420;old_locus_tag=CFSAN001082_07487
NZ_APAH01000136.1	Protein Homology	CDS	7651	8379	.	+	0	ID=cds-WP_001525247.1;Parent=gene-CFSAN001082_RS31420;Dbxref=GenBank:WP_001525247.1;Name=WP_001525247.1;Ontology_term=GO:0015891,GO:0055085,GO:0015343,GO:0030288;gbkey=CDS;gene=tonB;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=siderophore-iron transmembrane transporter activity|0015343||IEA;go_process=siderophore transport|0015891||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460696.1;locus_tag=CFSAN001082_RS31420;product=TonB system transport protein TonB;protein_id=WP_001525247.1;transl_table=11
NZ_APAH01000136.1	RefSeq	gene	8439	8840	.	-	.	ID=gene-CFSAN001082_RS31425;Name=yciA;gbkey=Gene;gene=yciA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31425;old_locus_tag=CFSAN001082_07492
NZ_APAH01000136.1	Protein Homology	CDS	8439	8840	.	-	0	ID=cds-WP_000210317.1;Parent=gene-CFSAN001082_RS31425;Dbxref=GenBank:WP_000210317.1;Name=WP_000210317.1;Ontology_term=GO:0016790;gbkey=CDS;gene=yciA;go_function=thiolester hydrolase activity|0016790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460695.1;locus_tag=CFSAN001082_RS31425;product=acyl-CoA thioester hydrolase YciA;protein_id=WP_000210317.1;transl_table=11
NZ_APAH01000136.1	RefSeq	gene	9001	9540	.	-	.	ID=gene-CFSAN001082_RS31430;Name=CFSAN001082_RS31430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31430;old_locus_tag=CFSAN001082_07497
NZ_APAH01000136.1	Protein Homology	CDS	9001	9540	.	-	0	ID=cds-WP_000808682.1;Parent=gene-CFSAN001082_RS31430;Dbxref=GenBank:WP_000808682.1;Name=WP_000808682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460694.1;locus_tag=CFSAN001082_RS31430;product=septation protein A;protein_id=WP_000808682.1;transl_table=11
NZ_APAH01000136.1	RefSeq	gene	9597	10340	.	-	.	ID=gene-CFSAN001082_RS31435;Name=CFSAN001082_RS31435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31435;old_locus_tag=CFSAN001082_07502
NZ_APAH01000136.1	Protein Homology	CDS	9597	10340	.	-	0	ID=cds-WP_023195912.1;Parent=gene-CFSAN001082_RS31435;Dbxref=GenBank:WP_023195912.1;Name=WP_023195912.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460693.1;locus_tag=CFSAN001082_RS31435;product=YciC family protein;protein_id=WP_023195912.1;transl_table=11
NZ_APAH01000136.1	RefSeq	gene	10366	10770	.	-	.	ID=gene-CFSAN001082_RS31440;Name=CFSAN001082_RS31440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31440;old_locus_tag=CFSAN001082_07507
NZ_APAH01000136.1	Protein Homology	CDS	10366	10770	.	-	0	ID=cds-WP_000114955.1;Parent=gene-CFSAN001082_RS31440;Dbxref=GenBank:WP_000114955.1;Name=WP_000114955.1;Ontology_term=GO:0046872,GO:0051536;gbkey=CDS;go_function=metal ion binding|0046872||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460692.1;locus_tag=CFSAN001082_RS31440;product=YkgJ family cysteine cluster protein;protein_id=WP_000114955.1;transl_table=11
##sequence-region NZ_APAH01000137.1 1 10169
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000137.1	RefSeq	region	1	10169	.	+	.	ID=NZ_APAH01000137.1:1..10169;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000137.1	RefSeq	gene	1	901	.	+	.	ID=gene-CFSAN001082_RS31445;Name=CFSAN001082_RS31445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31445;old_locus_tag=CFSAN001082_07512;partial=true;start_range=.,1
NZ_APAH01000137.1	Protein Homology	CDS	1	901	.	+	1	ID=cds-WP_023254087.1;Parent=gene-CFSAN001082_RS31445;Dbxref=GenBank:WP_023254087.1;Name=WP_023254087.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460322.1;locus_tag=CFSAN001082_RS31445;partial=true;product=acyl-CoA dehydrogenase;protein_id=WP_023254087.1;start_range=.,1;transl_table=11
NZ_APAH01000137.1	RefSeq	gene	977	1867	.	-	.	ID=gene-CFSAN001082_RS31450;Name=CFSAN001082_RS31450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31450;old_locus_tag=CFSAN001082_07517
NZ_APAH01000137.1	Protein Homology	CDS	977	1867	.	-	0	ID=cds-WP_000284832.1;Parent=gene-CFSAN001082_RS31450;Dbxref=GenBank:WP_000284832.1;Name=WP_000284832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460321.1;locus_tag=CFSAN001082_RS31450;product=AraC family transcriptional regulator;protein_id=WP_000284832.1;transl_table=11
NZ_APAH01000137.1	RefSeq	gene	2330	3094	.	+	.	ID=gene-CFSAN001082_RS31455;Name=CFSAN001082_RS31455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31455;old_locus_tag=CFSAN001082_07522
NZ_APAH01000137.1	Protein Homology	CDS	2330	3094	.	+	0	ID=cds-WP_000692095.1;Parent=gene-CFSAN001082_RS31455;Dbxref=GenBank:WP_000692095.1;Name=WP_000692095.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460320.1;locus_tag=CFSAN001082_RS31455;product=electron transfer flavoprotein;protein_id=WP_000692095.1;transl_table=11
NZ_APAH01000137.1	RefSeq	gene	3116	4051	.	+	.	ID=gene-CFSAN001082_RS31460;Name=CFSAN001082_RS31460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31460;old_locus_tag=CFSAN001082_07527
NZ_APAH01000137.1	Protein Homology	CDS	3116	4051	.	+	0	ID=cds-WP_001015880.1;Parent=gene-CFSAN001082_RS31460;Dbxref=GenBank:WP_001015880.1;Name=WP_001015880.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460319.1;locus_tag=CFSAN001082_RS31460;product=electron transfer flavoprotein subunit alpha;protein_id=WP_001015880.1;transl_table=11
NZ_APAH01000137.1	RefSeq	gene	4108	5394	.	+	.	ID=gene-CFSAN001082_RS31465;Name=CFSAN001082_RS31465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31465;old_locus_tag=CFSAN001082_07532
NZ_APAH01000137.1	Protein Homology	CDS	4108	5394	.	+	0	ID=cds-WP_023254088.1;Parent=gene-CFSAN001082_RS31465;Dbxref=GenBank:WP_023254088.1;Name=WP_023254088.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460318.1;locus_tag=CFSAN001082_RS31465;product=FAD-dependent oxidoreductase;protein_id=WP_023254088.1;transl_table=11
NZ_APAH01000137.1	RefSeq	gene	5391	5684	.	+	.	ID=gene-CFSAN001082_RS31470;Name=CFSAN001082_RS31470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31470;old_locus_tag=CFSAN001082_07537
NZ_APAH01000137.1	Protein Homology	CDS	5391	5684	.	+	0	ID=cds-WP_000093362.1;Parent=gene-CFSAN001082_RS31470;Dbxref=GenBank:WP_000093362.1;Name=WP_000093362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460317.1;locus_tag=CFSAN001082_RS31470;product=ferredoxin family protein;protein_id=WP_000093362.1;transl_table=11
NZ_APAH01000137.1	RefSeq	gene	5774	7414	.	+	.	ID=gene-CFSAN001082_RS31475;Name=fadK;gbkey=Gene;gene=fadK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31475;old_locus_tag=CFSAN001082_07542
NZ_APAH01000137.1	Protein Homology	CDS	5774	7414	.	+	0	ID=cds-WP_017441000.1;Parent=gene-CFSAN001082_RS31475;Dbxref=GenBank:WP_017441000.1;Name=WP_017441000.1;gbkey=CDS;gene=fadK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460316.1;locus_tag=CFSAN001082_RS31475;product=medium-chain fatty-acid--CoA ligase;protein_id=WP_017441000.1;transl_table=11
NZ_APAH01000137.1	RefSeq	gene	7456	9834	.	-	.	ID=gene-CFSAN001082_RS31480;Name=ppsA;gbkey=Gene;gene=ppsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31480;old_locus_tag=CFSAN001082_07547
NZ_APAH01000137.1	Protein Homology	CDS	7456	9834	.	-	0	ID=cds-WP_000069333.1;Parent=gene-CFSAN001082_RS31480;Dbxref=GenBank:WP_000069333.1;Name=WP_000069333.1;Ontology_term=GO:0006090,GO:0016310,GO:0005524,GO:0008986,GO:0016772;gbkey=CDS;gene=ppsA;go_function=ATP binding|0005524||IEA,pyruvate%2C water dikinase activity|0008986||IEA,transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;go_process=pyruvate metabolic process|0006090||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460315.1;locus_tag=CFSAN001082_RS31480;product=phosphoenolpyruvate synthase;protein_id=WP_000069333.1;transl_table=11
##sequence-region NZ_APAH01000138.1 1 243
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000138.1	RefSeq	region	1	243	.	+	.	ID=NZ_APAH01000138.1:1..243;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000138.1	RefSeq	pseudogene	1	243	.	+	.	ID=gene-CFSAN001082_RS31485;Name=CFSAN001082_RS31485;end_range=243,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS31485;old_locus_tag=CFSAN001082_07557;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000138.1	Protein Homology	CDS	1	243	.	+	2	ID=cds-CFSAN001082_RS31485;Parent=gene-CFSAN001082_RS31485;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=243,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459744.1;locus_tag=CFSAN001082_RS31485;partial=true;product=LysR family transcriptional regulator;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000139.1 1 9460
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000139.1	RefSeq	region	1	9460	.	+	.	ID=NZ_APAH01000139.1:1..9460;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000139.1	RefSeq	gene	117	1679	.	+	.	ID=gene-CFSAN001082_RS31490;Name=hpaB;gbkey=Gene;gene=hpaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31490;old_locus_tag=CFSAN001082_07562
NZ_APAH01000139.1	Protein Homology	CDS	117	1679	.	+	0	ID=cds-WP_000801496.1;Parent=gene-CFSAN001082_RS31490;Dbxref=GenBank:WP_000801496.1;Name=WP_000801496.1;Ontology_term=GO:0010124,GO:0016712,GO:0050660;gbkey=CDS;gene=hpaB;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C reduced flavin or flavoprotein as one donor%2C and incorporation of one atom of oxygen|0016712||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000801462.1;locus_tag=CFSAN001082_RS31490;product=4-hydroxyphenylacetate 3-monooxygenase%2C oxygenase component;protein_id=WP_000801496.1;transl_table=11
NZ_APAH01000139.1	RefSeq	gene	1697	2209	.	+	.	ID=gene-CFSAN001082_RS31495;Name=CFSAN001082_RS31495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31495;old_locus_tag=CFSAN001082_07567
NZ_APAH01000139.1	Protein Homology	CDS	1697	2209	.	+	0	ID=cds-WP_001195556.1;Parent=gene-CFSAN001082_RS31495;Dbxref=GenBank:WP_001195556.1;Name=WP_001195556.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460071.1;locus_tag=CFSAN001082_RS31495;product=4-hydroxyphenylacetate 3-monooxygenase reductase subunit;protein_id=WP_001195556.1;transl_table=11
NZ_APAH01000139.1	RefSeq	gene	2542	2952	.	-	.	ID=gene-CFSAN001082_RS31500;Name=hiuH;gbkey=Gene;gene=hiuH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31500;old_locus_tag=CFSAN001082_07572
NZ_APAH01000139.1	Protein Homology	CDS	2542	2952	.	-	0	ID=cds-WP_000833182.1;Parent=gene-CFSAN001082_RS31500;Dbxref=GenBank:WP_000833182.1;Name=WP_000833182.1;gbkey=CDS;gene=hiuH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460070.1;locus_tag=CFSAN001082_RS31500;product=hydroxyisourate hydrolase;protein_id=WP_000833182.1;transl_table=11
NZ_APAH01000139.1	RefSeq	gene	3088	3768	.	+	.	ID=gene-CFSAN001082_RS31505;Name=hprR;gbkey=Gene;gene=hprR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31505;old_locus_tag=CFSAN001082_07577
NZ_APAH01000139.1	Protein Homology	CDS	3088	3768	.	+	0	ID=cds-WP_023254090.1;Parent=gene-CFSAN001082_RS31505;Dbxref=GenBank:WP_023254090.1;Name=WP_023254090.1;gbkey=CDS;gene=hprR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000698203.1;locus_tag=CFSAN001082_RS31505;product=response regulator transcription factor HprR;protein_id=WP_023254090.1;transl_table=11
NZ_APAH01000139.1	RefSeq	gene	3761	5125	.	+	.	ID=gene-CFSAN001082_RS31510;Name=CFSAN001082_RS31510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31510;old_locus_tag=CFSAN001082_07582
NZ_APAH01000139.1	Protein Homology	CDS	3761	5125	.	+	0	ID=cds-WP_023254091.1;Parent=gene-CFSAN001082_RS31510;Dbxref=GenBank:WP_023254091.1;Name=WP_023254091.1;Ontology_term=GO:0000160,GO:0016310,GO:0000155,GO:0004673,GO:0016772,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447527.1;locus_tag=CFSAN001082_RS31510;product=heavy metal sensor histidine kinase;protein_id=WP_023254091.1;transl_table=11
NZ_APAH01000139.1	RefSeq	gene	5298	6767	.	+	.	ID=gene-CFSAN001082_RS31515;Name=CFSAN001082_RS31515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31515;old_locus_tag=CFSAN001082_07587
NZ_APAH01000139.1	Protein Homology	CDS	5298	6767	.	+	0	ID=cds-WP_023254092.1;Parent=gene-CFSAN001082_RS31515;Dbxref=GenBank:WP_023254092.1;Name=WP_023254092.1;Ontology_term=GO:0006508,GO:0016805;gbkey=CDS;go_function=dipeptidase activity|0016805||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460067.1;locus_tag=CFSAN001082_RS31515;product=C69 family dipeptidase;protein_id=WP_023254092.1;transl_table=11
NZ_APAH01000139.1	RefSeq	gene	6876	6986	.	+	.	ID=gene-CFSAN001082_RS0123195;Name=CFSAN001082_RS0123195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123195
NZ_APAH01000139.1	Protein Homology	CDS	6876	6986	.	+	0	ID=cds-WP_000174814.1;Parent=gene-CFSAN001082_RS0123195;Dbxref=GenBank:WP_000174814.1;Name=WP_000174814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447525.1;locus_tag=CFSAN001082_RS0123195;product=hypothetical protein;protein_id=WP_000174814.1;transl_table=11
NZ_APAH01000139.1	RefSeq	gene	6987	7157	.	-	.	ID=gene-CFSAN001082_RS31520;Name=CFSAN001082_RS31520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31520;old_locus_tag=CFSAN001082_07592
NZ_APAH01000139.1	Protein Homology	CDS	6987	7157	.	-	0	ID=cds-WP_001111006.1;Parent=gene-CFSAN001082_RS31520;Dbxref=GenBank:WP_001111006.1;Name=WP_001111006.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460065.1;locus_tag=CFSAN001082_RS31520;product=YlcI/YnfO family protein;protein_id=WP_001111006.1;transl_table=11
NZ_APAH01000139.1	RefSeq	gene	7490	9175	.	+	.	ID=gene-CFSAN001082_RS31525;Name=sopB;gbkey=Gene;gene=sopB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31525;old_locus_tag=CFSAN001082_07597
NZ_APAH01000139.1	Protein Homology	CDS	7490	9175	.	+	0	ID=cds-WP_023254093.1;Parent=gene-CFSAN001082_RS31525;Dbxref=GenBank:WP_023254093.1;Name=WP_023254093.1;gbkey=CDS;gene=sopB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460064.1;locus_tag=CFSAN001082_RS31525;product=SPI-1 type III secretion system effector inositol phosphate phosphatase SopB;protein_id=WP_023254093.1;transl_table=11
NZ_APAH01000139.1	RefSeq	gene	9192	9460	.	+	.	ID=gene-CFSAN001082_RS31530;Name=sigE;end_range=9460,.;gbkey=Gene;gene=sigE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31530;old_locus_tag=CFSAN001082_07602;partial=true
NZ_APAH01000139.1	Protein Homology	CDS	9192	9460	.	+	0	ID=cds-WP_023254094.1;Parent=gene-CFSAN001082_RS31530;Dbxref=GenBank:WP_023254094.1;Name=WP_023254094.1;end_range=9460,.;gbkey=CDS;gene=sigE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460063.1;locus_tag=CFSAN001082_RS31530;partial=true;product=type III secretion system chaperone SigE;protein_id=WP_023254094.1;transl_table=11
##sequence-region NZ_APAH01000140.1 1 403
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000140.1	RefSeq	region	1	403	.	+	.	ID=NZ_APAH01000140.1:1..403;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000140.1	RefSeq	gene	1	403	.	+	.	ID=gene-CFSAN001082_RS31535;Name=CFSAN001082_RS31535;end_range=403,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31535;old_locus_tag=CFSAN001082_07607;partial=true;start_range=.,1
NZ_APAH01000140.1	Protein Homology	CDS	1	403	.	+	1	ID=cds-WP_023254095.1;Parent=gene-CFSAN001082_RS31535;Dbxref=GenBank:WP_023254095.1;Name=WP_023254095.1;end_range=403,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001772497.1;locus_tag=CFSAN001082_RS31535;partial=true;product=polysaccharide pyruvyl transferase family protein;protein_id=WP_023254095.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000141.1 1 2346
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000141.1	RefSeq	region	1	2346	.	+	.	ID=NZ_APAH01000141.1:1..2346;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000141.1	RefSeq	gene	5	487	.	+	.	ID=gene-CFSAN001082_RS31540;Name=CFSAN001082_RS31540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31540;old_locus_tag=CFSAN001082_07612
NZ_APAH01000141.1	Protein Homology	CDS	5	487	.	+	0	ID=cds-WP_014341298.1;Parent=gene-CFSAN001082_RS31540;Dbxref=GenBank:WP_014341298.1;Name=WP_014341298.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311394.2;locus_tag=CFSAN001082_RS31540;product=glycine zipper 2TM domain-containing protein;protein_id=WP_014341298.1;transl_table=11
NZ_APAH01000141.1	RefSeq	gene	503	1042	.	+	.	ID=gene-CFSAN001082_RS31545;Name=CFSAN001082_RS31545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31545;old_locus_tag=CFSAN001082_07617
NZ_APAH01000141.1	Protein Homology	CDS	503	1042	.	+	0	ID=cds-WP_000755794.1;Parent=gene-CFSAN001082_RS31545;Dbxref=GenBank:WP_000755794.1;Name=WP_000755794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000755162.1;locus_tag=CFSAN001082_RS31545;product=DUF5384 family protein;protein_id=WP_000755794.1;transl_table=11
NZ_APAH01000141.1	RefSeq	pseudogene	1208	1351	.	-	.	ID=gene-CFSAN001082_RS48785;Name=CFSAN001082_RS48785;end_range=1351,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48785;partial=true;pseudo=true
NZ_APAH01000141.1	Protein Homology	CDS	1208	1351	.	-	0	ID=cds-CFSAN001082_RS48785;Parent=gene-CFSAN001082_RS48785;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1351,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448901.1;locus_tag=CFSAN001082_RS48785;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000141.1	RefSeq	gene	1603	1758	.	-	.	ID=gene-CFSAN001082_RS48535;Name=CFSAN001082_RS48535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48535
NZ_APAH01000141.1	Protein Homology	CDS	1603	1758	.	-	0	ID=cds-WP_000568804.1;Parent=gene-CFSAN001082_RS48535;Dbxref=GenBank:WP_000568804.1;Name=WP_000568804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000568804.1;locus_tag=CFSAN001082_RS48535;product=hypothetical protein;protein_id=WP_000568804.1;transl_table=11
NZ_APAH01000141.1	RefSeq	pseudogene	1842	2346	.	+	.	ID=gene-CFSAN001082_RS48790;Name=CFSAN001082_RS48790;end_range=2346,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48790;old_locus_tag=CFSAN001082_07627;partial=true;pseudo=true
NZ_APAH01000141.1	Protein Homology	CDS	1842	2346	.	+	0	ID=cds-CFSAN001082_RS48790;Parent=gene-CFSAN001082_RS48790;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=2346,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441380.1;locus_tag=CFSAN001082_RS48790;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000142.1 1 14610
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000142.1	RefSeq	region	1	14610	.	+	.	ID=NZ_APAH01000142.1:1..14610;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000142.1	RefSeq	gene	1	758	.	-	.	ID=gene-CFSAN001082_RS31555;Name=rfaP;gbkey=Gene;gene=rfaP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31555;old_locus_tag=CFSAN001082_07632;partial=true;start_range=.,1
NZ_APAH01000142.1	Protein Homology	CDS	1	758	.	-	0	ID=cds-WP_023254098.1;Parent=gene-CFSAN001082_RS31555;Dbxref=GenBank:WP_023254098.1;Name=WP_023254098.1;Ontology_term=GO:0009103,GO:0016301;gbkey=CDS;gene=rfaP;go_function=kinase activity|0016301||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462621.1;locus_tag=CFSAN001082_RS31555;partial=true;product=lipopolysaccharide core heptose(I) kinase RfaP;protein_id=WP_023254098.1;start_range=.,1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	751	1875	.	-	.	ID=gene-CFSAN001082_RS31560;Name=CFSAN001082_RS31560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31560;old_locus_tag=CFSAN001082_07637
NZ_APAH01000142.1	Protein Homology	CDS	751	1875	.	-	0	ID=cds-WP_023254099.1;Parent=gene-CFSAN001082_RS31560;Dbxref=GenBank:WP_023254099.1;Name=WP_023254099.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462622.1;locus_tag=CFSAN001082_RS31560;product=glycosyltransferase family 4 protein;protein_id=WP_023254099.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	1872	2942	.	-	.	ID=gene-CFSAN001082_RS31565;Name=rfaQ;gbkey=Gene;gene=rfaQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31565;old_locus_tag=CFSAN001082_07642
NZ_APAH01000142.1	Protein Homology	CDS	1872	2942	.	-	0	ID=cds-WP_071787086.1;Parent=gene-CFSAN001082_RS31565;Dbxref=GenBank:WP_071787086.1;Name=WP_071787086.1;Ontology_term=GO:0016757;gbkey=CDS;gene=rfaQ;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001521713.1;locus_tag=CFSAN001082_RS31565;product=lipopolysaccharide core heptosyltransferase RfaQ;protein_id=WP_071787086.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	3351	4628	.	+	.	ID=gene-CFSAN001082_RS31570;Name=waaA;gbkey=Gene;gene=waaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31570;old_locus_tag=CFSAN001082_07647
NZ_APAH01000142.1	Protein Homology	CDS	3351	4628	.	+	0	ID=cds-WP_000891582.1;Parent=gene-CFSAN001082_RS31570;Dbxref=GenBank:WP_000891582.1;Name=WP_000891582.1;Ontology_term=GO:0016740;gbkey=CDS;gene=waaA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462624.1;locus_tag=CFSAN001082_RS31570;product=lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase;protein_id=WP_000891582.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	4637	5116	.	+	.	ID=gene-CFSAN001082_RS31575;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31575;old_locus_tag=CFSAN001082_07652
NZ_APAH01000142.1	Protein Homology	CDS	4637	5116	.	+	0	ID=cds-WP_001171884.1;Parent=gene-CFSAN001082_RS31575;Dbxref=GenBank:WP_001171884.1;Name=WP_001171884.1;Ontology_term=GO:0015937,GO:0004595;gbkey=CDS;gene=coaD;go_function=pantetheine-phosphate adenylyltransferase activity|0004595||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462625.1;locus_tag=CFSAN001082_RS31575;product=pantetheine-phosphate adenylyltransferase;protein_id=WP_001171884.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	5143	5952	.	-	.	ID=gene-CFSAN001082_RS31580;Name=mutM;gbkey=Gene;gene=mutM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31580;old_locus_tag=CFSAN001082_07657
NZ_APAH01000142.1	Protein Homology	CDS	5143	5952	.	-	0	ID=cds-WP_001114516.1;Parent=gene-CFSAN001082_RS31580;Dbxref=GenBank:WP_001114516.1;Name=WP_001114516.1;Ontology_term=GO:0006281,GO:0006284,GO:0003676,GO:0003684,GO:0003906,GO:0008270,GO:0008534,GO:0016799,GO:0019104;gbkey=CDS;gene=mutM;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA,zinc ion binding|0008270||IEA,oxidized purine nucleobase lesion DNA N-glycosylase activity|0008534||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA,DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA,base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462626.1;locus_tag=CFSAN001082_RS31580;product=bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase;protein_id=WP_001114516.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	6050	6217	.	-	.	ID=gene-CFSAN001082_RS31585;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31585;old_locus_tag=CFSAN001082_07662
NZ_APAH01000142.1	Protein Homology	CDS	6050	6217	.	-	0	ID=cds-WP_001051798.1;Parent=gene-CFSAN001082_RS31585;Dbxref=GenBank:WP_001051798.1;Name=WP_001051798.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmG;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010847629.1;locus_tag=CFSAN001082_RS31585;product=50S ribosomal protein L33;protein_id=WP_001051798.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	6238	6474	.	-	.	ID=gene-CFSAN001082_RS31590;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31590;old_locus_tag=CFSAN001082_07667
NZ_APAH01000142.1	Protein Homology	CDS	6238	6474	.	-	0	ID=cds-WP_001519051.1;Parent=gene-CFSAN001082_RS31590;Dbxref=GenBank:WP_001519051.1;Name=WP_001519051.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmB;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008457442.1;locus_tag=CFSAN001082_RS31590;product=50S ribosomal protein L28;protein_id=WP_001519051.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	6692	7357	.	-	.	ID=gene-CFSAN001082_RS31595;Name=radC;gbkey=Gene;gene=radC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31595;old_locus_tag=CFSAN001082_07672
NZ_APAH01000142.1	Protein Homology	CDS	6692	7357	.	-	0	ID=cds-WP_000380129.1;Parent=gene-CFSAN001082_RS31595;Dbxref=GenBank:WP_000380129.1;Name=WP_000380129.1;gbkey=CDS;gene=radC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462629.1;locus_tag=CFSAN001082_RS31595;product=RadC family protein;protein_id=WP_000380129.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	7533	8753	.	+	.	ID=gene-CFSAN001082_RS31600;Name=coaBC;gbkey=Gene;gene=coaBC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31600;old_locus_tag=CFSAN001082_07677
NZ_APAH01000142.1	Protein Homology	CDS	7533	8753	.	+	0	ID=cds-WP_000050176.1;Parent=gene-CFSAN001082_RS31600;Dbxref=GenBank:WP_000050176.1;Name=WP_000050176.1;Ontology_term=GO:0015937,GO:0015941,GO:0004632,GO:0004633,GO:0010181;gbkey=CDS;gene=coaBC;go_function=phosphopantothenate--cysteine ligase activity|0004632||IEA,phosphopantothenoylcysteine decarboxylase activity|0004633||IEA,FMN binding|0010181||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA,pantothenate catabolic process|0015941||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418096.4;locus_tag=CFSAN001082_RS31600;product=bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC;protein_id=WP_000050176.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	8731	9189	.	+	.	ID=gene-CFSAN001082_RS31605;Name=dut;gbkey=Gene;gene=dut;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31605;old_locus_tag=CFSAN001082_07682
NZ_APAH01000142.1	Protein Homology	CDS	8731	9189	.	+	0	ID=cds-WP_000976078.1;Parent=gene-CFSAN001082_RS31605;Dbxref=GenBank:WP_000976078.1;Name=WP_000976078.1;Ontology_term=GO:0006226,GO:0046081,GO:0000287,GO:0004170;gbkey=CDS;gene=dut;go_function=magnesium ion binding|0000287||IEA,dUTP diphosphatase activity|0004170||IEA;go_process=dUMP biosynthetic process|0006226||IEA,dUTP catabolic process|0046081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000976070.1;locus_tag=CFSAN001082_RS31605;product=dUTP diphosphatase;protein_id=WP_000976078.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	9297	9893	.	+	.	ID=gene-CFSAN001082_RS31610;Name=slmA;gbkey=Gene;gene=slmA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31610;old_locus_tag=CFSAN001082_07687
NZ_APAH01000142.1	Protein Homology	CDS	9297	9893	.	+	0	ID=cds-WP_000818595.1;Parent=gene-CFSAN001082_RS31610;Dbxref=GenBank:WP_000818595.1;Name=WP_000818595.1;Ontology_term=GO:0010974,GO:0003677;gbkey=CDS;gene=slmA;go_function=DNA binding|0003677||IEA;go_process=negative regulation of division septum assembly|0010974||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000818604.1;locus_tag=CFSAN001082_RS31610;product=nucleoid occlusion factor SlmA;protein_id=WP_000818595.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	9971	10612	.	-	.	ID=gene-CFSAN001082_RS31615;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31615;old_locus_tag=CFSAN001082_07692
NZ_APAH01000142.1	Protein Homology	CDS	9971	10612	.	-	0	ID=cds-WP_000806167.1;Parent=gene-CFSAN001082_RS31615;Dbxref=GenBank:WP_000806167.1;Name=WP_000806167.1;Ontology_term=GO:0009220,GO:0004588;gbkey=CDS;gene=pyrE;go_function=orotate phosphoribosyltransferase activity|0004588||IEA;go_process=pyrimidine ribonucleotide biosynthetic process|0009220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462633.1;locus_tag=CFSAN001082_RS31615;product=orotate phosphoribosyltransferase;protein_id=WP_000806167.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	10691	11407	.	-	.	ID=gene-CFSAN001082_RS31620;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31620;old_locus_tag=CFSAN001082_07697
NZ_APAH01000142.1	Protein Homology	CDS	10691	11407	.	-	0	ID=cds-WP_001247078.1;Parent=gene-CFSAN001082_RS31620;Dbxref=GenBank:WP_001247078.1;Name=WP_001247078.1;Ontology_term=GO:0008033,GO:0000049,GO:0009022;gbkey=CDS;gene=rph;go_function=tRNA binding|0000049||IEA,tRNA nucleotidyltransferase activity|0009022||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006803115.1;locus_tag=CFSAN001082_RS31620;product=ribonuclease PH;protein_id=WP_001247078.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	11533	12396	.	+	.	ID=gene-CFSAN001082_RS31625;Name=CFSAN001082_RS31625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31625;old_locus_tag=CFSAN001082_07702
NZ_APAH01000142.1	Protein Homology	CDS	11533	12396	.	+	0	ID=cds-WP_000621347.1;Parent=gene-CFSAN001082_RS31625;Dbxref=GenBank:WP_000621347.1;Name=WP_000621347.1;Ontology_term=GO:0016788;gbkey=CDS;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122606.1;locus_tag=CFSAN001082_RS31625;product=YicC/YloC family endoribonuclease;protein_id=WP_000621347.1;transl_table=11
NZ_APAH01000142.1	RefSeq	pseudogene	12588	13848	.	+	.	ID=gene-CFSAN001082_RS31630;Name=CFSAN001082_RS31630;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS31630;old_locus_tag=CFSAN001082_07707;pseudo=true
NZ_APAH01000142.1	Protein Homology	CDS	12588	13848	.	+	0	ID=cds-CFSAN001082_RS31630;Parent=gene-CFSAN001082_RS31630;Note=frameshifted;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000041075.1;locus_tag=CFSAN001082_RS31630;product=tyrosine-type recombinase/integrase;pseudo=true;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	14025	14450	.	+	.	ID=gene-CFSAN001082_RS31635;Name=CFSAN001082_RS31635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31635;old_locus_tag=CFSAN001082_07712
NZ_APAH01000142.1	GeneMarkS-2+	CDS	14025	14450	.	+	0	ID=cds-WP_023254101.1;Parent=gene-CFSAN001082_RS31635;Dbxref=GenBank:WP_023254101.1;Name=WP_023254101.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS31635;product=hypothetical protein;protein_id=WP_023254101.1;transl_table=11
NZ_APAH01000142.1	RefSeq	gene	14451	14610	.	+	.	ID=gene-CFSAN001082_RS49115;Name=CFSAN001082_RS49115;end_range=14610,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49115;old_locus_tag=CFSAN001082_07717;partial=true
NZ_APAH01000142.1	Protein Homology	CDS	14451	14610	.	+	0	ID=cds-WP_023254102.1;Parent=gene-CFSAN001082_RS49115;Dbxref=GenBank:WP_023254102.1;Name=WP_023254102.1;end_range=14610,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF042690.4;locus_tag=CFSAN001082_RS49115;partial=true;product=DUF6575 domain-containing protein;protein_id=WP_023254102.1;transl_table=11
##sequence-region NZ_APAH01000143.1 1 288
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000143.1	RefSeq	region	1	288	.	+	.	ID=NZ_APAH01000143.1:1..288;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000143.1	RefSeq	pseudogene	7	288	.	+	.	ID=gene-CFSAN001082_RS0123215;Name=CFSAN001082_RS0123215;end_range=288,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0123215;old_locus_tag=CFSAN001082_07722;partial=true;pseudo=true
NZ_APAH01000143.1	Protein Homology	CDS	7	288	.	+	0	ID=cds-CFSAN001082_RS0123215;Parent=gene-CFSAN001082_RS0123215;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=288,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012532499.1;locus_tag=CFSAN001082_RS0123215;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000144.1 1 4148
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000144.1	RefSeq	region	1	4148	.	+	.	ID=NZ_APAH01000144.1:1..4148;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000144.1	RefSeq	gene	223	1167	.	+	.	ID=gene-CFSAN001082_RS31640;Name=ydgH;gbkey=Gene;gene=ydgH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31640;old_locus_tag=CFSAN001082_07727
NZ_APAH01000144.1	Protein Homology	CDS	223	1167	.	+	0	ID=cds-WP_000769294.1;Parent=gene-CFSAN001082_RS31640;Dbxref=GenBank:WP_000769294.1;Name=WP_000769294.1;gbkey=CDS;gene=ydgH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460438.1;locus_tag=CFSAN001082_RS31640;product=DUF1471 family protein YdgH;protein_id=WP_000769294.1;transl_table=11
NZ_APAH01000144.1	RefSeq	gene	1466	2848	.	+	.	ID=gene-CFSAN001082_RS31645;Name=CFSAN001082_RS31645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31645;old_locus_tag=CFSAN001082_07732
NZ_APAH01000144.1	Protein Homology	CDS	1466	2848	.	+	0	ID=cds-WP_000412353.1;Parent=gene-CFSAN001082_RS31645;Dbxref=GenBank:WP_000412353.1;Name=WP_000412353.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460437.1;locus_tag=CFSAN001082_RS31645;product=amino acid permease;protein_id=WP_000412353.1;transl_table=11
NZ_APAH01000144.1	RefSeq	gene	2910	3245	.	-	.	ID=gene-CFSAN001082_RS31650;Name=CFSAN001082_RS31650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31650;old_locus_tag=CFSAN001082_07737
NZ_APAH01000144.1	Protein Homology	CDS	2910	3245	.	-	0	ID=cds-WP_000524877.1;Parent=gene-CFSAN001082_RS31650;Dbxref=GenBank:WP_000524877.1;Name=WP_000524877.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460436.1;locus_tag=CFSAN001082_RS31650;product=GlpM family protein;protein_id=WP_000524877.1;transl_table=11
NZ_APAH01000144.1	RefSeq	gene	3372	4103	.	+	.	ID=gene-CFSAN001082_RS31655;Name=rstA;gbkey=Gene;gene=rstA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31655;old_locus_tag=CFSAN001082_07742
NZ_APAH01000144.1	Protein Homology	CDS	3372	4103	.	+	0	ID=cds-WP_001080048.1;Parent=gene-CFSAN001082_RS31655;Dbxref=GenBank:WP_001080048.1;Name=WP_001080048.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=rstA;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460435.1;locus_tag=CFSAN001082_RS31655;product=two-component system response regulator RstA;protein_id=WP_001080048.1;transl_table=11
##sequence-region NZ_APAH01000145.1 1 3978
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000145.1	RefSeq	region	1	3978	.	+	.	ID=NZ_APAH01000145.1:1..3978;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000145.1	RefSeq	gene	1	202	.	-	.	ID=gene-CFSAN001082_RS31660;Name=CFSAN001082_RS31660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31660;old_locus_tag=CFSAN001082_07747;partial=true;start_range=.,1
NZ_APAH01000145.1	Protein Homology	CDS	1	202	.	-	0	ID=cds-WP_023254104.1;Parent=gene-CFSAN001082_RS31660;Dbxref=GenBank:WP_023254104.1;Name=WP_023254104.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461097.1;locus_tag=CFSAN001082_RS31660;partial=true;product=DUF2574 family protein;protein_id=WP_023254104.1;start_range=.,1;transl_table=11
NZ_APAH01000145.1	RefSeq	gene	480	1589	.	-	.	ID=gene-CFSAN001082_RS31665;Name=apbC;gbkey=Gene;gene=apbC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31665;old_locus_tag=CFSAN001082_07752
NZ_APAH01000145.1	Protein Homology	CDS	480	1589	.	-	0	ID=cds-WP_023254105.1;Parent=gene-CFSAN001082_RS31665;Dbxref=GenBank:WP_023254105.1;Name=WP_023254105.1;Ontology_term=GO:0016226,GO:0005524,GO:0016887,GO:0051536;gbkey=CDS;gene=apbC;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461098.1;locus_tag=CFSAN001082_RS31665;product=iron-sulfur cluster carrier protein ApbC;protein_id=WP_023254105.1;transl_table=11
NZ_APAH01000145.1	RefSeq	gene	1754	3787	.	+	.	ID=gene-CFSAN001082_RS31670;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31670;old_locus_tag=CFSAN001082_07757
NZ_APAH01000145.1	Protein Homology	CDS	1754	3787	.	+	0	ID=cds-WP_001749139.1;Parent=gene-CFSAN001082_RS31670;Dbxref=GenBank:WP_001749139.1;Name=WP_001749139.1;Ontology_term=GO:0006431,GO:0000166,GO:0004825,GO:0005524;gbkey=CDS;gene=metG;go_function=nucleotide binding|0000166||IEA,methionine-tRNA ligase activity|0004825||IEA,ATP binding|0005524||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461099.1;locus_tag=CFSAN001082_RS31670;product=methionine--tRNA ligase;protein_id=WP_001749139.1;transl_table=11
##sequence-region NZ_APAH01000146.1 1 10041
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000146.1	RefSeq	region	1	10041	.	+	.	ID=NZ_APAH01000146.1:1..10041;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000146.1	RefSeq	pseudogene	1	307	.	+	.	ID=gene-CFSAN001082_RS31675;Name=CFSAN001082_RS31675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS31675;old_locus_tag=CFSAN001082_07762;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000146.1	Protein Homology	CDS	1	307	.	+	1	ID=cds-CFSAN001082_RS31675;Parent=gene-CFSAN001082_RS31675;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460513.1;locus_tag=CFSAN001082_RS31675;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000146.1	RefSeq	gene	631	1779	.	+	.	ID=gene-CFSAN001082_RS31680;Name=CFSAN001082_RS31680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31680;old_locus_tag=CFSAN001082_07767
NZ_APAH01000146.1	GeneMarkS-2+	CDS	631	1779	.	+	0	ID=cds-WP_023182134.1;Parent=gene-CFSAN001082_RS31680;Dbxref=GenBank:WP_023182134.1;Name=WP_023182134.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS31680;product=hypothetical protein;protein_id=WP_023182134.1;transl_table=11
NZ_APAH01000146.1	RefSeq	pseudogene	1979	2424	.	+	.	ID=gene-CFSAN001082_RS0123230;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0123230;pseudo=true
NZ_APAH01000146.1	Protein Homology	CDS	1979	2424	.	+	0	ID=cds-CFSAN001082_RS0123230;Parent=gene-CFSAN001082_RS0123230;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;gene=tnpA;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459923.1;locus_tag=CFSAN001082_RS0123230;product=IS200/IS605 family transposase;pseudo=true;transl_table=11
NZ_APAH01000146.1	RefSeq	gene	2777	3757	.	-	.	ID=gene-CFSAN001082_RS31685;Name=CFSAN001082_RS31685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31685;old_locus_tag=CFSAN001082_07777
NZ_APAH01000146.1	Protein Homology	CDS	2777	3757	.	-	0	ID=cds-WP_017441349.1;Parent=gene-CFSAN001082_RS31685;Dbxref=GenBank:WP_017441349.1;Name=WP_017441349.1;Ontology_term=GO:0004497,GO:0010181,GO:0016703;gbkey=CDS;go_function=monooxygenase activity|0004497||IEA,FMN binding|0010181||IEA,oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)|0016703||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441349.1;locus_tag=CFSAN001082_RS31685;product=NAD(P)H-dependent flavin oxidoreductase;protein_id=WP_017441349.1;transl_table=11
NZ_APAH01000146.1	RefSeq	gene	3931	4839	.	-	.	ID=gene-CFSAN001082_RS31690;Name=CFSAN001082_RS31690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31690;old_locus_tag=CFSAN001082_07782
NZ_APAH01000146.1	Protein Homology	CDS	3931	4839	.	-	0	ID=cds-WP_023254107.1;Parent=gene-CFSAN001082_RS31690;Dbxref=GenBank:WP_023254107.1;Name=WP_023254107.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001176636.1;locus_tag=CFSAN001082_RS31690;product=LysR family transcriptional regulator;protein_id=WP_023254107.1;transl_table=11
NZ_APAH01000146.1	RefSeq	gene	5241	5429	.	+	.	ID=gene-CFSAN001082_RS31695;Name=CFSAN001082_RS31695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31695;old_locus_tag=CFSAN001082_07787
NZ_APAH01000146.1	Protein Homology	CDS	5241	5429	.	+	0	ID=cds-WP_023254108.1;Parent=gene-CFSAN001082_RS31695;Dbxref=GenBank:WP_023254108.1;Name=WP_023254108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001276020.1;locus_tag=CFSAN001082_RS31695;product=DUF29 family protein;protein_id=WP_023254108.1;transl_table=11
NZ_APAH01000146.1	RefSeq	gene	5704	6036	.	-	.	ID=gene-CFSAN001082_RS31700;Name=CFSAN001082_RS31700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31700;old_locus_tag=CFSAN001082_07792
NZ_APAH01000146.1	Protein Homology	CDS	5704	6036	.	-	0	ID=cds-WP_023254109.1;Parent=gene-CFSAN001082_RS31700;Dbxref=GenBank:WP_023254109.1;Name=WP_023254109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000253166.1;locus_tag=CFSAN001082_RS31700;product=DUF1493 family protein;protein_id=WP_023254109.1;transl_table=11
NZ_APAH01000146.1	RefSeq	pseudogene	6126	6230	.	-	.	ID=gene-CFSAN001082_RS48800;Name=CFSAN001082_RS48800;end_range=6230,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48800;partial=true;pseudo=true;start_range=.,6126
NZ_APAH01000146.1	Protein Homology	CDS	6126	6230	.	-	0	ID=cds-CFSAN001082_RS48800;Parent=gene-CFSAN001082_RS48800;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=6230,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612214.1;locus_tag=CFSAN001082_RS48800;partial=true;product=IS110 family transposase;pseudo=true;start_range=.,6126;transl_table=11
NZ_APAH01000146.1	RefSeq	pseudogene	6586	6792	.	+	.	ID=gene-CFSAN001082_RS31705;Name=CFSAN001082_RS31705;end_range=6792,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS31705;old_locus_tag=CFSAN001082_07797;partial=true;pseudo=true
NZ_APAH01000146.1	Protein Homology	CDS	6586	6792	.	+	0	ID=cds-CFSAN001082_RS31705;Parent=gene-CFSAN001082_RS31705;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=6792,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001713331.1;locus_tag=CFSAN001082_RS31705;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000146.1	RefSeq	gene	7066	7455	.	+	.	ID=gene-CFSAN001082_RS31710;Name=CFSAN001082_RS31710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31710;old_locus_tag=CFSAN001082_07802
NZ_APAH01000146.1	Protein Homology	CDS	7066	7455	.	+	0	ID=cds-WP_001044696.1;Parent=gene-CFSAN001082_RS31710;Dbxref=GenBank:WP_001044696.1;Name=WP_001044696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441353.1;locus_tag=CFSAN001082_RS31710;product=hypothetical protein;protein_id=WP_001044696.1;transl_table=11
NZ_APAH01000146.1	RefSeq	gene	7458	7811	.	+	.	ID=gene-CFSAN001082_RS48805;Name=CFSAN001082_RS48805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48805;old_locus_tag=CFSAN001082_07807
NZ_APAH01000146.1	Protein Homology	CDS	7458	7811	.	+	0	ID=cds-WP_000418733.1;Parent=gene-CFSAN001082_RS48805;Dbxref=GenBank:WP_000418733.1;Name=WP_000418733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000418733.1;locus_tag=CFSAN001082_RS48805;product=hypothetical protein;protein_id=WP_000418733.1;transl_table=11
NZ_APAH01000146.1	RefSeq	gene	8224	8472	.	+	.	ID=gene-CFSAN001082_RS31720;Name=CFSAN001082_RS31720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31720;old_locus_tag=CFSAN001082_07812
NZ_APAH01000146.1	Protein Homology	CDS	8224	8472	.	+	0	ID=cds-WP_000885424.1;Parent=gene-CFSAN001082_RS31720;Dbxref=GenBank:WP_000885424.1;Name=WP_000885424.1;Ontology_term=GO:0006355,GO:0045927,GO:0003677,GO:0097351,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=DNA binding|0003677||IEA,toxin sequestering activity|0097351||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,positive regulation of growth|0045927||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460511.1;locus_tag=CFSAN001082_RS31720;product=type II toxin-antitoxin system Phd/YefM family antitoxin;protein_id=WP_000885424.1;transl_table=11
NZ_APAH01000146.1	RefSeq	gene	8462	8746	.	+	.	ID=gene-CFSAN001082_RS31725;Name=CFSAN001082_RS31725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31725;old_locus_tag=CFSAN001082_07817
NZ_APAH01000146.1	Protein Homology	CDS	8462	8746	.	+	0	ID=cds-WP_000221343.1;Parent=gene-CFSAN001082_RS31725;Dbxref=GenBank:WP_000221343.1;Name=WP_000221343.1;Ontology_term=GO:0017148,GO:0004521,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=RNA endonuclease activity|0004521||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460510.1;locus_tag=CFSAN001082_RS31725;product=type II toxin-antitoxin system RelE family toxin;protein_id=WP_000221343.1;transl_table=11
NZ_APAH01000146.1	RefSeq	gene	8917	9306	.	+	.	ID=gene-CFSAN001082_RS31730;Name=CFSAN001082_RS31730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31730;old_locus_tag=CFSAN001082_07822
NZ_APAH01000146.1	Protein Homology	CDS	8917	9306	.	+	0	ID=cds-WP_000194089.1;Parent=gene-CFSAN001082_RS31730;Dbxref=GenBank:WP_000194089.1;Name=WP_000194089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460509.1;locus_tag=CFSAN001082_RS31730;product=RidA family protein;protein_id=WP_000194089.1;transl_table=11
NZ_APAH01000146.1	RefSeq	gene	9364	10041	.	-	.	ID=gene-CFSAN001082_RS31735;Name=CFSAN001082_RS31735;end_range=10041,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31735;old_locus_tag=CFSAN001082_07827;partial=true
NZ_APAH01000146.1	Protein Homology	CDS	9364	10041	.	-	0	ID=cds-WP_023254110.1;Parent=gene-CFSAN001082_RS31735;Dbxref=GenBank:WP_023254110.1;Name=WP_023254110.1;Ontology_term=GO:0016740,GO:0016853;end_range=10041,.;gbkey=CDS;go_function=transferase activity|0016740||IEA,isomerase activity|0016853||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000954687.1;locus_tag=CFSAN001082_RS31735;partial=true;product=S-adenosylmethionine:tRNA ribosyltransferase-isomerase;protein_id=WP_023254110.1;transl_table=11
##sequence-region NZ_APAH01000147.1 1 14318
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000147.1	RefSeq	region	1	14318	.	+	.	ID=NZ_APAH01000147.1:1..14318;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000147.1	RefSeq	gene	84	2462	.	+	.	ID=gene-CFSAN001082_RS31745;Name=CFSAN001082_RS31745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31745;old_locus_tag=CFSAN001082_07832
NZ_APAH01000147.1	Protein Homology	CDS	84	2462	.	+	0	ID=cds-WP_023254111.1;Parent=gene-CFSAN001082_RS31745;Dbxref=GenBank:WP_023254111.1;Name=WP_023254111.1;Ontology_term=GO:0009389,GO:0030151,GO:0051539;gbkey=CDS;go_function=dimethyl sulfoxide reductase activity|0009389||IEA,molybdenum ion binding|0030151||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012664463.1;locus_tag=CFSAN001082_RS31745;product=DMSO/selenate family reductase complex A subunit;protein_id=WP_023254111.1;transl_table=11
NZ_APAH01000147.1	RefSeq	gene	2459	3088	.	+	.	ID=gene-CFSAN001082_RS31750;Name=CFSAN001082_RS31750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31750;old_locus_tag=CFSAN001082_07837
NZ_APAH01000147.1	Protein Homology	CDS	2459	3088	.	+	0	ID=cds-WP_000077436.1;Parent=gene-CFSAN001082_RS31750;Dbxref=GenBank:WP_000077436.1;Name=WP_000077436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461464.1;locus_tag=CFSAN001082_RS31750;product=DMSO/selenate family reductase complex B subunit;protein_id=WP_000077436.1;transl_table=11
NZ_APAH01000147.1	RefSeq	gene	3081	3890	.	+	.	ID=gene-CFSAN001082_RS31755;Name=CFSAN001082_RS31755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31755;old_locus_tag=CFSAN001082_07842
NZ_APAH01000147.1	Protein Homology	CDS	3081	3890	.	+	0	ID=cds-WP_023254112.1;Parent=gene-CFSAN001082_RS31755;Dbxref=GenBank:WP_023254112.1;Name=WP_023254112.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000544904.1;locus_tag=CFSAN001082_RS31755;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_023254112.1;transl_table=11
NZ_APAH01000147.1	RefSeq	gene	3890	4753	.	+	.	ID=gene-CFSAN001082_RS31760;Name=CFSAN001082_RS31760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31760;old_locus_tag=CFSAN001082_07847
NZ_APAH01000147.1	Protein Homology	CDS	3890	4753	.	+	0	ID=cds-WP_023254113.1;Parent=gene-CFSAN001082_RS31760;Dbxref=GenBank:WP_023254113.1;Name=WP_023254113.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461462.1;locus_tag=CFSAN001082_RS31760;product=4Fe-4S dicluster domain-containing protein;protein_id=WP_023254113.1;transl_table=11
NZ_APAH01000147.1	RefSeq	gene	4874	5305	.	+	.	ID=gene-CFSAN001082_RS31765;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31765;old_locus_tag=CFSAN001082_07852
NZ_APAH01000147.1	Protein Homology	CDS	4874	5305	.	+	0	ID=cds-WP_000963846.1;Parent=gene-CFSAN001082_RS31765;Dbxref=GenBank:WP_000963846.1;Name=WP_000963846.1;Ontology_term=GO:0004550;gbkey=CDS;gene=ndk;go_function=nucleoside diphosphate kinase activity|0004550||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000963848.1;locus_tag=CFSAN001082_RS31765;product=nucleoside-diphosphate kinase;protein_id=WP_000963846.1;transl_table=11
NZ_APAH01000147.1	RefSeq	gene	5512	6678	.	+	.	ID=gene-CFSAN001082_RS31770;Name=CFSAN001082_RS31770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31770;old_locus_tag=CFSAN001082_07857
NZ_APAH01000147.1	Protein Homology	CDS	5512	6678	.	+	0	ID=cds-WP_023254114.1;Parent=gene-CFSAN001082_RS31770;Dbxref=GenBank:WP_023254114.1;Name=WP_023254114.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461460.1;locus_tag=CFSAN001082_RS31770;product=bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN;protein_id=WP_023254114.1;transl_table=11
NZ_APAH01000147.1	RefSeq	gene	6970	7968	.	+	.	ID=gene-CFSAN001082_RS31775;Name=rodZ;gbkey=Gene;gene=rodZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31775;old_locus_tag=CFSAN001082_07862
NZ_APAH01000147.1	Protein Homology	CDS	6970	7968	.	+	0	ID=cds-WP_023254115.1;Parent=gene-CFSAN001082_RS31775;Dbxref=GenBank:WP_023254115.1;Name=WP_023254115.1;Ontology_term=GO:0008360,GO:0003677,GO:0016020;gbkey=CDS;gene=rodZ;go_component=membrane|0016020||IEA;go_function=DNA binding|0003677||IEA;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461459.1;locus_tag=CFSAN001082_RS31775;product=cytoskeleton protein RodZ;protein_id=WP_023254115.1;transl_table=11
NZ_APAH01000147.1	RefSeq	gene	7995	9113	.	+	.	ID=gene-CFSAN001082_RS31780;Name=ispG;gbkey=Gene;gene=ispG;gene_biotype=protein_coding;gene_synonym=gcpE;locus_tag=CFSAN001082_RS31780;old_locus_tag=CFSAN001082_07867
NZ_APAH01000147.1	Protein Homology	CDS	7995	9113	.	+	0	ID=cds-WP_000551815.1;Parent=gene-CFSAN001082_RS31780;Dbxref=GenBank:WP_000551815.1;Name=WP_000551815.1;Ontology_term=GO:0008152,GO:0046429;gbkey=CDS;gene=ispG;go_function=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (ferredoxin)|0046429||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461458.1;locus_tag=CFSAN001082_RS31780;product=flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase;protein_id=WP_000551815.1;transl_table=11
NZ_APAH01000147.1	RefSeq	gene	9224	10498	.	+	.	ID=gene-CFSAN001082_RS31785;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31785;old_locus_tag=CFSAN001082_07872
NZ_APAH01000147.1	Protein Homology	CDS	9224	10498	.	+	0	ID=cds-WP_001107139.1;Parent=gene-CFSAN001082_RS31785;Dbxref=GenBank:WP_001107139.1;Name=WP_001107139.1;Ontology_term=GO:0006427,GO:0004821,GO:0005524,GO:0005737;gbkey=CDS;gene=hisS;go_component=cytoplasm|0005737||IEA;go_function=histidine-tRNA ligase activity|0004821||IEA,ATP binding|0005524||IEA;go_process=histidyl-tRNA aminoacylation|0006427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461457.1;locus_tag=CFSAN001082_RS31785;product=histidine--tRNA ligase;protein_id=WP_001107139.1;transl_table=11
NZ_APAH01000147.1	RefSeq	gene	10512	11132	.	+	.	ID=gene-CFSAN001082_RS31790;Name=CFSAN001082_RS31790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31790;old_locus_tag=CFSAN001082_07877
NZ_APAH01000147.1	Protein Homology	CDS	10512	11132	.	+	0	ID=cds-WP_000409190.1;Parent=gene-CFSAN001082_RS31790;Dbxref=GenBank:WP_000409190.1;Name=WP_000409190.1;Ontology_term=GO:0005515,GO:0044877;gbkey=CDS;go_function=protein binding|0005515||IEA,protein-containing complex binding|0044877||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461456.1;locus_tag=CFSAN001082_RS31790;product=YfgM family protein;protein_id=WP_000409190.1;transl_table=11
NZ_APAH01000147.1	RefSeq	gene	11143	12321	.	+	.	ID=gene-CFSAN001082_RS31795;Name=bamB;gbkey=Gene;gene=bamB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31795;old_locus_tag=CFSAN001082_07882
NZ_APAH01000147.1	Protein Homology	CDS	11143	12321	.	+	0	ID=cds-WP_001177072.1;Parent=gene-CFSAN001082_RS31795;Dbxref=GenBank:WP_001177072.1;Name=WP_001177072.1;Ontology_term=GO:0005515;gbkey=CDS;gene=bamB;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461455.1;locus_tag=CFSAN001082_RS31795;product=outer membrane protein assembly factor BamB;protein_id=WP_001177072.1;transl_table=11
NZ_APAH01000147.1	RefSeq	gene	12438	13910	.	+	.	ID=gene-CFSAN001082_RS31800;Name=der;gbkey=Gene;gene=der;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31800;old_locus_tag=CFSAN001082_07887
NZ_APAH01000147.1	Protein Homology	CDS	12438	13910	.	+	0	ID=cds-WP_000249411.1;Parent=gene-CFSAN001082_RS31800;Dbxref=GenBank:WP_000249411.1;Name=WP_000249411.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=der;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461454.1;locus_tag=CFSAN001082_RS31800;product=ribosome biogenesis GTPase Der;protein_id=WP_000249411.1;transl_table=11
NZ_APAH01000147.1	RefSeq	gene	13999	14220	.	+	.	ID=gene-CFSAN001082_RS31805;Name=CFSAN001082_RS31805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31805;old_locus_tag=CFSAN001082_07892
NZ_APAH01000147.1	Protein Homology	CDS	13999	14220	.	+	0	ID=cds-WP_000406469.1;Parent=gene-CFSAN001082_RS31805;Dbxref=GenBank:WP_000406469.1;Name=WP_000406469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461453.1;locus_tag=CFSAN001082_RS31805;product=zinc ribbon domain-containing protein;protein_id=WP_000406469.1;transl_table=11
##sequence-region NZ_APAH01000148.1 1 10973
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000148.1	RefSeq	region	1	10973	.	+	.	ID=NZ_APAH01000148.1:1..10973;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000148.1	RefSeq	gene	34	110	.	-	.	ID=gene-CFSAN001082_RS31810;Name=CFSAN001082_RS31810;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS31810;old_locus_tag=CFSAN001082_t07964
NZ_APAH01000148.1	tRNAscan-SE	tRNA	34	110	.	-	.	ID=rna-CFSAN001082_RS31810;Parent=gene-CFSAN001082_RS31810;anticodon=(pos:complement(74..76));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS31810;product=tRNA-Arg
NZ_APAH01000148.1	tRNAscan-SE	exon	34	110	.	-	.	ID=exon-CFSAN001082_RS31810-1;Parent=rna-CFSAN001082_RS31810;anticodon=(pos:complement(74..76));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS31810;product=tRNA-Arg
NZ_APAH01000148.1	RefSeq	gene	119	445	.	-	.	ID=gene-CFSAN001082_RS31815;Name=CFSAN001082_RS31815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31815;old_locus_tag=CFSAN001082_07897
NZ_APAH01000148.1	Protein Homology	CDS	119	445	.	-	0	ID=cds-WP_023254116.1;Parent=gene-CFSAN001082_RS31815;Dbxref=GenBank:WP_023254116.1;Name=WP_023254116.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460228.1;locus_tag=CFSAN001082_RS31815;product=four-helix bundle copper-binding protein;protein_id=WP_023254116.1;transl_table=11
NZ_APAH01000148.1	RefSeq	gene	639	1772	.	+	.	ID=gene-CFSAN001082_RS31820;Name=CFSAN001082_RS31820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31820;old_locus_tag=CFSAN001082_07902
NZ_APAH01000148.1	Protein Homology	CDS	639	1772	.	+	0	ID=cds-WP_000456065.1;Parent=gene-CFSAN001082_RS31820;Dbxref=GenBank:WP_000456065.1;Name=WP_000456065.1;Ontology_term=GO:0055085,GO:0008381,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=mechanosensitive monoatomic ion channel activity|0008381||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460227.1;locus_tag=CFSAN001082_RS31820;product=mechanosensitive ion channel family protein;protein_id=WP_000456065.1;transl_table=11
NZ_APAH01000148.1	RefSeq	gene	1854	2444	.	-	.	ID=gene-CFSAN001082_RS31825;Name=CFSAN001082_RS31825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31825;old_locus_tag=CFSAN001082_07907
NZ_APAH01000148.1	Protein Homology	CDS	1854	2444	.	-	0	ID=cds-WP_000947460.1;Parent=gene-CFSAN001082_RS31825;Dbxref=GenBank:WP_000947460.1;Name=WP_000947460.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460226.1;locus_tag=CFSAN001082_RS31825;product=ATP-binding cassette domain-containing protein;protein_id=WP_000947460.1;transl_table=11
NZ_APAH01000148.1	RefSeq	gene	2438	3235	.	-	.	ID=gene-CFSAN001082_RS31830;Name=CFSAN001082_RS31830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31830;old_locus_tag=CFSAN001082_07912
NZ_APAH01000148.1	Protein Homology	CDS	2438	3235	.	-	0	ID=cds-WP_023254117.1;Parent=gene-CFSAN001082_RS31830;Dbxref=GenBank:WP_023254117.1;Name=WP_023254117.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460225.1;locus_tag=CFSAN001082_RS31830;product=ATP-binding cassette domain-containing protein;protein_id=WP_023254117.1;transl_table=11
NZ_APAH01000148.1	RefSeq	gene	3229	4041	.	-	.	ID=gene-CFSAN001082_RS31835;Name=CFSAN001082_RS31835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31835;old_locus_tag=CFSAN001082_07917
NZ_APAH01000148.1	Protein Homology	CDS	3229	4041	.	-	0	ID=cds-WP_023254118.1;Parent=gene-CFSAN001082_RS31835;Dbxref=GenBank:WP_023254118.1;Name=WP_023254118.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460224.1;locus_tag=CFSAN001082_RS31835;product=ABC transporter permease;protein_id=WP_023254118.1;transl_table=11
NZ_APAH01000148.1	RefSeq	gene	4031	5005	.	-	.	ID=gene-CFSAN001082_RS31840;Name=CFSAN001082_RS31840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31840;old_locus_tag=CFSAN001082_07922
NZ_APAH01000148.1	Protein Homology	CDS	4031	5005	.	-	0	ID=cds-WP_001748353.1;Parent=gene-CFSAN001082_RS31840;Dbxref=GenBank:WP_001748353.1;Name=WP_001748353.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460223.1;locus_tag=CFSAN001082_RS31840;product=ABC transporter permease;protein_id=WP_001748353.1;transl_table=11
NZ_APAH01000148.1	RefSeq	gene	5005	6639	.	-	.	ID=gene-CFSAN001082_RS31845;Name=CFSAN001082_RS31845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31845;old_locus_tag=CFSAN001082_07927
NZ_APAH01000148.1	Protein Homology	CDS	5005	6639	.	-	0	ID=cds-WP_023254119.1;Parent=gene-CFSAN001082_RS31845;Dbxref=GenBank:WP_023254119.1;Name=WP_023254119.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460222.1;locus_tag=CFSAN001082_RS31845;product=ABC transporter substrate-binding protein;protein_id=WP_023254119.1;transl_table=11
NZ_APAH01000148.1	RefSeq	gene	7321	7635	.	+	.	ID=gene-CFSAN001082_RS31850;Name=CFSAN001082_RS31850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31850;old_locus_tag=CFSAN001082_07932
NZ_APAH01000148.1	Protein Homology	CDS	7321	7635	.	+	0	ID=cds-WP_000182479.1;Parent=gene-CFSAN001082_RS31850;Dbxref=GenBank:WP_000182479.1;Name=WP_000182479.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460221.1;locus_tag=CFSAN001082_RS31850;product=TRL-like family protein;protein_id=WP_000182479.1;transl_table=11
NZ_APAH01000148.1	RefSeq	gene	7784	8314	.	+	.	ID=gene-CFSAN001082_RS31855;Name=CFSAN001082_RS31855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31855;old_locus_tag=CFSAN001082_07937
NZ_APAH01000148.1	Protein Homology	CDS	7784	8314	.	+	0	ID=cds-WP_023254120.1;Parent=gene-CFSAN001082_RS31855;Dbxref=GenBank:WP_023254120.1;Name=WP_023254120.1;Ontology_term=GO:0022904,GO:0009055,GO:0020037,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460220.1;locus_tag=CFSAN001082_RS31855;product=cytochrome b;protein_id=WP_023254120.1;transl_table=11
NZ_APAH01000148.1	RefSeq	gene	8397	9440	.	-	.	ID=gene-CFSAN001082_RS31860;Name=CFSAN001082_RS31860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31860;old_locus_tag=CFSAN001082_07942
NZ_APAH01000148.1	Protein Homology	CDS	8397	9440	.	-	0	ID=cds-WP_023254121.1;Parent=gene-CFSAN001082_RS31860;Dbxref=GenBank:WP_023254121.1;Name=WP_023254121.1;Ontology_term=GO:0005975,GO:0004308,GO:0016997;gbkey=CDS;go_function=exo-alpha-sialidase activity|0004308||IEA,alpha-sialidase activity|0016997||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460219.1;locus_tag=CFSAN001082_RS31860;product=sialidase family protein;protein_id=WP_023254121.1;transl_table=11
NZ_APAH01000148.1	RefSeq	gene	9779	10246	.	-	.	ID=gene-CFSAN001082_RS31865;Name=CFSAN001082_RS31865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31865;old_locus_tag=CFSAN001082_07947
NZ_APAH01000148.1	Protein Homology	CDS	9779	10246	.	-	0	ID=cds-WP_001218118.1;Parent=gene-CFSAN001082_RS31865;Dbxref=GenBank:WP_001218118.1;Name=WP_001218118.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460218.1;locus_tag=CFSAN001082_RS31865;product=Hsp20 family protein;protein_id=WP_001218118.1;transl_table=11
NZ_APAH01000148.1	RefSeq	gene	10441	10671	.	-	.	ID=gene-CFSAN001082_RS47800;Name=CFSAN001082_RS47800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47800
NZ_APAH01000148.1	Protein Homology	CDS	10441	10671	.	-	0	ID=cds-WP_077908701.1;Parent=gene-CFSAN001082_RS47800;Dbxref=GenBank:WP_077908701.1;Name=WP_077908701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460217.1;locus_tag=CFSAN001082_RS47800;product=hypothetical protein;protein_id=WP_077908701.1;transl_table=11
##sequence-region NZ_APAH01000149.1 1 8661
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000149.1	RefSeq	region	1	8661	.	+	.	ID=NZ_APAH01000149.1:1..8661;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000149.1	RefSeq	gene	50	1987	.	+	.	ID=gene-CFSAN001082_RS31875;Name=CFSAN001082_RS31875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31875;old_locus_tag=CFSAN001082_07964
NZ_APAH01000149.1	Protein Homology	CDS	50	1987	.	+	0	ID=cds-WP_077911141.1;Parent=gene-CFSAN001082_RS31875;Dbxref=GenBank:WP_077911141.1;Name=WP_077911141.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_453701.1;locus_tag=CFSAN001082_RS31875;product=bifunctional 5-dehydro-2-deoxygluconokinase/5-dehydro-2-deoxyphosphogluconate aldolase;protein_id=WP_077911141.1;transl_table=11
NZ_APAH01000149.1	RefSeq	gene	2048	3214	.	+	.	ID=gene-CFSAN001082_RS31880;Name=CFSAN001082_RS31880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31880;old_locus_tag=CFSAN001082_07969
NZ_APAH01000149.1	Protein Homology	CDS	2048	3214	.	+	0	ID=cds-WP_001111174.1;Parent=gene-CFSAN001082_RS31880;Dbxref=GenBank:WP_001111174.1;Name=WP_001111174.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463289.1;locus_tag=CFSAN001082_RS31880;product=MFS transporter;protein_id=WP_001111174.1;transl_table=11
NZ_APAH01000149.1	RefSeq	gene	3211	4044	.	-	.	ID=gene-CFSAN001082_RS31885;Name=iolI1;gbkey=Gene;gene=iolI1;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31885;old_locus_tag=CFSAN001082_07974
NZ_APAH01000149.1	Protein Homology	CDS	3211	4044	.	-	0	ID=cds-WP_023254124.1;Parent=gene-CFSAN001082_RS31885;Dbxref=GenBank:WP_023254124.1;Name=WP_023254124.1;gbkey=CDS;gene=iolI1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463288.1;locus_tag=CFSAN001082_RS31885;product=2-keto-myo-inositol isomerase IolI1;protein_id=WP_023254124.1;transl_table=11
NZ_APAH01000149.1	RefSeq	gene	4045	5388	.	-	.	ID=gene-CFSAN001082_RS31890;Name=srfJ;gbkey=Gene;gene=srfJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31890;old_locus_tag=CFSAN001082_07979
NZ_APAH01000149.1	Protein Homology	CDS	4045	5388	.	-	0	ID=cds-WP_000678388.1;Parent=gene-CFSAN001082_RS31890;Dbxref=GenBank:WP_000678388.1;Name=WP_000678388.1;gbkey=CDS;gene=srfJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463287.1;locus_tag=CFSAN001082_RS31890;product=lysosomal glucosyl ceramidase-like type III secretion effector SrfJ;protein_id=WP_000678388.1;transl_table=11
NZ_APAH01000149.1	RefSeq	gene	5486	6496	.	-	.	ID=gene-CFSAN001082_RS31895;Name=iolG1;gbkey=Gene;gene=iolG1;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31895;old_locus_tag=CFSAN001082_07984
NZ_APAH01000149.1	Protein Homology	CDS	5486	6496	.	-	0	ID=cds-WP_000172704.1;Parent=gene-CFSAN001082_RS31895;Dbxref=GenBank:WP_000172704.1;Name=WP_000172704.1;gbkey=CDS;gene=iolG1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463286.1;locus_tag=CFSAN001082_RS31895;product=inositol 2-dehydrogenase IolG1;protein_id=WP_000172704.1;transl_table=11
NZ_APAH01000149.1	RefSeq	gene	6515	7435	.	-	.	ID=gene-CFSAN001082_RS31900;Name=iolE;gbkey=Gene;gene=iolE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31900;old_locus_tag=CFSAN001082_07989
NZ_APAH01000149.1	Protein Homology	CDS	6515	7435	.	-	0	ID=cds-WP_012601329.1;Parent=gene-CFSAN001082_RS31900;Dbxref=GenBank:WP_012601329.1;Name=WP_012601329.1;Ontology_term=GO:0019310,GO:0050114;gbkey=CDS;gene=iolE;go_function=myo-inosose-2 dehydratase activity|0050114||IEA;go_process=inositol catabolic process|0019310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463285.3;locus_tag=CFSAN001082_RS31900;product=myo-inosose-2 dehydratase;protein_id=WP_012601329.1;transl_table=11
NZ_APAH01000149.1	RefSeq	gene	7695	8519	.	-	.	ID=gene-CFSAN001082_RS31905;Name=reiD;gbkey=Gene;gene=reiD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31905;old_locus_tag=CFSAN001082_07994
NZ_APAH01000149.1	Protein Homology	CDS	7695	8519	.	-	0	ID=cds-WP_000332219.1;Parent=gene-CFSAN001082_RS31905;Dbxref=GenBank:WP_000332219.1;Name=WP_000332219.1;gbkey=CDS;gene=reiD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000332219.1;locus_tag=CFSAN001082_RS31905;product=myo-inositol utilization transcriptional regulator ReiD;protein_id=WP_000332219.1;transl_table=11
##sequence-region NZ_APAH01000150.1 1 5678
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000150.1	RefSeq	region	1	5678	.	+	.	ID=NZ_APAH01000150.1:1..5678;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000150.1	RefSeq	gene	1	1035	.	+	.	ID=gene-CFSAN001082_RS31910;Name=CFSAN001082_RS31910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31910;old_locus_tag=CFSAN001082_07999;partial=true;start_range=.,1
NZ_APAH01000150.1	Protein Homology	CDS	1	1035	.	+	0	ID=cds-WP_023254125.1;Parent=gene-CFSAN001082_RS31910;Dbxref=GenBank:WP_023254125.1;Name=WP_023254125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001271160.1;locus_tag=CFSAN001082_RS31910;partial=true;product=DUF4431 domain-containing protein;protein_id=WP_023254125.1;start_range=.,1;transl_table=11
NZ_APAH01000150.1	RefSeq	gene	1036	1377	.	+	.	ID=gene-CFSAN001082_RS31915;Name=CFSAN001082_RS31915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31915;old_locus_tag=CFSAN001082_08004
NZ_APAH01000150.1	Protein Homology	CDS	1036	1377	.	+	0	ID=cds-WP_017441548.1;Parent=gene-CFSAN001082_RS31915;Dbxref=GenBank:WP_017441548.1;Name=WP_017441548.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001531931.1;locus_tag=CFSAN001082_RS31915;product=hypothetical protein;protein_id=WP_017441548.1;transl_table=11
NZ_APAH01000150.1	RefSeq	gene	1392	2324	.	-	.	ID=gene-CFSAN001082_RS31920;Name=CFSAN001082_RS31920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31920;old_locus_tag=CFSAN001082_08009
NZ_APAH01000150.1	Protein Homology	CDS	1392	2324	.	-	0	ID=cds-WP_023254126.1;Parent=gene-CFSAN001082_RS31920;Dbxref=GenBank:WP_023254126.1;Name=WP_023254126.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000716797.1;locus_tag=CFSAN001082_RS31920;product=DUF4424 family protein;protein_id=WP_023254126.1;transl_table=11
NZ_APAH01000150.1	RefSeq	gene	2399	3538	.	+	.	ID=gene-CFSAN001082_RS31925;Name=CFSAN001082_RS31925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31925;old_locus_tag=CFSAN001082_08014
NZ_APAH01000150.1	Protein Homology	CDS	2399	3538	.	+	0	ID=cds-WP_023254127.1;Parent=gene-CFSAN001082_RS31925;Dbxref=GenBank:WP_023254127.1;Name=WP_023254127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441546.1;locus_tag=CFSAN001082_RS31925;product=DUF4431 domain-containing protein;protein_id=WP_023254127.1;transl_table=11
NZ_APAH01000150.1	RefSeq	pseudogene	3627	3719	.	+	.	ID=gene-CFSAN001082_RS49190;Name=CFSAN001082_RS49190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49190;partial=true;pseudo=true;start_range=.,3627
NZ_APAH01000150.1	Protein Homology	CDS	3627	3719	.	+	0	ID=cds-CFSAN001082_RS49190;Parent=gene-CFSAN001082_RS49190;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459163.1;locus_tag=CFSAN001082_RS49190;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3627;transl_table=11
NZ_APAH01000150.1	RefSeq	gene	3759	4223	.	-	.	ID=gene-CFSAN001082_RS31935;Name=CFSAN001082_RS31935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31935;old_locus_tag=CFSAN001082_08024
NZ_APAH01000150.1	Protein Homology	CDS	3759	4223	.	-	0	ID=cds-WP_023254128.1;Parent=gene-CFSAN001082_RS31935;Dbxref=GenBank:WP_023254128.1;Name=WP_023254128.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000110434.1;locus_tag=CFSAN001082_RS31935;product=hypothetical protein;protein_id=WP_023254128.1;transl_table=11
NZ_APAH01000150.1	RefSeq	gene	4633	4956	.	-	.	ID=gene-CFSAN001082_RS31940;Name=CFSAN001082_RS31940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31940;old_locus_tag=CFSAN001082_08029
NZ_APAH01000150.1	Protein Homology	CDS	4633	4956	.	-	0	ID=cds-WP_001101536.1;Parent=gene-CFSAN001082_RS31940;Dbxref=GenBank:WP_001101536.1;Name=WP_001101536.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001101536.1;locus_tag=CFSAN001082_RS31940;product=low molecular weight protein tyrosine phosphatase family protein;protein_id=WP_001101536.1;transl_table=11
NZ_APAH01000150.1	RefSeq	gene	5227	5589	.	+	.	ID=gene-CFSAN001082_RS31945;Name=yacL;gbkey=Gene;gene=yacL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31945;old_locus_tag=CFSAN001082_08039
NZ_APAH01000150.1	Protein Homology	CDS	5227	5589	.	+	0	ID=cds-WP_000384308.1;Parent=gene-CFSAN001082_RS31945;Dbxref=GenBank:WP_000384308.1;Name=WP_000384308.1;gbkey=CDS;gene=yacL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459165.1;locus_tag=CFSAN001082_RS31945;product=protein YacL;protein_id=WP_000384308.1;transl_table=11
##sequence-region NZ_APAH01000151.1 1 2028
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000151.1	RefSeq	region	1	2028	.	+	.	ID=NZ_APAH01000151.1:1..2028;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000151.1	RefSeq	pseudogene	114	191	.	+	.	ID=gene-CFSAN001082_RS48810;Name=CFSAN001082_RS48810;end_range=191,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48810;partial=true;pseudo=true
NZ_APAH01000151.1	Protein Homology	CDS	114	191	.	+	0	ID=cds-CFSAN001082_RS48810;Parent=gene-CFSAN001082_RS48810;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=191,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005226536.1;locus_tag=CFSAN001082_RS48810;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000151.1	RefSeq	gene	321	2028	.	-	.	ID=gene-CFSAN001082_RS31950;Name=sopA;end_range=2028,.;gbkey=Gene;gene=sopA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31950;old_locus_tag=CFSAN001082_08044;partial=true
NZ_APAH01000151.1	Protein Homology	CDS	321	2028	.	-	1	ID=cds-WP_023254129.1;Parent=gene-CFSAN001082_RS31950;Dbxref=GenBank:WP_023254129.1;Name=WP_023254129.1;end_range=2028,.;gbkey=CDS;gene=sopA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461011.1;locus_tag=CFSAN001082_RS31950;partial=true;product=SPI-1 type III secretion system effector HECT-type E3 ubiquitin transferase SopA;protein_id=WP_023254129.1;transl_table=11
##sequence-region NZ_APAH01000152.1 1 5525
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000152.1	RefSeq	region	1	5525	.	+	.	ID=NZ_APAH01000152.1:1..5525;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000152.1	RefSeq	gene	229	1989	.	-	.	ID=gene-CFSAN001082_RS31955;Name=ycaO;gbkey=Gene;gene=ycaO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31955;old_locus_tag=CFSAN001082_08049
NZ_APAH01000152.1	Protein Homology	CDS	229	1989	.	-	0	ID=cds-WP_000194822.1;Parent=gene-CFSAN001082_RS31955;Dbxref=GenBank:WP_000194822.1;Name=WP_000194822.1;gbkey=CDS;gene=ycaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459950.1;locus_tag=CFSAN001082_RS31955;product=30S ribosomal protein S12 methylthiotransferase accessory factor YcaO;protein_id=WP_000194822.1;transl_table=11
NZ_APAH01000152.1	RefSeq	gene	2126	2818	.	+	.	ID=gene-CFSAN001082_RS31960;Name=CFSAN001082_RS31960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31960;old_locus_tag=CFSAN001082_08054
NZ_APAH01000152.1	Protein Homology	CDS	2126	2818	.	+	0	ID=cds-WP_000642868.1;Parent=gene-CFSAN001082_RS31960;Dbxref=GenBank:WP_000642868.1;Name=WP_000642868.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459951.1;locus_tag=CFSAN001082_RS31960;product=DUF421 domain-containing protein;protein_id=WP_000642868.1;transl_table=11
NZ_APAH01000152.1	RefSeq	gene	3004	4092	.	+	.	ID=gene-CFSAN001082_RS31965;Name=serC;gbkey=Gene;gene=serC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31965;old_locus_tag=CFSAN001082_08059
NZ_APAH01000152.1	Protein Homology	CDS	3004	4092	.	+	0	ID=cds-WP_000079590.1;Parent=gene-CFSAN001082_RS31965;Dbxref=GenBank:WP_000079590.1;Name=WP_000079590.1;Ontology_term=GO:0006564,GO:0003824,GO:0004648;gbkey=CDS;gene=serC;go_function=catalytic activity|0003824||IEA,O-phospho-L-serine:2-oxoglutarate aminotransferase activity|0004648||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459952.1;locus_tag=CFSAN001082_RS31965;product=3-phosphoserine/phosphohydroxythreonine transaminase;protein_id=WP_000079590.1;transl_table=11
NZ_APAH01000152.1	RefSeq	gene	4162	5445	.	+	.	ID=gene-CFSAN001082_RS31970;Name=aroA;gbkey=Gene;gene=aroA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31970;old_locus_tag=CFSAN001082_08064
NZ_APAH01000152.1	Protein Homology	CDS	4162	5445	.	+	0	ID=cds-WP_023254130.1;Parent=gene-CFSAN001082_RS31970;Dbxref=GenBank:WP_023254130.1;Name=WP_023254130.1;Ontology_term=GO:0009073,GO:0003866;gbkey=CDS;gene=aroA;go_function=3-phosphoshikimate 1-carboxyvinyltransferase activity|0003866||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459953.1;locus_tag=CFSAN001082_RS31970;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=WP_023254130.1;transl_table=11
##sequence-region NZ_APAH01000153.1 1 19561
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000153.1	RefSeq	region	1	19561	.	+	.	ID=NZ_APAH01000153.1:1..19561;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000153.1	RefSeq	gene	1	1988	.	-	.	ID=gene-CFSAN001082_RS31975;Name=rsxC;gbkey=Gene;gene=rsxC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31975;old_locus_tag=CFSAN001082_08069;partial=true;start_range=.,1
NZ_APAH01000153.1	Protein Homology	CDS	1	1988	.	-	0	ID=cds-WP_023254131.1;Parent=gene-CFSAN001082_RS31975;Dbxref=GenBank:WP_023254131.1;Name=WP_023254131.1;Ontology_term=GO:0009055,GO:0051539,GO:0016020;gbkey=CDS;gene=rsxC;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460420.1;locus_tag=CFSAN001082_RS31975;partial=true;product=electron transport complex subunit RsxC;protein_id=WP_023254131.1;start_range=.,1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	1981	2559	.	-	.	ID=gene-CFSAN001082_RS31980;Name=rsxB;gbkey=Gene;gene=rsxB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31980;old_locus_tag=CFSAN001082_08074
NZ_APAH01000153.1	Protein Homology	CDS	1981	2559	.	-	0	ID=cds-WP_001092600.1;Parent=gene-CFSAN001082_RS31980;Dbxref=GenBank:WP_001092600.1;Name=WP_001092600.1;Ontology_term=GO:0022900,GO:0009055,GO:0051536;gbkey=CDS;gene=rsxB;go_function=electron transfer activity|0009055||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460421.1;locus_tag=CFSAN001082_RS31980;product=electron transport complex subunit RsxB;protein_id=WP_001092600.1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	2559	3140	.	-	.	ID=gene-CFSAN001082_RS31985;Name=rsxA;gbkey=Gene;gene=rsxA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31985;old_locus_tag=CFSAN001082_08079
NZ_APAH01000153.1	Protein Homology	CDS	2559	3140	.	-	0	ID=cds-WP_000133179.1;Parent=gene-CFSAN001082_RS31985;Dbxref=GenBank:WP_000133179.1;Name=WP_000133179.1;Ontology_term=GO:0022900,GO:0016020;gbkey=CDS;gene=rsxA;go_component=membrane|0016020||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017456621.1;locus_tag=CFSAN001082_RS31985;product=electron transport complex subunit RsxA;protein_id=WP_000133179.1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	3217	3657	.	-	.	ID=gene-CFSAN001082_RS31990;Name=CFSAN001082_RS31990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31990;old_locus_tag=CFSAN001082_08084
NZ_APAH01000153.1	Protein Homology	CDS	3217	3657	.	-	0	ID=cds-WP_000214061.1;Parent=gene-CFSAN001082_RS31990;Dbxref=GenBank:WP_000214061.1;Name=WP_000214061.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460423.1;locus_tag=CFSAN001082_RS31990;product=DUF2569 domain-containing protein;protein_id=WP_000214061.1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	3746	3961	.	-	.	ID=gene-CFSAN001082_RS31995;Name=ydgT;gbkey=Gene;gene=ydgT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS31995;old_locus_tag=CFSAN001082_08089
NZ_APAH01000153.1	Protein Homology	CDS	3746	3961	.	-	0	ID=cds-WP_000217946.1;Parent=gene-CFSAN001082_RS31995;Dbxref=GenBank:WP_000217946.1;Name=WP_000217946.1;gbkey=CDS;gene=ydgT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460424.3;locus_tag=CFSAN001082_RS31995;product=transcription modulator YdgT;protein_id=WP_000217946.1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	4259	4384	.	-	.	ID=gene-CFSAN001082_RS0123260;Name=blr;gbkey=Gene;gene=blr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123260
NZ_APAH01000153.1	Protein Homology	CDS	4259	4384	.	-	0	ID=cds-WP_001708800.1;Parent=gene-CFSAN001082_RS0123260;Dbxref=GenBank:WP_001708800.1;Name=WP_001708800.1;gbkey=CDS;gene=blr;inference=COORDINATES: similar to AA sequence:RefSeq:YP_025303.1;locus_tag=CFSAN001082_RS0123260;product=division septum protein Blr;protein_id=WP_001708800.1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	4592	5632	.	+	.	ID=gene-CFSAN001082_RS32000;Name=CFSAN001082_RS32000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32000;old_locus_tag=CFSAN001082_08094
NZ_APAH01000153.1	Protein Homology	CDS	4592	5632	.	+	0	ID=cds-WP_000998242.1;Parent=gene-CFSAN001082_RS32000;Dbxref=GenBank:WP_000998242.1;Name=WP_000998242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310359.2;locus_tag=CFSAN001082_RS32000;product=oxidoreductase;protein_id=WP_000998242.1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	5707	6708	.	-	.	ID=gene-CFSAN001082_RS32005;Name=add;gbkey=Gene;gene=add;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32005;old_locus_tag=CFSAN001082_08099
NZ_APAH01000153.1	Protein Homology	CDS	5707	6708	.	-	0	ID=cds-WP_000565566.1;Parent=gene-CFSAN001082_RS32005;Dbxref=GenBank:WP_000565566.1;Name=WP_000565566.1;Ontology_term=GO:0009168,GO:0004000;gbkey=CDS;gene=add;go_function=adenosine deaminase activity|0004000||IEA;go_process=purine ribonucleoside monophosphate biosynthetic process|0009168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460426.1;locus_tag=CFSAN001082_RS32005;product=adenosine deaminase;protein_id=WP_000565566.1;transl_table=11
NZ_APAH01000153.1	RefSeq	pseudogene	6926	7292	.	-	.	ID=gene-CFSAN001082_RS32010;Name=CFSAN001082_RS32010;end_range=7292,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS32010;old_locus_tag=CFSAN001082_08104;partial=true;pseudo=true
NZ_APAH01000153.1	Protein Homology	CDS	6926	7292	.	-	0	ID=cds-CFSAN001082_RS32010;Parent=gene-CFSAN001082_RS32010;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0009058,GO:0030170;end_range=7292,.;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310357.1;locus_tag=CFSAN001082_RS32010;partial=true;product=aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme;pseudo=true;transl_table=11
NZ_APAH01000153.1	RefSeq	pseudogene	7311	7913	.	+	.	ID=gene-CFSAN001082_RS32015;Name=malI;gbkey=Gene;gene=malI;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS32015;old_locus_tag=CFSAN001082_08109;partial=true;pseudo=true;start_range=.,7311
NZ_APAH01000153.1	Protein Homology	CDS	7311	7913	.	+	0	ID=cds-CFSAN001082_RS32015;Parent=gene-CFSAN001082_RS32015;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=malI;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416137.1;locus_tag=CFSAN001082_RS32015;partial=true;product=Mal regulon transcriptional regulator MalI;pseudo=true;start_range=.,7311;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	7971	9479	.	-	.	ID=gene-CFSAN001082_RS32020;Name=CFSAN001082_RS32020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32020;old_locus_tag=CFSAN001082_08114
NZ_APAH01000153.1	Protein Homology	CDS	7971	9479	.	-	0	ID=cds-WP_023254134.1;Parent=gene-CFSAN001082_RS32020;Dbxref=GenBank:WP_023254134.1;Name=WP_023254134.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460427.1;locus_tag=CFSAN001082_RS32020;product=YdgA family protein;protein_id=WP_023254134.1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	9582	10757	.	-	.	ID=gene-CFSAN001082_RS32025;Name=manA;gbkey=Gene;gene=manA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32025;old_locus_tag=CFSAN001082_08119
NZ_APAH01000153.1	Protein Homology	CDS	9582	10757	.	-	0	ID=cds-WP_001170624.1;Parent=gene-CFSAN001082_RS32025;Dbxref=GenBank:WP_001170624.1;Name=WP_001170624.1;Ontology_term=GO:0009298,GO:0004476,GO:0008270;gbkey=CDS;gene=manA;go_function=mannose-6-phosphate isomerase activity|0004476||IEA,zinc ion binding|0008270||IEA;go_process=GDP-mannose biosynthetic process|0009298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460428.1;locus_tag=CFSAN001082_RS32025;product=mannose-6-phosphate isomerase;protein_id=WP_001170624.1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	10957	12603	.	+	.	ID=gene-CFSAN001082_RS32030;Name=fumB;gbkey=Gene;gene=fumB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32030;old_locus_tag=CFSAN001082_08124
NZ_APAH01000153.1	Protein Homology	CDS	10957	12603	.	+	0	ID=cds-WP_000066609.1;Parent=gene-CFSAN001082_RS32030;Dbxref=GenBank:WP_000066609.1;Name=WP_000066609.1;gbkey=CDS;gene=fumB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000066594.1;locus_tag=CFSAN001082_RS32030;product=class I fumarate hydratase;protein_id=WP_000066609.1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	12771	14174	.	+	.	ID=gene-CFSAN001082_RS32035;Name=fumC;gbkey=Gene;gene=fumC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32035;old_locus_tag=CFSAN001082_08129
NZ_APAH01000153.1	Protein Homology	CDS	12771	14174	.	+	0	ID=cds-WP_000259117.1;Parent=gene-CFSAN001082_RS32035;Dbxref=GenBank:WP_000259117.1;Name=WP_000259117.1;Ontology_term=GO:0006106,GO:0004333,GO:0045239;gbkey=CDS;gene=fumC;go_component=tricarboxylic acid cycle heteromeric enzyme complex|0045239||IEA;go_function=fumarate hydratase activity|0004333||IEA;go_process=fumarate metabolic process|0006106||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460430.1;locus_tag=CFSAN001082_RS32035;product=class II fumarate hydratase;protein_id=WP_000259117.1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	14171	15100	.	-	.	ID=gene-CFSAN001082_RS32040;Name=tus;gbkey=Gene;gene=tus;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32040;old_locus_tag=CFSAN001082_08134
NZ_APAH01000153.1	Protein Homology	CDS	14171	15100	.	-	0	ID=cds-WP_000092489.1;Parent=gene-CFSAN001082_RS32040;Dbxref=GenBank:WP_000092489.1;Name=WP_000092489.1;Ontology_term=GO:0006274,GO:0003677,GO:0005737;gbkey=CDS;gene=tus;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA;go_process=DNA replication termination|0006274||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460431.1;locus_tag=CFSAN001082_RS32040;product=DNA replication terminus site-binding protein;protein_id=WP_000092489.1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	15176	16477	.	-	.	ID=gene-CFSAN001082_RS32045;Name=rstB;gbkey=Gene;gene=rstB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32045;old_locus_tag=CFSAN001082_08139
NZ_APAH01000153.1	Protein Homology	CDS	15176	16477	.	-	0	ID=cds-WP_023254135.1;Parent=gene-CFSAN001082_RS32045;Dbxref=GenBank:WP_023254135.1;Name=WP_023254135.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=rstB;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460432.1;locus_tag=CFSAN001082_RS32045;product=two-component system sensor histidine kinase RstB;protein_id=WP_023254135.1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	16588	18294	.	-	.	ID=gene-CFSAN001082_RS32050;Name=CFSAN001082_RS32050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32050;old_locus_tag=CFSAN001082_08144
NZ_APAH01000153.1	Protein Homology	CDS	16588	18294	.	-	0	ID=cds-WP_077911144.1;Parent=gene-CFSAN001082_RS32050;Dbxref=GenBank:WP_077911144.1;Name=WP_077911144.1;Ontology_term=GO:0016810,GO:0046872;gbkey=CDS;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460433.1;locus_tag=CFSAN001082_RS32050;product=amidohydrolase;protein_id=WP_077911144.1;transl_table=11
NZ_APAH01000153.1	RefSeq	gene	18447	19561	.	-	.	ID=gene-CFSAN001082_RS32055;Name=ompC;end_range=19561,.;gbkey=Gene;gene=ompC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32055;old_locus_tag=CFSAN001082_08149;partial=true
NZ_APAH01000153.1	Protein Homology	CDS	18447	19561	.	-	2	ID=cds-WP_023254137.1;Parent=gene-CFSAN001082_RS32055;Dbxref=GenBank:WP_023254137.1;Name=WP_023254137.1;Ontology_term=GO:0034220,GO:0015288;end_range=19561,.;gbkey=CDS;gene=ompC;go_function=porin activity|0015288||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460434.1;locus_tag=CFSAN001082_RS32055;partial=true;product=porin OmpC;protein_id=WP_023254137.1;transl_table=11
##sequence-region NZ_APAH01000154.1 1 2902
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000154.1	RefSeq	region	1	2902	.	+	.	ID=NZ_APAH01000154.1:1..2902;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000154.1	RefSeq	gene	76	579	.	+	.	ID=gene-CFSAN001082_RS32060;Name=CFSAN001082_RS32060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32060;old_locus_tag=CFSAN001082_08154
NZ_APAH01000154.1	Protein Homology	CDS	76	579	.	+	0	ID=cds-WP_001022822.1;Parent=gene-CFSAN001082_RS32060;Dbxref=GenBank:WP_001022822.1;Name=WP_001022822.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460688.1;locus_tag=CFSAN001082_RS32060;product=ferritin-like domain-containing protein;protein_id=WP_001022822.1;transl_table=11
NZ_APAH01000154.1	RefSeq	gene	653	1159	.	+	.	ID=gene-CFSAN001082_RS32065;Name=CFSAN001082_RS32065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32065;old_locus_tag=CFSAN001082_08159
NZ_APAH01000154.1	Protein Homology	CDS	653	1159	.	+	0	ID=cds-WP_001109977.1;Parent=gene-CFSAN001082_RS32065;Dbxref=GenBank:WP_001109977.1;Name=WP_001109977.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460689.1;locus_tag=CFSAN001082_RS32065;product=ferritin-like domain-containing protein;protein_id=WP_001109977.1;transl_table=11
NZ_APAH01000154.1	RefSeq	gene	1179	2057	.	+	.	ID=gene-CFSAN001082_RS32070;Name=CFSAN001082_RS32070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32070;old_locus_tag=CFSAN001082_08164
NZ_APAH01000154.1	Protein Homology	CDS	1179	2057	.	+	0	ID=cds-WP_000488354.1;Parent=gene-CFSAN001082_RS32070;Dbxref=GenBank:WP_000488354.1;Name=WP_000488354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460690.1;locus_tag=CFSAN001082_RS32070;product=manganese catalase family protein;protein_id=WP_000488354.1;transl_table=11
NZ_APAH01000154.1	RefSeq	gene	2139	2777	.	-	.	ID=gene-CFSAN001082_RS32075;Name=ompW;gbkey=Gene;gene=ompW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32075;old_locus_tag=CFSAN001082_08169
NZ_APAH01000154.1	Protein Homology	CDS	2139	2777	.	-	0	ID=cds-WP_000714799.1;Parent=gene-CFSAN001082_RS32075;Dbxref=GenBank:WP_000714799.1;Name=WP_000714799.1;Ontology_term=GO:0019867;gbkey=CDS;gene=ompW;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460691.1;locus_tag=CFSAN001082_RS32075;product=outer membrane protein OmpW;protein_id=WP_000714799.1;transl_table=11
##sequence-region NZ_APAH01000155.1 1 18742
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000155.1	RefSeq	region	1	18742	.	+	.	ID=NZ_APAH01000155.1:1..18742;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000155.1	RefSeq	gene	1	425	.	-	.	ID=gene-CFSAN001082_RS32080;Name=CFSAN001082_RS32080;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS32080;old_locus_tag=CFSAN001082_r08271;partial=true;start_range=.,1
NZ_APAH01000155.1	cmsearch	rRNA	1	425	.	-	.	ID=rna-CFSAN001082_RS32080;Parent=gene-CFSAN001082_RS32080;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS32080;partial=true;product=16S ribosomal RNA;start_range=.,1
NZ_APAH01000155.1	cmsearch	exon	1	425	.	-	.	ID=exon-CFSAN001082_RS32080-1;Parent=rna-CFSAN001082_RS32080;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS32080;partial=true;product=16S ribosomal RNA;start_range=.,1
NZ_APAH01000155.1	RefSeq	gene	1049	2638	.	+	.	ID=gene-CFSAN001082_RS32085;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32085;old_locus_tag=CFSAN001082_08174
NZ_APAH01000155.1	Protein Homology	CDS	1049	2638	.	+	0	ID=cds-WP_023254138.1;Parent=gene-CFSAN001082_RS32085;Dbxref=GenBank:WP_023254138.1;Name=WP_023254138.1;Ontology_term=GO:0009152,GO:0003937,GO:0004643;gbkey=CDS;gene=purH;go_function=IMP cyclohydrolase activity|0003937||IEA,phosphoribosylaminoimidazolecarboxamide formyltransferase activity|0004643||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132841.1;locus_tag=CFSAN001082_RS32085;product=bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase;protein_id=WP_023254138.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	2654	3943	.	+	.	ID=gene-CFSAN001082_RS32090;Name=purD;gbkey=Gene;gene=purD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32090;old_locus_tag=CFSAN001082_08179
NZ_APAH01000155.1	Protein Homology	CDS	2654	3943	.	+	0	ID=cds-WP_023254139.1;Parent=gene-CFSAN001082_RS32090;Dbxref=GenBank:WP_023254139.1;Name=WP_023254139.1;Ontology_term=GO:0009113,GO:0004637;gbkey=CDS;gene=purD;go_function=phosphoribosylamine-glycine ligase activity|0004637||IEA;go_process=purine nucleobase biosynthetic process|0009113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463044.1;locus_tag=CFSAN001082_RS32090;product=phosphoribosylamine--glycine ligase;protein_id=WP_023254139.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	3940	5265	.	-	.	ID=gene-CFSAN001082_RS32095;Name=zraR;gbkey=Gene;gene=zraR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32095;old_locus_tag=CFSAN001082_08184
NZ_APAH01000155.1	Protein Homology	CDS	3940	5265	.	-	0	ID=cds-WP_000617928.1;Parent=gene-CFSAN001082_RS32095;Dbxref=GenBank:WP_000617928.1;Name=WP_000617928.1;Ontology_term=GO:0000160,GO:0006355,GO:0043565;gbkey=CDS;gene=zraR;go_function=sequence-specific DNA binding|0043565||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463043.1;locus_tag=CFSAN001082_RS32095;product=sigma-54-dependent response regulator transcription factor ZraR;protein_id=WP_000617928.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	5271	6668	.	-	.	ID=gene-CFSAN001082_RS32100;Name=zraS;gbkey=Gene;gene=zraS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32100;old_locus_tag=CFSAN001082_08189
NZ_APAH01000155.1	Protein Homology	CDS	5271	6668	.	-	0	ID=cds-WP_001532197.1;Parent=gene-CFSAN001082_RS32100;Dbxref=GenBank:WP_001532197.1;Name=WP_001532197.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155;gbkey=CDS;gene=zraS;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463042.1;locus_tag=CFSAN001082_RS32100;product=two-component system sensor histidine kinase ZraS;protein_id=WP_001532197.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	6922	7377	.	+	.	ID=gene-CFSAN001082_RS32105;Name=zraP;gbkey=Gene;gene=zraP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32105;old_locus_tag=CFSAN001082_08194
NZ_APAH01000155.1	Protein Homology	CDS	6922	7377	.	+	0	ID=cds-WP_000828129.1;Parent=gene-CFSAN001082_RS32105;Dbxref=GenBank:WP_000828129.1;Name=WP_000828129.1;gbkey=CDS;gene=zraP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463041.1;locus_tag=CFSAN001082_RS32105;product=zinc resistance sensor/chaperone ZraP;protein_id=WP_000828129.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	7419	8111	.	-	.	ID=gene-CFSAN001082_RS32110;Name=CFSAN001082_RS32110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32110;old_locus_tag=CFSAN001082_08199
NZ_APAH01000155.1	Protein Homology	CDS	7419	8111	.	-	0	ID=cds-WP_001083940.1;Parent=gene-CFSAN001082_RS32110;Dbxref=GenBank:WP_001083940.1;Name=WP_001083940.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463040.1;locus_tag=CFSAN001082_RS32110;product=DUF1481 domain-containing protein;protein_id=WP_001083940.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	8123	8395	.	-	.	ID=gene-CFSAN001082_RS32115;Name=hupA;gbkey=Gene;gene=hupA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32115;old_locus_tag=CFSAN001082_08204
NZ_APAH01000155.1	Protein Homology	CDS	8123	8395	.	-	0	ID=cds-WP_001044509.1;Parent=gene-CFSAN001082_RS32115;Dbxref=GenBank:WP_001044509.1;Name=WP_001044509.1;gbkey=CDS;gene=hupA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017460010.1;locus_tag=CFSAN001082_RS32115;product=nucleoid-associated protein HU-alpha;protein_id=WP_001044509.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	8582	9172	.	-	.	ID=gene-CFSAN001082_RS32120;Name=CFSAN001082_RS32120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32120;old_locus_tag=CFSAN001082_08209
NZ_APAH01000155.1	Protein Homology	CDS	8582	9172	.	-	0	ID=cds-WP_000940092.1;Parent=gene-CFSAN001082_RS32120;Dbxref=GenBank:WP_000940092.1;Name=WP_000940092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463038.1;locus_tag=CFSAN001082_RS32120;product=YjaG family protein;protein_id=WP_000940092.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	9214	9885	.	-	.	ID=gene-CFSAN001082_RS32125;Name=nfi;gbkey=Gene;gene=nfi;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32125;old_locus_tag=CFSAN001082_08214
NZ_APAH01000155.1	Protein Homology	CDS	9214	9885	.	-	0	ID=cds-WP_000362359.1;Parent=gene-CFSAN001082_RS32125;Dbxref=GenBank:WP_000362359.1;Name=WP_000362359.1;Note=cleaves DNA at apurinic or apyrimidinic sites;Ontology_term=GO:0006281,GO:0004519;gbkey=CDS;gene=nfi;go_function=endonuclease activity|0004519||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463037.1;locus_tag=CFSAN001082_RS32125;product=deoxyribonuclease V;protein_id=WP_000362359.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	9895	10959	.	-	.	ID=gene-CFSAN001082_RS32130;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32130;old_locus_tag=CFSAN001082_08219
NZ_APAH01000155.1	Protein Homology	CDS	9895	10959	.	-	0	ID=cds-WP_000137620.1;Parent=gene-CFSAN001082_RS32130;Dbxref=GenBank:WP_000137620.1;Name=WP_000137620.1;Ontology_term=GO:0006779,GO:0004853;gbkey=CDS;gene=hemE;go_function=uroporphyrinogen decarboxylase activity|0004853||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463036.2;locus_tag=CFSAN001082_RS32130;product=uroporphyrinogen decarboxylase;protein_id=WP_000137620.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	11000	11773	.	-	.	ID=gene-CFSAN001082_RS32135;Name=nudC;gbkey=Gene;gene=nudC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32135;old_locus_tag=CFSAN001082_08224
NZ_APAH01000155.1	Protein Homology	CDS	11000	11773	.	-	0	ID=cds-WP_000373959.1;Parent=gene-CFSAN001082_RS32135;Dbxref=GenBank:WP_000373959.1;Name=WP_000373959.1;Ontology_term=GO:0000210,GO:0016787;gbkey=CDS;gene=nudC;go_function=NAD+ diphosphatase activity|0000210||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463035.1;locus_tag=CFSAN001082_RS32135;product=NAD(+) diphosphatase;protein_id=WP_000373959.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	11866	12354	.	+	.	ID=gene-CFSAN001082_RS32140;Name=CFSAN001082_RS32140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32140;old_locus_tag=CFSAN001082_08229
NZ_APAH01000155.1	Protein Homology	CDS	11866	12354	.	+	0	ID=cds-WP_023254140.1;Parent=gene-CFSAN001082_RS32140;Dbxref=GenBank:WP_023254140.1;Name=WP_023254140.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463034.1;locus_tag=CFSAN001082_RS32140;product=Rsd/AlgQ family anti-sigma factor;protein_id=WP_023254140.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	12718	14613	.	+	.	ID=gene-CFSAN001082_RS32145;Name=thiC;gbkey=Gene;gene=thiC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32145;old_locus_tag=CFSAN001082_08234
NZ_APAH01000155.1	Protein Homology	CDS	12718	14613	.	+	0	ID=cds-WP_023254141.1;Parent=gene-CFSAN001082_RS32145;Dbxref=GenBank:WP_023254141.1;Name=WP_023254141.1;Ontology_term=GO:0009228,GO:0051536;gbkey=CDS;gene=thiC;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001541272.1;locus_tag=CFSAN001082_RS32145;product=phosphomethylpyrimidine synthase ThiC;protein_id=WP_023254141.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	14613	15248	.	+	.	ID=gene-CFSAN001082_RS32150;Name=thiE;gbkey=Gene;gene=thiE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32150;old_locus_tag=CFSAN001082_08239
NZ_APAH01000155.1	Protein Homology	CDS	14613	15248	.	+	0	ID=cds-WP_023254142.1;Parent=gene-CFSAN001082_RS32150;Dbxref=GenBank:WP_023254142.1;Name=WP_023254142.1;Ontology_term=GO:0009228,GO:0004789;gbkey=CDS;gene=thiE;go_function=thiamine-phosphate diphosphorylase activity|0004789||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463032.1;locus_tag=CFSAN001082_RS32150;product=thiamine phosphate synthase;protein_id=WP_023254142.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	15241	15999	.	+	.	ID=gene-CFSAN001082_RS32155;Name=CFSAN001082_RS32155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32155;old_locus_tag=CFSAN001082_08244
NZ_APAH01000155.1	Protein Homology	CDS	15241	15999	.	+	0	ID=cds-WP_000999779.1;Parent=gene-CFSAN001082_RS32155;Dbxref=GenBank:WP_000999779.1;Name=WP_000999779.1;Ontology_term=GO:0016779;gbkey=CDS;go_function=nucleotidyltransferase activity|0016779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463031.1;locus_tag=CFSAN001082_RS32155;product=HesA/MoeB/ThiF family protein;protein_id=WP_000999779.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	15980	16180	.	+	.	ID=gene-CFSAN001082_RS32160;Name=thiS;gbkey=Gene;gene=thiS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32160;old_locus_tag=CFSAN001082_08249
NZ_APAH01000155.1	Protein Homology	CDS	15980	16180	.	+	0	ID=cds-WP_001583973.1;Parent=gene-CFSAN001082_RS32160;Dbxref=GenBank:WP_001583973.1;Name=WP_001583973.1;Ontology_term=GO:0009228,GO:0003824;gbkey=CDS;gene=thiS;go_function=catalytic activity|0003824||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463030.1;locus_tag=CFSAN001082_RS32160;product=sulfur carrier protein ThiS;protein_id=WP_001583973.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	16182	16952	.	+	.	ID=gene-CFSAN001082_RS32165;Name=thiG;gbkey=Gene;gene=thiG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32165;old_locus_tag=CFSAN001082_08254
NZ_APAH01000155.1	Protein Homology	CDS	16182	16952	.	+	0	ID=cds-WP_023254143.1;Parent=gene-CFSAN001082_RS32165;Dbxref=GenBank:WP_023254143.1;Name=WP_023254143.1;gbkey=CDS;gene=thiG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463029.1;locus_tag=CFSAN001082_RS32165;product=thiazole synthase;protein_id=WP_023254143.1;transl_table=11
NZ_APAH01000155.1	RefSeq	gene	16949	18082	.	+	.	ID=gene-CFSAN001082_RS32170;Name=thiH;gbkey=Gene;gene=thiH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32170;old_locus_tag=CFSAN001082_08259
NZ_APAH01000155.1	Protein Homology	CDS	16949	18082	.	+	0	ID=cds-WP_023254144.1;Parent=gene-CFSAN001082_RS32170;Dbxref=GenBank:WP_023254144.1;Name=WP_023254144.1;Ontology_term=GO:0009228,GO:0005506,GO:0016829,GO:0051539,GO:1904047;gbkey=CDS;gene=thiH;go_function=iron ion binding|0005506||IEA,lyase activity|0016829||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463028.1;locus_tag=CFSAN001082_RS32170;product=2-iminoacetate synthase ThiH;protein_id=WP_023254144.1;transl_table=11
NZ_APAH01000155.1	RefSeq	pseudogene	18304	18742	.	-	.	ID=gene-CFSAN001082_RS32175;Name=CFSAN001082_RS32175;end_range=18742,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS32175;old_locus_tag=CFSAN001082_08264;partial=true;pseudo=true
NZ_APAH01000155.1	Protein Homology	CDS	18304	18742	.	-	1	ID=cds-CFSAN001082_RS32175;Parent=gene-CFSAN001082_RS32175;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=18742,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000400600.1;locus_tag=CFSAN001082_RS32175;partial=true;product=non-LEE encoded effector protein NleB;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000156.1 1 303
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000156.1	RefSeq	region	1	303	.	+	.	ID=NZ_APAH01000156.1:1..303;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000156.1	RefSeq	pseudogene	1	303	.	+	.	ID=gene-CFSAN001082_RS32180;Name=CFSAN001082_RS32180;end_range=303,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS32180;old_locus_tag=CFSAN001082_08271;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000156.1	Protein Homology	CDS	1	303	.	+	0	ID=cds-CFSAN001082_RS32180;Parent=gene-CFSAN001082_RS32180;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=303,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460741.1;locus_tag=CFSAN001082_RS32180;partial=true;product=cytoplasmic protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000157.1 1 1658
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000157.1	RefSeq	region	1	1658	.	+	.	ID=NZ_APAH01000157.1:1..1658;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000157.1	RefSeq	pseudogene	1	682	.	-	.	ID=gene-CFSAN001082_RS32185;Name=siiD;gbkey=Gene;gene=siiD;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS32185;old_locus_tag=CFSAN001082_08276;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000157.1	Protein Homology	CDS	1	682	.	-	0	ID=cds-CFSAN001082_RS32185;Parent=gene-CFSAN001082_RS32185;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=siiD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463125.1;locus_tag=CFSAN001082_RS32185;partial=true;product=SPI-4 type I secretion system protein SiiD;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000157.1	RefSeq	gene	679	1658	.	-	.	ID=gene-CFSAN001082_RS32190;Name=siiC;end_range=1658,.;gbkey=Gene;gene=siiC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32190;old_locus_tag=CFSAN001082_08281;partial=true
NZ_APAH01000157.1	Protein Homology	CDS	679	1658	.	-	2	ID=cds-WP_023254148.1;Parent=gene-CFSAN001082_RS32190;Dbxref=GenBank:WP_023254148.1;Name=WP_023254148.1;end_range=1658,.;gbkey=CDS;gene=siiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463124.1;locus_tag=CFSAN001082_RS32190;partial=true;product=SPI-4 type I secretion system protein SiiC;protein_id=WP_023254148.1;transl_table=11
##sequence-region NZ_APAH01000158.1 1 9488
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000158.1	RefSeq	region	1	9488	.	+	.	ID=NZ_APAH01000158.1:1..9488;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000158.1	RefSeq	gene	1	1170	.	+	.	ID=gene-CFSAN001082_RS32195;Name=cpsG;gbkey=Gene;gene=cpsG;gene_biotype=protein_coding;gene_synonym=manB;locus_tag=CFSAN001082_RS32195;old_locus_tag=CFSAN001082_08286;partial=true;start_range=.,1
NZ_APAH01000158.1	Protein Homology	CDS	1	1170	.	+	0	ID=cds-WP_023254149.1;Parent=gene-CFSAN001082_RS32195;Dbxref=GenBank:WP_023254149.1;Name=WP_023254149.1;gbkey=CDS;gene=cpsG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461049.1;locus_tag=CFSAN001082_RS32195;partial=true;product=colanic acid biosynthesis phosphomannomutase CpsG;protein_id=WP_023254149.1;start_range=.,1;transl_table=11
NZ_APAH01000158.1	RefSeq	gene	1224	2618	.	+	.	ID=gene-CFSAN001082_RS32200;Name=wcaJ;gbkey=Gene;gene=wcaJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32200;old_locus_tag=CFSAN001082_08291
NZ_APAH01000158.1	Protein Homology	CDS	1224	2618	.	+	0	ID=cds-WP_000183163.1;Parent=gene-CFSAN001082_RS32200;Dbxref=GenBank:WP_000183163.1;Name=WP_000183163.1;gbkey=CDS;gene=wcaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461048.1;locus_tag=CFSAN001082_RS32200;product=undecaprenyl-phosphate glucose phosphotransferase;protein_id=WP_000183163.1;transl_table=11
NZ_APAH01000158.1	RefSeq	gene	2720	4198	.	+	.	ID=gene-CFSAN001082_RS32205;Name=wzxC;gbkey=Gene;gene=wzxC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32205;old_locus_tag=CFSAN001082_08296
NZ_APAH01000158.1	Protein Homology	CDS	2720	4198	.	+	0	ID=cds-WP_023254150.1;Parent=gene-CFSAN001082_RS32205;Dbxref=GenBank:WP_023254150.1;Name=WP_023254150.1;gbkey=CDS;gene=wzxC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461047.1;locus_tag=CFSAN001082_RS32205;product=colanic acid undecaprenyl disphosphate flippase WzxC;protein_id=WP_023254150.1;transl_table=11
NZ_APAH01000158.1	RefSeq	gene	4220	5500	.	+	.	ID=gene-CFSAN001082_RS32210;Name=wcaK;gbkey=Gene;gene=wcaK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32210;old_locus_tag=CFSAN001082_08301
NZ_APAH01000158.1	Protein Homology	CDS	4220	5500	.	+	0	ID=cds-WP_023254151.1;Parent=gene-CFSAN001082_RS32210;Dbxref=GenBank:WP_023254151.1;Name=WP_023254151.1;gbkey=CDS;gene=wcaK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461046.1;locus_tag=CFSAN001082_RS32210;product=colanic acid biosynthesis pyruvyl transferase WcaK;protein_id=WP_023254151.1;transl_table=11
NZ_APAH01000158.1	RefSeq	gene	5497	6717	.	+	.	ID=gene-CFSAN001082_RS32215;Name=wcaL;gbkey=Gene;gene=wcaL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32215;old_locus_tag=CFSAN001082_08306
NZ_APAH01000158.1	Protein Homology	CDS	5497	6717	.	+	0	ID=cds-WP_001523510.1;Parent=gene-CFSAN001082_RS32215;Dbxref=GenBank:WP_001523510.1;Name=WP_001523510.1;Ontology_term=GO:0016757;gbkey=CDS;gene=wcaL;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461045.1;locus_tag=CFSAN001082_RS32215;product=colanic acid biosynthesis glycosyltransferase WcaL;protein_id=WP_001523510.1;transl_table=11
NZ_APAH01000158.1	RefSeq	gene	6728	8131	.	+	.	ID=gene-CFSAN001082_RS32220;Name=wcaM;gbkey=Gene;gene=wcaM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32220;old_locus_tag=CFSAN001082_08311
NZ_APAH01000158.1	Protein Homology	CDS	6728	8131	.	+	0	ID=cds-WP_023254152.1;Parent=gene-CFSAN001082_RS32220;Dbxref=GenBank:WP_023254152.1;Name=WP_023254152.1;gbkey=CDS;gene=wcaM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461044.1;locus_tag=CFSAN001082_RS32220;product=colanic acid biosynthesis protein WcaM;protein_id=WP_023254152.1;transl_table=11
NZ_APAH01000158.1	RefSeq	gene	8309	9202	.	+	.	ID=gene-CFSAN001082_RS32225;Name=galF;gbkey=Gene;gene=galF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32225;old_locus_tag=CFSAN001082_08316
NZ_APAH01000158.1	Protein Homology	CDS	8309	9202	.	+	0	ID=cds-WP_000981469.1;Parent=gene-CFSAN001082_RS32225;Dbxref=GenBank:WP_000981469.1;Name=WP_000981469.1;Ontology_term=GO:0006011,GO:0030234;gbkey=CDS;gene=galF;go_function=enzyme regulator activity|0030234||IEA;go_process=UDP-alpha-D-glucose metabolic process|0006011||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461043.1;locus_tag=CFSAN001082_RS32225;product=GalU regulator GalF;protein_id=WP_000981469.1;transl_table=11
##sequence-region NZ_APAH01000159.1 1 14965
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000159.1	RefSeq	region	1	14965	.	+	.	ID=NZ_APAH01000159.1:1..14965;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000159.1	RefSeq	gene	65	1231	.	+	.	ID=gene-CFSAN001082_RS32230;Name=ugd;gbkey=Gene;gene=ugd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32230;old_locus_tag=CFSAN001082_08321
NZ_APAH01000159.1	Protein Homology	CDS	65	1231	.	+	0	ID=cds-WP_000704833.1;Parent=gene-CFSAN001082_RS32230;Dbxref=GenBank:WP_000704833.1;Name=WP_000704833.1;Ontology_term=GO:0000271,GO:0003979;gbkey=CDS;gene=ugd;go_function=UDP-glucose 6-dehydrogenase activity|0003979||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461025.1;locus_tag=CFSAN001082_RS32230;product=UDP-glucose 6-dehydrogenase;protein_id=WP_000704833.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	1374	2357	.	+	.	ID=gene-CFSAN001082_RS32235;Name=wzzB;gbkey=Gene;gene=wzzB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32235;old_locus_tag=CFSAN001082_08326
NZ_APAH01000159.1	Protein Homology	CDS	1374	2357	.	+	0	ID=cds-WP_023254153.1;Parent=gene-CFSAN001082_RS32235;Dbxref=GenBank:WP_023254153.1;Name=WP_023254153.1;Ontology_term=GO:0009103;gbkey=CDS;gene=wzzB;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461024.1;locus_tag=CFSAN001082_RS32235;product=LPS O-antigen chain length determinant protein WzzB;protein_id=WP_023254153.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	2452	3063	.	-	.	ID=gene-CFSAN001082_RS32240;Name=hisIE;gbkey=Gene;gene=hisIE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32240;old_locus_tag=CFSAN001082_08331
NZ_APAH01000159.1	Protein Homology	CDS	2452	3063	.	-	0	ID=cds-WP_000954846.1;Parent=gene-CFSAN001082_RS32240;Dbxref=GenBank:WP_000954846.1;Name=WP_000954846.1;Ontology_term=GO:0000105,GO:0004635,GO:0004636;gbkey=CDS;gene=hisIE;go_function=phosphoribosyl-AMP cyclohydrolase activity|0004635||IEA,phosphoribosyl-ATP diphosphatase activity|0004636||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461023.1;locus_tag=CFSAN001082_RS32240;product=bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE;protein_id=WP_000954846.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	3057	3833	.	-	.	ID=gene-CFSAN001082_RS32245;Name=hisF;gbkey=Gene;gene=hisF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32245;old_locus_tag=CFSAN001082_08336
NZ_APAH01000159.1	Protein Homology	CDS	3057	3833	.	-	0	ID=cds-WP_000880125.1;Parent=gene-CFSAN001082_RS32245;Dbxref=GenBank:WP_000880125.1;Name=WP_000880125.1;Ontology_term=GO:0000105,GO:0000107;gbkey=CDS;gene=hisF;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461022.1;locus_tag=CFSAN001082_RS32245;product=imidazole glycerol phosphate synthase subunit HisF;protein_id=WP_000880125.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	3815	4552	.	-	.	ID=gene-CFSAN001082_RS32250;Name=hisA;gbkey=Gene;gene=hisA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32250;old_locus_tag=CFSAN001082_08341
NZ_APAH01000159.1	Protein Homology	CDS	3815	4552	.	-	0	ID=cds-WP_000586406.1;Parent=gene-CFSAN001082_RS32250;Dbxref=GenBank:WP_000586406.1;Name=WP_000586406.1;Ontology_term=GO:0000105,GO:0003949;gbkey=CDS;gene=hisA;go_function=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity|0003949||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461021.1;locus_tag=CFSAN001082_RS32250;product=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase;protein_id=WP_000586406.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	4552	5142	.	-	.	ID=gene-CFSAN001082_RS32255;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32255;old_locus_tag=CFSAN001082_08346
NZ_APAH01000159.1	Protein Homology	CDS	4552	5142	.	-	0	ID=cds-WP_023254154.1;Parent=gene-CFSAN001082_RS32255;Dbxref=GenBank:WP_023254154.1;Name=WP_023254154.1;Ontology_term=GO:0000105,GO:0000107;gbkey=CDS;gene=hisH;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128083.1;locus_tag=CFSAN001082_RS32255;product=imidazole glycerol phosphate synthase subunit HisH;protein_id=WP_023254154.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	5142	6209	.	-	.	ID=gene-CFSAN001082_RS32260;Name=hisB;gbkey=Gene;gene=hisB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32260;old_locus_tag=CFSAN001082_08351
NZ_APAH01000159.1	Protein Homology	CDS	5142	6209	.	-	0	ID=cds-WP_000080050.1;Parent=gene-CFSAN001082_RS32260;Dbxref=GenBank:WP_000080050.1;Name=WP_000080050.1;Ontology_term=GO:0000105,GO:0004401,GO:0004424;gbkey=CDS;gene=hisB;go_function=histidinol-phosphatase activity|0004401||IEA,imidazoleglycerol-phosphate dehydratase activity|0004424||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461019.1;locus_tag=CFSAN001082_RS32260;product=bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB;protein_id=WP_000080050.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	6206	7285	.	-	.	ID=gene-CFSAN001082_RS32265;Name=hisC;gbkey=Gene;gene=hisC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32265;old_locus_tag=CFSAN001082_08356
NZ_APAH01000159.1	Protein Homology	CDS	6206	7285	.	-	0	ID=cds-WP_023254155.1;Parent=gene-CFSAN001082_RS32265;Dbxref=GenBank:WP_023254155.1;Name=WP_023254155.1;Ontology_term=GO:0000105,GO:0004400;gbkey=CDS;gene=hisC;go_function=histidinol-phosphate transaminase activity|0004400||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461018.1;locus_tag=CFSAN001082_RS32265;product=histidinol-phosphate transaminase;protein_id=WP_023254155.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	7282	8586	.	-	.	ID=gene-CFSAN001082_RS32270;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32270;old_locus_tag=CFSAN001082_08361
NZ_APAH01000159.1	Protein Homology	CDS	7282	8586	.	-	0	ID=cds-WP_000009613.1;Parent=gene-CFSAN001082_RS32270;Dbxref=GenBank:WP_000009613.1;Name=WP_000009613.1;Ontology_term=GO:0000105,GO:0004399,GO:0046872,GO:0051287;gbkey=CDS;gene=hisD;go_function=histidinol dehydrogenase activity|0004399||IEA,metal ion binding|0046872||IEA,NAD binding|0051287||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461017.1;locus_tag=CFSAN001082_RS32270;product=histidinol dehydrogenase;protein_id=WP_000009613.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	8689	9588	.	-	.	ID=gene-CFSAN001082_RS32275;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32275;old_locus_tag=CFSAN001082_08366
NZ_APAH01000159.1	Protein Homology	CDS	8689	9588	.	-	0	ID=cds-WP_000886600.1;Parent=gene-CFSAN001082_RS32275;Dbxref=GenBank:WP_000886600.1;Name=WP_000886600.1;Ontology_term=GO:0000105,GO:0003879,GO:0005737;gbkey=CDS;gene=hisG;go_component=cytoplasm|0005737||IEA;go_function=ATP phosphoribosyltransferase activity|0003879||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128078.1;locus_tag=CFSAN001082_RS32275;product=ATP phosphoribosyltransferase;protein_id=WP_000886600.1;transl_table=11
NZ_APAH01000159.1	cmsearch	sequence_feature	9635	9758	.	-	.	ID=id-NZ_APAH01000159.1:9635..9758;Dbxref=RFAM:RF00514;Note=His leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_APAH01000159.1	RefSeq	gene	9734	9784	.	-	.	ID=gene-CFSAN001082_RS48210;Name=hisL;gbkey=Gene;gene=hisL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48210
NZ_APAH01000159.1	Protein Homology	CDS	9734	9784	.	-	0	ID=cds-WP_001364200.1;Parent=gene-CFSAN001082_RS48210;Dbxref=GenBank:WP_001364200.1;Name=WP_001364200.1;Ontology_term=GO:0000105;gbkey=CDS;gene=hisL;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416522.1;locus_tag=CFSAN001082_RS48210;product=his operon leader peptide;protein_id=WP_001364200.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	9947	10771	.	+	.	ID=gene-CFSAN001082_RS32280;Name=CFSAN001082_RS32280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32280;old_locus_tag=CFSAN001082_08371
NZ_APAH01000159.1	Protein Homology	CDS	9947	10771	.	+	0	ID=cds-WP_000754712.1;Parent=gene-CFSAN001082_RS32280;Dbxref=GenBank:WP_000754712.1;Name=WP_000754712.1;Ontology_term=GO:0016491,GO:0051287;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461015.1;locus_tag=CFSAN001082_RS32280;product=SDR family oxidoreductase;protein_id=WP_000754712.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	10817	11731	.	+	.	ID=gene-CFSAN001082_RS32285;Name=CFSAN001082_RS32285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32285;old_locus_tag=CFSAN001082_08376
NZ_APAH01000159.1	Protein Homology	CDS	10817	11731	.	+	0	ID=cds-WP_000803316.1;Parent=gene-CFSAN001082_RS32285;Dbxref=GenBank:WP_000803316.1;Name=WP_000803316.1;Ontology_term=GO:0001216,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription activator activity|0001216||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461014.1;locus_tag=CFSAN001082_RS32285;product=LysR family transcriptional regulator;protein_id=WP_000803316.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	11965	12027	.	+	.	ID=gene-CFSAN001082_RS48215;Name=yoeI;gbkey=Gene;gene=yoeI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48215
NZ_APAH01000159.1	Protein Homology	CDS	11965	12027	.	+	0	ID=cds-WP_096335044.1;Parent=gene-CFSAN001082_RS48215;Dbxref=GenBank:WP_096335044.1;Name=WP_096335044.1;gbkey=CDS;gene=yoeI;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791246.1;locus_tag=CFSAN001082_RS48215;product=membrane protein YoeI;protein_id=WP_096335044.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	12017	13375	.	+	.	ID=gene-CFSAN001082_RS32290;Name=plaP;gbkey=Gene;gene=plaP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32290;old_locus_tag=CFSAN001082_08381
NZ_APAH01000159.1	Protein Homology	CDS	12017	13375	.	+	0	ID=cds-WP_001519005.1;Parent=gene-CFSAN001082_RS32290;Dbxref=GenBank:WP_001519005.1;Name=WP_001519005.1;gbkey=CDS;gene=plaP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416518.2;locus_tag=CFSAN001082_RS32290;product=putrescine/proton symporter PlaP;protein_id=WP_001519005.1;transl_table=11
NZ_APAH01000159.1	RefSeq	gene	13511	14941	.	-	.	ID=gene-CFSAN001082_RS32295;Name=sbcB;gbkey=Gene;gene=sbcB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32295;old_locus_tag=CFSAN001082_08386
NZ_APAH01000159.1	Protein Homology	CDS	13511	14941	.	-	0	ID=cds-WP_000216702.1;Parent=gene-CFSAN001082_RS32295;Dbxref=GenBank:WP_000216702.1;Name=WP_000216702.1;Ontology_term=GO:0006281,GO:0000175,GO:0003676,GO:0008310;gbkey=CDS;gene=sbcB;go_function=3'-5'-RNA exonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA,single-stranded DNA 3'-5' DNA exonuclease activity|0008310||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461012.1;locus_tag=CFSAN001082_RS32295;product=exodeoxyribonuclease I;protein_id=WP_000216702.1;transl_table=11
##sequence-region NZ_APAH01000160.1 1 1318
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000160.1	RefSeq	region	1	1318	.	+	.	ID=NZ_APAH01000160.1:1..1318;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000160.1	RefSeq	pseudogene	555	950	.	-	.	ID=gene-CFSAN001082_RS32305;Name=CFSAN001082_RS32305;end_range=950,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS32305;old_locus_tag=CFSAN001082_08396;partial=true;pseudo=true
NZ_APAH01000160.1	Protein Homology	CDS	555	950	.	-	0	ID=cds-CFSAN001082_RS32305;Parent=gene-CFSAN001082_RS32305;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0009166,GO:0016787;end_range=950,.;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;go_process=nucleotide catabolic process|0009166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015633260.1;locus_tag=CFSAN001082_RS32305;partial=true;product=5'-nucleotidase C-terminal domain-containing protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000161.1 1 9811
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000161.1	RefSeq	region	1	9811	.	+	.	ID=NZ_APAH01000161.1:1..9811;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000161.1	RefSeq	gene	79	2271	.	+	.	ID=gene-CFSAN001082_RS32310;Name=sinH;gbkey=Gene;gene=sinH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32310;old_locus_tag=CFSAN001082_08401
NZ_APAH01000161.1	Protein Homology	CDS	79	2271	.	+	0	ID=cds-WP_023254159.1;Parent=gene-CFSAN001082_RS32310;Dbxref=GenBank:WP_023254159.1;Name=WP_023254159.1;gbkey=CDS;gene=sinH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461452.1;locus_tag=CFSAN001082_RS32310;product=intimin-like inverse autotransporter SinH;protein_id=WP_023254159.1;transl_table=11
NZ_APAH01000161.1	RefSeq	gene	2329	3291	.	+	.	ID=gene-CFSAN001082_RS32315;Name=CFSAN001082_RS32315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32315;old_locus_tag=CFSAN001082_08406
NZ_APAH01000161.1	Protein Homology	CDS	2329	3291	.	+	0	ID=cds-WP_023254160.1;Parent=gene-CFSAN001082_RS32315;Dbxref=GenBank:WP_023254160.1;Name=WP_023254160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461451.1;locus_tag=CFSAN001082_RS32315;product=SinI family autotransporter-associated protein;protein_id=WP_023254160.1;transl_table=11
NZ_APAH01000161.1	RefSeq	gene	3411	9017	.	+	.	ID=gene-CFSAN001082_RS32320;Name=ratA;gbkey=Gene;gene=ratA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32320;old_locus_tag=CFSAN001082_08411
NZ_APAH01000161.1	Protein Homology	CDS	3411	9017	.	+	0	ID=cds-WP_071787087.1;Parent=gene-CFSAN001082_RS32320;Dbxref=GenBank:WP_071787087.1;Name=WP_071787087.1;gbkey=CDS;gene=ratA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461450.1;locus_tag=CFSAN001082_RS32320;product=DUF823/DUF824 repeat adhesin RatA;protein_id=WP_071787087.1;transl_table=11
NZ_APAH01000161.1	RefSeq	pseudogene	9176	9394	.	+	.	ID=gene-CFSAN001082_RS49195;Name=CFSAN001082_RS49195;end_range=9394,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49195;partial=true;pseudo=true
NZ_APAH01000161.1	Protein Homology	CDS	9176	9394	.	+	0	ID=cds-CFSAN001082_RS49195;Parent=gene-CFSAN001082_RS49195;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=9394,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461449.1;locus_tag=CFSAN001082_RS49195;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000162.1 1 10888
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000162.1	RefSeq	region	1	10888	.	+	.	ID=NZ_APAH01000162.1:1..10888;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000162.1	RefSeq	gene	11	421	.	+	.	ID=gene-CFSAN001082_RS32325;Name=CFSAN001082_RS32325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32325;old_locus_tag=CFSAN001082_08416
NZ_APAH01000162.1	Protein Homology	CDS	11	421	.	+	0	ID=cds-WP_000936441.1;Parent=gene-CFSAN001082_RS32325;Dbxref=GenBank:WP_000936441.1;Name=WP_000936441.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462070.1;locus_tag=CFSAN001082_RS32325;product=hypothetical protein;protein_id=WP_000936441.1;transl_table=11
NZ_APAH01000162.1	RefSeq	gene	408	812	.	+	.	ID=gene-CFSAN001082_RS32330;Name=CFSAN001082_RS32330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32330;old_locus_tag=CFSAN001082_08421
NZ_APAH01000162.1	Protein Homology	CDS	408	812	.	+	0	ID=cds-WP_000665656.1;Parent=gene-CFSAN001082_RS32330;Dbxref=GenBank:WP_000665656.1;Name=WP_000665656.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462071.1;locus_tag=CFSAN001082_RS32330;product=hypothetical protein;protein_id=WP_000665656.1;transl_table=11
NZ_APAH01000162.1	RefSeq	gene	936	1820	.	+	.	ID=gene-CFSAN001082_RS32335;Name=CFSAN001082_RS32335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32335;old_locus_tag=CFSAN001082_08426
NZ_APAH01000162.1	Protein Homology	CDS	936	1820	.	+	0	ID=cds-WP_000019032.1;Parent=gene-CFSAN001082_RS32335;Dbxref=GenBank:WP_000019032.1;Name=WP_000019032.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462072.1;locus_tag=CFSAN001082_RS32335;product=SDR family oxidoreductase;protein_id=WP_000019032.1;transl_table=11
NZ_APAH01000162.1	RefSeq	gene	1933	2358	.	-	.	ID=gene-CFSAN001082_RS32340;Name=exbD;gbkey=Gene;gene=exbD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32340;old_locus_tag=CFSAN001082_08431
NZ_APAH01000162.1	Protein Homology	CDS	1933	2358	.	-	0	ID=cds-WP_001251476.1;Parent=gene-CFSAN001082_RS32340;Dbxref=GenBank:WP_001251476.1;Name=WP_001251476.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=exbD;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462073.1;locus_tag=CFSAN001082_RS32340;product=TonB system transport protein ExbD;protein_id=WP_001251476.1;transl_table=11
NZ_APAH01000162.1	RefSeq	gene	2365	3099	.	-	.	ID=gene-CFSAN001082_RS32345;Name=exbB;gbkey=Gene;gene=exbB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32345;old_locus_tag=CFSAN001082_08436
NZ_APAH01000162.1	Protein Homology	CDS	2365	3099	.	-	0	ID=cds-WP_000527859.1;Parent=gene-CFSAN001082_RS32345;Dbxref=GenBank:WP_000527859.1;Name=WP_000527859.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=exbB;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462074.1;locus_tag=CFSAN001082_RS32345;product=tol-pal system-associated acyl-CoA thioesterase;protein_id=WP_000527859.1;transl_table=11
NZ_APAH01000162.1	RefSeq	gene	3351	4538	.	+	.	ID=gene-CFSAN001082_RS32355;Name=metC;gbkey=Gene;gene=metC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32355;old_locus_tag=CFSAN001082_08446
NZ_APAH01000162.1	Protein Homology	CDS	3351	4538	.	+	0	ID=cds-WP_020899254.1;Parent=gene-CFSAN001082_RS32355;Dbxref=GenBank:WP_020899254.1;Name=WP_020899254.1;Ontology_term=GO:0006520,GO:0019346,GO:0030170,GO:0047804;gbkey=CDS;gene=metC;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine-S-conjugate beta-lyase activity|0047804||IEA;go_process=amino acid metabolic process|0006520||IEA,transsulfuration|0019346||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462076.1;locus_tag=CFSAN001082_RS32355;product=cystathionine beta-lyase;protein_id=WP_020899254.1;transl_table=11
NZ_APAH01000162.1	RefSeq	gene	4678	5337	.	+	.	ID=gene-CFSAN001082_RS32360;Name=yghB;gbkey=Gene;gene=yghB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32360;old_locus_tag=CFSAN001082_08451
NZ_APAH01000162.1	Protein Homology	CDS	4678	5337	.	+	0	ID=cds-WP_000268444.1;Parent=gene-CFSAN001082_RS32360;Dbxref=GenBank:WP_000268444.1;Name=WP_000268444.1;gbkey=CDS;gene=yghB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462077.1;locus_tag=CFSAN001082_RS32360;product=DedA family general envelope maintenance protein YghB;protein_id=WP_000268444.1;transl_table=11
NZ_APAH01000162.1	RefSeq	gene	5401	6300	.	-	.	ID=gene-CFSAN001082_RS32365;Name=CFSAN001082_RS32365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32365;old_locus_tag=CFSAN001082_08456
NZ_APAH01000162.1	Protein Homology	CDS	5401	6300	.	-	0	ID=cds-WP_001078198.1;Parent=gene-CFSAN001082_RS32365;Dbxref=GenBank:WP_001078198.1;Name=WP_001078198.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001407451.1;locus_tag=CFSAN001082_RS32365;product=AraC family transcriptional regulator;protein_id=WP_001078198.1;transl_table=11
NZ_APAH01000162.1	RefSeq	gene	6493	7656	.	+	.	ID=gene-CFSAN001082_RS32370;Name=yqhD;gbkey=Gene;gene=yqhD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32370;old_locus_tag=CFSAN001082_08461
NZ_APAH01000162.1	Protein Homology	CDS	6493	7656	.	+	0	ID=cds-WP_023254163.1;Parent=gene-CFSAN001082_RS32370;Dbxref=GenBank:WP_023254163.1;Name=WP_023254163.1;Ontology_term=GO:0046872,GO:1990362;gbkey=CDS;gene=yqhD;go_function=metal ion binding|0046872||IEA,butanol dehydrogenase (NAD+) activity|1990362||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462079.1;locus_tag=CFSAN001082_RS32370;product=alcohol dehydrogenase;protein_id=WP_023254163.1;transl_table=11
NZ_APAH01000162.1	RefSeq	gene	7762	8589	.	+	.	ID=gene-CFSAN001082_RS32375;Name=dkgA;gbkey=Gene;gene=dkgA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32375;old_locus_tag=CFSAN001082_08466
NZ_APAH01000162.1	Protein Homology	CDS	7762	8589	.	+	0	ID=cds-WP_000013100.1;Parent=gene-CFSAN001082_RS32375;Dbxref=GenBank:WP_000013100.1;Name=WP_000013100.1;Ontology_term=GO:0050580;gbkey=CDS;gene=dkgA;go_function=2%2C5-didehydrogluconate reductase activity|0050580||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462080.1;locus_tag=CFSAN001082_RS32375;product=2%2C5-didehydrogluconate reductase DkgA;protein_id=WP_000013100.1;transl_table=11
NZ_APAH01000162.1	RefSeq	pseudogene	8755	10240	.	+	.	ID=gene-CFSAN001082_RS32380;Name=CFSAN001082_RS32380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS32380;old_locus_tag=CFSAN001082_08471;pseudo=true
NZ_APAH01000162.1	Protein Homology	CDS	8755	10240	.	+	0	ID=cds-CFSAN001082_RS32380;Parent=gene-CFSAN001082_RS32380;Note=frameshifted;Ontology_term=GO:0006820,GO:0008509,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=monoatomic anion transmembrane transporter activity|0008509||IEA;go_process=monoatomic anion transport|0006820||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462081.3;locus_tag=CFSAN001082_RS32380;product=DASS family sodium-coupled anion symporter;pseudo=true;transl_table=11
NZ_APAH01000162.1	RefSeq	gene	10285	10740	.	+	.	ID=gene-CFSAN001082_RS32385;Name=CFSAN001082_RS32385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32385;old_locus_tag=CFSAN001082_08476
NZ_APAH01000162.1	Protein Homology	CDS	10285	10740	.	+	0	ID=cds-WP_000128242.1;Parent=gene-CFSAN001082_RS32385;Dbxref=GenBank:WP_000128242.1;Name=WP_000128242.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462082.1;locus_tag=CFSAN001082_RS32385;product=HIT family protein;protein_id=WP_000128242.1;transl_table=11
##sequence-region NZ_APAH01000163.1 1 346
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000163.1	RefSeq	region	1	346	.	+	.	ID=NZ_APAH01000163.1:1..346;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000163.1	RefSeq	pseudogene	62	346	.	+	.	ID=gene-CFSAN001082_RS32390;Name=CFSAN001082_RS32390;end_range=346,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS32390;old_locus_tag=CFSAN001082_08481;partial=true;pseudo=true
NZ_APAH01000163.1	Protein Homology	CDS	62	346	.	+	0	ID=cds-CFSAN001082_RS32390;Parent=gene-CFSAN001082_RS32390;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=346,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006493254.1;locus_tag=CFSAN001082_RS32390;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000164.1 1 459
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000164.1	RefSeq	region	1	459	.	+	.	ID=NZ_APAH01000164.1:1..459;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000165.1 1 295
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000165.1	RefSeq	region	1	295	.	+	.	ID=NZ_APAH01000165.1:1..295;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000165.1	RefSeq	gene	24	218	.	-	.	ID=gene-CFSAN001082_RS32395;Name=CFSAN001082_RS32395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32395;old_locus_tag=CFSAN001082_08486
NZ_APAH01000165.1	GeneMarkS-2+	CDS	24	218	.	-	0	ID=cds-WP_000525382.1;Parent=gene-CFSAN001082_RS32395;Dbxref=GenBank:WP_000525382.1;Name=WP_000525382.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS32395;product=hypothetical protein;protein_id=WP_000525382.1;transl_table=11
##sequence-region NZ_APAH01000166.1 1 34969
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000166.1	RefSeq	region	1	34969	.	+	.	ID=NZ_APAH01000166.1:1..34969;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000166.1	RefSeq	gene	151	393	.	+	.	ID=gene-CFSAN001082_RS32400;Name=yjbE;gbkey=Gene;gene=yjbE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32400;old_locus_tag=CFSAN001082_08491
NZ_APAH01000166.1	Protein Homology	CDS	151	393	.	+	0	ID=cds-WP_001541297.1;Parent=gene-CFSAN001082_RS32400;Dbxref=GenBank:WP_001541297.1;Name=WP_001541297.1;gbkey=CDS;gene=yjbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313036.1;locus_tag=CFSAN001082_RS32400;product=exopolysaccharide production protein YjbE;protein_id=WP_001541297.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	457	1095	.	+	.	ID=gene-CFSAN001082_RS32405;Name=CFSAN001082_RS32405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32405;old_locus_tag=CFSAN001082_08496
NZ_APAH01000166.1	Protein Homology	CDS	457	1095	.	+	0	ID=cds-WP_023254165.1;Parent=gene-CFSAN001082_RS32405;Dbxref=GenBank:WP_023254165.1;Name=WP_023254165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000824802.1;locus_tag=CFSAN001082_RS32405;product=YjbF family lipoprotein;protein_id=WP_023254165.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	1092	1829	.	+	.	ID=gene-CFSAN001082_RS32410;Name=CFSAN001082_RS32410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32410;old_locus_tag=CFSAN001082_08501
NZ_APAH01000166.1	Protein Homology	CDS	1092	1829	.	+	0	ID=cds-WP_023254166.1;Parent=gene-CFSAN001082_RS32410;Dbxref=GenBank:WP_023254166.1;Name=WP_023254166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463089.1;locus_tag=CFSAN001082_RS32410;product=capsule biosynthesis GfcC family protein;protein_id=WP_023254166.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	1829	3925	.	+	.	ID=gene-CFSAN001082_RS32415;Name=CFSAN001082_RS32415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32415;old_locus_tag=CFSAN001082_08506
NZ_APAH01000166.1	Protein Homology	CDS	1829	3925	.	+	0	ID=cds-WP_023254167.1;Parent=gene-CFSAN001082_RS32415;Dbxref=GenBank:WP_023254167.1;Name=WP_023254167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463090.1;locus_tag=CFSAN001082_RS32415;product=YjbH domain-containing protein;protein_id=WP_023254167.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	4068	4478	.	+	.	ID=gene-CFSAN001082_RS32420;Name=psiE;gbkey=Gene;gene=psiE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32420;old_locus_tag=CFSAN001082_08511
NZ_APAH01000166.1	Protein Homology	CDS	4068	4478	.	+	0	ID=cds-WP_000982752.1;Parent=gene-CFSAN001082_RS32420;Dbxref=GenBank:WP_000982752.1;Name=WP_000982752.1;gbkey=CDS;gene=psiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463091.1;locus_tag=CFSAN001082_RS32420;product=phosphate-starvation-inducible protein PsiE;protein_id=WP_000982752.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	4644	5534	.	-	.	ID=gene-CFSAN001082_RS32425;Name=malG;gbkey=Gene;gene=malG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32425;old_locus_tag=CFSAN001082_08516
NZ_APAH01000166.1	Protein Homology	CDS	4644	5534	.	-	0	ID=cds-WP_001252081.1;Parent=gene-CFSAN001082_RS32425;Dbxref=GenBank:WP_001252081.1;Name=WP_001252081.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=malG;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463092.1;locus_tag=CFSAN001082_RS32425;product=maltose ABC transporter permease MalG;protein_id=WP_001252081.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	5549	7093	.	-	.	ID=gene-CFSAN001082_RS32430;Name=malF;gbkey=Gene;gene=malF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32430;old_locus_tag=CFSAN001082_08521
NZ_APAH01000166.1	Protein Homology	CDS	5549	7093	.	-	0	ID=cds-WP_000382575.1;Parent=gene-CFSAN001082_RS32430;Dbxref=GenBank:WP_000382575.1;Name=WP_000382575.1;Ontology_term=GO:0055085,GO:0043190;gbkey=CDS;gene=malF;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463093.1;locus_tag=CFSAN001082_RS32430;product=maltose ABC transporter permease MalF;protein_id=WP_000382575.1;transl_table=11
NZ_APAH01000166.1	RefSeq	pseudogene	7136	7276	.	+	.	ID=gene-CFSAN001082_RS49200;Name=CFSAN001082_RS49200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49200;partial=true;pseudo=true;start_range=.,7136
NZ_APAH01000166.1	Protein Homology	CDS	7136	7276	.	+	0	ID=cds-CFSAN001082_RS49200;Parent=gene-CFSAN001082_RS49200;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=CFSAN001082_RS49200;partial=true;product=hypothetical protein;pseudo=true;start_range=.,7136;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	7225	8415	.	-	.	ID=gene-CFSAN001082_RS32435;Name=malE;gbkey=Gene;gene=malE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32435;old_locus_tag=CFSAN001082_08526
NZ_APAH01000166.1	Protein Homology	CDS	7225	8415	.	-	0	ID=cds-WP_023254168.1;Parent=gene-CFSAN001082_RS32435;Dbxref=GenBank:WP_023254168.1;Name=WP_023254168.1;Ontology_term=GO:0008643,GO:0055085,GO:0015144;gbkey=CDS;gene=malE;go_function=carbohydrate transmembrane transporter activity|0015144||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000695396.1;locus_tag=CFSAN001082_RS32435;product=maltose/maltodextrin ABC transporter substrate-binding protein MalE;protein_id=WP_023254168.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	8777	9886	.	+	.	ID=gene-CFSAN001082_RS32440;Name=malK;gbkey=Gene;gene=malK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32440;old_locus_tag=CFSAN001082_08531
NZ_APAH01000166.1	Protein Homology	CDS	8777	9886	.	+	0	ID=cds-WP_000179176.1;Parent=gene-CFSAN001082_RS32440;Dbxref=GenBank:WP_000179176.1;Name=WP_000179176.1;Ontology_term=GO:0008643,GO:0055085,GO:0005524,GO:0140359,GO:0043190;gbkey=CDS;gene=malK;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011915502.1;locus_tag=CFSAN001082_RS32440;product=maltose/maltodextrin ABC transporter ATP-binding protein MalK;protein_id=WP_000179176.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	9975	11333	.	+	.	ID=gene-CFSAN001082_RS32445;Name=CFSAN001082_RS32445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32445;old_locus_tag=CFSAN001082_08536
NZ_APAH01000166.1	Protein Homology	CDS	9975	11333	.	+	0	ID=cds-WP_000973642.1;Parent=gene-CFSAN001082_RS32445;Dbxref=GenBank:WP_000973642.1;Name=WP_000973642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463096.1;locus_tag=CFSAN001082_RS32445;product=maltoporin;protein_id=WP_000973642.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	11497	12414	.	+	.	ID=gene-CFSAN001082_RS32450;Name=malM;gbkey=Gene;gene=malM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32450;old_locus_tag=CFSAN001082_08541
NZ_APAH01000166.1	Protein Homology	CDS	11497	12414	.	+	0	ID=cds-WP_023254169.1;Parent=gene-CFSAN001082_RS32450;Dbxref=GenBank:WP_023254169.1;Name=WP_023254169.1;Ontology_term=GO:0008643,GO:0042597;gbkey=CDS;gene=malM;go_component=periplasmic space|0042597||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463097.1;locus_tag=CFSAN001082_RS32450;product=maltose operon protein MalM;protein_id=WP_023254169.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	12595	13092	.	+	.	ID=gene-CFSAN001082_RS32455;Name=ubiC;gbkey=Gene;gene=ubiC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32455;old_locus_tag=CFSAN001082_08551
NZ_APAH01000166.1	Protein Homology	CDS	12595	13092	.	+	0	ID=cds-WP_000019217.1;Parent=gene-CFSAN001082_RS32455;Dbxref=GenBank:WP_000019217.1;Name=WP_000019217.1;Ontology_term=GO:0008813;gbkey=CDS;gene=ubiC;go_function=chorismate lyase activity|0008813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463098.1;locus_tag=CFSAN001082_RS32455;product=chorismate lyase;protein_id=WP_000019217.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	13106	13978	.	+	.	ID=gene-CFSAN001082_RS32460;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32460;old_locus_tag=CFSAN001082_08556
NZ_APAH01000166.1	Protein Homology	CDS	13106	13978	.	+	0	ID=cds-WP_000455249.1;Parent=gene-CFSAN001082_RS32460;Dbxref=GenBank:WP_000455249.1;Name=WP_000455249.1;Ontology_term=GO:0006744,GO:0008412;gbkey=CDS;gene=ubiA;go_function=4-hydroxybenzoate polyprenyltransferase activity|0008412||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463099.1;locus_tag=CFSAN001082_RS32460;product=4-hydroxybenzoate octaprenyltransferase;protein_id=WP_000455249.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	14077	16497	.	-	.	ID=gene-CFSAN001082_RS32465;Name=plsB;gbkey=Gene;gene=plsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32465;old_locus_tag=CFSAN001082_08561
NZ_APAH01000166.1	Protein Homology	CDS	14077	16497	.	-	0	ID=cds-WP_000017360.1;Parent=gene-CFSAN001082_RS32465;Dbxref=GenBank:WP_000017360.1;Name=WP_000017360.1;Ontology_term=GO:0008654,GO:0004366;gbkey=CDS;gene=plsB;go_function=glycerol-3-phosphate O-acyltransferase activity|0004366||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463100.1;locus_tag=CFSAN001082_RS32465;product=glycerol-3-phosphate 1-O-acyltransferase PlsB;protein_id=WP_000017360.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	16668	17036	.	+	.	ID=gene-CFSAN001082_RS32470;Name=CFSAN001082_RS32470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32470;old_locus_tag=CFSAN001082_08566
NZ_APAH01000166.1	Protein Homology	CDS	16668	17036	.	+	0	ID=cds-WP_000002900.1;Parent=gene-CFSAN001082_RS32470;Dbxref=GenBank:WP_000002900.1;Name=WP_000002900.1;Ontology_term=GO:0006654,GO:0008654,GO:0016310,GO:0004143,GO:0005524,GO:0046872;gbkey=CDS;go_function=ATP-dependent diacylglycerol kinase activity|0004143||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=phosphatidic acid biosynthetic process|0006654||IEA,phospholipid biosynthetic process|0008654||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463101.1;locus_tag=CFSAN001082_RS32470;product=diacylglycerol kinase;protein_id=WP_000002900.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	17145	17753	.	+	.	ID=gene-CFSAN001082_RS32475;Name=lexA;gbkey=Gene;gene=lexA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32475;old_locus_tag=CFSAN001082_08571
NZ_APAH01000166.1	Protein Homology	CDS	17145	17753	.	+	0	ID=cds-WP_000646079.1;Parent=gene-CFSAN001082_RS32475;Dbxref=GenBank:WP_000646079.1;Name=WP_000646079.1;Ontology_term=GO:0009432,GO:0045892,GO:0004252;gbkey=CDS;gene=lexA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=SOS response|0009432||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000646075.1;locus_tag=CFSAN001082_RS32475;product=transcriptional repressor LexA;protein_id=WP_000646079.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	17932	19257	.	+	.	ID=gene-CFSAN001082_RS32480;Name=dinF;gbkey=Gene;gene=dinF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32480;old_locus_tag=CFSAN001082_08576
NZ_APAH01000166.1	Protein Homology	CDS	17932	19257	.	+	0	ID=cds-WP_001128113.1;Parent=gene-CFSAN001082_RS32480;Dbxref=GenBank:WP_001128113.1;Name=WP_001128113.1;Ontology_term=GO:0055085,GO:0015297,GO:0042910,GO:0016020;gbkey=CDS;gene=dinF;go_component=membrane|0016020||IEA;go_function=antiporter activity|0015297||IEA,xenobiotic transmembrane transporter activity|0042910||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463103.1;locus_tag=CFSAN001082_RS32480;product=MATE family efflux transporter DinF;protein_id=WP_001128113.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	19254	19367	.	+	.	ID=gene-CFSAN001082_RS32485;Name=CFSAN001082_RS32485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32485;old_locus_tag=CFSAN001082_08581
NZ_APAH01000166.1	Protein Homology	CDS	19254	19367	.	+	0	ID=cds-WP_010989093.1;Parent=gene-CFSAN001082_RS32485;Dbxref=GenBank:WP_010989093.1;Name=WP_010989093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463104.1;locus_tag=CFSAN001082_RS32485;product=hypothetical protein;protein_id=WP_010989093.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	19389	19598	.	+	.	ID=gene-CFSAN001082_RS32490;Name=CFSAN001082_RS32490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32490;old_locus_tag=CFSAN001082_08586
NZ_APAH01000166.1	Protein Homology	CDS	19389	19598	.	+	0	ID=cds-WP_001030592.1;Parent=gene-CFSAN001082_RS32490;Dbxref=GenBank:WP_001030592.1;Name=WP_001030592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313055.1;locus_tag=CFSAN001082_RS32490;product=CsbD family protein;protein_id=WP_001030592.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	19697	20212	.	-	.	ID=gene-CFSAN001082_RS32495;Name=zur;gbkey=Gene;gene=zur;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32495;old_locus_tag=CFSAN001082_08591
NZ_APAH01000166.1	Protein Homology	CDS	19697	20212	.	-	0	ID=cds-WP_017441254.1;Parent=gene-CFSAN001082_RS32495;Dbxref=GenBank:WP_017441254.1;Name=WP_017441254.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=zur;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463106.1;locus_tag=CFSAN001082_RS32495;product=zinc uptake transcriptional repressor Zur;protein_id=WP_017441254.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	20459	21769	.	+	.	ID=gene-CFSAN001082_RS32500;Name=CFSAN001082_RS32500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32500;old_locus_tag=CFSAN001082_08596
NZ_APAH01000166.1	Protein Homology	CDS	20459	21769	.	+	0	ID=cds-WP_023254170.1;Parent=gene-CFSAN001082_RS32500;Dbxref=GenBank:WP_023254170.1;Name=WP_023254170.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463107.1;locus_tag=CFSAN001082_RS32500;product=conjugal transfer protein TraF;protein_id=WP_023254170.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	21857	22855	.	+	.	ID=gene-CFSAN001082_RS32505;Name=dusA;gbkey=Gene;gene=dusA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32505;old_locus_tag=CFSAN001082_08601
NZ_APAH01000166.1	Protein Homology	CDS	21857	22855	.	+	0	ID=cds-WP_023254171.1;Parent=gene-CFSAN001082_RS32505;Dbxref=GenBank:WP_023254171.1;Name=WP_023254171.1;Ontology_term=GO:0002943,GO:0017150,GO:0050660;gbkey=CDS;gene=dusA;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA dihydrouridine synthesis|0002943||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463108.1;locus_tag=CFSAN001082_RS32505;product=tRNA dihydrouridine(20/20a) synthase DusA;protein_id=WP_023254171.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	23023	23265	.	+	.	ID=gene-CFSAN001082_RS32510;Name=pspG;gbkey=Gene;gene=pspG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32510;old_locus_tag=CFSAN001082_08606
NZ_APAH01000166.1	Protein Homology	CDS	23023	23265	.	+	0	ID=cds-WP_000891414.1;Parent=gene-CFSAN001082_RS32510;Dbxref=GenBank:WP_000891414.1;Name=WP_000891414.1;gbkey=CDS;gene=pspG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463109.1;locus_tag=CFSAN001082_RS32510;product=envelope stress response protein PspG;protein_id=WP_000891414.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	23440	24423	.	-	.	ID=gene-CFSAN001082_RS32515;Name=CFSAN001082_RS32515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32515;old_locus_tag=CFSAN001082_08611
NZ_APAH01000166.1	Protein Homology	CDS	23440	24423	.	-	0	ID=cds-WP_000235555.1;Parent=gene-CFSAN001082_RS32515;Dbxref=GenBank:WP_000235555.1;Name=WP_000235555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463110.1;locus_tag=CFSAN001082_RS32515;product=quinone oxidoreductase;protein_id=WP_000235555.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	24488	25903	.	+	.	ID=gene-CFSAN001082_RS32520;Name=dnaB;gbkey=Gene;gene=dnaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32520;old_locus_tag=CFSAN001082_08616
NZ_APAH01000166.1	Protein Homology	CDS	24488	25903	.	+	0	ID=cds-WP_000918353.1;Parent=gene-CFSAN001082_RS32520;Dbxref=GenBank:WP_000918353.1;Name=WP_000918353.1;gbkey=CDS;gene=dnaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463111.1;locus_tag=CFSAN001082_RS32520;product=replicative DNA helicase;protein_id=WP_000918353.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	25935	27014	.	+	.	ID=gene-CFSAN001082_RS32525;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32525;old_locus_tag=CFSAN001082_08621
NZ_APAH01000166.1	Protein Homology	CDS	25935	27014	.	+	0	ID=cds-WP_001147297.1;Parent=gene-CFSAN001082_RS32525;Dbxref=GenBank:WP_001147297.1;Name=WP_001147297.1;Ontology_term=GO:0006522,GO:0009252,GO:0008784;gbkey=CDS;gene=alr;go_function=alanine racemase activity|0008784||IEA;go_process=alanine metabolic process|0006522||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463112.1;locus_tag=CFSAN001082_RS32525;product=alanine racemase;protein_id=WP_001147297.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	27200	28393	.	+	.	ID=gene-CFSAN001082_RS32530;Name=tyrB;gbkey=Gene;gene=tyrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32530;old_locus_tag=CFSAN001082_08626
NZ_APAH01000166.1	Protein Homology	CDS	27200	28393	.	+	0	ID=cds-WP_023254172.1;Parent=gene-CFSAN001082_RS32530;Dbxref=GenBank:WP_023254172.1;Name=WP_023254172.1;gbkey=CDS;gene=tyrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463113.1;locus_tag=CFSAN001082_RS32530;product=aromatic amino acid transaminase;protein_id=WP_023254172.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	28580	29293	.	+	.	ID=gene-CFSAN001082_RS32535;Name=aphA;gbkey=Gene;gene=aphA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32535;old_locus_tag=CFSAN001082_08631
NZ_APAH01000166.1	Protein Homology	CDS	28580	29293	.	+	0	ID=cds-WP_000724435.1;Parent=gene-CFSAN001082_RS32535;Dbxref=GenBank:WP_000724435.1;Name=WP_000724435.1;Ontology_term=GO:0003993,GO:0030288;gbkey=CDS;gene=aphA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=acid phosphatase activity|0003993||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463114.1;locus_tag=CFSAN001082_RS32535;product=acid phosphatase AphA;protein_id=WP_000724435.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	29422	29838	.	+	.	ID=gene-CFSAN001082_RS32540;Name=CFSAN001082_RS32540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32540;old_locus_tag=CFSAN001082_08636
NZ_APAH01000166.1	Protein Homology	CDS	29422	29838	.	+	0	ID=cds-WP_000270392.1;Parent=gene-CFSAN001082_RS32540;Dbxref=GenBank:WP_000270392.1;Name=WP_000270392.1;Ontology_term=GO:0003824,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463115.1;locus_tag=CFSAN001082_RS32540;product=secondary thiamine-phosphate synthase enzyme YjbQ;protein_id=WP_000270392.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	29841	30197	.	+	.	ID=gene-CFSAN001082_RS32545;Name=CFSAN001082_RS32545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32545;old_locus_tag=CFSAN001082_08641
NZ_APAH01000166.1	Protein Homology	CDS	29841	30197	.	+	0	ID=cds-WP_000155665.1;Parent=gene-CFSAN001082_RS32545;Dbxref=GenBank:WP_000155665.1;Name=WP_000155665.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463116.1;locus_tag=CFSAN001082_RS32545;product=MmcQ/YjbR family DNA-binding protein;protein_id=WP_000155665.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	30198	30536	.	-	.	ID=gene-CFSAN001082_RS32550;Name=CFSAN001082_RS32550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32550;old_locus_tag=CFSAN001082_08646
NZ_APAH01000166.1	Protein Homology	CDS	30198	30536	.	-	0	ID=cds-WP_023254173.1;Parent=gene-CFSAN001082_RS32550;Dbxref=GenBank:WP_023254173.1;Name=WP_023254173.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463117.1;locus_tag=CFSAN001082_RS32550;product=hypothetical protein;protein_id=WP_023254173.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	30523	30978	.	-	.	ID=gene-CFSAN001082_RS32555;Name=CFSAN001082_RS32555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32555;old_locus_tag=CFSAN001082_08651
NZ_APAH01000166.1	Protein Homology	CDS	30523	30978	.	-	0	ID=cds-WP_000432191.1;Parent=gene-CFSAN001082_RS32555;Dbxref=GenBank:WP_000432191.1;Name=WP_000432191.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463118.1;locus_tag=CFSAN001082_RS32555;product=hypothetical protein;protein_id=WP_000432191.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	31110	33935	.	-	.	ID=gene-CFSAN001082_RS32560;Name=uvrA;gbkey=Gene;gene=uvrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32560;old_locus_tag=CFSAN001082_08656
NZ_APAH01000166.1	Protein Homology	CDS	31110	33935	.	-	0	ID=cds-WP_000357725.1;Parent=gene-CFSAN001082_RS32560;Dbxref=GenBank:WP_000357725.1;Name=WP_000357725.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887;gbkey=CDS;gene=uvrA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463119.1;locus_tag=CFSAN001082_RS32560;product=excinuclease ABC subunit UvrA;protein_id=WP_000357725.1;transl_table=11
NZ_APAH01000166.1	RefSeq	gene	34183	34713	.	+	.	ID=gene-CFSAN001082_RS32565;Name=ssb1;gbkey=Gene;gene=ssb1;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32565;old_locus_tag=CFSAN001082_08661
NZ_APAH01000166.1	Protein Homology	CDS	34183	34713	.	+	0	ID=cds-WP_000168325.1;Parent=gene-CFSAN001082_RS32565;Dbxref=GenBank:WP_000168325.1;Name=WP_000168325.1;gbkey=CDS;gene=ssb1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463121.1;locus_tag=CFSAN001082_RS32565;product=single-stranded DNA-binding protein SSB1;protein_id=WP_000168325.1;transl_table=11
##sequence-region NZ_APAH01000167.1 1 3341
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000167.1	RefSeq	region	1	3341	.	+	.	ID=NZ_APAH01000167.1:1..3341;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000167.1	RefSeq	gene	96	3341	.	+	.	ID=gene-CFSAN001082_RS32570;Name=CFSAN001082_RS32570;end_range=3341,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32570;old_locus_tag=CFSAN001082_08666;partial=true
NZ_APAH01000167.1	Protein Homology	CDS	96	3341	.	+	0	ID=cds-WP_023254174.1;Parent=gene-CFSAN001082_RS32570;Dbxref=GenBank:WP_023254174.1;Name=WP_023254174.1;end_range=3341,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747458.1;locus_tag=CFSAN001082_RS32570;partial=true;product=autotransporter-associated beta strand repeat-containing protein;protein_id=WP_023254174.1;transl_table=11
##sequence-region NZ_APAH01000168.1 1 26878
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000168.1	RefSeq	region	1	26878	.	+	.	ID=NZ_APAH01000168.1:1..26878;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000168.1	RefSeq	gene	41	1132	.	+	.	ID=gene-CFSAN001082_RS32575;Name=ompF;gbkey=Gene;gene=ompF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32575;old_locus_tag=CFSAN001082_08671
NZ_APAH01000168.1	Protein Homology	CDS	41	1132	.	+	0	ID=cds-WP_000977709.1;Parent=gene-CFSAN001082_RS32575;Dbxref=GenBank:WP_000977709.1;Name=WP_000977709.1;gbkey=CDS;gene=ompF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459974.1;locus_tag=CFSAN001082_RS32575;product=porin OmpF;protein_id=WP_000977709.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	1317	2507	.	+	.	ID=gene-CFSAN001082_RS32580;Name=aspC;gbkey=Gene;gene=aspC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32580;old_locus_tag=CFSAN001082_08676
NZ_APAH01000168.1	Protein Homology	CDS	1317	2507	.	+	0	ID=cds-WP_000462653.1;Parent=gene-CFSAN001082_RS32580;Dbxref=GenBank:WP_000462653.1;Name=WP_000462653.1;gbkey=CDS;gene=aspC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009653304.1;locus_tag=CFSAN001082_RS32580;product=aspartate transaminase;protein_id=WP_000462653.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	2569	3216	.	-	.	ID=gene-CFSAN001082_RS32585;Name=CFSAN001082_RS32585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32585;old_locus_tag=CFSAN001082_08681
NZ_APAH01000168.1	Protein Homology	CDS	2569	3216	.	-	0	ID=cds-WP_001109478.1;Parent=gene-CFSAN001082_RS32585;Dbxref=GenBank:WP_001109478.1;Name=WP_001109478.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003035823.1;locus_tag=CFSAN001082_RS32585;product=MBL fold metallo-hydrolase;protein_id=WP_001109478.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	3244	3792	.	-	.	ID=gene-CFSAN001082_RS32590;Name=CFSAN001082_RS32590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32590;old_locus_tag=CFSAN001082_08686
NZ_APAH01000168.1	Protein Homology	CDS	3244	3792	.	-	0	ID=cds-WP_000357052.1;Parent=gene-CFSAN001082_RS32590;Dbxref=GenBank:WP_000357052.1;Name=WP_000357052.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459971.1;locus_tag=CFSAN001082_RS32590;product=YcbK family protein;protein_id=WP_000357052.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	4052	5896	.	-	.	ID=gene-CFSAN001082_RS32595;Name=ldtD;gbkey=Gene;gene=ldtD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32595;old_locus_tag=CFSAN001082_08691
NZ_APAH01000168.1	Protein Homology	CDS	4052	5896	.	-	0	ID=cds-WP_023254175.1;Parent=gene-CFSAN001082_RS32595;Dbxref=GenBank:WP_023254175.1;Name=WP_023254175.1;Ontology_term=GO:0016740;gbkey=CDS;gene=ldtD;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459970.1;locus_tag=CFSAN001082_RS32595;product=L%2CD-transpeptidase;protein_id=WP_023254175.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	6241	10707	.	-	.	ID=gene-CFSAN001082_RS32600;Name=mukB;gbkey=Gene;gene=mukB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32600;old_locus_tag=CFSAN001082_08696
NZ_APAH01000168.1	Protein Homology	CDS	6241	10707	.	-	0	ID=cds-WP_000572741.1;Parent=gene-CFSAN001082_RS32600;Dbxref=GenBank:WP_000572741.1;Name=WP_000572741.1;Ontology_term=GO:0007059,GO:0030261,GO:0003677;gbkey=CDS;gene=mukB;go_function=DNA binding|0003677||IEA;go_process=chromosome segregation|0007059||IEA,chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459969.1;locus_tag=CFSAN001082_RS32600;product=chromosome partition protein MukB;protein_id=WP_000572741.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	10707	11411	.	-	.	ID=gene-CFSAN001082_RS32605;Name=mukE;gbkey=Gene;gene=mukE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32605;old_locus_tag=CFSAN001082_08701
NZ_APAH01000168.1	Protein Homology	CDS	10707	11411	.	-	0	ID=cds-WP_000060025.1;Parent=gene-CFSAN001082_RS32605;Dbxref=GenBank:WP_000060025.1;Name=WP_000060025.1;Ontology_term=GO:0007059,GO:0030261;gbkey=CDS;gene=mukE;go_process=chromosome segregation|0007059||IEA,chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459968.1;locus_tag=CFSAN001082_RS32605;product=chromosome partition protein MukE;protein_id=WP_000060025.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	11392	12714	.	-	.	ID=gene-CFSAN001082_RS32610;Name=mukF;gbkey=Gene;gene=mukF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32610;old_locus_tag=CFSAN001082_08706
NZ_APAH01000168.1	Protein Homology	CDS	11392	12714	.	-	0	ID=cds-WP_001288828.1;Parent=gene-CFSAN001082_RS32610;Dbxref=GenBank:WP_001288828.1;Name=WP_001288828.1;Ontology_term=GO:0007059,GO:0005509;gbkey=CDS;gene=mukF;go_function=calcium ion binding|0005509||IEA;go_process=chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123549.1;locus_tag=CFSAN001082_RS32610;product=chromosome partition protein MukF;protein_id=WP_001288828.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	12707	13510	.	-	.	ID=gene-CFSAN001082_RS32615;Name=cmoM;gbkey=Gene;gene=cmoM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32615;old_locus_tag=CFSAN001082_08711
NZ_APAH01000168.1	Protein Homology	CDS	12707	13510	.	-	0	ID=cds-WP_001154025.1;Parent=gene-CFSAN001082_RS32615;Dbxref=GenBank:WP_001154025.1;Name=WP_001154025.1;gbkey=CDS;gene=cmoM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459966.1;locus_tag=CFSAN001082_RS32615;product=tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM;protein_id=WP_001154025.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	13646	14422	.	+	.	ID=gene-CFSAN001082_RS32620;Name=elyC;gbkey=Gene;gene=elyC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32620;old_locus_tag=CFSAN001082_08716
NZ_APAH01000168.1	Protein Homology	CDS	13646	14422	.	+	0	ID=cds-WP_000899563.1;Parent=gene-CFSAN001082_RS32620;Dbxref=GenBank:WP_000899563.1;Name=WP_000899563.1;gbkey=CDS;gene=elyC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459965.1;locus_tag=CFSAN001082_RS32620;product=envelope biogenesis factor ElyC;protein_id=WP_000899563.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	14402	15295	.	-	.	ID=gene-CFSAN001082_RS32625;Name=CFSAN001082_RS32625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32625;old_locus_tag=CFSAN001082_08721
NZ_APAH01000168.1	Protein Homology	CDS	14402	15295	.	-	0	ID=cds-WP_000436893.1;Parent=gene-CFSAN001082_RS32625;Dbxref=GenBank:WP_000436893.1;Name=WP_000436893.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459964.1;locus_tag=CFSAN001082_RS32625;product=YcbJ family phosphotransferase;protein_id=WP_000436893.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	15506	16252	.	-	.	ID=gene-CFSAN001082_RS32630;Name=kdsB;gbkey=Gene;gene=kdsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32630;old_locus_tag=CFSAN001082_08726
NZ_APAH01000168.1	Protein Homology	CDS	15506	16252	.	-	0	ID=cds-WP_000011576.1;Parent=gene-CFSAN001082_RS32630;Dbxref=GenBank:WP_000011576.1;Name=WP_000011576.1;Ontology_term=GO:0009244,GO:0008690;gbkey=CDS;gene=kdsB;go_function=3-deoxy-manno-octulosonate cytidylyltransferase activity|0008690||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459963.1;locus_tag=CFSAN001082_RS32630;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=WP_000011576.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	16249	16431	.	-	.	ID=gene-CFSAN001082_RS32635;Name=ycaR;gbkey=Gene;gene=ycaR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32635;old_locus_tag=CFSAN001082_08731
NZ_APAH01000168.1	Protein Homology	CDS	16249	16431	.	-	0	ID=cds-WP_000350061.1;Parent=gene-CFSAN001082_RS32635;Dbxref=GenBank:WP_000350061.1;Name=WP_000350061.1;gbkey=CDS;gene=ycaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459962.1;locus_tag=CFSAN001082_RS32635;product=protein YcaR;protein_id=WP_000350061.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	16483	17715	.	-	.	ID=gene-CFSAN001082_RS32640;Name=CFSAN001082_RS32640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32640;old_locus_tag=CFSAN001082_08736
NZ_APAH01000168.1	Protein Homology	CDS	16483	17715	.	-	0	ID=cds-WP_023254176.1;Parent=gene-CFSAN001082_RS32640;Dbxref=GenBank:WP_023254176.1;Name=WP_023254176.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459961.1;locus_tag=CFSAN001082_RS32640;product=winged helix-turn-helix domain-containing protein;protein_id=WP_023254176.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	17759	18736	.	-	.	ID=gene-CFSAN001082_RS32645;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32645;old_locus_tag=CFSAN001082_08741
NZ_APAH01000168.1	Protein Homology	CDS	17759	18736	.	-	0	ID=cds-WP_000561679.1;Parent=gene-CFSAN001082_RS32645;Dbxref=GenBank:WP_000561679.1;Name=WP_000561679.1;Ontology_term=GO:0009245,GO:0009029;gbkey=CDS;gene=lpxK;go_function=tetraacyldisaccharide 4'-kinase activity|0009029||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459960.1;locus_tag=CFSAN001082_RS32645;product=tetraacyldisaccharide 4'-kinase;protein_id=WP_000561679.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	18733	20481	.	-	.	ID=gene-CFSAN001082_RS32650;Name=msbA;gbkey=Gene;gene=msbA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32650;old_locus_tag=CFSAN001082_08746
NZ_APAH01000168.1	Protein Homology	CDS	18733	20481	.	-	0	ID=cds-WP_000551246.1;Parent=gene-CFSAN001082_RS32650;Dbxref=GenBank:WP_000551246.1;Name=WP_000551246.1;Ontology_term=GO:0055085,GO:0005524,GO:0034040,GO:0140359,GO:0016020;gbkey=CDS;gene=msbA;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled lipid transmembrane transporter activity|0034040||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459959.1;locus_tag=CFSAN001082_RS32650;product=lipid A ABC transporter ATP-binding protein/permease MsbA;protein_id=WP_000551246.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	20518	22782	.	-	.	ID=gene-CFSAN001082_RS32655;Name=CFSAN001082_RS32655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32655;old_locus_tag=CFSAN001082_08751
NZ_APAH01000168.1	Protein Homology	CDS	20518	22782	.	-	0	ID=cds-WP_023254177.1;Parent=gene-CFSAN001082_RS32655;Dbxref=GenBank:WP_023254177.1;Name=WP_023254177.1;Ontology_term=GO:0030420,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=establishment of competence for transformation|0030420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459958.1;locus_tag=CFSAN001082_RS32655;product=ComEC family protein;protein_id=WP_023254177.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	23012	23296	.	-	.	ID=gene-CFSAN001082_RS32660;Name=ihfB;gbkey=Gene;gene=ihfB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32660;old_locus_tag=CFSAN001082_08756
NZ_APAH01000168.1	Protein Homology	CDS	23012	23296	.	-	0	ID=cds-WP_000167332.1;Parent=gene-CFSAN001082_RS32660;Dbxref=GenBank:WP_000167332.1;Name=WP_000167332.1;Ontology_term=GO:0006310,GO:0006355,GO:0006417,GO:0075713,GO:0003677,GO:0005694;gbkey=CDS;gene=ihfB;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA,regulation of translation|0006417||IEA,establishment of integrated proviral latency|0075713||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006819309.1;locus_tag=CFSAN001082_RS32660;product=integration host factor subunit beta;protein_id=WP_000167332.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	23452	25125	.	-	.	ID=gene-CFSAN001082_RS32665;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32665;old_locus_tag=CFSAN001082_08761
NZ_APAH01000168.1	Protein Homology	CDS	23452	25125	.	-	0	ID=cds-WP_000140325.1;Parent=gene-CFSAN001082_RS32665;Dbxref=GenBank:WP_000140325.1;Name=WP_000140325.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsA;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123560.1;locus_tag=CFSAN001082_RS32665;product=30S ribosomal protein S1;protein_id=WP_000140325.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	25239	25922	.	-	.	ID=gene-CFSAN001082_RS32670;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32670;old_locus_tag=CFSAN001082_08766
NZ_APAH01000168.1	Protein Homology	CDS	25239	25922	.	-	0	ID=cds-WP_000125007.1;Parent=gene-CFSAN001082_RS32670;Dbxref=GenBank:WP_000125007.1;Name=WP_000125007.1;Ontology_term=GO:0015949,GO:0004127,GO:0005524;gbkey=CDS;gene=cmk;go_function=(d)CMP kinase activity|0004127||IEA,ATP binding|0005524||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000125007.1;locus_tag=CFSAN001082_RS32670;product=(d)CMP kinase;protein_id=WP_000125007.1;transl_table=11
NZ_APAH01000168.1	RefSeq	gene	26095	26856	.	-	.	ID=gene-CFSAN001082_RS32675;Name=CFSAN001082_RS32675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32675;old_locus_tag=CFSAN001082_08771
NZ_APAH01000168.1	Protein Homology	CDS	26095	26856	.	-	0	ID=cds-WP_000792301.1;Parent=gene-CFSAN001082_RS32675;Dbxref=GenBank:WP_000792301.1;Name=WP_000792301.1;Ontology_term=GO:0004222,GO:0008237,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459954.1;locus_tag=CFSAN001082_RS32675;product=M48 family metallopeptidase;protein_id=WP_000792301.1;transl_table=11
##sequence-region NZ_APAH01000169.1 1 4249
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000169.1	RefSeq	region	1	4249	.	+	.	ID=NZ_APAH01000169.1:1..4249;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000169.1	RefSeq	pseudogene	1	309	.	+	.	ID=gene-CFSAN001082_RS32680;Name=ydiV;gbkey=Gene;gene=ydiV;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS32680;old_locus_tag=CFSAN001082_08776;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000169.1	Protein Homology	CDS	1	309	.	+	0	ID=cds-CFSAN001082_RS32680;Parent=gene-CFSAN001082_RS32680;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;gene=ydiV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460310.1;locus_tag=CFSAN001082_RS32680;partial=true;product=anti-FlhDC factor YdiV;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000169.1	RefSeq	gene	371	1813	.	+	.	ID=gene-CFSAN001082_RS32685;Name=selO;gbkey=Gene;gene=selO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32685;old_locus_tag=CFSAN001082_08781
NZ_APAH01000169.1	Protein Homology	CDS	371	1813	.	+	0	ID=cds-WP_023254179.1;Parent=gene-CFSAN001082_RS32685;Dbxref=GenBank:WP_023254179.1;Name=WP_023254179.1;Ontology_term=GO:0018117,GO:0005524,GO:0070733;gbkey=CDS;gene=selO;go_function=ATP binding|0005524||IEA,AMPylase activity|0070733||IEA;go_process=protein adenylylation|0018117||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460311.1;locus_tag=CFSAN001082_RS32685;product=protein adenylyltransferase SelO;protein_id=WP_023254179.1;transl_table=11
NZ_APAH01000169.1	RefSeq	gene	1848	2039	.	-	.	ID=gene-CFSAN001082_RS32690;Name=hemP;gbkey=Gene;gene=hemP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32690;old_locus_tag=CFSAN001082_08786
NZ_APAH01000169.1	Protein Homology	CDS	1848	2039	.	-	0	ID=cds-WP_000089115.1;Parent=gene-CFSAN001082_RS32690;Dbxref=GenBank:WP_000089115.1;Name=WP_000089115.1;gbkey=CDS;gene=hemP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460312.1;locus_tag=CFSAN001082_RS32690;product=hemin uptake protein HemP;protein_id=WP_000089115.1;transl_table=11
NZ_APAH01000169.1	RefSeq	gene	2196	3242	.	-	.	ID=gene-CFSAN001082_RS32695;Name=aroH;gbkey=Gene;gene=aroH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32695;old_locus_tag=CFSAN001082_08791
NZ_APAH01000169.1	Protein Homology	CDS	2196	3242	.	-	0	ID=cds-WP_023254180.1;Parent=gene-CFSAN001082_RS32695;Dbxref=GenBank:WP_023254180.1;Name=WP_023254180.1;gbkey=CDS;gene=aroH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460313.1;locus_tag=CFSAN001082_RS32695;product=3-deoxy-7-phosphoheptulonate synthase AroH;protein_id=WP_023254180.1;transl_table=11
NZ_APAH01000169.1	RefSeq	gene	3398	4231	.	-	.	ID=gene-CFSAN001082_RS32700;Name=ppsR;gbkey=Gene;gene=ppsR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32700;old_locus_tag=CFSAN001082_08796
NZ_APAH01000169.1	Protein Homology	CDS	3398	4231	.	-	0	ID=cds-WP_000370992.1;Parent=gene-CFSAN001082_RS32700;Dbxref=GenBank:WP_000370992.1;Name=WP_000370992.1;Ontology_term=GO:0004674,GO:0005524,GO:0016776,GO:0043531;gbkey=CDS;gene=ppsR;go_function=protein serine/threonine kinase activity|0004674||IEA,ATP binding|0005524||IEA,phosphotransferase activity%2C phosphate group as acceptor|0016776||IEA,ADP binding|0043531||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460314.1;locus_tag=CFSAN001082_RS32700;product=posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR;protein_id=WP_000370992.1;transl_table=11
##sequence-region NZ_APAH01000170.1 1 1912
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000170.1	RefSeq	region	1	1912	.	+	.	ID=NZ_APAH01000170.1:1..1912;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000170.1	RefSeq	gene	346	627	.	+	.	ID=gene-CFSAN001082_RS32705;Name=CFSAN001082_RS32705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32705;old_locus_tag=CFSAN001082_08801
NZ_APAH01000170.1	Protein Homology	CDS	346	627	.	+	0	ID=cds-WP_000719058.1;Parent=gene-CFSAN001082_RS32705;Dbxref=GenBank:WP_000719058.1;Name=WP_000719058.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463128.1;locus_tag=CFSAN001082_RS32705;product=YjcB family protein;protein_id=WP_000719058.1;transl_table=11
NZ_APAH01000170.1	RefSeq	pseudogene	905	1912	.	-	.	ID=gene-CFSAN001082_RS32710;Name=siiF;end_range=1912,.;gbkey=Gene;gene=siiF;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS32710;old_locus_tag=CFSAN001082_08806;partial=true;pseudo=true
NZ_APAH01000170.1	Protein Homology	CDS	905	1912	.	-	0	ID=cds-CFSAN001082_RS32710;Parent=gene-CFSAN001082_RS32710;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=1912,.;gbkey=CDS;gene=siiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463127.1;locus_tag=CFSAN001082_RS32710;partial=true;product=SPI-4 type I secretion system protein SiiF;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000171.1 1 9212
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000171.1	RefSeq	region	1	9212	.	+	.	ID=NZ_APAH01000171.1:1..9212;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000171.1	RefSeq	gene	278	589	.	+	.	ID=gene-CFSAN001082_RS32715;Name=drpB;gbkey=Gene;gene=drpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32715;old_locus_tag=CFSAN001082_08816
NZ_APAH01000171.1	Protein Homology	CDS	278	589	.	+	0	ID=cds-WP_000107435.1;Parent=gene-CFSAN001082_RS32715;Dbxref=GenBank:WP_000107435.1;Name=WP_000107435.1;Ontology_term=GO:0051301;gbkey=CDS;gene=drpB;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460945.1;locus_tag=CFSAN001082_RS32715;product=cell division protein DrpB;protein_id=WP_000107435.1;transl_table=11
NZ_APAH01000171.1	RefSeq	gene	669	1364	.	+	.	ID=gene-CFSAN001082_RS32720;Name=CFSAN001082_RS32720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32720;old_locus_tag=CFSAN001082_08821
NZ_APAH01000171.1	Protein Homology	CDS	669	1364	.	+	0	ID=cds-WP_000377041.1;Parent=gene-CFSAN001082_RS32720;Dbxref=GenBank:WP_000377041.1;Name=WP_000377041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460944.1;locus_tag=CFSAN001082_RS32720;product=phosphohydrolase;protein_id=WP_000377041.1;transl_table=11
NZ_APAH01000171.1	RefSeq	gene	1438	2868	.	+	.	ID=gene-CFSAN001082_RS32725;Name=CFSAN001082_RS32725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32725;old_locus_tag=CFSAN001082_08826
NZ_APAH01000171.1	Protein Homology	CDS	1438	2868	.	+	0	ID=cds-WP_023254182.1;Parent=gene-CFSAN001082_RS32725;Dbxref=GenBank:WP_023254182.1;Name=WP_023254182.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460943.1;locus_tag=CFSAN001082_RS32725;product=DNA cytosine methyltransferase;protein_id=WP_023254182.1;transl_table=11
NZ_APAH01000171.1	RefSeq	gene	2849	3319	.	+	.	ID=gene-CFSAN001082_RS32730;Name=CFSAN001082_RS32730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32730;old_locus_tag=CFSAN001082_08831
NZ_APAH01000171.1	Protein Homology	CDS	2849	3319	.	+	0	ID=cds-WP_000785978.1;Parent=gene-CFSAN001082_RS32730;Dbxref=GenBank:WP_000785978.1;Name=WP_000785978.1;Ontology_term=GO:0006298,GO:0004519;gbkey=CDS;go_function=endonuclease activity|0004519||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460942.1;locus_tag=CFSAN001082_RS32730;product=very short patch repair endonuclease;protein_id=WP_000785978.1;transl_table=11
NZ_APAH01000171.1	RefSeq	gene	3308	4228	.	-	.	ID=gene-CFSAN001082_RS32735;Name=yedA;gbkey=Gene;gene=yedA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32735;old_locus_tag=CFSAN001082_08836
NZ_APAH01000171.1	Protein Homology	CDS	3308	4228	.	-	0	ID=cds-WP_023254183.1;Parent=gene-CFSAN001082_RS32735;Dbxref=GenBank:WP_023254183.1;Name=WP_023254183.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yedA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460941.1;locus_tag=CFSAN001082_RS32735;product=drug/metabolite exporter YedA;protein_id=WP_023254183.1;transl_table=11
NZ_APAH01000171.1	RefSeq	gene	4398	5315	.	+	.	ID=gene-CFSAN001082_RS32740;Name=CFSAN001082_RS32740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32740;old_locus_tag=CFSAN001082_08841
NZ_APAH01000171.1	Protein Homology	CDS	4398	5315	.	+	0	ID=cds-WP_085920526.1;Parent=gene-CFSAN001082_RS32740;Dbxref=GenBank:WP_085920526.1;Name=WP_085920526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310723.1;locus_tag=CFSAN001082_RS32740;product=DUF808 domain-containing protein;protein_id=WP_085920526.1;transl_table=11
NZ_APAH01000171.1	RefSeq	gene	5392	5577	.	+	.	ID=gene-CFSAN001082_RS32745;Name=CFSAN001082_RS32745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32745;old_locus_tag=CFSAN001082_08846
NZ_APAH01000171.1	Protein Homology	CDS	5392	5577	.	+	0	ID=cds-WP_001521741.1;Parent=gene-CFSAN001082_RS32745;Dbxref=GenBank:WP_001521741.1;Name=WP_001521741.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001549490.1;locus_tag=CFSAN001082_RS32745;product=YodC family protein;protein_id=WP_001521741.1;transl_table=11
NZ_APAH01000171.1	RefSeq	gene	5742	7454	.	+	.	ID=gene-CFSAN001082_RS32750;Name=dgcQ;gbkey=Gene;gene=dgcQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32750;old_locus_tag=CFSAN001082_08851
NZ_APAH01000171.1	Protein Homology	CDS	5742	7454	.	+	0	ID=cds-WP_001119828.1;Parent=gene-CFSAN001082_RS32750;Dbxref=GenBank:WP_001119828.1;Name=WP_001119828.1;gbkey=CDS;gene=dgcQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460938.1;locus_tag=CFSAN001082_RS32750;product=cellulose biosynthesis regulator diguanylate cyclase DgcQ;protein_id=WP_001119828.1;transl_table=11
NZ_APAH01000171.1	RefSeq	gene	7433	8248	.	-	.	ID=gene-CFSAN001082_RS32755;Name=CFSAN001082_RS32755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32755;old_locus_tag=CFSAN001082_08856
NZ_APAH01000171.1	Protein Homology	CDS	7433	8248	.	-	0	ID=cds-WP_000948794.1;Parent=gene-CFSAN001082_RS32755;Dbxref=GenBank:WP_000948794.1;Name=WP_000948794.1;Ontology_term=GO:0051479,GO:0050531;gbkey=CDS;go_function=mannosyl-3-phosphoglycerate phosphatase activity|0050531||IEA;go_process=mannosylglycerate biosynthetic process|0051479||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460937.1;locus_tag=CFSAN001082_RS32755;product=mannosyl-3-phosphoglycerate phosphatase-related protein;protein_id=WP_000948794.1;transl_table=11
NZ_APAH01000171.1	RefSeq	gene	8558	8785	.	-	.	ID=gene-CFSAN001082_RS32760;Name=yodD;gbkey=Gene;gene=yodD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32760;old_locus_tag=CFSAN001082_08861
NZ_APAH01000171.1	Protein Homology	CDS	8558	8785	.	-	0	ID=cds-WP_000844798.1;Parent=gene-CFSAN001082_RS32760;Dbxref=GenBank:WP_000844798.1;Name=WP_000844798.1;gbkey=CDS;gene=yodD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460936.1;locus_tag=CFSAN001082_RS32760;product=YodD family peroxide/acid resistance protein;protein_id=WP_000844798.1;transl_table=11
NZ_APAH01000171.1	RefSeq	gene	8914	9108	.	+	.	ID=gene-CFSAN001082_RS32765;Name=dsrB;gbkey=Gene;gene=dsrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32765;old_locus_tag=CFSAN001082_08866
NZ_APAH01000171.1	Protein Homology	CDS	8914	9108	.	+	0	ID=cds-WP_000867218.1;Parent=gene-CFSAN001082_RS32765;Dbxref=GenBank:WP_000867218.1;Name=WP_000867218.1;gbkey=CDS;gene=dsrB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001736680.1;locus_tag=CFSAN001082_RS32765;product=protein DsrB;protein_id=WP_000867218.1;transl_table=11
NZ_APAH01000171.1	RefSeq	pseudogene	9147	9212	.	-	.	ID=gene-CFSAN001082_RS47805;Name=rcsA;end_range=9212,.;gbkey=Gene;gene=rcsA;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47805;partial=true;pseudo=true
NZ_APAH01000171.1	Protein Homology	CDS	9147	9212	.	-	0	ID=cds-CFSAN001082_RS47805;Parent=gene-CFSAN001082_RS47805;Note=with RcsB is a positive regulator of capsular polysaccharide synthesis genes%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=9212,.;gbkey=CDS;gene=rcsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310717.1;locus_tag=CFSAN001082_RS47805;partial=true;product=transcriptional regulator RcsA;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000172.1 1 8450
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000172.1	RefSeq	region	1	8450	.	+	.	ID=NZ_APAH01000172.1:1..8450;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000172.1	RefSeq	gene	38	1630	.	-	.	ID=gene-CFSAN001082_RS32770;Name=CFSAN001082_RS32770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32770;old_locus_tag=CFSAN001082_08871
NZ_APAH01000172.1	Protein Homology	CDS	38	1630	.	-	0	ID=cds-WP_000961479.1;Parent=gene-CFSAN001082_RS32770;Dbxref=GenBank:WP_000961479.1;Name=WP_000961479.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459815.1;locus_tag=CFSAN001082_RS32770;product=ABC-F family ATPase;protein_id=WP_000961479.1;transl_table=11
NZ_APAH01000172.1	RefSeq	gene	1849	2769	.	+	.	ID=gene-CFSAN001082_RS32775;Name=ldtB;gbkey=Gene;gene=ldtB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32775;old_locus_tag=CFSAN001082_08876
NZ_APAH01000172.1	Protein Homology	CDS	1849	2769	.	+	0	ID=cds-WP_001056404.1;Parent=gene-CFSAN001082_RS32775;Dbxref=GenBank:WP_001056404.1;Name=WP_001056404.1;gbkey=CDS;gene=ldtB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459814.1;locus_tag=CFSAN001082_RS32775;product=L%2CD-transpeptidase;protein_id=WP_001056404.1;transl_table=11
NZ_APAH01000172.1	RefSeq	gene	2813	3925	.	-	.	ID=gene-CFSAN001082_RS32780;Name=CFSAN001082_RS32780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32780;old_locus_tag=CFSAN001082_08881
NZ_APAH01000172.1	Protein Homology	CDS	2813	3925	.	-	0	ID=cds-WP_023254184.1;Parent=gene-CFSAN001082_RS32780;Dbxref=GenBank:WP_023254184.1;Name=WP_023254184.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459813.1;locus_tag=CFSAN001082_RS32780;product=anion transporter;protein_id=WP_023254184.1;transl_table=11
NZ_APAH01000172.1	RefSeq	gene	3922	4395	.	-	.	ID=gene-CFSAN001082_RS32785;Name=mntR;gbkey=Gene;gene=mntR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32785;old_locus_tag=CFSAN001082_08886
NZ_APAH01000172.1	Protein Homology	CDS	3922	4395	.	-	0	ID=cds-WP_000533542.1;Parent=gene-CFSAN001082_RS32785;Dbxref=GenBank:WP_000533542.1;Name=WP_000533542.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700,GO:0046914,GO:0046983;gbkey=CDS;gene=mntR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,transition metal ion binding|0046914||IEA,protein dimerization activity|0046983||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459812.1;locus_tag=CFSAN001082_RS32785;product=manganese-binding transcriptional regulator MntR;protein_id=WP_000533542.1;transl_table=11
NZ_APAH01000172.1	RefSeq	gene	4581	4709	.	+	.	ID=gene-CFSAN001082_RS46855;Name=mntS;gbkey=Gene;gene=mntS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46855
NZ_APAH01000172.1	Protein Homology	CDS	4581	4709	.	+	0	ID=cds-WP_001001755.1;Parent=gene-CFSAN001082_RS46855;Dbxref=GenBank:WP_001001755.1;Name=WP_001001755.1;gbkey=CDS;gene=mntS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_008439233.1;locus_tag=CFSAN001082_RS46855;product=manganase accumulation protein MntS;protein_id=WP_001001755.1;transl_table=11
NZ_APAH01000172.1	RefSeq	gene	4974	6554	.	+	.	ID=gene-CFSAN001082_RS32790;Name=CFSAN001082_RS32790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32790;old_locus_tag=CFSAN001082_08896
NZ_APAH01000172.1	Protein Homology	CDS	4974	6554	.	+	0	ID=cds-WP_023254186.1;Parent=gene-CFSAN001082_RS32790;Dbxref=GenBank:WP_023254186.1;Name=WP_023254186.1;Ontology_term=GO:0009244,GO:1900727,GO:0016776;gbkey=CDS;go_function=phosphotransferase activity%2C phosphate group as acceptor|0016776||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA,osmoregulated periplasmic glucan biosynthetic process|1900727||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459811.1;locus_tag=CFSAN001082_RS32790;product=phosphoethanolamine transferase;protein_id=WP_023254186.1;transl_table=11
NZ_APAH01000172.1	RefSeq	gene	6617	7132	.	-	.	ID=gene-CFSAN001082_RS32795;Name=ompX;gbkey=Gene;gene=ompX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32795;old_locus_tag=CFSAN001082_08901
NZ_APAH01000172.1	Protein Homology	CDS	6617	7132	.	-	0	ID=cds-WP_000716763.1;Parent=gene-CFSAN001082_RS32795;Dbxref=GenBank:WP_000716763.1;Name=WP_000716763.1;gbkey=CDS;gene=ompX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459810.1;locus_tag=CFSAN001082_RS32795;product=outer membrane protein OmpX;protein_id=WP_000716763.1;transl_table=11
NZ_APAH01000172.1	RefSeq	gene	7486	8373	.	+	.	ID=gene-CFSAN001082_RS32800;Name=rhtA;gbkey=Gene;gene=rhtA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32800;old_locus_tag=CFSAN001082_08906
NZ_APAH01000172.1	Protein Homology	CDS	7486	8373	.	+	0	ID=cds-WP_001119554.1;Parent=gene-CFSAN001082_RS32800;Dbxref=GenBank:WP_001119554.1;Name=WP_001119554.1;gbkey=CDS;gene=rhtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459809.1;locus_tag=CFSAN001082_RS32800;product=threonine/homoserine exporter RhtA;protein_id=WP_001119554.1;transl_table=11
##sequence-region NZ_APAH01000173.1 1 18646
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000173.1	RefSeq	region	1	18646	.	+	.	ID=NZ_APAH01000173.1:1..18646;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000173.1	RefSeq	gene	193	1857	.	+	.	ID=gene-CFSAN001082_RS32805;Name=CFSAN001082_RS32805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32805;old_locus_tag=CFSAN001082_08911
NZ_APAH01000173.1	Protein Homology	CDS	193	1857	.	+	0	ID=cds-WP_023254187.1;Parent=gene-CFSAN001082_RS32805;Dbxref=GenBank:WP_023254187.1;Name=WP_023254187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459524.1;locus_tag=CFSAN001082_RS32805;product=acyl-CoA synthetase FdrA;protein_id=WP_023254187.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	1867	3126	.	+	.	ID=gene-CFSAN001082_RS32810;Name=CFSAN001082_RS32810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32810;old_locus_tag=CFSAN001082_08916
NZ_APAH01000173.1	Protein Homology	CDS	1867	3126	.	+	0	ID=cds-WP_000495330.1;Parent=gene-CFSAN001082_RS32810;Dbxref=GenBank:WP_000495330.1;Name=WP_000495330.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459525.1;locus_tag=CFSAN001082_RS32810;product=DUF1116 domain-containing protein;protein_id=WP_000495330.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	3138	3947	.	+	.	ID=gene-CFSAN001082_RS32815;Name=CFSAN001082_RS32815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32815;old_locus_tag=CFSAN001082_08921
NZ_APAH01000173.1	Protein Homology	CDS	3138	3947	.	+	0	ID=cds-WP_001648170.1;Parent=gene-CFSAN001082_RS32815;Dbxref=GenBank:WP_001648170.1;Name=WP_001648170.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459526.1;locus_tag=CFSAN001082_RS32815;product=DUF2877 domain-containing protein;protein_id=WP_001648170.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	3951	4844	.	+	.	ID=gene-CFSAN001082_RS32820;Name=CFSAN001082_RS32820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32820;old_locus_tag=CFSAN001082_08926
NZ_APAH01000173.1	Protein Homology	CDS	3951	4844	.	+	0	ID=cds-WP_000855342.1;Parent=gene-CFSAN001082_RS32820;Dbxref=GenBank:WP_000855342.1;Name=WP_000855342.1;Ontology_term=GO:0006525,GO:0008804;gbkey=CDS;go_function=carbamate kinase activity|0008804||IEA;go_process=arginine metabolic process|0006525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459527.1;locus_tag=CFSAN001082_RS32820;product=carbamate kinase;protein_id=WP_000855342.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	4885	5952	.	-	.	ID=gene-CFSAN001082_RS32825;Name=purK;gbkey=Gene;gene=purK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32825;old_locus_tag=CFSAN001082_08931
NZ_APAH01000173.1	Protein Homology	CDS	4885	5952	.	-	0	ID=cds-WP_023254188.1;Parent=gene-CFSAN001082_RS32825;Dbxref=GenBank:WP_023254188.1;Name=WP_023254188.1;Ontology_term=GO:0006189,GO:0004638,GO:0005524,GO:0046872;gbkey=CDS;gene=purK;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459528.1;locus_tag=CFSAN001082_RS32825;product=5-(carboxyamino)imidazole ribonucleotide synthase;protein_id=WP_023254188.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	5949	6458	.	-	.	ID=gene-CFSAN001082_RS32830;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32830;old_locus_tag=CFSAN001082_08936
NZ_APAH01000173.1	Protein Homology	CDS	5949	6458	.	-	0	ID=cds-WP_000098736.1;Parent=gene-CFSAN001082_RS32830;Dbxref=GenBank:WP_000098736.1;Name=WP_000098736.1;Ontology_term=GO:0006189,GO:0009152,GO:0004638,GO:0009320;gbkey=CDS;gene=purE;go_component=phosphoribosylaminoimidazole carboxylase complex|0009320||IEA;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459529.1;locus_tag=CFSAN001082_RS32830;product=5-(carboxyamino)imidazole ribonucleotide mutase;protein_id=WP_000098736.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	6576	7298	.	-	.	ID=gene-CFSAN001082_RS32835;Name=lpxH;gbkey=Gene;gene=lpxH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32835;old_locus_tag=CFSAN001082_08941
NZ_APAH01000173.1	Protein Homology	CDS	6576	7298	.	-	0	ID=cds-WP_023254189.1;Parent=gene-CFSAN001082_RS32835;Dbxref=GenBank:WP_023254189.1;Name=WP_023254189.1;Ontology_term=GO:0009245,GO:0008758,GO:0016462,GO:0005737;gbkey=CDS;gene=lpxH;go_component=cytoplasm|0005737||IEA;go_function=UDP-2%2C3-diacylglucosamine hydrolase activity|0008758||IEA,pyrophosphatase activity|0016462||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459530.1;locus_tag=CFSAN001082_RS32835;product=UDP-2%2C3-diacylglucosamine diphosphatase;protein_id=WP_023254189.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	7301	7795	.	-	.	ID=gene-CFSAN001082_RS32840;Name=ppiB;gbkey=Gene;gene=ppiB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32840;old_locus_tag=CFSAN001082_08946
NZ_APAH01000173.1	Protein Homology	CDS	7301	7795	.	-	0	ID=cds-WP_000255991.1;Parent=gene-CFSAN001082_RS32840;Dbxref=GenBank:WP_000255991.1;Name=WP_000255991.1;gbkey=CDS;gene=ppiB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465360.1;locus_tag=CFSAN001082_RS32840;product=peptidylprolyl isomerase B;protein_id=WP_000255991.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	7968	9353	.	+	.	ID=gene-CFSAN001082_RS32845;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32845;old_locus_tag=CFSAN001082_08951
NZ_APAH01000173.1	Protein Homology	CDS	7968	9353	.	+	0	ID=cds-WP_000912377.1;Parent=gene-CFSAN001082_RS32845;Dbxref=GenBank:WP_000912377.1;Name=WP_000912377.1;Ontology_term=GO:0006423,GO:0004817,GO:0005524,GO:0005737;gbkey=CDS;gene=cysS;go_component=cytoplasm|0005737||IEA;go_function=cysteine-tRNA ligase activity|0004817||IEA,ATP binding|0005524||IEA;go_process=cysteinyl-tRNA aminoacylation|0006423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125243.1;locus_tag=CFSAN001082_RS32845;product=cysteine--tRNA ligase;protein_id=WP_000912377.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	9444	9992	.	-	.	ID=gene-CFSAN001082_RS32850;Name=CFSAN001082_RS32850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32850;old_locus_tag=CFSAN001082_08956
NZ_APAH01000173.1	Protein Homology	CDS	9444	9992	.	-	0	ID=cds-WP_023254190.1;Parent=gene-CFSAN001082_RS32850;Dbxref=GenBank:WP_023254190.1;Name=WP_023254190.1;Ontology_term=GO:0016787,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001728132.1;locus_tag=CFSAN001082_RS32850;product=metal-dependent hydrolase;protein_id=WP_023254190.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	10120	10332	.	-	.	ID=gene-CFSAN001082_RS32855;Name=ybcJ;gbkey=Gene;gene=ybcJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32855;old_locus_tag=CFSAN001082_08961
NZ_APAH01000173.1	Protein Homology	CDS	10120	10332	.	-	0	ID=cds-WP_000190278.1;Parent=gene-CFSAN001082_RS32855;Dbxref=GenBank:WP_000190278.1;Name=WP_000190278.1;gbkey=CDS;gene=ybcJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459536.1;locus_tag=CFSAN001082_RS32855;product=ribosome-associated protein YbcJ;protein_id=WP_000190278.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	10334	11200	.	-	.	ID=gene-CFSAN001082_RS32860;Name=folD;gbkey=Gene;gene=folD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32860;old_locus_tag=CFSAN001082_08966
NZ_APAH01000173.1	Protein Homology	CDS	10334	11200	.	-	0	ID=cds-WP_000729165.1;Parent=gene-CFSAN001082_RS32860;Dbxref=GenBank:WP_000729165.1;Name=WP_000729165.1;Ontology_term=GO:0004488;gbkey=CDS;gene=folD;go_function=methylenetetrahydrofolate dehydrogenase (NADP+) activity|0004488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459537.1;locus_tag=CFSAN001082_RS32860;product=bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD;protein_id=WP_000729165.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	11747	12304	.	+	.	ID=gene-CFSAN001082_RS32865;Name=fimA;gbkey=Gene;gene=fimA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32865;old_locus_tag=CFSAN001082_08971
NZ_APAH01000173.1	Protein Homology	CDS	11747	12304	.	+	0	ID=cds-WP_000681026.1;Parent=gene-CFSAN001082_RS32865;Dbxref=GenBank:WP_000681026.1;Name=WP_000681026.1;gbkey=CDS;gene=fimA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459538.3;locus_tag=CFSAN001082_RS32865;product=type 1 fimbrial protein subunit FimA;protein_id=WP_000681026.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	12379	12912	.	+	.	ID=gene-CFSAN001082_RS32870;Name=fimI;gbkey=Gene;gene=fimI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32870;old_locus_tag=CFSAN001082_08976
NZ_APAH01000173.1	Protein Homology	CDS	12379	12912	.	+	0	ID=cds-WP_023254191.1;Parent=gene-CFSAN001082_RS32870;Dbxref=GenBank:WP_023254191.1;Name=WP_023254191.1;gbkey=CDS;gene=fimI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459539.1;locus_tag=CFSAN001082_RS32870;product=type 1 fimbrial protein subunit FimI;protein_id=WP_023254191.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	12956	13648	.	+	.	ID=gene-CFSAN001082_RS32875;Name=fimC;gbkey=Gene;gene=fimC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32875;old_locus_tag=CFSAN001082_08981
NZ_APAH01000173.1	Protein Homology	CDS	12956	13648	.	+	0	ID=cds-WP_001519112.1;Parent=gene-CFSAN001082_RS32875;Dbxref=GenBank:WP_001519112.1;Name=WP_001519112.1;gbkey=CDS;gene=fimC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459540.1;locus_tag=CFSAN001082_RS32875;product=type 1 fimbria chaperone FimC;protein_id=WP_001519112.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	13679	16291	.	+	.	ID=gene-CFSAN001082_RS32880;Name=CFSAN001082_RS32880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32880;old_locus_tag=CFSAN001082_08986
NZ_APAH01000173.1	Protein Homology	CDS	13679	16291	.	+	0	ID=cds-WP_023254192.1;Parent=gene-CFSAN001082_RS32880;Dbxref=GenBank:WP_023254192.1;Name=WP_023254192.1;Ontology_term=GO:0009297,GO:0005515,GO:0015473,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA,fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459541.1;locus_tag=CFSAN001082_RS32880;product=fimbrial biogenesis usher protein;protein_id=WP_023254192.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	16306	17313	.	+	.	ID=gene-CFSAN001082_RS32885;Name=fimH;gbkey=Gene;gene=fimH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32885;old_locus_tag=CFSAN001082_08991
NZ_APAH01000173.1	Protein Homology	CDS	16306	17313	.	+	0	ID=cds-WP_000708654.1;Parent=gene-CFSAN001082_RS32885;Dbxref=GenBank:WP_000708654.1;Name=WP_000708654.1;Ontology_term=GO:0007155;gbkey=CDS;gene=fimH;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459542.1;locus_tag=CFSAN001082_RS32885;product=type 1 fimbria D-mannose specific adhesin FimH;protein_id=WP_000708654.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	17323	17841	.	+	.	ID=gene-CFSAN001082_RS32890;Name=sfmF;gbkey=Gene;gene=sfmF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32890;old_locus_tag=CFSAN001082_08996
NZ_APAH01000173.1	Protein Homology	CDS	17323	17841	.	+	0	ID=cds-WP_000577507.1;Parent=gene-CFSAN001082_RS32890;Dbxref=GenBank:WP_000577507.1;Name=WP_000577507.1;gbkey=CDS;gene=sfmF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459543.1;locus_tag=CFSAN001082_RS32890;product=fimbria assembly protein;protein_id=WP_000577507.1;transl_table=11
NZ_APAH01000173.1	RefSeq	gene	17887	18519	.	-	.	ID=gene-CFSAN001082_RS32895;Name=fimZ;gbkey=Gene;gene=fimZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32895;old_locus_tag=CFSAN001082_09001
NZ_APAH01000173.1	Protein Homology	CDS	17887	18519	.	-	0	ID=cds-WP_000801273.1;Parent=gene-CFSAN001082_RS32895;Dbxref=GenBank:WP_000801273.1;Name=WP_000801273.1;gbkey=CDS;gene=fimZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459544.1;locus_tag=CFSAN001082_RS32895;product=fimbria biosynthesis transcriptional regulator FimZ;protein_id=WP_000801273.1;transl_table=11
##sequence-region NZ_APAH01000174.1 1 1852
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000174.1	RefSeq	region	1	1852	.	+	.	ID=NZ_APAH01000174.1:1..1852;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000174.1	RefSeq	gene	1	1619	.	-	.	ID=gene-CFSAN001082_RS32900;Name=oppA;gbkey=Gene;gene=oppA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32900;old_locus_tag=CFSAN001082_09006;partial=true;start_range=.,1
NZ_APAH01000174.1	Protein Homology	CDS	1	1619	.	-	0	ID=cds-WP_023254193.1;Parent=gene-CFSAN001082_RS32900;Dbxref=GenBank:WP_023254193.1;Name=WP_023254193.1;Ontology_term=GO:0055085,GO:0043190;gbkey=CDS;gene=oppA;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001672805.1;locus_tag=CFSAN001082_RS32900;partial=true;product=oligopeptide ABC transporter substrate-binding protein OppA;protein_id=WP_023254193.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000175.1 1 577
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000175.1	RefSeq	region	1	577	.	+	.	ID=NZ_APAH01000175.1:1..577;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000175.1	RefSeq	gene	116	571	.	-	.	ID=gene-CFSAN001082_RS32905;Name=CFSAN001082_RS32905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32905;old_locus_tag=CFSAN001082_09011
NZ_APAH01000175.1	Protein Homology	CDS	116	571	.	-	0	ID=cds-WP_000487337.1;Parent=gene-CFSAN001082_RS32905;Dbxref=GenBank:WP_000487337.1;Name=WP_000487337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000487332.1;locus_tag=CFSAN001082_RS32905;product=hypothetical protein;protein_id=WP_000487337.1;transl_table=11
##sequence-region NZ_APAH01000176.1 1 1144
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000176.1	RefSeq	region	1	1144	.	+	.	ID=NZ_APAH01000176.1:1..1144;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000176.1	RefSeq	gene	4	279	.	-	.	ID=gene-CFSAN001082_RS32910;Name=CFSAN001082_RS32910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32910;old_locus_tag=CFSAN001082_09016
NZ_APAH01000176.1	GeneMarkS-2+	CDS	4	279	.	-	0	ID=cds-WP_023203421.1;Parent=gene-CFSAN001082_RS32910;Dbxref=GenBank:WP_023203421.1;Name=WP_023203421.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS32910;product=hypothetical protein;protein_id=WP_023203421.1;transl_table=11
NZ_APAH01000176.1	RefSeq	gene	816	1144	.	-	.	ID=gene-CFSAN001082_RS48815;Name=CFSAN001082_RS48815;end_range=1144,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48815;partial=true
NZ_APAH01000176.1	Protein Homology	CDS	816	1144	.	-	2	ID=cds-WP_237747778.1;Parent=gene-CFSAN001082_RS48815;Dbxref=GenBank:WP_237747778.1;Name=WP_237747778.1;end_range=1144,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001695455.1;locus_tag=CFSAN001082_RS48815;partial=true;product=hypothetical protein;protein_id=WP_237747778.1;transl_table=11
##sequence-region NZ_APAH01000177.1 1 245
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000177.1	RefSeq	region	1	245	.	+	.	ID=NZ_APAH01000177.1:1..245;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000177.1	RefSeq	pseudogene	38	245	.	+	.	ID=gene-CFSAN001082_RS46880;Name=CFSAN001082_RS46880;end_range=245,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46880;old_locus_tag=CFSAN001082_09021;partial=true;pseudo=true
NZ_APAH01000177.1	Protein Homology	CDS	38	245	.	+	0	ID=cds-CFSAN001082_RS46880;Parent=gene-CFSAN001082_RS46880;Note=similar to ElaD%3B specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins%3B SseL in Salmonella is required for macrophage killing and virulence%2C and it is secreted by the salmonella pathogenicity island 2 type III secretion system%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=245,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001017721.1;locus_tag=CFSAN001082_RS46880;partial=true;product=type III secretion system effector deubiquitinase SseL;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000178.1 1 1010
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000178.1	RefSeq	region	1	1010	.	+	.	ID=NZ_APAH01000178.1:1..1010;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000178.1	RefSeq	gene	180	1010	.	+	.	ID=gene-CFSAN001082_RS0123295;Name=sifB;end_range=1010,.;gbkey=Gene;gene=sifB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123295;partial=true
NZ_APAH01000178.1	Protein Homology	CDS	180	1010	.	+	0	ID=cds-WP_024150269.1;Parent=gene-CFSAN001082_RS0123295;Dbxref=GenBank:WP_024150269.1;Name=WP_024150269.1;end_range=1010,.;gbkey=CDS;gene=sifB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460561.1;locus_tag=CFSAN001082_RS0123295;partial=true;product=SPI-2 type III secretion system effector SifB;protein_id=WP_024150269.1;transl_table=11
##sequence-region NZ_APAH01000179.1 1 9716
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000179.1	RefSeq	region	1	9716	.	+	.	ID=NZ_APAH01000179.1:1..9716;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000179.1	RefSeq	gene	1	946	.	-	.	ID=gene-CFSAN001082_RS32915;Name=CFSAN001082_RS32915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32915;old_locus_tag=CFSAN001082_09031;partial=true;start_range=.,1
NZ_APAH01000179.1	Protein Homology	CDS	1	946	.	-	0	ID=cds-WP_023254197.1;Parent=gene-CFSAN001082_RS32915;Dbxref=GenBank:WP_023254197.1;Name=WP_023254197.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020883197.1;locus_tag=CFSAN001082_RS32915;partial=true;product=ATP-binding cassette domain-containing protein;protein_id=WP_023254197.1;start_range=.,1;transl_table=11
NZ_APAH01000179.1	RefSeq	gene	1080	2078	.	-	.	ID=gene-CFSAN001082_RS32920;Name=mglB;gbkey=Gene;gene=mglB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32920;old_locus_tag=CFSAN001082_09036
NZ_APAH01000179.1	Protein Homology	CDS	1080	2078	.	-	0	ID=cds-WP_023254198.1;Parent=gene-CFSAN001082_RS32920;Dbxref=GenBank:WP_023254198.1;Name=WP_023254198.1;Ontology_term=GO:0030246;gbkey=CDS;gene=mglB;go_function=carbohydrate binding|0030246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461135.1;locus_tag=CFSAN001082_RS32920;product=galactose/glucose ABC transporter substrate-binding protein MglB;protein_id=WP_023254198.1;transl_table=11
NZ_APAH01000179.1	RefSeq	gene	2577	3599	.	-	.	ID=gene-CFSAN001082_RS32925;Name=galS;gbkey=Gene;gene=galS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32925;old_locus_tag=CFSAN001082_09041
NZ_APAH01000179.1	Protein Homology	CDS	2577	3599	.	-	0	ID=cds-WP_000628631.1;Parent=gene-CFSAN001082_RS32925;Dbxref=GenBank:WP_000628631.1;Name=WP_000628631.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=galS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461136.1;locus_tag=CFSAN001082_RS32925;product=HTH-type transcriptional regulator GalS;protein_id=WP_000628631.1;transl_table=11
NZ_APAH01000179.1	RefSeq	gene	3749	4891	.	-	.	ID=gene-CFSAN001082_RS32930;Name=yeiB;gbkey=Gene;gene=yeiB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32930;old_locus_tag=CFSAN001082_09046
NZ_APAH01000179.1	Protein Homology	CDS	3749	4891	.	-	0	ID=cds-WP_001518079.1;Parent=gene-CFSAN001082_RS32930;Dbxref=GenBank:WP_001518079.1;Name=WP_001518079.1;gbkey=CDS;gene=yeiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461137.1;locus_tag=CFSAN001082_RS32930;product=DUF418 domain-containing protein YeiB;protein_id=WP_001518079.1;transl_table=11
NZ_APAH01000179.1	RefSeq	gene	4906	5574	.	-	.	ID=gene-CFSAN001082_RS32935;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32935;old_locus_tag=CFSAN001082_09051
NZ_APAH01000179.1	Protein Homology	CDS	4906	5574	.	-	0	ID=cds-WP_001139611.1;Parent=gene-CFSAN001082_RS32935;Dbxref=GenBank:WP_001139611.1;Name=WP_001139611.1;Ontology_term=GO:0046654,GO:0003934;gbkey=CDS;gene=folE;go_function=GTP cyclohydrolase I activity|0003934||IEA;go_process=tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461138.1;locus_tag=CFSAN001082_RS32935;product=GTP cyclohydrolase I FolE;protein_id=WP_001139611.1;transl_table=11
NZ_APAH01000179.1	RefSeq	gene	5904	6761	.	+	.	ID=gene-CFSAN001082_RS32940;Name=fghA;gbkey=Gene;gene=fghA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32940;old_locus_tag=CFSAN001082_09056
NZ_APAH01000179.1	Protein Homology	CDS	5904	6761	.	+	0	ID=cds-WP_000425488.1;Parent=gene-CFSAN001082_RS32940;Dbxref=GenBank:WP_000425488.1;Name=WP_000425488.1;Ontology_term=GO:0046294,GO:0018738;gbkey=CDS;gene=fghA;go_function=S-formylglutathione hydrolase activity|0018738||IEA;go_process=formaldehyde catabolic process|0046294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461139.2;locus_tag=CFSAN001082_RS32940;product=S-formylglutathione hydrolase;protein_id=WP_000425488.1;transl_table=11
NZ_APAH01000179.1	RefSeq	gene	6750	7139	.	-	.	ID=gene-CFSAN001082_RS32945;Name=CFSAN001082_RS32945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32945;old_locus_tag=CFSAN001082_09061
NZ_APAH01000179.1	Protein Homology	CDS	6750	7139	.	-	0	ID=cds-WP_000876817.1;Parent=gene-CFSAN001082_RS32945;Dbxref=GenBank:WP_000876817.1;Name=WP_000876817.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461140.1;locus_tag=CFSAN001082_RS32945;product=helix-turn-helix domain-containing protein;protein_id=WP_000876817.1;transl_table=11
NZ_APAH01000179.1	RefSeq	gene	7144	8511	.	-	.	ID=gene-CFSAN001082_RS32950;Name=CFSAN001082_RS32950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32950;old_locus_tag=CFSAN001082_09066
NZ_APAH01000179.1	Protein Homology	CDS	7144	8511	.	-	0	ID=cds-WP_023254199.1;Parent=gene-CFSAN001082_RS32950;Dbxref=GenBank:WP_023254199.1;Name=WP_023254199.1;Ontology_term=GO:0006094,GO:0003941;gbkey=CDS;go_function=L-serine ammonia-lyase activity|0003941||IEA;go_process=gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461141.1;locus_tag=CFSAN001082_RS32950;product=L-serine ammonia-lyase;protein_id=WP_023254199.1;transl_table=11
NZ_APAH01000179.1	RefSeq	gene	8728	9615	.	+	.	ID=gene-CFSAN001082_RS32955;Name=serB;gbkey=Gene;gene=serB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32955;old_locus_tag=CFSAN001082_09071
NZ_APAH01000179.1	Protein Homology	CDS	8728	9615	.	+	0	ID=cds-WP_000022914.1;Parent=gene-CFSAN001082_RS32955;Dbxref=GenBank:WP_000022914.1;Name=WP_000022914.1;Ontology_term=GO:0006564,GO:0036424;gbkey=CDS;gene=serB;go_function=L-phosphoserine phosphatase activity|0036424||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461142.1;locus_tag=CFSAN001082_RS32955;product=phosphoserine phosphatase SerB;protein_id=WP_000022914.1;transl_table=11
NZ_APAH01000179.1	RefSeq	gene	9648	9716	.	+	.	ID=gene-CFSAN001082_RS48820;Name=CFSAN001082_RS48820;end_range=9716,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48820;old_locus_tag=CFSAN001082_09076;partial=true
NZ_APAH01000179.1	Protein Homology	CDS	9648	9716	.	+	0	ID=cds-WP_023254200.1;Parent=gene-CFSAN001082_RS48820;Dbxref=GenBank:WP_023254200.1;Name=WP_023254200.1;end_range=9716,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461143.1;locus_tag=CFSAN001082_RS48820;partial=true;product=hypothetical protein;protein_id=WP_023254200.1;transl_table=11
##sequence-region NZ_APAH01000180.1 1 602
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000180.1	RefSeq	region	1	602	.	+	.	ID=NZ_APAH01000180.1:1..602;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000180.1	RefSeq	pseudogene	536	602	.	-	.	ID=gene-CFSAN001082_RS48225;Name=CFSAN001082_RS48225;end_range=602,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48225;partial=true;pseudo=true
NZ_APAH01000180.1	Protein Homology	CDS	536	602	.	-	1	ID=cds-CFSAN001082_RS48225;Parent=gene-CFSAN001082_RS48225;Note=PliC%3B periplasmic lysozyme inhibitor of c-type lysozyme%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=602,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460216.1;locus_tag=CFSAN001082_RS48225;partial=true;product=c-type lysozyme inhibitor;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000181.1 1 1112
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000181.1	RefSeq	region	1	1112	.	+	.	ID=NZ_APAH01000181.1:1..1112;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000181.1	RefSeq	gene	78	935	.	-	.	ID=gene-CFSAN001082_RS32960;Name=CFSAN001082_RS32960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32960;old_locus_tag=CFSAN001082_09081
NZ_APAH01000181.1	Protein Homology	CDS	78	935	.	-	0	ID=cds-WP_010989022.1;Parent=gene-CFSAN001082_RS32960;Dbxref=GenBank:WP_010989022.1;Name=WP_010989022.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460629.1;locus_tag=CFSAN001082_RS32960;product=GyrI-like domain-containing protein;protein_id=WP_010989022.1;transl_table=11
##sequence-region NZ_APAH01000182.1 1 2586
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000182.1	RefSeq	region	1	2586	.	+	.	ID=NZ_APAH01000182.1:1..2586;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000182.1	RefSeq	pseudogene	1	159	.	+	.	ID=gene-CFSAN001082_RS48230;Name=CFSAN001082_RS48230;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48230;old_locus_tag=CFSAN001082_09086;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000182.1	Protein Homology	CDS	1	159	.	+	0	ID=cds-CFSAN001082_RS48230;Parent=gene-CFSAN001082_RS48230;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461745.1;locus_tag=CFSAN001082_RS48230;partial=true;product=DedA family protein;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000182.1	RefSeq	gene	236	1792	.	+	.	ID=gene-CFSAN001082_RS32970;Name=gshA;gbkey=Gene;gene=gshA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32970;old_locus_tag=CFSAN001082_09091
NZ_APAH01000182.1	Protein Homology	CDS	236	1792	.	+	0	ID=cds-WP_000611821.1;Parent=gene-CFSAN001082_RS32970;Dbxref=GenBank:WP_000611821.1;Name=WP_000611821.1;Ontology_term=GO:0006750,GO:0004357;gbkey=CDS;gene=gshA;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461744.1;locus_tag=CFSAN001082_RS32970;product=glutamate--cysteine ligase;protein_id=WP_000611821.1;transl_table=11
NZ_APAH01000182.1	RefSeq	gene	1942	2457	.	+	.	ID=gene-CFSAN001082_RS32975;Name=luxS;gbkey=Gene;gene=luxS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32975;old_locus_tag=CFSAN001082_09096
NZ_APAH01000182.1	Protein Homology	CDS	1942	2457	.	+	0	ID=cds-WP_001130193.1;Parent=gene-CFSAN001082_RS32975;Dbxref=GenBank:WP_001130193.1;Name=WP_001130193.1;gbkey=CDS;gene=luxS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008458247.1;locus_tag=CFSAN001082_RS32975;product=S-ribosylhomocysteine lyase;protein_id=WP_001130193.1;transl_table=11
##sequence-region NZ_APAH01000183.1 1 26900
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000183.1	RefSeq	region	1	26900	.	+	.	ID=NZ_APAH01000183.1:1..26900;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000183.1	RefSeq	gene	1	78	.	+	.	ID=gene-CFSAN001082_RS48825;Name=CFSAN001082_RS48825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48825;partial=true;start_range=.,1
NZ_APAH01000183.1	Protein Homology	CDS	1	78	.	+	0	ID=cds-WP_237747779.1;Parent=gene-CFSAN001082_RS48825;Dbxref=GenBank:WP_237747779.1;Name=WP_237747779.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459860.1;locus_tag=CFSAN001082_RS48825;partial=true;product=hypothetical protein;protein_id=WP_237747779.1;start_range=.,1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	108	428	.	+	.	ID=gene-CFSAN001082_RS32980;Name=CFSAN001082_RS32980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32980;old_locus_tag=CFSAN001082_09101
NZ_APAH01000183.1	Protein Homology	CDS	108	428	.	+	0	ID=cds-WP_000655399.1;Parent=gene-CFSAN001082_RS32980;Dbxref=GenBank:WP_000655399.1;Name=WP_000655399.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459861.1;locus_tag=CFSAN001082_RS32980;product=PTS sugar transporter subunit IIB;protein_id=WP_000655399.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	438	1925	.	+	.	ID=gene-CFSAN001082_RS32985;Name=CFSAN001082_RS32985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32985;old_locus_tag=CFSAN001082_09106
NZ_APAH01000183.1	Protein Homology	CDS	438	1925	.	+	0	ID=cds-WP_023228841.1;Parent=gene-CFSAN001082_RS32985;Dbxref=GenBank:WP_023228841.1;Name=WP_023228841.1;Ontology_term=GO:0008484,GO:0046872;gbkey=CDS;go_function=sulfuric ester hydrolase activity|0008484||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459862.1;locus_tag=CFSAN001082_RS32985;product=sulfatase;protein_id=WP_023228841.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	2145	2876	.	-	.	ID=gene-CFSAN001082_RS32990;Name=artJ;gbkey=Gene;gene=artJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32990;old_locus_tag=CFSAN001082_09111
NZ_APAH01000183.1	Protein Homology	CDS	2145	2876	.	-	0	ID=cds-WP_023254202.1;Parent=gene-CFSAN001082_RS32990;Dbxref=GenBank:WP_023254202.1;Name=WP_023254202.1;gbkey=CDS;gene=artJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459863.1;locus_tag=CFSAN001082_RS32990;product=arginine ABC transporter substrate-binding protein ArtJ;protein_id=WP_023254202.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	3113	3781	.	-	.	ID=gene-CFSAN001082_RS32995;Name=artM;gbkey=Gene;gene=artM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS32995;old_locus_tag=CFSAN001082_09116
NZ_APAH01000183.1	Protein Homology	CDS	3113	3781	.	-	0	ID=cds-WP_000895396.1;Parent=gene-CFSAN001082_RS32995;Dbxref=GenBank:WP_000895396.1;Name=WP_000895396.1;Ontology_term=GO:0071705,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=artM;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=nitrogen compound transport|0071705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459864.1;locus_tag=CFSAN001082_RS32995;product=arginine ABC transporter permease ArtM;protein_id=WP_000895396.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	3781	4497	.	-	.	ID=gene-CFSAN001082_RS33000;Name=artQ;gbkey=Gene;gene=artQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33000;old_locus_tag=CFSAN001082_09121
NZ_APAH01000183.1	Protein Homology	CDS	3781	4497	.	-	0	ID=cds-WP_001001677.1;Parent=gene-CFSAN001082_RS33000;Dbxref=GenBank:WP_001001677.1;Name=WP_001001677.1;Ontology_term=GO:0055085,GO:0071705,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=artQ;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA,nitrogen compound transport|0071705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459865.1;locus_tag=CFSAN001082_RS33000;product=arginine ABC transporter permease ArtQ;protein_id=WP_001001677.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	4504	5235	.	-	.	ID=gene-CFSAN001082_RS33005;Name=artI;gbkey=Gene;gene=artI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33005;old_locus_tag=CFSAN001082_09126
NZ_APAH01000183.1	Protein Homology	CDS	4504	5235	.	-	0	ID=cds-WP_000756586.1;Parent=gene-CFSAN001082_RS33005;Dbxref=GenBank:WP_000756586.1;Name=WP_000756586.1;Ontology_term=GO:0015424,GO:0043190;gbkey=CDS;gene=artI;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type amino acid transporter activity|0015424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459866.1;locus_tag=CFSAN001082_RS33005;product=arginine ABC transporter substrate-binding protein ArtI;protein_id=WP_000756586.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	5253	5981	.	-	.	ID=gene-CFSAN001082_RS33010;Name=artP;gbkey=Gene;gene=artP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33010;old_locus_tag=CFSAN001082_09131
NZ_APAH01000183.1	Protein Homology	CDS	5253	5981	.	-	0	ID=cds-WP_000027186.1;Parent=gene-CFSAN001082_RS33010;Dbxref=GenBank:WP_000027186.1;Name=WP_000027186.1;Ontology_term=GO:0003333,GO:0005524,GO:0015424,GO:0043190;gbkey=CDS;gene=artP;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742668.1;locus_tag=CFSAN001082_RS33010;product=arginine ABC transporter ATP-binding protein ArtP;protein_id=WP_000027186.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	6211	6726	.	-	.	ID=gene-CFSAN001082_RS33015;Name=CFSAN001082_RS33015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33015;old_locus_tag=CFSAN001082_09136
NZ_APAH01000183.1	Protein Homology	CDS	6211	6726	.	-	0	ID=cds-WP_001270724.1;Parent=gene-CFSAN001082_RS33015;Dbxref=GenBank:WP_001270724.1;Name=WP_001270724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459868.1;locus_tag=CFSAN001082_RS33015;product=lipoprotein;protein_id=WP_001270724.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	6854	7177	.	+	.	ID=gene-CFSAN001082_RS33020;Name=CFSAN001082_RS33020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33020;old_locus_tag=CFSAN001082_09141
NZ_APAH01000183.1	Protein Homology	CDS	6854	7177	.	+	0	ID=cds-WP_001160725.1;Parent=gene-CFSAN001082_RS33020;Dbxref=GenBank:WP_001160725.1;Name=WP_001160725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459907.1;locus_tag=CFSAN001082_RS33020;product=heavy metal-binding domain-containing protein;protein_id=WP_001160725.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	7174	8004	.	+	.	ID=gene-CFSAN001082_RS33025;Name=CFSAN001082_RS33025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33025;old_locus_tag=CFSAN001082_09146
NZ_APAH01000183.1	Protein Homology	CDS	7174	8004	.	+	0	ID=cds-WP_023203679.1;Parent=gene-CFSAN001082_RS33025;Dbxref=GenBank:WP_023203679.1;Name=WP_023203679.1;Ontology_term=GO:0071555,GO:0008270,GO:0008745,GO:0042834,GO:0046872;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA,peptidoglycan binding|0042834||IEA,metal ion binding|0046872||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459908.1;locus_tag=CFSAN001082_RS33025;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_023203679.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	8001	9014	.	-	.	ID=gene-CFSAN001082_RS33030;Name=CFSAN001082_RS33030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33030;old_locus_tag=CFSAN001082_09151
NZ_APAH01000183.1	Protein Homology	CDS	8001	9014	.	-	0	ID=cds-WP_000866903.1;Parent=gene-CFSAN001082_RS33030;Dbxref=GenBank:WP_000866903.1;Name=WP_000866903.1;Ontology_term=GO:0016491,GO:0051287,GO:0070403;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459909.1;locus_tag=CFSAN001082_RS33030;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_000866903.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	9110	10543	.	-	.	ID=gene-CFSAN001082_RS33035;Name=CFSAN001082_RS33035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33035;old_locus_tag=CFSAN001082_09156
NZ_APAH01000183.1	Protein Homology	CDS	9110	10543	.	-	0	ID=cds-WP_023254203.1;Parent=gene-CFSAN001082_RS33035;Dbxref=GenBank:WP_023254203.1;Name=WP_023254203.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459910.1;locus_tag=CFSAN001082_RS33035;product=SDR family oxidoreductase;protein_id=WP_023254203.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	10554	11555	.	-	.	ID=gene-CFSAN001082_RS33040;Name=ltaE;gbkey=Gene;gene=ltaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33040;old_locus_tag=CFSAN001082_09161
NZ_APAH01000183.1	Protein Homology	CDS	10554	11555	.	-	0	ID=cds-WP_000566346.1;Parent=gene-CFSAN001082_RS33040;Dbxref=GenBank:WP_000566346.1;Name=WP_000566346.1;Ontology_term=GO:0006520,GO:0016829;gbkey=CDS;gene=ltaE;go_function=lyase activity|0016829||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459911.1;locus_tag=CFSAN001082_RS33040;product=low-specificity L-threonine aldolase;protein_id=WP_000566346.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	11594	13312	.	-	.	ID=gene-CFSAN001082_RS33045;Name=poxB;gbkey=Gene;gene=poxB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33045;old_locus_tag=CFSAN001082_09166
NZ_APAH01000183.1	Protein Homology	CDS	11594	13312	.	-	0	ID=cds-WP_023254204.1;Parent=gene-CFSAN001082_RS33045;Dbxref=GenBank:WP_023254204.1;Name=WP_023254204.1;Ontology_term=GO:0006090,GO:0000287,GO:0030976,GO:0052737;gbkey=CDS;gene=poxB;go_function=magnesium ion binding|0000287||IEA,thiamine pyrophosphate binding|0030976||IEA,pyruvate dehydrogenase (quinone) activity|0052737||IEA;go_process=pyruvate metabolic process|0006090||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459912.1;locus_tag=CFSAN001082_RS33045;product=ubiquinone-dependent pyruvate dehydrogenase;protein_id=WP_023254204.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	13470	14438	.	-	.	ID=gene-CFSAN001082_RS33050;Name=hcr;gbkey=Gene;gene=hcr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33050;old_locus_tag=CFSAN001082_09171
NZ_APAH01000183.1	Protein Homology	CDS	13470	14438	.	-	0	ID=cds-WP_001538209.1;Parent=gene-CFSAN001082_RS33050;Dbxref=GenBank:WP_001538209.1;Name=WP_001538209.1;Ontology_term=GO:0016491,GO:0051536;gbkey=CDS;gene=hcr;go_function=oxidoreductase activity|0016491||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308985.1;locus_tag=CFSAN001082_RS33050;product=NADH oxidoreductase;protein_id=WP_001538209.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	14450	16102	.	-	.	ID=gene-CFSAN001082_RS33055;Name=hcp;gbkey=Gene;gene=hcp;gene_biotype=protein_coding;gene_synonym=priS;locus_tag=CFSAN001082_RS33055;old_locus_tag=CFSAN001082_09176
NZ_APAH01000183.1	Protein Homology	CDS	14450	16102	.	-	0	ID=cds-WP_023254205.1;Parent=gene-CFSAN001082_RS33055;Dbxref=GenBank:WP_023254205.1;Name=WP_023254205.1;Ontology_term=GO:0016661,GO:0051536;gbkey=CDS;gene=hcp;go_function=oxidoreductase activity%2C acting on other nitrogenous compounds as donors|0016661||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122080.1;locus_tag=CFSAN001082_RS33055;product=hydroxylamine reductase;protein_id=WP_023254205.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	16246	17145	.	-	.	ID=gene-CFSAN001082_RS33060;Name=CFSAN001082_RS33060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33060;old_locus_tag=CFSAN001082_09181
NZ_APAH01000183.1	Protein Homology	CDS	16246	17145	.	-	0	ID=cds-WP_023254206.1;Parent=gene-CFSAN001082_RS33060;Dbxref=GenBank:WP_023254206.1;Name=WP_023254206.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459915.1;locus_tag=CFSAN001082_RS33060;product=lysine exporter LysO family protein;protein_id=WP_023254206.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	17347	19005	.	+	.	ID=gene-CFSAN001082_RS33065;Name=CFSAN001082_RS33065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33065;old_locus_tag=CFSAN001082_09186
NZ_APAH01000183.1	Protein Homology	CDS	17347	19005	.	+	0	ID=cds-WP_000599770.1;Parent=gene-CFSAN001082_RS33065;Dbxref=GenBank:WP_000599770.1;Name=WP_000599770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459916.2;locus_tag=CFSAN001082_RS33065;product=ATP-dependent endonuclease;protein_id=WP_000599770.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	19002	19952	.	-	.	ID=gene-CFSAN001082_RS33070;Name=CFSAN001082_RS33070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33070;old_locus_tag=CFSAN001082_09191
NZ_APAH01000183.1	Protein Homology	CDS	19002	19952	.	-	0	ID=cds-WP_001617140.1;Parent=gene-CFSAN001082_RS33070;Dbxref=GenBank:WP_001617140.1;Name=WP_001617140.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001519667.1;locus_tag=CFSAN001082_RS33070;product=VirK/YbjX family protein;protein_id=WP_001617140.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	20098	21216	.	+	.	ID=gene-CFSAN001082_RS33075;Name=macA;gbkey=Gene;gene=macA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33075;old_locus_tag=CFSAN001082_09196
NZ_APAH01000183.1	Protein Homology	CDS	20098	21216	.	+	0	ID=cds-WP_001201760.1;Parent=gene-CFSAN001082_RS33075;Dbxref=GenBank:WP_001201760.1;Name=WP_001201760.1;Ontology_term=GO:1990961,GO:0022857,GO:0019898,GO:1990195;gbkey=CDS;gene=macA;go_component=extrinsic component of membrane|0019898||IEA,macrolide transmembrane transporter complex|1990195||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459918.1;locus_tag=CFSAN001082_RS33075;product=macrolide transporter subunit MacA;protein_id=WP_001201760.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	21213	23159	.	+	.	ID=gene-CFSAN001082_RS33080;Name=macB;gbkey=Gene;gene=macB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33080;old_locus_tag=CFSAN001082_09201
NZ_APAH01000183.1	Protein Homology	CDS	21213	23159	.	+	0	ID=cds-WP_000125894.1;Parent=gene-CFSAN001082_RS33080;Dbxref=GenBank:WP_000125894.1;Name=WP_000125894.1;Ontology_term=GO:0005524,GO:0022857,GO:1990195;gbkey=CDS;gene=macB;go_component=macrolide transmembrane transporter complex|1990195||IEA;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459919.1;locus_tag=CFSAN001082_RS33080;product=macrolide ABC transporter ATP-binding protein/permease MacB;protein_id=WP_000125894.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	23289	23510	.	-	.	ID=gene-CFSAN001082_RS33085;Name=cspD;gbkey=Gene;gene=cspD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33085;old_locus_tag=CFSAN001082_09206
NZ_APAH01000183.1	Protein Homology	CDS	23289	23510	.	-	0	ID=cds-WP_000447499.1;Parent=gene-CFSAN001082_RS33085;Dbxref=GenBank:WP_000447499.1;Name=WP_000447499.1;gbkey=CDS;gene=cspD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459920.1;locus_tag=CFSAN001082_RS33085;product=cold shock-like protein CspD;protein_id=WP_000447499.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	23661	23738	.	+	.	ID=gene-CFSAN001082_RS48830;Name=CFSAN001082_RS48830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48830
NZ_APAH01000183.1	Protein Homology	CDS	23661	23738	.	+	0	ID=cds-WP_212742690.1;Parent=gene-CFSAN001082_RS48830;Dbxref=GenBank:WP_212742690.1;Name=WP_212742690.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051179.1;locus_tag=CFSAN001082_RS48830;product=hypothetical protein;protein_id=WP_212742690.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	23834	24154	.	+	.	ID=gene-CFSAN001082_RS33090;Name=clpS;gbkey=Gene;gene=clpS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33090;old_locus_tag=CFSAN001082_09211
NZ_APAH01000183.1	Protein Homology	CDS	23834	24154	.	+	0	ID=cds-WP_000520789.1;Parent=gene-CFSAN001082_RS33090;Dbxref=GenBank:WP_000520789.1;Name=WP_000520789.1;Ontology_term=GO:0006508;gbkey=CDS;gene=clpS;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128368.1;locus_tag=CFSAN001082_RS33090;product=ATP-dependent Clp protease adapter ClpS;protein_id=WP_000520789.1;transl_table=11
NZ_APAH01000183.1	RefSeq	gene	24185	26461	.	+	.	ID=gene-CFSAN001082_RS33095;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33095;old_locus_tag=CFSAN001082_09216
NZ_APAH01000183.1	Protein Homology	CDS	24185	26461	.	+	0	ID=cds-WP_000934064.1;Parent=gene-CFSAN001082_RS33095;Dbxref=GenBank:WP_000934064.1;Name=WP_000934064.1;Ontology_term=GO:0043335,GO:0005524,GO:0016887;gbkey=CDS;gene=clpA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein unfolding|0043335||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459922.1;locus_tag=CFSAN001082_RS33095;product=ATP-dependent Clp protease ATP-binding subunit ClpA;protein_id=WP_000934064.1;transl_table=11
##sequence-region NZ_APAH01000184.1 1 13009
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000184.1	RefSeq	region	1	13009	.	+	.	ID=NZ_APAH01000184.1:1..13009;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000184.1	RefSeq	pseudogene	535	675	.	-	.	ID=gene-CFSAN001082_RS0123325;Name=CFSAN001082_RS0123325;end_range=675,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0123325;partial=true;pseudo=true
NZ_APAH01000184.1	Protein Homology	CDS	535	675	.	-	0	ID=cds-CFSAN001082_RS0123325;Parent=gene-CFSAN001082_RS0123325;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=675,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308261.1;locus_tag=CFSAN001082_RS0123325;partial=true;product=type VI secretion system tube protein Hcp;pseudo=true;transl_table=11
NZ_APAH01000184.1	RefSeq	pseudogene	712	1369	.	-	.	ID=gene-CFSAN001082_RS48835;Name=CFSAN001082_RS48835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48835;partial=true;pseudo=true;start_range=.,712
NZ_APAH01000184.1	Protein Homology	CDS	712	1369	.	-	0	ID=cds-CFSAN001082_RS48835;Parent=gene-CFSAN001082_RS48835;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001219011.1;locus_tag=CFSAN001082_RS48835;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;start_range=.,712;transl_table=11
NZ_APAH01000184.1	RefSeq	gene	1820	5485	.	+	.	ID=gene-CFSAN001082_RS33105;Name=CFSAN001082_RS33105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33105;old_locus_tag=CFSAN001082_09236
NZ_APAH01000184.1	Protein Homology	CDS	1820	5485	.	+	0	ID=cds-WP_024150271.1;Parent=gene-CFSAN001082_RS33105;Dbxref=GenBank:WP_024150271.1;Name=WP_024150271.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001135884.1;locus_tag=CFSAN001082_RS33105;product=ATP-binding protein;protein_id=WP_024150271.1;transl_table=11
NZ_APAH01000184.1	RefSeq	gene	5485	6108	.	+	.	ID=gene-CFSAN001082_RS33110;Name=CFSAN001082_RS33110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33110;old_locus_tag=CFSAN001082_09241
NZ_APAH01000184.1	Protein Homology	CDS	5485	6108	.	+	0	ID=cds-WP_023254211.1;Parent=gene-CFSAN001082_RS33110;Dbxref=GenBank:WP_023254211.1;Name=WP_023254211.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123849.1;locus_tag=CFSAN001082_RS33110;product=condensin complex protein MksE;protein_id=WP_023254211.1;transl_table=11
NZ_APAH01000184.1	RefSeq	gene	6108	7346	.	+	.	ID=gene-CFSAN001082_RS33115;Name=CFSAN001082_RS33115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33115;old_locus_tag=CFSAN001082_09246
NZ_APAH01000184.1	Protein Homology	CDS	6108	7346	.	+	0	ID=cds-WP_023254212.1;Parent=gene-CFSAN001082_RS33115;Dbxref=GenBank:WP_023254212.1;Name=WP_023254212.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000046505.1;locus_tag=CFSAN001082_RS33115;product=hypothetical protein;protein_id=WP_023254212.1;transl_table=11
NZ_APAH01000184.1	RefSeq	gene	7343	8233	.	+	.	ID=gene-CFSAN001082_RS33120;Name=CFSAN001082_RS33120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33120;old_locus_tag=CFSAN001082_09251
NZ_APAH01000184.1	Protein Homology	CDS	7343	8233	.	+	0	ID=cds-WP_023254213.1;Parent=gene-CFSAN001082_RS33120;Dbxref=GenBank:WP_023254213.1;Name=WP_023254213.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123852.1;locus_tag=CFSAN001082_RS33120;product=DUF7281 domain-containing protein;protein_id=WP_023254213.1;transl_table=11
NZ_APAH01000184.1	RefSeq	gene	8685	9758	.	-	.	ID=gene-CFSAN001082_RS33125;Name=CFSAN001082_RS33125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33125;old_locus_tag=CFSAN001082_09256
NZ_APAH01000184.1	Protein Homology	CDS	8685	9758	.	-	0	ID=cds-WP_023254214.1;Parent=gene-CFSAN001082_RS33125;Dbxref=GenBank:WP_023254214.1;Name=WP_023254214.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001313296.1;locus_tag=CFSAN001082_RS33125;product=nucleotidyl transferase AbiEii/AbiGii toxin family protein;protein_id=WP_023254214.1;transl_table=11
NZ_APAH01000184.1	RefSeq	gene	9758	10375	.	-	.	ID=gene-CFSAN001082_RS33130;Name=CFSAN001082_RS33130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33130;old_locus_tag=CFSAN001082_09261
NZ_APAH01000184.1	Protein Homology	CDS	9758	10375	.	-	0	ID=cds-WP_023202708.1;Parent=gene-CFSAN001082_RS33130;Dbxref=GenBank:WP_023202708.1;Name=WP_023202708.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123862.1;locus_tag=CFSAN001082_RS33130;product=DUF6088 family protein;protein_id=WP_023202708.1;transl_table=11
NZ_APAH01000184.1	RefSeq	gene	10574	11032	.	+	.	ID=gene-CFSAN001082_RS33135;Name=CFSAN001082_RS33135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33135;old_locus_tag=CFSAN001082_09266
NZ_APAH01000184.1	Protein Homology	CDS	10574	11032	.	+	0	ID=cds-WP_023254215.1;Parent=gene-CFSAN001082_RS33135;Dbxref=GenBank:WP_023254215.1;Name=WP_023254215.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024565.6;locus_tag=CFSAN001082_RS33135;product=AAA family ATPase;protein_id=WP_023254215.1;transl_table=11
NZ_APAH01000184.1	RefSeq	pseudogene	11125	11273	.	-	.	ID=gene-CFSAN001082_RS48235;Name=CFSAN001082_RS48235;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48235;partial=true;pseudo=true;start_range=.,11125
NZ_APAH01000184.1	Protein Homology	CDS	11125	11273	.	-	0	ID=cds-CFSAN001082_RS48235;Parent=gene-CFSAN001082_RS48235;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611102.1;locus_tag=CFSAN001082_RS48235;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,11125;transl_table=11
NZ_APAH01000184.1	RefSeq	gene	11614	13009	.	-	.	ID=gene-CFSAN001082_RS33140;Name=CFSAN001082_RS33140;end_range=13009,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33140;old_locus_tag=CFSAN001082_09271;partial=true
NZ_APAH01000184.1	Protein Homology	CDS	11614	13009	.	-	1	ID=cds-WP_023254216.1;Parent=gene-CFSAN001082_RS33140;Dbxref=GenBank:WP_023254216.1;Name=WP_023254216.1;Ontology_term=GO:0000166,GO:0016491;end_range=13009,.;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001514529.1;locus_tag=CFSAN001082_RS33140;partial=true;product=ferredoxin reductase family protein;protein_id=WP_023254216.1;transl_table=11
##sequence-region NZ_APAH01000185.1 1 6757
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000185.1	RefSeq	region	1	6757	.	+	.	ID=NZ_APAH01000185.1:1..6757;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000185.1	RefSeq	gene	33	518	.	+	.	ID=gene-CFSAN001082_RS33145;Name=CFSAN001082_RS33145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33145;old_locus_tag=CFSAN001082_09276
NZ_APAH01000185.1	Protein Homology	CDS	33	518	.	+	0	ID=cds-WP_023254217.1;Parent=gene-CFSAN001082_RS33145;Dbxref=GenBank:WP_023254217.1;Name=WP_023254217.1;Ontology_term=GO:0033103;gbkey=CDS;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459274.1;locus_tag=CFSAN001082_RS33145;product=Hcp family type VI secretion system effector;protein_id=WP_023254217.1;transl_table=11
NZ_APAH01000185.1	RefSeq	pseudogene	585	779	.	+	.	ID=gene-CFSAN001082_RS48840;Name=CFSAN001082_RS48840;end_range=779,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48840;partial=true;pseudo=true
NZ_APAH01000185.1	Protein Homology	CDS	585	779	.	+	0	ID=cds-CFSAN001082_RS48840;Parent=gene-CFSAN001082_RS48840;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=779,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459278.1;locus_tag=CFSAN001082_RS48840;partial=true;product=type VI secretion system lipoprotein TssJ;pseudo=true;transl_table=11
NZ_APAH01000185.1	RefSeq	gene	822	1307	.	+	.	ID=gene-CFSAN001082_RS33150;Name=CFSAN001082_RS33150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33150;old_locus_tag=CFSAN001082_09286
NZ_APAH01000185.1	Protein Homology	CDS	822	1307	.	+	0	ID=cds-WP_001081550.1;Parent=gene-CFSAN001082_RS33150;Dbxref=GenBank:WP_001081550.1;Name=WP_001081550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459275.1;locus_tag=CFSAN001082_RS33150;product=type VI secretion system amidase effector protein Tae4;protein_id=WP_001081550.1;transl_table=11
NZ_APAH01000185.1	RefSeq	gene	1292	1675	.	+	.	ID=gene-CFSAN001082_RS33155;Name=CFSAN001082_RS33155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33155;old_locus_tag=CFSAN001082_09291
NZ_APAH01000185.1	Protein Homology	CDS	1292	1675	.	+	0	ID=cds-WP_000379146.1;Parent=gene-CFSAN001082_RS33155;Dbxref=GenBank:WP_000379146.1;Name=WP_000379146.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459276.1;locus_tag=CFSAN001082_RS33155;product=type VI secretion system amidase immunity protein Tai4;protein_id=WP_000379146.1;transl_table=11
NZ_APAH01000185.1	RefSeq	gene	1818	2303	.	+	.	ID=gene-CFSAN001082_RS33160;Name=CFSAN001082_RS33160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33160;old_locus_tag=CFSAN001082_09296
NZ_APAH01000185.1	Protein Homology	CDS	1818	2303	.	+	0	ID=cds-WP_000119443.1;Parent=gene-CFSAN001082_RS33160;Dbxref=GenBank:WP_000119443.1;Name=WP_000119443.1;Ontology_term=GO:0033103;gbkey=CDS;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459277.1;locus_tag=CFSAN001082_RS33160;product=Hcp family type VI secretion system effector;protein_id=WP_000119443.1;transl_table=11
NZ_APAH01000185.1	RefSeq	gene	2370	2906	.	+	.	ID=gene-CFSAN001082_RS33165;Name=tssJ;gbkey=Gene;gene=tssJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33165;old_locus_tag=CFSAN001082_09301
NZ_APAH01000185.1	Protein Homology	CDS	2370	2906	.	+	0	ID=cds-WP_023202967.1;Parent=gene-CFSAN001082_RS33165;Dbxref=GenBank:WP_023202967.1;Name=WP_023202967.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssJ;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459278.1;locus_tag=CFSAN001082_RS33165;product=type VI secretion system lipoprotein TssJ;protein_id=WP_023202967.1;transl_table=11
NZ_APAH01000185.1	RefSeq	gene	2910	4253	.	+	.	ID=gene-CFSAN001082_RS33170;Name=tssK;gbkey=Gene;gene=tssK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33170;old_locus_tag=CFSAN001082_09306
NZ_APAH01000185.1	Protein Homology	CDS	2910	4253	.	+	0	ID=cds-WP_023254218.1;Parent=gene-CFSAN001082_RS33170;Dbxref=GenBank:WP_023254218.1;Name=WP_023254218.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssK;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459279.1;locus_tag=CFSAN001082_RS33170;product=type VI secretion system baseplate subunit TssK;protein_id=WP_023254218.1;transl_table=11
NZ_APAH01000185.1	RefSeq	gene	4250	5554	.	+	.	ID=gene-CFSAN001082_RS33175;Name=tssL;gbkey=Gene;gene=tssL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33175;old_locus_tag=CFSAN001082_09311
NZ_APAH01000185.1	Protein Homology	CDS	4250	5554	.	+	0	ID=cds-WP_023254219.1;Parent=gene-CFSAN001082_RS33175;Dbxref=GenBank:WP_023254219.1;Name=WP_023254219.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;gene=tssL;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459280.1;locus_tag=CFSAN001082_RS33175;product=type VI secretion system protein TssL%2C long form;protein_id=WP_023254219.1;transl_table=11
NZ_APAH01000185.1	RefSeq	gene	5559	6332	.	+	.	ID=gene-CFSAN001082_RS33180;Name=CFSAN001082_RS33180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33180;old_locus_tag=CFSAN001082_09316
NZ_APAH01000185.1	Protein Homology	CDS	5559	6332	.	+	0	ID=cds-WP_023254220.1;Parent=gene-CFSAN001082_RS33180;Dbxref=GenBank:WP_023254220.1;Name=WP_023254220.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459281.1;locus_tag=CFSAN001082_RS33180;product=Rap1a/Tai family immunity protein;protein_id=WP_023254220.1;transl_table=11
NZ_APAH01000185.1	RefSeq	pseudogene	6535	6757	.	+	.	ID=gene-CFSAN001082_RS33185;Name=sciR;end_range=6757,.;gbkey=Gene;gene=sciR;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS33185;old_locus_tag=CFSAN001082_09321;partial=true;pseudo=true
NZ_APAH01000185.1	Protein Homology	CDS	6535	6757	.	+	0	ID=cds-CFSAN001082_RS33185;Parent=gene-CFSAN001082_RS33185;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=6757,.;gbkey=CDS;gene=sciR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459282.1;locus_tag=CFSAN001082_RS33185;partial=true;product=Shiga-like toxin A subunit SciR;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000186.1 1 209
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000186.1	RefSeq	region	1	209	.	+	.	ID=NZ_APAH01000186.1:1..209;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000186.1	RefSeq	gene	1	209	.	-	.	ID=gene-CFSAN001082_RS48845;Name=CFSAN001082_RS48845;end_range=209,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48845;old_locus_tag=CFSAN001082_09326;partial=true;start_range=.,1
NZ_APAH01000186.1	Protein Homology	CDS	1	209	.	-	2	ID=cds-WP_023254222.1;Parent=gene-CFSAN001082_RS48845;Dbxref=GenBank:WP_023254222.1;Name=WP_023254222.1;end_range=209,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000418442.1;locus_tag=CFSAN001082_RS48845;partial=true;product=DUF6575 domain-containing protein;protein_id=WP_023254222.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000187.1 1 6791
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000187.1	RefSeq	region	1	6791	.	+	.	ID=NZ_APAH01000187.1:1..6791;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000187.1	RefSeq	gene	1	685	.	+	.	ID=gene-CFSAN001082_RS33195;Name=ssaJ;gbkey=Gene;gene=ssaJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33195;old_locus_tag=CFSAN001082_09331;partial=true;start_range=.,1
NZ_APAH01000187.1	Protein Homology	CDS	1	685	.	+	1	ID=cds-WP_023254223.1;Parent=gene-CFSAN001082_RS33195;Dbxref=GenBank:WP_023254223.1;Name=WP_023254223.1;gbkey=CDS;gene=ssaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460374.1;locus_tag=CFSAN001082_RS33195;partial=true;product=SPI-2 type III secretion system apparatus lipoprotein SsaJ;protein_id=WP_023254223.1;start_range=.,1;transl_table=11
NZ_APAH01000187.1	RefSeq	gene	703	1251	.	+	.	ID=gene-CFSAN001082_RS33200;Name=CFSAN001082_RS33200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33200;old_locus_tag=CFSAN001082_09336
NZ_APAH01000187.1	Protein Homology	CDS	703	1251	.	+	0	ID=cds-WP_023254224.1;Parent=gene-CFSAN001082_RS33200;Dbxref=GenBank:WP_023254224.1;Name=WP_023254224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460375.1;locus_tag=CFSAN001082_RS33200;product=type III secretion system domain-containing protein;protein_id=WP_023254224.1;transl_table=11
NZ_APAH01000187.1	RefSeq	gene	1248	1922	.	+	.	ID=gene-CFSAN001082_RS33205;Name=ssaK;gbkey=Gene;gene=ssaK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33205;old_locus_tag=CFSAN001082_09341
NZ_APAH01000187.1	Protein Homology	CDS	1248	1922	.	+	0	ID=cds-WP_023254225.1;Parent=gene-CFSAN001082_RS33205;Dbxref=GenBank:WP_023254225.1;Name=WP_023254225.1;gbkey=CDS;gene=ssaK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460376.1;locus_tag=CFSAN001082_RS33205;product=SPI-2 type III secretion system apparatus protein SsaK;protein_id=WP_023254225.1;transl_table=11
NZ_APAH01000187.1	RefSeq	gene	1888	2904	.	+	.	ID=gene-CFSAN001082_RS33210;Name=ssaL;gbkey=Gene;gene=ssaL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33210;old_locus_tag=CFSAN001082_09346
NZ_APAH01000187.1	Protein Homology	CDS	1888	2904	.	+	0	ID=cds-WP_000238886.1;Parent=gene-CFSAN001082_RS33210;Dbxref=GenBank:WP_000238886.1;Name=WP_000238886.1;gbkey=CDS;gene=ssaL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460377.1;locus_tag=CFSAN001082_RS33210;product=SPI-2 type III secretion system apparatus protein SsaL;protein_id=WP_000238886.1;transl_table=11
NZ_APAH01000187.1	RefSeq	gene	2962	3330	.	+	.	ID=gene-CFSAN001082_RS33215;Name=ssaM;gbkey=Gene;gene=ssaM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33215;old_locus_tag=CFSAN001082_09351
NZ_APAH01000187.1	Protein Homology	CDS	2962	3330	.	+	0	ID=cds-WP_023254226.1;Parent=gene-CFSAN001082_RS33215;Dbxref=GenBank:WP_023254226.1;Name=WP_023254226.1;gbkey=CDS;gene=ssaM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460378.1;locus_tag=CFSAN001082_RS33215;product=SPI-2 type III secretion system apparatus protein SsaM;protein_id=WP_023254226.1;transl_table=11
NZ_APAH01000187.1	RefSeq	gene	3315	5360	.	+	.	ID=gene-CFSAN001082_RS33220;Name=ssaV;gbkey=Gene;gene=ssaV;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33220;old_locus_tag=CFSAN001082_09356
NZ_APAH01000187.1	Protein Homology	CDS	3315	5360	.	+	0	ID=cds-WP_023254227.1;Parent=gene-CFSAN001082_RS33220;Dbxref=GenBank:WP_023254227.1;Name=WP_023254227.1;gbkey=CDS;gene=ssaV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460379.1;locus_tag=CFSAN001082_RS33220;product=SPI-2 type III secretion system apparatus protein SsaV;protein_id=WP_023254227.1;transl_table=11
NZ_APAH01000187.1	RefSeq	gene	5350	6651	.	+	.	ID=gene-CFSAN001082_RS33225;Name=ssaN;gbkey=Gene;gene=ssaN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33225;old_locus_tag=CFSAN001082_09361
NZ_APAH01000187.1	Protein Homology	CDS	5350	6651	.	+	0	ID=cds-WP_000787213.1;Parent=gene-CFSAN001082_RS33225;Dbxref=GenBank:WP_000787213.1;Name=WP_000787213.1;gbkey=CDS;gene=ssaN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460380.1;locus_tag=CFSAN001082_RS33225;product=SctN family type III secretion system ATPase SsaN;protein_id=WP_000787213.1;transl_table=11
NZ_APAH01000187.1	RefSeq	pseudogene	6654	6791	.	+	.	ID=gene-CFSAN001082_RS33230;Name=ssaO;end_range=6791,.;gbkey=Gene;gene=ssaO;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS33230;old_locus_tag=CFSAN001082_09366;partial=true;pseudo=true
NZ_APAH01000187.1	Protein Homology	CDS	6654	6791	.	+	0	ID=cds-CFSAN001082_RS33230;Parent=gene-CFSAN001082_RS33230;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=6791,.;gbkey=CDS;gene=ssaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460381.1;locus_tag=CFSAN001082_RS33230;partial=true;product=SPI-2 type III secretion system apparatus protein SsaO;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000188.1 1 11676
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000188.1	RefSeq	region	1	11676	.	+	.	ID=NZ_APAH01000188.1:1..11676;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000188.1	RefSeq	gene	1	104	.	+	.	ID=gene-CFSAN001082_RS46920;Name=CFSAN001082_RS46920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46920;old_locus_tag=CFSAN001082_09371;partial=true;start_range=.,1
NZ_APAH01000188.1	Protein Homology	CDS	1	104	.	+	2	ID=cds-WP_023226870.1;Parent=gene-CFSAN001082_RS46920;Dbxref=GenBank:WP_023226870.1;Name=WP_023226870.1;Ontology_term=GO:0006814,GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459059.1;locus_tag=CFSAN001082_RS46920;partial=true;product=sodium ion-translocating decarboxylase subunit beta;protein_id=WP_023226870.1;start_range=.,1;transl_table=11
NZ_APAH01000188.1	RefSeq	gene	239	1858	.	+	.	ID=gene-CFSAN001082_RS33235;Name=citA;gbkey=Gene;gene=citA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33235;old_locus_tag=CFSAN001082_09376
NZ_APAH01000188.1	Protein Homology	CDS	239	1858	.	+	0	ID=cds-WP_023254229.1;Parent=gene-CFSAN001082_RS33235;Dbxref=GenBank:WP_023254229.1;Name=WP_023254229.1;gbkey=CDS;gene=citA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459058.1;locus_tag=CFSAN001082_RS33235;product=citrate sensor histidine kinase CitA;protein_id=WP_023254229.1;transl_table=11
NZ_APAH01000188.1	RefSeq	gene	1860	2546	.	+	.	ID=gene-CFSAN001082_RS33240;Name=citB;gbkey=Gene;gene=citB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33240;old_locus_tag=CFSAN001082_09381
NZ_APAH01000188.1	Protein Homology	CDS	1860	2546	.	+	0	ID=cds-WP_001647576.1;Parent=gene-CFSAN001082_RS33240;Dbxref=GenBank:WP_001647576.1;Name=WP_001647576.1;gbkey=CDS;gene=citB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459057.1;locus_tag=CFSAN001082_RS33240;product=citrate response regulator transcription factor CitB;protein_id=WP_001647576.1;transl_table=11
NZ_APAH01000188.1	RefSeq	gene	2568	3488	.	-	.	ID=gene-CFSAN001082_RS33245;Name=rihC;gbkey=Gene;gene=rihC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33245;old_locus_tag=CFSAN001082_09386
NZ_APAH01000188.1	Protein Homology	CDS	2568	3488	.	-	0	ID=cds-WP_023254230.1;Parent=gene-CFSAN001082_RS33245;Dbxref=GenBank:WP_023254230.1;Name=WP_023254230.1;Ontology_term=GO:0016799;gbkey=CDS;gene=rihC;go_function=hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459056.1;locus_tag=CFSAN001082_RS33245;product=ribonucleoside hydrolase RihC;protein_id=WP_023254230.1;transl_table=11
NZ_APAH01000188.1	RefSeq	gene	3504	4706	.	-	.	ID=gene-CFSAN001082_RS33250;Name=CFSAN001082_RS33250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33250;old_locus_tag=CFSAN001082_09391
NZ_APAH01000188.1	Protein Homology	CDS	3504	4706	.	-	0	ID=cds-WP_023254231.1;Parent=gene-CFSAN001082_RS33250;Dbxref=GenBank:WP_023254231.1;Name=WP_023254231.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459055.1;locus_tag=CFSAN001082_RS33250;product=XAC2610-related protein;protein_id=WP_023254231.1;transl_table=11
NZ_APAH01000188.1	RefSeq	gene	4906	5856	.	-	.	ID=gene-CFSAN001082_RS33255;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;gene_synonym=lytB;locus_tag=CFSAN001082_RS33255;old_locus_tag=CFSAN001082_09396
NZ_APAH01000188.1	Protein Homology	CDS	4906	5856	.	-	0	ID=cds-WP_001166428.1;Parent=gene-CFSAN001082_RS33255;Dbxref=GenBank:WP_001166428.1;Name=WP_001166428.1;Ontology_term=GO:0019288,GO:0050992,GO:0046872,GO:0051745;gbkey=CDS;gene=ispH;go_function=metal ion binding|0046872||IEA,4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity|0051745||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA,dimethylallyl diphosphate biosynthetic process|0050992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124087.1;locus_tag=CFSAN001082_RS33255;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=WP_001166428.1;transl_table=11
NZ_APAH01000188.1	RefSeq	gene	5859	6308	.	-	.	ID=gene-CFSAN001082_RS33260;Name=fkpB;gbkey=Gene;gene=fkpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33260;old_locus_tag=CFSAN001082_09401
NZ_APAH01000188.1	Protein Homology	CDS	5859	6308	.	-	0	ID=cds-WP_000047269.1;Parent=gene-CFSAN001082_RS33260;Dbxref=GenBank:WP_000047269.1;Name=WP_000047269.1;Ontology_term=GO:0003755;gbkey=CDS;gene=fkpB;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459053.1;locus_tag=CFSAN001082_RS33260;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000047269.1;transl_table=11
NZ_APAH01000188.1	RefSeq	gene	6463	6963	.	-	.	ID=gene-CFSAN001082_RS33265;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33265;old_locus_tag=CFSAN001082_09406
NZ_APAH01000188.1	Protein Homology	CDS	6463	6963	.	-	0	ID=cds-WP_000042736.1;Parent=gene-CFSAN001082_RS33265;Dbxref=GenBank:WP_000042736.1;Name=WP_000042736.1;Ontology_term=GO:0006508,GO:0009306,GO:0004190,GO:0005886;gbkey=CDS;gene=lspA;go_component=plasma membrane|0005886||IEA;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=proteolysis|0006508||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459052.1;locus_tag=CFSAN001082_RS33265;product=signal peptidase II;protein_id=WP_000042736.1;transl_table=11
NZ_APAH01000188.1	RefSeq	gene	6963	9797	.	-	.	ID=gene-CFSAN001082_RS33270;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33270;old_locus_tag=CFSAN001082_09411
NZ_APAH01000188.1	Protein Homology	CDS	6963	9797	.	-	0	ID=cds-WP_001674865.1;Parent=gene-CFSAN001082_RS33270;Dbxref=GenBank:WP_001674865.1;Name=WP_001674865.1;Ontology_term=GO:0006428,GO:0000166,GO:0004822,GO:0005524;gbkey=CDS;gene=ileS;go_function=nucleotide binding|0000166||IEA,isoleucine-tRNA ligase activity|0004822||IEA,ATP binding|0005524||IEA;go_process=isoleucyl-tRNA aminoacylation|0006428||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459051.1;locus_tag=CFSAN001082_RS33270;product=isoleucine--tRNA ligase;protein_id=WP_001674865.1;transl_table=11
NZ_APAH01000188.1	RefSeq	gene	9842	10780	.	-	.	ID=gene-CFSAN001082_RS33275;Name=ribF;gbkey=Gene;gene=ribF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33275;old_locus_tag=CFSAN001082_09416
NZ_APAH01000188.1	Protein Homology	CDS	9842	10780	.	-	0	ID=cds-WP_000767311.1;Parent=gene-CFSAN001082_RS33275;Dbxref=GenBank:WP_000767311.1;Name=WP_000767311.1;Ontology_term=GO:0003919;gbkey=CDS;gene=ribF;go_function=FMN adenylyltransferase activity|0003919||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459050.1;locus_tag=CFSAN001082_RS33275;product=bifunctional riboflavin kinase/FAD synthetase;protein_id=WP_000767311.1;transl_table=11
NZ_APAH01000188.1	RefSeq	gene	10788	11003	.	-	.	ID=gene-CFSAN001082_RS33280;Name=CFSAN001082_RS33280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33280;old_locus_tag=CFSAN001082_09421
NZ_APAH01000188.1	Protein Homology	CDS	10788	11003	.	-	0	ID=cds-WP_001726890.1;Parent=gene-CFSAN001082_RS33280;Dbxref=GenBank:WP_001726890.1;Name=WP_001726890.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459049.1;locus_tag=CFSAN001082_RS33280;product=DUF2575 family protein;protein_id=WP_001726890.1;transl_table=11
NZ_APAH01000188.1	RefSeq	gene	11109	11372	.	+	.	ID=gene-CFSAN001082_RS33285;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33285;old_locus_tag=CFSAN001082_09426
NZ_APAH01000188.1	Protein Homology	CDS	11109	11372	.	+	0	ID=cds-WP_001518655.1;Parent=gene-CFSAN001082_RS33285;Dbxref=GenBank:WP_001518655.1;Name=WP_001518655.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsT;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006117633.1;locus_tag=CFSAN001082_RS33285;product=30S ribosomal protein S20;protein_id=WP_001518655.1;transl_table=11
##sequence-region NZ_APAH01000189.1 1 219
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000189.1	RefSeq	region	1	219	.	+	.	ID=NZ_APAH01000189.1:1..219;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000189.1	RefSeq	gene	1	219	.	+	.	ID=gene-CFSAN001082_RS33290;Name=CFSAN001082_RS33290;end_range=219,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33290;old_locus_tag=CFSAN001082_09431;partial=true;start_range=.,1
NZ_APAH01000189.1	Protein Homology	CDS	1	219	.	+	2	ID=cds-WP_023254232.1;Parent=gene-CFSAN001082_RS33290;Dbxref=GenBank:WP_023254232.1;Name=WP_023254232.1;end_range=219,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835222.1;locus_tag=CFSAN001082_RS33290;partial=true;product=DUF4765 family protein;protein_id=WP_023254232.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000190.1 1 20335
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000190.1	RefSeq	region	1	20335	.	+	.	ID=NZ_APAH01000190.1:1..20335;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000190.1	cmsearch	riboswitch	292	466	.	+	.	ID=id-NZ_APAH01000190.1:292..466;Dbxref=RFAM:RF00174;Note=cobalamin riboswitch;bound_moiety=adenosylcobalamin;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_APAH01000190.1	RefSeq	gene	564	1943	.	+	.	ID=gene-CFSAN001082_RS33295;Name=CFSAN001082_RS33295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33295;old_locus_tag=CFSAN001082_09436
NZ_APAH01000190.1	Protein Homology	CDS	564	1943	.	+	0	ID=cds-WP_023243839.1;Parent=gene-CFSAN001082_RS33295;Dbxref=GenBank:WP_023243839.1;Name=WP_023243839.1;Ontology_term=GO:0042242;gbkey=CDS;go_function=cobyrinic acid a%2Cc-diamide synthase activity|0042242||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460980.1;locus_tag=CFSAN001082_RS33295;product=cobyrinate a%2Cc-diamide synthase;protein_id=WP_023243839.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	1940	2899	.	+	.	ID=gene-CFSAN001082_RS33300;Name=cbiB;gbkey=Gene;gene=cbiB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33300;old_locus_tag=CFSAN001082_09441
NZ_APAH01000190.1	Protein Homology	CDS	1940	2899	.	+	0	ID=cds-WP_000153654.1;Parent=gene-CFSAN001082_RS33300;Dbxref=GenBank:WP_000153654.1;Name=WP_000153654.1;Ontology_term=GO:0009236,GO:0048472,GO:0016020;gbkey=CDS;gene=cbiB;go_component=membrane|0016020||IEA;go_function=threonine-phosphate decarboxylase activity|0048472||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460979.1;locus_tag=CFSAN001082_RS33300;product=adenosylcobinamide-phosphate synthase CbiB;protein_id=WP_000153654.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	2910	3542	.	+	.	ID=gene-CFSAN001082_RS33305;Name=CFSAN001082_RS33305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33305;old_locus_tag=CFSAN001082_09446
NZ_APAH01000190.1	Protein Homology	CDS	2910	3542	.	+	0	ID=cds-WP_000558987.1;Parent=gene-CFSAN001082_RS33305;Dbxref=GenBank:WP_000558987.1;Name=WP_000558987.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460978.1;locus_tag=CFSAN001082_RS33305;product=cobalt-precorrin-8 methylmutase;protein_id=WP_000558987.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	3542	4681	.	+	.	ID=gene-CFSAN001082_RS33310;Name=cbiD;gbkey=Gene;gene=cbiD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33310;old_locus_tag=CFSAN001082_09451
NZ_APAH01000190.1	Protein Homology	CDS	3542	4681	.	+	0	ID=cds-WP_001292908.1;Parent=gene-CFSAN001082_RS33310;Dbxref=GenBank:WP_001292908.1;Name=WP_001292908.1;Ontology_term=GO:0009236,GO:0005737;gbkey=CDS;gene=cbiD;go_component=cytoplasm|0005737||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460977.1;locus_tag=CFSAN001082_RS33310;product=cobalt-precorrin-5B (C(1))-methyltransferase CbiD;protein_id=WP_001292908.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	4675	5280	.	+	.	ID=gene-CFSAN001082_RS33315;Name=CFSAN001082_RS33315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33315;old_locus_tag=CFSAN001082_09456
NZ_APAH01000190.1	Protein Homology	CDS	4675	5280	.	+	0	ID=cds-WP_000958838.1;Parent=gene-CFSAN001082_RS33315;Dbxref=GenBank:WP_000958838.1;Name=WP_000958838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460976.1;locus_tag=CFSAN001082_RS33315;product=cobalt-precorrin-7 (C(5))-methyltransferase;protein_id=WP_000958838.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	5270	5848	.	+	.	ID=gene-CFSAN001082_RS33320;Name=CFSAN001082_RS33320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33320;old_locus_tag=CFSAN001082_09461
NZ_APAH01000190.1	Protein Homology	CDS	5270	5848	.	+	0	ID=cds-WP_000650985.1;Parent=gene-CFSAN001082_RS33320;Dbxref=GenBank:WP_000650985.1;Name=WP_000650985.1;Ontology_term=GO:0009236,GO:0008276;gbkey=CDS;go_function=protein methyltransferase activity|0008276||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460975.1;locus_tag=CFSAN001082_RS33320;product=decarboxylating cobalt-precorrin-6B (C(15))-methyltransferase;protein_id=WP_000650985.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	5832	6605	.	+	.	ID=gene-CFSAN001082_RS33325;Name=CFSAN001082_RS33325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33325;old_locus_tag=CFSAN001082_09466
NZ_APAH01000190.1	Protein Homology	CDS	5832	6605	.	+	0	ID=cds-WP_000004870.1;Parent=gene-CFSAN001082_RS33325;Dbxref=GenBank:WP_000004870.1;Name=WP_000004870.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460974.1;locus_tag=CFSAN001082_RS33325;product=cobalt-precorrin-4 methyltransferase;protein_id=WP_000004870.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	6586	7641	.	+	.	ID=gene-CFSAN001082_RS33330;Name=cbiG;gbkey=Gene;gene=cbiG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33330;old_locus_tag=CFSAN001082_09471
NZ_APAH01000190.1	Protein Homology	CDS	6586	7641	.	+	0	ID=cds-WP_001098912.1;Parent=gene-CFSAN001082_RS33330;Dbxref=GenBank:WP_001098912.1;Name=WP_001098912.1;gbkey=CDS;gene=cbiG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460973.1;locus_tag=CFSAN001082_RS33330;product=cobalt-precorrin 5A hydrolase;protein_id=WP_001098912.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	7641	8366	.	+	.	ID=gene-CFSAN001082_RS33335;Name=CFSAN001082_RS33335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33335;old_locus_tag=CFSAN001082_09476
NZ_APAH01000190.1	Protein Homology	CDS	7641	8366	.	+	0	ID=cds-WP_023254233.1;Parent=gene-CFSAN001082_RS33335;Dbxref=GenBank:WP_023254233.1;Name=WP_023254233.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460972.1;locus_tag=CFSAN001082_RS33335;product=precorrin-3B C(17)-methyltransferase;protein_id=WP_023254233.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	8363	9154	.	+	.	ID=gene-CFSAN001082_RS33340;Name=CFSAN001082_RS33340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33340;old_locus_tag=CFSAN001082_09481
NZ_APAH01000190.1	Protein Homology	CDS	8363	9154	.	+	0	ID=cds-WP_023254234.1;Parent=gene-CFSAN001082_RS33340;Dbxref=GenBank:WP_023254234.1;Name=WP_023254234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460971.1;locus_tag=CFSAN001082_RS33340;product=cobalt-precorrin-6A reductase;protein_id=WP_023254234.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	9157	9951	.	+	.	ID=gene-CFSAN001082_RS33345;Name=cbiK;gbkey=Gene;gene=cbiK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33345;old_locus_tag=CFSAN001082_09486
NZ_APAH01000190.1	Protein Homology	CDS	9157	9951	.	+	0	ID=cds-WP_000709784.1;Parent=gene-CFSAN001082_RS33345;Dbxref=GenBank:WP_000709784.1;Name=WP_000709784.1;Ontology_term=GO:0006779,GO:0016852,GO:0046906;gbkey=CDS;gene=cbiK;go_function=sirohydrochlorin cobaltochelatase activity|0016852||IEA,tetrapyrrole binding|0046906||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460970.1;locus_tag=CFSAN001082_RS33345;product=sirohydrochlorin cobaltochelatase;protein_id=WP_000709784.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	9948	10661	.	+	.	ID=gene-CFSAN001082_RS33350;Name=CFSAN001082_RS33350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33350;old_locus_tag=CFSAN001082_09491
NZ_APAH01000190.1	Protein Homology	CDS	9948	10661	.	+	0	ID=cds-WP_001013552.1;Parent=gene-CFSAN001082_RS33350;Dbxref=GenBank:WP_001013552.1;Name=WP_001013552.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460969.1;locus_tag=CFSAN001082_RS33350;product=cobalt-factor II C(20)-methyltransferase;protein_id=WP_001013552.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	10658	11395	.	+	.	ID=gene-CFSAN001082_RS33355;Name=cbiM;gbkey=Gene;gene=cbiM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33355;old_locus_tag=CFSAN001082_09496
NZ_APAH01000190.1	Protein Homology	CDS	10658	11395	.	+	0	ID=cds-WP_000764336.1;Parent=gene-CFSAN001082_RS33355;Dbxref=GenBank:WP_000764336.1;Name=WP_000764336.1;Ontology_term=GO:0006824,GO:0009236,GO:0016020,GO:0043190;gbkey=CDS;gene=cbiM;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_process=cobalt ion transport|0006824||IEA,cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460968.3;locus_tag=CFSAN001082_RS33355;product=cobalt ECF transporter S component CbiM;protein_id=WP_000764336.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	11397	11678	.	+	.	ID=gene-CFSAN001082_RS33360;Name=CFSAN001082_RS33360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33360;old_locus_tag=CFSAN001082_09501
NZ_APAH01000190.1	Protein Homology	CDS	11397	11678	.	+	0	ID=cds-WP_000753212.1;Parent=gene-CFSAN001082_RS33360;Dbxref=GenBank:WP_000753212.1;Name=WP_000753212.1;Ontology_term=GO:0006824,GO:0009236,GO:0015087,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=cobalt ion transmembrane transporter activity|0015087||IEA;go_process=cobalt ion transport|0006824||IEA,cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460967.1;locus_tag=CFSAN001082_RS33360;product=energy-coupling factor ABC transporter substrate-binding protein;protein_id=WP_000753212.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	11665	12342	.	+	.	ID=gene-CFSAN001082_RS33365;Name=CFSAN001082_RS33365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33365;old_locus_tag=CFSAN001082_09506
NZ_APAH01000190.1	Protein Homology	CDS	11665	12342	.	+	0	ID=cds-WP_000147138.1;Parent=gene-CFSAN001082_RS33365;Dbxref=GenBank:WP_000147138.1;Name=WP_000147138.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460966.1;locus_tag=CFSAN001082_RS33365;product=energy-coupling factor ABC transporter transmembrane protein;protein_id=WP_000147138.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	12351	13166	.	+	.	ID=gene-CFSAN001082_RS33370;Name=CFSAN001082_RS33370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33370;old_locus_tag=CFSAN001082_09511
NZ_APAH01000190.1	Protein Homology	CDS	12351	13166	.	+	0	ID=cds-WP_001808107.1;Parent=gene-CFSAN001082_RS33370;Dbxref=GenBank:WP_001808107.1;Name=WP_001808107.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460965.1;locus_tag=CFSAN001082_RS33370;product=energy-coupling factor ABC transporter ATP-binding protein;protein_id=WP_001808107.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	13163	14683	.	+	.	ID=gene-CFSAN001082_RS33375;Name=CFSAN001082_RS33375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33375;old_locus_tag=CFSAN001082_09516
NZ_APAH01000190.1	Protein Homology	CDS	13163	14683	.	+	0	ID=cds-WP_023254235.1;Parent=gene-CFSAN001082_RS33375;Dbxref=GenBank:WP_023254235.1;Name=WP_023254235.1;Ontology_term=GO:0009236,GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460964.1;locus_tag=CFSAN001082_RS33375;product=cobyric acid synthase;protein_id=WP_023254235.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	14680	15225	.	+	.	ID=gene-CFSAN001082_RS33380;Name=cobU;gbkey=Gene;gene=cobU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33380;old_locus_tag=CFSAN001082_09521
NZ_APAH01000190.1	Protein Homology	CDS	14680	15225	.	+	0	ID=cds-WP_000973193.1;Parent=gene-CFSAN001082_RS33380;Dbxref=GenBank:WP_000973193.1;Name=WP_000973193.1;Ontology_term=GO:0009236,GO:0000166,GO:0043752;gbkey=CDS;gene=cobU;go_function=nucleotide binding|0000166||IEA,adenosylcobinamide kinase activity|0043752||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460963.1;locus_tag=CFSAN001082_RS33380;product=bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase;protein_id=WP_000973193.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	15222	15965	.	+	.	ID=gene-CFSAN001082_RS33385;Name=cobS;gbkey=Gene;gene=cobS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33385;old_locus_tag=CFSAN001082_09526
NZ_APAH01000190.1	Protein Homology	CDS	15222	15965	.	+	0	ID=cds-WP_023224568.1;Parent=gene-CFSAN001082_RS33385;Dbxref=GenBank:WP_023224568.1;Name=WP_023224568.1;Ontology_term=GO:0009236,GO:0008818,GO:0051073;gbkey=CDS;gene=cobS;go_function=cobalamin 5'-phosphate synthase activity|0008818||IEA,adenosylcobinamide-GDP ribazoletransferase activity|0051073||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460962.1;locus_tag=CFSAN001082_RS33385;product=adenosylcobinamide-GDP ribazoletransferase;protein_id=WP_023224568.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	15992	17062	.	+	.	ID=gene-CFSAN001082_RS33390;Name=cobT;gbkey=Gene;gene=cobT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33390;old_locus_tag=CFSAN001082_09531
NZ_APAH01000190.1	Protein Homology	CDS	15992	17062	.	+	0	ID=cds-WP_001193976.1;Parent=gene-CFSAN001082_RS33390;Dbxref=GenBank:WP_001193976.1;Name=WP_001193976.1;Ontology_term=GO:0009236,GO:0008939;gbkey=CDS;gene=cobT;go_function=nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity|0008939||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460961.1;locus_tag=CFSAN001082_RS33390;product=nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase;protein_id=WP_001193976.1;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	17140	18069	.	+	.	ID=gene-CFSAN001082_RS33395;Name=ldtA;gbkey=Gene;gene=ldtA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33395;old_locus_tag=CFSAN001082_09536
NZ_APAH01000190.1	Protein Homology	CDS	17140	18069	.	+	0	ID=cds-WP_001252817.1;Parent=gene-CFSAN001082_RS33395;Dbxref=GenBank:WP_001252817.1;Name=WP_001252817.1;Ontology_term=GO:0016740;gbkey=CDS;gene=ldtA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460960.1;locus_tag=CFSAN001082_RS33395;product=L%2CD-transpeptidase;protein_id=WP_001252817.1;transl_table=11
NZ_APAH01000190.1	RefSeq	pseudogene	18218	18385	.	-	.	ID=gene-CFSAN001082_RS48850;Name=CFSAN001082_RS48850;end_range=18385,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48850;partial=true;pseudo=true
NZ_APAH01000190.1	Protein Homology	CDS	18218	18385	.	-	0	ID=cds-CFSAN001082_RS48850;Parent=gene-CFSAN001082_RS48850;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0003677;end_range=18385,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: protein motif:HMM:NF024750.6;locus_tag=CFSAN001082_RS48850;partial=true;product=Arm DNA-binding domain-containing protein;pseudo=true;transl_table=11
NZ_APAH01000190.1	RefSeq	pseudogene	18504	18767	.	+	.	ID=gene-CFSAN001082_RS46285;Name=CFSAN001082_RS46285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46285;partial=true;pseudo=true;start_range=.,18504
NZ_APAH01000190.1	Protein Homology	CDS	18504	18767	.	+	0	ID=cds-CFSAN001082_RS46285;Parent=gene-CFSAN001082_RS46285;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000511771.1;locus_tag=CFSAN001082_RS46285;partial=true;product=integrase domain-containing protein;pseudo=true;start_range=.,18504;transl_table=11
NZ_APAH01000190.1	RefSeq	gene	19223	20335	.	+	.	ID=gene-CFSAN001082_RS33400;Name=CFSAN001082_RS33400;end_range=20335,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33400;old_locus_tag=CFSAN001082_09551;partial=true
NZ_APAH01000190.1	Protein Homology	CDS	19223	20335	.	+	0	ID=cds-WP_023254236.1;Parent=gene-CFSAN001082_RS33400;Dbxref=GenBank:WP_023254236.1;Name=WP_023254236.1;Ontology_term=GO:0009058,GO:0030170;end_range=20335,.;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000992186.1;locus_tag=CFSAN001082_RS33400;partial=true;product=aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme;protein_id=WP_023254236.1;transl_table=11
##sequence-region NZ_APAH01000191.1 1 694
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000191.1	RefSeq	region	1	694	.	+	.	ID=NZ_APAH01000191.1:1..694;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000191.1	RefSeq	gene	409	694	.	+	.	ID=gene-CFSAN001082_RS33405;Name=CFSAN001082_RS33405;end_range=694,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33405;old_locus_tag=CFSAN001082_09556;partial=true
NZ_APAH01000191.1	Protein Homology	CDS	409	694	.	+	0	ID=cds-WP_024150274.1;Parent=gene-CFSAN001082_RS33405;Dbxref=GenBank:WP_024150274.1;Name=WP_024150274.1;end_range=694,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460216.1;locus_tag=CFSAN001082_RS33405;partial=true;product=c-type lysozyme inhibitor;protein_id=WP_024150274.1;transl_table=11
##sequence-region NZ_APAH01000192.1 1 51747
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000192.1	RefSeq	region	1	51747	.	+	.	ID=NZ_APAH01000192.1:1..51747;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000192.1	RefSeq	gene	1	208	.	+	.	ID=gene-CFSAN001082_RS33410;Name=iraP;gbkey=Gene;gene=iraP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33410;old_locus_tag=CFSAN001082_09561;partial=true;start_range=.,1
NZ_APAH01000192.1	Protein Homology	CDS	1	208	.	+	1	ID=cds-WP_023254238.1;Parent=gene-CFSAN001082_RS33410;Dbxref=GenBank:WP_023254238.1;Name=WP_023254238.1;gbkey=CDS;gene=iraP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748986.1;locus_tag=CFSAN001082_RS33410;partial=true;product=anti-adapter protein IraP;protein_id=WP_023254238.1;start_range=.,1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	561	881	.	+	.	ID=gene-CFSAN001082_RS33415;Name=psiF;gbkey=Gene;gene=psiF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33415;old_locus_tag=CFSAN001082_09566
NZ_APAH01000192.1	Protein Homology	CDS	561	881	.	+	0	ID=cds-WP_000705165.1;Parent=gene-CFSAN001082_RS33415;Dbxref=GenBank:WP_000705165.1;Name=WP_000705165.1;gbkey=CDS;gene=psiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459379.1;locus_tag=CFSAN001082_RS33415;product=phosphate starvation-inducible protein PsiF;protein_id=WP_000705165.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	973	2085	.	+	.	ID=gene-CFSAN001082_RS33420;Name=adrA;gbkey=Gene;gene=adrA;gene_biotype=protein_coding;gene_synonym=dgcC;locus_tag=CFSAN001082_RS33420;old_locus_tag=CFSAN001082_09571
NZ_APAH01000192.1	Protein Homology	CDS	973	2085	.	+	0	ID=cds-WP_023254239.1;Parent=gene-CFSAN001082_RS33420;Dbxref=GenBank:WP_023254239.1;Name=WP_023254239.1;gbkey=CDS;gene=adrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459380.1;locus_tag=CFSAN001082_RS33420;product=diguanylate cyclase AdrA;protein_id=WP_023254239.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	2100	2909	.	-	.	ID=gene-CFSAN001082_RS33425;Name=proC;gbkey=Gene;gene=proC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33425;old_locus_tag=CFSAN001082_09576
NZ_APAH01000192.1	Protein Homology	CDS	2100	2909	.	-	0	ID=cds-WP_023254240.1;Parent=gene-CFSAN001082_RS33425;Dbxref=GenBank:WP_023254240.1;Name=WP_023254240.1;Ontology_term=GO:0006561,GO:0004735;gbkey=CDS;gene=proC;go_function=pyrroline-5-carboxylate reductase activity|0004735||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459381.1;locus_tag=CFSAN001082_RS33425;product=pyrroline-5-carboxylate reductase;protein_id=WP_023254240.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	3049	3504	.	+	.	ID=gene-CFSAN001082_RS33430;Name=CFSAN001082_RS33430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33430;old_locus_tag=CFSAN001082_09581
NZ_APAH01000192.1	Protein Homology	CDS	3049	3504	.	+	0	ID=cds-WP_000158136.1;Parent=gene-CFSAN001082_RS33430;Dbxref=GenBank:WP_000158136.1;Name=WP_000158136.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459382.1;locus_tag=CFSAN001082_RS33430;product=YaiI/YqxD family protein;protein_id=WP_000158136.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	3689	4234	.	+	.	ID=gene-CFSAN001082_RS33435;Name=aroL;gbkey=Gene;gene=aroL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33435;old_locus_tag=CFSAN001082_09586
NZ_APAH01000192.1	Protein Homology	CDS	3689	4234	.	+	0	ID=cds-WP_000983570.1;Parent=gene-CFSAN001082_RS33435;Dbxref=GenBank:WP_000983570.1;Name=WP_000983570.1;Ontology_term=GO:0009073,GO:0004765;gbkey=CDS;gene=aroL;go_function=shikimate kinase activity|0004765||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459383.1;locus_tag=CFSAN001082_RS33435;product=shikimate kinase AroL;protein_id=WP_000983570.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	4261	4452	.	+	.	ID=gene-CFSAN001082_RS33440;Name=yaiA;gbkey=Gene;gene=yaiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33440;old_locus_tag=CFSAN001082_09591
NZ_APAH01000192.1	Protein Homology	CDS	4261	4452	.	+	0	ID=cds-WP_001143161.1;Parent=gene-CFSAN001082_RS33440;Dbxref=GenBank:WP_001143161.1;Name=WP_001143161.1;gbkey=CDS;gene=yaiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459384.1;locus_tag=CFSAN001082_RS33440;product=protein YaiA;protein_id=WP_001143161.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	4703	5380	.	+	.	ID=gene-CFSAN001082_RS33445;Name=CFSAN001082_RS33445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33445;old_locus_tag=CFSAN001082_09596
NZ_APAH01000192.1	Protein Homology	CDS	4703	5380	.	+	0	ID=cds-WP_001276437.1;Parent=gene-CFSAN001082_RS33445;Dbxref=GenBank:WP_001276437.1;Name=WP_001276437.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459385.1;locus_tag=CFSAN001082_RS33445;product=AroM family protein;protein_id=WP_001276437.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	5451	5735	.	+	.	ID=gene-CFSAN001082_RS33450;Name=ppnP;gbkey=Gene;gene=ppnP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33450;old_locus_tag=CFSAN001082_09601
NZ_APAH01000192.1	Protein Homology	CDS	5451	5735	.	+	0	ID=cds-WP_000941953.1;Parent=gene-CFSAN001082_RS33450;Dbxref=GenBank:WP_000941953.1;Name=WP_000941953.1;gbkey=CDS;gene=ppnP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459386.1;locus_tag=CFSAN001082_RS33450;product=pyrimidine/purine nucleoside phosphorylase;protein_id=WP_000941953.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	5773	6684	.	-	.	ID=gene-CFSAN001082_RS33455;Name=rdgC;gbkey=Gene;gene=rdgC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33455;old_locus_tag=CFSAN001082_09606
NZ_APAH01000192.1	Protein Homology	CDS	5773	6684	.	-	0	ID=cds-WP_000964305.1;Parent=gene-CFSAN001082_RS33455;Dbxref=GenBank:WP_000964305.1;Name=WP_000964305.1;Ontology_term=GO:0006310;gbkey=CDS;gene=rdgC;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120935.1;locus_tag=CFSAN001082_RS33455;product=recombination-associated protein RdgC;protein_id=WP_000964305.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	6810	7718	.	+	.	ID=gene-CFSAN001082_RS33460;Name=mak;gbkey=Gene;gene=mak;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33460;old_locus_tag=CFSAN001082_09611
NZ_APAH01000192.1	Protein Homology	CDS	6810	7718	.	+	0	ID=cds-WP_001219277.1;Parent=gene-CFSAN001082_RS33460;Dbxref=GenBank:WP_001219277.1;Name=WP_001219277.1;gbkey=CDS;gene=mak;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459388.1;locus_tag=CFSAN001082_RS33460;product=fructokinase;protein_id=WP_001219277.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	7738	8910	.	-	.	ID=gene-CFSAN001082_RS33465;Name=araJ;gbkey=Gene;gene=araJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33465;old_locus_tag=CFSAN001082_09621
NZ_APAH01000192.1	Protein Homology	CDS	7738	8910	.	-	0	ID=cds-WP_000755630.1;Parent=gene-CFSAN001082_RS33465;Dbxref=GenBank:WP_000755630.1;Name=WP_000755630.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=araJ;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459389.1;locus_tag=CFSAN001082_RS33465;product=MFS transporter AraJ;protein_id=WP_000755630.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	9083	12223	.	-	.	ID=gene-CFSAN001082_RS33470;Name=sbcC;gbkey=Gene;gene=sbcC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33470;old_locus_tag=CFSAN001082_09626
NZ_APAH01000192.1	Protein Homology	CDS	9083	12223	.	-	0	ID=cds-WP_023254241.1;Parent=gene-CFSAN001082_RS33470;Dbxref=GenBank:WP_023254241.1;Name=WP_023254241.1;Ontology_term=GO:0006260,GO:0004527;gbkey=CDS;gene=sbcC;go_function=exonuclease activity|0004527||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459390.1;locus_tag=CFSAN001082_RS33470;product=exonuclease subunit SbcC;protein_id=WP_023254241.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	12220	13422	.	-	.	ID=gene-CFSAN001082_RS33475;Name=sbcD;gbkey=Gene;gene=sbcD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33475;old_locus_tag=CFSAN001082_09631
NZ_APAH01000192.1	Protein Homology	CDS	12220	13422	.	-	0	ID=cds-WP_023254242.1;Parent=gene-CFSAN001082_RS33475;Dbxref=GenBank:WP_023254242.1;Name=WP_023254242.1;Ontology_term=GO:0006260,GO:0006310,GO:0004527;gbkey=CDS;gene=sbcD;go_function=exonuclease activity|0004527||IEA;go_process=DNA replication|0006260||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459391.1;locus_tag=CFSAN001082_RS33475;product=exonuclease subunit SbcD;protein_id=WP_023254242.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	13637	14326	.	+	.	ID=gene-CFSAN001082_RS33485;Name=phoB;gbkey=Gene;gene=phoB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33485;old_locus_tag=CFSAN001082_09641
NZ_APAH01000192.1	Protein Homology	CDS	13637	14326	.	+	0	ID=cds-WP_000113918.1;Parent=gene-CFSAN001082_RS33485;Dbxref=GenBank:WP_000113918.1;Name=WP_000113918.1;gbkey=CDS;gene=phoB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000113934.1;locus_tag=CFSAN001082_RS33485;product=phosphate response regulator transcription factor PhoB;protein_id=WP_000113918.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	14396	15691	.	+	.	ID=gene-CFSAN001082_RS33490;Name=phoR;gbkey=Gene;gene=phoR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33490;old_locus_tag=CFSAN001082_09646
NZ_APAH01000192.1	Protein Homology	CDS	14396	15691	.	+	0	ID=cds-WP_000893642.1;Parent=gene-CFSAN001082_RS33490;Dbxref=GenBank:WP_000893642.1;Name=WP_000893642.1;Ontology_term=GO:0000160,GO:0006355,GO:0016310,GO:0000155,GO:0004721,GO:0016020;gbkey=CDS;gene=phoR;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,phosphoprotein phosphatase activity|0004721||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459393.1;locus_tag=CFSAN001082_RS33490;product=phosphate regulon sensor histidine kinase PhoR;protein_id=WP_000893642.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	16100	17419	.	+	.	ID=gene-CFSAN001082_RS33495;Name=brnQ;gbkey=Gene;gene=brnQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33495;old_locus_tag=CFSAN001082_09651
NZ_APAH01000192.1	Protein Homology	CDS	16100	17419	.	+	0	ID=cds-WP_000149625.1;Parent=gene-CFSAN001082_RS33495;Dbxref=GenBank:WP_000149625.1;Name=WP_000149625.1;gbkey=CDS;gene=brnQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459394.1;locus_tag=CFSAN001082_RS33495;product=branched-chain amino acid transporter carrier protein BrnQ;protein_id=WP_000149625.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	17494	18864	.	+	.	ID=gene-CFSAN001082_RS33500;Name=proY;gbkey=Gene;gene=proY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33500;old_locus_tag=CFSAN001082_09656
NZ_APAH01000192.1	Protein Homology	CDS	17494	18864	.	+	0	ID=cds-WP_001537837.1;Parent=gene-CFSAN001082_RS33500;Dbxref=GenBank:WP_001537837.1;Name=WP_001537837.1;Ontology_term=GO:0006865,GO:0055085,GO:0016020;gbkey=CDS;gene=proY;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459395.1;locus_tag=CFSAN001082_RS33500;product=proline-specific permease ProY;protein_id=WP_001537837.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	19026	20843	.	+	.	ID=gene-CFSAN001082_RS33505;Name=malZ;gbkey=Gene;gene=malZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33505;old_locus_tag=CFSAN001082_09661
NZ_APAH01000192.1	Protein Homology	CDS	19026	20843	.	+	0	ID=cds-WP_023254243.1;Parent=gene-CFSAN001082_RS33505;Dbxref=GenBank:WP_023254243.1;Name=WP_023254243.1;Ontology_term=GO:0005975,GO:0004558;gbkey=CDS;gene=malZ;go_function=alpha-1%2C4-glucosidase activity|0004558||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459396.1;locus_tag=CFSAN001082_RS33505;product=maltodextrin glucosidase;protein_id=WP_023254243.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	20915	21517	.	-	.	ID=gene-CFSAN001082_RS33510;Name=CFSAN001082_RS33510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33510;old_locus_tag=CFSAN001082_09666
NZ_APAH01000192.1	Protein Homology	CDS	20915	21517	.	-	0	ID=cds-WP_000244731.1;Parent=gene-CFSAN001082_RS33510;Dbxref=GenBank:WP_000244731.1;Name=WP_000244731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459397.1;locus_tag=CFSAN001082_RS33510;product=peroxiredoxin;protein_id=WP_000244731.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	21727	22308	.	-	.	ID=gene-CFSAN001082_RS33515;Name=acpH;gbkey=Gene;gene=acpH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33515;old_locus_tag=CFSAN001082_09671
NZ_APAH01000192.1	Protein Homology	CDS	21727	22308	.	-	0	ID=cds-WP_001009858.1;Parent=gene-CFSAN001082_RS33515;Dbxref=GenBank:WP_001009858.1;Name=WP_001009858.1;Ontology_term=GO:0006633,GO:0008770;gbkey=CDS;gene=acpH;go_function=[acyl-carrier-protein] phosphodiesterase activity|0008770||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459398.1;locus_tag=CFSAN001082_RS33515;product=ACP phosphodiesterase;protein_id=WP_001009858.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	22402	23466	.	+	.	ID=gene-CFSAN001082_RS33520;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33520;old_locus_tag=CFSAN001082_09676
NZ_APAH01000192.1	Protein Homology	CDS	22402	23466	.	+	0	ID=cds-WP_001266530.1;Parent=gene-CFSAN001082_RS33520;Dbxref=GenBank:WP_001266530.1;Name=WP_001266530.1;Ontology_term=GO:0006400,GO:0008616,GO:0051075,GO:0005737;gbkey=CDS;gene=queA;go_component=cytoplasm|0005737||IEA;go_function=S-adenosylmethionine:tRNA ribosyltransferase-isomerase activity|0051075||IEA;go_process=tRNA modification|0006400||IEA,queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459399.1;locus_tag=CFSAN001082_RS33520;product=tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA;protein_id=WP_001266530.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	23663	24790	.	+	.	ID=gene-CFSAN001082_RS33525;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33525;old_locus_tag=CFSAN001082_09681
NZ_APAH01000192.1	Protein Homology	CDS	23663	24790	.	+	0	ID=cds-WP_000667305.1;Parent=gene-CFSAN001082_RS33525;Dbxref=GenBank:WP_000667305.1;Name=WP_000667305.1;Ontology_term=GO:0006400,GO:0008479,GO:0005737;gbkey=CDS;gene=tgt;go_component=cytoplasm|0005737||IEA;go_function=tRNA-guanosine(34) queuine transglycosylase activity|0008479||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904808.1;locus_tag=CFSAN001082_RS33525;product=tRNA guanosine(34) transglycosylase Tgt;protein_id=WP_000667305.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	24813	25145	.	+	.	ID=gene-CFSAN001082_RS33530;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33530;old_locus_tag=CFSAN001082_09686
NZ_APAH01000192.1	Protein Homology	CDS	24813	25145	.	+	0	ID=cds-WP_000007628.1;Parent=gene-CFSAN001082_RS33530;Dbxref=GenBank:WP_000007628.1;Name=WP_000007628.1;Ontology_term=GO:0009306,GO:0015450,GO:0005886;gbkey=CDS;gene=yajC;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000007628.1;locus_tag=CFSAN001082_RS33530;product=preprotein translocase subunit YajC;protein_id=WP_000007628.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	25173	27020	.	+	.	ID=gene-CFSAN001082_RS33535;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33535;old_locus_tag=CFSAN001082_09691
NZ_APAH01000192.1	Protein Homology	CDS	25173	27020	.	+	0	ID=cds-WP_000934811.1;Parent=gene-CFSAN001082_RS33535;Dbxref=GenBank:WP_000934811.1;Name=WP_000934811.1;Ontology_term=GO:0006886,GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secD;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=intracellular protein transport|0006886||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125127.1;locus_tag=CFSAN001082_RS33535;product=protein translocase subunit SecD;protein_id=WP_000934811.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	27031	28002	.	+	.	ID=gene-CFSAN001082_RS33540;Name=secF;gbkey=Gene;gene=secF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33540;old_locus_tag=CFSAN001082_09696
NZ_APAH01000192.1	Protein Homology	CDS	27031	28002	.	+	0	ID=cds-WP_000046629.1;Parent=gene-CFSAN001082_RS33540;Dbxref=GenBank:WP_000046629.1;Name=WP_000046629.1;Ontology_term=GO:0006886,GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secF;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=intracellular protein transport|0006886||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459403.1;locus_tag=CFSAN001082_RS33540;product=protein translocase subunit SecF;protein_id=WP_000046629.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	28097	28444	.	+	.	ID=gene-CFSAN001082_RS33545;Name=yajD;gbkey=Gene;gene=yajD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33545;old_locus_tag=CFSAN001082_09701
NZ_APAH01000192.1	Protein Homology	CDS	28097	28444	.	+	0	ID=cds-WP_000974818.1;Parent=gene-CFSAN001082_RS33545;Dbxref=GenBank:WP_000974818.1;Name=WP_000974818.1;gbkey=CDS;gene=yajD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459406.1;locus_tag=CFSAN001082_RS33545;product=HNH nuclease YajD;protein_id=WP_000974818.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	28882	28989	.	+	.	ID=gene-CFSAN001082_RS48240;Name=CFSAN001082_RS48240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48240;old_locus_tag=CFSAN001082_09706
NZ_APAH01000192.1	Protein Homology	CDS	28882	28989	.	+	0	ID=cds-WP_000176312.1;Parent=gene-CFSAN001082_RS48240;Dbxref=GenBank:WP_000176312.1;Name=WP_000176312.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000176312.1;locus_tag=CFSAN001082_RS48240;product=type I toxin-antitoxin system toxin Ldr family protein;protein_id=WP_000176312.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	29073	29936	.	-	.	ID=gene-CFSAN001082_RS33555;Name=CFSAN001082_RS33555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33555;old_locus_tag=CFSAN001082_09711
NZ_APAH01000192.1	Protein Homology	CDS	29073	29936	.	-	0	ID=cds-WP_000752021.1;Parent=gene-CFSAN001082_RS33555;Dbxref=GenBank:WP_000752021.1;Name=WP_000752021.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459408.1;locus_tag=CFSAN001082_RS33555;product=nucleoside-specific channel-forming protein Tsx;protein_id=WP_000752021.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	30236	30775	.	-	.	ID=gene-CFSAN001082_RS33560;Name=CFSAN001082_RS33560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33560;old_locus_tag=CFSAN001082_09716
NZ_APAH01000192.1	Protein Homology	CDS	30236	30775	.	-	0	ID=cds-WP_000198488.1;Parent=gene-CFSAN001082_RS33560;Dbxref=GenBank:WP_000198488.1;Name=WP_000198488.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459409.1;locus_tag=CFSAN001082_RS33560;product=DUF3251 domain-containing protein;protein_id=WP_000198488.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	30927	31376	.	+	.	ID=gene-CFSAN001082_RS33565;Name=nrdR;gbkey=Gene;gene=nrdR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33565;old_locus_tag=CFSAN001082_09721
NZ_APAH01000192.1	Protein Homology	CDS	30927	31376	.	+	0	ID=cds-WP_000543533.1;Parent=gene-CFSAN001082_RS33565;Dbxref=GenBank:WP_000543533.1;Name=WP_000543533.1;Ontology_term=GO:0006355,GO:0008270,GO:0140110;gbkey=CDS;gene=nrdR;go_function=zinc ion binding|0008270||IEA,transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017458860.1;locus_tag=CFSAN001082_RS33565;product=transcriptional regulator NrdR;protein_id=WP_000543533.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	31380	32483	.	+	.	ID=gene-CFSAN001082_RS33570;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33570;old_locus_tag=CFSAN001082_09726
NZ_APAH01000192.1	Protein Homology	CDS	31380	32483	.	+	0	ID=cds-WP_023254244.1;Parent=gene-CFSAN001082_RS33570;Dbxref=GenBank:WP_023254244.1;Name=WP_023254244.1;Ontology_term=GO:0008270,GO:0008703,GO:0008835,GO:0050661;gbkey=CDS;gene=ribD;go_function=zinc ion binding|0008270||IEA,5-amino-6-(5-phosphoribosylamino)uracil reductase activity|0008703||IEA,diaminohydroxyphosphoribosylaminopyrimidine deaminase activity|0008835||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459411.1;locus_tag=CFSAN001082_RS33570;product=bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD;protein_id=WP_023254244.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	32572	33042	.	+	.	ID=gene-CFSAN001082_RS33575;Name=ribE;gbkey=Gene;gene=ribE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33575;old_locus_tag=CFSAN001082_09731
NZ_APAH01000192.1	Protein Homology	CDS	32572	33042	.	+	0	ID=cds-WP_001021372.1;Parent=gene-CFSAN001082_RS33575;Dbxref=GenBank:WP_001021372.1;Name=WP_001021372.1;Ontology_term=GO:0000906,GO:0009349;gbkey=CDS;gene=ribE;go_component=riboflavin synthase complex|0009349||IEA;go_function=6%2C7-dimethyl-8-ribityllumazine synthase activity|0000906||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006818760.1;locus_tag=CFSAN001082_RS33575;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=WP_001021372.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	33063	33482	.	+	.	ID=gene-CFSAN001082_RS33580;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33580;old_locus_tag=CFSAN001082_09736
NZ_APAH01000192.1	Protein Homology	CDS	33063	33482	.	+	0	ID=cds-WP_000801129.1;Parent=gene-CFSAN001082_RS33580;Dbxref=GenBank:WP_000801129.1;Name=WP_000801129.1;Ontology_term=GO:0006353;gbkey=CDS;gene=nusB;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459413.1;locus_tag=CFSAN001082_RS33580;product=transcription antitermination factor NusB;protein_id=WP_000801129.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	33561	34541	.	+	.	ID=gene-CFSAN001082_RS33585;Name=thiL;gbkey=Gene;gene=thiL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33585;old_locus_tag=CFSAN001082_09741
NZ_APAH01000192.1	Protein Homology	CDS	33561	34541	.	+	0	ID=cds-WP_001658864.1;Parent=gene-CFSAN001082_RS33585;Dbxref=GenBank:WP_001658864.1;Name=WP_001658864.1;Ontology_term=GO:0009228,GO:0009030;gbkey=CDS;gene=thiL;go_function=thiamine-phosphate kinase activity|0009030||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308497.1;locus_tag=CFSAN001082_RS33585;product=thiamine-phosphate kinase;protein_id=WP_001658864.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	34519	35034	.	+	.	ID=gene-CFSAN001082_RS33590;Name=pgpA;gbkey=Gene;gene=pgpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33590;old_locus_tag=CFSAN001082_09746
NZ_APAH01000192.1	Protein Homology	CDS	34519	35034	.	+	0	ID=cds-WP_000154063.1;Parent=gene-CFSAN001082_RS33590;Dbxref=GenBank:WP_000154063.1;Name=WP_000154063.1;Ontology_term=GO:0006629,GO:0008962;gbkey=CDS;gene=pgpA;go_function=phosphatidylglycerophosphatase activity|0008962||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459415.1;locus_tag=CFSAN001082_RS33590;product=phosphatidylglycerophosphatase A;protein_id=WP_000154063.1;transl_table=11
NZ_APAH01000192.1	RefSeq	pseudogene	35039	35130	.	-	.	ID=gene-CFSAN001082_RS49205;Name=CFSAN001082_RS49205;end_range=35130,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49205;partial=true;pseudo=true;start_range=.,35039
NZ_APAH01000192.1	Protein Homology	CDS	35039	35130	.	-	0	ID=cds-CFSAN001082_RS49205;Parent=gene-CFSAN001082_RS49205;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=35130,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=CFSAN001082_RS49205;partial=true;product=hypothetical protein;pseudo=true;start_range=.,35039;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	35138	36112	.	-	.	ID=gene-CFSAN001082_RS33595;Name=CFSAN001082_RS33595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33595;old_locus_tag=CFSAN001082_09751
NZ_APAH01000192.1	Protein Homology	CDS	35138	36112	.	-	0	ID=cds-WP_001199869.1;Parent=gene-CFSAN001082_RS33595;Dbxref=GenBank:WP_001199869.1;Name=WP_001199869.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459416.1;locus_tag=CFSAN001082_RS33595;product=aldo/keto reductase;protein_id=WP_001199869.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	36169	38031	.	-	.	ID=gene-CFSAN001082_RS33600;Name=dxs;gbkey=Gene;gene=dxs;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33600;old_locus_tag=CFSAN001082_09756
NZ_APAH01000192.1	Protein Homology	CDS	36169	38031	.	-	0	ID=cds-WP_000006786.1;Parent=gene-CFSAN001082_RS33600;Dbxref=GenBank:WP_000006786.1;Name=WP_000006786.1;Ontology_term=GO:0008615,GO:0009228,GO:0009240,GO:0008661,GO:0005737;gbkey=CDS;gene=dxs;go_component=cytoplasm|0005737||IEA;go_function=1-deoxy-D-xylulose-5-phosphate synthase activity|0008661||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA,thiamine biosynthetic process|0009228||IEA,isopentenyl diphosphate biosynthetic process|0009240||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459417.1;locus_tag=CFSAN001082_RS33600;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=WP_000006786.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	38055	38954	.	-	.	ID=gene-CFSAN001082_RS33605;Name=ispA;gbkey=Gene;gene=ispA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33605;old_locus_tag=CFSAN001082_09761
NZ_APAH01000192.1	Protein Homology	CDS	38055	38954	.	-	0	ID=cds-WP_000348076.1;Parent=gene-CFSAN001082_RS33605;Dbxref=GenBank:WP_000348076.1;Name=WP_000348076.1;Ontology_term=GO:0008299;gbkey=CDS;gene=ispA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459418.1;locus_tag=CFSAN001082_RS33605;product=(2E%2C6E)-farnesyl diphosphate synthase;protein_id=WP_000348076.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	38955	39197	.	-	.	ID=gene-CFSAN001082_RS33610;Name=xseB;gbkey=Gene;gene=xseB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33610;old_locus_tag=CFSAN001082_09766
NZ_APAH01000192.1	Protein Homology	CDS	38955	39197	.	-	0	ID=cds-WP_001124944.1;Parent=gene-CFSAN001082_RS33610;Dbxref=GenBank:WP_001124944.1;Name=WP_001124944.1;gbkey=CDS;gene=xseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459419.1;locus_tag=CFSAN001082_RS33610;product=exodeoxyribonuclease VII small subunit;protein_id=WP_001124944.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	39407	40855	.	+	.	ID=gene-CFSAN001082_RS33615;Name=thiI;gbkey=Gene;gene=thiI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33615;old_locus_tag=CFSAN001082_09771
NZ_APAH01000192.1	Protein Homology	CDS	39407	40855	.	+	0	ID=cds-WP_000668656.1;Parent=gene-CFSAN001082_RS33615;Dbxref=GenBank:WP_000668656.1;Name=WP_000668656.1;Ontology_term=GO:0006400,GO:0009228,GO:0140741;gbkey=CDS;gene=thiI;go_function=tRNA-uracil-4 sulfurtransferase activity|0140741||IEA;go_process=tRNA modification|0006400||IEA,thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014168857.1;locus_tag=CFSAN001082_RS33615;product=tRNA uracil 4-sulfurtransferase ThiI;protein_id=WP_000668656.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	40899	41696	.	-	.	ID=gene-CFSAN001082_RS33620;Name=phnV;gbkey=Gene;gene=phnV;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33620;old_locus_tag=CFSAN001082_09776
NZ_APAH01000192.1	Protein Homology	CDS	40899	41696	.	-	0	ID=cds-WP_000909791.1;Parent=gene-CFSAN001082_RS33620;Dbxref=GenBank:WP_000909791.1;Name=WP_000909791.1;Ontology_term=GO:0033223,GO:0033225,GO:0016020;gbkey=CDS;gene=phnV;go_component=membrane|0016020||IEA;go_function=ATPase-coupled 2-aminoethylphosphonate transporter activity|0033225||IEA;go_process=2-aminoethylphosphonate transport|0033223||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459421.1;locus_tag=CFSAN001082_RS33620;product=2-aminoethylphosphonate ABC transport system%2C membrane component PhnV;protein_id=WP_000909791.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	41690	42559	.	-	.	ID=gene-CFSAN001082_RS33625;Name=phnU;gbkey=Gene;gene=phnU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33625;old_locus_tag=CFSAN001082_09781
NZ_APAH01000192.1	Protein Homology	CDS	41690	42559	.	-	0	ID=cds-WP_000052717.1;Parent=gene-CFSAN001082_RS33625;Dbxref=GenBank:WP_000052717.1;Name=WP_000052717.1;Ontology_term=GO:0033223,GO:0033225,GO:0016020;gbkey=CDS;gene=phnU;go_component=membrane|0016020||IEA;go_function=ATPase-coupled 2-aminoethylphosphonate transporter activity|0033225||IEA;go_process=2-aminoethylphosphonate transport|0033223||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000052714.1;locus_tag=CFSAN001082_RS33625;product=2-aminoethylphosphonate ABC transporter permease subunit;protein_id=WP_000052717.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	42562	43671	.	-	.	ID=gene-CFSAN001082_RS33630;Name=phnT;gbkey=Gene;gene=phnT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33630;old_locus_tag=CFSAN001082_09786
NZ_APAH01000192.1	Protein Homology	CDS	42562	43671	.	-	0	ID=cds-WP_000928788.1;Parent=gene-CFSAN001082_RS33630;Dbxref=GenBank:WP_000928788.1;Name=WP_000928788.1;Ontology_term=GO:0033223,GO:0005524,GO:0033225,GO:0009898,GO:0055052;gbkey=CDS;gene=phnT;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled 2-aminoethylphosphonate transporter activity|0033225||IEA;go_process=2-aminoethylphosphonate transport|0033223||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459423.1;locus_tag=CFSAN001082_RS33630;product=2-aminoethylphosphonate ABC transport system ATP-binding subunit PhnT;protein_id=WP_000928788.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	43677	44690	.	-	.	ID=gene-CFSAN001082_RS33635;Name=phnS;gbkey=Gene;gene=phnS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33635;old_locus_tag=CFSAN001082_09791
NZ_APAH01000192.1	Protein Homology	CDS	43677	44690	.	-	0	ID=cds-WP_000778008.1;Parent=gene-CFSAN001082_RS33635;Dbxref=GenBank:WP_000778008.1;Name=WP_000778008.1;Ontology_term=GO:0033223,GO:0033225,GO:0033226,GO:0009897,GO:0030288,GO:0055052;gbkey=CDS;gene=phnS;go_component=external side of plasma membrane|0009897||IEA,outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled 2-aminoethylphosphonate transporter activity|0033225||IEA,2-aminoethylphosphonate binding|0033226||IEA;go_process=2-aminoethylphosphonate transport|0033223||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459424.1;locus_tag=CFSAN001082_RS33635;product=2-aminoethylphosphonate ABC transporter substrate-binding protein;protein_id=WP_000778008.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	44888	45607	.	-	.	ID=gene-CFSAN001082_RS33640;Name=phnR;gbkey=Gene;gene=phnR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33640;old_locus_tag=CFSAN001082_09796
NZ_APAH01000192.1	Protein Homology	CDS	44888	45607	.	-	0	ID=cds-WP_000836268.1;Parent=gene-CFSAN001082_RS33640;Dbxref=GenBank:WP_000836268.1;Name=WP_000836268.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=phnR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459425.1;locus_tag=CFSAN001082_RS33640;product=phosphonate utilization transcriptional regulator PhnR;protein_id=WP_000836268.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	45747	46850	.	+	.	ID=gene-CFSAN001082_RS33645;Name=phnW;gbkey=Gene;gene=phnW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33645;old_locus_tag=CFSAN001082_09801
NZ_APAH01000192.1	Protein Homology	CDS	45747	46850	.	+	0	ID=cds-WP_000203963.1;Parent=gene-CFSAN001082_RS33645;Dbxref=GenBank:WP_000203963.1;Name=WP_000203963.1;Ontology_term=GO:0019700,GO:0047304;gbkey=CDS;gene=phnW;go_function=2-aminoethylphosphonate-pyruvate transaminase activity|0047304||IEA;go_process=organic phosphonate catabolic process|0019700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459426.1;locus_tag=CFSAN001082_RS33645;product=2-aminoethylphosphonate--pyruvate transaminase;protein_id=WP_000203963.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	46860	47669	.	+	.	ID=gene-CFSAN001082_RS33650;Name=phnX;gbkey=Gene;gene=phnX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33650;old_locus_tag=CFSAN001082_09806
NZ_APAH01000192.1	Protein Homology	CDS	46860	47669	.	+	0	ID=cds-WP_001530701.1;Parent=gene-CFSAN001082_RS33650;Dbxref=GenBank:WP_001530701.1;Name=WP_001530701.1;Ontology_term=GO:0019700,GO:0050194;gbkey=CDS;gene=phnX;go_function=phosphonoacetaldehyde hydrolase activity|0050194||IEA;go_process=organic phosphonate catabolic process|0019700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005229535.1;locus_tag=CFSAN001082_RS33650;product=phosphonoacetaldehyde hydrolase;protein_id=WP_001530701.1;transl_table=11
NZ_APAH01000192.1	RefSeq	pseudogene	47675	47757	.	+	.	ID=gene-CFSAN001082_RS49210;Name=CFSAN001082_RS49210;end_range=47757,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49210;partial=true;pseudo=true;start_range=.,47675
NZ_APAH01000192.1	Protein Homology	CDS	47675	47757	.	+	0	ID=cds-CFSAN001082_RS49210;Parent=gene-CFSAN001082_RS49210;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=47757,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=CFSAN001082_RS49210;partial=true;product=hypothetical protein;pseudo=true;start_range=.,47675;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	47766	48356	.	-	.	ID=gene-CFSAN001082_RS33655;Name=yajL;gbkey=Gene;gene=yajL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33655;old_locus_tag=CFSAN001082_09811
NZ_APAH01000192.1	Protein Homology	CDS	47766	48356	.	-	0	ID=cds-WP_001275807.1;Parent=gene-CFSAN001082_RS33655;Dbxref=GenBank:WP_001275807.1;Name=WP_001275807.1;gbkey=CDS;gene=yajL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459428.1;locus_tag=CFSAN001082_RS33655;product=protein deglycase YajL;protein_id=WP_001275807.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	48319	49230	.	-	.	ID=gene-CFSAN001082_RS33660;Name=panE;gbkey=Gene;gene=panE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33660;old_locus_tag=CFSAN001082_09816
NZ_APAH01000192.1	Protein Homology	CDS	48319	49230	.	-	0	ID=cds-WP_000705816.1;Parent=gene-CFSAN001082_RS33660;Dbxref=GenBank:WP_000705816.1;Name=WP_000705816.1;Ontology_term=GO:0015940,GO:0008677;gbkey=CDS;gene=panE;go_function=2-dehydropantoate 2-reductase activity|0008677||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459429.1;locus_tag=CFSAN001082_RS33660;product=2-dehydropantoate 2-reductase;protein_id=WP_000705816.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	49356	49847	.	+	.	ID=gene-CFSAN001082_RS33665;Name=CFSAN001082_RS33665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33665;old_locus_tag=CFSAN001082_09821
NZ_APAH01000192.1	Protein Homology	CDS	49356	49847	.	+	0	ID=cds-WP_001138913.1;Parent=gene-CFSAN001082_RS33665;Dbxref=GenBank:WP_001138913.1;Name=WP_001138913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965590.1;locus_tag=CFSAN001082_RS33665;product=YajQ family cyclic di-GMP-binding protein;protein_id=WP_001138913.1;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	49894	51258	.	-	.	ID=gene-CFSAN001082_RS33670;Name=CFSAN001082_RS33670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33670;old_locus_tag=CFSAN001082_09826
NZ_APAH01000192.1	Protein Homology	CDS	49894	51258	.	-	0	ID=cds-WP_001000935.1;Parent=gene-CFSAN001082_RS33670;Dbxref=GenBank:WP_001000935.1;Name=WP_001000935.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016507029.1;locus_tag=CFSAN001082_RS33670;product=MFS transporter;protein_id=WP_001000935.1;transl_table=11
NZ_APAH01000192.1	RefSeq	pseudogene	51489	51620	.	-	.	ID=gene-CFSAN001082_RS48855;Name=CFSAN001082_RS48855;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48855;partial=true;pseudo=true;start_range=.,51489
NZ_APAH01000192.1	Protein Homology	CDS	51489	51620	.	-	0	ID=cds-CFSAN001082_RS48855;Parent=gene-CFSAN001082_RS48855;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_032491235.1;locus_tag=CFSAN001082_RS48855;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,51489;transl_table=11
NZ_APAH01000192.1	RefSeq	gene	51557	51747	.	-	.	ID=gene-CFSAN001082_RS48860;Name=CFSAN001082_RS48860;end_range=51747,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48860;partial=true
NZ_APAH01000192.1	GeneMarkS-2+	CDS	51557	51747	.	-	2	ID=cds-WP_071787095.1;Parent=gene-CFSAN001082_RS48860;Dbxref=GenBank:WP_071787095.1;Name=WP_071787095.1;end_range=51747,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48860;partial=true;product=hypothetical protein;protein_id=WP_071787095.1;transl_table=11
##sequence-region NZ_APAH01000193.1 1 14963
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000193.1	RefSeq	region	1	14963	.	+	.	ID=NZ_APAH01000193.1:1..14963;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000193.1	RefSeq	gene	211	870	.	+	.	ID=gene-CFSAN001082_RS33675;Name=trhA;gbkey=Gene;gene=trhA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33675;old_locus_tag=CFSAN001082_09831
NZ_APAH01000193.1	Protein Homology	CDS	211	870	.	+	0	ID=cds-WP_000250289.1;Parent=gene-CFSAN001082_RS33675;Dbxref=GenBank:WP_000250289.1;Name=WP_000250289.1;Ontology_term=GO:0019835;gbkey=CDS;gene=trhA;go_process=cytolysis|0019835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461965.1;locus_tag=CFSAN001082_RS33675;product=PAQR family membrane homeostasis protein TrhA;protein_id=WP_000250289.1;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	986	1966	.	-	.	ID=gene-CFSAN001082_RS33680;Name=ygfZ;gbkey=Gene;gene=ygfZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33680;old_locus_tag=CFSAN001082_09836
NZ_APAH01000193.1	Protein Homology	CDS	986	1966	.	-	0	ID=cds-WP_023254245.1;Parent=gene-CFSAN001082_RS33680;Dbxref=GenBank:WP_023254245.1;Name=WP_023254245.1;Ontology_term=GO:0009451,GO:0005542;gbkey=CDS;gene=ygfZ;go_function=folic acid binding|0005542||IEA;go_process=RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461964.1;locus_tag=CFSAN001082_RS33680;product=tRNA-modifying protein YgfZ;protein_id=WP_023254245.1;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	2216	2482	.	+	.	ID=gene-CFSAN001082_RS33690;Name=sdhE;gbkey=Gene;gene=sdhE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33690;old_locus_tag=CFSAN001082_09846
NZ_APAH01000193.1	Protein Homology	CDS	2216	2482	.	+	0	ID=cds-WP_000351186.1;Parent=gene-CFSAN001082_RS33690;Dbxref=GenBank:WP_000351186.1;Name=WP_000351186.1;gbkey=CDS;gene=sdhE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000354044.1;locus_tag=CFSAN001082_RS33690;product=FAD assembly factor SdhE;protein_id=WP_000351186.1;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	2463	2876	.	+	.	ID=gene-CFSAN001082_RS33695;Name=CFSAN001082_RS33695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33695;old_locus_tag=CFSAN001082_09851
NZ_APAH01000193.1	Protein Homology	CDS	2463	2876	.	+	0	ID=cds-WP_000244755.1;Parent=gene-CFSAN001082_RS33695;Dbxref=GenBank:WP_000244755.1;Name=WP_000244755.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461962.1;locus_tag=CFSAN001082_RS33695;product=protein YgfX;protein_id=WP_000244755.1;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	2929	3450	.	-	.	ID=gene-CFSAN001082_RS33700;Name=fldB;gbkey=Gene;gene=fldB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33700;old_locus_tag=CFSAN001082_09856
NZ_APAH01000193.1	Protein Homology	CDS	2929	3450	.	-	0	ID=cds-WP_023254246.1;Parent=gene-CFSAN001082_RS33700;Dbxref=GenBank:WP_023254246.1;Name=WP_023254246.1;Ontology_term=GO:0009055,GO:0010181;gbkey=CDS;gene=fldB;go_function=electron transfer activity|0009055||IEA,FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461961.1;locus_tag=CFSAN001082_RS33700;product=flavodoxin FldB;protein_id=WP_023254246.1;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	3563	4459	.	+	.	ID=gene-CFSAN001082_RS33705;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33705;old_locus_tag=CFSAN001082_09861
NZ_APAH01000193.1	Protein Homology	CDS	3563	4459	.	+	0	ID=cds-WP_000434302.1;Parent=gene-CFSAN001082_RS33705;Dbxref=GenBank:WP_000434302.1;Name=WP_000434302.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;gene=xerD;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461960.1;locus_tag=CFSAN001082_RS33705;product=site-specific tyrosine recombinase XerD;protein_id=WP_000434302.1;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	4483	5196	.	+	.	ID=gene-CFSAN001082_RS33710;Name=dsbC;gbkey=Gene;gene=dsbC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33710;old_locus_tag=CFSAN001082_09866
NZ_APAH01000193.1	Protein Homology	CDS	4483	5196	.	+	0	ID=cds-WP_000745614.1;Parent=gene-CFSAN001082_RS33710;Dbxref=GenBank:WP_000745614.1;Name=WP_000745614.1;Ontology_term=GO:0042597;gbkey=CDS;gene=dsbC;go_component=periplasmic space|0042597||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461959.1;locus_tag=CFSAN001082_RS33710;product=bifunctional protein-disulfide isomerase/oxidoreductase DsbC;protein_id=WP_000745614.1;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	5202	6935	.	+	.	ID=gene-CFSAN001082_RS33715;Name=recJ;gbkey=Gene;gene=recJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33715;old_locus_tag=CFSAN001082_09871
NZ_APAH01000193.1	Protein Homology	CDS	5202	6935	.	+	0	ID=cds-WP_000813387.1;Parent=gene-CFSAN001082_RS33715;Dbxref=GenBank:WP_000813387.1;Name=WP_000813387.1;Ontology_term=GO:0006281,GO:0006310,GO:0008409;gbkey=CDS;gene=recJ;go_function=5'-3' exonuclease activity|0008409||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461958.1;locus_tag=CFSAN001082_RS33715;product=single-stranded-DNA-specific exonuclease RecJ;protein_id=WP_000813387.1;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	7040	8138	.	+	.	ID=gene-CFSAN001082_RS0123360;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123360
NZ_APAH01000193.1	Protein Homology	CDS	7040	7114	.	+	0	ID=cds-WP_010989230.1;Parent=gene-CFSAN001082_RS0123360;Dbxref=GenBank:WP_010989230.1;Name=WP_010989230.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0016149,GO:0005737;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_component=cytoplasm|0005737||IEA;go_function=translation release factor activity%2C codon specific|0016149||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311790.1;locus_tag=CFSAN001082_RS0123360;product=peptide chain release factor 2;protein_id=WP_010989230.1;transl_table=11
NZ_APAH01000193.1	Protein Homology	CDS	7116	8138	.	+	0	ID=cds-WP_010989230.1;Parent=gene-CFSAN001082_RS0123360;Dbxref=GenBank:WP_010989230.1;Name=WP_010989230.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0016149,GO:0005737;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_component=cytoplasm|0005737||IEA;go_function=translation release factor activity%2C codon specific|0016149||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311790.1;locus_tag=CFSAN001082_RS0123360;product=peptide chain release factor 2;protein_id=WP_010989230.1;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	8148	9665	.	+	.	ID=gene-CFSAN001082_RS33720;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33720;old_locus_tag=CFSAN001082_09886
NZ_APAH01000193.1	Protein Homology	CDS	8148	9665	.	+	0	ID=cds-WP_000003339.1;Parent=gene-CFSAN001082_RS33720;Dbxref=GenBank:WP_000003339.1;Name=WP_000003339.1;Ontology_term=GO:0006430,GO:0004824,GO:0005524,GO:0005737;gbkey=CDS;gene=lysS;go_component=cytoplasm|0005737||IEA;go_function=lysine-tRNA ligase activity|0004824||IEA,ATP binding|0005524||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001740376.1;locus_tag=CFSAN001082_RS33720;product=lysine--tRNA ligase;protein_id=WP_000003339.1;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	9741	10286	.	-	.	ID=gene-CFSAN001082_RS33725;Name=idi;gbkey=Gene;gene=idi;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33725;old_locus_tag=CFSAN001082_09891
NZ_APAH01000193.1	Protein Homology	CDS	9741	10286	.	-	0	ID=cds-WP_000133992.1;Parent=gene-CFSAN001082_RS33725;Dbxref=GenBank:WP_000133992.1;Name=WP_000133992.1;Ontology_term=GO:0008299,GO:0004452;gbkey=CDS;gene=idi;go_function=isopentenyl-diphosphate delta-isomerase activity|0004452||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461955.1;locus_tag=CFSAN001082_RS33725;product=isopentenyl-diphosphate Delta-isomerase;protein_id=WP_000133992.1;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	10551	11309	.	+	.	ID=gene-CFSAN001082_RS33730;Name=actS;gbkey=Gene;gene=actS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33730;old_locus_tag=CFSAN001082_09896
NZ_APAH01000193.1	Protein Homology	CDS	10551	11309	.	+	0	ID=cds-WP_000244317.1;Parent=gene-CFSAN001082_RS33730;Dbxref=GenBank:WP_000244317.1;Name=WP_000244317.1;gbkey=CDS;gene=actS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461954.1;locus_tag=CFSAN001082_RS33730;product=amidase activator ActS;protein_id=WP_000244317.1;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	11389	11462	.	+	.	ID=gene-CFSAN001082_RS33735;Name=CFSAN001082_RS33735;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS33735;old_locus_tag=CFSAN001082_t09928
NZ_APAH01000193.1	tRNAscan-SE	tRNA	11389	11462	.	+	.	ID=rna-CFSAN001082_RS33735;Parent=gene-CFSAN001082_RS33735;anticodon=(pos:11421..11423);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS33735;product=tRNA-Gly
NZ_APAH01000193.1	tRNAscan-SE	exon	11389	11462	.	+	.	ID=exon-CFSAN001082_RS33735-1;Parent=rna-CFSAN001082_RS33735;anticodon=(pos:11421..11423);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS33735;product=tRNA-Gly
NZ_APAH01000193.1	RefSeq	gene	11594	12400	.	-	.	ID=gene-CFSAN001082_RS33740;Name=CFSAN001082_RS33740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33740;old_locus_tag=CFSAN001082_09901
NZ_APAH01000193.1	Protein Homology	CDS	11594	12400	.	-	0	ID=cds-WP_010989071.1;Parent=gene-CFSAN001082_RS33740;Dbxref=GenBank:WP_010989071.1;Name=WP_010989071.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461953.1;locus_tag=CFSAN001082_RS33740;product=DUF1460 domain-containing protein;protein_id=WP_010989071.1;transl_table=11
NZ_APAH01000193.1	RefSeq	pseudogene	12591	12761	.	+	.	ID=gene-CFSAN001082_RS46290;Name=vapC;gbkey=Gene;gene=vapC;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46290;partial=true;pseudo=true;start_range=.,12591
NZ_APAH01000193.1	Protein Homology	CDS	12591	12761	.	+	0	ID=cds-CFSAN001082_RS46290;Parent=gene-CFSAN001082_RS46290;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;gene=vapC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461950.1;locus_tag=CFSAN001082_RS46290;partial=true;product=tRNA(fMet)-specific endonuclease VapC;pseudo=true;start_range=.,12591;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	13567	14103	.	+	.	ID=gene-CFSAN001082_RS33745;Name=CFSAN001082_RS33745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33745;old_locus_tag=CFSAN001082_09916
NZ_APAH01000193.1	Protein Homology	CDS	13567	14103	.	+	0	ID=cds-WP_001038500.1;Parent=gene-CFSAN001082_RS33745;Dbxref=GenBank:WP_001038500.1;Name=WP_001038500.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461948.1;locus_tag=CFSAN001082_RS33745;product=STM3031 family outer membrane protein;protein_id=WP_001038500.1;transl_table=11
NZ_APAH01000193.1	RefSeq	gene	14150	14782	.	+	.	ID=gene-CFSAN001082_RS33750;Name=CFSAN001082_RS33750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33750;old_locus_tag=CFSAN001082_09921
NZ_APAH01000193.1	Protein Homology	CDS	14150	14782	.	+	0	ID=cds-WP_000835262.1;Parent=gene-CFSAN001082_RS33750;Dbxref=GenBank:WP_000835262.1;Name=WP_000835262.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461947.1;locus_tag=CFSAN001082_RS33750;product=YfdX family protein;protein_id=WP_000835262.1;transl_table=11
##sequence-region NZ_APAH01000194.1 1 279
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000194.1	RefSeq	region	1	279	.	+	.	ID=NZ_APAH01000194.1:1..279;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000194.1	RefSeq	pseudogene	53	279	.	+	.	ID=gene-CFSAN001082_RS48865;Name=CFSAN001082_RS48865;end_range=279,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48865;old_locus_tag=CFSAN001082_09928;partial=true;pseudo=true
NZ_APAH01000194.1	Protein Homology	CDS	53	279	.	+	0	ID=cds-CFSAN001082_RS48865;Parent=gene-CFSAN001082_RS48865;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=279,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000376822.1;locus_tag=CFSAN001082_RS48865;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000195.1 1 3205
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000195.1	RefSeq	region	1	3205	.	+	.	ID=NZ_APAH01000195.1:1..3205;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000195.1	RefSeq	gene	1	456	.	+	.	ID=gene-CFSAN001082_RS33760;Name=cueP;gbkey=Gene;gene=cueP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33760;old_locus_tag=CFSAN001082_09933;partial=true;start_range=.,1
NZ_APAH01000195.1	Protein Homology	CDS	1	456	.	+	0	ID=cds-WP_023254248.1;Parent=gene-CFSAN001082_RS33760;Dbxref=GenBank:WP_023254248.1;Name=WP_023254248.1;gbkey=CDS;gene=cueP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462551.1;locus_tag=CFSAN001082_RS33760;partial=true;product=copper-binding periplasmic metallochaperone CueP;protein_id=WP_023254248.1;start_range=.,1;transl_table=11
NZ_APAH01000195.1	RefSeq	gene	827	1312	.	-	.	ID=gene-CFSAN001082_RS33765;Name=CFSAN001082_RS33765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33765;old_locus_tag=CFSAN001082_09938
NZ_APAH01000195.1	Protein Homology	CDS	827	1312	.	-	0	ID=cds-WP_000533909.1;Parent=gene-CFSAN001082_RS33765;Dbxref=GenBank:WP_000533909.1;Name=WP_000533909.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462552.1;locus_tag=CFSAN001082_RS33765;product=GNAT family N-acetyltransferase;protein_id=WP_000533909.1;transl_table=11
NZ_APAH01000195.1	RefSeq	gene	1300	1587	.	-	.	ID=gene-CFSAN001082_RS33770;Name=CFSAN001082_RS33770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33770;old_locus_tag=CFSAN001082_09943
NZ_APAH01000195.1	Protein Homology	CDS	1300	1587	.	-	0	ID=cds-WP_000965889.1;Parent=gene-CFSAN001082_RS33770;Dbxref=GenBank:WP_000965889.1;Name=WP_000965889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462553.1;locus_tag=CFSAN001082_RS33770;product=DUF1778 domain-containing protein;protein_id=WP_000965889.1;transl_table=11
NZ_APAH01000195.1	RefSeq	gene	2063	2929	.	+	.	ID=gene-CFSAN001082_RS48870;Name=CFSAN001082_RS48870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48870;old_locus_tag=CFSAN001082_09948
NZ_APAH01000195.1	Protein Homology	CDS	2063	2929	.	+	0	ID=cds-WP_031612771.1;Parent=gene-CFSAN001082_RS48870;Dbxref=GenBank:WP_031612771.1;Name=WP_031612771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016569949.1;locus_tag=CFSAN001082_RS48870;product=hypothetical protein;protein_id=WP_031612771.1;transl_table=11
##sequence-region NZ_APAH01000196.1 1 50265
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000196.1	RefSeq	region	1	50265	.	+	.	ID=NZ_APAH01000196.1:1..50265;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000196.1	RefSeq	gene	39	503	.	-	.	ID=gene-CFSAN001082_RS33780;Name=CFSAN001082_RS33780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33780;old_locus_tag=CFSAN001082_09953
NZ_APAH01000196.1	Protein Homology	CDS	39	503	.	-	0	ID=cds-WP_001213256.1;Parent=gene-CFSAN001082_RS33780;Dbxref=GenBank:WP_001213256.1;Name=WP_001213256.1;Ontology_term=GO:0000270,GO:0006508,GO:0008233,GO:0008234,GO:0016787;gbkey=CDS;go_function=peptidase activity|0008233||IEA,cysteine-type peptidase activity|0008234||IEA,hydrolase activity|0016787||IEA;go_process=peptidoglycan metabolic process|0000270||IEA,proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460309.1;locus_tag=CFSAN001082_RS33780;product=C40 family peptidase;protein_id=WP_001213256.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	580	1329	.	-	.	ID=gene-CFSAN001082_RS33785;Name=btuD;gbkey=Gene;gene=btuD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33785;old_locus_tag=CFSAN001082_09958
NZ_APAH01000196.1	Protein Homology	CDS	580	1329	.	-	0	ID=cds-WP_000080607.1;Parent=gene-CFSAN001082_RS33785;Dbxref=GenBank:WP_000080607.1;Name=WP_000080607.1;Ontology_term=GO:0015889,GO:0005524;gbkey=CDS;gene=btuD;go_function=ATP binding|0005524||IEA;go_process=cobalamin transport|0015889||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460308.1;locus_tag=CFSAN001082_RS33785;product=vitamin B12 ABC transporter ATP-binding protein BtuD;protein_id=WP_000080607.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	1329	1880	.	-	.	ID=gene-CFSAN001082_RS33790;Name=CFSAN001082_RS33790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33790;old_locus_tag=CFSAN001082_09963
NZ_APAH01000196.1	Protein Homology	CDS	1329	1880	.	-	0	ID=cds-WP_001181565.1;Parent=gene-CFSAN001082_RS33790;Dbxref=GenBank:WP_001181565.1;Name=WP_001181565.1;Ontology_term=GO:0006979,GO:0004602;gbkey=CDS;go_function=glutathione peroxidase activity|0004602||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460307.1;locus_tag=CFSAN001082_RS33790;product=glutathione peroxidase;protein_id=WP_001181565.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	1972	2952	.	-	.	ID=gene-CFSAN001082_RS33795;Name=btuC;gbkey=Gene;gene=btuC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33795;old_locus_tag=CFSAN001082_09968
NZ_APAH01000196.1	Protein Homology	CDS	1972	2952	.	-	0	ID=cds-WP_000954984.1;Parent=gene-CFSAN001082_RS33795;Dbxref=GenBank:WP_000954984.1;Name=WP_000954984.1;Ontology_term=GO:0005524,GO:0022857;gbkey=CDS;gene=btuC;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460306.1;locus_tag=CFSAN001082_RS33795;product=vitamin B12 ABC transporter permease BtuC;protein_id=WP_000954984.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	3155	3454	.	-	.	ID=gene-CFSAN001082_RS33800;Name=ihfA;gbkey=Gene;gene=ihfA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33800;old_locus_tag=CFSAN001082_09973
NZ_APAH01000196.1	Protein Homology	CDS	3155	3454	.	-	0	ID=cds-WP_001229266.1;Parent=gene-CFSAN001082_RS33800;Dbxref=GenBank:WP_001229266.1;Name=WP_001229266.1;Ontology_term=GO:0006310,GO:0006355,GO:0003677;gbkey=CDS;gene=ihfA;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460305.1;locus_tag=CFSAN001082_RS33800;product=integration host factor subunit alpha;protein_id=WP_001229266.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	3459	5846	.	-	.	ID=gene-CFSAN001082_RS33805;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33805;old_locus_tag=CFSAN001082_09978
NZ_APAH01000196.1	Protein Homology	CDS	3459	5846	.	-	0	ID=cds-WP_000672402.1;Parent=gene-CFSAN001082_RS33805;Dbxref=GenBank:WP_000672402.1;Name=WP_000672402.1;Ontology_term=GO:0006432,GO:0000287,GO:0004826,GO:0005524;gbkey=CDS;gene=pheT;go_function=magnesium ion binding|0000287||IEA,phenylalanine-tRNA ligase activity|0004826||IEA,ATP binding|0005524||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460304.1;locus_tag=CFSAN001082_RS33805;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_000672402.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	5862	6845	.	-	.	ID=gene-CFSAN001082_RS33810;Name=pheS;gbkey=Gene;gene=pheS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33810;old_locus_tag=CFSAN001082_09983
NZ_APAH01000196.1	Protein Homology	CDS	5862	6845	.	-	0	ID=cds-WP_000018570.1;Parent=gene-CFSAN001082_RS33810;Dbxref=GenBank:WP_000018570.1;Name=WP_000018570.1;Ontology_term=GO:0006432,GO:0000166,GO:0004826,GO:0005524,GO:0005737;gbkey=CDS;gene=pheS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,phenylalanine-tRNA ligase activity|0004826||IEA,ATP binding|0005524||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004851795.1;locus_tag=CFSAN001082_RS33810;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_000018570.1;transl_table=11
NZ_APAH01000196.1	cmsearch	sequence_feature	6908	7031	.	-	.	ID=id-NZ_APAH01000196.1:6908..7031;Dbxref=RFAM:RF01859;Note=Phe leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_APAH01000196.1	RefSeq	gene	6982	7026	.	-	.	ID=gene-CFSAN001082_RS48245;Name=pheM;gbkey=Gene;gene=pheM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48245
NZ_APAH01000196.1	Protein Homology	CDS	6982	7026	.	-	0	ID=cds-WP_001386830.1;Parent=gene-CFSAN001082_RS48245;Dbxref=GenBank:WP_001386830.1;Name=WP_001386830.1;Ontology_term=GO:0031556;gbkey=CDS;gene=pheM;go_process=transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310449.1;locus_tag=CFSAN001082_RS48245;product=pheST operon leader peptide PheM;protein_id=WP_001386830.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	7147	7503	.	-	.	ID=gene-CFSAN001082_RS33815;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33815;old_locus_tag=CFSAN001082_09988
NZ_APAH01000196.1	Protein Homology	CDS	7147	7503	.	-	0	ID=cds-WP_000124850.1;Parent=gene-CFSAN001082_RS33815;Dbxref=GenBank:WP_000124850.1;Name=WP_000124850.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplT;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310450.1;locus_tag=CFSAN001082_RS33815;product=50S ribosomal protein L20;protein_id=WP_000124850.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	7554	7751	.	-	.	ID=gene-CFSAN001082_RS33820;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33820;old_locus_tag=CFSAN001082_09993
NZ_APAH01000196.1	Protein Homology	CDS	7554	7751	.	-	0	ID=cds-WP_001124225.1;Parent=gene-CFSAN001082_RS33820;Dbxref=GenBank:WP_001124225.1;Name=WP_001124225.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006708231.1;locus_tag=CFSAN001082_RS33820;product=50S ribosomal protein L35;protein_id=WP_001124225.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	7847	8389	.	-	.	ID=gene-CFSAN001082_RS0123370;Name=infC;gbkey=Gene;gene=infC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123370;old_locus_tag=CFSAN001082_09998
NZ_APAH01000196.1	Protein Homology	CDS	7847	8389	.	-	0	ID=cds-WP_001574431.1;Parent=gene-CFSAN001082_RS0123370;Dbxref=GenBank:WP_001574431.1;Name=WP_001574431.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infC;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310452.1;locus_tag=CFSAN001082_RS0123370;product=translation initiation factor IF-3;protein_id=WP_001574431.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	8393	10321	.	-	.	ID=gene-CFSAN001082_RS33825;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33825;old_locus_tag=CFSAN001082_10003
NZ_APAH01000196.1	Protein Homology	CDS	8393	10321	.	-	0	ID=cds-WP_001144226.1;Parent=gene-CFSAN001082_RS33825;Dbxref=GenBank:WP_001144226.1;Name=WP_001144226.1;Ontology_term=GO:0006435,GO:0004829,GO:0005524,GO:0005737;gbkey=CDS;gene=thrS;go_component=cytoplasm|0005737||IEA;go_function=threonine-tRNA ligase activity|0004829||IEA,ATP binding|0005524||IEA;go_process=threonyl-tRNA aminoacylation|0006435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006894721.1;locus_tag=CFSAN001082_RS33825;product=threonine--tRNA ligase;protein_id=WP_001144226.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	10654	11922	.	-	.	ID=gene-CFSAN001082_RS33830;Name=CFSAN001082_RS33830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33830;old_locus_tag=CFSAN001082_10008
NZ_APAH01000196.1	Protein Homology	CDS	10654	11922	.	-	0	ID=cds-WP_023254250.1;Parent=gene-CFSAN001082_RS33830;Dbxref=GenBank:WP_023254250.1;Name=WP_023254250.1;Ontology_term=GO:0006974,GO:0009432,GO:0019985,GO:0042276,GO:0003684,GO:0003887;gbkey=CDS;go_function=damaged DNA binding|0003684||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA damage response|0006974||IEA,SOS response|0009432||IEA,translesion synthesis|0019985||IEA,error-prone translesion synthesis|0042276||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460948.1;locus_tag=CFSAN001082_RS33830;product=Y-family DNA polymerase;protein_id=WP_023254250.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	11925	12344	.	-	.	ID=gene-CFSAN001082_RS33835;Name=CFSAN001082_RS33835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33835;old_locus_tag=CFSAN001082_10013
NZ_APAH01000196.1	Protein Homology	CDS	11925	12344	.	-	0	ID=cds-WP_023194404.1;Parent=gene-CFSAN001082_RS33835;Dbxref=GenBank:WP_023194404.1;Name=WP_023194404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460949.1;locus_tag=CFSAN001082_RS33835;product=translesion error-prone DNA polymerase V autoproteolytic subunit;protein_id=WP_023194404.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	12581	13885	.	-	.	ID=gene-CFSAN001082_RS33840;Name=CFSAN001082_RS33840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33840;old_locus_tag=CFSAN001082_10018
NZ_APAH01000196.1	Protein Homology	CDS	12581	13885	.	-	0	ID=cds-WP_023254251.1;Parent=gene-CFSAN001082_RS33840;Dbxref=GenBank:WP_023254251.1;Name=WP_023254251.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016050286.1;locus_tag=CFSAN001082_RS33840;product=hypothetical protein;protein_id=WP_023254251.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	13895	14854	.	-	.	ID=gene-CFSAN001082_RS33845;Name=CFSAN001082_RS33845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33845;old_locus_tag=CFSAN001082_10023
NZ_APAH01000196.1	Protein Homology	CDS	13895	14854	.	-	0	ID=cds-WP_023234682.1;Parent=gene-CFSAN001082_RS33845;Dbxref=GenBank:WP_023234682.1;Name=WP_023234682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835813.1;locus_tag=CFSAN001082_RS33845;product=DUF6453 family protein;protein_id=WP_023234682.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	14863	18033	.	-	.	ID=gene-CFSAN001082_RS33850;Name=CFSAN001082_RS33850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33850;old_locus_tag=CFSAN001082_10028
NZ_APAH01000196.1	Protein Homology	CDS	14863	18033	.	-	0	ID=cds-WP_024150277.1;Parent=gene-CFSAN001082_RS33850;Dbxref=GenBank:WP_024150277.1;Name=WP_024150277.1;Ontology_term=GO:0019062,GO:0046813,GO:0098003,GO:0098015;gbkey=CDS;go_component=virus tail|0098015||IEA;go_process=virion attachment to host cell|0019062||IEA,receptor-mediated virion attachment to host cell|0046813||IEA,viral tail assembly|0098003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835556.1;locus_tag=CFSAN001082_RS33850;product=host specificity protein J;protein_id=WP_024150277.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	18078	18632	.	-	.	ID=gene-CFSAN001082_RS33855;Name=CFSAN001082_RS33855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33855;old_locus_tag=CFSAN001082_10033
NZ_APAH01000196.1	Protein Homology	CDS	18078	18632	.	-	0	ID=cds-WP_024150278.1;Parent=gene-CFSAN001082_RS33855;Dbxref=GenBank:WP_024150278.1;Name=WP_024150278.1;Ontology_term=GO:0004519;gbkey=CDS;go_function=endonuclease activity|0004519||IEA;inference=COORDINATES: protein motif:HMM:NF024784.6;locus_tag=CFSAN001082_RS33855;product=HNH endonuclease signature motif containing protein;protein_id=WP_024150278.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	18731	19258	.	-	.	ID=gene-CFSAN001082_RS0123380;Name=CFSAN001082_RS0123380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123380;old_locus_tag=CFSAN001082_10038
NZ_APAH01000196.1	Protein Homology	CDS	18731	19258	.	-	0	ID=cds-WP_031612773.1;Parent=gene-CFSAN001082_RS0123380;Dbxref=GenBank:WP_031612773.1;Name=WP_031612773.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016062821.1;locus_tag=CFSAN001082_RS0123380;product=tail assembly protein;protein_id=WP_031612773.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	19201	19920	.	-	.	ID=gene-CFSAN001082_RS33860;Name=CFSAN001082_RS33860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33860;old_locus_tag=CFSAN001082_10043
NZ_APAH01000196.1	Protein Homology	CDS	19201	19920	.	-	0	ID=cds-WP_023254256.1;Parent=gene-CFSAN001082_RS33860;Dbxref=GenBank:WP_023254256.1;Name=WP_023254256.1;Ontology_term=GO:0006508,GO:0008234,GO:0008235,GO:0008270;gbkey=CDS;go_function=cysteine-type peptidase activity|0008234||IEA,metalloexopeptidase activity|0008235||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015976798.1;locus_tag=CFSAN001082_RS33860;product=C40 family peptidase;protein_id=WP_023254256.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	19920	20624	.	-	.	ID=gene-CFSAN001082_RS33865;Name=CFSAN001082_RS33865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33865;old_locus_tag=CFSAN001082_10048
NZ_APAH01000196.1	Protein Homology	CDS	19920	20624	.	-	0	ID=cds-WP_024150280.1;Parent=gene-CFSAN001082_RS33865;Dbxref=GenBank:WP_024150280.1;Name=WP_024150280.1;Ontology_term=GO:0046718,GO:0051536,GO:0030430;gbkey=CDS;go_component=host cell cytoplasm|0030430||IEA;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=symbiont entry into host cell|0046718||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017384990.1;locus_tag=CFSAN001082_RS33865;product=phage minor tail protein L;protein_id=WP_024150280.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	20790	21005	.	+	.	ID=gene-CFSAN001082_RS0123385;Name=CFSAN001082_RS0123385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123385
NZ_APAH01000196.1	Protein Homology	CDS	20790	21005	.	+	0	ID=cds-WP_001650217.1;Parent=gene-CFSAN001082_RS0123385;Dbxref=GenBank:WP_001650217.1;Name=WP_001650217.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001650217.1;locus_tag=CFSAN001082_RS0123385;product=hypothetical protein;protein_id=WP_001650217.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	20974	21180	.	-	.	ID=gene-CFSAN001082_RS33870;Name=CFSAN001082_RS33870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33870;old_locus_tag=CFSAN001082_10053
NZ_APAH01000196.1	Protein Homology	CDS	20974	21180	.	-	0	ID=cds-WP_023254258.1;Parent=gene-CFSAN001082_RS33870;Dbxref=GenBank:WP_023254258.1;Name=WP_023254258.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016062819.1;locus_tag=CFSAN001082_RS33870;product=hypothetical protein;protein_id=WP_023254258.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	21191	21538	.	-	.	ID=gene-CFSAN001082_RS33875;Name=CFSAN001082_RS33875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33875;old_locus_tag=CFSAN001082_10058
NZ_APAH01000196.1	Protein Homology	CDS	21191	21538	.	-	0	ID=cds-WP_023254259.1;Parent=gene-CFSAN001082_RS33875;Dbxref=GenBank:WP_023254259.1;Name=WP_023254259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747799.1;locus_tag=CFSAN001082_RS33875;product=phage tail protein;protein_id=WP_023254259.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	21541	23781	.	-	.	ID=gene-CFSAN001082_RS33880;Name=CFSAN001082_RS33880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33880;old_locus_tag=CFSAN001082_10063
NZ_APAH01000196.1	Protein Homology	CDS	21541	23781	.	-	0	ID=cds-WP_023254260.1;Parent=gene-CFSAN001082_RS33880;Dbxref=GenBank:WP_023254260.1;Name=WP_023254260.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000829990.1;locus_tag=CFSAN001082_RS33880;product=tape measure protein;protein_id=WP_023254260.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	23821	24207	.	-	.	ID=gene-CFSAN001082_RS33885;Name=CFSAN001082_RS33885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33885;old_locus_tag=CFSAN001082_10068
NZ_APAH01000196.1	Protein Homology	CDS	23821	24207	.	-	0	ID=cds-WP_016050276.1;Parent=gene-CFSAN001082_RS33885;Dbxref=GenBank:WP_016050276.1;Name=WP_016050276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016050276.1;locus_tag=CFSAN001082_RS33885;product=hypothetical protein;protein_id=WP_016050276.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	24313	25287	.	-	.	ID=gene-CFSAN001082_RS33890;Name=CFSAN001082_RS33890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33890;old_locus_tag=CFSAN001082_10073
NZ_APAH01000196.1	Protein Homology	CDS	24313	25287	.	-	0	ID=cds-WP_023254261.1;Parent=gene-CFSAN001082_RS33890;Dbxref=GenBank:WP_023254261.1;Name=WP_023254261.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016050275.1;locus_tag=CFSAN001082_RS33890;product=phage antirepressor N-terminal domain-containing protein;protein_id=WP_023254261.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	25280	25450	.	-	.	ID=gene-CFSAN001082_RS33895;Name=CFSAN001082_RS33895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33895;old_locus_tag=CFSAN001082_10078
NZ_APAH01000196.1	Protein Homology	CDS	25280	25450	.	-	0	ID=cds-WP_000543813.1;Parent=gene-CFSAN001082_RS33895;Dbxref=GenBank:WP_000543813.1;Name=WP_000543813.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000543813.1;locus_tag=CFSAN001082_RS33895;product=Arc family DNA-binding protein;protein_id=WP_000543813.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	25566	25943	.	+	.	ID=gene-CFSAN001082_RS33900;Name=CFSAN001082_RS33900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33900;old_locus_tag=CFSAN001082_10083
NZ_APAH01000196.1	Protein Homology	CDS	25566	25943	.	+	0	ID=cds-WP_000033147.1;Parent=gene-CFSAN001082_RS33900;Dbxref=GenBank:WP_000033147.1;Name=WP_000033147.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000033148.1;locus_tag=CFSAN001082_RS33900;product=Arc family DNA-binding protein;protein_id=WP_000033147.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	26163	26531	.	+	.	ID=gene-CFSAN001082_RS33905;Name=CFSAN001082_RS33905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33905;old_locus_tag=CFSAN001082_10088
NZ_APAH01000196.1	Protein Homology	CDS	26163	26531	.	+	0	ID=cds-WP_000360561.1;Parent=gene-CFSAN001082_RS33905;Dbxref=GenBank:WP_000360561.1;Name=WP_000360561.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001260076.1;locus_tag=CFSAN001082_RS33905;product=hypothetical protein;protein_id=WP_000360561.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	26553	27281	.	-	.	ID=gene-CFSAN001082_RS33910;Name=CFSAN001082_RS33910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33910;old_locus_tag=CFSAN001082_10093
NZ_APAH01000196.1	Protein Homology	CDS	26553	27281	.	-	0	ID=cds-WP_000065273.1;Parent=gene-CFSAN001082_RS33910;Dbxref=GenBank:WP_000065273.1;Name=WP_000065273.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000065273.1;locus_tag=CFSAN001082_RS33910;product=KilA-N domain-containing protein;protein_id=WP_000065273.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	27503	28156	.	-	.	ID=gene-CFSAN001082_RS33915;Name=CFSAN001082_RS33915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33915;old_locus_tag=CFSAN001082_10098
NZ_APAH01000196.1	Protein Homology	CDS	27503	28156	.	-	0	ID=cds-WP_000644470.1;Parent=gene-CFSAN001082_RS33915;Dbxref=GenBank:WP_000644470.1;Name=WP_000644470.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016050273.1;locus_tag=CFSAN001082_RS33915;product=DUF6246 family protein;protein_id=WP_000644470.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	28202	28939	.	-	.	ID=gene-CFSAN001082_RS33920;Name=CFSAN001082_RS33920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33920;old_locus_tag=CFSAN001082_10103
NZ_APAH01000196.1	Protein Homology	CDS	28202	28939	.	-	0	ID=cds-WP_023254262.1;Parent=gene-CFSAN001082_RS33920;Dbxref=GenBank:WP_023254262.1;Name=WP_023254262.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000742044.1;locus_tag=CFSAN001082_RS33920;product=phage tail tube protein;protein_id=WP_023254262.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	28955	29341	.	-	.	ID=gene-CFSAN001082_RS33925;Name=CFSAN001082_RS33925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33925;old_locus_tag=CFSAN001082_10108
NZ_APAH01000196.1	Protein Homology	CDS	28955	29341	.	-	0	ID=cds-WP_000198517.1;Parent=gene-CFSAN001082_RS33925;Dbxref=GenBank:WP_000198517.1;Name=WP_000198517.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000198520.1;locus_tag=CFSAN001082_RS33925;product=phage tail termination protein;protein_id=WP_000198517.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	29338	29733	.	-	.	ID=gene-CFSAN001082_RS33930;Name=CFSAN001082_RS33930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33930;old_locus_tag=CFSAN001082_10113
NZ_APAH01000196.1	Protein Homology	CDS	29338	29733	.	-	0	ID=cds-WP_001144355.1;Parent=gene-CFSAN001082_RS33930;Dbxref=GenBank:WP_001144355.1;Name=WP_001144355.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001144356.1;locus_tag=CFSAN001082_RS33930;product=hypothetical protein;protein_id=WP_001144355.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	29741	30103	.	-	.	ID=gene-CFSAN001082_RS33935;Name=CFSAN001082_RS33935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33935;old_locus_tag=CFSAN001082_10118
NZ_APAH01000196.1	Protein Homology	CDS	29741	30103	.	-	0	ID=cds-WP_000117091.1;Parent=gene-CFSAN001082_RS33935;Dbxref=GenBank:WP_000117091.1;Name=WP_000117091.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000117091.1;locus_tag=CFSAN001082_RS33935;product=hypothetical protein;protein_id=WP_000117091.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	30087	30275	.	-	.	ID=gene-CFSAN001082_RS48875;Name=CFSAN001082_RS48875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48875;old_locus_tag=CFSAN001082_10123
NZ_APAH01000196.1	Protein Homology	CDS	30087	30275	.	-	0	ID=cds-WP_023254263.1;Parent=gene-CFSAN001082_RS48875;Dbxref=GenBank:WP_023254263.1;Name=WP_023254263.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001174016.1;locus_tag=CFSAN001082_RS48875;product=hypothetical protein;protein_id=WP_023254263.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	30275	30676	.	-	.	ID=gene-CFSAN001082_RS33945;Name=CFSAN001082_RS33945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33945;old_locus_tag=CFSAN001082_10128
NZ_APAH01000196.1	Protein Homology	CDS	30275	30676	.	-	0	ID=cds-WP_000633373.1;Parent=gene-CFSAN001082_RS33945;Dbxref=GenBank:WP_000633373.1;Name=WP_000633373.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016050270.1;locus_tag=CFSAN001082_RS33945;product=DUF7370 family protein;protein_id=WP_000633373.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	30728	30907	.	-	.	ID=gene-CFSAN001082_RS33950;Name=CFSAN001082_RS33950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33950;old_locus_tag=CFSAN001082_10133
NZ_APAH01000196.1	Protein Homology	CDS	30728	30907	.	-	0	ID=cds-WP_001151798.1;Parent=gene-CFSAN001082_RS33950;Dbxref=GenBank:WP_001151798.1;Name=WP_001151798.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001151800.1;locus_tag=CFSAN001082_RS33950;product=hypothetical protein;protein_id=WP_001151798.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	30917	31993	.	-	.	ID=gene-CFSAN001082_RS33955;Name=CFSAN001082_RS33955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33955;old_locus_tag=CFSAN001082_10138
NZ_APAH01000196.1	Protein Homology	CDS	30917	31993	.	-	0	ID=cds-WP_000273927.1;Parent=gene-CFSAN001082_RS33955;Dbxref=GenBank:WP_000273927.1;Name=WP_000273927.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747836.1;locus_tag=CFSAN001082_RS33955;product=major capsid protein;protein_id=WP_000273927.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	32011	32460	.	-	.	ID=gene-CFSAN001082_RS33960;Name=CFSAN001082_RS33960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33960;old_locus_tag=CFSAN001082_10143
NZ_APAH01000196.1	Protein Homology	CDS	32011	32460	.	-	0	ID=cds-WP_023254264.1;Parent=gene-CFSAN001082_RS33960;Dbxref=GenBank:WP_023254264.1;Name=WP_023254264.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000092737.1;locus_tag=CFSAN001082_RS33960;product=phage cement protein;protein_id=WP_023254264.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	32473	33738	.	-	.	ID=gene-CFSAN001082_RS33965;Name=CFSAN001082_RS33965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33965;old_locus_tag=CFSAN001082_10148
NZ_APAH01000196.1	Protein Homology	CDS	32473	33738	.	-	0	ID=cds-WP_023254265.1;Parent=gene-CFSAN001082_RS33965;Dbxref=GenBank:WP_023254265.1;Name=WP_023254265.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004223282.1;locus_tag=CFSAN001082_RS33965;product=hypothetical protein;protein_id=WP_023254265.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	33741	34667	.	-	.	ID=gene-CFSAN001082_RS33970;Name=CFSAN001082_RS33970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33970;old_locus_tag=CFSAN001082_10153
NZ_APAH01000196.1	Protein Homology	CDS	33741	34667	.	-	0	ID=cds-WP_023254266.1;Parent=gene-CFSAN001082_RS33970;Dbxref=GenBank:WP_023254266.1;Name=WP_023254266.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013095980.1;locus_tag=CFSAN001082_RS33970;product=phage minor head protein;protein_id=WP_023254266.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	34627	35976	.	-	.	ID=gene-CFSAN001082_RS33975;Name=CFSAN001082_RS33975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33975;old_locus_tag=CFSAN001082_10158
NZ_APAH01000196.1	Protein Homology	CDS	34627	35976	.	-	0	ID=cds-WP_023254267.1;Parent=gene-CFSAN001082_RS33975;Dbxref=GenBank:WP_023254267.1;Name=WP_023254267.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000130173.1;locus_tag=CFSAN001082_RS33975;product=anti-CBASS protein Acb1 family protein;protein_id=WP_023254267.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	36217	36483	.	-	.	ID=gene-CFSAN001082_RS33980;Name=CFSAN001082_RS33980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33980;old_locus_tag=CFSAN001082_10163
NZ_APAH01000196.1	Protein Homology	CDS	36217	36483	.	-	0	ID=cds-WP_023254268.1;Parent=gene-CFSAN001082_RS33980;Dbxref=GenBank:WP_023254268.1;Name=WP_023254268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000623181.1;locus_tag=CFSAN001082_RS33980;product=hypothetical protein;protein_id=WP_023254268.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	36545	37864	.	-	.	ID=gene-CFSAN001082_RS33985;Name=CFSAN001082_RS33985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33985;old_locus_tag=CFSAN001082_10168
NZ_APAH01000196.1	Protein Homology	CDS	36545	37864	.	-	0	ID=cds-WP_023254269.1;Parent=gene-CFSAN001082_RS33985;Dbxref=GenBank:WP_023254269.1;Name=WP_023254269.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015976779.1;locus_tag=CFSAN001082_RS33985;product=PBSX family phage terminase large subunit;protein_id=WP_023254269.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	37848	38279	.	-	.	ID=gene-CFSAN001082_RS33990;Name=CFSAN001082_RS33990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33990;old_locus_tag=CFSAN001082_10173
NZ_APAH01000196.1	Protein Homology	CDS	37848	38279	.	-	0	ID=cds-WP_000147264.1;Parent=gene-CFSAN001082_RS33990;Dbxref=GenBank:WP_000147264.1;Name=WP_000147264.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000147265.1;locus_tag=CFSAN001082_RS33990;product=terminase small subunit;protein_id=WP_000147264.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	38744	39265	.	-	.	ID=gene-CFSAN001082_RS33995;Name=CFSAN001082_RS33995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS33995;old_locus_tag=CFSAN001082_10178
NZ_APAH01000196.1	Protein Homology	CDS	38744	39265	.	-	0	ID=cds-WP_001028468.1;Parent=gene-CFSAN001082_RS33995;Dbxref=GenBank:WP_001028468.1;Name=WP_001028468.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001723433.1;locus_tag=CFSAN001082_RS33995;product=KilA-N domain-containing protein;protein_id=WP_001028468.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	39470	39622	.	-	.	ID=gene-CFSAN001082_RS48255;Name=CFSAN001082_RS48255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48255;old_locus_tag=CFSAN001082_10183
NZ_APAH01000196.1	Protein Homology	CDS	39470	39622	.	-	0	ID=cds-WP_001139680.1;Parent=gene-CFSAN001082_RS48255;Dbxref=GenBank:WP_001139680.1;Name=WP_001139680.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308849.1;locus_tag=CFSAN001082_RS48255;product=hypothetical protein;protein_id=WP_001139680.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	39610	40059	.	-	.	ID=gene-CFSAN001082_RS48260;Name=CFSAN001082_RS48260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48260;old_locus_tag=CFSAN001082_10188
NZ_APAH01000196.1	Protein Homology	CDS	39610	40059	.	-	0	ID=cds-WP_031612777.1;Parent=gene-CFSAN001082_RS48260;Dbxref=GenBank:WP_031612777.1;Name=WP_031612777.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001540671.1;locus_tag=CFSAN001082_RS48260;product=lysis protein;protein_id=WP_031612777.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	40077	40514	.	-	.	ID=gene-CFSAN001082_RS34005;Name=CFSAN001082_RS34005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34005;old_locus_tag=CFSAN001082_10193
NZ_APAH01000196.1	Protein Homology	CDS	40077	40514	.	-	0	ID=cds-WP_023254271.1;Parent=gene-CFSAN001082_RS34005;Dbxref=GenBank:WP_023254271.1;Name=WP_023254271.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001167369.1;locus_tag=CFSAN001082_RS34005;product=lysozyme;protein_id=WP_023254271.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	40498	40824	.	-	.	ID=gene-CFSAN001082_RS34010;Name=CFSAN001082_RS34010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34010;old_locus_tag=CFSAN001082_10198
NZ_APAH01000196.1	Protein Homology	CDS	40498	40824	.	-	0	ID=cds-WP_000738703.1;Parent=gene-CFSAN001082_RS34010;Dbxref=GenBank:WP_000738703.1;Name=WP_000738703.1;Ontology_term=GO:0019835;gbkey=CDS;go_process=cytolysis|0019835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000738844.1;locus_tag=CFSAN001082_RS34010;product=phage holin%2C lambda family;protein_id=WP_000738703.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	41249	42022	.	-	.	ID=gene-CFSAN001082_RS34015;Name=CFSAN001082_RS34015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34015;old_locus_tag=CFSAN001082_10203
NZ_APAH01000196.1	Protein Homology	CDS	41249	42022	.	-	0	ID=cds-WP_001047565.1;Parent=gene-CFSAN001082_RS34015;Dbxref=GenBank:WP_001047565.1;Name=WP_001047565.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001047566.1;locus_tag=CFSAN001082_RS34015;product=antitermination protein;protein_id=WP_001047565.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	42019	42198	.	-	.	ID=gene-CFSAN001082_RS34020;Name=CFSAN001082_RS34020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34020;old_locus_tag=CFSAN001082_10208
NZ_APAH01000196.1	Protein Homology	CDS	42019	42198	.	-	0	ID=cds-WP_023254272.1;Parent=gene-CFSAN001082_RS34020;Dbxref=GenBank:WP_023254272.1;Name=WP_023254272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016048830.1;locus_tag=CFSAN001082_RS34020;product=hypothetical protein;protein_id=WP_023254272.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	42179	42382	.	-	.	ID=gene-CFSAN001082_RS46985;Name=CFSAN001082_RS46985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46985;old_locus_tag=CFSAN001082_10213
NZ_APAH01000196.1	Protein Homology	CDS	42179	42382	.	-	0	ID=cds-WP_001750250.1;Parent=gene-CFSAN001082_RS46985;Dbxref=GenBank:WP_001750250.1;Name=WP_001750250.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000149880.1;locus_tag=CFSAN001082_RS46985;product=phage NinH family protein;protein_id=WP_001750250.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	42379	42990	.	-	.	ID=gene-CFSAN001082_RS34025;Name=CFSAN001082_RS34025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34025;old_locus_tag=CFSAN001082_10218
NZ_APAH01000196.1	Protein Homology	CDS	42379	42990	.	-	0	ID=cds-WP_023241104.1;Parent=gene-CFSAN001082_RS34025;Dbxref=GenBank:WP_023241104.1;Name=WP_023241104.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001597929.1;locus_tag=CFSAN001082_RS34025;product=recombination protein NinG;protein_id=WP_023241104.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	42983	43159	.	-	.	ID=gene-CFSAN001082_RS34030;Name=CFSAN001082_RS34030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34030;old_locus_tag=CFSAN001082_10223
NZ_APAH01000196.1	Protein Homology	CDS	42983	43159	.	-	0	ID=cds-WP_000950972.1;Parent=gene-CFSAN001082_RS34030;Dbxref=GenBank:WP_000950972.1;Name=WP_000950972.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000950944.1;locus_tag=CFSAN001082_RS34030;product=protein NinF;protein_id=WP_000950972.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	43152	43493	.	-	.	ID=gene-CFSAN001082_RS34035;Name=CFSAN001082_RS34035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34035;old_locus_tag=CFSAN001082_10228
NZ_APAH01000196.1	Protein Homology	CDS	43152	43493	.	-	0	ID=cds-WP_001532927.1;Parent=gene-CFSAN001082_RS34035;Dbxref=GenBank:WP_001532927.1;Name=WP_001532927.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001673929.1;locus_tag=CFSAN001082_RS34035;product=phage protein NinX family protein;protein_id=WP_001532927.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	43496	43672	.	-	.	ID=gene-CFSAN001082_RS46990;Name=CFSAN001082_RS46990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46990;old_locus_tag=CFSAN001082_10233
NZ_APAH01000196.1	Protein Homology	CDS	43496	43672	.	-	0	ID=cds-WP_023254273.1;Parent=gene-CFSAN001082_RS46990;Dbxref=GenBank:WP_023254273.1;Name=WP_023254273.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311007.1;locus_tag=CFSAN001082_RS46990;product=NinE family protein;protein_id=WP_023254273.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	43639	43830	.	-	.	ID=gene-CFSAN001082_RS46995;Name=ninD;gbkey=Gene;gene=ninD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46995
NZ_APAH01000196.1	Protein Homology	CDS	43639	43830	.	-	0	ID=cds-WP_337587974.1;Parent=gene-CFSAN001082_RS46995;Dbxref=GenBank:WP_337587974.1;Name=WP_337587974.1;gbkey=CDS;gene=ninD;inference=COORDINATES: protein motif:HMM:NF036649.6;locus_tag=CFSAN001082_RS46995;product=protein NinD;protein_id=WP_337587974.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	43809	44399	.	-	.	ID=gene-CFSAN001082_RS34040;Name=CFSAN001082_RS34040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34040;old_locus_tag=CFSAN001082_10238
NZ_APAH01000196.1	Protein Homology	CDS	43809	44399	.	-	0	ID=cds-WP_021568427.1;Parent=gene-CFSAN001082_RS34040;Dbxref=GenBank:WP_021568427.1;Name=WP_021568427.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001569072.1;locus_tag=CFSAN001082_RS34040;product=MT-A70 family methyltransferase;protein_id=WP_021568427.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	44396	44836	.	-	.	ID=gene-CFSAN001082_RS34045;Name=CFSAN001082_RS34045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34045;old_locus_tag=CFSAN001082_10243
NZ_APAH01000196.1	Protein Homology	CDS	44396	44836	.	-	0	ID=cds-WP_023254274.1;Parent=gene-CFSAN001082_RS34045;Dbxref=GenBank:WP_023254274.1;Name=WP_023254274.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001513013.1;locus_tag=CFSAN001082_RS34045;product=recombination protein NinB;protein_id=WP_023254274.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	44910	45179	.	-	.	ID=gene-CFSAN001082_RS34050;Name=CFSAN001082_RS34050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34050;old_locus_tag=CFSAN001082_10253
NZ_APAH01000196.1	Protein Homology	CDS	44910	45179	.	-	0	ID=cds-WP_001036039.1;Parent=gene-CFSAN001082_RS34050;Dbxref=GenBank:WP_001036039.1;Name=WP_001036039.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309218.1;locus_tag=CFSAN001082_RS34050;product=hypothetical protein;protein_id=WP_001036039.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	45176	46552	.	-	.	ID=gene-CFSAN001082_RS34055;Name=CFSAN001082_RS34055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34055;old_locus_tag=CFSAN001082_10258
NZ_APAH01000196.1	Protein Homology	CDS	45176	46552	.	-	0	ID=cds-WP_023254275.1;Parent=gene-CFSAN001082_RS34055;Dbxref=GenBank:WP_023254275.1;Name=WP_023254275.1;Ontology_term=GO:0006269,GO:0003677,GO:0003678,GO:0005524,GO:0016887;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=DNA replication%2C synthesis of primer|0006269||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001248398.1;locus_tag=CFSAN001082_RS34055;product=replicative DNA helicase;protein_id=WP_023254275.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	46549	47382	.	-	.	ID=gene-CFSAN001082_RS34060;Name=CFSAN001082_RS34060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34060;old_locus_tag=CFSAN001082_10263
NZ_APAH01000196.1	Protein Homology	CDS	46549	47382	.	-	0	ID=cds-WP_000067076.1;Parent=gene-CFSAN001082_RS34060;Dbxref=GenBank:WP_000067076.1;Name=WP_000067076.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001531205.1;locus_tag=CFSAN001082_RS34060;product=replication protein;protein_id=WP_000067076.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	47375	47521	.	-	.	ID=gene-CFSAN001082_RS48265;Name=CFSAN001082_RS48265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48265;old_locus_tag=CFSAN001082_10268
NZ_APAH01000196.1	Protein Homology	CDS	47375	47521	.	-	0	ID=cds-WP_001125981.1;Parent=gene-CFSAN001082_RS48265;Dbxref=GenBank:WP_001125981.1;Name=WP_001125981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309215.1;locus_tag=CFSAN001082_RS48265;product=DUF2740 family protein;protein_id=WP_001125981.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	47556	47834	.	-	.	ID=gene-CFSAN001082_RS34065;Name=CFSAN001082_RS34065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34065;old_locus_tag=CFSAN001082_10273
NZ_APAH01000196.1	Protein Homology	CDS	47556	47834	.	-	0	ID=cds-WP_000424166.1;Parent=gene-CFSAN001082_RS34065;Dbxref=GenBank:WP_000424166.1;Name=WP_000424166.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001177654.1;locus_tag=CFSAN001082_RS34065;product=lambda phage CII family protein;protein_id=WP_000424166.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	47942	48157	.	-	.	ID=gene-CFSAN001082_RS34070;Name=CFSAN001082_RS34070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34070;old_locus_tag=CFSAN001082_10278
NZ_APAH01000196.1	Protein Homology	CDS	47942	48157	.	-	0	ID=cds-WP_000067726.1;Parent=gene-CFSAN001082_RS34070;Dbxref=GenBank:WP_000067726.1;Name=WP_000067726.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000067726.1;locus_tag=CFSAN001082_RS34070;product=helix-turn-helix transcriptional regulator;protein_id=WP_000067726.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	48276	48938	.	+	.	ID=gene-CFSAN001082_RS34075;Name=CFSAN001082_RS34075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34075;old_locus_tag=CFSAN001082_10283
NZ_APAH01000196.1	Protein Homology	CDS	48276	48938	.	+	0	ID=cds-WP_023135942.1;Parent=gene-CFSAN001082_RS34075;Dbxref=GenBank:WP_023135942.1;Name=WP_023135942.1;Ontology_term=GO:0045892,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012125662.1;locus_tag=CFSAN001082_RS34075;product=LexA family protein;protein_id=WP_023135942.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	49180	49260	.	+	.	ID=gene-CFSAN001082_RS34080;Name=CFSAN001082_RS34080;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS34080;old_locus_tag=CFSAN001082_t10305
NZ_APAH01000196.1	tRNAscan-SE	tRNA	49180	49260	.	+	.	ID=rna-CFSAN001082_RS34080;Parent=gene-CFSAN001082_RS34080;anticodon=(pos:49220..49222);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS34080;product=tRNA-Gly
NZ_APAH01000196.1	tRNAscan-SE	exon	49180	49260	.	+	.	ID=exon-CFSAN001082_RS34080-1;Parent=rna-CFSAN001082_RS34080;anticodon=(pos:49220..49222);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS34080;product=tRNA-Gly
NZ_APAH01000196.1	RefSeq	gene	49289	49624	.	+	.	ID=gene-CFSAN001082_RS34085;Name=CFSAN001082_RS34085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34085;old_locus_tag=CFSAN001082_10288
NZ_APAH01000196.1	Protein Homology	CDS	49289	49624	.	+	0	ID=cds-WP_023254276.1;Parent=gene-CFSAN001082_RS34085;Dbxref=GenBank:WP_023254276.1;Name=WP_023254276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000216177.1;locus_tag=CFSAN001082_RS34085;product=hypothetical protein;protein_id=WP_023254276.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	49703	49897	.	+	.	ID=gene-CFSAN001082_RS34090;Name=CFSAN001082_RS34090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34090;old_locus_tag=CFSAN001082_10293
NZ_APAH01000196.1	Protein Homology	CDS	49703	49897	.	+	0	ID=cds-WP_000213981.1;Parent=gene-CFSAN001082_RS34090;Dbxref=GenBank:WP_000213981.1;Name=WP_000213981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000213981.1;locus_tag=CFSAN001082_RS34090;product=antirestriction Ral family protein;protein_id=WP_000213981.1;transl_table=11
NZ_APAH01000196.1	RefSeq	gene	50004	50265	.	+	.	ID=gene-CFSAN001082_RS47000;Name=CFSAN001082_RS47000;end_range=50265,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47000;old_locus_tag=CFSAN001082_10298;partial=true
NZ_APAH01000196.1	Protein Homology	CDS	50004	50265	.	+	0	ID=cds-WP_023254277.1;Parent=gene-CFSAN001082_RS47000;Dbxref=GenBank:WP_023254277.1;Name=WP_023254277.1;end_range=50265,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001083253.1;locus_tag=CFSAN001082_RS47000;partial=true;product=HNH endonuclease;protein_id=WP_023254277.1;transl_table=11
##sequence-region NZ_APAH01000197.1 1 755
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000197.1	RefSeq	region	1	755	.	+	.	ID=NZ_APAH01000197.1:1..755;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000197.1	RefSeq	gene	335	755	.	+	.	ID=gene-CFSAN001082_RS34095;Name=CFSAN001082_RS34095;end_range=755,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34095;old_locus_tag=CFSAN001082_10305;partial=true
NZ_APAH01000197.1	Protein Homology	CDS	335	755	.	+	0	ID=cds-WP_023254278.1;Parent=gene-CFSAN001082_RS34095;Dbxref=GenBank:WP_023254278.1;Name=WP_023254278.1;Ontology_term=GO:0006355,GO:0003700;end_range=755,.;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461272.1;locus_tag=CFSAN001082_RS34095;partial=true;product=LysR family transcriptional regulator;protein_id=WP_023254278.1;transl_table=11
##sequence-region NZ_APAH01000198.1 1 1187
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000198.1	RefSeq	region	1	1187	.	+	.	ID=NZ_APAH01000198.1:1..1187;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000198.1	RefSeq	pseudogene	462	634	.	-	.	ID=gene-CFSAN001082_RS49215;Name=CFSAN001082_RS49215;end_range=634,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49215;partial=true;pseudo=true;start_range=.,462
NZ_APAH01000198.1	Protein Homology	CDS	462	634	.	-	0	ID=cds-CFSAN001082_RS49215;Parent=gene-CFSAN001082_RS49215;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=634,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459289.1;locus_tag=CFSAN001082_RS49215;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;start_range=.,462;transl_table=11
NZ_APAH01000198.1	RefSeq	gene	761	1018	.	+	.	ID=gene-CFSAN001082_RS34100;Name=CFSAN001082_RS34100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34100;old_locus_tag=CFSAN001082_10310
NZ_APAH01000198.1	Protein Homology	CDS	761	1018	.	+	0	ID=cds-WP_023254279.1;Parent=gene-CFSAN001082_RS34100;Dbxref=GenBank:WP_023254279.1;Name=WP_023254279.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000994230.1;locus_tag=CFSAN001082_RS34100;product=SymE family type I addiction module toxin;protein_id=WP_023254279.1;transl_table=11
##sequence-region NZ_APAH01000199.1 1 2662
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000199.1	RefSeq	region	1	2662	.	+	.	ID=NZ_APAH01000199.1:1..2662;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000199.1	RefSeq	gene	440	679	.	-	.	ID=gene-CFSAN001082_RS34105;Name=msgA;gbkey=Gene;gene=msgA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34105;old_locus_tag=CFSAN001082_10320
NZ_APAH01000199.1	Protein Homology	CDS	440	679	.	-	0	ID=cds-WP_000497451.1;Parent=gene-CFSAN001082_RS34105;Dbxref=GenBank:WP_000497451.1;Name=WP_000497451.1;gbkey=CDS;gene=msgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460211.1;locus_tag=CFSAN001082_RS34105;product=virulence protein MsgA;protein_id=WP_000497451.1;transl_table=11
NZ_APAH01000199.1	RefSeq	gene	860	1381	.	-	.	ID=gene-CFSAN001082_RS0123415;Name=CFSAN001082_RS0123415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123415
NZ_APAH01000199.1	Protein Homology	CDS	860	1381	.	-	0	ID=cds-WP_024150283.1;Parent=gene-CFSAN001082_RS0123415;Dbxref=GenBank:WP_024150283.1;Name=WP_024150283.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460212.1;locus_tag=CFSAN001082_RS0123415;product=RICIN domain-containing protein;protein_id=WP_024150283.1;transl_table=11
NZ_APAH01000199.1	RefSeq	gene	1798	2010	.	-	.	ID=gene-CFSAN001082_RS34110;Name=cspF;gbkey=Gene;gene=cspF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34110;old_locus_tag=CFSAN001082_10330
NZ_APAH01000199.1	Protein Homology	CDS	1798	2010	.	-	0	ID=cds-WP_001537306.1;Parent=gene-CFSAN001082_RS34110;Dbxref=GenBank:WP_001537306.1;Name=WP_001537306.1;gbkey=CDS;gene=cspF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460213.1;locus_tag=CFSAN001082_RS34110;product=cold shock-like protein CspF;protein_id=WP_001537306.1;transl_table=11
NZ_APAH01000199.1	RefSeq	gene	2142	2405	.	-	.	ID=gene-CFSAN001082_RS0123420;Name=pagD;gbkey=Gene;gene=pagD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123420
NZ_APAH01000199.1	Protein Homology	CDS	2142	2405	.	-	0	ID=cds-WP_024137295.1;Parent=gene-CFSAN001082_RS0123420;Dbxref=GenBank:WP_024137295.1;Name=WP_024137295.1;gbkey=CDS;gene=pagD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460214.1;locus_tag=CFSAN001082_RS0123420;product=virulence protein PagD;protein_id=WP_024137295.1;transl_table=11
##sequence-region NZ_APAH01000200.1 1 401
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000200.1	RefSeq	region	1	401	.	+	.	ID=NZ_APAH01000200.1:1..401;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000200.1	RefSeq	gene	1	401	.	-	.	ID=gene-CFSAN001082_RS34115;Name=CFSAN001082_RS34115;end_range=401,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34115;old_locus_tag=CFSAN001082_10335;partial=true;start_range=.,1
NZ_APAH01000200.1	Protein Homology	CDS	1	401	.	-	1	ID=cds-WP_023254281.1;Parent=gene-CFSAN001082_RS34115;Dbxref=GenBank:WP_023254281.1;Name=WP_023254281.1;end_range=401,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460741.1;locus_tag=CFSAN001082_RS34115;partial=true;product=DUF4427 domain-containing protein;protein_id=WP_023254281.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000201.1 1 995
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000201.1	RefSeq	region	1	995	.	+	.	ID=NZ_APAH01000201.1:1..995;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000201.1	RefSeq	pseudogene	1	513	.	+	.	ID=gene-CFSAN001082_RS34120;Name=CFSAN001082_RS34120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS34120;old_locus_tag=CFSAN001082_10340;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000201.1	Protein Homology	CDS	1	513	.	+	0	ID=cds-CFSAN001082_RS34120;Parent=gene-CFSAN001082_RS34120;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000418442.1;locus_tag=CFSAN001082_RS34120;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000201.1	RefSeq	gene	567	995	.	-	.	ID=gene-CFSAN001082_RS47010;Name=CFSAN001082_RS47010;end_range=995,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47010;old_locus_tag=CFSAN001082_10345;partial=true
NZ_APAH01000201.1	Protein Homology	CDS	567	995	.	-	0	ID=cds-WP_023254283.1;Parent=gene-CFSAN001082_RS47010;Dbxref=GenBank:WP_023254283.1;Name=WP_023254283.1;end_range=995,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000429952.1;locus_tag=CFSAN001082_RS47010;partial=true;product=hypothetical protein;protein_id=WP_023254283.1;transl_table=11
##sequence-region NZ_APAH01000202.1 1 18836
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000202.1	RefSeq	region	1	18836	.	+	.	ID=NZ_APAH01000202.1:1..18836;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000202.1	RefSeq	gene	241	1317	.	+	.	ID=gene-CFSAN001082_RS34125;Name=citC;gbkey=Gene;gene=citC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34125;old_locus_tag=CFSAN001082_10350
NZ_APAH01000202.1	Protein Homology	CDS	241	1317	.	+	0	ID=cds-WP_023254284.1;Parent=gene-CFSAN001082_RS34125;Dbxref=GenBank:WP_023254284.1;Name=WP_023254284.1;Ontology_term=GO:0006101,GO:0008771;gbkey=CDS;gene=citC;go_function=[citrate (pro-3S)-lyase] ligase activity|0008771||IEA;go_process=citrate metabolic process|0006101||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459616.1;locus_tag=CFSAN001082_RS34125;product=[citrate (pro-3S)-lyase] ligase;protein_id=WP_023254284.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	1314	1610	.	+	.	ID=gene-CFSAN001082_RS34130;Name=citD;gbkey=Gene;gene=citD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34130;old_locus_tag=CFSAN001082_10355
NZ_APAH01000202.1	Protein Homology	CDS	1314	1610	.	+	0	ID=cds-WP_000700679.1;Parent=gene-CFSAN001082_RS34130;Dbxref=GenBank:WP_000700679.1;Name=WP_000700679.1;Ontology_term=GO:0006113,GO:0008815,GO:0005737,GO:0009346;gbkey=CDS;gene=citD;go_component=cytoplasm|0005737||IEA,ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459615.1;locus_tag=CFSAN001082_RS34130;product=citrate lyase acyl carrier protein;protein_id=WP_000700679.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	1607	2515	.	+	.	ID=gene-CFSAN001082_RS34135;Name=citE;gbkey=Gene;gene=citE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34135;old_locus_tag=CFSAN001082_10360
NZ_APAH01000202.1	Protein Homology	CDS	1607	2515	.	+	0	ID=cds-WP_000622349.1;Parent=gene-CFSAN001082_RS34135;Dbxref=GenBank:WP_000622349.1;Name=WP_000622349.1;Ontology_term=GO:0006084,GO:0006113,GO:0008815,GO:0005737,GO:0009346;gbkey=CDS;gene=citE;go_component=cytoplasm|0005737||IEA,ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate (pro-3S)-lyase activity|0008815||IEA;go_process=acetyl-CoA metabolic process|0006084||IEA,fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459614.1;locus_tag=CFSAN001082_RS34135;product=citrate (pro-3S)-lyase subunit beta;protein_id=WP_000622349.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	2525	4054	.	+	.	ID=gene-CFSAN001082_RS34140;Name=citF;gbkey=Gene;gene=citF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34140;old_locus_tag=CFSAN001082_10365
NZ_APAH01000202.1	Protein Homology	CDS	2525	4054	.	+	0	ID=cds-WP_000192334.1;Parent=gene-CFSAN001082_RS34140;Dbxref=GenBank:WP_000192334.1;Name=WP_000192334.1;Ontology_term=GO:0006113,GO:0008814,GO:0008815,GO:0009346;gbkey=CDS;gene=citF;go_component=ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate CoA-transferase activity|0008814||IEA,citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459613.1;locus_tag=CFSAN001082_RS34140;product=citrate lyase subunit alpha;protein_id=WP_000192334.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	4058	4609	.	+	.	ID=gene-CFSAN001082_RS34145;Name=citX;gbkey=Gene;gene=citX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34145;old_locus_tag=CFSAN001082_10370
NZ_APAH01000202.1	Protein Homology	CDS	4058	4609	.	+	0	ID=cds-WP_001236063.1;Parent=gene-CFSAN001082_RS34145;Dbxref=GenBank:WP_001236063.1;Name=WP_001236063.1;Ontology_term=GO:0051191,GO:0050519;gbkey=CDS;gene=citX;go_function=holo-citrate lyase synthase activity|0050519||IEA;go_process=prosthetic group biosynthetic process|0051191||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459612.1;locus_tag=CFSAN001082_RS34145;product=citrate lyase holo-[acyl-carrier protein] synthase;protein_id=WP_001236063.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	4581	5477	.	+	.	ID=gene-CFSAN001082_RS34150;Name=citG;gbkey=Gene;gene=citG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34150;old_locus_tag=CFSAN001082_10375
NZ_APAH01000202.1	Protein Homology	CDS	4581	5477	.	+	0	ID=cds-WP_000982655.1;Parent=gene-CFSAN001082_RS34150;Dbxref=GenBank:WP_000982655.1;Name=WP_000982655.1;gbkey=CDS;gene=citG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459611.1;locus_tag=CFSAN001082_RS34150;product=triphosphoribosyl-dephospho-CoA synthase CitG;protein_id=WP_000982655.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	5515	6978	.	+	.	ID=gene-CFSAN001082_RS34155;Name=citT;gbkey=Gene;gene=citT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34155;old_locus_tag=CFSAN001082_10380
NZ_APAH01000202.1	Protein Homology	CDS	5515	6978	.	+	0	ID=cds-WP_000059028.1;Parent=gene-CFSAN001082_RS34155;Dbxref=GenBank:WP_000059028.1;Name=WP_000059028.1;gbkey=CDS;gene=citT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459610.1;locus_tag=CFSAN001082_RS34155;product=citrate/succinate antiporter CitT;protein_id=WP_000059028.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	7088	7894	.	+	.	ID=gene-CFSAN001082_RS34160;Name=rna;gbkey=Gene;gene=rna;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34160;old_locus_tag=CFSAN001082_10385
NZ_APAH01000202.1	Protein Homology	CDS	7088	7894	.	+	0	ID=cds-WP_020898530.1;Parent=gene-CFSAN001082_RS34160;Dbxref=GenBank:WP_020898530.1;Name=WP_020898530.1;gbkey=CDS;gene=rna;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459609.1;locus_tag=CFSAN001082_RS34160;product=ribonuclease I;protein_id=WP_020898530.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	8129	8539	.	+	.	ID=gene-CFSAN001082_RS34165;Name=rnk;gbkey=Gene;gene=rnk;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34165;old_locus_tag=CFSAN001082_10390
NZ_APAH01000202.1	Protein Homology	CDS	8129	8539	.	+	0	ID=cds-WP_000089748.1;Parent=gene-CFSAN001082_RS34165;Dbxref=GenBank:WP_000089748.1;Name=WP_000089748.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=rnk;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459608.1;locus_tag=CFSAN001082_RS34165;product=nucleoside diphosphate kinase regulator;protein_id=WP_000089748.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	8622	9860	.	-	.	ID=gene-CFSAN001082_RS34170;Name=CFSAN001082_RS34170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34170;old_locus_tag=CFSAN001082_10395
NZ_APAH01000202.1	Protein Homology	CDS	8622	9860	.	-	0	ID=cds-WP_000646118.1;Parent=gene-CFSAN001082_RS34170;Dbxref=GenBank:WP_000646118.1;Name=WP_000646118.1;Ontology_term=GO:0008270,GO:0016616,GO:0030554;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,adenyl nucleotide binding|0030554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459607.1;locus_tag=CFSAN001082_RS34170;product=zinc-dependent alcohol dehydrogenase;protein_id=WP_000646118.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	10083	10511	.	+	.	ID=gene-CFSAN001082_RS34175;Name=uspG;gbkey=Gene;gene=uspG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34175;old_locus_tag=CFSAN001082_10400
NZ_APAH01000202.1	Protein Homology	CDS	10083	10511	.	+	0	ID=cds-WP_000278499.1;Parent=gene-CFSAN001082_RS34175;Dbxref=GenBank:WP_000278499.1;Name=WP_000278499.1;gbkey=CDS;gene=uspG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459606.1;locus_tag=CFSAN001082_RS34175;product=universal stress protein UspG;protein_id=WP_000278499.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	10579	11346	.	-	.	ID=gene-CFSAN001082_RS34180;Name=CFSAN001082_RS34180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34180;old_locus_tag=CFSAN001082_10405
NZ_APAH01000202.1	Protein Homology	CDS	10579	11346	.	-	0	ID=cds-WP_000417104.1;Parent=gene-CFSAN001082_RS34180;Dbxref=GenBank:WP_000417104.1;Name=WP_000417104.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459605.1;locus_tag=CFSAN001082_RS34180;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_000417104.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	11346	11903	.	-	.	ID=gene-CFSAN001082_RS34185;Name=CFSAN001082_RS34185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34185;old_locus_tag=CFSAN001082_10410
NZ_APAH01000202.1	Protein Homology	CDS	11346	11903	.	-	0	ID=cds-WP_001250381.1;Parent=gene-CFSAN001082_RS34185;Dbxref=GenBank:WP_001250381.1;Name=WP_001250381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459604.1;locus_tag=CFSAN001082_RS34185;product=4Fe-4S dicluster domain-containing protein;protein_id=WP_001250381.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	11900	14179	.	-	.	ID=gene-CFSAN001082_RS34190;Name=CFSAN001082_RS34190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34190;old_locus_tag=CFSAN001082_10415
NZ_APAH01000202.1	Protein Homology	CDS	11900	14179	.	-	0	ID=cds-WP_000064319.1;Parent=gene-CFSAN001082_RS34190;Dbxref=GenBank:WP_000064319.1;Name=WP_000064319.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459603.1;locus_tag=CFSAN001082_RS34190;product=molybdopterin-dependent oxidoreductase;protein_id=WP_000064319.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	14172	14732	.	-	.	ID=gene-CFSAN001082_RS34195;Name=CFSAN001082_RS34195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34195;old_locus_tag=CFSAN001082_10420
NZ_APAH01000202.1	Protein Homology	CDS	14172	14732	.	-	0	ID=cds-WP_001523344.1;Parent=gene-CFSAN001082_RS34195;Dbxref=GenBank:WP_001523344.1;Name=WP_001523344.1;Ontology_term=GO:0061077;gbkey=CDS;go_process=chaperone-mediated protein folding|0061077||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459602.1;locus_tag=CFSAN001082_RS34195;product=TorD/DmsD family molecular chaperone;protein_id=WP_001523344.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	15065	16630	.	-	.	ID=gene-CFSAN001082_RS34200;Name=ahpF;gbkey=Gene;gene=ahpF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34200;old_locus_tag=CFSAN001082_10425
NZ_APAH01000202.1	Protein Homology	CDS	15065	16630	.	-	0	ID=cds-WP_000887644.1;Parent=gene-CFSAN001082_RS34200;Dbxref=GenBank:WP_000887644.1;Name=WP_000887644.1;Ontology_term=GO:0000302,GO:0008785,GO:0050660,GO:0051287;gbkey=CDS;gene=ahpF;go_function=alkyl hydroperoxide reductase activity|0008785||IEA,flavin adenine dinucleotide binding|0050660||IEA,NAD binding|0051287||IEA;go_process=response to reactive oxygen species|0000302||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459601.1;locus_tag=CFSAN001082_RS34200;product=alkyl hydroperoxide reductase subunit F;protein_id=WP_000887644.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	16872	17435	.	-	.	ID=gene-CFSAN001082_RS34205;Name=ahpC;gbkey=Gene;gene=ahpC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34205;old_locus_tag=CFSAN001082_10430
NZ_APAH01000202.1	Protein Homology	CDS	16872	17435	.	-	0	ID=cds-WP_000052802.1;Parent=gene-CFSAN001082_RS34205;Dbxref=GenBank:WP_000052802.1;Name=WP_000052802.1;Ontology_term=GO:0006979,GO:0102039;gbkey=CDS;gene=ahpC;go_function=NADH-dependent peroxiredoxin activity|0102039||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003858764.1;locus_tag=CFSAN001082_RS34205;product=alkyl hydroperoxide reductase subunit C;protein_id=WP_000052802.1;transl_table=11
NZ_APAH01000202.1	RefSeq	gene	17876	18622	.	+	.	ID=gene-CFSAN001082_RS34210;Name=dsbG;gbkey=Gene;gene=dsbG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34210;old_locus_tag=CFSAN001082_10435
NZ_APAH01000202.1	Protein Homology	CDS	17876	18622	.	+	0	ID=cds-WP_000597128.1;Parent=gene-CFSAN001082_RS34210;Dbxref=GenBank:WP_000597128.1;Name=WP_000597128.1;gbkey=CDS;gene=dsbG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459599.1;locus_tag=CFSAN001082_RS34210;product=thiol:disulfide interchange protein DsbG;protein_id=WP_000597128.1;transl_table=11
##sequence-region NZ_APAH01000203.1 1 11917
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000203.1	RefSeq	region	1	11917	.	+	.	ID=NZ_APAH01000203.1:1..11917;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000203.1	RefSeq	gene	133	3111	.	+	.	ID=gene-CFSAN001082_RS34215;Name=CFSAN001082_RS34215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34215;old_locus_tag=CFSAN001082_10440
NZ_APAH01000203.1	Protein Homology	CDS	133	3111	.	+	0	ID=cds-WP_023254285.1;Parent=gene-CFSAN001082_RS34215;Dbxref=GenBank:WP_023254285.1;Name=WP_023254285.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459368.1;locus_tag=CFSAN001082_RS34215;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_023254285.1;transl_table=11
NZ_APAH01000203.1	RefSeq	gene	3196	3819	.	+	.	ID=gene-CFSAN001082_RS34220;Name=iprA;gbkey=Gene;gene=iprA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34220;old_locus_tag=CFSAN001082_10445
NZ_APAH01000203.1	Protein Homology	CDS	3196	3819	.	+	0	ID=cds-WP_000950242.1;Parent=gene-CFSAN001082_RS34220;Dbxref=GenBank:WP_000950242.1;Name=WP_000950242.1;gbkey=CDS;gene=iprA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459369.1;locus_tag=CFSAN001082_RS34220;product=hydrogen peroxide resistance inhibitor IprA;protein_id=WP_000950242.1;transl_table=11
NZ_APAH01000203.1	RefSeq	gene	3864	5021	.	-	.	ID=gene-CFSAN001082_RS34225;Name=ampH;gbkey=Gene;gene=ampH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34225;old_locus_tag=CFSAN001082_10450
NZ_APAH01000203.1	Protein Homology	CDS	3864	5021	.	-	0	ID=cds-WP_006501180.1;Parent=gene-CFSAN001082_RS34225;Dbxref=GenBank:WP_006501180.1;Name=WP_006501180.1;gbkey=CDS;gene=ampH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308453.1;locus_tag=CFSAN001082_RS34225;product=D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH;protein_id=WP_006501180.1;transl_table=11
NZ_APAH01000203.1	RefSeq	gene	5368	6588	.	+	.	ID=gene-CFSAN001082_RS34230;Name=sbmA;gbkey=Gene;gene=sbmA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34230;old_locus_tag=CFSAN001082_10455
NZ_APAH01000203.1	Protein Homology	CDS	5368	6588	.	+	0	ID=cds-WP_000477023.1;Parent=gene-CFSAN001082_RS34230;Dbxref=GenBank:WP_000477023.1;Name=WP_000477023.1;Ontology_term=GO:0015833,GO:1904680;gbkey=CDS;gene=sbmA;go_function=peptide transmembrane transporter activity|1904680||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459371.1;locus_tag=CFSAN001082_RS34230;product=peptide antibiotic transporter SbmA;protein_id=WP_000477023.1;transl_table=11
NZ_APAH01000203.1	RefSeq	gene	6603	7697	.	+	.	ID=gene-CFSAN001082_RS34235;Name=yaiW;gbkey=Gene;gene=yaiW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34235;old_locus_tag=CFSAN001082_10460
NZ_APAH01000203.1	Protein Homology	CDS	6603	7697	.	+	0	ID=cds-WP_023254286.1;Parent=gene-CFSAN001082_RS34235;Dbxref=GenBank:WP_023254286.1;Name=WP_023254286.1;gbkey=CDS;gene=yaiW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459372.1;locus_tag=CFSAN001082_RS34235;product=surface-exposed outer membrane lipoprotein YaiW;protein_id=WP_023254286.1;transl_table=11
NZ_APAH01000203.1	RefSeq	gene	7735	8043	.	-	.	ID=gene-CFSAN001082_RS34240;Name=CFSAN001082_RS34240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34240;old_locus_tag=CFSAN001082_10465
NZ_APAH01000203.1	Protein Homology	CDS	7735	8043	.	-	0	ID=cds-WP_000763139.1;Parent=gene-CFSAN001082_RS34240;Dbxref=GenBank:WP_000763139.1;Name=WP_000763139.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459373.1;locus_tag=CFSAN001082_RS34240;product=YaiY family protein;protein_id=WP_000763139.1;transl_table=11
NZ_APAH01000203.1	RefSeq	gene	8311	8526	.	+	.	ID=gene-CFSAN001082_RS34245;Name=CFSAN001082_RS34245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34245;old_locus_tag=CFSAN001082_10470
NZ_APAH01000203.1	Protein Homology	CDS	8311	8526	.	+	0	ID=cds-WP_001239243.1;Parent=gene-CFSAN001082_RS34245;Dbxref=GenBank:WP_001239243.1;Name=WP_001239243.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459374.1;locus_tag=CFSAN001082_RS34245;product=DUF2754 family protein;protein_id=WP_001239243.1;transl_table=11
NZ_APAH01000203.1	RefSeq	gene	8552	9646	.	-	.	ID=gene-CFSAN001082_RS34250;Name=ddlA;gbkey=Gene;gene=ddlA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34250;old_locus_tag=CFSAN001082_10475
NZ_APAH01000203.1	Protein Homology	CDS	8552	9646	.	-	0	ID=cds-WP_001096593.1;Parent=gene-CFSAN001082_RS34250;Dbxref=GenBank:WP_001096593.1;Name=WP_001096593.1;Ontology_term=GO:0008716;gbkey=CDS;gene=ddlA;go_function=D-alanine-D-alanine ligase activity|0008716||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459375.1;locus_tag=CFSAN001082_RS34250;product=D-alanine--D-alanine ligase;protein_id=WP_001096593.1;transl_table=11
NZ_APAH01000203.1	RefSeq	gene	9724	10437	.	+	.	ID=gene-CFSAN001082_RS34255;Name=CFSAN001082_RS34255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34255;old_locus_tag=CFSAN001082_10480
NZ_APAH01000203.1	Protein Homology	CDS	9724	10437	.	+	0	ID=cds-WP_000480794.1;Parent=gene-CFSAN001082_RS34255;Dbxref=GenBank:WP_000480794.1;Name=WP_000480794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459376.1;locus_tag=CFSAN001082_RS34255;product=extensin family protein;protein_id=WP_000480794.1;transl_table=11
NZ_APAH01000203.1	RefSeq	gene	10606	11817	.	+	.	ID=gene-CFSAN001082_RS34260;Name=CFSAN001082_RS34260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34260;old_locus_tag=CFSAN001082_10485
NZ_APAH01000203.1	Protein Homology	CDS	10606	11817	.	+	0	ID=cds-WP_000446768.1;Parent=gene-CFSAN001082_RS34260;Dbxref=GenBank:WP_000446768.1;Name=WP_000446768.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459377.1;locus_tag=CFSAN001082_RS34260;product=multidrug efflux MFS transporter;protein_id=WP_000446768.1;transl_table=11
##sequence-region NZ_APAH01000204.1 1 27848
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000204.1	RefSeq	region	1	27848	.	+	.	ID=NZ_APAH01000204.1:1..27848;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000204.1	RefSeq	pseudogene	1	378	.	-	.	ID=gene-CFSAN001082_RS34265;Name=CFSAN001082_RS34265;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS34265;old_locus_tag=CFSAN001082_10490;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000204.1	Protein Homology	CDS	1	378	.	-	0	ID=cds-CFSAN001082_RS34265;Parent=gene-CFSAN001082_RS34265;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460741.1;locus_tag=CFSAN001082_RS34265;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	873	1991	.	+	.	ID=gene-CFSAN001082_RS34270;Name=hyaA;gbkey=Gene;gene=hyaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34270;old_locus_tag=CFSAN001082_10495
NZ_APAH01000204.1	Protein Homology	CDS	873	1991	.	+	0	ID=cds-WP_023254288.1;Parent=gene-CFSAN001082_RS34270;Dbxref=GenBank:WP_023254288.1;Name=WP_023254288.1;gbkey=CDS;gene=hyaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460742.1;locus_tag=CFSAN001082_RS34270;product=hydrogenase 1 small subunit;protein_id=WP_023254288.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	1988	3781	.	+	.	ID=gene-CFSAN001082_RS34275;Name=hyaB;gbkey=Gene;gene=hyaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34275;old_locus_tag=CFSAN001082_10500
NZ_APAH01000204.1	Protein Homology	CDS	1988	3781	.	+	0	ID=cds-WP_000070982.1;Parent=gene-CFSAN001082_RS34275;Dbxref=GenBank:WP_000070982.1;Name=WP_000070982.1;gbkey=CDS;gene=hyaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460743.1;locus_tag=CFSAN001082_RS34275;product=Ni/Fe-hydrogenase large subunit;protein_id=WP_000070982.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	3800	4531	.	+	.	ID=gene-CFSAN001082_RS34280;Name=hyaC;gbkey=Gene;gene=hyaC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34280;old_locus_tag=CFSAN001082_10505
NZ_APAH01000204.1	Protein Homology	CDS	3800	4531	.	+	0	ID=cds-WP_000147036.1;Parent=gene-CFSAN001082_RS34280;Dbxref=GenBank:WP_000147036.1;Name=WP_000147036.1;gbkey=CDS;gene=hyaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460744.1;locus_tag=CFSAN001082_RS34280;product=Ni/Fe-hydrogenase b-type cytochrome subunit;protein_id=WP_000147036.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	4528	5124	.	+	.	ID=gene-CFSAN001082_RS34285;Name=hyaD;gbkey=Gene;gene=hyaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34285;old_locus_tag=CFSAN001082_10510
NZ_APAH01000204.1	Protein Homology	CDS	4528	5124	.	+	0	ID=cds-WP_023254289.1;Parent=gene-CFSAN001082_RS34285;Dbxref=GenBank:WP_023254289.1;Name=WP_023254289.1;gbkey=CDS;gene=hyaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460745.1;locus_tag=CFSAN001082_RS34285;product=hydrogenase 1 maturation protease;protein_id=WP_023254289.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	5114	5518	.	+	.	ID=gene-CFSAN001082_RS34290;Name=hyaE;gbkey=Gene;gene=hyaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34290;old_locus_tag=CFSAN001082_10515
NZ_APAH01000204.1	Protein Homology	CDS	5114	5518	.	+	0	ID=cds-WP_001262580.1;Parent=gene-CFSAN001082_RS34290;Dbxref=GenBank:WP_001262580.1;Name=WP_001262580.1;gbkey=CDS;gene=hyaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460746.1;locus_tag=CFSAN001082_RS34290;product=hydrogenase-1 operon protein HyaE;protein_id=WP_001262580.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	5515	6363	.	+	.	ID=gene-CFSAN001082_RS34295;Name=CFSAN001082_RS34295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34295;old_locus_tag=CFSAN001082_10520
NZ_APAH01000204.1	Protein Homology	CDS	5515	6363	.	+	0	ID=cds-WP_023254290.1;Parent=gene-CFSAN001082_RS34295;Dbxref=GenBank:WP_023254290.1;Name=WP_023254290.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460747.1;locus_tag=CFSAN001082_RS34295;product=hydrogenase expression/formation protein;protein_id=WP_023254290.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	6438	7982	.	+	.	ID=gene-CFSAN001082_RS34300;Name=appC;gbkey=Gene;gene=appC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34300;old_locus_tag=CFSAN001082_10525
NZ_APAH01000204.1	Protein Homology	CDS	6438	7982	.	+	0	ID=cds-WP_023254291.1;Parent=gene-CFSAN001082_RS34300;Dbxref=GenBank:WP_023254291.1;Name=WP_023254291.1;gbkey=CDS;gene=appC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460748.1;locus_tag=CFSAN001082_RS34300;product=cytochrome bd-II oxidase subunit 1;protein_id=WP_023254291.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	7994	9130	.	+	.	ID=gene-CFSAN001082_RS34305;Name=appB;gbkey=Gene;gene=appB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34305;old_locus_tag=CFSAN001082_10530
NZ_APAH01000204.1	Protein Homology	CDS	7994	9130	.	+	0	ID=cds-WP_000888110.1;Parent=gene-CFSAN001082_RS34305;Dbxref=GenBank:WP_000888110.1;Name=WP_000888110.1;gbkey=CDS;gene=appB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460749.1;locus_tag=CFSAN001082_RS34305;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_000888110.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	9143	9232	.	+	.	ID=gene-CFSAN001082_RS34310;Name=cbdX;gbkey=Gene;gene=cbdX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34310;old_locus_tag=CFSAN001082_10535
NZ_APAH01000204.1	Protein Homology	CDS	9143	9232	.	+	0	ID=cds-WP_000270301.1;Parent=gene-CFSAN001082_RS34310;Dbxref=GenBank:WP_000270301.1;Name=WP_000270301.1;gbkey=CDS;gene=cbdX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460750.1;locus_tag=CFSAN001082_RS34310;product=cytochrome bd-II oxidase subunit CbdX;protein_id=WP_000270301.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	9627	10901	.	+	.	ID=gene-CFSAN001082_RS34315;Name=CFSAN001082_RS34315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34315;old_locus_tag=CFSAN001082_10540
NZ_APAH01000204.1	Protein Homology	CDS	9627	10901	.	+	0	ID=cds-WP_001519734.1;Parent=gene-CFSAN001082_RS34315;Dbxref=GenBank:WP_001519734.1;Name=WP_001519734.1;Ontology_term=GO:0006520,GO:0000166,GO:0016639;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor|0016639||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122303.1;locus_tag=CFSAN001082_RS34315;product=Glu/Leu/Phe/Val family dehydrogenase;protein_id=WP_001519734.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	11115	12827	.	+	.	ID=gene-CFSAN001082_RS34320;Name=CFSAN001082_RS34320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34320;old_locus_tag=CFSAN001082_10545
NZ_APAH01000204.1	Protein Homology	CDS	11115	12827	.	+	0	ID=cds-WP_023206954.1;Parent=gene-CFSAN001082_RS34320;Dbxref=GenBank:WP_023206954.1;Name=WP_023206954.1;Ontology_term=GO:0005993,GO:0004555;gbkey=CDS;go_function=alpha%2Calpha-trehalase activity|0004555||IEA;go_process=trehalose catabolic process|0005993||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460752.1;locus_tag=CFSAN001082_RS34320;product=alpha%2Calpha-trehalase;protein_id=WP_023206954.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	12890	13144	.	-	.	ID=gene-CFSAN001082_RS34325;Name=CFSAN001082_RS34325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34325;old_locus_tag=CFSAN001082_10550
NZ_APAH01000204.1	Protein Homology	CDS	12890	13144	.	-	0	ID=cds-WP_000511320.1;Parent=gene-CFSAN001082_RS34325;Dbxref=GenBank:WP_000511320.1;Name=WP_000511320.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460753.1;locus_tag=CFSAN001082_RS34325;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_000511320.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	13313	14047	.	+	.	ID=gene-CFSAN001082_RS34330;Name=ycgR;gbkey=Gene;gene=ycgR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34330;old_locus_tag=CFSAN001082_10555
NZ_APAH01000204.1	Protein Homology	CDS	13313	14047	.	+	0	ID=cds-WP_023254292.1;Parent=gene-CFSAN001082_RS34330;Dbxref=GenBank:WP_023254292.1;Name=WP_023254292.1;Ontology_term=GO:0071945,GO:0035438;gbkey=CDS;gene=ycgR;go_function=cyclic-di-GMP binding|0035438||IEA;go_process=regulation of bacterial-type flagellum-dependent cell motility by regulation of motor speed|0071945||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460754.1;locus_tag=CFSAN001082_RS34330;product=flagellar brake protein YcgR;protein_id=WP_023254292.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	14061	14672	.	-	.	ID=gene-CFSAN001082_RS34335;Name=emtA;gbkey=Gene;gene=emtA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34335;old_locus_tag=CFSAN001082_10560
NZ_APAH01000204.1	Protein Homology	CDS	14061	14672	.	-	0	ID=cds-WP_000776974.1;Parent=gene-CFSAN001082_RS34335;Dbxref=GenBank:WP_000776974.1;Name=WP_000776974.1;gbkey=CDS;gene=emtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460755.1;locus_tag=CFSAN001082_RS34335;product=membrane-bound lytic murein transglycosylase EmtA;protein_id=WP_000776974.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	14844	15758	.	+	.	ID=gene-CFSAN001082_RS34340;Name=ldcA;gbkey=Gene;gene=ldcA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34340;old_locus_tag=CFSAN001082_10565
NZ_APAH01000204.1	Protein Homology	CDS	14844	15758	.	+	0	ID=cds-WP_000051613.1;Parent=gene-CFSAN001082_RS34340;Dbxref=GenBank:WP_000051613.1;Name=WP_000051613.1;gbkey=CDS;gene=ldcA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460756.1;locus_tag=CFSAN001082_RS34340;product=muramoyltetrapeptide carboxypeptidase;protein_id=WP_000051613.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	15855	17588	.	+	.	ID=gene-CFSAN001082_RS34345;Name=CFSAN001082_RS34345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34345;old_locus_tag=CFSAN001082_10570
NZ_APAH01000204.1	Protein Homology	CDS	15855	17588	.	+	0	ID=cds-WP_000338376.1;Parent=gene-CFSAN001082_RS34345;Dbxref=GenBank:WP_000338376.1;Name=WP_000338376.1;Ontology_term=GO:0006813,GO:0006884,GO:0055085,GO:0051139,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metal cation:proton antiporter activity|0051139||IEA;go_process=potassium ion transport|0006813||IEA,cell volume homeostasis|0006884||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460757.1;locus_tag=CFSAN001082_RS34345;product=potassium/proton antiporter;protein_id=WP_000338376.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	17650	18720	.	-	.	ID=gene-CFSAN001082_RS34350;Name=dadX;gbkey=Gene;gene=dadX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34350;old_locus_tag=CFSAN001082_10575
NZ_APAH01000204.1	Protein Homology	CDS	17650	18720	.	-	0	ID=cds-WP_023254293.1;Parent=gene-CFSAN001082_RS34350;Dbxref=GenBank:WP_023254293.1;Name=WP_023254293.1;Ontology_term=GO:0006522,GO:0008784;gbkey=CDS;gene=dadX;go_function=alanine racemase activity|0008784||IEA;go_process=alanine metabolic process|0006522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460758.1;locus_tag=CFSAN001082_RS34350;product=catabolic alanine racemase DadX;protein_id=WP_023254293.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	18734	20032	.	-	.	ID=gene-CFSAN001082_RS34355;Name=CFSAN001082_RS34355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34355;old_locus_tag=CFSAN001082_10580
NZ_APAH01000204.1	Protein Homology	CDS	18734	20032	.	-	0	ID=cds-WP_001266935.1;Parent=gene-CFSAN001082_RS34355;Dbxref=GenBank:WP_001266935.1;Name=WP_001266935.1;Ontology_term=GO:0055130,GO:0008718,GO:0016491,GO:0071949;gbkey=CDS;go_function=D-amino-acid dehydrogenase activity|0008718||IEA,oxidoreductase activity|0016491||IEA,FAD binding|0071949||IEA;go_process=D-alanine catabolic process|0055130||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460759.1;locus_tag=CFSAN001082_RS34355;product=D-amino acid dehydrogenase;protein_id=WP_001266935.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	20355	21887	.	+	.	ID=gene-CFSAN001082_RS34360;Name=CFSAN001082_RS34360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34360;old_locus_tag=CFSAN001082_10585
NZ_APAH01000204.1	Protein Homology	CDS	20355	21887	.	+	0	ID=cds-WP_000190832.1;Parent=gene-CFSAN001082_RS34360;Dbxref=GenBank:WP_000190832.1;Name=WP_000190832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460760.3;locus_tag=CFSAN001082_RS34360;product=SpoVR family protein;protein_id=WP_000190832.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	21934	22653	.	-	.	ID=gene-CFSAN001082_RS34365;Name=fadR;gbkey=Gene;gene=fadR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34365;old_locus_tag=CFSAN001082_10590
NZ_APAH01000204.1	Protein Homology	CDS	21934	22653	.	-	0	ID=cds-WP_000234826.1;Parent=gene-CFSAN001082_RS34365;Dbxref=GenBank:WP_000234826.1;Name=WP_000234826.1;Ontology_term=GO:0006355,GO:0019217,GO:0000062,GO:0003677,GO:0003700;gbkey=CDS;gene=fadR;go_function=fatty-acyl-CoA binding|0000062||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,regulation of fatty acid metabolic process|0019217||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460761.1;locus_tag=CFSAN001082_RS34365;product=fatty acid metabolism transcriptional regulator FadR;protein_id=WP_000234826.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	22873	24417	.	+	.	ID=gene-CFSAN001082_RS34370;Name=nhaB;gbkey=Gene;gene=nhaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34370;old_locus_tag=CFSAN001082_10595
NZ_APAH01000204.1	Protein Homology	CDS	22873	24417	.	+	0	ID=cds-WP_000406444.1;Parent=gene-CFSAN001082_RS34370;Dbxref=GenBank:WP_000406444.1;Name=WP_000406444.1;Ontology_term=GO:0006814,GO:0015385,GO:0016020;gbkey=CDS;gene=nhaB;go_component=membrane|0016020||IEA;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460762.1;locus_tag=CFSAN001082_RS34370;product=Na(+)/H(+) antiporter NhaB;protein_id=WP_000406444.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	24559	25089	.	+	.	ID=gene-CFSAN001082_RS34375;Name=dsbB;gbkey=Gene;gene=dsbB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34375;old_locus_tag=CFSAN001082_10600
NZ_APAH01000204.1	Protein Homology	CDS	24559	25089	.	+	0	ID=cds-WP_000943475.1;Parent=gene-CFSAN001082_RS34375;Dbxref=GenBank:WP_000943475.1;Name=WP_000943475.1;Ontology_term=GO:0006457,GO:0015035,GO:0016020;gbkey=CDS;gene=dsbB;go_component=membrane|0016020||IEA;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460763.1;locus_tag=CFSAN001082_RS34375;product=disulfide bond formation protein DsbB;protein_id=WP_000943475.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	25198	25539	.	+	.	ID=gene-CFSAN001082_RS34380;Name=CFSAN001082_RS34380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34380;old_locus_tag=CFSAN001082_10605
NZ_APAH01000204.1	Protein Homology	CDS	25198	25539	.	+	0	ID=cds-WP_023254294.1;Parent=gene-CFSAN001082_RS34380;Dbxref=GenBank:WP_023254294.1;Name=WP_023254294.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460764.1;locus_tag=CFSAN001082_RS34380;product=DUF1971 domain-containing protein;protein_id=WP_023254294.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	25610	25783	.	-	.	ID=gene-CFSAN001082_RS34385;Name=CFSAN001082_RS34385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34385;old_locus_tag=CFSAN001082_10610
NZ_APAH01000204.1	Protein Homology	CDS	25610	25783	.	-	0	ID=cds-WP_001083583.1;Parent=gene-CFSAN001082_RS34385;Dbxref=GenBank:WP_001083583.1;Name=WP_001083583.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460765.1;locus_tag=CFSAN001082_RS34385;product=GnsA/GnsB family addiction module toxin;protein_id=WP_001083583.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	25975	26112	.	-	.	ID=gene-CFSAN001082_RS0123440;Name=CFSAN001082_RS0123440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123440
NZ_APAH01000204.1	Protein Homology	CDS	25975	26112	.	-	0	ID=cds-WP_001519337.1;Parent=gene-CFSAN001082_RS0123440;Dbxref=GenBank:WP_001519337.1;Name=WP_001519337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460766.1;locus_tag=CFSAN001082_RS0123440;product=hypothetical protein;protein_id=WP_001519337.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	26464	26910	.	-	.	ID=gene-CFSAN001082_RS34390;Name=CFSAN001082_RS34390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34390;old_locus_tag=CFSAN001082_10620
NZ_APAH01000204.1	Protein Homology	CDS	26464	26910	.	-	0	ID=cds-WP_001285703.1;Parent=gene-CFSAN001082_RS34390;Dbxref=GenBank:WP_001285703.1;Name=WP_001285703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309703.5;locus_tag=CFSAN001082_RS34390;product=YcgN family cysteine cluster protein;protein_id=WP_001285703.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	27003	27662	.	-	.	ID=gene-CFSAN001082_RS34395;Name=CFSAN001082_RS34395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34395;old_locus_tag=CFSAN001082_10625
NZ_APAH01000204.1	Protein Homology	CDS	27003	27662	.	-	0	ID=cds-WP_023254295.1;Parent=gene-CFSAN001082_RS34395;Dbxref=GenBank:WP_023254295.1;Name=WP_023254295.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460768.1;locus_tag=CFSAN001082_RS34395;product=fumarylacetoacetate hydrolase family protein;protein_id=WP_023254295.1;transl_table=11
NZ_APAH01000204.1	RefSeq	gene	27712	27848	.	-	.	ID=gene-CFSAN001082_RS34400;Name=CFSAN001082_RS34400;end_range=27848,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34400;old_locus_tag=CFSAN001082_10630;partial=true
NZ_APAH01000204.1	Protein Homology	CDS	27712	27848	.	-	2	ID=cds-WP_023254296.1;Parent=gene-CFSAN001082_RS34400;Dbxref=GenBank:WP_023254296.1;Name=WP_023254296.1;end_range=27848,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309701.2;locus_tag=CFSAN001082_RS34400;partial=true;product=YcgL domain-containing protein;protein_id=WP_023254296.1;transl_table=11
##sequence-region NZ_APAH01000205.1 1 467
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000205.1	RefSeq	region	1	467	.	+	.	ID=NZ_APAH01000205.1:1..467;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000205.1	RefSeq	pseudogene	1	168	.	-	.	ID=gene-CFSAN001082_RS48880;Name=CFSAN001082_RS48880;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48880;old_locus_tag=CFSAN001082_10635;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000205.1	Protein Homology	CDS	1	168	.	-	0	ID=cds-CFSAN001082_RS48880;Parent=gene-CFSAN001082_RS48880;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463274.1;locus_tag=CFSAN001082_RS48880;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000206.1 1 12923
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000206.1	RefSeq	region	1	12923	.	+	.	ID=NZ_APAH01000206.1:1..12923;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000206.1	RefSeq	pseudogene	1	299	.	+	.	ID=gene-CFSAN001082_RS34410;Name=sifA;gbkey=Gene;gene=sifA;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS34410;old_locus_tag=CFSAN001082_10640;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000206.1	Protein Homology	CDS	1	299	.	+	2	ID=cds-CFSAN001082_RS34410;Parent=gene-CFSAN001082_RS34410;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;gene=sifA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460194.1;locus_tag=CFSAN001082_RS34410;partial=true;product=SPI-2 type III secretion system effector SifA;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000206.1	RefSeq	gene	615	1394	.	+	.	ID=gene-CFSAN001082_RS34415;Name=potC;gbkey=Gene;gene=potC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34415;old_locus_tag=CFSAN001082_10645
NZ_APAH01000206.1	Protein Homology	CDS	615	1394	.	+	0	ID=cds-WP_000580299.1;Parent=gene-CFSAN001082_RS34415;Dbxref=GenBank:WP_000580299.1;Name=WP_000580299.1;Ontology_term=GO:0055085;gbkey=CDS;gene=potC;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460193.1;locus_tag=CFSAN001082_RS34415;product=spermidine/putrescine ABC transporter permease PotC;protein_id=WP_000580299.1;transl_table=11
NZ_APAH01000206.1	RefSeq	gene	1419	2465	.	+	.	ID=gene-CFSAN001082_RS34420;Name=potD;gbkey=Gene;gene=potD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34420;old_locus_tag=CFSAN001082_10650
NZ_APAH01000206.1	Protein Homology	CDS	1419	2465	.	+	0	ID=cds-WP_000759329.1;Parent=gene-CFSAN001082_RS34420;Dbxref=GenBank:WP_000759329.1;Name=WP_000759329.1;Ontology_term=GO:0015846,GO:0019808,GO:0042597;gbkey=CDS;gene=potD;go_component=periplasmic space|0042597||IEA;go_function=polyamine binding|0019808||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121082.1;locus_tag=CFSAN001082_RS34420;product=spermidine/putrescine ABC transporter substrate-binding protein PotD;protein_id=WP_000759329.1;transl_table=11
NZ_APAH01000206.1	RefSeq	gene	2547	3368	.	-	.	ID=gene-CFSAN001082_RS34425;Name=cobB;gbkey=Gene;gene=cobB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34425;old_locus_tag=CFSAN001082_10655
NZ_APAH01000206.1	Protein Homology	CDS	2547	3368	.	-	0	ID=cds-WP_001191856.1;Parent=gene-CFSAN001082_RS34425;Dbxref=GenBank:WP_001191856.1;Name=WP_001191856.1;Ontology_term=GO:0070403;gbkey=CDS;gene=cobB;go_function=NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460191.1;locus_tag=CFSAN001082_RS34425;product=Sir2 family NAD+-dependent deacetylase;protein_id=WP_001191856.1;transl_table=11
NZ_APAH01000206.1	RefSeq	gene	3387	4298	.	-	.	ID=gene-CFSAN001082_RS34430;Name=nagK;gbkey=Gene;gene=nagK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34430;old_locus_tag=CFSAN001082_10660
NZ_APAH01000206.1	Protein Homology	CDS	3387	4298	.	-	0	ID=cds-WP_000291330.1;Parent=gene-CFSAN001082_RS34430;Dbxref=GenBank:WP_000291330.1;Name=WP_000291330.1;Ontology_term=GO:0045127;gbkey=CDS;gene=nagK;go_function=N-acetylglucosamine kinase activity|0045127||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460190.1;locus_tag=CFSAN001082_RS34430;product=N-acetylglucosamine kinase;protein_id=WP_000291330.1;transl_table=11
NZ_APAH01000206.1	RefSeq	gene	4327	5571	.	-	.	ID=gene-CFSAN001082_RS34435;Name=lolE;gbkey=Gene;gene=lolE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34435;old_locus_tag=CFSAN001082_10665
NZ_APAH01000206.1	Protein Homology	CDS	4327	5571	.	-	0	ID=cds-WP_000168091.1;Parent=gene-CFSAN001082_RS34435;Dbxref=GenBank:WP_000168091.1;Name=WP_000168091.1;Ontology_term=GO:0042953;gbkey=CDS;gene=lolE;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460189.1;locus_tag=CFSAN001082_RS34435;product=lipoprotein-releasing ABC transporter permease subunit LolE;protein_id=WP_000168091.1;transl_table=11
NZ_APAH01000206.1	RefSeq	gene	5571	6272	.	-	.	ID=gene-CFSAN001082_RS34440;Name=lolD;gbkey=Gene;gene=lolD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34440;old_locus_tag=CFSAN001082_10670
NZ_APAH01000206.1	Protein Homology	CDS	5571	6272	.	-	0	ID=cds-WP_001033714.1;Parent=gene-CFSAN001082_RS34440;Dbxref=GenBank:WP_001033714.1;Name=WP_001033714.1;Ontology_term=GO:0042953,GO:0005524,GO:0016020;gbkey=CDS;gene=lolD;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460188.1;locus_tag=CFSAN001082_RS34440;product=lipoprotein-releasing ABC transporter ATP-binding protein LolD;protein_id=WP_001033714.1;transl_table=11
NZ_APAH01000206.1	RefSeq	gene	6265	7464	.	-	.	ID=gene-CFSAN001082_RS34445;Name=lolC;gbkey=Gene;gene=lolC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34445;old_locus_tag=CFSAN001082_10675
NZ_APAH01000206.1	Protein Homology	CDS	6265	7464	.	-	0	ID=cds-WP_001518787.1;Parent=gene-CFSAN001082_RS34445;Dbxref=GenBank:WP_001518787.1;Name=WP_001518787.1;Ontology_term=GO:0042953,GO:0016020;gbkey=CDS;gene=lolC;go_component=membrane|0016020||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004976588.1;locus_tag=CFSAN001082_RS34445;product=lipoprotein-releasing ABC transporter permease subunit LolC;protein_id=WP_001518787.1;transl_table=11
NZ_APAH01000206.1	RefSeq	gene	7802	11248	.	+	.	ID=gene-CFSAN001082_RS34450;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34450;old_locus_tag=CFSAN001082_10680
NZ_APAH01000206.1	Protein Homology	CDS	7802	11248	.	+	0	ID=cds-WP_023254299.1;Parent=gene-CFSAN001082_RS34450;Dbxref=GenBank:WP_023254299.1;Name=WP_023254299.1;Ontology_term=GO:0006281,GO:0003676,GO:0003684,GO:0005524;gbkey=CDS;gene=mfd;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460186.1;locus_tag=CFSAN001082_RS34450;product=transcription-repair coupling factor;protein_id=WP_023254299.1;transl_table=11
NZ_APAH01000206.1	RefSeq	gene	11396	12361	.	+	.	ID=gene-CFSAN001082_RS34455;Name=ldtC;gbkey=Gene;gene=ldtC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34455;old_locus_tag=CFSAN001082_10685
NZ_APAH01000206.1	Protein Homology	CDS	11396	12361	.	+	0	ID=cds-WP_023254300.1;Parent=gene-CFSAN001082_RS34455;Dbxref=GenBank:WP_023254300.1;Name=WP_023254300.1;gbkey=CDS;gene=ldtC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460185.1;locus_tag=CFSAN001082_RS34455;product=L%2CD-transpeptidase LdtC;protein_id=WP_023254300.1;transl_table=11
NZ_APAH01000206.1	RefSeq	gene	12458	12715	.	-	.	ID=gene-CFSAN001082_RS34460;Name=bhsA;gbkey=Gene;gene=bhsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34460;old_locus_tag=CFSAN001082_10690
NZ_APAH01000206.1	Protein Homology	CDS	12458	12715	.	-	0	ID=cds-WP_000800133.1;Parent=gene-CFSAN001082_RS34460;Dbxref=GenBank:WP_000800133.1;Name=WP_000800133.1;Ontology_term=GO:0006950,GO:0046688;gbkey=CDS;gene=bhsA;go_process=response to stress|0006950||IEA,response to copper ion|0046688||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460184.1;locus_tag=CFSAN001082_RS34460;product=multiple stress resistance protein BhsA;protein_id=WP_000800133.1;transl_table=11
##sequence-region NZ_APAH01000207.1 1 15533
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000207.1	RefSeq	region	1	15533	.	+	.	ID=NZ_APAH01000207.1:1..15533;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000207.1	RefSeq	gene	139	303	.	+	.	ID=gene-CFSAN001082_RS34465;Name=CFSAN001082_RS34465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34465;old_locus_tag=CFSAN001082_10695
NZ_APAH01000207.1	Protein Homology	CDS	139	303	.	+	0	ID=cds-WP_023254301.1;Parent=gene-CFSAN001082_RS34465;Dbxref=GenBank:WP_023254301.1;Name=WP_023254301.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460810.1;locus_tag=CFSAN001082_RS34465;product=hypothetical protein;protein_id=WP_023254301.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	294	509	.	+	.	ID=gene-CFSAN001082_RS49120;Name=CFSAN001082_RS49120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49120
NZ_APAH01000207.1	Protein Homology	CDS	294	509	.	+	0	ID=cds-WP_024150284.1;Parent=gene-CFSAN001082_RS49120;Dbxref=GenBank:WP_024150284.1;Name=WP_024150284.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001529227.1;locus_tag=CFSAN001082_RS49120;product=hypothetical protein;protein_id=WP_024150284.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	527	1177	.	+	.	ID=gene-CFSAN001082_RS34470;Name=pphA;gbkey=Gene;gene=pphA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34470;old_locus_tag=CFSAN001082_10700
NZ_APAH01000207.1	Protein Homology	CDS	527	1177	.	+	0	ID=cds-WP_023254302.1;Parent=gene-CFSAN001082_RS34470;Dbxref=GenBank:WP_023254302.1;Name=WP_023254302.1;Ontology_term=GO:0016787;gbkey=CDS;gene=pphA;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460809.1;locus_tag=CFSAN001082_RS34470;product=protein-serine/threonine phosphatase;protein_id=WP_023254302.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	1196	1387	.	-	.	ID=gene-CFSAN001082_RS34475;Name=CFSAN001082_RS34475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34475;old_locus_tag=CFSAN001082_10705
NZ_APAH01000207.1	Protein Homology	CDS	1196	1387	.	-	0	ID=cds-WP_000457838.1;Parent=gene-CFSAN001082_RS34475;Dbxref=GenBank:WP_000457838.1;Name=WP_000457838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460808.1;locus_tag=CFSAN001082_RS34475;product=YebW family protein;protein_id=WP_000457838.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	1498	1734	.	-	.	ID=gene-CFSAN001082_RS34480;Name=CFSAN001082_RS34480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34480;old_locus_tag=CFSAN001082_10710
NZ_APAH01000207.1	Protein Homology	CDS	1498	1734	.	-	0	ID=cds-WP_024131167.1;Parent=gene-CFSAN001082_RS34480;Dbxref=GenBank:WP_024131167.1;Name=WP_024131167.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707284.2;locus_tag=CFSAN001082_RS34480;product=YebV family protein;protein_id=WP_024131167.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	1851	3290	.	-	.	ID=gene-CFSAN001082_RS34485;Name=rsmF;gbkey=Gene;gene=rsmF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34485;old_locus_tag=CFSAN001082_10715
NZ_APAH01000207.1	Protein Homology	CDS	1851	3290	.	-	0	ID=cds-WP_023254303.1;Parent=gene-CFSAN001082_RS34485;Dbxref=GenBank:WP_023254303.1;Name=WP_023254303.1;Ontology_term=GO:0001510,GO:0003723,GO:0008649;gbkey=CDS;gene=rsmF;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;go_process=RNA methylation|0001510||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460806.1;locus_tag=CFSAN001082_RS34485;product=16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF;protein_id=WP_023254303.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	3368	6001	.	-	.	ID=gene-CFSAN001082_RS34490;Name=CFSAN001082_RS34490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34490;old_locus_tag=CFSAN001082_10720
NZ_APAH01000207.1	Protein Homology	CDS	3368	6001	.	-	0	ID=cds-WP_001521100.1;Parent=gene-CFSAN001082_RS34490;Dbxref=GenBank:WP_001521100.1;Name=WP_001521100.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416348.2;locus_tag=CFSAN001082_RS34490;product=PqiB family protein;protein_id=WP_001521100.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	5970	7253	.	-	.	ID=gene-CFSAN001082_RS34495;Name=yebS;gbkey=Gene;gene=yebS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34495;old_locus_tag=CFSAN001082_10725
NZ_APAH01000207.1	Protein Homology	CDS	5970	7253	.	-	0	ID=cds-WP_001207293.1;Parent=gene-CFSAN001082_RS34495;Dbxref=GenBank:WP_001207293.1;Name=WP_001207293.1;gbkey=CDS;gene=yebS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460804.1;locus_tag=CFSAN001082_RS34495;product=membrane integrity lipid transport subunit YebS;protein_id=WP_001207293.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	7382	7879	.	+	.	ID=gene-CFSAN001082_RS34500;Name=CFSAN001082_RS34500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34500;old_locus_tag=CFSAN001082_10730
NZ_APAH01000207.1	Protein Homology	CDS	7382	7879	.	+	0	ID=cds-WP_001518229.1;Parent=gene-CFSAN001082_RS34500;Dbxref=GenBank:WP_001518229.1;Name=WP_001518229.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707287.1;locus_tag=CFSAN001082_RS34500;product=GAF domain-containing protein;protein_id=WP_001518229.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	7977	8663	.	+	.	ID=gene-CFSAN001082_RS34505;Name=proQ;gbkey=Gene;gene=proQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34505;old_locus_tag=CFSAN001082_10735
NZ_APAH01000207.1	Protein Homology	CDS	7977	8663	.	+	0	ID=cds-WP_000431401.1;Parent=gene-CFSAN001082_RS34505;Dbxref=GenBank:WP_000431401.1;Name=WP_000431401.1;Ontology_term=GO:0010608,GO:0003723,GO:0033592,GO:0034057;gbkey=CDS;gene=proQ;go_function=RNA binding|0003723||IEA,RNA strand annealing activity|0033592||IEA,RNA strand-exchange activity|0034057||IEA;go_process=post-transcriptional regulation of gene expression|0010608||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460802.1;locus_tag=CFSAN001082_RS34505;product=RNA chaperone ProQ;protein_id=WP_000431401.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	8683	10731	.	+	.	ID=gene-CFSAN001082_RS34510;Name=prc;gbkey=Gene;gene=prc;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34510;old_locus_tag=CFSAN001082_10740
NZ_APAH01000207.1	Protein Homology	CDS	8683	10731	.	+	0	ID=cds-WP_001091237.1;Parent=gene-CFSAN001082_RS34510;Dbxref=GenBank:WP_001091237.1;Name=WP_001091237.1;Ontology_term=GO:0006508,GO:0005515,GO:0008236;gbkey=CDS;gene=prc;go_function=protein binding|0005515||IEA,serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460801.1;locus_tag=CFSAN001082_RS34510;product=carboxy terminal-processing peptidase;protein_id=WP_001091237.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	10925	11806	.	+	.	ID=gene-CFSAN001082_RS34515;Name=htpX;gbkey=Gene;gene=htpX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34515;old_locus_tag=CFSAN001082_10745
NZ_APAH01000207.1	Protein Homology	CDS	10925	11806	.	+	0	ID=cds-WP_000984498.1;Parent=gene-CFSAN001082_RS34515;Dbxref=GenBank:WP_000984498.1;Name=WP_000984498.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=htpX;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014229823.1;locus_tag=CFSAN001082_RS34515;product=protease HtpX;protein_id=WP_000984498.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	11854	13227	.	-	.	ID=gene-CFSAN001082_RS34520;Name=CFSAN001082_RS34520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34520;old_locus_tag=CFSAN001082_10750
NZ_APAH01000207.1	Protein Homology	CDS	11854	13227	.	-	0	ID=cds-WP_000416142.1;Parent=gene-CFSAN001082_RS34520;Dbxref=GenBank:WP_000416142.1;Name=WP_000416142.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460799.1;locus_tag=CFSAN001082_RS34520;product=MFS transporter;protein_id=WP_000416142.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	13403	14194	.	+	.	ID=gene-CFSAN001082_RS34525;Name=kdgR;gbkey=Gene;gene=kdgR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34525;old_locus_tag=CFSAN001082_10755
NZ_APAH01000207.1	Protein Homology	CDS	13403	14194	.	+	0	ID=cds-WP_001262195.1;Parent=gene-CFSAN001082_RS34525;Dbxref=GenBank:WP_001262195.1;Name=WP_001262195.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=kdgR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460798.1;locus_tag=CFSAN001082_RS34525;product=DNA-binding transcriptional regulator KdgR;protein_id=WP_001262195.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	14406	14645	.	-	.	ID=gene-CFSAN001082_RS34530;Name=yobH;gbkey=Gene;gene=yobH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34530;old_locus_tag=CFSAN001082_10765
NZ_APAH01000207.1	Protein Homology	CDS	14406	14645	.	-	0	ID=cds-WP_023254304.1;Parent=gene-CFSAN001082_RS34530;Dbxref=GenBank:WP_023254304.1;Name=WP_023254304.1;gbkey=CDS;gene=yobH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460797.1;locus_tag=CFSAN001082_RS34530;product=invasion protein YobH;protein_id=WP_023254304.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	14803	14946	.	+	.	ID=gene-CFSAN001082_RS34535;Name=mgrB;gbkey=Gene;gene=mgrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34535;old_locus_tag=CFSAN001082_10770
NZ_APAH01000207.1	Protein Homology	CDS	14803	14946	.	+	0	ID=cds-WP_000714547.1;Parent=gene-CFSAN001082_RS34535;Dbxref=GenBank:WP_000714547.1;Name=WP_000714547.1;gbkey=CDS;gene=mgrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460796.1;locus_tag=CFSAN001082_RS34535;product=PhoP/PhoQ regulator MgrB;protein_id=WP_000714547.1;transl_table=11
NZ_APAH01000207.1	RefSeq	gene	15017	15304	.	+	.	ID=gene-CFSAN001082_RS34540;Name=CFSAN001082_RS34540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34540;old_locus_tag=CFSAN001082_10775
NZ_APAH01000207.1	Protein Homology	CDS	15017	15304	.	+	0	ID=cds-WP_001000660.1;Parent=gene-CFSAN001082_RS34540;Dbxref=GenBank:WP_001000660.1;Name=WP_001000660.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460795.1;locus_tag=CFSAN001082_RS34540;product=YebO family protein;protein_id=WP_001000660.1;transl_table=11
##sequence-region NZ_APAH01000208.1 1 20466
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000208.1	RefSeq	region	1	20466	.	+	.	ID=NZ_APAH01000208.1:1..20466;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000208.1	RefSeq	gene	1	696	.	-	.	ID=gene-CFSAN001082_RS34545;Name=CFSAN001082_RS34545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34545;old_locus_tag=CFSAN001082_10780;partial=true;start_range=.,1
NZ_APAH01000208.1	Protein Homology	CDS	1	696	.	-	0	ID=cds-WP_023254305.1;Parent=gene-CFSAN001082_RS34545;Dbxref=GenBank:WP_023254305.1;Name=WP_023254305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001159683.1;locus_tag=CFSAN001082_RS34545;partial=true;product=SIR2 family protein;protein_id=WP_023254305.1;start_range=.,1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	846	1811	.	+	.	ID=gene-CFSAN001082_RS34550;Name=CFSAN001082_RS34550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34550;old_locus_tag=CFSAN001082_10785
NZ_APAH01000208.1	Protein Homology	CDS	846	1811	.	+	0	ID=cds-WP_023254306.1;Parent=gene-CFSAN001082_RS34550;Dbxref=GenBank:WP_023254306.1;Name=WP_023254306.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014227705.1;locus_tag=CFSAN001082_RS34550;product=5'-nucleotidase;protein_id=WP_023254306.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	1889	2764	.	-	.	ID=gene-CFSAN001082_RS34555;Name=CFSAN001082_RS34555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34555;old_locus_tag=CFSAN001082_10790
NZ_APAH01000208.1	Protein Homology	CDS	1889	2764	.	-	0	ID=cds-WP_023194716.1;Parent=gene-CFSAN001082_RS34555;Dbxref=GenBank:WP_023194716.1;Name=WP_023194716.1;Ontology_term=GO:0009307,GO:0015666;gbkey=CDS;go_function=restriction endodeoxyribonuclease activity|0015666||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465694.1;locus_tag=CFSAN001082_RS34555;product=phosphorothioated DNA-binding restriction endonuclease;protein_id=WP_023194716.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	2830	3057	.	-	.	ID=gene-CFSAN001082_RS0123445;Name=CFSAN001082_RS0123445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123445;old_locus_tag=CFSAN001082_10795
NZ_APAH01000208.1	Protein Homology	CDS	2830	3057	.	-	0	ID=cds-WP_024145427.1;Parent=gene-CFSAN001082_RS0123445;Dbxref=GenBank:WP_024145427.1;Name=WP_024145427.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012737278.1;locus_tag=CFSAN001082_RS0123445;product=helix-turn-helix domain-containing protein;protein_id=WP_024145427.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	3160	3438	.	+	.	ID=gene-CFSAN001082_RS34560;Name=CFSAN001082_RS34560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34560;old_locus_tag=CFSAN001082_10800
NZ_APAH01000208.1	Protein Homology	CDS	3160	3438	.	+	0	ID=cds-WP_023194714.1;Parent=gene-CFSAN001082_RS34560;Dbxref=GenBank:WP_023194714.1;Name=WP_023194714.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001577780.1;locus_tag=CFSAN001082_RS34560;product=helix-turn-helix domain-containing protein;protein_id=WP_023194714.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	3645	4913	.	-	.	ID=gene-CFSAN001082_RS34565;Name=CFSAN001082_RS34565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34565;old_locus_tag=CFSAN001082_10805
NZ_APAH01000208.1	Protein Homology	CDS	3645	4913	.	-	0	ID=cds-WP_023194713.1;Parent=gene-CFSAN001082_RS34565;Dbxref=GenBank:WP_023194713.1;Name=WP_023194713.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012421665.1;locus_tag=CFSAN001082_RS34565;product=tyrosine-type recombinase/integrase;protein_id=WP_023194713.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	5113	5197	.	-	.	ID=gene-CFSAN001082_RS34570;Name=CFSAN001082_RS34570;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS34570;old_locus_tag=CFSAN001082_t10872
NZ_APAH01000208.1	tRNAscan-SE	tRNA	5113	5197	.	-	.	ID=rna-CFSAN001082_RS34570;Parent=gene-CFSAN001082_RS34570;anticodon=(pos:complement(5161..5163));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS34570;product=tRNA-Leu
NZ_APAH01000208.1	tRNAscan-SE	exon	5113	5197	.	-	.	ID=exon-CFSAN001082_RS34570-1;Parent=rna-CFSAN001082_RS34570;anticodon=(pos:complement(5161..5163));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS34570;product=tRNA-Leu
NZ_APAH01000208.1	RefSeq	gene	5420	6439	.	+	.	ID=gene-CFSAN001082_RS34575;Name=ahr;gbkey=Gene;gene=ahr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34575;old_locus_tag=CFSAN001082_10810
NZ_APAH01000208.1	Protein Homology	CDS	5420	6439	.	+	0	ID=cds-WP_000152563.1;Parent=gene-CFSAN001082_RS34575;Dbxref=GenBank:WP_000152563.1;Name=WP_000152563.1;Ontology_term=GO:0006631,GO:0008106,GO:0016616;gbkey=CDS;gene=ahr;go_function=alcohol dehydrogenase (NADP+) activity|0008106||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463346.1;locus_tag=CFSAN001082_RS34575;product=NADPH-dependent aldehyde reductase Ahr;protein_id=WP_000152563.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	6467	6997	.	-	.	ID=gene-CFSAN001082_RS34580;Name=idnK;gbkey=Gene;gene=idnK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34580;old_locus_tag=CFSAN001082_10815
NZ_APAH01000208.1	Protein Homology	CDS	6467	6997	.	-	0	ID=cds-WP_023254307.1;Parent=gene-CFSAN001082_RS34580;Dbxref=GenBank:WP_023254307.1;Name=WP_023254307.1;gbkey=CDS;gene=idnK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463345.1;locus_tag=CFSAN001082_RS34580;product=gluconokinase;protein_id=WP_023254307.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	7214	8245	.	+	.	ID=gene-CFSAN001082_RS34585;Name=idnD;gbkey=Gene;gene=idnD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34585;old_locus_tag=CFSAN001082_10820
NZ_APAH01000208.1	Protein Homology	CDS	7214	8245	.	+	0	ID=cds-WP_023254308.1;Parent=gene-CFSAN001082_RS34585;Dbxref=GenBank:WP_023254308.1;Name=WP_023254308.1;gbkey=CDS;gene=idnD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463344.1;locus_tag=CFSAN001082_RS34585;product=L-idonate 5-dehydrogenase;protein_id=WP_023254308.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	8270	9034	.	+	.	ID=gene-CFSAN001082_RS34590;Name=idnO;gbkey=Gene;gene=idnO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34590;old_locus_tag=CFSAN001082_10825
NZ_APAH01000208.1	Protein Homology	CDS	8270	9034	.	+	0	ID=cds-WP_000998688.1;Parent=gene-CFSAN001082_RS34590;Dbxref=GenBank:WP_000998688.1;Name=WP_000998688.1;gbkey=CDS;gene=idnO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463343.1;locus_tag=CFSAN001082_RS34590;product=gluconate 5-dehydrogenase;protein_id=WP_000998688.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	9096	10415	.	+	.	ID=gene-CFSAN001082_RS34595;Name=idnT;gbkey=Gene;gene=idnT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34595;old_locus_tag=CFSAN001082_10830
NZ_APAH01000208.1	Protein Homology	CDS	9096	10415	.	+	0	ID=cds-WP_001128356.1;Parent=gene-CFSAN001082_RS34595;Dbxref=GenBank:WP_001128356.1;Name=WP_001128356.1;gbkey=CDS;gene=idnT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463342.1;locus_tag=CFSAN001082_RS34595;product=gnt-II system L-idonate transporter;protein_id=WP_001128356.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	10479	11477	.	+	.	ID=gene-CFSAN001082_RS34600;Name=idnR;gbkey=Gene;gene=idnR;gene_biotype=protein_coding;gene_synonym=gntH,yjgS;locus_tag=CFSAN001082_RS34600;old_locus_tag=CFSAN001082_10835
NZ_APAH01000208.1	Protein Homology	CDS	10479	11477	.	+	0	ID=cds-WP_001244064.1;Parent=gene-CFSAN001082_RS34600;Dbxref=GenBank:WP_001244064.1;Name=WP_001244064.1;Ontology_term=GO:0006355,GO:0019521,GO:0003700;gbkey=CDS;gene=idnR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,D-gluconate metabolic process|0019521||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463341.1;locus_tag=CFSAN001082_RS34600;product=DNA-binding transcriptional regulator IdnR;protein_id=WP_001244064.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	11693	12775	.	-	.	ID=gene-CFSAN001082_RS34605;Name=lptG;gbkey=Gene;gene=lptG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34605;old_locus_tag=CFSAN001082_10840
NZ_APAH01000208.1	Protein Homology	CDS	11693	12775	.	-	0	ID=cds-WP_023254309.1;Parent=gene-CFSAN001082_RS34605;Dbxref=GenBank:WP_023254309.1;Name=WP_023254309.1;Ontology_term=GO:0055085,GO:0015221,GO:0043190;gbkey=CDS;gene=lptG;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463340.1;locus_tag=CFSAN001082_RS34605;product=LPS export ABC transporter permease LptG;protein_id=WP_023254309.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	12775	13875	.	-	.	ID=gene-CFSAN001082_RS34610;Name=lptF;gbkey=Gene;gene=lptF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34610;old_locus_tag=CFSAN001082_10845
NZ_APAH01000208.1	Protein Homology	CDS	12775	13875	.	-	0	ID=cds-WP_000584132.1;Parent=gene-CFSAN001082_RS34610;Dbxref=GenBank:WP_000584132.1;Name=WP_000584132.1;Ontology_term=GO:0055085,GO:0015221,GO:0043190;gbkey=CDS;gene=lptF;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463339.1;locus_tag=CFSAN001082_RS34610;product=LPS export ABC transporter permease LptF;protein_id=WP_000584132.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	13939	13989	.	-	.	ID=gene-CFSAN001082_RS48885;Name=CFSAN001082_RS48885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48885
NZ_APAH01000208.1	Protein Homology	CDS	13939	13989	.	-	0	ID=cds-WP_212724070.1;Parent=gene-CFSAN001082_RS48885;Dbxref=GenBank:WP_212724070.1;Name=WP_212724070.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051214.1;locus_tag=CFSAN001082_RS48885;product=hypothetical protein;protein_id=WP_212724070.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	14270	15781	.	+	.	ID=gene-CFSAN001082_RS34615;Name=pepA;gbkey=Gene;gene=pepA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34615;old_locus_tag=CFSAN001082_10850
NZ_APAH01000208.1	Protein Homology	CDS	14270	15781	.	+	0	ID=cds-WP_000397158.1;Parent=gene-CFSAN001082_RS34615;Dbxref=GenBank:WP_000397158.1;Name=WP_000397158.1;Ontology_term=GO:0006508,GO:0019538,GO:0030145,GO:0070006;gbkey=CDS;gene=pepA;go_function=manganese ion binding|0030145||IEA,metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA,protein metabolic process|0019538||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463337.1;locus_tag=CFSAN001082_RS34615;product=leucyl aminopeptidase;protein_id=WP_000397158.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	15918	16361	.	+	.	ID=gene-CFSAN001082_RS34620;Name=holC;gbkey=Gene;gene=holC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34620;old_locus_tag=CFSAN001082_10855
NZ_APAH01000208.1	Protein Homology	CDS	15918	16361	.	+	0	ID=cds-WP_001523689.1;Parent=gene-CFSAN001082_RS34620;Dbxref=GenBank:WP_001523689.1;Name=WP_001523689.1;gbkey=CDS;gene=holC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004098129.1;locus_tag=CFSAN001082_RS34620;product=DNA polymerase III subunit chi;protein_id=WP_001523689.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	16361	19216	.	+	.	ID=gene-CFSAN001082_RS34625;Name=CFSAN001082_RS34625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34625;old_locus_tag=CFSAN001082_10860
NZ_APAH01000208.1	Protein Homology	CDS	16361	19216	.	+	0	ID=cds-WP_023254310.1;Parent=gene-CFSAN001082_RS34625;Dbxref=GenBank:WP_023254310.1;Name=WP_023254310.1;Ontology_term=GO:0006438,GO:0000166,GO:0004812,GO:0004832,GO:0005524;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,valine-tRNA ligase activity|0004832||IEA,ATP binding|0005524||IEA;go_process=valyl-tRNA aminoacylation|0006438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000416368.1;locus_tag=CFSAN001082_RS34625;product=valine--tRNA ligase;protein_id=WP_023254310.1;transl_table=11
NZ_APAH01000208.1	RefSeq	gene	19358	20466	.	-	.	ID=gene-CFSAN001082_RS34630;Name=CFSAN001082_RS34630;end_range=20466,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34630;old_locus_tag=CFSAN001082_10865;partial=true
NZ_APAH01000208.1	Protein Homology	CDS	19358	20466	.	-	2	ID=cds-WP_023254311.1;Parent=gene-CFSAN001082_RS34630;Dbxref=GenBank:WP_023254311.1;Name=WP_023254311.1;end_range=20466,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463334.1;locus_tag=CFSAN001082_RS34630;partial=true;product=YjgN family protein;protein_id=WP_023254311.1;transl_table=11
##sequence-region NZ_APAH01000209.1 1 16849
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000209.1	RefSeq	region	1	16849	.	+	.	ID=NZ_APAH01000209.1:1..16849;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000209.1	RefSeq	gene	123	1334	.	-	.	ID=gene-CFSAN001082_RS34635;Name=CFSAN001082_RS34635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34635;old_locus_tag=CFSAN001082_10872
NZ_APAH01000209.1	Protein Homology	CDS	123	1334	.	-	0	ID=cds-WP_000797666.1;Parent=gene-CFSAN001082_RS34635;Dbxref=GenBank:WP_000797666.1;Name=WP_000797666.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460327.1;locus_tag=CFSAN001082_RS34635;product=MFS transporter;protein_id=WP_000797666.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	1475	1834	.	-	.	ID=gene-CFSAN001082_RS34640;Name=CFSAN001082_RS34640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34640;old_locus_tag=CFSAN001082_10877
NZ_APAH01000209.1	Protein Homology	CDS	1475	1834	.	-	0	ID=cds-WP_000980454.1;Parent=gene-CFSAN001082_RS34640;Dbxref=GenBank:WP_000980454.1;Name=WP_000980454.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460328.1;locus_tag=CFSAN001082_RS34640;product=YdiL family protein;protein_id=WP_000980454.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	2002	2109	.	-	.	ID=gene-CFSAN001082_RS46295;Name=rprA;gbkey=Gene;gene=rprA;gene_biotype=antisense_RNA;locus_tag=CFSAN001082_RS46295
NZ_APAH01000209.1	cmsearch	antisense_RNA	2002	2109	.	-	.	ID=rna-CFSAN001082_RS46295;Parent=gene-CFSAN001082_RS46295;Dbxref=RFAM:RF00034;gbkey=ncRNA;gene=rprA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46295;product=antisense sRNA RprA
NZ_APAH01000209.1	cmsearch	exon	2002	2109	.	-	.	ID=exon-CFSAN001082_RS46295-1;Parent=rna-CFSAN001082_RS46295;Dbxref=RFAM:RF00034;gbkey=ncRNA;gene=rprA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46295;product=antisense sRNA RprA
NZ_APAH01000209.1	RefSeq	gene	2292	3410	.	-	.	ID=gene-CFSAN001082_RS34645;Name=ydiK;gbkey=Gene;gene=ydiK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34645;old_locus_tag=CFSAN001082_10882
NZ_APAH01000209.1	Protein Homology	CDS	2292	3410	.	-	0	ID=cds-WP_000248615.1;Parent=gene-CFSAN001082_RS34645;Dbxref=GenBank:WP_000248615.1;Name=WP_000248615.1;gbkey=CDS;gene=ydiK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460329.1;locus_tag=CFSAN001082_RS34645;product=AI-2E family transporter YdiK;protein_id=WP_000248615.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	3675	6731	.	+	.	ID=gene-CFSAN001082_RS34650;Name=ydiJ;gbkey=Gene;gene=ydiJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34650;old_locus_tag=CFSAN001082_10887
NZ_APAH01000209.1	Protein Homology	CDS	3675	6731	.	+	0	ID=cds-WP_023254312.1;Parent=gene-CFSAN001082_RS34650;Dbxref=GenBank:WP_023254312.1;Name=WP_023254312.1;Ontology_term=GO:1903457,GO:0008720,GO:0046872;gbkey=CDS;gene=ydiJ;go_function=D-lactate dehydrogenase activity|0008720||IEA,metal ion binding|0046872||IEA;go_process=lactate catabolic process|1903457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460330.1;locus_tag=CFSAN001082_RS34650;product=D-2-hydroxyglutarate dehydrogenase YdiJ;protein_id=WP_023254312.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	6728	7138	.	+	.	ID=gene-CFSAN001082_RS34655;Name=menI;gbkey=Gene;gene=menI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34655;old_locus_tag=CFSAN001082_10892
NZ_APAH01000209.1	Protein Homology	CDS	6728	7138	.	+	0	ID=cds-WP_000637930.1;Parent=gene-CFSAN001082_RS34655;Dbxref=GenBank:WP_000637930.1;Name=WP_000637930.1;gbkey=CDS;gene=menI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460331.1;locus_tag=CFSAN001082_RS34655;product=1%2C4-dihydroxy-2-naphthoyl-CoA hydrolase;protein_id=WP_000637930.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	7237	7425	.	+	.	ID=gene-CFSAN001082_RS34660;Name=CFSAN001082_RS34660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34660;old_locus_tag=CFSAN001082_10897
NZ_APAH01000209.1	Protein Homology	CDS	7237	7425	.	+	0	ID=cds-WP_001537749.1;Parent=gene-CFSAN001082_RS34660;Dbxref=GenBank:WP_001537749.1;Name=WP_001537749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416200.2;locus_tag=CFSAN001082_RS34660;product=YdiH family protein;protein_id=WP_001537749.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	7713	9059	.	-	.	ID=gene-CFSAN001082_RS34665;Name=CFSAN001082_RS34665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34665;old_locus_tag=CFSAN001082_10902
NZ_APAH01000209.1	Protein Homology	CDS	7713	9059	.	-	0	ID=cds-WP_023254313.1;Parent=gene-CFSAN001082_RS34665;Dbxref=GenBank:WP_023254313.1;Name=WP_023254313.1;Ontology_term=GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460333.1;locus_tag=CFSAN001082_RS34665;product=L-cystine transporter;protein_id=WP_023254313.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	9486	9854	.	+	.	ID=gene-CFSAN001082_RS34670;Name=sufA;gbkey=Gene;gene=sufA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34670;old_locus_tag=CFSAN001082_10907
NZ_APAH01000209.1	Protein Homology	CDS	9486	9854	.	+	0	ID=cds-WP_000418968.1;Parent=gene-CFSAN001082_RS34670;Dbxref=GenBank:WP_000418968.1;Name=WP_000418968.1;gbkey=CDS;gene=sufA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460334.1;locus_tag=CFSAN001082_RS34670;product=Fe-S cluster assembly scaffold SufA;protein_id=WP_000418968.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	9863	11350	.	+	.	ID=gene-CFSAN001082_RS34675;Name=sufB;gbkey=Gene;gene=sufB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34675;old_locus_tag=CFSAN001082_10912
NZ_APAH01000209.1	Protein Homology	CDS	9863	11350	.	+	0	ID=cds-WP_023254314.1;Parent=gene-CFSAN001082_RS34675;Dbxref=GenBank:WP_023254314.1;Name=WP_023254314.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufB;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460335.1;locus_tag=CFSAN001082_RS34675;product=Fe-S cluster assembly protein SufB;protein_id=WP_023254314.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	11367	12113	.	+	.	ID=gene-CFSAN001082_RS34680;Name=sufC;gbkey=Gene;gene=sufC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34680;old_locus_tag=CFSAN001082_10917
NZ_APAH01000209.1	Protein Homology	CDS	11367	12113	.	+	0	ID=cds-WP_000948902.1;Parent=gene-CFSAN001082_RS34680;Dbxref=GenBank:WP_000948902.1;Name=WP_000948902.1;Ontology_term=GO:0005524;gbkey=CDS;gene=sufC;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008500629.1;locus_tag=CFSAN001082_RS34680;product=Fe-S cluster assembly ATPase SufC;protein_id=WP_000948902.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	12088	13359	.	+	.	ID=gene-CFSAN001082_RS34685;Name=sufD;gbkey=Gene;gene=sufD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34685;old_locus_tag=CFSAN001082_10922
NZ_APAH01000209.1	Protein Homology	CDS	12088	13359	.	+	0	ID=cds-WP_023254315.1;Parent=gene-CFSAN001082_RS34685;Dbxref=GenBank:WP_023254315.1;Name=WP_023254315.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufD;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460337.1;locus_tag=CFSAN001082_RS34685;product=Fe-S cluster assembly protein SufD;protein_id=WP_023254315.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	13356	14576	.	+	.	ID=gene-CFSAN001082_RS34690;Name=sufS;gbkey=Gene;gene=sufS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34690;old_locus_tag=CFSAN001082_10927
NZ_APAH01000209.1	Protein Homology	CDS	13356	14576	.	+	0	ID=cds-WP_000143859.1;Parent=gene-CFSAN001082_RS34690;Dbxref=GenBank:WP_000143859.1;Name=WP_000143859.1;Ontology_term=GO:0006534,GO:0030170,GO:0031071;gbkey=CDS;gene=sufS;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine desulfurase activity|0031071||IEA;go_process=cysteine metabolic process|0006534||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460338.1;locus_tag=CFSAN001082_RS34690;product=cysteine desulfurase SufS;protein_id=WP_000143859.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	14589	15005	.	+	.	ID=gene-CFSAN001082_RS34695;Name=sufE;gbkey=Gene;gene=sufE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34695;old_locus_tag=CFSAN001082_10932
NZ_APAH01000209.1	Protein Homology	CDS	14589	15005	.	+	0	ID=cds-WP_000729468.1;Parent=gene-CFSAN001082_RS34695;Dbxref=GenBank:WP_000729468.1;Name=WP_000729468.1;gbkey=CDS;gene=sufE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460339.1;locus_tag=CFSAN001082_RS34695;product=cysteine desulfuration protein SufE;protein_id=WP_000729468.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	15160	16161	.	+	.	ID=gene-CFSAN001082_RS34700;Name=ldtE;gbkey=Gene;gene=ldtE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34700;old_locus_tag=CFSAN001082_10937
NZ_APAH01000209.1	Protein Homology	CDS	15160	16161	.	+	0	ID=cds-WP_000817060.1;Parent=gene-CFSAN001082_RS34700;Dbxref=GenBank:WP_000817060.1;Name=WP_000817060.1;Ontology_term=GO:0009252,GO:0018104,GO:0016757,GO:0071972;gbkey=CDS;gene=ldtE;go_function=glycosyltransferase activity|0016757||IEA,peptidoglycan L%2CD-transpeptidase activity|0071972||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,peptidoglycan-protein cross-linking|0018104||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460340.1;locus_tag=CFSAN001082_RS34700;product=L%2CD-transpeptidase LdtE;protein_id=WP_000817060.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	16228	16467	.	-	.	ID=gene-CFSAN001082_RS34705;Name=CFSAN001082_RS34705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34705;old_locus_tag=CFSAN001082_10942
NZ_APAH01000209.1	Protein Homology	CDS	16228	16467	.	-	0	ID=cds-WP_023254316.1;Parent=gene-CFSAN001082_RS34705;Dbxref=GenBank:WP_023254316.1;Name=WP_023254316.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460341.1;locus_tag=CFSAN001082_RS34705;product=major outer membrane lipoprotein;protein_id=WP_023254316.1;transl_table=11
NZ_APAH01000209.1	RefSeq	gene	16550	16786	.	-	.	ID=gene-CFSAN001082_RS34710;Name=lpp;gbkey=Gene;gene=lpp;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34710;old_locus_tag=CFSAN001082_10947
NZ_APAH01000209.1	Protein Homology	CDS	16550	16786	.	-	0	ID=cds-WP_001082307.1;Parent=gene-CFSAN001082_RS34710;Dbxref=GenBank:WP_001082307.1;Name=WP_001082307.1;gbkey=CDS;gene=lpp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460342.1;locus_tag=CFSAN001082_RS34710;product=murein lipoprotein Lpp;protein_id=WP_001082307.1;transl_table=11
##sequence-region NZ_APAH01000210.1 1 398
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000210.1	RefSeq	region	1	398	.	+	.	ID=NZ_APAH01000210.1:1..398;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000211.1 1 6518
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000211.1	RefSeq	region	1	6518	.	+	.	ID=NZ_APAH01000211.1:1..6518;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000211.1	RefSeq	gene	1	437	.	-	.	ID=gene-CFSAN001082_RS34720;Name=CFSAN001082_RS34720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34720;old_locus_tag=CFSAN001082_10957;partial=true;start_range=.,1
NZ_APAH01000211.1	Protein Homology	CDS	1	437	.	-	0	ID=cds-WP_024150285.1;Parent=gene-CFSAN001082_RS34720;Dbxref=GenBank:WP_024150285.1;Name=WP_024150285.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463175.1;locus_tag=CFSAN001082_RS34720;partial=true;product=SdiA-regulated domain-containing protein;protein_id=WP_024150285.1;start_range=.,1;transl_table=11
NZ_APAH01000211.1	RefSeq	gene	741	2141	.	+	.	ID=gene-CFSAN001082_RS34725;Name=CFSAN001082_RS34725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34725;old_locus_tag=CFSAN001082_10962
NZ_APAH01000211.1	Protein Homology	CDS	741	2141	.	+	0	ID=cds-WP_023254318.1;Parent=gene-CFSAN001082_RS34725;Dbxref=GenBank:WP_023254318.1;Name=WP_023254318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463174.1;locus_tag=CFSAN001082_RS34725;product=DUF7594 domain-containing protein;protein_id=WP_023254318.1;transl_table=11
NZ_APAH01000211.1	RefSeq	gene	2225	2818	.	-	.	ID=gene-CFSAN001082_RS34730;Name=CFSAN001082_RS34730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34730;old_locus_tag=CFSAN001082_10967
NZ_APAH01000211.1	Protein Homology	CDS	2225	2818	.	-	0	ID=cds-WP_023254319.1;Parent=gene-CFSAN001082_RS34730;Dbxref=GenBank:WP_023254319.1;Name=WP_023254319.1;Ontology_term=GO:0061077;gbkey=CDS;go_process=chaperone-mediated protein folding|0061077||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001629474.1;locus_tag=CFSAN001082_RS34730;product=TorD/DmsD family molecular chaperone;protein_id=WP_023254319.1;transl_table=11
NZ_APAH01000211.1	RefSeq	gene	2894	3667	.	-	.	ID=gene-CFSAN001082_RS34735;Name=CFSAN001082_RS34735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34735;old_locus_tag=CFSAN001082_10972
NZ_APAH01000211.1	Protein Homology	CDS	2894	3667	.	-	0	ID=cds-WP_020839691.1;Parent=gene-CFSAN001082_RS34735;Dbxref=GenBank:WP_020839691.1;Name=WP_020839691.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463172.1;locus_tag=CFSAN001082_RS34735;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_020839691.1;transl_table=11
NZ_APAH01000211.1	RefSeq	gene	3660	4286	.	-	.	ID=gene-CFSAN001082_RS34740;Name=CFSAN001082_RS34740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34740;old_locus_tag=CFSAN001082_10977
NZ_APAH01000211.1	Protein Homology	CDS	3660	4286	.	-	0	ID=cds-WP_000816143.1;Parent=gene-CFSAN001082_RS34740;Dbxref=GenBank:WP_000816143.1;Name=WP_000816143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463171.1;locus_tag=CFSAN001082_RS34740;product=DMSO/selenate family reductase complex B subunit;protein_id=WP_000816143.1;transl_table=11
NZ_APAH01000211.1	RefSeq	gene	4300	6518	.	-	.	ID=gene-CFSAN001082_RS34745;Name=CFSAN001082_RS34745;end_range=6518,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34745;old_locus_tag=CFSAN001082_10982;partial=true
NZ_APAH01000211.1	Protein Homology	CDS	4300	6518	.	-	2	ID=cds-WP_023254320.1;Parent=gene-CFSAN001082_RS34745;Dbxref=GenBank:WP_023254320.1;Name=WP_023254320.1;Ontology_term=GO:0009389,GO:0030151,GO:0051539;end_range=6518,.;gbkey=CDS;go_function=dimethyl sulfoxide reductase activity|0009389||IEA,molybdenum ion binding|0030151||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000403483.1;locus_tag=CFSAN001082_RS34745;partial=true;product=DMSO/selenate family reductase complex A subunit;protein_id=WP_023254320.1;transl_table=11
##sequence-region NZ_APAH01000212.1 1 6659
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000212.1	RefSeq	region	1	6659	.	+	.	ID=NZ_APAH01000212.1:1..6659;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000212.1	RefSeq	gene	76	306	.	+	.	ID=gene-CFSAN001082_RS0123460;Name=chaB;gbkey=Gene;gene=chaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123460;old_locus_tag=CFSAN001082_10987
NZ_APAH01000212.1	Protein Homology	CDS	76	306	.	+	0	ID=cds-WP_001146392.1;Parent=gene-CFSAN001082_RS0123460;Dbxref=GenBank:WP_001146392.1;Name=WP_001146392.1;gbkey=CDS;gene=chaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460726.1;locus_tag=CFSAN001082_RS0123460;product=putative cation transport regulator ChaB;protein_id=WP_001146392.1;transl_table=11
NZ_APAH01000212.1	RefSeq	gene	386	739	.	-	.	ID=gene-CFSAN001082_RS34750;Name=CFSAN001082_RS34750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34750;old_locus_tag=CFSAN001082_10992
NZ_APAH01000212.1	Protein Homology	CDS	386	739	.	-	0	ID=cds-WP_001179794.1;Parent=gene-CFSAN001082_RS34750;Dbxref=GenBank:WP_001179794.1;Name=WP_001179794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460725.1;locus_tag=CFSAN001082_RS34750;product=DsrE/DsrF/TusD sulfur relay family protein;protein_id=WP_001179794.1;transl_table=11
NZ_APAH01000212.1	RefSeq	gene	916	2340	.	+	.	ID=gene-CFSAN001082_RS34755;Name=CFSAN001082_RS34755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34755;old_locus_tag=CFSAN001082_10997
NZ_APAH01000212.1	Protein Homology	CDS	916	2340	.	+	0	ID=cds-WP_024150286.1;Parent=gene-CFSAN001082_RS34755;Dbxref=GenBank:WP_024150286.1;Name=WP_024150286.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460724.3;locus_tag=CFSAN001082_RS34755;product=YchO/YchP family invasin;protein_id=WP_024150286.1;transl_table=11
NZ_APAH01000212.1	RefSeq	gene	2341	2991	.	-	.	ID=gene-CFSAN001082_RS34760;Name=narL;gbkey=Gene;gene=narL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34760;old_locus_tag=CFSAN001082_11002
NZ_APAH01000212.1	Protein Homology	CDS	2341	2991	.	-	0	ID=cds-WP_001064598.1;Parent=gene-CFSAN001082_RS34760;Dbxref=GenBank:WP_001064598.1;Name=WP_001064598.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=narL;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460723.1;locus_tag=CFSAN001082_RS34760;product=two-component system response regulator NarL;protein_id=WP_001064598.1;transl_table=11
NZ_APAH01000212.1	RefSeq	gene	2984	4780	.	-	.	ID=gene-CFSAN001082_RS34765;Name=narX;gbkey=Gene;gene=narX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34765;old_locus_tag=CFSAN001082_11007
NZ_APAH01000212.1	Protein Homology	CDS	2984	4780	.	-	0	ID=cds-WP_000476244.1;Parent=gene-CFSAN001082_RS34765;Dbxref=GenBank:WP_000476244.1;Name=WP_000476244.1;Ontology_term=GO:0000160,GO:0000155,GO:0046983,GO:0016020;gbkey=CDS;gene=narX;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein dimerization activity|0046983||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460722.1;locus_tag=CFSAN001082_RS34765;product=nitrate/nitrite two-component system sensor histidine kinase NarX;protein_id=WP_000476244.1;transl_table=11
NZ_APAH01000212.1	RefSeq	gene	5121	6518	.	+	.	ID=gene-CFSAN001082_RS34770;Name=narK;gbkey=Gene;gene=narK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34770;old_locus_tag=CFSAN001082_11012
NZ_APAH01000212.1	Protein Homology	CDS	5121	6518	.	+	0	ID=cds-WP_000019848.1;Parent=gene-CFSAN001082_RS34770;Dbxref=GenBank:WP_000019848.1;Name=WP_000019848.1;gbkey=CDS;gene=narK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460721.1;locus_tag=CFSAN001082_RS34770;product=nitrate transporter NarK;protein_id=WP_000019848.1;transl_table=11
##sequence-region NZ_APAH01000213.1 1 1460
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000213.1	RefSeq	region	1	1460	.	+	.	ID=NZ_APAH01000213.1:1..1460;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000213.1	RefSeq	gene	1	1128	.	+	.	ID=gene-CFSAN001082_RS34775;Name=ompS1;gbkey=Gene;gene=ompS1;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34775;old_locus_tag=CFSAN001082_11017;partial=true;start_range=.,1
NZ_APAH01000213.1	Protein Homology	CDS	1	1128	.	+	0	ID=cds-WP_023254323.1;Parent=gene-CFSAN001082_RS34775;Dbxref=GenBank:WP_023254323.1;Name=WP_023254323.1;gbkey=CDS;gene=ompS1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460946.1;locus_tag=CFSAN001082_RS34775;partial=true;product=porin OmpS1;protein_id=WP_023254323.1;start_range=.,1;transl_table=11
NZ_APAH01000213.1	RefSeq	gene	1387	1455	.	-	.	ID=gene-CFSAN001082_RS49220;Name=CFSAN001082_RS49220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49220
NZ_APAH01000213.1	Protein Homology	CDS	1387	1455	.	-	0	ID=cds-WP_424815878.1;Parent=gene-CFSAN001082_RS49220;Dbxref=GenBank:WP_424815878.1;Name=WP_424815878.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049533.1;locus_tag=CFSAN001082_RS49220;product=hypothetical protein;protein_id=WP_424815878.1;transl_table=11
##sequence-region NZ_APAH01000214.1 1 227
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000214.1	RefSeq	region	1	227	.	+	.	ID=NZ_APAH01000214.1:1..227;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000214.1	RefSeq	gene	1	227	.	-	.	ID=gene-CFSAN001082_RS34780;Name=CFSAN001082_RS34780;end_range=227,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34780;old_locus_tag=CFSAN001082_11022;partial=true;start_range=.,1
NZ_APAH01000214.1	Protein Homology	CDS	1	227	.	-	1	ID=cds-WP_023254324.1;Parent=gene-CFSAN001082_RS34780;Dbxref=GenBank:WP_023254324.1;Name=WP_023254324.1;Ontology_term=GO:0006355;end_range=227,.;gbkey=CDS;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460935.1;locus_tag=CFSAN001082_RS34780;partial=true;product=LuxR C-terminal-related transcriptional regulator;protein_id=WP_023254324.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000215.1 1 21182
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000215.1	RefSeq	region	1	21182	.	+	.	ID=NZ_APAH01000215.1:1..21182;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000215.1	RefSeq	gene	1	663	.	-	.	ID=gene-CFSAN001082_RS0123465;Name=CFSAN001082_RS0123465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123465;old_locus_tag=CFSAN001082_11027;partial=true;start_range=.,1
NZ_APAH01000215.1	Protein Homology	CDS	1	663	.	-	0	ID=cds-WP_023254325.1;Parent=gene-CFSAN001082_RS0123465;Dbxref=GenBank:WP_023254325.1;Name=WP_023254325.1;Ontology_term=GO:0030655,GO:0008800;gbkey=CDS;go_function=beta-lactamase activity|0008800||IEA;go_process=beta-lactam antibiotic catabolic process|0030655||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459840.1;locus_tag=CFSAN001082_RS0123465;partial=true;product=serine hydrolase;protein_id=WP_023254325.1;start_range=.,1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	907	1533	.	+	.	ID=gene-CFSAN001082_RS34785;Name=CFSAN001082_RS34785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34785;old_locus_tag=CFSAN001082_11032
NZ_APAH01000215.1	Protein Homology	CDS	907	1533	.	+	0	ID=cds-WP_000631902.1;Parent=gene-CFSAN001082_RS34785;Dbxref=GenBank:WP_000631902.1;Name=WP_000631902.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459839.1;locus_tag=CFSAN001082_RS34785;product=glutathione S-transferase family protein;protein_id=WP_000631902.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	1530	2651	.	-	.	ID=gene-CFSAN001082_RS34790;Name=CFSAN001082_RS34790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34790;old_locus_tag=CFSAN001082_11037
NZ_APAH01000215.1	Protein Homology	CDS	1530	2651	.	-	0	ID=cds-WP_023254326.1;Parent=gene-CFSAN001082_RS34790;Dbxref=GenBank:WP_023254326.1;Name=WP_023254326.1;Ontology_term=GO:0016901,GO:0070968;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C quinone or similar compound as acceptor|0016901||IEA,pyrroloquinoline quinone binding|0070968||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001252732.1;locus_tag=CFSAN001082_RS34790;product=PQQ-dependent sugar dehydrogenase;protein_id=WP_023254326.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	2768	3151	.	-	.	ID=gene-CFSAN001082_RS34795;Name=bssR;gbkey=Gene;gene=bssR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34795;old_locus_tag=CFSAN001082_11042
NZ_APAH01000215.1	Protein Homology	CDS	2768	3151	.	-	0	ID=cds-WP_023203673.1;Parent=gene-CFSAN001082_RS34795;Dbxref=GenBank:WP_023203673.1;Name=WP_023203673.1;gbkey=CDS;gene=bssR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459830.1;locus_tag=CFSAN001082_RS34795;product=biofilm formation regulator BssR;protein_id=WP_023203673.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	3382	4707	.	+	.	ID=gene-CFSAN001082_RS34800;Name=rimO;gbkey=Gene;gene=rimO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34800;old_locus_tag=CFSAN001082_11047
NZ_APAH01000215.1	Protein Homology	CDS	3382	4707	.	+	0	ID=cds-WP_000073317.1;Parent=gene-CFSAN001082_RS34800;Dbxref=GenBank:WP_000073317.1;Name=WP_000073317.1;Ontology_term=GO:0018339,GO:0008172,GO:0016740,GO:0016782,GO:0051539,GO:1904047,GO:0005737;gbkey=CDS;gene=rimO;go_component=cytoplasm|0005737||IEA;go_function=S-methyltransferase activity|0008172||IEA,transferase activity|0016740||IEA,transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid|0018339||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459829.1;locus_tag=CFSAN001082_RS34800;product=30S ribosomal protein S12 methylthiotransferase RimO;protein_id=WP_000073317.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	4798	5709	.	-	.	ID=gene-CFSAN001082_RS34805;Name=gsiD;gbkey=Gene;gene=gsiD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34805;old_locus_tag=CFSAN001082_11052
NZ_APAH01000215.1	Protein Homology	CDS	4798	5709	.	-	0	ID=cds-WP_001236024.1;Parent=gene-CFSAN001082_RS34805;Dbxref=GenBank:WP_001236024.1;Name=WP_001236024.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=gsiD;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459828.1;locus_tag=CFSAN001082_RS34805;product=glutathione ABC transporter permease GsiD;protein_id=WP_001236024.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	5712	6632	.	-	.	ID=gene-CFSAN001082_RS34810;Name=gsiC;gbkey=Gene;gene=gsiC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34810;old_locus_tag=CFSAN001082_11057
NZ_APAH01000215.1	Protein Homology	CDS	5712	6632	.	-	0	ID=cds-WP_000936067.1;Parent=gene-CFSAN001082_RS34810;Dbxref=GenBank:WP_000936067.1;Name=WP_000936067.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=gsiC;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459827.1;locus_tag=CFSAN001082_RS34810;product=glutathione ABC transporter permease GsiC;protein_id=WP_000936067.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	6693	8231	.	-	.	ID=gene-CFSAN001082_RS34815;Name=gsiB;gbkey=Gene;gene=gsiB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34815;old_locus_tag=CFSAN001082_11062
NZ_APAH01000215.1	Protein Homology	CDS	6693	8231	.	-	0	ID=cds-WP_000191427.1;Parent=gene-CFSAN001082_RS34815;Dbxref=GenBank:WP_000191427.1;Name=WP_000191427.1;Ontology_term=GO:0034775,GO:0034634,GO:0043190;gbkey=CDS;gene=gsiB;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=glutathione transmembrane transporter activity|0034634||IEA;go_process=glutathione transmembrane transport|0034775||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459826.1;locus_tag=CFSAN001082_RS34815;product=glutathione ABC transporter substrate-binding protein GsiB;protein_id=WP_000191427.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	8264	10135	.	-	.	ID=gene-CFSAN001082_RS34820;Name=gsiA;gbkey=Gene;gene=gsiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34820;old_locus_tag=CFSAN001082_11067
NZ_APAH01000215.1	Protein Homology	CDS	8264	10135	.	-	0	ID=cds-WP_001120589.1;Parent=gene-CFSAN001082_RS34820;Dbxref=GenBank:WP_001120589.1;Name=WP_001120589.1;Ontology_term=GO:0006810,GO:0000166,GO:0005524;gbkey=CDS;gene=gsiA;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459825.1;locus_tag=CFSAN001082_RS34820;product=glutathione ABC transporter ATP-binding protein GsiA;protein_id=WP_001120589.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	10146	11087	.	-	.	ID=gene-CFSAN001082_RS34825;Name=iaaA;gbkey=Gene;gene=iaaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34825;old_locus_tag=CFSAN001082_11072
NZ_APAH01000215.1	Protein Homology	CDS	10146	11087	.	-	0	ID=cds-WP_001030503.1;Parent=gene-CFSAN001082_RS34825;Dbxref=GenBank:WP_001030503.1;Name=WP_001030503.1;gbkey=CDS;gene=iaaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459824.1;locus_tag=CFSAN001082_RS34825;product=beta-aspartyl-peptidase;protein_id=WP_001030503.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	11291	12526	.	+	.	ID=gene-CFSAN001082_RS34830;Name=moeA;gbkey=Gene;gene=moeA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34830;old_locus_tag=CFSAN001082_11077
NZ_APAH01000215.1	Protein Homology	CDS	11291	12526	.	+	0	ID=cds-WP_000395792.1;Parent=gene-CFSAN001082_RS34830;Dbxref=GenBank:WP_000395792.1;Name=WP_000395792.1;Ontology_term=GO:0006777,GO:0032324;gbkey=CDS;gene=moeA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA,molybdopterin cofactor biosynthetic process|0032324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308932.1;locus_tag=CFSAN001082_RS34830;product=molybdopterin molybdotransferase MoeA;protein_id=WP_000395792.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	12526	13275	.	+	.	ID=gene-CFSAN001082_RS34835;Name=moeB;gbkey=Gene;gene=moeB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34835;old_locus_tag=CFSAN001082_11082
NZ_APAH01000215.1	Protein Homology	CDS	12526	13275	.	+	0	ID=cds-WP_000829280.1;Parent=gene-CFSAN001082_RS34835;Dbxref=GenBank:WP_000829280.1;Name=WP_000829280.1;Ontology_term=GO:0006777,GO:0008641;gbkey=CDS;gene=moeB;go_function=ubiquitin-like modifier activating enzyme activity|0008641||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459822.1;locus_tag=CFSAN001082_RS34835;product=molybdopterin-synthase adenylyltransferase MoeB;protein_id=WP_000829280.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	13553	14452	.	+	.	ID=gene-CFSAN001082_RS34840;Name=CFSAN001082_RS34840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34840;old_locus_tag=CFSAN001082_11087
NZ_APAH01000215.1	Protein Homology	CDS	13553	14452	.	+	0	ID=cds-WP_023254327.1;Parent=gene-CFSAN001082_RS34840;Dbxref=GenBank:WP_023254327.1;Name=WP_023254327.1;Ontology_term=GO:0043687,GO:0051539,GO:1904047;gbkey=CDS;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=post-translational protein modification|0043687||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459821.1;locus_tag=CFSAN001082_RS34840;product=glycyl-radical enzyme activating protein;protein_id=WP_023254327.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	14458	16890	.	+	.	ID=gene-CFSAN001082_RS34845;Name=CFSAN001082_RS34845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34845;old_locus_tag=CFSAN001082_11092
NZ_APAH01000215.1	Protein Homology	CDS	14458	16890	.	+	0	ID=cds-WP_000192661.1;Parent=gene-CFSAN001082_RS34845;Dbxref=GenBank:WP_000192661.1;Name=WP_000192661.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459820.1;locus_tag=CFSAN001082_RS34845;product=glycyl radical protein;protein_id=WP_000192661.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	16968	17777	.	-	.	ID=gene-CFSAN001082_RS34850;Name=CFSAN001082_RS34850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34850;old_locus_tag=CFSAN001082_11097
NZ_APAH01000215.1	Protein Homology	CDS	16968	17777	.	-	0	ID=cds-WP_000217910.1;Parent=gene-CFSAN001082_RS34850;Dbxref=GenBank:WP_000217910.1;Name=WP_000217910.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459819.1;locus_tag=CFSAN001082_RS34850;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_000217910.1;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	18039	19304	.	+	.	ID=gene-CFSAN001082_RS34855;Name=CFSAN001082_RS34855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34855;old_locus_tag=CFSAN001082_11102
NZ_APAH01000215.1	Protein Homology	CDS	18039	19304	.	+	0	ID=cds-WP_023254328.1;Parent=gene-CFSAN001082_RS34855;Dbxref=GenBank:WP_023254328.1;Name=WP_023254328.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459818.1;locus_tag=CFSAN001082_RS34855;product=DUF1479 domain-containing protein;protein_id=WP_023254328.1;transl_table=11
NZ_APAH01000215.1	RefSeq	pseudogene	19426	19503	.	-	.	ID=gene-CFSAN001082_RS49225;Name=CFSAN001082_RS49225;end_range=19503,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49225;partial=true;pseudo=true
NZ_APAH01000215.1	Protein Homology	CDS	19426	19503	.	-	0	ID=cds-CFSAN001082_RS49225;Parent=gene-CFSAN001082_RS49225;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=19503,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000961428.1;locus_tag=CFSAN001082_RS49225;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000215.1	RefSeq	pseudogene	19511	20227	.	+	.	ID=gene-CFSAN001082_RS34860;Name=CFSAN001082_RS34860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS34860;old_locus_tag=CFSAN001082_11107;partial=true;pseudo=true;start_range=.,19511
NZ_APAH01000215.1	Protein Homology	CDS	19511	20227	.	+	0	ID=cds-CFSAN001082_RS34860;Parent=gene-CFSAN001082_RS34860;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000114249.1;locus_tag=CFSAN001082_RS34860;partial=true;product=Cof-type HAD-IIB family hydrolase;pseudo=true;start_range=.,19511;transl_table=11
NZ_APAH01000215.1	RefSeq	gene	20256	20999	.	-	.	ID=gene-CFSAN001082_RS34865;Name=CFSAN001082_RS34865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34865;old_locus_tag=CFSAN001082_11112
NZ_APAH01000215.1	Protein Homology	CDS	20256	20999	.	-	0	ID=cds-WP_010988985.1;Parent=gene-CFSAN001082_RS34865;Dbxref=GenBank:WP_010988985.1;Name=WP_010988985.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459816.1;locus_tag=CFSAN001082_RS34865;product=DUF4261 domain-containing protein;protein_id=WP_010988985.1;transl_table=11
##sequence-region NZ_APAH01000216.1 1 6684
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000216.1	RefSeq	region	1	6684	.	+	.	ID=NZ_APAH01000216.1:1..6684;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000216.1	RefSeq	gene	367	1188	.	-	.	ID=gene-CFSAN001082_RS34870;Name=dapB;gbkey=Gene;gene=dapB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34870;old_locus_tag=CFSAN001082_11117
NZ_APAH01000216.1	Protein Homology	CDS	367	1188	.	-	0	ID=cds-WP_023218429.1;Parent=gene-CFSAN001082_RS34870;Dbxref=GenBank:WP_023218429.1;Name=WP_023218429.1;Ontology_term=GO:0009089,GO:0008839;gbkey=CDS;gene=dapB;go_function=4-hydroxy-tetrahydrodipicolinate reductase|0008839||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459069.1;locus_tag=CFSAN001082_RS34870;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=WP_023218429.1;transl_table=11
NZ_APAH01000216.1	RefSeq	gene	1368	2276	.	-	.	ID=gene-CFSAN001082_RS34875;Name=citG;gbkey=Gene;gene=citG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34875;old_locus_tag=CFSAN001082_11122
NZ_APAH01000216.1	Protein Homology	CDS	1368	2276	.	-	0	ID=cds-WP_023254330.1;Parent=gene-CFSAN001082_RS34875;Dbxref=GenBank:WP_023254330.1;Name=WP_023254330.1;Ontology_term=GO:0016310,GO:0019361,GO:0005524,GO:0046917;gbkey=CDS;gene=citG;go_function=ATP binding|0005524||IEA,triphosphoribosyl-dephospho-CoA synthase activity|0046917||IEA;go_process=phosphorylation|0016310||IEA,2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthetic process|0019361||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459068.1;locus_tag=CFSAN001082_RS34875;product=triphosphoribosyl-dephospho-CoA synthase CitG;protein_id=WP_023254330.1;transl_table=11
NZ_APAH01000216.1	RefSeq	gene	2254	2805	.	-	.	ID=gene-CFSAN001082_RS34880;Name=citX;gbkey=Gene;gene=citX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34880;old_locus_tag=CFSAN001082_11127
NZ_APAH01000216.1	Protein Homology	CDS	2254	2805	.	-	0	ID=cds-WP_023254331.1;Parent=gene-CFSAN001082_RS34880;Dbxref=GenBank:WP_023254331.1;Name=WP_023254331.1;Ontology_term=GO:0051191,GO:0050519;gbkey=CDS;gene=citX;go_function=holo-citrate lyase synthase activity|0050519||IEA;go_process=prosthetic group biosynthetic process|0051191||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459067.1;locus_tag=CFSAN001082_RS34880;product=citrate lyase holo-[acyl-carrier protein] synthase;protein_id=WP_023254331.1;transl_table=11
NZ_APAH01000216.1	RefSeq	gene	2805	4325	.	-	.	ID=gene-CFSAN001082_RS34885;Name=citF;gbkey=Gene;gene=citF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34885;old_locus_tag=CFSAN001082_11132
NZ_APAH01000216.1	Protein Homology	CDS	2805	4325	.	-	0	ID=cds-WP_023224449.1;Parent=gene-CFSAN001082_RS34885;Dbxref=GenBank:WP_023224449.1;Name=WP_023224449.1;Ontology_term=GO:0006113,GO:0008814,GO:0008815,GO:0009346;gbkey=CDS;gene=citF;go_component=ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate CoA-transferase activity|0008814||IEA,citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459066.1;locus_tag=CFSAN001082_RS34885;product=citrate lyase subunit alpha;protein_id=WP_023224449.1;transl_table=11
NZ_APAH01000216.1	RefSeq	gene	4336	5205	.	-	.	ID=gene-CFSAN001082_RS34890;Name=citE;gbkey=Gene;gene=citE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34890;old_locus_tag=CFSAN001082_11137
NZ_APAH01000216.1	Protein Homology	CDS	4336	5205	.	-	0	ID=cds-WP_023254332.1;Parent=gene-CFSAN001082_RS34890;Dbxref=GenBank:WP_023254332.1;Name=WP_023254332.1;Ontology_term=GO:0006084,GO:0006113,GO:0008815,GO:0005737,GO:0009346;gbkey=CDS;gene=citE;go_component=cytoplasm|0005737||IEA,ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate (pro-3S)-lyase activity|0008815||IEA;go_process=acetyl-CoA metabolic process|0006084||IEA,fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459065.1;locus_tag=CFSAN001082_RS34890;product=citrate (pro-3S)-lyase subunit beta;protein_id=WP_023254332.1;transl_table=11
NZ_APAH01000216.1	RefSeq	gene	5202	5495	.	-	.	ID=gene-CFSAN001082_RS34895;Name=citD;gbkey=Gene;gene=citD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34895;old_locus_tag=CFSAN001082_11142
NZ_APAH01000216.1	Protein Homology	CDS	5202	5495	.	-	0	ID=cds-WP_000691461.1;Parent=gene-CFSAN001082_RS34895;Dbxref=GenBank:WP_000691461.1;Name=WP_000691461.1;Ontology_term=GO:0006113,GO:0008815,GO:0005737,GO:0009346;gbkey=CDS;gene=citD;go_component=cytoplasm|0005737||IEA,ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459064.1;locus_tag=CFSAN001082_RS34895;product=citrate lyase acyl carrier protein;protein_id=WP_000691461.1;transl_table=11
NZ_APAH01000216.1	RefSeq	gene	5525	6568	.	-	.	ID=gene-CFSAN001082_RS34900;Name=citC;gbkey=Gene;gene=citC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34900;old_locus_tag=CFSAN001082_11147
NZ_APAH01000216.1	Protein Homology	CDS	5525	6568	.	-	0	ID=cds-WP_001181444.1;Parent=gene-CFSAN001082_RS34900;Dbxref=GenBank:WP_001181444.1;Name=WP_001181444.1;Ontology_term=GO:0006101,GO:0008771;gbkey=CDS;gene=citC;go_function=[citrate (pro-3S)-lyase] ligase activity|0008771||IEA;go_process=citrate metabolic process|0006101||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459063.1;locus_tag=CFSAN001082_RS34900;product=[citrate (pro-3S)-lyase] ligase;protein_id=WP_001181444.1;transl_table=11
##sequence-region NZ_APAH01000217.1 1 7181
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000217.1	RefSeq	region	1	7181	.	+	.	ID=NZ_APAH01000217.1:1..7181;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000217.1	RefSeq	gene	1	612	.	+	.	ID=gene-CFSAN001082_RS34905;Name=CFSAN001082_RS34905;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS34905;old_locus_tag=CFSAN001082_r11179;partial=true;start_range=.,1
NZ_APAH01000217.1	cmsearch	rRNA	1	612	.	+	.	ID=rna-CFSAN001082_RS34905;Parent=gene-CFSAN001082_RS34905;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS34905;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_APAH01000217.1	cmsearch	exon	1	612	.	+	.	ID=exon-CFSAN001082_RS34905-1;Parent=rna-CFSAN001082_RS34905;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS34905;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_APAH01000217.1	RefSeq	gene	809	924	.	+	.	ID=gene-CFSAN001082_RS34910;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=CFSAN001082_RS34910;old_locus_tag=CFSAN001082_r11173
NZ_APAH01000217.1	cmsearch	rRNA	809	924	.	+	.	ID=rna-CFSAN001082_RS34910;Parent=gene-CFSAN001082_RS34910;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS34910;product=5S ribosomal RNA
NZ_APAH01000217.1	cmsearch	exon	809	924	.	+	.	ID=exon-CFSAN001082_RS34910-1;Parent=rna-CFSAN001082_RS34910;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS34910;product=5S ribosomal RNA
NZ_APAH01000217.1	RefSeq	gene	939	1014	.	+	.	ID=gene-CFSAN001082_RS34915;Name=CFSAN001082_RS34915;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS34915;old_locus_tag=CFSAN001082_t11169
NZ_APAH01000217.1	tRNAscan-SE	tRNA	939	1014	.	+	.	ID=rna-CFSAN001082_RS34915;Parent=gene-CFSAN001082_RS34915;anticodon=(pos:972..974);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS34915;product=tRNA-Thr
NZ_APAH01000217.1	tRNAscan-SE	exon	939	1014	.	+	.	ID=exon-CFSAN001082_RS34915-1;Parent=rna-CFSAN001082_RS34915;anticodon=(pos:972..974);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS34915;product=tRNA-Thr
NZ_APAH01000217.1	RefSeq	gene	1054	1169	.	+	.	ID=gene-CFSAN001082_RS34920;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=CFSAN001082_RS34920;old_locus_tag=CFSAN001082_r11175
NZ_APAH01000217.1	cmsearch	rRNA	1054	1169	.	+	.	ID=rna-CFSAN001082_RS34920;Parent=gene-CFSAN001082_RS34920;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS34920;product=5S ribosomal RNA
NZ_APAH01000217.1	cmsearch	exon	1054	1169	.	+	.	ID=exon-CFSAN001082_RS34920-1;Parent=rna-CFSAN001082_RS34920;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS34920;product=5S ribosomal RNA
NZ_APAH01000217.1	RefSeq	gene	1184	1259	.	+	.	ID=gene-CFSAN001082_RS34925;Name=CFSAN001082_RS34925;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS34925;old_locus_tag=CFSAN001082_t11171
NZ_APAH01000217.1	tRNAscan-SE	tRNA	1184	1259	.	+	.	ID=rna-CFSAN001082_RS34925;Parent=gene-CFSAN001082_RS34925;anticodon=(pos:1217..1219);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS34925;product=tRNA-Thr
NZ_APAH01000217.1	tRNAscan-SE	exon	1184	1259	.	+	.	ID=exon-CFSAN001082_RS34925-1;Parent=rna-CFSAN001082_RS34925;anticodon=(pos:1217..1219);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS34925;product=tRNA-Thr
NZ_APAH01000217.1	RefSeq	gene	1299	1414	.	+	.	ID=gene-CFSAN001082_RS34930;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=CFSAN001082_RS34930;old_locus_tag=CFSAN001082_r11177
NZ_APAH01000217.1	cmsearch	rRNA	1299	1414	.	+	.	ID=rna-CFSAN001082_RS34930;Parent=gene-CFSAN001082_RS34930;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS34930;product=5S ribosomal RNA
NZ_APAH01000217.1	cmsearch	exon	1299	1414	.	+	.	ID=exon-CFSAN001082_RS34930-1;Parent=rna-CFSAN001082_RS34930;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS34930;product=5S ribosomal RNA
NZ_APAH01000217.1	RefSeq	gene	2199	2420	.	-	.	ID=gene-CFSAN001082_RS34935;Name=CFSAN001082_RS34935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34935;old_locus_tag=CFSAN001082_11152
NZ_APAH01000217.1	Protein Homology	CDS	2199	2420	.	-	0	ID=cds-WP_000825645.1;Parent=gene-CFSAN001082_RS34935;Dbxref=GenBank:WP_000825645.1;Name=WP_000825645.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462302.1;locus_tag=CFSAN001082_RS34935;product=membrane protein;protein_id=WP_000825645.1;transl_table=11
NZ_APAH01000217.1	RefSeq	gene	2658	5771	.	-	.	ID=gene-CFSAN001082_RS34940;Name=CFSAN001082_RS34940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34940;old_locus_tag=CFSAN001082_11157
NZ_APAH01000217.1	Protein Homology	CDS	2658	5771	.	-	0	ID=cds-WP_001273292.1;Parent=gene-CFSAN001082_RS34940;Dbxref=GenBank:WP_001273292.1;Name=WP_001273292.1;Ontology_term=GO:0042908,GO:0015562,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=xenobiotic transport|0042908||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462301.1;locus_tag=CFSAN001082_RS34940;product=efflux RND transporter permease subunit;protein_id=WP_001273292.1;transl_table=11
NZ_APAH01000217.1	RefSeq	gene	5783	6940	.	-	.	ID=gene-CFSAN001082_RS34945;Name=CFSAN001082_RS34945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34945;old_locus_tag=CFSAN001082_11162
NZ_APAH01000217.1	Protein Homology	CDS	5783	6940	.	-	0	ID=cds-WP_000160383.1;Parent=gene-CFSAN001082_RS34945;Dbxref=GenBank:WP_000160383.1;Name=WP_000160383.1;Ontology_term=GO:0006810,GO:0005215,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462300.1;locus_tag=CFSAN001082_RS34945;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_000160383.1;transl_table=11
##sequence-region NZ_APAH01000218.1 1 27193
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000218.1	RefSeq	region	1	27193	.	+	.	ID=NZ_APAH01000218.1:1..27193;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000218.1	RefSeq	gene	90	809	.	-	.	ID=gene-CFSAN001082_RS34950;Name=CFSAN001082_RS34950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34950;old_locus_tag=CFSAN001082_11179
NZ_APAH01000218.1	Protein Homology	CDS	90	809	.	-	0	ID=cds-WP_023254333.1;Parent=gene-CFSAN001082_RS34950;Dbxref=GenBank:WP_023254333.1;Name=WP_023254333.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000586683.1;locus_tag=CFSAN001082_RS34950;product=tetratricopeptide repeat protein;protein_id=WP_023254333.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	814	2925	.	-	.	ID=gene-CFSAN001082_RS34955;Name=CFSAN001082_RS34955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34955;old_locus_tag=CFSAN001082_11184
NZ_APAH01000218.1	Protein Homology	CDS	814	2925	.	-	0	ID=cds-WP_023254334.1;Parent=gene-CFSAN001082_RS34955;Dbxref=GenBank:WP_023254334.1;Name=WP_023254334.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461079.1;locus_tag=CFSAN001082_RS34955;product=DUF4034 domain-containing protein;protein_id=WP_023254334.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	2936	3652	.	-	.	ID=gene-CFSAN001082_RS34960;Name=CFSAN001082_RS34960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34960;old_locus_tag=CFSAN001082_11189
NZ_APAH01000218.1	Protein Homology	CDS	2936	3652	.	-	0	ID=cds-WP_023254335.1;Parent=gene-CFSAN001082_RS34960;Dbxref=GenBank:WP_023254335.1;Name=WP_023254335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461078.1;locus_tag=CFSAN001082_RS34960;product=DUF1266 domain-containing protein;protein_id=WP_023254335.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	3652	4854	.	-	.	ID=gene-CFSAN001082_RS34965;Name=CFSAN001082_RS34965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34965;old_locus_tag=CFSAN001082_11194
NZ_APAH01000218.1	Protein Homology	CDS	3652	4854	.	-	0	ID=cds-WP_023254336.1;Parent=gene-CFSAN001082_RS34965;Dbxref=GenBank:WP_023254336.1;Name=WP_023254336.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000141078.1;locus_tag=CFSAN001082_RS34965;product=PcfJ domain-containing protein;protein_id=WP_023254336.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	5123	5845	.	-	.	ID=gene-CFSAN001082_RS34970;Name=baeR;gbkey=Gene;gene=baeR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34970;old_locus_tag=CFSAN001082_11199
NZ_APAH01000218.1	Protein Homology	CDS	5123	5845	.	-	0	ID=cds-WP_000137854.1;Parent=gene-CFSAN001082_RS34970;Dbxref=GenBank:WP_000137854.1;Name=WP_000137854.1;Ontology_term=GO:0000160,GO:0003677;gbkey=CDS;gene=baeR;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461076.1;locus_tag=CFSAN001082_RS34970;product=two-component system response regulator BaeR;protein_id=WP_000137854.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	5842	7245	.	-	.	ID=gene-CFSAN001082_RS34975;Name=baeS;gbkey=Gene;gene=baeS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34975;old_locus_tag=CFSAN001082_11204
NZ_APAH01000218.1	Protein Homology	CDS	5842	7245	.	-	0	ID=cds-WP_000870081.1;Parent=gene-CFSAN001082_RS34975;Dbxref=GenBank:WP_000870081.1;Name=WP_000870081.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=baeS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461075.1;locus_tag=CFSAN001082_RS34975;product=two-component system sensor histidine kinase BaeS;protein_id=WP_000870081.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	7245	8657	.	-	.	ID=gene-CFSAN001082_RS34980;Name=CFSAN001082_RS34980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34980;old_locus_tag=CFSAN001082_11209
NZ_APAH01000218.1	Protein Homology	CDS	7245	8657	.	-	0	ID=cds-WP_000137818.1;Parent=gene-CFSAN001082_RS34980;Dbxref=GenBank:WP_000137818.1;Name=WP_000137818.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461074.1;locus_tag=CFSAN001082_RS34980;product=MFS transporter;protein_id=WP_000137818.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	8654	11734	.	-	.	ID=gene-CFSAN001082_RS34985;Name=mdtC;gbkey=Gene;gene=mdtC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34985;old_locus_tag=CFSAN001082_11214
NZ_APAH01000218.1	Protein Homology	CDS	8654	11734	.	-	0	ID=cds-WP_017442198.1;Parent=gene-CFSAN001082_RS34985;Dbxref=GenBank:WP_017442198.1;Name=WP_017442198.1;gbkey=CDS;gene=mdtC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461073.1;locus_tag=CFSAN001082_RS34985;product=multidrug efflux RND transporter permease subunit MdtC;protein_id=WP_017442198.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	11735	14857	.	-	.	ID=gene-CFSAN001082_RS34990;Name=mdtB;gbkey=Gene;gene=mdtB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34990;old_locus_tag=CFSAN001082_11219
NZ_APAH01000218.1	Protein Homology	CDS	11735	14857	.	-	0	ID=cds-WP_023254337.1;Parent=gene-CFSAN001082_RS34990;Dbxref=GenBank:WP_023254337.1;Name=WP_023254337.1;gbkey=CDS;gene=mdtB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461072.1;locus_tag=CFSAN001082_RS34990;product=multidrug efflux RND transporter permease subunit MdtB;protein_id=WP_023254337.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	14857	16098	.	-	.	ID=gene-CFSAN001082_RS34995;Name=mdtA;gbkey=Gene;gene=mdtA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS34995;old_locus_tag=CFSAN001082_11224
NZ_APAH01000218.1	Protein Homology	CDS	14857	16098	.	-	0	ID=cds-WP_000678811.1;Parent=gene-CFSAN001082_RS34995;Dbxref=GenBank:WP_000678811.1;Name=WP_000678811.1;gbkey=CDS;gene=mdtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461071.1;locus_tag=CFSAN001082_RS34995;product=multidrug efflux RND transporter subunit MdtA;protein_id=WP_000678811.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	16381	16440	.	+	.	ID=gene-CFSAN001082_RS48280;Name=CFSAN001082_RS48280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48280
NZ_APAH01000218.1	Protein Homology	CDS	16381	16440	.	+	0	ID=cds-WP_105887528.1;Parent=gene-CFSAN001082_RS48280;Dbxref=GenBank:WP_105887528.1;Name=WP_105887528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791247.1;locus_tag=CFSAN001082_RS48280;product=type I toxin-antitoxin system Ibs family toxin;protein_id=WP_105887528.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	16539	17891	.	-	.	ID=gene-CFSAN001082_RS35000;Name=yegD;gbkey=Gene;gene=yegD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35000;old_locus_tag=CFSAN001082_11229
NZ_APAH01000218.1	Protein Homology	CDS	16539	17891	.	-	0	ID=cds-WP_023254338.1;Parent=gene-CFSAN001082_RS35000;Dbxref=GenBank:WP_023254338.1;Name=WP_023254338.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;gene=yegD;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461070.1;locus_tag=CFSAN001082_RS35000;product=molecular chaperone;protein_id=WP_023254338.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	18025	18894	.	+	.	ID=gene-CFSAN001082_RS35005;Name=alkA;gbkey=Gene;gene=alkA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35005;old_locus_tag=CFSAN001082_11234
NZ_APAH01000218.1	Protein Homology	CDS	18025	18894	.	+	0	ID=cds-WP_023254339.1;Parent=gene-CFSAN001082_RS35005;Dbxref=GenBank:WP_023254339.1;Name=WP_023254339.1;Ontology_term=GO:0006281,GO:0003824;gbkey=CDS;gene=alkA;go_function=catalytic activity|0003824||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461069.1;locus_tag=CFSAN001082_RS35005;product=DNA-3-methyladenine glycosylase 2;protein_id=WP_023254339.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	18862	21852	.	-	.	ID=gene-CFSAN001082_RS35010;Name=CFSAN001082_RS35010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35010;old_locus_tag=CFSAN001082_11239
NZ_APAH01000218.1	Protein Homology	CDS	18862	21852	.	-	0	ID=cds-WP_023254340.1;Parent=gene-CFSAN001082_RS35010;Dbxref=GenBank:WP_023254340.1;Name=WP_023254340.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461068.1;locus_tag=CFSAN001082_RS35010;product=MASE1 domain-containing protein;protein_id=WP_023254340.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	22182	22823	.	+	.	ID=gene-CFSAN001082_RS35015;Name=udk;gbkey=Gene;gene=udk;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35015;old_locus_tag=CFSAN001082_11244
NZ_APAH01000218.1	Protein Homology	CDS	22182	22823	.	+	0	ID=cds-WP_000132082.1;Parent=gene-CFSAN001082_RS35015;Dbxref=GenBank:WP_000132082.1;Name=WP_000132082.1;Ontology_term=GO:0004849;gbkey=CDS;gene=udk;go_function=uridine kinase activity|0004849||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461067.1;locus_tag=CFSAN001082_RS35015;product=uridine kinase;protein_id=WP_000132082.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	22914	23495	.	+	.	ID=gene-CFSAN001082_RS35020;Name=dcd;gbkey=Gene;gene=dcd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35020;old_locus_tag=CFSAN001082_11249
NZ_APAH01000218.1	Protein Homology	CDS	22914	23495	.	+	0	ID=cds-WP_001234783.1;Parent=gene-CFSAN001082_RS35020;Dbxref=GenBank:WP_001234783.1;Name=WP_001234783.1;Ontology_term=GO:0006229,GO:0008829;gbkey=CDS;gene=dcd;go_function=dCTP deaminase activity|0008829||IEA;go_process=dUTP biosynthetic process|0006229||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004942378.1;locus_tag=CFSAN001082_RS35020;product=dCTP deaminase;protein_id=WP_001234783.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	23534	25390	.	+	.	ID=gene-CFSAN001082_RS35025;Name=asmA;gbkey=Gene;gene=asmA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35025;old_locus_tag=CFSAN001082_11254
NZ_APAH01000218.1	Protein Homology	CDS	23534	25390	.	+	0	ID=cds-WP_023216954.1;Parent=gene-CFSAN001082_RS35025;Dbxref=GenBank:WP_023216954.1;Name=WP_023216954.1;gbkey=CDS;gene=asmA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461065.1;locus_tag=CFSAN001082_RS35025;product=outer membrane assembly protein AsmA;protein_id=WP_023216954.1;transl_table=11
NZ_APAH01000218.1	RefSeq	gene	25476	27056	.	-	.	ID=gene-CFSAN001082_RS35030;Name=CFSAN001082_RS35030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35030;old_locus_tag=CFSAN001082_11259
NZ_APAH01000218.1	Protein Homology	CDS	25476	27056	.	-	0	ID=cds-WP_000454713.1;Parent=gene-CFSAN001082_RS35030;Dbxref=GenBank:WP_000454713.1;Name=WP_000454713.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461064.1;locus_tag=CFSAN001082_RS35030;product=TerC family protein;protein_id=WP_000454713.1;transl_table=11
##sequence-region NZ_APAH01000219.1 1 778
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000219.1	RefSeq	region	1	778	.	+	.	ID=NZ_APAH01000219.1:1..778;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000219.1	RefSeq	pseudogene	1	624	.	-	.	ID=gene-CFSAN001082_RS35035;Name=CFSAN001082_RS35035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS35035;old_locus_tag=CFSAN001082_11264;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000219.1	Protein Homology	CDS	1	624	.	-	0	ID=cds-CFSAN001082_RS35035;Parent=gene-CFSAN001082_RS35035;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460209.1;locus_tag=CFSAN001082_RS35035;partial=true;product=DUF3626 domain-containing protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000220.1 1 438
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000220.1	RefSeq	region	1	438	.	+	.	ID=NZ_APAH01000220.1:1..438;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000220.1	RefSeq	pseudogene	1	137	.	+	.	ID=gene-CFSAN001082_RS48285;Name=CFSAN001082_RS48285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48285;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000220.1	Protein Homology	CDS	1	137	.	+	2	ID=cds-CFSAN001082_RS48285;Parent=gene-CFSAN001082_RS48285;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460209.1;locus_tag=CFSAN001082_RS48285;partial=true;product=DUF3626 domain-containing protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000221.1 1 326
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000221.1	RefSeq	region	1	326	.	+	.	ID=NZ_APAH01000221.1:1..326;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000221.1	RefSeq	gene	1	326	.	-	.	ID=gene-CFSAN001082_RS47040;Name=CFSAN001082_RS47040;end_range=326,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47040;old_locus_tag=CFSAN001082_11269;partial=true;start_range=.,1
NZ_APAH01000221.1	Protein Homology	CDS	1	326	.	-	1	ID=cds-WP_023254342.1;Parent=gene-CFSAN001082_RS47040;Dbxref=GenBank:WP_023254342.1;Name=WP_023254342.1;end_range=326,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835222.1;locus_tag=CFSAN001082_RS47040;partial=true;product=DUF4765 family protein;protein_id=WP_023254342.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000222.1 1 17277
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000222.1	RefSeq	region	1	17277	.	+	.	ID=NZ_APAH01000222.1:1..17277;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000222.1	RefSeq	pseudogene	1	484	.	+	.	ID=gene-CFSAN001082_RS35040;Name=siiD;gbkey=Gene;gene=siiD;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS35040;old_locus_tag=CFSAN001082_11274;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000222.1	Protein Homology	CDS	1	484	.	+	1	ID=cds-CFSAN001082_RS35040;Parent=gene-CFSAN001082_RS35040;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;gene=siiD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463125.1;locus_tag=CFSAN001082_RS35040;partial=true;product=SPI-4 type I secretion system protein SiiD;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000222.1	RefSeq	gene	501	17183	.	+	.	ID=gene-CFSAN001082_RS35045;Name=siiE;gbkey=Gene;gene=siiE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35045;old_locus_tag=CFSAN001082_11279
NZ_APAH01000222.1	Protein Homology	CDS	501	17183	.	+	0	ID=cds-WP_023254344.1;Parent=gene-CFSAN001082_RS35045;Dbxref=GenBank:WP_023254344.1;Name=WP_023254344.1;gbkey=CDS;gene=siiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463126.1;locus_tag=CFSAN001082_RS35045;product=non-fimbrial adhesin SiiE;protein_id=WP_023254344.1;transl_table=11
##sequence-region NZ_APAH01000223.1 1 8328
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000223.1	RefSeq	region	1	8328	.	+	.	ID=NZ_APAH01000223.1:1..8328;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000223.1	RefSeq	gene	184	789	.	+	.	ID=gene-CFSAN001082_RS35050;Name=pmrG;gbkey=Gene;gene=pmrG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35050;old_locus_tag=CFSAN001082_11284
NZ_APAH01000223.1	Protein Homology	CDS	184	789	.	+	0	ID=cds-WP_020899038.1;Parent=gene-CFSAN001082_RS35050;Dbxref=GenBank:WP_020899038.1;Name=WP_020899038.1;gbkey=CDS;gene=pmrG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461238.1;locus_tag=CFSAN001082_RS35050;product=lipopolysaccharide core heptose(II)-phosphate phosphatase PmrG;protein_id=WP_020899038.1;transl_table=11
NZ_APAH01000223.1	RefSeq	gene	834	1259	.	-	.	ID=gene-CFSAN001082_RS35055;Name=nudI;gbkey=Gene;gene=nudI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35055;old_locus_tag=CFSAN001082_11289
NZ_APAH01000223.1	Protein Homology	CDS	834	1259	.	-	0	ID=cds-WP_001249905.1;Parent=gene-CFSAN001082_RS35055;Dbxref=GenBank:WP_001249905.1;Name=WP_001249905.1;Ontology_term=GO:0016818;gbkey=CDS;gene=nudI;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461237.1;locus_tag=CFSAN001082_RS35055;product=nucleoside triphosphatase NudI;protein_id=WP_001249905.1;transl_table=11
NZ_APAH01000223.1	RefSeq	gene	1538	2080	.	+	.	ID=gene-CFSAN001082_RS35060;Name=CFSAN001082_RS35060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35060;old_locus_tag=CFSAN001082_11294
NZ_APAH01000223.1	Protein Homology	CDS	1538	2080	.	+	0	ID=cds-WP_001670658.1;Parent=gene-CFSAN001082_RS35060;Dbxref=GenBank:WP_001670658.1;Name=WP_001670658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311165.2;locus_tag=CFSAN001082_RS35060;product=YfaZ family protein;protein_id=WP_001670658.1;transl_table=11
NZ_APAH01000223.1	RefSeq	gene	2195	3391	.	+	.	ID=gene-CFSAN001082_RS35065;Name=CFSAN001082_RS35065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35065;old_locus_tag=CFSAN001082_11299
NZ_APAH01000223.1	Protein Homology	CDS	2195	3391	.	+	0	ID=cds-WP_000935683.1;Parent=gene-CFSAN001082_RS35065;Dbxref=GenBank:WP_000935683.1;Name=WP_000935683.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461235.1;locus_tag=CFSAN001082_RS35065;product=nicotinamide mononucleotide deamidase-related protein YfaY;protein_id=WP_000935683.1;transl_table=11
NZ_APAH01000223.1	RefSeq	gene	3641	4423	.	+	.	ID=gene-CFSAN001082_RS35070;Name=CFSAN001082_RS35070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35070;old_locus_tag=CFSAN001082_11304
NZ_APAH01000223.1	Protein Homology	CDS	3641	4423	.	+	0	ID=cds-WP_000894173.1;Parent=gene-CFSAN001082_RS35070;Dbxref=GenBank:WP_000894173.1;Name=WP_000894173.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461234.1;locus_tag=CFSAN001082_RS35070;product=IclR family transcriptional regulator;protein_id=WP_000894173.1;transl_table=11
NZ_APAH01000223.1	RefSeq	gene	4437	5642	.	+	.	ID=gene-CFSAN001082_RS35075;Name=rhmD;gbkey=Gene;gene=rhmD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35075;old_locus_tag=CFSAN001082_11309
NZ_APAH01000223.1	Protein Homology	CDS	4437	5642	.	+	0	ID=cds-WP_001530644.1;Parent=gene-CFSAN001082_RS35075;Dbxref=GenBank:WP_001530644.1;Name=WP_001530644.1;Ontology_term=GO:0050032;gbkey=CDS;gene=rhmD;go_function=L-rhamnonate dehydratase activity|0050032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416750.2;locus_tag=CFSAN001082_RS35075;product=L-rhamnonate dehydratase;protein_id=WP_001530644.1;transl_table=11
NZ_APAH01000223.1	RefSeq	gene	5698	6987	.	+	.	ID=gene-CFSAN001082_RS35080;Name=CFSAN001082_RS35080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35080;old_locus_tag=CFSAN001082_11314
NZ_APAH01000223.1	Protein Homology	CDS	5698	6987	.	+	0	ID=cds-WP_000028931.1;Parent=gene-CFSAN001082_RS35080;Dbxref=GenBank:WP_000028931.1;Name=WP_000028931.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461232.1;locus_tag=CFSAN001082_RS35080;product=MFS transporter;protein_id=WP_000028931.1;transl_table=11
NZ_APAH01000223.1	RefSeq	gene	7013	7816	.	+	.	ID=gene-CFSAN001082_RS35085;Name=yfaU;gbkey=Gene;gene=yfaU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35085;old_locus_tag=CFSAN001082_11319
NZ_APAH01000223.1	Protein Homology	CDS	7013	7816	.	+	0	ID=cds-WP_000992941.1;Parent=gene-CFSAN001082_RS35085;Dbxref=GenBank:WP_000992941.1;Name=WP_000992941.1;gbkey=CDS;gene=yfaU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461231.1;locus_tag=CFSAN001082_RS35085;product=2-keto-3-deoxy-L-rhamnonate aldolase;protein_id=WP_000992941.1;transl_table=11
NZ_APAH01000223.1	RefSeq	gene	7822	7998	.	+	.	ID=gene-CFSAN001082_RS47860;Name=CFSAN001082_RS47860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47860;old_locus_tag=CFSAN001082_11324
NZ_APAH01000223.1	Protein Homology	CDS	7822	7998	.	+	0	ID=cds-WP_001112766.1;Parent=gene-CFSAN001082_RS47860;Dbxref=GenBank:WP_001112766.1;Name=WP_001112766.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461230.1;locus_tag=CFSAN001082_RS47860;product=hypothetical protein;protein_id=WP_001112766.1;transl_table=11
NZ_APAH01000223.1	RefSeq	pseudogene	8096	8328	.	-	.	ID=gene-CFSAN001082_RS47045;Name=CFSAN001082_RS47045;end_range=8328,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47045;partial=true;pseudo=true
NZ_APAH01000223.1	Protein Homology	CDS	8096	8328	.	-	2	ID=cds-CFSAN001082_RS47045;Parent=gene-CFSAN001082_RS47045;Note=similar to ElaD%3B specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins%3B SseL in Salmonella is required for macrophage killing and virulence%2C and it is secreted by the salmonella pathogenicity island 2 type III secretion system%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=8328,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014343870.1;locus_tag=CFSAN001082_RS47045;partial=true;product=type III secretion system effector deubiquitinase SseL;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000224.1 1 18933
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000224.1	RefSeq	region	1	18933	.	+	.	ID=NZ_APAH01000224.1:1..18933;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000224.1	RefSeq	gene	74	568	.	+	.	ID=gene-CFSAN001082_RS35090;Name=eco;gbkey=Gene;gene=eco;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35090;old_locus_tag=CFSAN001082_11329
NZ_APAH01000224.1	Protein Homology	CDS	74	568	.	+	0	ID=cds-WP_023195460.1;Parent=gene-CFSAN001082_RS35090;Dbxref=GenBank:WP_023195460.1;Name=WP_023195460.1;Ontology_term=GO:0004867;gbkey=CDS;gene=eco;go_function=serine-type endopeptidase inhibitor activity|0004867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461205.1;locus_tag=CFSAN001082_RS35090;product=serine protease inhibitor ecotin;protein_id=WP_023195460.1;transl_table=11
NZ_APAH01000224.1	RefSeq	gene	777	2420	.	-	.	ID=gene-CFSAN001082_RS35095;Name=CFSAN001082_RS35095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35095;old_locus_tag=CFSAN001082_11334
NZ_APAH01000224.1	Protein Homology	CDS	777	2420	.	-	0	ID=cds-WP_000421584.1;Parent=gene-CFSAN001082_RS35095;Dbxref=GenBank:WP_000421584.1;Name=WP_000421584.1;Ontology_term=GO:0015833,GO:0140359,GO:1904680;gbkey=CDS;go_function=ABC-type transporter activity|0140359||IEA,peptide transmembrane transporter activity|1904680||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461206.1;locus_tag=CFSAN001082_RS35095;product=multidrug ABC transporter permease/ATP-binding protein;protein_id=WP_000421584.1;transl_table=11
NZ_APAH01000224.1	RefSeq	gene	2496	3146	.	-	.	ID=gene-CFSAN001082_RS35100;Name=alkB;gbkey=Gene;gene=alkB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35100;old_locus_tag=CFSAN001082_11339
NZ_APAH01000224.1	Protein Homology	CDS	2496	3146	.	-	0	ID=cds-WP_023205622.1;Parent=gene-CFSAN001082_RS35100;Dbxref=GenBank:WP_023205622.1;Name=WP_023205622.1;gbkey=CDS;gene=alkB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461207.1;locus_tag=CFSAN001082_RS35100;product=DNA oxidative demethylase AlkB;protein_id=WP_023205622.1;transl_table=11
NZ_APAH01000224.1	RefSeq	gene	3149	4210	.	-	.	ID=gene-CFSAN001082_RS35105;Name=ada;gbkey=Gene;gene=ada;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35105;old_locus_tag=CFSAN001082_11344
NZ_APAH01000224.1	Protein Homology	CDS	3149	4210	.	-	0	ID=cds-WP_031612822.1;Parent=gene-CFSAN001082_RS35105;Dbxref=GenBank:WP_031612822.1;Name=WP_031612822.1;Ontology_term=GO:0006281,GO:0006355,GO:0003700;gbkey=CDS;gene=ada;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=DNA repair|0006281||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461208.1;locus_tag=CFSAN001082_RS35105;product=bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada;protein_id=WP_031612822.1;transl_table=11
NZ_APAH01000224.1	RefSeq	gene	4291	5343	.	-	.	ID=gene-CFSAN001082_RS35110;Name=apbE;gbkey=Gene;gene=apbE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35110;old_locus_tag=CFSAN001082_11349
NZ_APAH01000224.1	Protein Homology	CDS	4291	5343	.	-	0	ID=cds-WP_023193383.1;Parent=gene-CFSAN001082_RS35110;Dbxref=GenBank:WP_023193383.1;Name=WP_023193383.1;Ontology_term=GO:0017013;gbkey=CDS;gene=apbE;go_process=protein flavinylation|0017013||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461209.1;locus_tag=CFSAN001082_RS35110;product=FAD:protein FMN transferase ApbE;protein_id=WP_023193383.1;transl_table=11
NZ_APAH01000224.1	RefSeq	gene	5458	6594	.	-	.	ID=gene-CFSAN001082_RS35115;Name=CFSAN001082_RS35115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35115;old_locus_tag=CFSAN001082_11354
NZ_APAH01000224.1	Protein Homology	CDS	5458	6594	.	-	0	ID=cds-WP_023138041.1;Parent=gene-CFSAN001082_RS35115;Dbxref=GenBank:WP_023138041.1;Name=WP_023138041.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461210.1;locus_tag=CFSAN001082_RS35115;product=porin OmpC;protein_id=WP_023138041.1;transl_table=11
NZ_APAH01000224.1	RefSeq	gene	7323	9992	.	+	.	ID=gene-CFSAN001082_RS35125;Name=rcsD;gbkey=Gene;gene=rcsD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35125;old_locus_tag=CFSAN001082_11364
NZ_APAH01000224.1	Protein Homology	CDS	7323	9992	.	+	0	ID=cds-WP_000083201.1;Parent=gene-CFSAN001082_RS35125;Dbxref=GenBank:WP_000083201.1;Name=WP_000083201.1;Ontology_term=GO:0000160,GO:0009927,GO:0005886;gbkey=CDS;gene=rcsD;go_component=plasma membrane|0005886||IEA;go_function=histidine phosphotransfer kinase activity|0009927||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461211.1;locus_tag=CFSAN001082_RS35125;product=phosphotransferase RcsD;protein_id=WP_000083201.1;transl_table=11
NZ_APAH01000224.1	RefSeq	gene	10009	10659	.	+	.	ID=gene-CFSAN001082_RS35130;Name=rcsB;gbkey=Gene;gene=rcsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35130;old_locus_tag=CFSAN001082_11369
NZ_APAH01000224.1	Protein Homology	CDS	10009	10659	.	+	0	ID=cds-WP_001061919.1;Parent=gene-CFSAN001082_RS35130;Dbxref=GenBank:WP_001061919.1;Name=WP_001061919.1;gbkey=CDS;gene=rcsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461212.1;locus_tag=CFSAN001082_RS35130;product=response regulator transcription factor RcsB;protein_id=WP_001061919.1;transl_table=11
NZ_APAH01000224.1	RefSeq	gene	10762	13608	.	-	.	ID=gene-CFSAN001082_RS35135;Name=rcsC;gbkey=Gene;gene=rcsC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35135;old_locus_tag=CFSAN001082_11374
NZ_APAH01000224.1	Protein Homology	CDS	10762	13608	.	-	0	ID=cds-WP_023254347.1;Parent=gene-CFSAN001082_RS35135;Dbxref=GenBank:WP_023254347.1;Name=WP_023254347.1;Ontology_term=GO:0000160,GO:0006355,GO:0018106,GO:0000155,GO:0005524,GO:0016020;gbkey=CDS;gene=rcsC;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,peptidyl-histidine phosphorylation|0018106||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461213.1;locus_tag=CFSAN001082_RS35135;product=two-component system sensor histidine kinase RcsC;protein_id=WP_023254347.1;transl_table=11
NZ_APAH01000224.1	RefSeq	gene	13726	16362	.	-	.	ID=gene-CFSAN001082_RS35140;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35140;old_locus_tag=CFSAN001082_11379
NZ_APAH01000224.1	Protein Homology	CDS	13726	16362	.	-	0	ID=cds-WP_001281271.1;Parent=gene-CFSAN001082_RS35140;Dbxref=GenBank:WP_001281271.1;Name=WP_001281271.1;Ontology_term=GO:0006265,GO:0003916,GO:0003918,GO:0009330;gbkey=CDS;gene=gyrA;go_component=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) complex|0009330||IEA;go_function=DNA topoisomerase activity|0003916||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461214.1;locus_tag=CFSAN001082_RS35140;product=DNA topoisomerase (ATP-hydrolyzing) subunit A;protein_id=WP_001281271.1;transl_table=11
NZ_APAH01000224.1	RefSeq	gene	16772	17974	.	-	.	ID=gene-CFSAN001082_RS35145;Name=CFSAN001082_RS35145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35145;old_locus_tag=CFSAN001082_11389
NZ_APAH01000224.1	Protein Homology	CDS	16772	17974	.	-	0	ID=cds-WP_023254349.1;Parent=gene-CFSAN001082_RS35145;Dbxref=GenBank:WP_023254349.1;Name=WP_023254349.1;Ontology_term=GO:0000287,GO:0003824;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461215.1;locus_tag=CFSAN001082_RS35145;product=mandelate racemase/muconate lactonizing enzyme family protein;protein_id=WP_023254349.1;transl_table=11
NZ_APAH01000224.1	RefSeq	gene	17989	18933	.	-	.	ID=gene-CFSAN001082_RS35150;Name=CFSAN001082_RS35150;end_range=18933,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35150;old_locus_tag=CFSAN001082_11394;partial=true
NZ_APAH01000224.1	Protein Homology	CDS	17989	18933	.	-	0	ID=cds-WP_023254350.1;Parent=gene-CFSAN001082_RS35150;Dbxref=GenBank:WP_023254350.1;Name=WP_023254350.1;Ontology_term=GO:0055085,GO:0022857;end_range=18933,.;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461216.1;locus_tag=CFSAN001082_RS35150;partial=true;product=MFS transporter;protein_id=WP_023254350.1;transl_table=11
##sequence-region NZ_APAH01000225.1 1 5554
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000225.1	RefSeq	region	1	5554	.	+	.	ID=NZ_APAH01000225.1:1..5554;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000225.1	RefSeq	gene	379	1050	.	+	.	ID=gene-CFSAN001082_RS35155;Name=CFSAN001082_RS35155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35155;old_locus_tag=CFSAN001082_11399
NZ_APAH01000225.1	Protein Homology	CDS	379	1050	.	+	0	ID=cds-WP_000068752.1;Parent=gene-CFSAN001082_RS35155;Dbxref=GenBank:WP_000068752.1;Name=WP_000068752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418750.2;locus_tag=CFSAN001082_RS35155;product=nucleoside recognition domain-containing protein;protein_id=WP_000068752.1;transl_table=11
NZ_APAH01000225.1	RefSeq	gene	1047	1508	.	+	.	ID=gene-CFSAN001082_RS35160;Name=CFSAN001082_RS35160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35160;old_locus_tag=CFSAN001082_11404
NZ_APAH01000225.1	Protein Homology	CDS	1047	1508	.	+	0	ID=cds-WP_000211979.1;Parent=gene-CFSAN001082_RS35160;Dbxref=GenBank:WP_000211979.1;Name=WP_000211979.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463372.1;locus_tag=CFSAN001082_RS35160;product=YjiG family protein;protein_id=WP_000211979.1;transl_table=11
NZ_APAH01000225.1	RefSeq	gene	1521	2693	.	+	.	ID=gene-CFSAN001082_RS35165;Name=iadA;gbkey=Gene;gene=iadA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35165;old_locus_tag=CFSAN001082_11409
NZ_APAH01000225.1	Protein Homology	CDS	1521	2693	.	+	0	ID=cds-WP_001113057.1;Parent=gene-CFSAN001082_RS35165;Dbxref=GenBank:WP_001113057.1;Name=WP_001113057.1;Ontology_term=GO:0008798;gbkey=CDS;gene=iadA;go_function=beta-aspartyl-peptidase activity|0008798||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463371.1;locus_tag=CFSAN001082_RS35165;product=beta-aspartyl-peptidase;protein_id=WP_001113057.1;transl_table=11
NZ_APAH01000225.1	RefSeq	gene	2812	3720	.	+	.	ID=gene-CFSAN001082_RS35170;Name=hypT;gbkey=Gene;gene=hypT;gene_biotype=protein_coding;gene_synonym=qseD;locus_tag=CFSAN001082_RS35170;old_locus_tag=CFSAN001082_11414
NZ_APAH01000225.1	Protein Homology	CDS	2812	3720	.	+	0	ID=cds-WP_000383509.1;Parent=gene-CFSAN001082_RS35170;Dbxref=GenBank:WP_000383509.1;Name=WP_000383509.1;gbkey=CDS;gene=hypT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463370.1;locus_tag=CFSAN001082_RS35170;product=hypochlorite stress DNA-binding transcriptional regulator HypT;protein_id=WP_000383509.1;transl_table=11
NZ_APAH01000225.1	RefSeq	gene	3726	4460	.	-	.	ID=gene-CFSAN001082_RS35175;Name=CFSAN001082_RS35175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35175;old_locus_tag=CFSAN001082_11419
NZ_APAH01000225.1	Protein Homology	CDS	3726	4460	.	-	0	ID=cds-WP_000683247.1;Parent=gene-CFSAN001082_RS35175;Dbxref=GenBank:WP_000683247.1;Name=WP_000683247.1;Ontology_term=GO:0047661;gbkey=CDS;go_function=amino-acid racemase activity|0047661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463369.1;locus_tag=CFSAN001082_RS35175;product=aspartate/glutamate racemase family protein;protein_id=WP_000683247.1;transl_table=11
NZ_APAH01000225.1	RefSeq	gene	4699	5229	.	-	.	ID=gene-CFSAN001082_RS35180;Name=CFSAN001082_RS35180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35180;old_locus_tag=CFSAN001082_11424
NZ_APAH01000225.1	Protein Homology	CDS	4699	5229	.	-	0	ID=cds-WP_000907671.1;Parent=gene-CFSAN001082_RS35180;Dbxref=GenBank:WP_000907671.1;Name=WP_000907671.1;Ontology_term=GO:0033103;gbkey=CDS;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463368.3;locus_tag=CFSAN001082_RS35180;product=Hcp family type VI secretion system effector;protein_id=WP_000907671.1;transl_table=11
##sequence-region NZ_APAH01000226.1 1 11786
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000226.1	RefSeq	region	1	11786	.	+	.	ID=NZ_APAH01000226.1:1..11786;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000226.1	RefSeq	gene	37	1581	.	-	.	ID=gene-CFSAN001082_RS35185;Name=cadC;gbkey=Gene;gene=cadC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35185;old_locus_tag=CFSAN001082_11429
NZ_APAH01000226.1	Protein Homology	CDS	37	1581	.	-	0	ID=cds-WP_023254351.1;Parent=gene-CFSAN001082_RS35185;Dbxref=GenBank:WP_023254351.1;Name=WP_023254351.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=cadC;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461492.1;locus_tag=CFSAN001082_RS35185;product=lysine decarboxylation/transport transcriptional activator CadC;protein_id=WP_023254351.1;transl_table=11
NZ_APAH01000226.1	RefSeq	gene	1763	2953	.	-	.	ID=gene-CFSAN001082_RS35190;Name=hmpA;gbkey=Gene;gene=hmpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35190;old_locus_tag=CFSAN001082_11434
NZ_APAH01000226.1	Protein Homology	CDS	1763	2953	.	-	0	ID=cds-WP_000883152.1;Parent=gene-CFSAN001082_RS35190;Dbxref=GenBank:WP_000883152.1;Name=WP_000883152.1;Ontology_term=GO:0051409,GO:0008941,GO:0019825,GO:0020037,GO:0071949;gbkey=CDS;gene=hmpA;go_function=nitric oxide dioxygenase NAD(P)H activity|0008941||IEA,oxygen binding|0019825||IEA,heme binding|0020037||IEA,FAD binding|0071949||IEA;go_process=response to nitrosative stress|0051409||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461491.1;locus_tag=CFSAN001082_RS35190;product=NO-inducible flavohemoprotein;protein_id=WP_000883152.1;transl_table=11
NZ_APAH01000226.1	RefSeq	gene	3278	4531	.	+	.	ID=gene-CFSAN001082_RS35195;Name=glyA;gbkey=Gene;gene=glyA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35195;old_locus_tag=CFSAN001082_11444
NZ_APAH01000226.1	Protein Homology	CDS	3278	4531	.	+	0	ID=cds-WP_000919178.1;Parent=gene-CFSAN001082_RS35195;Dbxref=GenBank:WP_000919178.1;Name=WP_000919178.1;Ontology_term=GO:0019264,GO:0004372,GO:0008270,GO:0030170,GO:0070905;gbkey=CDS;gene=glyA;go_function=glycine hydroxymethyltransferase activity|0004372||IEA,zinc ion binding|0008270||IEA,pyridoxal phosphate binding|0030170||IEA,serine binding|0070905||IEA;go_process=glycine biosynthetic process from serine|0019264||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019077397.1;locus_tag=CFSAN001082_RS35195;product=serine hydroxymethyltransferase;protein_id=WP_000919178.1;transl_table=11
NZ_APAH01000226.1	RefSeq	gene	4727	5866	.	+	.	ID=gene-CFSAN001082_RS35200;Name=CFSAN001082_RS35200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35200;old_locus_tag=CFSAN001082_11449
NZ_APAH01000226.1	Protein Homology	CDS	4727	5866	.	+	0	ID=cds-WP_023254352.1;Parent=gene-CFSAN001082_RS35200;Dbxref=GenBank:WP_023254352.1;Name=WP_023254352.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461489.1;locus_tag=CFSAN001082_RS35200;product=3-phenylpropionate MFS transporter;protein_id=WP_023254352.1;transl_table=11
NZ_APAH01000226.1	RefSeq	gene	5861	7138	.	-	.	ID=gene-CFSAN001082_RS35205;Name=csiE;gbkey=Gene;gene=csiE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35205;old_locus_tag=CFSAN001082_11454
NZ_APAH01000226.1	Protein Homology	CDS	5861	7138	.	-	0	ID=cds-WP_000982961.1;Parent=gene-CFSAN001082_RS35205;Dbxref=GenBank:WP_000982961.1;Name=WP_000982961.1;gbkey=CDS;gene=csiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461488.1;locus_tag=CFSAN001082_RS35205;product=stationary phase inducible protein CsiE;protein_id=WP_000982961.1;transl_table=11
NZ_APAH01000226.1	RefSeq	gene	7264	7902	.	+	.	ID=gene-CFSAN001082_RS35210;Name=CFSAN001082_RS35210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35210;old_locus_tag=CFSAN001082_11459
NZ_APAH01000226.1	Protein Homology	CDS	7264	7902	.	+	0	ID=cds-WP_023254353.1;Parent=gene-CFSAN001082_RS35210;Dbxref=GenBank:WP_023254353.1;Name=WP_023254353.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461487.1;locus_tag=CFSAN001082_RS35210;product=DUF1007 family protein;protein_id=WP_023254353.1;transl_table=11
NZ_APAH01000226.1	RefSeq	gene	7893	8879	.	+	.	ID=gene-CFSAN001082_RS35215;Name=CFSAN001082_RS35215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35215;old_locus_tag=CFSAN001082_11464
NZ_APAH01000226.1	Protein Homology	CDS	7893	8879	.	+	0	ID=cds-WP_020839162.1;Parent=gene-CFSAN001082_RS35215;Dbxref=GenBank:WP_020839162.1;Name=WP_020839162.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461486.1;locus_tag=CFSAN001082_RS35215;product=nickel/cobalt transporter;protein_id=WP_020839162.1;transl_table=11
NZ_APAH01000226.1	RefSeq	gene	8880	9893	.	-	.	ID=gene-CFSAN001082_RS35220;Name=asrC;gbkey=Gene;gene=asrC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35220;old_locus_tag=CFSAN001082_11469
NZ_APAH01000226.1	Protein Homology	CDS	8880	9893	.	-	0	ID=cds-WP_000020685.1;Parent=gene-CFSAN001082_RS35220;Dbxref=GenBank:WP_000020685.1;Name=WP_000020685.1;Ontology_term=GO:0006790,GO:0016002;gbkey=CDS;gene=asrC;go_function=sulfite reductase activity|0016002||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461485.1;locus_tag=CFSAN001082_RS35220;product=sulfite reductase subunit C;protein_id=WP_000020685.1;transl_table=11
NZ_APAH01000226.1	RefSeq	gene	9904	10722	.	-	.	ID=gene-CFSAN001082_RS35225;Name=asrB;gbkey=Gene;gene=asrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35225;old_locus_tag=CFSAN001082_11474
NZ_APAH01000226.1	Protein Homology	CDS	9904	10722	.	-	0	ID=cds-WP_000017587.1;Parent=gene-CFSAN001082_RS35225;Dbxref=GenBank:WP_000017587.1;Name=WP_000017587.1;Ontology_term=GO:0006790,GO:0009055,GO:0016002;gbkey=CDS;gene=asrB;go_function=electron transfer activity|0009055||IEA,sulfite reductase activity|0016002||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461484.1;locus_tag=CFSAN001082_RS35225;product=anaerobic sulfite reductase subunit AsrB;protein_id=WP_000017587.1;transl_table=11
NZ_APAH01000226.1	RefSeq	gene	10726	11769	.	-	.	ID=gene-CFSAN001082_RS35230;Name=asrA;gbkey=Gene;gene=asrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35230;old_locus_tag=CFSAN001082_11479
NZ_APAH01000226.1	Protein Homology	CDS	10726	11769	.	-	0	ID=cds-WP_000985204.1;Parent=gene-CFSAN001082_RS35230;Dbxref=GenBank:WP_000985204.1;Name=WP_000985204.1;Ontology_term=GO:0006790,GO:0009055,GO:0016002;gbkey=CDS;gene=asrA;go_function=electron transfer activity|0009055||IEA,sulfite reductase activity|0016002||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461483.1;locus_tag=CFSAN001082_RS35230;product=anaerobic sulfite reductase subunit AsrA;protein_id=WP_000985204.1;transl_table=11
##sequence-region NZ_APAH01000227.1 1 396
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000227.1	RefSeq	region	1	396	.	+	.	ID=NZ_APAH01000227.1:1..396;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000227.1	RefSeq	pseudogene	1	396	.	-	.	ID=gene-CFSAN001082_RS35235;Name=CFSAN001082_RS35235;end_range=396,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS35235;old_locus_tag=CFSAN001082_11484;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000227.1	Protein Homology	CDS	1	396	.	-	1	ID=cds-CFSAN001082_RS35235;Parent=gene-CFSAN001082_RS35235;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=396,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000400600.1;locus_tag=CFSAN001082_RS35235;partial=true;product=non-LEE encoded effector protein NleB;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000228.1 1 17792
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000228.1	RefSeq	region	1	17792	.	+	.	ID=NZ_APAH01000228.1:1..17792;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000228.1	RefSeq	gene	147	1535	.	+	.	ID=gene-CFSAN001082_RS35240;Name=CFSAN001082_RS35240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35240;old_locus_tag=CFSAN001082_11489
NZ_APAH01000228.1	Protein Homology	CDS	147	1535	.	+	0	ID=cds-WP_000198250.1;Parent=gene-CFSAN001082_RS35240;Dbxref=GenBank:WP_000198250.1;Name=WP_000198250.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460535.1;locus_tag=CFSAN001082_RS35240;product=NarK family nitrate/nitrite MFS transporter;protein_id=WP_000198250.1;transl_table=11
NZ_APAH01000228.1	RefSeq	gene	1627	5367	.	+	.	ID=gene-CFSAN001082_RS35245;Name=CFSAN001082_RS35245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35245;old_locus_tag=CFSAN001082_11494
NZ_APAH01000228.1	Protein Homology	CDS	1627	5367	.	+	0	ID=cds-WP_023254356.1;Parent=gene-CFSAN001082_RS35245;Dbxref=GenBank:WP_023254356.1;Name=WP_023254356.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460536.1;locus_tag=CFSAN001082_RS35245;product=nitrate reductase subunit alpha;protein_id=WP_023254356.1;transl_table=11
NZ_APAH01000228.1	RefSeq	gene	5364	6908	.	+	.	ID=gene-CFSAN001082_RS35250;Name=narH;gbkey=Gene;gene=narH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35250;old_locus_tag=CFSAN001082_11499
NZ_APAH01000228.1	Protein Homology	CDS	5364	6908	.	+	0	ID=cds-WP_023254357.1;Parent=gene-CFSAN001082_RS35250;Dbxref=GenBank:WP_023254357.1;Name=WP_023254357.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;gene=narH;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460537.1;locus_tag=CFSAN001082_RS35250;product=nitrate reductase subunit beta;protein_id=WP_023254357.1;transl_table=11
NZ_APAH01000228.1	RefSeq	gene	6908	7603	.	+	.	ID=gene-CFSAN001082_RS35255;Name=narW;gbkey=Gene;gene=narW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35255;old_locus_tag=CFSAN001082_11504
NZ_APAH01000228.1	Protein Homology	CDS	6908	7603	.	+	0	ID=cds-WP_001166287.1;Parent=gene-CFSAN001082_RS35255;Dbxref=GenBank:WP_001166287.1;Name=WP_001166287.1;Ontology_term=GO:0051131,GO:0051082;gbkey=CDS;gene=narW;go_function=unfolded protein binding|0051082||IEA;go_process=chaperone-mediated protein complex assembly|0051131||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460538.1;locus_tag=CFSAN001082_RS35255;product=nitrate reductase molybdenum cofactor assembly chaperone;protein_id=WP_001166287.1;transl_table=11
NZ_APAH01000228.1	RefSeq	gene	7600	8280	.	+	.	ID=gene-CFSAN001082_RS35260;Name=narI;gbkey=Gene;gene=narI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35260;old_locus_tag=CFSAN001082_11509
NZ_APAH01000228.1	Protein Homology	CDS	7600	8280	.	+	0	ID=cds-WP_000617103.1;Parent=gene-CFSAN001082_RS35260;Dbxref=GenBank:WP_000617103.1;Name=WP_000617103.1;Ontology_term=GO:0019645,GO:0008940,GO:0009325;gbkey=CDS;gene=narI;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460539.1;locus_tag=CFSAN001082_RS35260;product=respiratory nitrate reductase subunit gamma;protein_id=WP_000617103.1;transl_table=11
NZ_APAH01000228.1	RefSeq	gene	8387	9280	.	+	.	ID=gene-CFSAN001082_RS35265;Name=CFSAN001082_RS35265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35265;old_locus_tag=CFSAN001082_11514
NZ_APAH01000228.1	Protein Homology	CDS	8387	9280	.	+	0	ID=cds-WP_023254358.1;Parent=gene-CFSAN001082_RS35265;Dbxref=GenBank:WP_023254358.1;Name=WP_023254358.1;Ontology_term=GO:0009058,GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460540.1;locus_tag=CFSAN001082_RS35265;product=PhzF family isomerase;protein_id=WP_023254358.1;transl_table=11
NZ_APAH01000228.1	RefSeq	gene	9316	10161	.	-	.	ID=gene-CFSAN001082_RS35270;Name=nhoA;gbkey=Gene;gene=nhoA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35270;old_locus_tag=CFSAN001082_11519
NZ_APAH01000228.1	Protein Homology	CDS	9316	10161	.	-	0	ID=cds-WP_000200332.1;Parent=gene-CFSAN001082_RS35270;Dbxref=GenBank:WP_000200332.1;Name=WP_000200332.1;Ontology_term=GO:0016407;gbkey=CDS;gene=nhoA;go_function=acetyltransferase activity|0016407||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460541.1;locus_tag=CFSAN001082_RS35270;product=N-hydroxyarylamine O-acetyltransferase;protein_id=WP_000200332.1;transl_table=11
NZ_APAH01000228.1	RefSeq	gene	10445	11077	.	-	.	ID=gene-CFSAN001082_RS35275;Name=steA;gbkey=Gene;gene=steA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35275;old_locus_tag=CFSAN001082_11524
NZ_APAH01000228.1	Protein Homology	CDS	10445	11077	.	-	0	ID=cds-WP_023254359.1;Parent=gene-CFSAN001082_RS35275;Dbxref=GenBank:WP_023254359.1;Name=WP_023254359.1;gbkey=CDS;gene=steA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460542.1;locus_tag=CFSAN001082_RS35275;product=type III secretion system effector SteA;protein_id=WP_023254359.1;transl_table=11
NZ_APAH01000228.1	RefSeq	gene	11590	13083	.	+	.	ID=gene-CFSAN001082_RS35280;Name=ansP;gbkey=Gene;gene=ansP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35280;old_locus_tag=CFSAN001082_11529
NZ_APAH01000228.1	Protein Homology	CDS	11590	13083	.	+	0	ID=cds-WP_000857112.1;Parent=gene-CFSAN001082_RS35280;Dbxref=GenBank:WP_000857112.1;Name=WP_000857112.1;Ontology_term=GO:0006865,GO:0016020;gbkey=CDS;gene=ansP;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460543.1;locus_tag=CFSAN001082_RS35280;product=L-asparagine permease;protein_id=WP_000857112.1;transl_table=11
NZ_APAH01000228.1	RefSeq	gene	13160	13381	.	-	.	ID=gene-CFSAN001082_RS35285;Name=CFSAN001082_RS35285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35285;old_locus_tag=CFSAN001082_11534
NZ_APAH01000228.1	Protein Homology	CDS	13160	13381	.	-	0	ID=cds-WP_000732362.1;Parent=gene-CFSAN001082_RS35285;Dbxref=GenBank:WP_000732362.1;Name=WP_000732362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460544.1;locus_tag=CFSAN001082_RS35285;product=YgdI/YgdR family lipoprotein;protein_id=WP_000732362.1;transl_table=11
NZ_APAH01000228.1	RefSeq	gene	13526	14587	.	-	.	ID=gene-CFSAN001082_RS35290;Name=CFSAN001082_RS35290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35290;old_locus_tag=CFSAN001082_11539
NZ_APAH01000228.1	Protein Homology	CDS	13526	14587	.	-	0	ID=cds-WP_023254360.1;Parent=gene-CFSAN001082_RS35290;Dbxref=GenBank:WP_023254360.1;Name=WP_023254360.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460545.1;locus_tag=CFSAN001082_RS35290;product=YncE family protein;protein_id=WP_023254360.1;transl_table=11
NZ_APAH01000228.1	RefSeq	gene	14851	16971	.	+	.	ID=gene-CFSAN001082_RS35295;Name=pqqU;gbkey=Gene;gene=pqqU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35295;old_locus_tag=CFSAN001082_11544
NZ_APAH01000228.1	Protein Homology	CDS	14851	16971	.	+	0	ID=cds-WP_000692037.1;Parent=gene-CFSAN001082_RS35295;Dbxref=GenBank:WP_000692037.1;Name=WP_000692037.1;gbkey=CDS;gene=pqqU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460546.1;locus_tag=CFSAN001082_RS35295;product=TonB-dependent receptor PqqU;protein_id=WP_000692037.1;transl_table=11
NZ_APAH01000228.1	RefSeq	gene	17038	17703	.	-	.	ID=gene-CFSAN001082_RS35300;Name=mcbR;gbkey=Gene;gene=mcbR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35300;old_locus_tag=CFSAN001082_11549
NZ_APAH01000228.1	Protein Homology	CDS	17038	17703	.	-	0	ID=cds-WP_001119592.1;Parent=gene-CFSAN001082_RS35300;Dbxref=GenBank:WP_001119592.1;Name=WP_001119592.1;gbkey=CDS;gene=mcbR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460547.1;locus_tag=CFSAN001082_RS35300;product=colanic acid/biofilm transcriptional regulator McbR;protein_id=WP_001119592.1;transl_table=11
##sequence-region NZ_APAH01000229.1 1 9648
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000229.1	RefSeq	region	1	9648	.	+	.	ID=NZ_APAH01000229.1:1..9648;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000229.1	RefSeq	gene	403	1416	.	+	.	ID=gene-CFSAN001082_RS35305;Name=trpS;gbkey=Gene;gene=trpS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35305;old_locus_tag=CFSAN001082_11559
NZ_APAH01000229.1	Protein Homology	CDS	403	1416	.	+	0	ID=cds-WP_001094615.1;Parent=gene-CFSAN001082_RS35305;Dbxref=GenBank:WP_001094615.1;Name=WP_001094615.1;Ontology_term=GO:0006436,GO:0000166,GO:0004830,GO:0005524;gbkey=CDS;gene=trpS;go_function=nucleotide binding|0000166||IEA,tryptophan-tRNA ligase activity|0004830||IEA,ATP binding|0005524||IEA;go_process=tryptophanyl-tRNA aminoacylation|0006436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463367.1;locus_tag=CFSAN001082_RS35305;product=tryptophan--tRNA ligase;protein_id=WP_001094615.1;transl_table=11
NZ_APAH01000229.1	RefSeq	gene	1417	2190	.	-	.	ID=gene-CFSAN001082_RS35310;Name=uxuR;gbkey=Gene;gene=uxuR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35310;old_locus_tag=CFSAN001082_11564
NZ_APAH01000229.1	Protein Homology	CDS	1417	2190	.	-	0	ID=cds-WP_000841654.1;Parent=gene-CFSAN001082_RS35310;Dbxref=GenBank:WP_000841654.1;Name=WP_000841654.1;gbkey=CDS;gene=uxuR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463366.1;locus_tag=CFSAN001082_RS35310;product=Uxu operon transcriptional regulator;protein_id=WP_000841654.1;transl_table=11
NZ_APAH01000229.1	RefSeq	gene	2540	3205	.	+	.	ID=gene-CFSAN001082_RS35315;Name=CFSAN001082_RS35315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35315;old_locus_tag=CFSAN001082_11569
NZ_APAH01000229.1	Protein Homology	CDS	2540	3205	.	+	0	ID=cds-WP_001661946.1;Parent=gene-CFSAN001082_RS35315;Dbxref=GenBank:WP_001661946.1;Name=WP_001661946.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000588696.1;locus_tag=CFSAN001082_RS35315;product=dienelactone hydrolase family protein;protein_id=WP_001661946.1;transl_table=11
NZ_APAH01000229.1	RefSeq	gene	3222	3683	.	-	.	ID=gene-CFSAN001082_RS35320;Name=CFSAN001082_RS35320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35320;old_locus_tag=CFSAN001082_11574
NZ_APAH01000229.1	Protein Homology	CDS	3222	3683	.	-	0	ID=cds-WP_001654330.1;Parent=gene-CFSAN001082_RS35320;Dbxref=GenBank:WP_001654330.1;Name=WP_001654330.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463364.1;locus_tag=CFSAN001082_RS35320;product=DUF302 domain-containing protein;protein_id=WP_001654330.1;transl_table=11
NZ_APAH01000229.1	RefSeq	gene	3888	4799	.	-	.	ID=gene-CFSAN001082_RS35325;Name=CFSAN001082_RS35325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35325;old_locus_tag=CFSAN001082_11579
NZ_APAH01000229.1	Protein Homology	CDS	3888	4799	.	-	0	ID=cds-WP_000556774.1;Parent=gene-CFSAN001082_RS35325;Dbxref=GenBank:WP_000556774.1;Name=WP_000556774.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463363.1;locus_tag=CFSAN001082_RS35325;product=STM4504/CBY_0614 family protein;protein_id=WP_000556774.1;transl_table=11
NZ_APAH01000229.1	RefSeq	gene	5073	6068	.	-	.	ID=gene-CFSAN001082_RS35330;Name=CFSAN001082_RS35330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35330;old_locus_tag=CFSAN001082_11584
NZ_APAH01000229.1	Protein Homology	CDS	5073	6068	.	-	0	ID=cds-WP_023254362.1;Parent=gene-CFSAN001082_RS35330;Dbxref=GenBank:WP_023254362.1;Name=WP_023254362.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001240361.1;locus_tag=CFSAN001082_RS35330;product=hypothetical protein;protein_id=WP_023254362.1;transl_table=11
NZ_APAH01000229.1	RefSeq	gene	6322	6930	.	-	.	ID=gene-CFSAN001082_RS35335;Name=CFSAN001082_RS35335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35335;old_locus_tag=CFSAN001082_11589
NZ_APAH01000229.1	Protein Homology	CDS	6322	6930	.	-	0	ID=cds-WP_023254363.1;Parent=gene-CFSAN001082_RS35335;Dbxref=GenBank:WP_023254363.1;Name=WP_023254363.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463361.1;locus_tag=CFSAN001082_RS35335;product=DUF1062 domain-containing protein;protein_id=WP_023254363.1;transl_table=11
NZ_APAH01000229.1	RefSeq	gene	7418	7675	.	+	.	ID=gene-CFSAN001082_RS35340;Name=CFSAN001082_RS35340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35340;old_locus_tag=CFSAN001082_11594
NZ_APAH01000229.1	Protein Homology	CDS	7418	7675	.	+	0	ID=cds-WP_001054381.1;Parent=gene-CFSAN001082_RS35340;Dbxref=GenBank:WP_001054381.1;Name=WP_001054381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463360.1;locus_tag=CFSAN001082_RS35340;product=YjhX family toxin;protein_id=WP_001054381.1;transl_table=11
NZ_APAH01000229.1	RefSeq	gene	7680	9311	.	+	.	ID=gene-CFSAN001082_RS0123505;Name=CFSAN001082_RS0123505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123505
NZ_APAH01000229.1	Protein Homology	CDS	7680	9311	.	+	0	ID=cds-WP_077911154.1;Parent=gene-CFSAN001082_RS0123505;Dbxref=GenBank:WP_077911154.1;Name=WP_077911154.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463359.1;locus_tag=CFSAN001082_RS0123505;product=class I SAM-dependent methyltransferase;protein_id=WP_077911154.1;transl_table=11
##sequence-region NZ_APAH01000230.1 1 663
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000230.1	RefSeq	region	1	663	.	+	.	ID=NZ_APAH01000230.1:1..663;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000230.1	RefSeq	pseudogene	1	663	.	-	.	ID=gene-CFSAN001082_RS35345;Name=CFSAN001082_RS35345;end_range=663,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS35345;old_locus_tag=CFSAN001082_11604;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000230.1	Protein Homology	CDS	1	663	.	-	2	ID=cds-CFSAN001082_RS35345;Parent=gene-CFSAN001082_RS35345;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=663,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460656.1;locus_tag=CFSAN001082_RS35345;partial=true;product=Secreted effector kinase SteC;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000231.1 1 1667
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000231.1	RefSeq	region	1	1667	.	+	.	ID=NZ_APAH01000231.1:1..1667;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000231.1	RefSeq	gene	1	480	.	+	.	ID=gene-CFSAN001082_RS35350;Name=CFSAN001082_RS35350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35350;old_locus_tag=CFSAN001082_11609;partial=true;start_range=.,1
NZ_APAH01000231.1	Protein Homology	CDS	1	480	.	+	0	ID=cds-WP_023254365.1;Parent=gene-CFSAN001082_RS35350;Dbxref=GenBank:WP_023254365.1;Name=WP_023254365.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460594.1;locus_tag=CFSAN001082_RS35350;partial=true;product=ATP-binding cassette domain-containing protein;protein_id=WP_023254365.1;start_range=.,1;transl_table=11
NZ_APAH01000231.1	RefSeq	gene	477	1157	.	+	.	ID=gene-CFSAN001082_RS35355;Name=CFSAN001082_RS35355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35355;old_locus_tag=CFSAN001082_11614
NZ_APAH01000231.1	Protein Homology	CDS	477	1157	.	+	0	ID=cds-WP_023227539.1;Parent=gene-CFSAN001082_RS35355;Dbxref=GenBank:WP_023227539.1;Name=WP_023227539.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460595.1;locus_tag=CFSAN001082_RS35355;product=amino acid ABC transporter permease;protein_id=WP_023227539.1;transl_table=11
NZ_APAH01000231.1	RefSeq	pseudogene	1294	1667	.	+	.	ID=gene-CFSAN001082_RS0123510;Name=CFSAN001082_RS0123510;end_range=1667,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0123510;partial=true;pseudo=true
NZ_APAH01000231.1	Protein Homology	CDS	1294	1667	.	+	0	ID=cds-CFSAN001082_RS0123510;Parent=gene-CFSAN001082_RS0123510;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=1667,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460596.1;locus_tag=CFSAN001082_RS0123510;partial=true;product=glycosyltransferase family 39 protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000232.1 1 6767
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000232.1	RefSeq	region	1	6767	.	+	.	ID=NZ_APAH01000232.1:1..6767;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000232.1	RefSeq	gene	1	721	.	+	.	ID=gene-CFSAN001082_RS35360;Name=CFSAN001082_RS35360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35360;old_locus_tag=CFSAN001082_11624;partial=true;start_range=.,1
NZ_APAH01000232.1	Protein Homology	CDS	1	721	.	+	1	ID=cds-WP_023254367.1;Parent=gene-CFSAN001082_RS35360;Dbxref=GenBank:WP_023254367.1;Name=WP_023254367.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461217.3;locus_tag=CFSAN001082_RS35360;partial=true;product=GntR family transcriptional regulator;protein_id=WP_023254367.1;start_range=.,1;transl_table=11
NZ_APAH01000232.1	RefSeq	gene	804	1532	.	+	.	ID=gene-CFSAN001082_RS35365;Name=ubiG;gbkey=Gene;gene=ubiG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35365;old_locus_tag=CFSAN001082_11629
NZ_APAH01000232.1	Protein Homology	CDS	804	1532	.	+	0	ID=cds-WP_001091009.1;Parent=gene-CFSAN001082_RS35365;Dbxref=GenBank:WP_001091009.1;Name=WP_001091009.1;Ontology_term=GO:0006744,GO:0061542;gbkey=CDS;gene=ubiG;go_function=3-demethylubiquinol 3-O-methyltransferase activity|0061542||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461218.1;locus_tag=CFSAN001082_RS35365;product=bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG;protein_id=WP_001091009.1;transl_table=11
NZ_APAH01000232.1	RefSeq	gene	1888	4173	.	+	.	ID=gene-CFSAN001082_RS35370;Name=nrdA;gbkey=Gene;gene=nrdA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35370;old_locus_tag=CFSAN001082_11634
NZ_APAH01000232.1	Protein Homology	CDS	1888	4173	.	+	0	ID=cds-WP_023254368.1;Parent=gene-CFSAN001082_RS35370;Dbxref=GenBank:WP_023254368.1;Name=WP_023254368.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;gene=nrdA;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129392.1;locus_tag=CFSAN001082_RS35370;product=class 1a ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_023254368.1;transl_table=11
NZ_APAH01000232.1	RefSeq	gene	4286	5416	.	+	.	ID=gene-CFSAN001082_RS35375;Name=nrdB;gbkey=Gene;gene=nrdB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35375;old_locus_tag=CFSAN001082_11639
NZ_APAH01000232.1	Protein Homology	CDS	4286	5416	.	+	0	ID=cds-WP_000332026.1;Parent=gene-CFSAN001082_RS35375;Dbxref=GenBank:WP_000332026.1;Name=WP_000332026.1;Ontology_term=GO:0009263,GO:0016491;gbkey=CDS;gene=nrdB;go_function=oxidoreductase activity|0016491||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006683700.1;locus_tag=CFSAN001082_RS35375;product=class Ia ribonucleoside-diphosphate reductase subunit beta;protein_id=WP_000332026.1;transl_table=11
NZ_APAH01000232.1	RefSeq	gene	5416	5670	.	+	.	ID=gene-CFSAN001082_RS35380;Name=yfaE;gbkey=Gene;gene=yfaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35380;old_locus_tag=CFSAN001082_11644
NZ_APAH01000232.1	Protein Homology	CDS	5416	5670	.	+	0	ID=cds-WP_000533921.1;Parent=gene-CFSAN001082_RS35380;Dbxref=GenBank:WP_000533921.1;Name=WP_000533921.1;gbkey=CDS;gene=yfaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461221.1;locus_tag=CFSAN001082_RS35380;product=ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE;protein_id=WP_000533921.1;transl_table=11
NZ_APAH01000232.1	RefSeq	gene	5672	6767	.	-	.	ID=gene-CFSAN001082_RS0123515;Name=CFSAN001082_RS0123515;end_range=6767,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123515;old_locus_tag=CFSAN001082_11649;partial=true
NZ_APAH01000232.1	Protein Homology	CDS	5672	6767	.	-	1	ID=cds-WP_031612833.1;Parent=gene-CFSAN001082_RS0123515;Dbxref=GenBank:WP_031612833.1;Name=WP_031612833.1;Ontology_term=GO:0055085,GO:0022857;end_range=6767,.;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461222.1;locus_tag=CFSAN001082_RS0123515;partial=true;product=MFS transporter;protein_id=WP_031612833.1;transl_table=11
##sequence-region NZ_APAH01000233.1 1 14809
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000233.1	RefSeq	region	1	14809	.	+	.	ID=NZ_APAH01000233.1:1..14809;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000233.1	RefSeq	gene	100	1038	.	-	.	ID=gene-CFSAN001082_RS35385;Name=dusC;gbkey=Gene;gene=dusC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35385;old_locus_tag=CFSAN001082_11654
NZ_APAH01000233.1	Protein Homology	CDS	100	1038	.	-	0	ID=cds-WP_017465876.1;Parent=gene-CFSAN001082_RS35385;Dbxref=GenBank:WP_017465876.1;Name=WP_017465876.1;Ontology_term=GO:0002943,GO:0017150,GO:0050660;gbkey=CDS;gene=dusC;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA dihydrouridine synthesis|0002943||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461119.1;locus_tag=CFSAN001082_RS35385;product=tRNA dihydrouridine(16) synthase DusC;protein_id=WP_017465876.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	1147	2340	.	-	.	ID=gene-CFSAN001082_RS35390;Name=CFSAN001082_RS35390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35390;old_locus_tag=CFSAN001082_11659
NZ_APAH01000233.1	Protein Homology	CDS	1147	2340	.	-	0	ID=cds-WP_000150103.1;Parent=gene-CFSAN001082_RS35390;Dbxref=GenBank:WP_000150103.1;Name=WP_000150103.1;Ontology_term=GO:0071949;gbkey=CDS;go_function=FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461120.1;locus_tag=CFSAN001082_RS35390;product=3-hydroxybenzoate 6-monooxygenase;protein_id=WP_000150103.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	2355	2999	.	-	.	ID=gene-CFSAN001082_RS35395;Name=maiA;gbkey=Gene;gene=maiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35395;old_locus_tag=CFSAN001082_11664
NZ_APAH01000233.1	Protein Homology	CDS	2355	2999	.	-	0	ID=cds-WP_000781183.1;Parent=gene-CFSAN001082_RS35395;Dbxref=GenBank:WP_000781183.1;Name=WP_000781183.1;Ontology_term=GO:0006559,GO:0006572,GO:0016034,GO:0005737;gbkey=CDS;gene=maiA;go_component=cytoplasm|0005737||IEA;go_function=maleylacetoacetate isomerase activity|0016034||IEA;go_process=L-phenylalanine catabolic process|0006559||IEA,tyrosine catabolic process|0006572||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461121.1;locus_tag=CFSAN001082_RS35395;product=maleylacetoacetate isomerase;protein_id=WP_000781183.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	3008	3709	.	-	.	ID=gene-CFSAN001082_RS35400;Name=CFSAN001082_RS35400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35400;old_locus_tag=CFSAN001082_11669
NZ_APAH01000233.1	Protein Homology	CDS	3008	3709	.	-	0	ID=cds-WP_000170621.1;Parent=gene-CFSAN001082_RS35400;Dbxref=GenBank:WP_000170621.1;Name=WP_000170621.1;Ontology_term=GO:0003824,GO:0016787;gbkey=CDS;go_function=catalytic activity|0003824||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461122.1;locus_tag=CFSAN001082_RS35400;product=fumarylacetoacetate hydrolase family protein;protein_id=WP_000170621.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	3727	4764	.	-	.	ID=gene-CFSAN001082_RS35405;Name=gtdA;gbkey=Gene;gene=gtdA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35405;old_locus_tag=CFSAN001082_11674
NZ_APAH01000233.1	Protein Homology	CDS	3727	4764	.	-	0	ID=cds-WP_023254370.1;Parent=gene-CFSAN001082_RS35405;Dbxref=GenBank:WP_023254370.1;Name=WP_023254370.1;Ontology_term=GO:0047922;gbkey=CDS;gene=gtdA;go_function=gentisate 1%2C2-dioxygenase activity|0047922||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461123.1;locus_tag=CFSAN001082_RS35405;product=gentisate 1%2C2-dioxygenase;protein_id=WP_023254370.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	4776	6134	.	-	.	ID=gene-CFSAN001082_RS35410;Name=mhbT;gbkey=Gene;gene=mhbT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35410;old_locus_tag=CFSAN001082_11679
NZ_APAH01000233.1	Protein Homology	CDS	4776	6134	.	-	0	ID=cds-WP_000194222.1;Parent=gene-CFSAN001082_RS35410;Dbxref=GenBank:WP_000194222.1;Name=WP_000194222.1;gbkey=CDS;gene=mhbT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461124.1;locus_tag=CFSAN001082_RS35410;product=3-hydroxybenzoate transporter MhbT;protein_id=WP_000194222.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	6260	7168	.	+	.	ID=gene-CFSAN001082_RS35415;Name=CFSAN001082_RS35415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35415;old_locus_tag=CFSAN001082_11684
NZ_APAH01000233.1	Protein Homology	CDS	6260	7168	.	+	0	ID=cds-WP_000024658.1;Parent=gene-CFSAN001082_RS35415;Dbxref=GenBank:WP_000024658.1;Name=WP_000024658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461125.1;locus_tag=CFSAN001082_RS35415;product=LysR substrate-binding domain-containing protein;protein_id=WP_000024658.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	7300	7698	.	+	.	ID=gene-CFSAN001082_RS35420;Name=CFSAN001082_RS35420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35420;old_locus_tag=CFSAN001082_11689
NZ_APAH01000233.1	Protein Homology	CDS	7300	7698	.	+	0	ID=cds-WP_000045719.1;Parent=gene-CFSAN001082_RS35420;Dbxref=GenBank:WP_000045719.1;Name=WP_000045719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461126.1;locus_tag=CFSAN001082_RS35420;product=CidA/LrgA family protein;protein_id=WP_000045719.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	7695	8390	.	+	.	ID=gene-CFSAN001082_RS35425;Name=CFSAN001082_RS35425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35425;old_locus_tag=CFSAN001082_11694
NZ_APAH01000233.1	Protein Homology	CDS	7695	8390	.	+	0	ID=cds-WP_000989296.1;Parent=gene-CFSAN001082_RS35425;Dbxref=GenBank:WP_000989296.1;Name=WP_000989296.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461127.1;locus_tag=CFSAN001082_RS35425;product=CidB/LrgB family autolysis modulator;protein_id=WP_000989296.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	8544	9428	.	+	.	ID=gene-CFSAN001082_RS35430;Name=cdd;gbkey=Gene;gene=cdd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35430;old_locus_tag=CFSAN001082_11699
NZ_APAH01000233.1	Protein Homology	CDS	8544	9428	.	+	0	ID=cds-WP_000553526.1;Parent=gene-CFSAN001082_RS35430;Dbxref=GenBank:WP_000553526.1;Name=WP_000553526.1;Ontology_term=GO:0009972,GO:0004126,GO:0008270;gbkey=CDS;gene=cdd;go_function=cytidine deaminase activity|0004126||IEA,zinc ion binding|0008270||IEA;go_process=cytidine deamination|0009972||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461128.1;locus_tag=CFSAN001082_RS35430;product=cytidine deaminase;protein_id=WP_000553526.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	9605	10324	.	+	.	ID=gene-CFSAN001082_RS35435;Name=sanA;gbkey=Gene;gene=sanA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35435;old_locus_tag=CFSAN001082_11704
NZ_APAH01000233.1	Protein Homology	CDS	9605	10324	.	+	0	ID=cds-WP_000920081.1;Parent=gene-CFSAN001082_RS35435;Dbxref=GenBank:WP_000920081.1;Name=WP_000920081.1;gbkey=CDS;gene=sanA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461129.1;locus_tag=CFSAN001082_RS35435;product=outer membrane permeability protein SanA;protein_id=WP_000920081.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	10321	10566	.	+	.	ID=gene-CFSAN001082_RS35440;Name=CFSAN001082_RS35440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35440;old_locus_tag=CFSAN001082_11709
NZ_APAH01000233.1	Protein Homology	CDS	10321	10566	.	+	0	ID=cds-WP_023254371.1;Parent=gene-CFSAN001082_RS35440;Dbxref=GenBank:WP_023254371.1;Name=WP_023254371.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461130.1;locus_tag=CFSAN001082_RS35440;product=DUF2542 family protein;protein_id=WP_023254371.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	10771	12012	.	+	.	ID=gene-CFSAN001082_RS35445;Name=CFSAN001082_RS35445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35445;old_locus_tag=CFSAN001082_11714
NZ_APAH01000233.1	Protein Homology	CDS	10771	12012	.	+	0	ID=cds-WP_020899016.1;Parent=gene-CFSAN001082_RS35445;Dbxref=GenBank:WP_020899016.1;Name=WP_020899016.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461131.1;locus_tag=CFSAN001082_RS35445;product=NAD(P)-dependent oxidoreductase;protein_id=WP_020899016.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	12006	13241	.	+	.	ID=gene-CFSAN001082_RS35450;Name=preA;gbkey=Gene;gene=preA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35450;old_locus_tag=CFSAN001082_11719
NZ_APAH01000233.1	Protein Homology	CDS	12006	13241	.	+	0	ID=cds-WP_023254372.1;Parent=gene-CFSAN001082_RS35450;Dbxref=GenBank:WP_023254372.1;Name=WP_023254372.1;Ontology_term=GO:0006210,GO:0006212,GO:0017113;gbkey=CDS;gene=preA;go_function=dihydropyrimidine dehydrogenase (NADP+) activity|0017113||IEA;go_process=thymine catabolic process|0006210||IEA,uracil catabolic process|0006212||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461132.1;locus_tag=CFSAN001082_RS35450;product=NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;protein_id=WP_023254372.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	13316	14326	.	-	.	ID=gene-CFSAN001082_RS35455;Name=mglC;gbkey=Gene;gene=mglC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35455;old_locus_tag=CFSAN001082_11724
NZ_APAH01000233.1	Protein Homology	CDS	13316	14326	.	-	0	ID=cds-WP_001275101.1;Parent=gene-CFSAN001082_RS35455;Dbxref=GenBank:WP_001275101.1;Name=WP_001275101.1;Ontology_term=GO:0008643,GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mglC;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129205.1;locus_tag=CFSAN001082_RS35455;product=galactose/methyl galactoside ABC transporter permease MglC;protein_id=WP_001275101.1;transl_table=11
NZ_APAH01000233.1	RefSeq	gene	14342	14809	.	-	.	ID=gene-CFSAN001082_RS35460;Name=CFSAN001082_RS35460;end_range=14809,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35460;old_locus_tag=CFSAN001082_11729;partial=true
NZ_APAH01000233.1	Protein Homology	CDS	14342	14809	.	-	0	ID=cds-WP_031612835.1;Parent=gene-CFSAN001082_RS35460;Dbxref=GenBank:WP_031612835.1;Name=WP_031612835.1;Ontology_term=GO:0005524;end_range=14809,.;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311068.1;locus_tag=CFSAN001082_RS35460;partial=true;product=ATP-binding cassette domain-containing protein;protein_id=WP_031612835.1;transl_table=11
##sequence-region NZ_APAH01000234.1 1 18368
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000234.1	RefSeq	region	1	18368	.	+	.	ID=NZ_APAH01000234.1:1..18368;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000234.1	RefSeq	gene	98	1534	.	+	.	ID=gene-CFSAN001082_RS35465;Name=mdtQ;gbkey=Gene;gene=mdtQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35465;old_locus_tag=CFSAN001082_11734
NZ_APAH01000234.1	Protein Homology	CDS	98	1534	.	+	0	ID=cds-WP_023254374.1;Parent=gene-CFSAN001082_RS35465;Dbxref=GenBank:WP_023254374.1;Name=WP_023254374.1;Ontology_term=GO:0055085,GO:0015562,GO:0016020;gbkey=CDS;gene=mdtQ;go_component=membrane|0016020||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461117.1;locus_tag=CFSAN001082_RS35465;product=multidrug resistance outer membrane protein MdtQ;protein_id=WP_023254374.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	1600	2361	.	+	.	ID=gene-CFSAN001082_RS35470;Name=CFSAN001082_RS35470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35470;old_locus_tag=CFSAN001082_11739
NZ_APAH01000234.1	Protein Homology	CDS	1600	2361	.	+	0	ID=cds-WP_000169608.1;Parent=gene-CFSAN001082_RS35470;Dbxref=GenBank:WP_000169608.1;Name=WP_000169608.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461116.1;locus_tag=CFSAN001082_RS35470;product=SDR family oxidoreductase;protein_id=WP_000169608.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	2409	2978	.	-	.	ID=gene-CFSAN001082_RS35475;Name=CFSAN001082_RS35475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35475;old_locus_tag=CFSAN001082_11744
NZ_APAH01000234.1	Protein Homology	CDS	2409	2978	.	-	0	ID=cds-WP_001523476.1;Parent=gene-CFSAN001082_RS35475;Dbxref=GenBank:WP_001523476.1;Name=WP_001523476.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001669449.1;locus_tag=CFSAN001082_RS35475;product=DedA family protein;protein_id=WP_001523476.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	3137	3724	.	+	.	ID=gene-CFSAN001082_RS35480;Name=CFSAN001082_RS35480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35480;old_locus_tag=CFSAN001082_11749
NZ_APAH01000234.1	Protein Homology	CDS	3137	3724	.	+	0	ID=cds-WP_001017057.1;Parent=gene-CFSAN001082_RS35480;Dbxref=GenBank:WP_001017057.1;Name=WP_001017057.1;Ontology_term=GO:0016192,GO:0031267;gbkey=CDS;go_function=small GTPase binding|0031267||IEA;go_process=vesicle-mediated transport|0016192||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014170891.1;locus_tag=CFSAN001082_RS35480;product=Yip1 family protein;protein_id=WP_001017057.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	3890	4837	.	+	.	ID=gene-CFSAN001082_RS35485;Name=pbpG;gbkey=Gene;gene=pbpG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35485;old_locus_tag=CFSAN001082_11754
NZ_APAH01000234.1	Protein Homology	CDS	3890	4837	.	+	0	ID=cds-WP_000911555.1;Parent=gene-CFSAN001082_RS35485;Dbxref=GenBank:WP_000911555.1;Name=WP_000911555.1;Ontology_term=GO:0006508,GO:0009002;gbkey=CDS;gene=pbpG;go_function=serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461113.1;locus_tag=CFSAN001082_RS35485;product=D-alanyl-D-alanine endopeptidase;protein_id=WP_000911555.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	4895	6625	.	-	.	ID=gene-CFSAN001082_RS35490;Name=dld;gbkey=Gene;gene=dld;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35490;old_locus_tag=CFSAN001082_11759
NZ_APAH01000234.1	Protein Homology	CDS	4895	6625	.	-	0	ID=cds-WP_000095234.1;Parent=gene-CFSAN001082_RS35490;Dbxref=GenBank:WP_000095234.1;Name=WP_000095234.1;Ontology_term=GO:0006089,GO:0016901;gbkey=CDS;gene=dld;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C quinone or similar compound as acceptor|0016901||IEA;go_process=lactate metabolic process|0006089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461112.1;locus_tag=CFSAN001082_RS35490;product=D-lactate dehydrogenase;protein_id=WP_000095234.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	6892	9189	.	+	.	ID=gene-CFSAN001082_RS35495;Name=bglX;gbkey=Gene;gene=bglX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35495;old_locus_tag=CFSAN001082_11764
NZ_APAH01000234.1	Protein Homology	CDS	6892	9189	.	+	0	ID=cds-WP_000871554.1;Parent=gene-CFSAN001082_RS35495;Dbxref=GenBank:WP_000871554.1;Name=WP_000871554.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=bglX;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461111.1;locus_tag=CFSAN001082_RS35495;product=beta-glucosidase BglX;protein_id=WP_000871554.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	9370	10287	.	+	.	ID=gene-CFSAN001082_RS35500;Name=osmF;gbkey=Gene;gene=osmF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35500;old_locus_tag=CFSAN001082_11769
NZ_APAH01000234.1	Protein Homology	CDS	9370	10287	.	+	0	ID=cds-WP_000155876.1;Parent=gene-CFSAN001082_RS35500;Dbxref=GenBank:WP_000155876.1;Name=WP_000155876.1;Ontology_term=GO:0031460,GO:0022857;gbkey=CDS;gene=osmF;go_function=transmembrane transporter activity|0022857||IEA;go_process=glycine betaine transport|0031460||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461110.1;locus_tag=CFSAN001082_RS35500;product=glycine betaine ABC transporter substrate-binding protein OsmF;protein_id=WP_000155876.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	10291	11460	.	+	.	ID=gene-CFSAN001082_RS35505;Name=CFSAN001082_RS35505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35505;old_locus_tag=CFSAN001082_11774
NZ_APAH01000234.1	Protein Homology	CDS	10291	11460	.	+	0	ID=cds-WP_023254375.1;Parent=gene-CFSAN001082_RS35505;Dbxref=GenBank:WP_023254375.1;Name=WP_023254375.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461109.1;locus_tag=CFSAN001082_RS35505;product=ABC transporter permease;protein_id=WP_023254375.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	11453	12400	.	+	.	ID=gene-CFSAN001082_RS35510;Name=CFSAN001082_RS35510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35510;old_locus_tag=CFSAN001082_11779
NZ_APAH01000234.1	Protein Homology	CDS	11453	12400	.	+	0	ID=cds-WP_000569166.1;Parent=gene-CFSAN001082_RS35510;Dbxref=GenBank:WP_000569166.1;Name=WP_000569166.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461108.1;locus_tag=CFSAN001082_RS35510;product=ABC transporter ATP-binding protein;protein_id=WP_000569166.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	12384	13115	.	+	.	ID=gene-CFSAN001082_RS35515;Name=CFSAN001082_RS35515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35515;old_locus_tag=CFSAN001082_11784
NZ_APAH01000234.1	Protein Homology	CDS	12384	13115	.	+	0	ID=cds-WP_000824854.1;Parent=gene-CFSAN001082_RS35515;Dbxref=GenBank:WP_000824854.1;Name=WP_000824854.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461107.1;locus_tag=CFSAN001082_RS35515;product=ABC transporter permease;protein_id=WP_000824854.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	13096	13203	.	-	.	ID=gene-CFSAN001082_RS35520;Name=CFSAN001082_RS35520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35520;old_locus_tag=CFSAN001082_11789
NZ_APAH01000234.1	Protein Homology	CDS	13096	13203	.	-	0	ID=cds-WP_001261696.1;Parent=gene-CFSAN001082_RS35520;Dbxref=GenBank:WP_001261696.1;Name=WP_001261696.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461106.1;locus_tag=CFSAN001082_RS35520;product=protein YohO;protein_id=WP_001261696.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	13263	13994	.	-	.	ID=gene-CFSAN001082_RS35525;Name=mlrA;gbkey=Gene;gene=mlrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35525;old_locus_tag=CFSAN001082_11794
NZ_APAH01000234.1	Protein Homology	CDS	13263	13994	.	-	0	ID=cds-WP_001240418.1;Parent=gene-CFSAN001082_RS35525;Dbxref=GenBank:WP_001240418.1;Name=WP_001240418.1;gbkey=CDS;gene=mlrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461105.1;locus_tag=CFSAN001082_RS35525;product=HTH-type transcriptional regulator MlrA;protein_id=WP_001240418.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	14217	15902	.	+	.	ID=gene-CFSAN001082_RS35530;Name=CFSAN001082_RS35530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35530;old_locus_tag=CFSAN001082_11799
NZ_APAH01000234.1	Protein Homology	CDS	14217	15902	.	+	0	ID=cds-WP_000272850.1;Parent=gene-CFSAN001082_RS35530;Dbxref=GenBank:WP_000272850.1;Name=WP_000272850.1;Ontology_term=GO:0000160,GO:0071555,GO:0000155,GO:0004673,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461104.1;locus_tag=CFSAN001082_RS35530;product=sensor histidine kinase;protein_id=WP_000272850.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	15899	16618	.	+	.	ID=gene-CFSAN001082_RS35535;Name=btsR;gbkey=Gene;gene=btsR;gene_biotype=protein_coding;gene_synonym=yehT;locus_tag=CFSAN001082_RS35535;old_locus_tag=CFSAN001082_11804
NZ_APAH01000234.1	Protein Homology	CDS	15899	16618	.	+	0	ID=cds-WP_000598637.1;Parent=gene-CFSAN001082_RS35535;Dbxref=GenBank:WP_000598637.1;Name=WP_000598637.1;gbkey=CDS;gene=btsR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461103.1;locus_tag=CFSAN001082_RS35535;product=two-component system response regulator BtsR;protein_id=WP_000598637.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	16665	17132	.	+	.	ID=gene-CFSAN001082_RS35540;Name=CFSAN001082_RS35540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35540;old_locus_tag=CFSAN001082_11809
NZ_APAH01000234.1	Protein Homology	CDS	16665	17132	.	+	0	ID=cds-WP_000950413.1;Parent=gene-CFSAN001082_RS35540;Dbxref=GenBank:WP_000950413.1;Name=WP_000950413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461102.1;locus_tag=CFSAN001082_RS35540;product=DUF1456 family protein;protein_id=WP_000950413.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	17189	17719	.	-	.	ID=gene-CFSAN001082_RS35545;Name=CFSAN001082_RS35545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35545;old_locus_tag=CFSAN001082_11814
NZ_APAH01000234.1	Protein Homology	CDS	17189	17719	.	-	0	ID=cds-WP_023254376.1;Parent=gene-CFSAN001082_RS35545;Dbxref=GenBank:WP_023254376.1;Name=WP_023254376.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461101.1;locus_tag=CFSAN001082_RS35545;product=YehR family lipoprotein;protein_id=WP_023254376.1;transl_table=11
NZ_APAH01000234.1	RefSeq	gene	17891	18349	.	-	.	ID=gene-CFSAN001082_RS35550;Name=CFSAN001082_RS35550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35550;old_locus_tag=CFSAN001082_11819
NZ_APAH01000234.1	Protein Homology	CDS	17891	18349	.	-	0	ID=cds-WP_000703137.1;Parent=gene-CFSAN001082_RS35550;Dbxref=GenBank:WP_000703137.1;Name=WP_000703137.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461100.1;locus_tag=CFSAN001082_RS35550;product=YehR family lipoprotein;protein_id=WP_000703137.1;transl_table=11
##sequence-region NZ_APAH01000235.1 1 457
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000235.1	RefSeq	region	1	457	.	+	.	ID=NZ_APAH01000235.1:1..457;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000235.1	RefSeq	pseudogene	1	233	.	-	.	ID=gene-CFSAN001082_RS35555;Name=rcsA;gbkey=Gene;gene=rcsA;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS35555;old_locus_tag=CFSAN001082_11824;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000235.1	Protein Homology	CDS	1	233	.	-	0	ID=cds-CFSAN001082_RS35555;Parent=gene-CFSAN001082_RS35555;Note=with RcsB is a positive regulator of capsular polysaccharide synthesis genes%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=rcsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460935.1;locus_tag=CFSAN001082_RS35555;partial=true;product=transcriptional regulator RcsA;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000236.1 1 15245
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000236.1	RefSeq	region	1	15245	.	+	.	ID=NZ_APAH01000236.1:1..15245;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000236.1	RefSeq	gene	169	2025	.	-	.	ID=gene-CFSAN001082_RS35560;Name=gss;gbkey=Gene;gene=gss;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35560;old_locus_tag=CFSAN001082_11829
NZ_APAH01000236.1	Protein Homology	CDS	169	2025	.	-	0	ID=cds-WP_023254378.1;Parent=gene-CFSAN001082_RS35560;Dbxref=GenBank:WP_023254378.1;Name=WP_023254378.1;gbkey=CDS;gene=gss;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462054.1;locus_tag=CFSAN001082_RS35560;product=bifunctional glutathionylspermidine amidase/synthase;protein_id=WP_023254378.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	2252	3118	.	+	.	ID=gene-CFSAN001082_RS35565;Name=yghU;gbkey=Gene;gene=yghU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35565;old_locus_tag=CFSAN001082_11834
NZ_APAH01000236.1	Protein Homology	CDS	2252	3118	.	+	0	ID=cds-WP_023243695.1;Parent=gene-CFSAN001082_RS35565;Dbxref=GenBank:WP_023243695.1;Name=WP_023243695.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;gene=yghU;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462055.1;locus_tag=CFSAN001082_RS35565;product=glutathione-dependent disulfide-bond oxidoreductase;protein_id=WP_023243695.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	3186	3896	.	-	.	ID=gene-CFSAN001082_RS35570;Name=CFSAN001082_RS35570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35570;old_locus_tag=CFSAN001082_11839
NZ_APAH01000236.1	Protein Homology	CDS	3186	3896	.	-	0	ID=cds-WP_001220946.1;Parent=gene-CFSAN001082_RS35570;Dbxref=GenBank:WP_001220946.1;Name=WP_001220946.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462056.1;locus_tag=CFSAN001082_RS35570;product=molybdate ABC transporter substrate-binding protein;protein_id=WP_001220946.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	3896	4948	.	-	.	ID=gene-CFSAN001082_RS35575;Name=CFSAN001082_RS35575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35575;old_locus_tag=CFSAN001082_11844
NZ_APAH01000236.1	Protein Homology	CDS	3896	4948	.	-	0	ID=cds-WP_023254379.1;Parent=gene-CFSAN001082_RS35575;Dbxref=GenBank:WP_023254379.1;Name=WP_023254379.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462057.1;locus_tag=CFSAN001082_RS35575;product=ABC transporter substrate-binding protein;protein_id=WP_023254379.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	5024	5272	.	-	.	ID=gene-CFSAN001082_RS35580;Name=hybG;gbkey=Gene;gene=hybG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35580;old_locus_tag=CFSAN001082_11849
NZ_APAH01000236.1	Protein Homology	CDS	5024	5272	.	-	0	ID=cds-WP_000334887.1;Parent=gene-CFSAN001082_RS35580;Dbxref=GenBank:WP_000334887.1;Name=WP_000334887.1;gbkey=CDS;gene=hybG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462058.1;locus_tag=CFSAN001082_RS35580;product=hydrogenase maturation factor HybG;protein_id=WP_000334887.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	5300	5641	.	-	.	ID=gene-CFSAN001082_RS35585;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35585;old_locus_tag=CFSAN001082_11854
NZ_APAH01000236.1	Protein Homology	CDS	5300	5641	.	-	0	ID=cds-WP_000544945.1;Parent=gene-CFSAN001082_RS35585;Dbxref=GenBank:WP_000544945.1;Name=WP_000544945.1;Ontology_term=GO:0036211,GO:0008901,GO:0016151;gbkey=CDS;gene=hypA;go_function=ferredoxin hydrogenase activity|0008901||IEA,nickel cation binding|0016151||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462059.1;locus_tag=CFSAN001082_RS35585;product=hydrogenase maturation nickel metallochaperone HypA;protein_id=WP_000544945.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	5634	6122	.	-	.	ID=gene-CFSAN001082_RS35590;Name=hybE;gbkey=Gene;gene=hybE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35590;old_locus_tag=CFSAN001082_11859
NZ_APAH01000236.1	Protein Homology	CDS	5634	6122	.	-	0	ID=cds-WP_000004951.1;Parent=gene-CFSAN001082_RS35590;Dbxref=GenBank:WP_000004951.1;Name=WP_000004951.1;gbkey=CDS;gene=hybE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462060.1;locus_tag=CFSAN001082_RS35590;product=hydrogenase-2 assembly chaperone;protein_id=WP_000004951.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	6115	6609	.	-	.	ID=gene-CFSAN001082_RS35595;Name=CFSAN001082_RS35595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35595;old_locus_tag=CFSAN001082_11864
NZ_APAH01000236.1	Protein Homology	CDS	6115	6609	.	-	0	ID=cds-WP_001221962.1;Parent=gene-CFSAN001082_RS35595;Dbxref=GenBank:WP_001221962.1;Name=WP_001221962.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462061.1;locus_tag=CFSAN001082_RS35595;product=HyaD/HybD family hydrogenase maturation endopeptidase;protein_id=WP_001221962.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	6609	8312	.	-	.	ID=gene-CFSAN001082_RS35600;Name=hybC;gbkey=Gene;gene=hybC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35600;old_locus_tag=CFSAN001082_11869
NZ_APAH01000236.1	Protein Homology	CDS	6609	8312	.	-	0	ID=cds-WP_000083045.1;Parent=gene-CFSAN001082_RS35600;Dbxref=GenBank:WP_000083045.1;Name=WP_000083045.1;Ontology_term=GO:0008901;gbkey=CDS;gene=hybC;go_function=ferredoxin hydrogenase activity|0008901||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462062.1;locus_tag=CFSAN001082_RS35600;product=hydrogenase 2 large subunit;protein_id=WP_000083045.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	8309	9487	.	-	.	ID=gene-CFSAN001082_RS35605;Name=hybB;gbkey=Gene;gene=hybB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35605;old_locus_tag=CFSAN001082_11874
NZ_APAH01000236.1	Protein Homology	CDS	8309	9487	.	-	0	ID=cds-WP_000017678.1;Parent=gene-CFSAN001082_RS35605;Dbxref=GenBank:WP_000017678.1;Name=WP_000017678.1;gbkey=CDS;gene=hybB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462063.1;locus_tag=CFSAN001082_RS35605;product=Ni/Fe-hydrogenase cytochrome b subunit;protein_id=WP_000017678.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	9477	10463	.	-	.	ID=gene-CFSAN001082_RS35610;Name=hybA;gbkey=Gene;gene=hybA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35610;old_locus_tag=CFSAN001082_11879
NZ_APAH01000236.1	Protein Homology	CDS	9477	10463	.	-	0	ID=cds-WP_001081721.1;Parent=gene-CFSAN001082_RS35610;Dbxref=GenBank:WP_001081721.1;Name=WP_001081721.1;gbkey=CDS;gene=hybA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462064.1;locus_tag=CFSAN001082_RS35610;product=hydrogenase 2 operon protein HybA;protein_id=WP_001081721.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	10466	11584	.	-	.	ID=gene-CFSAN001082_RS35615;Name=hybO;gbkey=Gene;gene=hybO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35615;old_locus_tag=CFSAN001082_11884
NZ_APAH01000236.1	Protein Homology	CDS	10466	11584	.	-	0	ID=cds-WP_000145429.1;Parent=gene-CFSAN001082_RS35615;Dbxref=GenBank:WP_000145429.1;Name=WP_000145429.1;gbkey=CDS;gene=hybO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462065.1;locus_tag=CFSAN001082_RS35615;product=hydrogenase 2 small subunit;protein_id=WP_000145429.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	11774	12061	.	-	.	ID=gene-CFSAN001082_RS35620;Name=CFSAN001082_RS35620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35620;old_locus_tag=CFSAN001082_11889
NZ_APAH01000236.1	Protein Homology	CDS	11774	12061	.	-	0	ID=cds-WP_001650705.1;Parent=gene-CFSAN001082_RS35620;Dbxref=GenBank:WP_001650705.1;Name=WP_001650705.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462066.1;locus_tag=CFSAN001082_RS35620;product=DUF2623 family protein;protein_id=WP_001650705.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	12146	13789	.	-	.	ID=gene-CFSAN001082_RS35625;Name=CFSAN001082_RS35625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35625;old_locus_tag=CFSAN001082_11894
NZ_APAH01000236.1	Protein Homology	CDS	12146	13789	.	-	0	ID=cds-WP_001238434.1;Parent=gene-CFSAN001082_RS35625;Dbxref=GenBank:WP_001238434.1;Name=WP_001238434.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462067.1;locus_tag=CFSAN001082_RS35625;product=methyl-accepting chemotaxis protein;protein_id=WP_001238434.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	14096	14590	.	-	.	ID=gene-CFSAN001082_RS35630;Name=CFSAN001082_RS35630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35630;old_locus_tag=CFSAN001082_11899
NZ_APAH01000236.1	Protein Homology	CDS	14096	14590	.	-	0	ID=cds-WP_000439335.1;Parent=gene-CFSAN001082_RS35630;Dbxref=GenBank:WP_000439335.1;Name=WP_000439335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462068.1;locus_tag=CFSAN001082_RS35630;product=TIGR00645 family protein;protein_id=WP_000439335.1;transl_table=11
NZ_APAH01000236.1	RefSeq	gene	14661	15164	.	-	.	ID=gene-CFSAN001082_RS35635;Name=CFSAN001082_RS35635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35635;old_locus_tag=CFSAN001082_11904
NZ_APAH01000236.1	Protein Homology	CDS	14661	15164	.	-	0	ID=cds-WP_001084409.1;Parent=gene-CFSAN001082_RS35635;Dbxref=GenBank:WP_001084409.1;Name=WP_001084409.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441059.1;locus_tag=CFSAN001082_RS35635;product=ESA_00282 family adhesion-associated protein;protein_id=WP_001084409.1;transl_table=11
##sequence-region NZ_APAH01000237.1 1 6345
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000237.1	RefSeq	region	1	6345	.	+	.	ID=NZ_APAH01000237.1:1..6345;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000237.1	RefSeq	gene	335	811	.	+	.	ID=gene-CFSAN001082_RS35640;Name=CFSAN001082_RS35640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35640;old_locus_tag=CFSAN001082_11909
NZ_APAH01000237.1	Protein Homology	CDS	335	811	.	+	0	ID=cds-WP_023227996.1;Parent=gene-CFSAN001082_RS35640;Dbxref=GenBank:WP_023227996.1;Name=WP_023227996.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000030934.1;locus_tag=CFSAN001082_RS35640;product=hypothetical protein;protein_id=WP_023227996.1;transl_table=11
NZ_APAH01000237.1	RefSeq	gene	1198	1617	.	-	.	ID=gene-CFSAN001082_RS35645;Name=CFSAN001082_RS35645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35645;old_locus_tag=CFSAN001082_11914
NZ_APAH01000237.1	Protein Homology	CDS	1198	1617	.	-	0	ID=cds-WP_023137951.1;Parent=gene-CFSAN001082_RS35645;Dbxref=GenBank:WP_023137951.1;Name=WP_023137951.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460813.1;locus_tag=CFSAN001082_RS35645;product=GNAT family N-acetyltransferase;protein_id=WP_023137951.1;transl_table=11
NZ_APAH01000237.1	RefSeq	pseudogene	1988	2256	.	+	.	ID=gene-CFSAN001082_RS47865;Name=CFSAN001082_RS47865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47865;pseudo=true
NZ_APAH01000237.1	Protein Homology	CDS	1988	2256	.	+	0	ID=cds-CFSAN001082_RS47865;Parent=gene-CFSAN001082_RS47865;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460814.1;locus_tag=CFSAN001082_RS47865;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000237.1	RefSeq	gene	2422	2562	.	+	.	ID=gene-CFSAN001082_RS0123520;Name=CFSAN001082_RS0123520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123520
NZ_APAH01000237.1	Protein Homology	CDS	2422	2562	.	+	0	ID=cds-WP_031608346.1;Parent=gene-CFSAN001082_RS0123520;Dbxref=GenBank:WP_031608346.1;Name=WP_031608346.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460815.3;locus_tag=CFSAN001082_RS0123520;product=hypothetical protein;protein_id=WP_031608346.1;transl_table=11
NZ_APAH01000237.1	RefSeq	pseudogene	2708	3236	.	-	.	ID=gene-CFSAN001082_RS48545;Name=CFSAN001082_RS48545;end_range=3236,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48545;partial=true;pseudo=true
NZ_APAH01000237.1	Protein Homology	CDS	2708	3236	.	-	0	ID=cds-CFSAN001082_RS48545;Parent=gene-CFSAN001082_RS48545;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=3236,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343613.1;locus_tag=CFSAN001082_RS48545;partial=true;product=transposase;pseudo=true;transl_table=11
NZ_APAH01000237.1	RefSeq	pseudogene	3243	3344	.	-	.	ID=gene-CFSAN001082_RS48550;Name=CFSAN001082_RS48550;end_range=3344,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48550;partial=true;pseudo=true;start_range=.,3243
NZ_APAH01000237.1	Protein Homology	CDS	3243	3344	.	-	0	ID=cds-CFSAN001082_RS48550;Parent=gene-CFSAN001082_RS48550;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=3344,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460948.1;locus_tag=CFSAN001082_RS48550;partial=true;product=DUF4113 domain-containing protein;pseudo=true;start_range=.,3243;transl_table=11
NZ_APAH01000237.1	RefSeq	gene	3378	5738	.	-	.	ID=gene-CFSAN001082_RS0123530;Name=sspH3;gbkey=Gene;gene=sspH3;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123530;old_locus_tag=CFSAN001082_11934
NZ_APAH01000237.1	Protein Homology	CDS	3378	5738	.	-	0	ID=cds-WP_024150292.1;Parent=gene-CFSAN001082_RS0123530;Dbxref=GenBank:WP_024150292.1;Name=WP_024150292.1;gbkey=CDS;gene=sspH3;inference=COORDINATES: similar to AA sequence:RefSeq:WP_052938253.1;locus_tag=CFSAN001082_RS0123530;product=type III secretion system effector SspH3;protein_id=WP_024150292.1;transl_table=11
NZ_APAH01000237.1	RefSeq	pseudogene	6000	6345	.	+	.	ID=gene-CFSAN001082_RS35655;Name=CFSAN001082_RS35655;end_range=6345,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS35655;old_locus_tag=CFSAN001082_11944;partial=true;pseudo=true;start_range=.,6000
NZ_APAH01000237.1	Protein Homology	CDS	6000	6345	.	+	0	ID=cds-CFSAN001082_RS35655;Parent=gene-CFSAN001082_RS35655;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;end_range=6345,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017466154.1;locus_tag=CFSAN001082_RS35655;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;start_range=.,6000;transl_table=11
##sequence-region NZ_APAH01000238.1 1 7550
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000238.1	RefSeq	region	1	7550	.	+	.	ID=NZ_APAH01000238.1:1..7550;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000238.1	RefSeq	gene	476	2137	.	+	.	ID=gene-CFSAN001082_RS35660;Name=hilA;gbkey=Gene;gene=hilA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35660;old_locus_tag=CFSAN001082_11949
NZ_APAH01000238.1	Protein Homology	CDS	476	2137	.	+	0	ID=cds-WP_001120085.1;Parent=gene-CFSAN001082_RS35660;Dbxref=GenBank:WP_001120085.1;Name=WP_001120085.1;gbkey=CDS;gene=hilA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461797.1;locus_tag=CFSAN001082_RS35660;product=transcriptional regulator HilA;protein_id=WP_001120085.1;transl_table=11
NZ_APAH01000238.1	RefSeq	gene	2155	2637	.	+	.	ID=gene-CFSAN001082_RS35665;Name=iagB;gbkey=Gene;gene=iagB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35665;old_locus_tag=CFSAN001082_11954
NZ_APAH01000238.1	Protein Homology	CDS	2155	2637	.	+	0	ID=cds-WP_023231972.1;Parent=gene-CFSAN001082_RS35665;Dbxref=GenBank:WP_023231972.1;Name=WP_023231972.1;gbkey=CDS;gene=iagB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461798.1;locus_tag=CFSAN001082_RS35665;product=SPI-1 type III secretion system invasion protein IagB;protein_id=WP_023231972.1;transl_table=11
NZ_APAH01000238.1	RefSeq	gene	2691	4322	.	-	.	ID=gene-CFSAN001082_RS35670;Name=sptP;gbkey=Gene;gene=sptP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35670;old_locus_tag=CFSAN001082_11959
NZ_APAH01000238.1	Protein Homology	CDS	2691	4322	.	-	0	ID=cds-WP_023181879.1;Parent=gene-CFSAN001082_RS35670;Dbxref=GenBank:WP_023181879.1;Name=WP_023181879.1;gbkey=CDS;gene=sptP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461799.1;locus_tag=CFSAN001082_RS35670;product=SPI-1 type III secretion system effector GTPase-activating protein SptP;protein_id=WP_023181879.1;transl_table=11
NZ_APAH01000238.1	RefSeq	gene	4309	4701	.	-	.	ID=gene-CFSAN001082_RS35675;Name=sicP;gbkey=Gene;gene=sicP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35675;old_locus_tag=CFSAN001082_11964
NZ_APAH01000238.1	Protein Homology	CDS	4309	4701	.	-	0	ID=cds-WP_023254382.1;Parent=gene-CFSAN001082_RS35675;Dbxref=GenBank:WP_023254382.1;Name=WP_023254382.1;gbkey=CDS;gene=sicP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461800.1;locus_tag=CFSAN001082_RS35675;product=chaperone SicP;protein_id=WP_023254382.1;transl_table=11
NZ_APAH01000238.1	RefSeq	gene	4728	4988	.	-	.	ID=gene-CFSAN001082_RS35680;Name=CFSAN001082_RS35680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35680;old_locus_tag=CFSAN001082_11969
NZ_APAH01000238.1	Protein Homology	CDS	4728	4988	.	-	0	ID=cds-WP_000692252.1;Parent=gene-CFSAN001082_RS35680;Dbxref=GenBank:WP_000692252.1;Name=WP_000692252.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_449260.1;locus_tag=CFSAN001082_RS35680;product=hypothetical protein;protein_id=WP_000692252.1;transl_table=11
NZ_APAH01000238.1	RefSeq	gene	5032	5280	.	-	.	ID=gene-CFSAN001082_RS35685;Name=CFSAN001082_RS35685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35685;old_locus_tag=CFSAN001082_11974
NZ_APAH01000238.1	Protein Homology	CDS	5032	5280	.	-	0	ID=cds-WP_001055579.1;Parent=gene-CFSAN001082_RS35685;Dbxref=GenBank:WP_001055579.1;Name=WP_001055579.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461802.1;locus_tag=CFSAN001082_RS35685;product=acyl carrier protein;protein_id=WP_001055579.1;transl_table=11
NZ_APAH01000238.1	RefSeq	gene	5299	7356	.	-	.	ID=gene-CFSAN001082_RS35690;Name=sipA;gbkey=Gene;gene=sipA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35690;old_locus_tag=CFSAN001082_11979
NZ_APAH01000238.1	Protein Homology	CDS	5299	7356	.	-	0	ID=cds-WP_023254383.1;Parent=gene-CFSAN001082_RS35690;Dbxref=GenBank:WP_023254383.1;Name=WP_023254383.1;gbkey=CDS;gene=sipA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461803.1;locus_tag=CFSAN001082_RS35690;product=SPI-1 type III secretion system effector SipA;protein_id=WP_023254383.1;transl_table=11
NZ_APAH01000238.1	RefSeq	gene	7375	7550	.	-	.	ID=gene-CFSAN001082_RS35695;Name=CFSAN001082_RS35695;end_range=7550,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35695;old_locus_tag=CFSAN001082_11984;partial=true
NZ_APAH01000238.1	Protein Homology	CDS	7375	7550	.	-	2	ID=cds-WP_023254384.1;Parent=gene-CFSAN001082_RS35695;Dbxref=GenBank:WP_023254384.1;Name=WP_023254384.1;end_range=7550,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461804.1;locus_tag=CFSAN001082_RS35695;partial=true;product=IpaD/SipD/SspD family type III secretion system needle tip protein;protein_id=WP_023254384.1;transl_table=11
##sequence-region NZ_APAH01000239.1 1 1023
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000239.1	RefSeq	region	1	1023	.	+	.	ID=NZ_APAH01000239.1:1..1023;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000239.1	RefSeq	gene	1	773	.	-	.	ID=gene-CFSAN001082_RS35700;Name=CFSAN001082_RS35700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35700;old_locus_tag=CFSAN001082_11989;partial=true;start_range=.,1
NZ_APAH01000239.1	Protein Homology	CDS	1	773	.	-	0	ID=cds-WP_023254385.1;Parent=gene-CFSAN001082_RS35700;Dbxref=GenBank:WP_023254385.1;Name=WP_023254385.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001176774.1;locus_tag=CFSAN001082_RS35700;partial=true;product=hypothetical protein;protein_id=WP_023254385.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000240.1 1 406
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000240.1	RefSeq	region	1	406	.	+	.	ID=NZ_APAH01000240.1:1..406;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000240.1	RefSeq	gene	1	391	.	-	.	ID=gene-CFSAN001082_RS0123545;Name=CFSAN001082_RS0123545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123545;partial=true;start_range=.,1
NZ_APAH01000240.1	GeneMarkS-2+	CDS	1	391	.	-	0	ID=cds-WP_065311019.1;Parent=gene-CFSAN001082_RS0123545;Dbxref=GenBank:WP_065311019.1;Name=WP_065311019.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS0123545;partial=true;product=hypothetical protein;protein_id=WP_065311019.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000241.1 1 36086
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000241.1	RefSeq	region	1	36086	.	+	.	ID=NZ_APAH01000241.1:1..36086;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000241.1	RefSeq	gene	65	1285	.	+	.	ID=gene-CFSAN001082_RS35705;Name=arcA;gbkey=Gene;gene=arcA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35705;old_locus_tag=CFSAN001082_11994
NZ_APAH01000241.1	Protein Homology	CDS	65	1285	.	+	0	ID=cds-WP_000410846.1;Parent=gene-CFSAN001082_RS35705;Dbxref=GenBank:WP_000410846.1;Name=WP_000410846.1;Ontology_term=GO:0019546,GO:0016990;gbkey=CDS;gene=arcA;go_function=arginine deiminase activity|0016990||IEA;go_process=arginine deiminase pathway|0019546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463327.1;locus_tag=CFSAN001082_RS35705;product=arginine deiminase;protein_id=WP_000410846.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	1296	2228	.	+	.	ID=gene-CFSAN001082_RS35710;Name=arcC;gbkey=Gene;gene=arcC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35710;old_locus_tag=CFSAN001082_11999
NZ_APAH01000241.1	Protein Homology	CDS	1296	2228	.	+	0	ID=cds-WP_000428751.1;Parent=gene-CFSAN001082_RS35710;Dbxref=GenBank:WP_000428751.1;Name=WP_000428751.1;Ontology_term=GO:0006520,GO:0008804;gbkey=CDS;gene=arcC;go_function=carbamate kinase activity|0008804||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463326.1;locus_tag=CFSAN001082_RS35710;product=carbamate kinase;protein_id=WP_000428751.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	2340	3344	.	+	.	ID=gene-CFSAN001082_RS35715;Name=argF;gbkey=Gene;gene=argF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35715;old_locus_tag=CFSAN001082_12004
NZ_APAH01000241.1	Protein Homology	CDS	2340	3344	.	+	0	ID=cds-WP_000237031.1;Parent=gene-CFSAN001082_RS35715;Dbxref=GenBank:WP_000237031.1;Name=WP_000237031.1;Ontology_term=GO:0042450,GO:0004585;gbkey=CDS;gene=argF;go_function=ornithine carbamoyltransferase activity|0004585||IEA;go_process=arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463325.1;locus_tag=CFSAN001082_RS35715;product=ornithine carbamoyltransferase;protein_id=WP_000237031.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	3400	4803	.	+	.	ID=gene-CFSAN001082_RS35720;Name=CFSAN001082_RS35720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35720;old_locus_tag=CFSAN001082_12009
NZ_APAH01000241.1	Protein Homology	CDS	3400	4803	.	+	0	ID=cds-WP_000514424.1;Parent=gene-CFSAN001082_RS35720;Dbxref=GenBank:WP_000514424.1;Name=WP_000514424.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463324.1;locus_tag=CFSAN001082_RS35720;product=YfcC family protein;protein_id=WP_000514424.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	4990	5478	.	+	.	ID=gene-CFSAN001082_RS35725;Name=CFSAN001082_RS35725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35725;old_locus_tag=CFSAN001082_12019
NZ_APAH01000241.1	Protein Homology	CDS	4990	5478	.	+	0	ID=cds-WP_000666051.1;Parent=gene-CFSAN001082_RS35725;Dbxref=GenBank:WP_000666051.1;Name=WP_000666051.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463323.1;locus_tag=CFSAN001082_RS35725;product=arginine repressor;protein_id=WP_000666051.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	5448	5588	.	-	.	ID=gene-CFSAN001082_RS47870;Name=CFSAN001082_RS47870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47870
NZ_APAH01000241.1	Protein Homology	CDS	5448	5588	.	-	0	ID=cds-WP_001518160.1;Parent=gene-CFSAN001082_RS47870;Dbxref=GenBank:WP_001518160.1;Name=WP_001518160.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_453732.1;locus_tag=CFSAN001082_RS47870;product=hypothetical protein;protein_id=WP_001518160.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	5568	5669	.	+	.	ID=gene-CFSAN001082_RS35730;Name=pyrL;gbkey=Gene;gene=pyrL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35730;old_locus_tag=CFSAN001082_12024
NZ_APAH01000241.1	Protein Homology	CDS	5568	5669	.	+	0	ID=cds-WP_000249504.1;Parent=gene-CFSAN001082_RS35730;Dbxref=GenBank:WP_000249504.1;Name=WP_000249504.1;gbkey=CDS;gene=pyrL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313250.1;locus_tag=CFSAN001082_RS35730;product=pyr operon leader peptide;protein_id=WP_000249504.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	5705	6640	.	+	.	ID=gene-CFSAN001082_RS35735;Name=pyrB;gbkey=Gene;gene=pyrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35735;old_locus_tag=CFSAN001082_12029
NZ_APAH01000241.1	Protein Homology	CDS	5705	6640	.	+	0	ID=cds-WP_023254387.1;Parent=gene-CFSAN001082_RS35735;Dbxref=GenBank:WP_023254387.1;Name=WP_023254387.1;Ontology_term=GO:0006207,GO:0004070;gbkey=CDS;gene=pyrB;go_function=aspartate carbamoyltransferase activity|0004070||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463320.1;locus_tag=CFSAN001082_RS35735;product=aspartate carbamoyltransferase;protein_id=WP_023254387.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	6653	7114	.	+	.	ID=gene-CFSAN001082_RS35740;Name=pyrI;gbkey=Gene;gene=pyrI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35740;old_locus_tag=CFSAN001082_12034
NZ_APAH01000241.1	Protein Homology	CDS	6653	7114	.	+	0	ID=cds-WP_000148567.1;Parent=gene-CFSAN001082_RS35740;Dbxref=GenBank:WP_000148567.1;Name=WP_000148567.1;Ontology_term=GO:0006207,GO:0009347;gbkey=CDS;gene=pyrI;go_component=aspartate carbamoyltransferase complex|0009347||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000148566.1;locus_tag=CFSAN001082_RS35740;product=aspartate carbamoyltransferase regulatory subunit;protein_id=WP_000148567.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	7191	7577	.	+	.	ID=gene-CFSAN001082_RS35745;Name=ridA;gbkey=Gene;gene=ridA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35745;old_locus_tag=CFSAN001082_12039
NZ_APAH01000241.1	Protein Homology	CDS	7191	7577	.	+	0	ID=cds-WP_000047544.1;Parent=gene-CFSAN001082_RS35745;Dbxref=GenBank:WP_000047544.1;Name=WP_000047544.1;gbkey=CDS;gene=ridA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463318.1;locus_tag=CFSAN001082_RS35745;product=2-iminobutanoate/2-iminopropanoate deaminase;protein_id=WP_000047544.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	7652	8098	.	+	.	ID=gene-CFSAN001082_RS35750;Name=CFSAN001082_RS35750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35750;old_locus_tag=CFSAN001082_12044
NZ_APAH01000241.1	Protein Homology	CDS	7652	8098	.	+	0	ID=cds-WP_023254388.1;Parent=gene-CFSAN001082_RS35750;Dbxref=GenBank:WP_023254388.1;Name=WP_023254388.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463317.1;locus_tag=CFSAN001082_RS35750;product=transposase;protein_id=WP_023254388.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	8214	10922	.	-	.	ID=gene-CFSAN001082_RS35755;Name=mgtA;gbkey=Gene;gene=mgtA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35755;old_locus_tag=CFSAN001082_12049
NZ_APAH01000241.1	Protein Homology	CDS	8214	10922	.	-	0	ID=cds-WP_000920861.1;Parent=gene-CFSAN001082_RS35755;Dbxref=GenBank:WP_000920861.1;Name=WP_000920861.1;Ontology_term=GO:0015693,GO:0015444,GO:0016020;gbkey=CDS;gene=mgtA;go_component=membrane|0016020||IEA;go_function=P-type magnesium transporter activity|0015444||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463316.1;locus_tag=CFSAN001082_RS35755;product=magnesium-translocating P-type ATPase;protein_id=WP_000920861.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	11063	11161	.	-	.	ID=gene-CFSAN001082_RS49230;Name=mgtL;gbkey=Gene;gene=mgtL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49230
NZ_APAH01000241.1	Protein Homology	CDS	11063	11161	.	-	0	ID=cds-WP_105789234.1;Parent=gene-CFSAN001082_RS49230;Dbxref=GenBank:WP_105789234.1;Name=WP_105789234.1;gbkey=CDS;gene=mgtL;inference=COORDINATES: protein motif:HMM:NF028369.6;locus_tag=CFSAN001082_RS49230;product=mgtA regulatory leader peptide MgtL;protein_id=WP_105789234.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	11306	12253	.	+	.	ID=gene-CFSAN001082_RS35760;Name=treR;gbkey=Gene;gene=treR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35760;old_locus_tag=CFSAN001082_12054
NZ_APAH01000241.1	Protein Homology	CDS	11306	12253	.	+	0	ID=cds-WP_001181297.1;Parent=gene-CFSAN001082_RS35760;Dbxref=GenBank:WP_001181297.1;Name=WP_001181297.1;Ontology_term=GO:0005991,GO:0006355,GO:0045892,GO:0003677;gbkey=CDS;gene=treR;go_function=DNA binding|0003677||IEA;go_process=trehalose metabolic process|0005991||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463315.1;locus_tag=CFSAN001082_RS35760;product=trehalose operon repressor TreR;protein_id=WP_001181297.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	12391	13809	.	+	.	ID=gene-CFSAN001082_RS35765;Name=treB;gbkey=Gene;gene=treB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35765;old_locus_tag=CFSAN001082_12059
NZ_APAH01000241.1	Protein Homology	CDS	12391	13809	.	+	0	ID=cds-WP_023254389.1;Parent=gene-CFSAN001082_RS35765;Dbxref=GenBank:WP_023254389.1;Name=WP_023254389.1;Ontology_term=GO:0009401,GO:0015771,GO:0008982,GO:0015574,GO:0016020;gbkey=CDS;gene=treB;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,trehalose transmembrane transporter activity|0015574||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,trehalose transport|0015771||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005224799.1;locus_tag=CFSAN001082_RS35765;product=PTS trehalose transporter subunit IIBC;protein_id=WP_023254389.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	13859	15511	.	+	.	ID=gene-CFSAN001082_RS35770;Name=treC;gbkey=Gene;gene=treC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35770;old_locus_tag=CFSAN001082_12064
NZ_APAH01000241.1	Protein Homology	CDS	13859	15511	.	+	0	ID=cds-WP_000155038.1;Parent=gene-CFSAN001082_RS35770;Dbxref=GenBank:WP_000155038.1;Name=WP_000155038.1;Ontology_term=GO:0005991,GO:0008788,GO:0005737;gbkey=CDS;gene=treC;go_component=cytoplasm|0005737||IEA;go_function=alpha%2Calpha-phosphotrehalase activity|0008788||IEA;go_process=trehalose metabolic process|0005991||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463314.1;locus_tag=CFSAN001082_RS35770;product=alpha%2Calpha-phosphotrehalase;protein_id=WP_000155038.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	15920	18058	.	+	.	ID=gene-CFSAN001082_RS35780;Name=nrdD;gbkey=Gene;gene=nrdD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35780;old_locus_tag=CFSAN001082_12074
NZ_APAH01000241.1	Protein Homology	CDS	15920	18058	.	+	0	ID=cds-WP_000187818.1;Parent=gene-CFSAN001082_RS35780;Dbxref=GenBank:WP_000187818.1;Name=WP_000187818.1;Ontology_term=GO:0006260,GO:0008998;gbkey=CDS;gene=nrdD;go_function=ribonucleoside-triphosphate reductase (thioredoxin) activity|0008998||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463313.1;locus_tag=CFSAN001082_RS35780;product=anaerobic ribonucleoside-triphosphate reductase;protein_id=WP_000187818.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	18275	18739	.	+	.	ID=gene-CFSAN001082_RS35785;Name=nrdG;gbkey=Gene;gene=nrdG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35785;old_locus_tag=CFSAN001082_12079
NZ_APAH01000241.1	Protein Homology	CDS	18275	18739	.	+	0	ID=cds-WP_017441190.1;Parent=gene-CFSAN001082_RS35785;Dbxref=GenBank:WP_017441190.1;Name=WP_017441190.1;Ontology_term=GO:0043365,GO:0051539;gbkey=CDS;gene=nrdG;go_function=[formate-C-acetyltransferase]-activating enzyme activity|0043365||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463312.1;locus_tag=CFSAN001082_RS35785;product=anaerobic ribonucleoside-triphosphate reductase-activating protein;protein_id=WP_017441190.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	18743	19027	.	-	.	ID=gene-CFSAN001082_RS35790;Name=CFSAN001082_RS35790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35790;old_locus_tag=CFSAN001082_12084
NZ_APAH01000241.1	Protein Homology	CDS	18743	19027	.	-	0	ID=cds-WP_000220577.1;Parent=gene-CFSAN001082_RS35790;Dbxref=GenBank:WP_000220577.1;Name=WP_000220577.1;Ontology_term=GO:0017148,GO:0004521,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=RNA endonuclease activity|0004521||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463311.1;locus_tag=CFSAN001082_RS35790;product=type II toxin-antitoxin system RelE family toxin;protein_id=WP_000220577.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	19017	19259	.	-	.	ID=gene-CFSAN001082_RS35795;Name=CFSAN001082_RS35795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35795;old_locus_tag=CFSAN001082_12089
NZ_APAH01000241.1	Protein Homology	CDS	19017	19259	.	-	0	ID=cds-WP_000212724.1;Parent=gene-CFSAN001082_RS35795;Dbxref=GenBank:WP_000212724.1;Name=WP_000212724.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463310.1;locus_tag=CFSAN001082_RS35795;product=type II toxin-antitoxin system RelB/DinJ family antitoxin;protein_id=WP_000212724.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	19337	21250	.	-	.	ID=gene-CFSAN001082_RS35800;Name=CFSAN001082_RS35800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35800;old_locus_tag=CFSAN001082_12094
NZ_APAH01000241.1	Protein Homology	CDS	19337	21250	.	-	0	ID=cds-WP_001212135.1;Parent=gene-CFSAN001082_RS35800;Dbxref=GenBank:WP_001212135.1;Name=WP_001212135.1;Ontology_term=GO:0006355,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463309.1;locus_tag=CFSAN001082_RS35800;product=BglG family transcription antiterminator;protein_id=WP_001212135.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	21267	22007	.	-	.	ID=gene-CFSAN001082_RS35805;Name=dagF;gbkey=Gene;gene=dagF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35805;old_locus_tag=CFSAN001082_12099
NZ_APAH01000241.1	Protein Homology	CDS	21267	22007	.	-	0	ID=cds-WP_000779267.1;Parent=gene-CFSAN001082_RS35805;Dbxref=GenBank:WP_000779267.1;Name=WP_000779267.1;Ontology_term=GO:0008675;gbkey=CDS;gene=dagF;go_function=2-dehydro-3-deoxy-phosphogluconate aldolase activity|0008675||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463308.2;locus_tag=CFSAN001082_RS35805;product=2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_000779267.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	22004	23122	.	-	.	ID=gene-CFSAN001082_RS35810;Name=CFSAN001082_RS35810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35810;old_locus_tag=CFSAN001082_12104
NZ_APAH01000241.1	Protein Homology	CDS	22004	23122	.	-	0	ID=cds-WP_001139178.1;Parent=gene-CFSAN001082_RS35810;Dbxref=GenBank:WP_001139178.1;Name=WP_001139178.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463307.1;locus_tag=CFSAN001082_RS35810;product=DgaE family pyridoxal phosphate-dependent ammonia lyase;protein_id=WP_001139178.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	23106	24239	.	-	.	ID=gene-CFSAN001082_RS35815;Name=CFSAN001082_RS35815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35815;old_locus_tag=CFSAN001082_12109
NZ_APAH01000241.1	Protein Homology	CDS	23106	24239	.	-	0	ID=cds-WP_023254390.1;Parent=gene-CFSAN001082_RS35815;Dbxref=GenBank:WP_023254390.1;Name=WP_023254390.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463306.1;locus_tag=CFSAN001082_RS35815;product=amidohydrolase/deacetylase family metallohydrolase;protein_id=WP_023254390.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	24298	24942	.	-	.	ID=gene-CFSAN001082_RS35820;Name=CFSAN001082_RS35820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35820;old_locus_tag=CFSAN001082_12114
NZ_APAH01000241.1	Protein Homology	CDS	24298	24942	.	-	0	ID=cds-WP_000392127.1;Parent=gene-CFSAN001082_RS35820;Dbxref=GenBank:WP_000392127.1;Name=WP_000392127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463305.1;locus_tag=CFSAN001082_RS35820;product=DUF4310 family protein;protein_id=WP_000392127.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	24954	25730	.	-	.	ID=gene-CFSAN001082_RS35825;Name=CFSAN001082_RS35825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35825;old_locus_tag=CFSAN001082_12119
NZ_APAH01000241.1	Protein Homology	CDS	24954	25730	.	-	0	ID=cds-WP_000478578.1;Parent=gene-CFSAN001082_RS35825;Dbxref=GenBank:WP_000478578.1;Name=WP_000478578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463304.1;locus_tag=CFSAN001082_RS35825;product=DUF4311 domain-containing protein;protein_id=WP_000478578.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	25753	26055	.	-	.	ID=gene-CFSAN001082_RS35830;Name=CFSAN001082_RS35830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35830;old_locus_tag=CFSAN001082_12124
NZ_APAH01000241.1	Protein Homology	CDS	25753	26055	.	-	0	ID=cds-WP_000975187.1;Parent=gene-CFSAN001082_RS35830;Dbxref=GenBank:WP_000975187.1;Name=WP_000975187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463303.1;locus_tag=CFSAN001082_RS35830;product=DUF4312 family protein;protein_id=WP_000975187.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	26055	26417	.	-	.	ID=gene-CFSAN001082_RS35835;Name=CFSAN001082_RS35835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35835;old_locus_tag=CFSAN001082_12129
NZ_APAH01000241.1	Protein Homology	CDS	26055	26417	.	-	0	ID=cds-WP_000435389.1;Parent=gene-CFSAN001082_RS35835;Dbxref=GenBank:WP_000435389.1;Name=WP_000435389.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463302.1;locus_tag=CFSAN001082_RS35835;product=SFCGS family glycine-rich protein;protein_id=WP_000435389.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	26428	26766	.	-	.	ID=gene-CFSAN001082_RS35840;Name=CFSAN001082_RS35840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35840;old_locus_tag=CFSAN001082_12134
NZ_APAH01000241.1	Protein Homology	CDS	26428	26766	.	-	0	ID=cds-WP_001255103.1;Parent=gene-CFSAN001082_RS35840;Dbxref=GenBank:WP_001255103.1;Name=WP_001255103.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463301.1;locus_tag=CFSAN001082_RS35840;product=glycine dehydrogenase;protein_id=WP_001255103.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	27044	27430	.	-	.	ID=gene-CFSAN001082_RS35845;Name=cybC;gbkey=Gene;gene=cybC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35845;old_locus_tag=CFSAN001082_12139
NZ_APAH01000241.1	Protein Homology	CDS	27044	27430	.	-	0	ID=cds-WP_001232231.1;Parent=gene-CFSAN001082_RS35845;Dbxref=GenBank:WP_001232231.1;Name=WP_001232231.1;Ontology_term=GO:0022900,GO:0005506,GO:0009055,GO:0042597;gbkey=CDS;gene=cybC;go_component=periplasmic space|0042597||IEA;go_function=iron ion binding|0005506||IEA,electron transfer activity|0009055||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463300.1;locus_tag=CFSAN001082_RS35845;product=cytochrome b562;protein_id=WP_001232231.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	27529	28881	.	-	.	ID=gene-CFSAN001082_RS35850;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35850;old_locus_tag=CFSAN001082_12144
NZ_APAH01000241.1	Protein Homology	CDS	27529	28881	.	-	0	ID=cds-WP_000852994.1;Parent=gene-CFSAN001082_RS35850;Dbxref=GenBank:WP_000852994.1;Name=WP_000852994.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=pmbA;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463299.1;locus_tag=CFSAN001082_RS35850;product=metalloprotease PmbA;protein_id=WP_000852994.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	28977	29528	.	+	.	ID=gene-CFSAN001082_RS35855;Name=yjgA;gbkey=Gene;gene=yjgA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35855;old_locus_tag=CFSAN001082_12149
NZ_APAH01000241.1	Protein Homology	CDS	28977	29528	.	+	0	ID=cds-WP_000166287.1;Parent=gene-CFSAN001082_RS35855;Dbxref=GenBank:WP_000166287.1;Name=WP_000166287.1;Ontology_term=GO:0042254;gbkey=CDS;gene=yjgA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463298.1;locus_tag=CFSAN001082_RS35855;product=ribosome biogenesis factor YjgA;protein_id=WP_000166287.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	29584	30468	.	-	.	ID=gene-CFSAN001082_RS35860;Name=iolH;gbkey=Gene;gene=iolH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35860;old_locus_tag=CFSAN001082_12154
NZ_APAH01000241.1	Protein Homology	CDS	29584	30468	.	-	0	ID=cds-WP_023224153.1;Parent=gene-CFSAN001082_RS35860;Dbxref=GenBank:WP_023224153.1;Name=WP_023224153.1;gbkey=CDS;gene=iolH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463297.1;locus_tag=CFSAN001082_RS35860;product=sugar phosphate isomerase/epimerase IolH;protein_id=WP_023224153.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	30521	31336	.	-	.	ID=gene-CFSAN001082_RS35865;Name=iolI2;gbkey=Gene;gene=iolI2;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35865;old_locus_tag=CFSAN001082_12159
NZ_APAH01000241.1	Protein Homology	CDS	30521	31336	.	-	0	ID=cds-WP_001019386.1;Parent=gene-CFSAN001082_RS35865;Dbxref=GenBank:WP_001019386.1;Name=WP_001019386.1;gbkey=CDS;gene=iolI2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463296.1;locus_tag=CFSAN001082_RS35865;product=2-keto-myo-inositol isomerase IolI2;protein_id=WP_001019386.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	31497	32723	.	-	.	ID=gene-CFSAN001082_RS35870;Name=CFSAN001082_RS35870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35870;old_locus_tag=CFSAN001082_12164
NZ_APAH01000241.1	Protein Homology	CDS	31497	32723	.	-	0	ID=cds-WP_000661780.1;Parent=gene-CFSAN001082_RS35870;Dbxref=GenBank:WP_000661780.1;Name=WP_000661780.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463295.1;locus_tag=CFSAN001082_RS35870;product=MFS transporter;protein_id=WP_000661780.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	32796	33818	.	-	.	ID=gene-CFSAN001082_RS35875;Name=iolG2;gbkey=Gene;gene=iolG2;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35875;old_locus_tag=CFSAN001082_12169
NZ_APAH01000241.1	Protein Homology	CDS	32796	33818	.	-	0	ID=cds-WP_024150293.1;Parent=gene-CFSAN001082_RS35875;Dbxref=GenBank:WP_024150293.1;Name=WP_024150293.1;gbkey=CDS;gene=iolG2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463294.1;locus_tag=CFSAN001082_RS35875;product=D-chiro-inositol-2-dehydrogenase IolG2;protein_id=WP_024150293.1;transl_table=11
NZ_APAH01000241.1	RefSeq	gene	33999	35939	.	-	.	ID=gene-CFSAN001082_RS35880;Name=iolD;gbkey=Gene;gene=iolD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35880;old_locus_tag=CFSAN001082_12174
NZ_APAH01000241.1	Protein Homology	CDS	33999	35939	.	-	0	ID=cds-WP_000849472.1;Parent=gene-CFSAN001082_RS35880;Dbxref=GenBank:WP_000849472.1;Name=WP_000849472.1;Ontology_term=GO:0019310,GO:0016823,GO:0030976;gbkey=CDS;gene=iolD;go_function=hydrolase activity%2C acting on acid carbon-carbon bonds%2C in ketonic substances|0016823||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=inositol catabolic process|0019310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_453702.1;locus_tag=CFSAN001082_RS35880;product=3D-(3%2C5/4)-trihydroxycyclohexane-1%2C2-dione acylhydrolase (decyclizing);protein_id=WP_000849472.1;transl_table=11
##sequence-region NZ_APAH01000242.1 1 27892
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000242.1	RefSeq	region	1	27892	.	+	.	ID=NZ_APAH01000242.1:1..27892;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000242.1	RefSeq	pseudogene	1	155	.	-	.	ID=gene-CFSAN001082_RS46300;Name=prpB;gbkey=Gene;gene=prpB;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46300;old_locus_tag=CFSAN001082_12179;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000242.1	Protein Homology	CDS	1	155	.	-	0	ID=cds-CFSAN001082_RS46300;Parent=gene-CFSAN001082_RS46300;Note=catalyzes the formation of pyruvate and succinate from 2-methylisocitrate%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=prpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459363.1;locus_tag=CFSAN001082_RS46300;partial=true;product=methylisocitrate lyase;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	421	2046	.	+	.	ID=gene-CFSAN001082_RS35885;Name=prpR;gbkey=Gene;gene=prpR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35885;old_locus_tag=CFSAN001082_12184
NZ_APAH01000242.1	Protein Homology	CDS	421	2046	.	+	0	ID=cds-WP_023254393.1;Parent=gene-CFSAN001082_RS35885;Dbxref=GenBank:WP_023254393.1;Name=WP_023254393.1;gbkey=CDS;gene=prpR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459362.1;locus_tag=CFSAN001082_RS35885;product=propionate catabolism operon regulatory protein PrpR;protein_id=WP_023254393.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	2182	2457	.	-	.	ID=gene-CFSAN001082_RS35890;Name=yahO;gbkey=Gene;gene=yahO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35890;old_locus_tag=CFSAN001082_12189
NZ_APAH01000242.1	Protein Homology	CDS	2182	2457	.	-	0	ID=cds-WP_000848026.1;Parent=gene-CFSAN001082_RS35890;Dbxref=GenBank:WP_000848026.1;Name=WP_000848026.1;gbkey=CDS;gene=yahO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459361.1;locus_tag=CFSAN001082_RS35890;product=DUF1471 family periplasmic protein YahO;protein_id=WP_000848026.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	2689	3321	.	+	.	ID=gene-CFSAN001082_RS35895;Name=CFSAN001082_RS35895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35895;old_locus_tag=CFSAN001082_12194
NZ_APAH01000242.1	Protein Homology	CDS	2689	3321	.	+	0	ID=cds-WP_000433131.1;Parent=gene-CFSAN001082_RS35895;Dbxref=GenBank:WP_000433131.1;Name=WP_000433131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459360.1;locus_tag=CFSAN001082_RS35895;product=LysE family transporter;protein_id=WP_000433131.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	3362	5470	.	-	.	ID=gene-CFSAN001082_RS35900;Name=foxA;gbkey=Gene;gene=foxA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35900;old_locus_tag=CFSAN001082_12199
NZ_APAH01000242.1	Protein Homology	CDS	3362	5470	.	-	0	ID=cds-WP_139759103.1;Parent=gene-CFSAN001082_RS35900;Dbxref=GenBank:WP_139759103.1;Name=WP_139759103.1;Ontology_term=GO:0015344,GO:0038023;gbkey=CDS;gene=foxA;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA,signaling receptor activity|0038023||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459359.1;locus_tag=CFSAN001082_RS35900;product=ferrioxamine B receptor FoxA;protein_id=WP_139759103.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	5616	6620	.	-	.	ID=gene-CFSAN001082_RS35905;Name=foxR;gbkey=Gene;gene=foxR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35905;old_locus_tag=CFSAN001082_12204
NZ_APAH01000242.1	Protein Homology	CDS	5616	6620	.	-	0	ID=cds-WP_000074605.1;Parent=gene-CFSAN001082_RS35905;Dbxref=GenBank:WP_000074605.1;Name=WP_000074605.1;gbkey=CDS;gene=foxR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459358.1;locus_tag=CFSAN001082_RS35905;product=ferrioxamine uptake transcriptional regulator FoxR;protein_id=WP_000074605.1;transl_table=11
NZ_APAH01000242.1	RefSeq	pseudogene	6716	6908	.	-	.	ID=gene-CFSAN001082_RS48895;Name=CFSAN001082_RS48895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48895;pseudo=true
NZ_APAH01000242.1	Protein Homology	CDS	6716	6908	.	-	0	ID=cds-CFSAN001082_RS48895;Parent=gene-CFSAN001082_RS48895;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459357.3;locus_tag=CFSAN001082_RS48895;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	6827	7012	.	-	.	ID=gene-CFSAN001082_RS49125;Name=CFSAN001082_RS49125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49125;old_locus_tag=CFSAN001082_12209
NZ_APAH01000242.1	Protein Homology	CDS	6827	7012	.	-	0	ID=cds-WP_305954967.1;Parent=gene-CFSAN001082_RS49125;Dbxref=GenBank:WP_305954967.1;Name=WP_305954967.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022085.6;locus_tag=CFSAN001082_RS49125;product=DUF2474 domain-containing protein;protein_id=WP_305954967.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	6958	7968	.	-	.	ID=gene-CFSAN001082_RS35915;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35915;old_locus_tag=CFSAN001082_12214
NZ_APAH01000242.1	Protein Homology	CDS	6958	7968	.	-	0	ID=cds-WP_023254395.1;Parent=gene-CFSAN001082_RS35915;Dbxref=GenBank:WP_023254395.1;Name=WP_023254395.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydB;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459356.1;locus_tag=CFSAN001082_RS35915;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_023254395.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	7965	9368	.	-	.	ID=gene-CFSAN001082_RS35920;Name=CFSAN001082_RS35920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35920;old_locus_tag=CFSAN001082_12219
NZ_APAH01000242.1	Protein Homology	CDS	7965	9368	.	-	0	ID=cds-WP_000393711.1;Parent=gene-CFSAN001082_RS35920;Dbxref=GenBank:WP_000393711.1;Name=WP_000393711.1;Ontology_term=GO:0009055,GO:0046872,GO:0016020,GO:0070069;gbkey=CDS;go_component=membrane|0016020||IEA,cytochrome complex|0070069||IEA;go_function=electron transfer activity|0009055||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459355.1;locus_tag=CFSAN001082_RS35920;product=cytochrome ubiquinol oxidase subunit I;protein_id=WP_000393711.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	9485	9586	.	-	.	ID=gene-CFSAN001082_RS0123550;Name=ssaA;gbkey=Gene;gene=ssaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123550
NZ_APAH01000242.1	Protein Homology	CDS	9485	9586	.	-	0	ID=cds-WP_000934834.1;Parent=gene-CFSAN001082_RS0123550;Dbxref=GenBank:WP_000934834.1;Name=WP_000934834.1;gbkey=CDS;gene=ssaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459354.1;locus_tag=CFSAN001082_RS0123550;product=small effector SsaA;protein_id=WP_000934834.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	9863	12835	.	-	.	ID=gene-CFSAN001082_RS35925;Name=CFSAN001082_RS35925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35925;old_locus_tag=CFSAN001082_12224
NZ_APAH01000242.1	Protein Homology	CDS	9863	12835	.	-	0	ID=cds-WP_077684068.1;Parent=gene-CFSAN001082_RS35925;Dbxref=GenBank:WP_077684068.1;Name=WP_077684068.1;Ontology_term=GO:0003677,GO:0016788;gbkey=CDS;go_function=DNA binding|0003677||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459353.3;locus_tag=CFSAN001082_RS35925;product=type III restriction-modification system endonuclease;protein_id=WP_077684068.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	12845	14803	.	-	.	ID=gene-CFSAN001082_RS35930;Name=CFSAN001082_RS35930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35930;old_locus_tag=CFSAN001082_12229
NZ_APAH01000242.1	Protein Homology	CDS	12845	14803	.	-	0	ID=cds-WP_023254396.1;Parent=gene-CFSAN001082_RS35930;Dbxref=GenBank:WP_023254396.1;Name=WP_023254396.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459352.1;locus_tag=CFSAN001082_RS35930;product=site-specific DNA-methyltransferase;protein_id=WP_023254396.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	14992	16245	.	-	.	ID=gene-CFSAN001082_RS35935;Name=CFSAN001082_RS35935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35935;old_locus_tag=CFSAN001082_12234
NZ_APAH01000242.1	Protein Homology	CDS	14992	16245	.	-	0	ID=cds-WP_000288503.1;Parent=gene-CFSAN001082_RS35935;Dbxref=GenBank:WP_000288503.1;Name=WP_000288503.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459351.1;locus_tag=CFSAN001082_RS35935;product=MFS transporter;protein_id=WP_000288503.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	16537	16731	.	-	.	ID=gene-CFSAN001082_RS35940;Name=golB;gbkey=Gene;gene=golB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35940;old_locus_tag=CFSAN001082_12239
NZ_APAH01000242.1	Protein Homology	CDS	16537	16731	.	-	0	ID=cds-WP_001159470.1;Parent=gene-CFSAN001082_RS35940;Dbxref=GenBank:WP_001159470.1;Name=WP_001159470.1;gbkey=CDS;gene=golB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459350.1;locus_tag=CFSAN001082_RS35940;product=gold resistance metallochaperone GolB;protein_id=WP_001159470.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	16809	17273	.	-	.	ID=gene-CFSAN001082_RS35945;Name=golS;gbkey=Gene;gene=golS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35945;old_locus_tag=CFSAN001082_12244
NZ_APAH01000242.1	Protein Homology	CDS	16809	17273	.	-	0	ID=cds-WP_001020584.1;Parent=gene-CFSAN001082_RS35945;Dbxref=GenBank:WP_001020584.1;Name=WP_001020584.1;gbkey=CDS;gene=golS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459349.1;locus_tag=CFSAN001082_RS35945;product=Au(I) sensor transcriptional regulator GolS;protein_id=WP_001020584.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	17285	19573	.	-	.	ID=gene-CFSAN001082_RS35950;Name=golT;gbkey=Gene;gene=golT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35950;old_locus_tag=CFSAN001082_12249
NZ_APAH01000242.1	Protein Homology	CDS	17285	19573	.	-	0	ID=cds-WP_000083304.1;Parent=gene-CFSAN001082_RS35950;Dbxref=GenBank:WP_000083304.1;Name=WP_000083304.1;gbkey=CDS;gene=golT;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000083318.1;locus_tag=CFSAN001082_RS35950;product=gold/copper-translocating P-type ATPase GolT;protein_id=WP_000083304.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	19850	21076	.	+	.	ID=gene-CFSAN001082_RS35955;Name=mdsA;gbkey=Gene;gene=mdsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35955;old_locus_tag=CFSAN001082_12254
NZ_APAH01000242.1	Protein Homology	CDS	19850	21076	.	+	0	ID=cds-WP_023182355.1;Parent=gene-CFSAN001082_RS35955;Dbxref=GenBank:WP_023182355.1;Name=WP_023182355.1;gbkey=CDS;gene=mdsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459347.3;locus_tag=CFSAN001082_RS35955;product=multidrug efflux RND transporter periplasmic adaptor subunit MdsA;protein_id=WP_023182355.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	21073	24240	.	+	.	ID=gene-CFSAN001082_RS35960;Name=mdsB;gbkey=Gene;gene=mdsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35960;old_locus_tag=CFSAN001082_12259
NZ_APAH01000242.1	Protein Homology	CDS	21073	24240	.	+	0	ID=cds-WP_023254397.1;Parent=gene-CFSAN001082_RS35960;Dbxref=GenBank:WP_023254397.1;Name=WP_023254397.1;gbkey=CDS;gene=mdsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459346.1;locus_tag=CFSAN001082_RS35960;product=multidrug efflux RND transporter permease subunit MdsB;protein_id=WP_023254397.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	24257	25714	.	+	.	ID=gene-CFSAN001082_RS35965;Name=mdsC;gbkey=Gene;gene=mdsC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35965;old_locus_tag=CFSAN001082_12264
NZ_APAH01000242.1	Protein Homology	CDS	24257	25714	.	+	0	ID=cds-WP_023254398.1;Parent=gene-CFSAN001082_RS35965;Dbxref=GenBank:WP_023254398.1;Name=WP_023254398.1;gbkey=CDS;gene=mdsC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001521068.1;locus_tag=CFSAN001082_RS35965;product=multidrug efflux transporter outer membrane subunit MdsC;protein_id=WP_023254398.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	25784	26143	.	-	.	ID=gene-CFSAN001082_RS35970;Name=CFSAN001082_RS35970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35970;old_locus_tag=CFSAN001082_12269
NZ_APAH01000242.1	Protein Homology	CDS	25784	26143	.	-	0	ID=cds-WP_000722978.1;Parent=gene-CFSAN001082_RS35970;Dbxref=GenBank:WP_000722978.1;Name=WP_000722978.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459344.1;locus_tag=CFSAN001082_RS35970;product=DUF4156 domain-containing protein;protein_id=WP_000722978.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	26201	26425	.	-	.	ID=gene-CFSAN001082_RS35975;Name=CFSAN001082_RS35975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35975;old_locus_tag=CFSAN001082_12274
NZ_APAH01000242.1	Protein Homology	CDS	26201	26425	.	-	0	ID=cds-WP_000737124.1;Parent=gene-CFSAN001082_RS35975;Dbxref=GenBank:WP_000737124.1;Name=WP_000737124.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459343.1;locus_tag=CFSAN001082_RS35975;product=membrane protein;protein_id=WP_000737124.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	26436	27077	.	-	.	ID=gene-CFSAN001082_RS35980;Name=CFSAN001082_RS35980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35980;old_locus_tag=CFSAN001082_12279
NZ_APAH01000242.1	Protein Homology	CDS	26436	27077	.	-	0	ID=cds-WP_000610827.1;Parent=gene-CFSAN001082_RS35980;Dbxref=GenBank:WP_000610827.1;Name=WP_000610827.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459342.1;locus_tag=CFSAN001082_RS35980;product=helix-turn-helix transcriptional regulator;protein_id=WP_000610827.1;transl_table=11
NZ_APAH01000242.1	RefSeq	gene	27221	27745	.	-	.	ID=gene-CFSAN001082_RS35985;Name=CFSAN001082_RS35985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS35985;old_locus_tag=CFSAN001082_12284
NZ_APAH01000242.1	Protein Homology	CDS	27221	27745	.	-	0	ID=cds-WP_000830237.1;Parent=gene-CFSAN001082_RS35985;Dbxref=GenBank:WP_000830237.1;Name=WP_000830237.1;Ontology_term=GO:0044384;gbkey=CDS;go_component=host outer membrane|0044384||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459341.1;locus_tag=CFSAN001082_RS35985;product=Ail/Lom family outer membrane beta-barrel protein;protein_id=WP_000830237.1;transl_table=11
##sequence-region NZ_APAH01000243.1 1 2815
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000243.1	RefSeq	region	1	2815	.	+	.	ID=NZ_APAH01000243.1:1..2815;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000243.1	RefSeq	gene	1	2435	.	+	.	ID=gene-CFSAN001082_RS35990;Name=CFSAN001082_RS35990;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS35990;old_locus_tag=CFSAN001082_r12293;partial=true;start_range=.,1
NZ_APAH01000243.1	cmsearch	rRNA	1	2435	.	+	.	ID=rna-CFSAN001082_RS35990;Parent=gene-CFSAN001082_RS35990;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS35990;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_APAH01000243.1	cmsearch	exon	1	2435	.	+	.	ID=exon-CFSAN001082_RS35990-1;Parent=rna-CFSAN001082_RS35990;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS35990;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_APAH01000243.1	RefSeq	gene	2632	2747	.	+	.	ID=gene-CFSAN001082_RS35995;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=CFSAN001082_RS35995;old_locus_tag=CFSAN001082_r12291
NZ_APAH01000243.1	cmsearch	rRNA	2632	2747	.	+	.	ID=rna-CFSAN001082_RS35995;Parent=gene-CFSAN001082_RS35995;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS35995;product=5S ribosomal RNA
NZ_APAH01000243.1	cmsearch	exon	2632	2747	.	+	.	ID=exon-CFSAN001082_RS35995-1;Parent=rna-CFSAN001082_RS35995;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS35995;product=5S ribosomal RNA
##sequence-region NZ_APAH01000244.1 1 1689
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000244.1	RefSeq	region	1	1689	.	+	.	ID=NZ_APAH01000244.1:1..1689;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000244.1	RefSeq	gene	1	563	.	-	.	ID=gene-CFSAN001082_RS36000;Name=CFSAN001082_RS36000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36000;old_locus_tag=CFSAN001082_12293;partial=true;start_range=.,1
NZ_APAH01000244.1	Protein Homology	CDS	1	563	.	-	0	ID=cds-WP_023254399.1;Parent=gene-CFSAN001082_RS36000;Dbxref=GenBank:WP_023254399.1;Name=WP_023254399.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460593.1;locus_tag=CFSAN001082_RS36000;partial=true;product=amino acid ABC transporter permease;protein_id=WP_023254399.1;start_range=.,1;transl_table=11
NZ_APAH01000244.1	RefSeq	gene	570	1331	.	-	.	ID=gene-CFSAN001082_RS36005;Name=CFSAN001082_RS36005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36005;old_locus_tag=CFSAN001082_12298
NZ_APAH01000244.1	Protein Homology	CDS	570	1331	.	-	0	ID=cds-WP_023254400.1;Parent=gene-CFSAN001082_RS36005;Dbxref=GenBank:WP_023254400.1;Name=WP_023254400.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460592.1;locus_tag=CFSAN001082_RS36005;product=transporter substrate-binding domain-containing protein;protein_id=WP_023254400.1;transl_table=11
##sequence-region NZ_APAH01000245.1 1 230
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000245.1	RefSeq	region	1	230	.	+	.	ID=NZ_APAH01000245.1:1..230;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000245.1	RefSeq	gene	1	230	.	-	.	ID=gene-CFSAN001082_RS36010;Name=CFSAN001082_RS36010;end_range=230,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36010;old_locus_tag=CFSAN001082_12303;partial=true;start_range=.,1
NZ_APAH01000245.1	Protein Homology	CDS	1	230	.	-	2	ID=cds-WP_023254401.1;Parent=gene-CFSAN001082_RS36010;Dbxref=GenBank:WP_023254401.1;Name=WP_023254401.1;Ontology_term=GO:0055085,GO:0022857;end_range=230,.;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461216.1;locus_tag=CFSAN001082_RS36010;partial=true;product=MFS transporter;protein_id=WP_023254401.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000246.1 1 3295
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000246.1	RefSeq	region	1	3295	.	+	.	ID=NZ_APAH01000246.1:1..3295;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000246.1	RefSeq	gene	1	1980	.	+	.	ID=gene-CFSAN001082_RS36015;Name=pgtB;gbkey=Gene;gene=pgtB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36015;old_locus_tag=CFSAN001082_12308;partial=true;start_range=.,1
NZ_APAH01000246.1	Protein Homology	CDS	1	1980	.	+	0	ID=cds-WP_023254402.1;Parent=gene-CFSAN001082_RS36015;Dbxref=GenBank:WP_023254402.1;Name=WP_023254402.1;Ontology_term=GO:0000160,GO:0000155,GO:0005524;gbkey=CDS;gene=pgtB;go_function=phosphorelay sensor kinase activity|0000155||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461338.1;locus_tag=CFSAN001082_RS36015;partial=true;product=two-component system sensor histidine kinase PgtB;protein_id=WP_023254402.1;start_range=.,1;transl_table=11
NZ_APAH01000246.1	RefSeq	gene	1970	3217	.	+	.	ID=gene-CFSAN001082_RS36020;Name=pgtA;gbkey=Gene;gene=pgtA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36020;old_locus_tag=CFSAN001082_12313
NZ_APAH01000246.1	Protein Homology	CDS	1970	3217	.	+	0	ID=cds-WP_017441410.1;Parent=gene-CFSAN001082_RS36020;Dbxref=GenBank:WP_017441410.1;Name=WP_017441410.1;Ontology_term=GO:0000160,GO:0006355,GO:0005524,GO:0043565;gbkey=CDS;gene=pgtA;go_function=ATP binding|0005524||IEA,sequence-specific DNA binding|0043565||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461337.1;locus_tag=CFSAN001082_RS36020;product=two-component system response regulator PgtA;protein_id=WP_017441410.1;transl_table=11
##sequence-region NZ_APAH01000247.1 1 16680
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000247.1	RefSeq	region	1	16680	.	+	.	ID=NZ_APAH01000247.1:1..16680;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000247.1	RefSeq	gene	98	547	.	-	.	ID=gene-CFSAN001082_RS36025;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36025;old_locus_tag=CFSAN001082_12318
NZ_APAH01000247.1	Protein Homology	CDS	98	547	.	-	0	ID=cds-WP_001196065.1;Parent=gene-CFSAN001082_RS36025;Dbxref=GenBank:WP_001196065.1;Name=WP_001196065.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134442.1;locus_tag=CFSAN001082_RS36025;product=50S ribosomal protein L9;protein_id=WP_001196065.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	589	816	.	-	.	ID=gene-CFSAN001082_RS36030;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36030;old_locus_tag=CFSAN001082_12323
NZ_APAH01000247.1	Protein Homology	CDS	589	816	.	-	0	ID=cds-WP_000135199.1;Parent=gene-CFSAN001082_RS36030;Dbxref=GenBank:WP_000135199.1;Name=WP_000135199.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsR;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012986941.1;locus_tag=CFSAN001082_RS36030;product=30S ribosomal protein S18;protein_id=WP_000135199.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	821	1135	.	-	.	ID=gene-CFSAN001082_RS36035;Name=priB;gbkey=Gene;gene=priB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36035;old_locus_tag=CFSAN001082_12328
NZ_APAH01000247.1	Protein Homology	CDS	821	1135	.	-	0	ID=cds-WP_001519453.1;Parent=gene-CFSAN001082_RS36035;Dbxref=GenBank:WP_001519453.1;Name=WP_001519453.1;Ontology_term=GO:0006260,GO:0003697,GO:0030894;gbkey=CDS;gene=priB;go_component=replisome|0030894||IEA;go_function=single-stranded DNA binding|0003697||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463253.1;locus_tag=CFSAN001082_RS36035;product=primosomal replication protein N;protein_id=WP_001519453.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	1142	1537	.	-	.	ID=gene-CFSAN001082_RS36040;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36040;old_locus_tag=CFSAN001082_12333
NZ_APAH01000247.1	Protein Homology	CDS	1142	1537	.	-	0	ID=cds-WP_001216673.1;Parent=gene-CFSAN001082_RS36040;Dbxref=GenBank:WP_001216673.1;Name=WP_001216673.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsF;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020456251.1;locus_tag=CFSAN001082_RS36040;product=30S ribosomal protein S6;protein_id=WP_001216673.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	1608	1814	.	-	.	ID=gene-CFSAN001082_RS0123565;Name=CFSAN001082_RS0123565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123565
NZ_APAH01000247.1	Protein Homology	CDS	1608	1814	.	-	0	ID=cds-WP_024149235.1;Parent=gene-CFSAN001082_RS0123565;Dbxref=GenBank:WP_024149235.1;Name=WP_024149235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463251.1;locus_tag=CFSAN001082_RS0123565;product=hypothetical protein;protein_id=WP_024149235.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	2008	2283	.	+	.	ID=gene-CFSAN001082_RS36045;Name=yjfY;gbkey=Gene;gene=yjfY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36045;old_locus_tag=CFSAN001082_12338
NZ_APAH01000247.1	Protein Homology	CDS	2008	2283	.	+	0	ID=cds-WP_023254403.1;Parent=gene-CFSAN001082_RS36045;Dbxref=GenBank:WP_023254403.1;Name=WP_023254403.1;gbkey=CDS;gene=yjfY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463250.1;locus_tag=CFSAN001082_RS36045;product=DUF1471 family protein YjfY;protein_id=WP_023254403.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	2412	3098	.	-	.	ID=gene-CFSAN001082_RS36050;Name=CFSAN001082_RS36050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36050;old_locus_tag=CFSAN001082_12343
NZ_APAH01000247.1	Protein Homology	CDS	2412	3098	.	-	0	ID=cds-WP_001170771.1;Parent=gene-CFSAN001082_RS36050;Dbxref=GenBank:WP_001170771.1;Name=WP_001170771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463249.1;locus_tag=CFSAN001082_RS36050;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_001170771.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	3098	3952	.	-	.	ID=gene-CFSAN001082_RS36055;Name=ulaE;gbkey=Gene;gene=ulaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36055;old_locus_tag=CFSAN001082_12348
NZ_APAH01000247.1	Protein Homology	CDS	3098	3952	.	-	0	ID=cds-WP_000949530.1;Parent=gene-CFSAN001082_RS36055;Dbxref=GenBank:WP_000949530.1;Name=WP_000949530.1;gbkey=CDS;gene=ulaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463248.1;locus_tag=CFSAN001082_RS36055;product=L-ribulose-5-phosphate 3-epimerase UlaE;protein_id=WP_000949530.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	3962	4612	.	-	.	ID=gene-CFSAN001082_RS36060;Name=ulaD;gbkey=Gene;gene=ulaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36060;old_locus_tag=CFSAN001082_12353
NZ_APAH01000247.1	Protein Homology	CDS	3962	4612	.	-	0	ID=cds-WP_000056761.1;Parent=gene-CFSAN001082_RS36060;Dbxref=GenBank:WP_000056761.1;Name=WP_000056761.1;gbkey=CDS;gene=ulaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463247.1;locus_tag=CFSAN001082_RS36060;product=3-keto-L-gulonate-6-phosphate decarboxylase UlaD;protein_id=WP_000056761.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	4626	5090	.	-	.	ID=gene-CFSAN001082_RS36065;Name=ulaC;gbkey=Gene;gene=ulaC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36065;old_locus_tag=CFSAN001082_12358
NZ_APAH01000247.1	Protein Homology	CDS	4626	5090	.	-	0	ID=cds-WP_000776531.1;Parent=gene-CFSAN001082_RS36065;Dbxref=GenBank:WP_000776531.1;Name=WP_000776531.1;gbkey=CDS;gene=ulaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463246.1;locus_tag=CFSAN001082_RS36065;product=PTS ascorbate transporter subunit IIA;protein_id=WP_000776531.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	5100	5405	.	-	.	ID=gene-CFSAN001082_RS36070;Name=ulaB;gbkey=Gene;gene=ulaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36070;old_locus_tag=CFSAN001082_12363
NZ_APAH01000247.1	Protein Homology	CDS	5100	5405	.	-	0	ID=cds-WP_000218358.1;Parent=gene-CFSAN001082_RS36070;Dbxref=GenBank:WP_000218358.1;Name=WP_000218358.1;gbkey=CDS;gene=ulaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463245.1;locus_tag=CFSAN001082_RS36070;product=PTS ascorbate transporter subunit IIB;protein_id=WP_000218358.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	5421	6818	.	-	.	ID=gene-CFSAN001082_RS36075;Name=ulaA;gbkey=Gene;gene=ulaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36075;old_locus_tag=CFSAN001082_12368
NZ_APAH01000247.1	Protein Homology	CDS	5421	6818	.	-	0	ID=cds-WP_000404873.1;Parent=gene-CFSAN001082_RS36075;Dbxref=GenBank:WP_000404873.1;Name=WP_000404873.1;gbkey=CDS;gene=ulaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418614.4;locus_tag=CFSAN001082_RS36075;product=PTS ascorbate transporter subunit IIC;protein_id=WP_000404873.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	7181	8245	.	+	.	ID=gene-CFSAN001082_RS36080;Name=ulaG;gbkey=Gene;gene=ulaG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36080;old_locus_tag=CFSAN001082_12373
NZ_APAH01000247.1	Protein Homology	CDS	7181	8245	.	+	0	ID=cds-WP_000049161.1;Parent=gene-CFSAN001082_RS36080;Dbxref=GenBank:WP_000049161.1;Name=WP_000049161.1;Ontology_term=GO:0019854,GO:0030145,GO:0035460;gbkey=CDS;gene=ulaG;go_function=manganese ion binding|0030145||IEA,L-ascorbate 6-phosphate lactonase activity|0035460||IEA;go_process=L-ascorbic acid catabolic process|0019854||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003856017.1;locus_tag=CFSAN001082_RS36080;product=L-ascorbate 6-phosphate lactonase;protein_id=WP_000049161.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	8350	9105	.	+	.	ID=gene-CFSAN001082_RS36085;Name=ulaR;gbkey=Gene;gene=ulaR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36085;old_locus_tag=CFSAN001082_12378
NZ_APAH01000247.1	Protein Homology	CDS	8350	9105	.	+	0	ID=cds-WP_000133618.1;Parent=gene-CFSAN001082_RS36085;Dbxref=GenBank:WP_000133618.1;Name=WP_000133618.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ulaR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463242.1;locus_tag=CFSAN001082_RS36085;product=HTH-type transcriptional regulator UlaR;protein_id=WP_000133618.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	9102	9851	.	-	.	ID=gene-CFSAN001082_RS36090;Name=yjfP;gbkey=Gene;gene=yjfP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36090;old_locus_tag=CFSAN001082_12383
NZ_APAH01000247.1	Protein Homology	CDS	9102	9851	.	-	0	ID=cds-WP_023254404.1;Parent=gene-CFSAN001082_RS36090;Dbxref=GenBank:WP_023254404.1;Name=WP_023254404.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;gene=yjfP;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463241.1;locus_tag=CFSAN001082_RS36090;product=esterase;protein_id=WP_023254404.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	10035	10364	.	+	.	ID=gene-CFSAN001082_RS36095;Name=bsmA;gbkey=Gene;gene=bsmA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36095;old_locus_tag=CFSAN001082_12388
NZ_APAH01000247.1	Protein Homology	CDS	10035	10364	.	+	0	ID=cds-WP_000586836.1;Parent=gene-CFSAN001082_RS36095;Dbxref=GenBank:WP_000586836.1;Name=WP_000586836.1;gbkey=CDS;gene=bsmA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463240.1;locus_tag=CFSAN001082_RS36095;product=biofilm peroxide resistance protein BsmA;protein_id=WP_000586836.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	10495	10770	.	+	.	ID=gene-CFSAN001082_RS36100;Name=yjfN;gbkey=Gene;gene=yjfN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36100;old_locus_tag=CFSAN001082_12393
NZ_APAH01000247.1	Protein Homology	CDS	10495	10770	.	+	0	ID=cds-WP_001518964.1;Parent=gene-CFSAN001082_RS36100;Dbxref=GenBank:WP_001518964.1;Name=WP_001518964.1;gbkey=CDS;gene=yjfN;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134428.1;locus_tag=CFSAN001082_RS36100;product=DUF1471 family protease activator YjfN;protein_id=WP_001518964.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	10815	12437	.	-	.	ID=gene-CFSAN001082_RS36105;Name=CFSAN001082_RS36105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36105;old_locus_tag=CFSAN001082_12398
NZ_APAH01000247.1	Protein Homology	CDS	10815	12437	.	-	0	ID=cds-WP_023254405.1;Parent=gene-CFSAN001082_RS36105;Dbxref=GenBank:WP_023254405.1;Name=WP_023254405.1;Ontology_term=GO:0003995;gbkey=CDS;go_function=acyl-CoA dehydrogenase activity|0003995||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463238.3;locus_tag=CFSAN001082_RS36105;product=isovaleryl-CoA dehydrogenase;protein_id=WP_023254405.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	12522	13685	.	-	.	ID=gene-CFSAN001082_RS36110;Name=CFSAN001082_RS36110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36110;old_locus_tag=CFSAN001082_12403
NZ_APAH01000247.1	Protein Homology	CDS	12522	13685	.	-	0	ID=cds-WP_000943948.1;Parent=gene-CFSAN001082_RS36110;Dbxref=GenBank:WP_000943948.1;Name=WP_000943948.1;Ontology_term=GO:0005524,GO:0016874,GO:0046872;gbkey=CDS;go_function=ATP binding|0005524||IEA,ligase activity|0016874||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463237.1;locus_tag=CFSAN001082_RS36110;product=glutathionylspermidine synthase family protein;protein_id=WP_000943948.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	13688	14326	.	-	.	ID=gene-CFSAN001082_RS36115;Name=CFSAN001082_RS36115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36115;old_locus_tag=CFSAN001082_12408
NZ_APAH01000247.1	Protein Homology	CDS	13688	14326	.	-	0	ID=cds-WP_001085591.1;Parent=gene-CFSAN001082_RS36115;Dbxref=GenBank:WP_001085591.1;Name=WP_001085591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463236.1;locus_tag=CFSAN001082_RS36115;product=DUF1190 domain-containing protein;protein_id=WP_001085591.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	14336	14734	.	-	.	ID=gene-CFSAN001082_RS36120;Name=CFSAN001082_RS36120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36120;old_locus_tag=CFSAN001082_12413
NZ_APAH01000247.1	Protein Homology	CDS	14336	14734	.	-	0	ID=cds-WP_000547738.1;Parent=gene-CFSAN001082_RS36120;Dbxref=GenBank:WP_000547738.1;Name=WP_000547738.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463235.1;locus_tag=CFSAN001082_RS36120;product=DUF350 domain-containing protein;protein_id=WP_000547738.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	14752	15435	.	-	.	ID=gene-CFSAN001082_RS36125;Name=CFSAN001082_RS36125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36125;old_locus_tag=CFSAN001082_12418
NZ_APAH01000247.1	Protein Homology	CDS	14752	15435	.	-	0	ID=cds-WP_000090293.1;Parent=gene-CFSAN001082_RS36125;Dbxref=GenBank:WP_000090293.1;Name=WP_000090293.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463234.3;locus_tag=CFSAN001082_RS36125;product=YjfK family protein;protein_id=WP_000090293.1;transl_table=11
NZ_APAH01000247.1	RefSeq	pseudogene	15558	15659	.	-	.	ID=gene-CFSAN001082_RS48900;Name=CFSAN001082_RS48900;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48900;old_locus_tag=CFSAN001082_12423;partial=true;pseudo=true;start_range=.,15558
NZ_APAH01000247.1	Protein Homology	CDS	15558	15659	.	-	0	ID=cds-CFSAN001082_RS48900;Parent=gene-CFSAN001082_RS48900;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463233.1;locus_tag=CFSAN001082_RS48900;partial=true;product=hypothetical protein;pseudo=true;start_range=.,15558;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	15659	16357	.	-	.	ID=gene-CFSAN001082_RS36130;Name=CFSAN001082_RS36130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36130;old_locus_tag=CFSAN001082_12428
NZ_APAH01000247.1	Protein Homology	CDS	15659	16357	.	-	0	ID=cds-WP_000511981.1;Parent=gene-CFSAN001082_RS36130;Dbxref=GenBank:WP_000511981.1;Name=WP_000511981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463232.1;locus_tag=CFSAN001082_RS36130;product=PspA/IM30 family protein;protein_id=WP_000511981.1;transl_table=11
NZ_APAH01000247.1	RefSeq	gene	16372	16680	.	-	.	ID=gene-CFSAN001082_RS36135;Name=CFSAN001082_RS36135;end_range=16680,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36135;old_locus_tag=CFSAN001082_12433;partial=true
NZ_APAH01000247.1	Protein Homology	CDS	16372	16680	.	-	0	ID=cds-WP_001534897.1;Parent=gene-CFSAN001082_RS36135;Dbxref=GenBank:WP_001534897.1;Name=WP_001534897.1;end_range=16680,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463231.1;locus_tag=CFSAN001082_RS36135;partial=true;product=DUF2170 family protein;protein_id=WP_001534897.1;transl_table=11
##sequence-region NZ_APAH01000248.1 1 1031
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000248.1	RefSeq	region	1	1031	.	+	.	ID=NZ_APAH01000248.1:1..1031;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000248.1	RefSeq	gene	1	999	.	+	.	ID=gene-CFSAN001082_RS36140;Name=CFSAN001082_RS36140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36140;old_locus_tag=CFSAN001082_12438;partial=true;start_range=.,1
NZ_APAH01000248.1	Protein Homology	CDS	1	999	.	+	0	ID=cds-WP_023254406.1;Parent=gene-CFSAN001082_RS36140;Dbxref=GenBank:WP_023254406.1;Name=WP_023254406.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000074132.1;locus_tag=CFSAN001082_RS36140;partial=true;product=SLC13 family permease;protein_id=WP_023254406.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000249.1 1 504
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000249.1	RefSeq	region	1	504	.	+	.	ID=NZ_APAH01000249.1:1..504;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000249.1	RefSeq	gene	19	504	.	+	.	ID=gene-CFSAN001082_RS36145;Name=CFSAN001082_RS36145;end_range=504,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36145;old_locus_tag=CFSAN001082_12443;partial=true
NZ_APAH01000249.1	Protein Homology	CDS	19	504	.	+	0	ID=cds-WP_023254407.1;Parent=gene-CFSAN001082_RS36145;Dbxref=GenBank:WP_023254407.1;Name=WP_023254407.1;end_range=504,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000691472.1;locus_tag=CFSAN001082_RS36145;partial=true;product=hypothetical protein;protein_id=WP_023254407.1;transl_table=11
##sequence-region NZ_APAH01000250.1 1 238
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000250.1	RefSeq	region	1	238	.	+	.	ID=NZ_APAH01000250.1:1..238;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000250.1	RefSeq	gene	1	88	.	-	.	ID=gene-CFSAN001082_RS48905;Name=CFSAN001082_RS48905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48905;old_locus_tag=CFSAN001082_12448;partial=true;start_range=.,1
NZ_APAH01000250.1	Protein Homology	CDS	1	88	.	-	0	ID=cds-WP_023254408.1;Parent=gene-CFSAN001082_RS48905;Dbxref=GenBank:WP_023254408.1;Name=WP_023254408.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462617.1;locus_tag=CFSAN001082_RS48905;partial=true;product=hypothetical protein;protein_id=WP_023254408.1;start_range=.,1;transl_table=11
NZ_APAH01000250.1	RefSeq	gene	106	238	.	-	.	ID=gene-CFSAN001082_RS47110;Name=CFSAN001082_RS47110;end_range=238,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47110;partial=true
NZ_APAH01000250.1	Protein Homology	CDS	106	238	.	-	1	ID=cds-WP_077911158.1;Parent=gene-CFSAN001082_RS47110;Dbxref=GenBank:WP_077911158.1;Name=WP_077911158.1;Ontology_term=GO:0009103,GO:0008918;end_range=238,.;gbkey=CDS;go_function=lipopolysaccharide 3-alpha-galactosyltransferase activity|0008918||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462618.1;locus_tag=CFSAN001082_RS47110;partial=true;product=glycosyltransferase family 8 C-terminal domain-containing protein;protein_id=WP_077911158.1;transl_table=11
##sequence-region NZ_APAH01000251.1 1 459
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000251.1	RefSeq	region	1	459	.	+	.	ID=NZ_APAH01000251.1:1..459;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000251.1	RefSeq	pseudogene	1	351	.	-	.	ID=gene-CFSAN001082_RS36150;Name=ydiV;gbkey=Gene;gene=ydiV;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS36150;old_locus_tag=CFSAN001082_12453;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000251.1	Protein Homology	CDS	1	351	.	-	0	ID=cds-CFSAN001082_RS36150;Parent=gene-CFSAN001082_RS36150;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=ydiV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460310.1;locus_tag=CFSAN001082_RS36150;partial=true;product=anti-FlhDC factor YdiV;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000252.1 1 33778
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000252.1	RefSeq	region	1	33778	.	+	.	ID=NZ_APAH01000252.1:1..33778;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000252.1	RefSeq	pseudogene	1	112	.	+	.	ID=gene-CFSAN001082_RS48910;Name=CFSAN001082_RS48910;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48910;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000252.1	Protein Homology	CDS	1	112	.	+	1	ID=cds-CFSAN001082_RS48910;Parent=gene-CFSAN001082_RS48910;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460657.1;locus_tag=CFSAN001082_RS48910;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	87	386	.	+	.	ID=gene-CFSAN001082_RS0123575;Name=CFSAN001082_RS0123575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123575
NZ_APAH01000252.1	Protein Homology	CDS	87	386	.	+	0	ID=cds-WP_031612860.1;Parent=gene-CFSAN001082_RS0123575;Dbxref=GenBank:WP_031612860.1;Name=WP_031612860.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460658.1;locus_tag=CFSAN001082_RS0123575;product=hypothetical protein;protein_id=WP_031612860.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	504	1292	.	+	.	ID=gene-CFSAN001082_RS36155;Name=fabI;gbkey=Gene;gene=fabI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36155;old_locus_tag=CFSAN001082_12458
NZ_APAH01000252.1	Protein Homology	CDS	504	1292	.	+	0	ID=cds-WP_000506501.1;Parent=gene-CFSAN001082_RS36155;Dbxref=GenBank:WP_000506501.1;Name=WP_000506501.1;gbkey=CDS;gene=fabI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126472.1;locus_tag=CFSAN001082_RS36155;product=enoyl-ACP reductase FabI;protein_id=WP_000506501.1;transl_table=11
NZ_APAH01000252.1	RefSeq	pseudogene	1492	2469	.	+	.	ID=gene-CFSAN001082_RS36160;Name=CFSAN001082_RS36160;end_range=2469,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS36160;old_locus_tag=CFSAN001082_12463;partial=true;pseudo=true
NZ_APAH01000252.1	Protein Homology	CDS	1492	2469	.	+	0	ID=cds-CFSAN001082_RS36160;Parent=gene-CFSAN001082_RS36160;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=2469,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460660.1;locus_tag=CFSAN001082_RS36160;partial=true;product=carboxymuconolactone decarboxylase family protein;pseudo=true;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	2714	4648	.	+	.	ID=gene-CFSAN001082_RS36165;Name=CFSAN001082_RS36165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36165;old_locus_tag=CFSAN001082_12468
NZ_APAH01000252.1	Protein Homology	CDS	2714	4648	.	+	0	ID=cds-WP_023203179.1;Parent=gene-CFSAN001082_RS36165;Dbxref=GenBank:WP_023203179.1;Name=WP_023203179.1;Ontology_term=GO:0006401,GO:0003723,GO:0008859;gbkey=CDS;go_function=RNA binding|0003723||IEA,exoribonuclease II activity|0008859||IEA;go_process=RNA catabolic process|0006401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460661.1;locus_tag=CFSAN001082_RS36165;product=exoribonuclease II;protein_id=WP_023203179.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	4910	6892	.	+	.	ID=gene-CFSAN001082_RS36170;Name=pdeR;gbkey=Gene;gene=pdeR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36170;old_locus_tag=CFSAN001082_12473
NZ_APAH01000252.1	Protein Homology	CDS	4910	6892	.	+	0	ID=cds-WP_024150295.1;Parent=gene-CFSAN001082_RS36170;Dbxref=GenBank:WP_024150295.1;Name=WP_024150295.1;gbkey=CDS;gene=pdeR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460662.1;locus_tag=CFSAN001082_RS36170;product=cyclic di-GMP phosphodiesterase;protein_id=WP_024150295.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	7014	7193	.	+	.	ID=gene-CFSAN001082_RS36175;Name=CFSAN001082_RS36175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36175;old_locus_tag=CFSAN001082_12478
NZ_APAH01000252.1	Protein Homology	CDS	7014	7193	.	+	0	ID=cds-WP_001279854.1;Parent=gene-CFSAN001082_RS36175;Dbxref=GenBank:WP_001279854.1;Name=WP_001279854.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001279854.1;locus_tag=CFSAN001082_RS36175;product=hypothetical protein;protein_id=WP_001279854.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	7280	8032	.	+	.	ID=gene-CFSAN001082_RS36180;Name=CFSAN001082_RS36180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36180;old_locus_tag=CFSAN001082_12483
NZ_APAH01000252.1	Protein Homology	CDS	7280	8032	.	+	0	ID=cds-WP_017441289.1;Parent=gene-CFSAN001082_RS36180;Dbxref=GenBank:WP_017441289.1;Name=WP_017441289.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460663.1;locus_tag=CFSAN001082_RS36180;product=DNA-binding transcriptional regulator YciT;protein_id=WP_017441289.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	8291	8509	.	+	.	ID=gene-CFSAN001082_RS36185;Name=osmB;gbkey=Gene;gene=osmB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36185;old_locus_tag=CFSAN001082_12488
NZ_APAH01000252.1	Protein Homology	CDS	8291	8509	.	+	0	ID=cds-WP_000481166.1;Parent=gene-CFSAN001082_RS36185;Dbxref=GenBank:WP_000481166.1;Name=WP_000481166.1;gbkey=CDS;gene=osmB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460664.1;locus_tag=CFSAN001082_RS36185;product=osmotically-inducible lipoprotein OsmB;protein_id=WP_000481166.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	8629	8955	.	-	.	ID=gene-CFSAN001082_RS36190;Name=yciH;gbkey=Gene;gene=yciH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36190;old_locus_tag=CFSAN001082_12493
NZ_APAH01000252.1	Protein Homology	CDS	8629	8955	.	-	0	ID=cds-WP_001285199.1;Parent=gene-CFSAN001082_RS36190;Dbxref=GenBank:WP_001285199.1;Name=WP_001285199.1;gbkey=CDS;gene=yciH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460665.1;locus_tag=CFSAN001082_RS36190;product=stress response translation initiation inhibitor YciH;protein_id=WP_001285199.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	8955	9692	.	-	.	ID=gene-CFSAN001082_RS36195;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36195;old_locus_tag=CFSAN001082_12498
NZ_APAH01000252.1	Protein Homology	CDS	8955	9692	.	-	0	ID=cds-WP_001529407.1;Parent=gene-CFSAN001082_RS36195;Dbxref=GenBank:WP_001529407.1;Name=WP_001529407.1;Ontology_term=GO:0006207,GO:0044205,GO:0004590;gbkey=CDS;gene=pyrF;go_function=orotidine-5'-phosphate decarboxylase activity|0004590||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,'de novo' UMP biosynthetic process|0044205||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460666.1;locus_tag=CFSAN001082_RS36195;product=orotidine-5'-phosphate decarboxylase;protein_id=WP_001529407.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	9883	11052	.	-	.	ID=gene-CFSAN001082_RS36200;Name=lapB;gbkey=Gene;gene=lapB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36200;old_locus_tag=CFSAN001082_12503
NZ_APAH01000252.1	Protein Homology	CDS	9883	11052	.	-	0	ID=cds-WP_000891378.1;Parent=gene-CFSAN001082_RS36200;Dbxref=GenBank:WP_000891378.1;Name=WP_000891378.1;Ontology_term=GO:0008653,GO:0005515;gbkey=CDS;gene=lapB;go_function=protein binding|0005515||IEA;go_process=lipopolysaccharide metabolic process|0008653||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000891373.1;locus_tag=CFSAN001082_RS36200;product=lipopolysaccharide assembly protein LapB;protein_id=WP_000891378.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	11059	11367	.	-	.	ID=gene-CFSAN001082_RS36205;Name=CFSAN001082_RS36205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36205;old_locus_tag=CFSAN001082_12508
NZ_APAH01000252.1	Protein Homology	CDS	11059	11367	.	-	0	ID=cds-WP_000876301.1;Parent=gene-CFSAN001082_RS36205;Dbxref=GenBank:WP_000876301.1;Name=WP_000876301.1;Ontology_term=GO:0008653,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_process=lipopolysaccharide metabolic process|0008653||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460668.1;locus_tag=CFSAN001082_RS36205;product=LapA family protein;protein_id=WP_000876301.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	11517	12281	.	-	.	ID=gene-CFSAN001082_RS36210;Name=pgpB;gbkey=Gene;gene=pgpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36210;old_locus_tag=CFSAN001082_12513
NZ_APAH01000252.1	Protein Homology	CDS	11517	12281	.	-	0	ID=cds-WP_000948636.1;Parent=gene-CFSAN001082_RS36210;Dbxref=GenBank:WP_000948636.1;Name=WP_000948636.1;Ontology_term=GO:0008654,GO:0004609;gbkey=CDS;gene=pgpB;go_function=phosphatidylserine decarboxylase activity|0004609||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460669.1;locus_tag=CFSAN001082_RS36210;product=phosphatidylglycerophosphatase B;protein_id=WP_000948636.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	12477	13067	.	+	.	ID=gene-CFSAN001082_RS36215;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36215;old_locus_tag=CFSAN001082_12518
NZ_APAH01000252.1	Protein Homology	CDS	12477	13067	.	+	0	ID=cds-WP_001675619.1;Parent=gene-CFSAN001082_RS36215;Dbxref=GenBank:WP_001675619.1;Name=WP_001675619.1;Ontology_term=GO:0003935;gbkey=CDS;gene=ribA;go_function=GTP cyclohydrolase II activity|0003935||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460670.1;locus_tag=CFSAN001082_RS36215;product=GTP cyclohydrolase II;protein_id=WP_001675619.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	13123	15798	.	-	.	ID=gene-CFSAN001082_RS36220;Name=acnA;gbkey=Gene;gene=acnA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36220;old_locus_tag=CFSAN001082_12523
NZ_APAH01000252.1	Protein Homology	CDS	13123	15798	.	-	0	ID=cds-WP_017441288.1;Parent=gene-CFSAN001082_RS36220;Dbxref=GenBank:WP_017441288.1;Name=WP_017441288.1;Ontology_term=GO:0006099,GO:0003994;gbkey=CDS;gene=acnA;go_function=aconitate hydratase activity|0003994||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460671.1;locus_tag=CFSAN001082_RS36220;product=aconitate hydratase AcnA;protein_id=WP_017441288.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	15981	16073	.	-	.	ID=gene-CFSAN001082_RS48915;Name=ymiC;gbkey=Gene;gene=ymiC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48915
NZ_APAH01000252.1	Protein Homology	CDS	15981	16073	.	-	0	ID=cds-WP_223156441.1;Parent=gene-CFSAN001082_RS48915;Dbxref=GenBank:WP_223156441.1;Name=WP_223156441.1;gbkey=CDS;gene=ymiC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_226998799.1;locus_tag=CFSAN001082_RS48915;product=small membrane protein YmiC;protein_id=WP_223156441.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	16354	16494	.	-	.	ID=gene-CFSAN001082_RS36225;Name=CFSAN001082_RS36225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36225;old_locus_tag=CFSAN001082_12528
NZ_APAH01000252.1	Protein Homology	CDS	16354	16494	.	-	0	ID=cds-WP_213083417.1;Parent=gene-CFSAN001082_RS36225;Dbxref=GenBank:WP_213083417.1;Name=WP_213083417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588449.3;locus_tag=CFSAN001082_RS36225;product=YmiA family putative membrane protein;protein_id=WP_213083417.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	16775	17749	.	-	.	ID=gene-CFSAN001082_RS36230;Name=cysB;gbkey=Gene;gene=cysB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36230;old_locus_tag=CFSAN001082_12533
NZ_APAH01000252.1	Protein Homology	CDS	16775	17749	.	-	0	ID=cds-WP_000776230.1;Parent=gene-CFSAN001082_RS36230;Dbxref=GenBank:WP_000776230.1;Name=WP_000776230.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=cysB;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012017585.1;locus_tag=CFSAN001082_RS36230;product=HTH-type transcriptional regulator CysB;protein_id=WP_000776230.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	18160	20757	.	-	.	ID=gene-CFSAN001082_RS36235;Name=topA;gbkey=Gene;gene=topA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36235;old_locus_tag=CFSAN001082_12543
NZ_APAH01000252.1	Protein Homology	CDS	18160	20757	.	-	0	ID=cds-WP_000513593.1;Parent=gene-CFSAN001082_RS36235;Dbxref=GenBank:WP_000513593.1;Name=WP_000513593.1;Ontology_term=GO:0006260,GO:0006265,GO:0003677,GO:0003917,GO:0005737;gbkey=CDS;gene=topA;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type I (single strand cut%2C ATP-independent) activity|0003917||IEA;go_process=DNA replication|0006260||IEA,DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000513601.1;locus_tag=CFSAN001082_RS36235;product=type I DNA topoisomerase;protein_id=WP_000513593.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	21160	21411	.	+	.	ID=gene-CFSAN001082_RS36240;Name=CFSAN001082_RS36240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36240;old_locus_tag=CFSAN001082_12548
NZ_APAH01000252.1	Protein Homology	CDS	21160	21411	.	+	0	ID=cds-WP_000548616.1;Parent=gene-CFSAN001082_RS36240;Dbxref=GenBank:WP_000548616.1;Name=WP_000548616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460674.1;locus_tag=CFSAN001082_RS36240;product=YciN family protein;protein_id=WP_000548616.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	21453	22499	.	-	.	ID=gene-CFSAN001082_RS36245;Name=sohB;gbkey=Gene;gene=sohB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36245;old_locus_tag=CFSAN001082_12553
NZ_APAH01000252.1	Protein Homology	CDS	21453	22499	.	-	0	ID=cds-WP_000422082.1;Parent=gene-CFSAN001082_RS36245;Dbxref=GenBank:WP_000422082.1;Name=WP_000422082.1;Ontology_term=GO:0006508,GO:0008233;gbkey=CDS;gene=sohB;go_function=peptidase activity|0008233||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460675.1;locus_tag=CFSAN001082_RS36245;product=protease SohB;protein_id=WP_000422082.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	22737	23498	.	+	.	ID=gene-CFSAN001082_RS36250;Name=CFSAN001082_RS36250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36250;old_locus_tag=CFSAN001082_12558
NZ_APAH01000252.1	Protein Homology	CDS	22737	23498	.	+	0	ID=cds-WP_000559310.1;Parent=gene-CFSAN001082_RS36250;Dbxref=GenBank:WP_000559310.1;Name=WP_000559310.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460676.1;locus_tag=CFSAN001082_RS36250;product=YciK family oxidoreductase;protein_id=WP_000559310.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	23495	24085	.	+	.	ID=gene-CFSAN001082_RS36255;Name=cobO;gbkey=Gene;gene=cobO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36255;old_locus_tag=CFSAN001082_12563
NZ_APAH01000252.1	Protein Homology	CDS	23495	24085	.	+	0	ID=cds-WP_001278856.1;Parent=gene-CFSAN001082_RS36255;Dbxref=GenBank:WP_001278856.1;Name=WP_001278856.1;Ontology_term=GO:0009236,GO:0008817;gbkey=CDS;gene=cobO;go_function=corrinoid adenosyltransferase activity|0008817||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460677.1;locus_tag=CFSAN001082_RS36255;product=cob(I)yrinic acid a%2Cc-diamide adenosyltransferase;protein_id=WP_001278856.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	24172	25047	.	-	.	ID=gene-CFSAN001082_RS36260;Name=rluB;gbkey=Gene;gene=rluB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36260;old_locus_tag=CFSAN001082_12568
NZ_APAH01000252.1	Protein Homology	CDS	24172	25047	.	-	0	ID=cds-WP_001291233.1;Parent=gene-CFSAN001082_RS36260;Dbxref=GenBank:WP_001291233.1;Name=WP_001291233.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=rluB;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460678.1;locus_tag=CFSAN001082_RS36260;product=23S rRNA pseudouridine(2605) synthase RluB;protein_id=WP_001291233.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	25148	25768	.	-	.	ID=gene-CFSAN001082_RS36265;Name=CFSAN001082_RS36265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36265;old_locus_tag=CFSAN001082_12573
NZ_APAH01000252.1	Protein Homology	CDS	25148	25768	.	-	0	ID=cds-WP_000077250.1;Parent=gene-CFSAN001082_RS36265;Dbxref=GenBank:WP_000077250.1;Name=WP_000077250.1;Ontology_term=GO:0006400,GO:0003725,GO:0061710;gbkey=CDS;go_function=double-stranded RNA binding|0003725||IEA,L-threonylcarbamoyladenylate synthase|0061710||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126434.1;locus_tag=CFSAN001082_RS36265;product=L-threonylcarbamoyladenylate synthase;protein_id=WP_000077250.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	25776	26657	.	-	.	ID=gene-CFSAN001082_RS36270;Name=rnm;gbkey=Gene;gene=rnm;gene_biotype=protein_coding;gene_synonym=trpH,yciV;locus_tag=CFSAN001082_RS36270;old_locus_tag=CFSAN001082_12578
NZ_APAH01000252.1	Protein Homology	CDS	25776	26657	.	-	0	ID=cds-WP_000500448.1;Parent=gene-CFSAN001082_RS36270;Dbxref=GenBank:WP_000500448.1;Name=WP_000500448.1;Ontology_term=GO:0006364,GO:0004534,GO:0035312,GO:0097657;gbkey=CDS;gene=rnm;go_function=5'-3' RNA exonuclease activity|0004534||IEA,5'-3' DNA exonuclease activity|0035312||IEA,3'%2C5'-nucleotide bisphosphate phosphatase activity|0097657||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460680.1;locus_tag=CFSAN001082_RS36270;product=RNase RNM;protein_id=WP_000500448.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	26779	26823	.	+	.	ID=gene-CFSAN001082_RS47130;Name=trpL;gbkey=Gene;gene=trpL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47130
NZ_APAH01000252.1	Protein Homology	CDS	26779	26823	.	+	0	ID=cds-WP_010989026.1;Parent=gene-CFSAN001082_RS47130;Dbxref=GenBank:WP_010989026.1;Name=WP_010989026.1;gbkey=CDS;gene=trpL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448140.1;locus_tag=CFSAN001082_RS47130;product=trp operon leader peptide;protein_id=WP_010989026.1;transl_table=11
NZ_APAH01000252.1	cmsearch	sequence_feature	26800	26895	.	+	.	ID=id-NZ_APAH01000252.1:26800..26895;Dbxref=RFAM:RF00513;Note=Trp leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_APAH01000252.1	RefSeq	gene	26918	28480	.	+	.	ID=gene-CFSAN001082_RS36275;Name=CFSAN001082_RS36275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36275;old_locus_tag=CFSAN001082_12583
NZ_APAH01000252.1	Protein Homology	CDS	26918	28480	.	+	0	ID=cds-WP_023254412.1;Parent=gene-CFSAN001082_RS36275;Dbxref=GenBank:WP_023254412.1;Name=WP_023254412.1;Ontology_term=GO:0009058,GO:0004049;gbkey=CDS;go_function=anthranilate synthase activity|0004049||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460682.1;locus_tag=CFSAN001082_RS36275;product=anthranilate synthase component 1;protein_id=WP_023254412.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	28480	30075	.	+	.	ID=gene-CFSAN001082_RS36280;Name=trpD;gbkey=Gene;gene=trpD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36280;old_locus_tag=CFSAN001082_12588
NZ_APAH01000252.1	Protein Homology	CDS	28480	30075	.	+	0	ID=cds-WP_000763489.1;Parent=gene-CFSAN001082_RS36280;Dbxref=GenBank:WP_000763489.1;Name=WP_000763489.1;Ontology_term=GO:0000162,GO:0004048;gbkey=CDS;gene=trpD;go_function=anthranilate phosphoribosyltransferase activity|0004048||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008784940.1;locus_tag=CFSAN001082_RS36280;product=bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD;protein_id=WP_000763489.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	30079	31437	.	+	.	ID=gene-CFSAN001082_RS36285;Name=trpCF;gbkey=Gene;gene=trpCF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36285;old_locus_tag=CFSAN001082_12593
NZ_APAH01000252.1	Protein Homology	CDS	30079	31437	.	+	0	ID=cds-WP_017441286.1;Parent=gene-CFSAN001082_RS36285;Dbxref=GenBank:WP_017441286.1;Name=WP_017441286.1;Ontology_term=GO:0006568,GO:0004425,GO:0004640;gbkey=CDS;gene=trpCF;go_function=indole-3-glycerol-phosphate synthase activity|0004425||IEA,phosphoribosylanthranilate isomerase activity|0004640||IEA;go_process=L-tryptophan metabolic process|0006568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460684.1;locus_tag=CFSAN001082_RS36285;product=bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF;protein_id=WP_017441286.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	31447	32640	.	+	.	ID=gene-CFSAN001082_RS36290;Name=trpB;gbkey=Gene;gene=trpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36290;old_locus_tag=CFSAN001082_12598
NZ_APAH01000252.1	Protein Homology	CDS	31447	32640	.	+	0	ID=cds-WP_017441285.1;Parent=gene-CFSAN001082_RS36290;Dbxref=GenBank:WP_017441285.1;Name=WP_017441285.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpB;go_function=tryptophan synthase activity|0004834||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460685.1;locus_tag=CFSAN001082_RS36290;product=tryptophan synthase subunit beta;protein_id=WP_017441285.1;transl_table=11
NZ_APAH01000252.1	RefSeq	gene	32640	33446	.	+	.	ID=gene-CFSAN001082_RS36295;Name=trpA;gbkey=Gene;gene=trpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36295;old_locus_tag=CFSAN001082_12603
NZ_APAH01000252.1	Protein Homology	CDS	32640	33446	.	+	0	ID=cds-WP_000443031.1;Parent=gene-CFSAN001082_RS36295;Dbxref=GenBank:WP_000443031.1;Name=WP_000443031.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpA;go_function=tryptophan synthase activity|0004834||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460686.1;locus_tag=CFSAN001082_RS36295;product=tryptophan synthase subunit alpha;protein_id=WP_000443031.1;transl_table=11
##sequence-region NZ_APAH01000253.1 1 25922
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000253.1	RefSeq	region	1	25922	.	+	.	ID=NZ_APAH01000253.1:1..25922;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000253.1	RefSeq	gene	1	994	.	+	.	ID=gene-CFSAN001082_RS36300;Name=CFSAN001082_RS36300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36300;old_locus_tag=CFSAN001082_12608;partial=true;start_range=.,1
NZ_APAH01000253.1	Protein Homology	CDS	1	994	.	+	1	ID=cds-WP_023254413.1;Parent=gene-CFSAN001082_RS36300;Dbxref=GenBank:WP_023254413.1;Name=WP_023254413.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459646.1;locus_tag=CFSAN001082_RS36300;partial=true;product=tetratricopeptide repeat protein;protein_id=WP_023254413.1;start_range=.,1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	1033	1506	.	-	.	ID=gene-CFSAN001082_RS36305;Name=CFSAN001082_RS36305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36305;old_locus_tag=CFSAN001082_12613
NZ_APAH01000253.1	Protein Homology	CDS	1033	1506	.	-	0	ID=cds-WP_001044885.1;Parent=gene-CFSAN001082_RS36305;Dbxref=GenBank:WP_001044885.1;Name=WP_001044885.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459645.1;locus_tag=CFSAN001082_RS36305;product=zinc ribbon-containing protein;protein_id=WP_001044885.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	1599	3527	.	-	.	ID=gene-CFSAN001082_RS36310;Name=CFSAN001082_RS36310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36310;old_locus_tag=CFSAN001082_12618
NZ_APAH01000253.1	Protein Homology	CDS	1599	3527	.	-	0	ID=cds-WP_023254414.1;Parent=gene-CFSAN001082_RS36310;Dbxref=GenBank:WP_023254414.1;Name=WP_023254414.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459644.1;locus_tag=CFSAN001082_RS36310;product=sigma-54 interaction domain-containing protein;protein_id=WP_023254414.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	3595	4548	.	-	.	ID=gene-CFSAN001082_RS36315;Name=CFSAN001082_RS36315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36315;old_locus_tag=CFSAN001082_12623
NZ_APAH01000253.1	Protein Homology	CDS	3595	4548	.	-	0	ID=cds-WP_000694480.1;Parent=gene-CFSAN001082_RS36315;Dbxref=GenBank:WP_000694480.1;Name=WP_000694480.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459643.1;locus_tag=CFSAN001082_RS36315;product=2-keto-3-deoxygluconate permease;protein_id=WP_000694480.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	4598	5770	.	-	.	ID=gene-CFSAN001082_RS36320;Name=CFSAN001082_RS36320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36320;old_locus_tag=CFSAN001082_12628
NZ_APAH01000253.1	Protein Homology	CDS	4598	5770	.	-	0	ID=cds-WP_001670689.1;Parent=gene-CFSAN001082_RS36320;Dbxref=GenBank:WP_001670689.1;Name=WP_001670689.1;Ontology_term=GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447101.1;locus_tag=CFSAN001082_RS36320;product=UxaA family hydrolase;protein_id=WP_001670689.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	5787	6128	.	-	.	ID=gene-CFSAN001082_RS36325;Name=CFSAN001082_RS36325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36325;old_locus_tag=CFSAN001082_12633
NZ_APAH01000253.1	Protein Homology	CDS	5787	6128	.	-	0	ID=cds-WP_001574029.1;Parent=gene-CFSAN001082_RS36325;Dbxref=GenBank:WP_001574029.1;Name=WP_001574029.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447100.1;locus_tag=CFSAN001082_RS36325;product=UxaA family hydrolase;protein_id=WP_001574029.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	6365	8947	.	+	.	ID=gene-CFSAN001082_RS36330;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36330;old_locus_tag=CFSAN001082_12638
NZ_APAH01000253.1	Protein Homology	CDS	6365	8947	.	+	0	ID=cds-WP_023254415.1;Parent=gene-CFSAN001082_RS36330;Dbxref=GenBank:WP_023254415.1;Name=WP_023254415.1;Ontology_term=GO:0006429,GO:0000166,GO:0004823,GO:0005524;gbkey=CDS;gene=leuS;go_function=nucleotide binding|0000166||IEA,leucine-tRNA ligase activity|0004823||IEA,ATP binding|0005524||IEA;go_process=leucyl-tRNA aminoacylation|0006429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008456064.1;locus_tag=CFSAN001082_RS36330;product=leucine--tRNA ligase;protein_id=WP_023254415.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	8962	9552	.	+	.	ID=gene-CFSAN001082_RS36335;Name=lptE;gbkey=Gene;gene=lptE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36335;old_locus_tag=CFSAN001082_12643
NZ_APAH01000253.1	Protein Homology	CDS	8962	9552	.	+	0	ID=cds-WP_001269950.1;Parent=gene-CFSAN001082_RS36335;Dbxref=GenBank:WP_001269950.1;Name=WP_001269950.1;Ontology_term=GO:0043165,GO:0019867;gbkey=CDS;gene=lptE;go_component=outer membrane|0019867||IEA;go_process=Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459639.1;locus_tag=CFSAN001082_RS36335;product=LPS assembly lipoprotein LptE;protein_id=WP_001269950.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	9552	10583	.	+	.	ID=gene-CFSAN001082_RS36340;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36340;old_locus_tag=CFSAN001082_12648
NZ_APAH01000253.1	Protein Homology	CDS	9552	10583	.	+	0	ID=cds-WP_000620498.1;Parent=gene-CFSAN001082_RS36340;Dbxref=GenBank:WP_000620498.1;Name=WP_000620498.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=holA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459638.1;locus_tag=CFSAN001082_RS36340;product=DNA polymerase III subunit delta;protein_id=WP_000620498.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	10585	11226	.	+	.	ID=gene-CFSAN001082_RS36345;Name=nadD;gbkey=Gene;gene=nadD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36345;old_locus_tag=CFSAN001082_12653
NZ_APAH01000253.1	Protein Homology	CDS	10585	11226	.	+	0	ID=cds-WP_001518902.1;Parent=gene-CFSAN001082_RS36345;Dbxref=GenBank:WP_001518902.1;Name=WP_001518902.1;Ontology_term=GO:0009435,GO:0016779;gbkey=CDS;gene=nadD;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459637.1;locus_tag=CFSAN001082_RS36345;product=nicotinate-nucleotide adenylyltransferase;protein_id=WP_001518902.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	11201	12295	.	-	.	ID=gene-CFSAN001082_RS36350;Name=cobD;gbkey=Gene;gene=cobD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36350;old_locus_tag=CFSAN001082_12658
NZ_APAH01000253.1	Protein Homology	CDS	11201	12295	.	-	0	ID=cds-WP_001173255.1;Parent=gene-CFSAN001082_RS36350;Dbxref=GenBank:WP_001173255.1;Name=WP_001173255.1;Ontology_term=GO:0009236,GO:0003824;gbkey=CDS;gene=cobD;go_function=catalytic activity|0003824||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459636.1;locus_tag=CFSAN001082_RS36350;product=threonine-phosphate decarboxylase CobD;protein_id=WP_001173255.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	12392	13000	.	+	.	ID=gene-CFSAN001082_RS36355;Name=CFSAN001082_RS36355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36355;old_locus_tag=CFSAN001082_12663
NZ_APAH01000253.1	Protein Homology	CDS	12392	13000	.	+	0	ID=cds-WP_001241922.1;Parent=gene-CFSAN001082_RS36355;Dbxref=GenBank:WP_001241922.1;Name=WP_001241922.1;Ontology_term=GO:0009236,GO:0043755;gbkey=CDS;go_function=alpha-ribazole phosphatase activity|0043755||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459635.1;locus_tag=CFSAN001082_RS36355;product=adenosylcobalamin/alpha-ribazole phosphatase;protein_id=WP_001241922.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	13328	13645	.	+	.	ID=gene-CFSAN001082_RS36365;Name=rsfS;gbkey=Gene;gene=rsfS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36365;old_locus_tag=CFSAN001082_12673
NZ_APAH01000253.1	Protein Homology	CDS	13328	13645	.	+	0	ID=cds-WP_001161670.1;Parent=gene-CFSAN001082_RS36365;Dbxref=GenBank:WP_001161670.1;Name=WP_001161670.1;Ontology_term=GO:0017148,GO:0043022;gbkey=CDS;gene=rsfS;go_function=ribosome binding|0043022||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007373852.1;locus_tag=CFSAN001082_RS36365;product=ribosome silencing factor;protein_id=WP_001161670.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	13649	14116	.	+	.	ID=gene-CFSAN001082_RS36370;Name=rlmH;gbkey=Gene;gene=rlmH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36370;old_locus_tag=CFSAN001082_12678
NZ_APAH01000253.1	Protein Homology	CDS	13649	14116	.	+	0	ID=cds-WP_000776107.1;Parent=gene-CFSAN001082_RS36370;Dbxref=GenBank:WP_000776107.1;Name=WP_000776107.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;gene=rlmH;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016245807.1;locus_tag=CFSAN001082_RS36370;product=23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH;protein_id=WP_000776107.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	14147	16048	.	+	.	ID=gene-CFSAN001082_RS36375;Name=mrdA;gbkey=Gene;gene=mrdA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36375;old_locus_tag=CFSAN001082_12683
NZ_APAH01000253.1	Protein Homology	CDS	14147	16048	.	+	0	ID=cds-WP_000828700.1;Parent=gene-CFSAN001082_RS36375;Dbxref=GenBank:WP_000828700.1;Name=WP_000828700.1;Ontology_term=GO:0009252,GO:0008658,GO:0009002,GO:0016020;gbkey=CDS;gene=mrdA;go_component=membrane|0016020||IEA;go_function=penicillin binding|0008658||IEA,serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459632.1;locus_tag=CFSAN001082_RS36375;product=peptidoglycan DD-transpeptidase MrdA;protein_id=WP_000828700.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	16051	17163	.	+	.	ID=gene-CFSAN001082_RS36380;Name=mrdB;gbkey=Gene;gene=mrdB;gene_biotype=protein_coding;gene_synonym=rodA;locus_tag=CFSAN001082_RS36380;old_locus_tag=CFSAN001082_12688
NZ_APAH01000253.1	Protein Homology	CDS	16051	17163	.	+	0	ID=cds-WP_000131713.1;Parent=gene-CFSAN001082_RS36380;Dbxref=GenBank:WP_000131713.1;Name=WP_000131713.1;Note=rod shape-determining protein RodA;gbkey=CDS;gene=mrdB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004885876.1;locus_tag=CFSAN001082_RS36380;product=peptidoglycan glycosyltransferase MrdB;protein_id=WP_000131713.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	17174	18295	.	+	.	ID=gene-CFSAN001082_RS36385;Name=rlpA;gbkey=Gene;gene=rlpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36385;old_locus_tag=CFSAN001082_12693
NZ_APAH01000253.1	Protein Homology	CDS	17174	18295	.	+	0	ID=cds-WP_023254416.1;Parent=gene-CFSAN001082_RS36385;Dbxref=GenBank:WP_023254416.1;Name=WP_023254416.1;Ontology_term=GO:0042834;gbkey=CDS;gene=rlpA;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459630.1;locus_tag=CFSAN001082_RS36385;product=endolytic peptidoglycan transglycosylase RlpA;protein_id=WP_023254416.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	18435	19646	.	+	.	ID=gene-CFSAN001082_RS36390;Name=dacA;gbkey=Gene;gene=dacA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36390;old_locus_tag=CFSAN001082_12698
NZ_APAH01000253.1	Protein Homology	CDS	18435	19646	.	+	0	ID=cds-WP_000858711.1;Parent=gene-CFSAN001082_RS36390;Dbxref=GenBank:WP_000858711.1;Name=WP_000858711.1;Ontology_term=GO:0006508,GO:0009002;gbkey=CDS;gene=dacA;go_function=serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459629.1;locus_tag=CFSAN001082_RS36390;product=D-alanyl-D-alanine carboxypeptidase DacA;protein_id=WP_000858711.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	19755	20018	.	+	.	ID=gene-CFSAN001082_RS36395;Name=ybeD;gbkey=Gene;gene=ybeD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36395;old_locus_tag=CFSAN001082_12703
NZ_APAH01000253.1	Protein Homology	CDS	19755	20018	.	+	0	ID=cds-WP_023254417.1;Parent=gene-CFSAN001082_RS36395;Dbxref=GenBank:WP_023254417.1;Name=WP_023254417.1;gbkey=CDS;gene=ybeD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459628.1;locus_tag=CFSAN001082_RS36395;product=DUF493 family protein YbeD;protein_id=WP_023254417.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	20118	20759	.	+	.	ID=gene-CFSAN001082_RS36400;Name=lipB;gbkey=Gene;gene=lipB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36400;old_locus_tag=CFSAN001082_12708
NZ_APAH01000253.1	Protein Homology	CDS	20118	20759	.	+	0	ID=cds-WP_000284009.1;Parent=gene-CFSAN001082_RS36400;Dbxref=GenBank:WP_000284009.1;Name=WP_000284009.1;Ontology_term=GO:0009249,GO:0033819;gbkey=CDS;gene=lipB;go_function=lipoyl(octanoyl) transferase activity|0033819||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415163.2;locus_tag=CFSAN001082_RS36400;product=lipoyl(octanoyl) transferase LipB;protein_id=WP_000284009.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	21061	22014	.	+	.	ID=gene-CFSAN001082_RS36405;Name=CFSAN001082_RS36405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36405;old_locus_tag=CFSAN001082_12713
NZ_APAH01000253.1	Protein Homology	CDS	21061	22014	.	+	0	ID=cds-WP_001282817.1;Parent=gene-CFSAN001082_RS36405;Dbxref=GenBank:WP_001282817.1;Name=WP_001282817.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459626.1;locus_tag=CFSAN001082_RS36405;product=YbeF family transcriptional regulator;protein_id=WP_001282817.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	22220	23185	.	+	.	ID=gene-CFSAN001082_RS36410;Name=lipA;gbkey=Gene;gene=lipA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36410;old_locus_tag=CFSAN001082_12718
NZ_APAH01000253.1	Protein Homology	CDS	22220	23185	.	+	0	ID=cds-WP_000042640.1;Parent=gene-CFSAN001082_RS36410;Dbxref=GenBank:WP_000042640.1;Name=WP_000042640.1;Ontology_term=GO:0009107,GO:0016992,GO:0051539,GO:1904047;gbkey=CDS;gene=lipA;go_function=lipoate synthase activity|0016992||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=lipoate biosynthetic process|0009107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904980.1;locus_tag=CFSAN001082_RS36410;product=lipoyl synthase;protein_id=WP_000042640.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	23271	23474	.	-	.	ID=gene-CFSAN001082_RS36415;Name=tatE;gbkey=Gene;gene=tatE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36415;old_locus_tag=CFSAN001082_12723
NZ_APAH01000253.1	Protein Homology	CDS	23271	23474	.	-	0	ID=cds-WP_000503938.1;Parent=gene-CFSAN001082_RS36415;Dbxref=GenBank:WP_000503938.1;Name=WP_000503938.1;gbkey=CDS;gene=tatE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459624.1;locus_tag=CFSAN001082_RS36415;product=twin-arginine translocase subunit TatE;protein_id=WP_000503938.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	23603	24391	.	-	.	ID=gene-CFSAN001082_RS36420;Name=CFSAN001082_RS36420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36420;old_locus_tag=CFSAN001082_12728
NZ_APAH01000253.1	Protein Homology	CDS	23603	24391	.	-	0	ID=cds-WP_023254418.1;Parent=gene-CFSAN001082_RS36420;Dbxref=GenBank:WP_023254418.1;Name=WP_023254418.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459623.1;locus_tag=CFSAN001082_RS36420;product=deaminated glutathione amidase;protein_id=WP_023254418.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	24482	24865	.	+	.	ID=gene-CFSAN001082_RS36425;Name=crcB;gbkey=Gene;gene=crcB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36425;old_locus_tag=CFSAN001082_12733
NZ_APAH01000253.1	Protein Homology	CDS	24482	24865	.	+	0	ID=cds-WP_000939753.1;Parent=gene-CFSAN001082_RS36425;Dbxref=GenBank:WP_000939753.1;Name=WP_000939753.1;Ontology_term=GO:0016020;gbkey=CDS;gene=crcB;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459622.1;locus_tag=CFSAN001082_RS36425;product=fluoride efflux transporter CrcB;protein_id=WP_000939753.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	24923	25132	.	-	.	ID=gene-CFSAN001082_RS36430;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;gene_synonym=gicA,msmC;locus_tag=CFSAN001082_RS36430;old_locus_tag=CFSAN001082_12738
NZ_APAH01000253.1	Protein Homology	CDS	24923	25132	.	-	0	ID=cds-WP_000034826.1;Parent=gene-CFSAN001082_RS36430;Dbxref=GenBank:WP_000034826.1;Name=WP_000034826.1;Ontology_term=GO:0031564,GO:0001072,GO:0003697,GO:0003723;gbkey=CDS;gene=cspE;go_function=transcription antitermination factor activity%2C RNA binding|0001072||IEA,single-stranded DNA binding|0003697||IEA,RNA binding|0003723||IEA;go_process=transcription antitermination|0031564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459621.1;locus_tag=CFSAN001082_RS36430;product=transcription antiterminator/RNA stability regulator CspE;protein_id=WP_000034826.1;transl_table=11
NZ_APAH01000253.1	RefSeq	gene	25320	25892	.	-	.	ID=gene-CFSAN001082_RS36435;Name=pagP;gbkey=Gene;gene=pagP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36435;old_locus_tag=CFSAN001082_12743
NZ_APAH01000253.1	Protein Homology	CDS	25320	25892	.	-	0	ID=cds-WP_000289055.1;Parent=gene-CFSAN001082_RS36435;Dbxref=GenBank:WP_000289055.1;Name=WP_000289055.1;gbkey=CDS;gene=pagP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459620.1;locus_tag=CFSAN001082_RS36435;product=lipid IV(A) palmitoyltransferase PagP;protein_id=WP_000289055.1;transl_table=11
##sequence-region NZ_APAH01000254.1 1 13695
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000254.1	RefSeq	region	1	13695	.	+	.	ID=NZ_APAH01000254.1:1..13695;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000254.1	RefSeq	gene	227	1828	.	+	.	ID=gene-CFSAN001082_RS36440;Name=CFSAN001082_RS36440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36440;old_locus_tag=CFSAN001082_12748
NZ_APAH01000254.1	Protein Homology	CDS	227	1828	.	+	0	ID=cds-WP_000083652.1;Parent=gene-CFSAN001082_RS36440;Dbxref=GenBank:WP_000083652.1;Name=WP_000083652.1;Ontology_term=GO:0007165,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463129.1;locus_tag=CFSAN001082_RS36440;product=EAL domain-containing protein;protein_id=WP_000083652.1;transl_table=11
NZ_APAH01000254.1	RefSeq	gene	1816	2139	.	-	.	ID=gene-CFSAN001082_RS36445;Name=soxS;gbkey=Gene;gene=soxS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36445;old_locus_tag=CFSAN001082_12753
NZ_APAH01000254.1	Protein Homology	CDS	1816	2139	.	-	0	ID=cds-WP_000019483.1;Parent=gene-CFSAN001082_RS36445;Dbxref=GenBank:WP_000019483.1;Name=WP_000019483.1;gbkey=CDS;gene=soxS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463130.1;locus_tag=CFSAN001082_RS36445;product=superoxide response transcriptional regulator SoxS;protein_id=WP_000019483.1;transl_table=11
NZ_APAH01000254.1	RefSeq	gene	2226	2684	.	+	.	ID=gene-CFSAN001082_RS36450;Name=soxR;gbkey=Gene;gene=soxR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36450;old_locus_tag=CFSAN001082_12758
NZ_APAH01000254.1	Protein Homology	CDS	2226	2684	.	+	0	ID=cds-WP_000412686.1;Parent=gene-CFSAN001082_RS36450;Dbxref=GenBank:WP_000412686.1;Name=WP_000412686.1;Ontology_term=GO:0006355,GO:0006979,GO:0003700,GO:0051537;gbkey=CDS;gene=soxR;go_function=DNA-binding transcription factor activity|0003700||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463131.1;locus_tag=CFSAN001082_RS36450;product=redox-sensitive transcriptional activator SoxR;protein_id=WP_000412686.1;transl_table=11
NZ_APAH01000254.1	RefSeq	gene	2977	3645	.	+	.	ID=gene-CFSAN001082_RS36455;Name=CFSAN001082_RS36455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36455;old_locus_tag=CFSAN001082_12763
NZ_APAH01000254.1	Protein Homology	CDS	2977	3645	.	+	0	ID=cds-WP_001651253.1;Parent=gene-CFSAN001082_RS36455;Dbxref=GenBank:WP_001651253.1;Name=WP_001651253.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463132.1;locus_tag=CFSAN001082_RS36455;product=glutathione S-transferase family protein;protein_id=WP_001651253.1;transl_table=11
NZ_APAH01000254.1	RefSeq	gene	3992	5341	.	+	.	ID=gene-CFSAN001082_RS36460;Name=ghxP;gbkey=Gene;gene=ghxP;gene_biotype=protein_coding;gene_synonym=yjcD;locus_tag=CFSAN001082_RS36460;old_locus_tag=CFSAN001082_12768
NZ_APAH01000254.1	Protein Homology	CDS	3992	5341	.	+	0	ID=cds-WP_000106907.1;Parent=gene-CFSAN001082_RS36460;Dbxref=GenBank:WP_000106907.1;Name=WP_000106907.1;gbkey=CDS;gene=ghxP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132609.1;locus_tag=CFSAN001082_RS36460;product=guanine/hypoxanthine transporter GhxP;protein_id=WP_000106907.1;transl_table=11
NZ_APAH01000254.1	RefSeq	gene	5491	7137	.	+	.	ID=gene-CFSAN001082_RS36465;Name=CFSAN001082_RS36465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36465;old_locus_tag=CFSAN001082_12778
NZ_APAH01000254.1	Protein Homology	CDS	5491	7137	.	+	0	ID=cds-WP_001536604.1;Parent=gene-CFSAN001082_RS36465;Dbxref=GenBank:WP_001536604.1;Name=WP_001536604.1;Ontology_term=GO:0006814,GO:0006885,GO:1902600,GO:0015385,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,regulation of pH|0006885||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463134.1;locus_tag=CFSAN001082_RS36465;product=Na+/H+ antiporter;protein_id=WP_001536604.1;transl_table=11
NZ_APAH01000254.1	RefSeq	gene	7232	8119	.	-	.	ID=gene-CFSAN001082_RS36470;Name=CFSAN001082_RS36470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36470;old_locus_tag=CFSAN001082_12783
NZ_APAH01000254.1	Protein Homology	CDS	7232	8119	.	-	0	ID=cds-WP_000354962.1;Parent=gene-CFSAN001082_RS36470;Dbxref=GenBank:WP_000354962.1;Name=WP_000354962.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463135.1;locus_tag=CFSAN001082_RS36470;product=LysR family transcriptional regulator;protein_id=WP_000354962.1;transl_table=11
NZ_APAH01000254.1	RefSeq	gene	8223	8633	.	+	.	ID=gene-CFSAN001082_RS36475;Name=CFSAN001082_RS36475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36475;old_locus_tag=CFSAN001082_12788
NZ_APAH01000254.1	Protein Homology	CDS	8223	8633	.	+	0	ID=cds-WP_000257347.1;Parent=gene-CFSAN001082_RS36475;Dbxref=GenBank:WP_000257347.1;Name=WP_000257347.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463136.1;locus_tag=CFSAN001082_RS36475;product=CidA/LrgA family protein;protein_id=WP_000257347.1;transl_table=11
NZ_APAH01000254.1	RefSeq	gene	8626	9315	.	+	.	ID=gene-CFSAN001082_RS36480;Name=CFSAN001082_RS36480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36480;old_locus_tag=CFSAN001082_12793
NZ_APAH01000254.1	Protein Homology	CDS	8626	9315	.	+	0	ID=cds-WP_001067096.1;Parent=gene-CFSAN001082_RS36480;Dbxref=GenBank:WP_001067096.1;Name=WP_001067096.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463137.1;locus_tag=CFSAN001082_RS36480;product=LrgB family protein;protein_id=WP_001067096.1;transl_table=11
NZ_APAH01000254.1	RefSeq	gene	9354	11003	.	-	.	ID=gene-CFSAN001082_RS36485;Name=actP;gbkey=Gene;gene=actP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36485;old_locus_tag=CFSAN001082_12798
NZ_APAH01000254.1	Protein Homology	CDS	9354	11003	.	-	0	ID=cds-WP_000832536.1;Parent=gene-CFSAN001082_RS36485;Dbxref=GenBank:WP_000832536.1;Name=WP_000832536.1;Ontology_term=GO:0006814,GO:0015123,GO:0015370,GO:0031402,GO:0005886;gbkey=CDS;gene=actP;go_component=plasma membrane|0005886||IEA;go_function=acetate transmembrane transporter activity|0015123||IEA,solute:sodium symporter activity|0015370||IEA,sodium ion binding|0031402||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463138.1;locus_tag=CFSAN001082_RS36485;product=cation/acetate symporter ActP;protein_id=WP_000832536.1;transl_table=11
NZ_APAH01000254.1	RefSeq	gene	11000	11314	.	-	.	ID=gene-CFSAN001082_RS36490;Name=CFSAN001082_RS36490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36490;old_locus_tag=CFSAN001082_12803
NZ_APAH01000254.1	Protein Homology	CDS	11000	11314	.	-	0	ID=cds-WP_000999620.1;Parent=gene-CFSAN001082_RS36490;Dbxref=GenBank:WP_000999620.1;Name=WP_000999620.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463139.1;locus_tag=CFSAN001082_RS36490;product=DUF485 domain-containing protein;protein_id=WP_000999620.1;transl_table=11
NZ_APAH01000254.1	RefSeq	gene	11554	13512	.	-	.	ID=gene-CFSAN001082_RS36495;Name=acs;gbkey=Gene;gene=acs;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36495;old_locus_tag=CFSAN001082_12808
NZ_APAH01000254.1	Protein Homology	CDS	11554	13512	.	-	0	ID=cds-WP_000083877.1;Parent=gene-CFSAN001082_RS36495;Dbxref=GenBank:WP_000083877.1;Name=WP_000083877.1;Ontology_term=GO:0019427,GO:0003987,GO:0016208;gbkey=CDS;gene=acs;go_function=acetate-CoA ligase activity|0003987||IEA,AMP binding|0016208||IEA;go_process=acetyl-CoA biosynthetic process from acetate|0019427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463140.1;locus_tag=CFSAN001082_RS36495;product=acetate--CoA ligase;protein_id=WP_000083877.1;transl_table=11
##sequence-region NZ_APAH01000255.1 1 29886
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000255.1	RefSeq	region	1	29886	.	+	.	ID=NZ_APAH01000255.1:1..29886;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000255.1	RefSeq	gene	295	3168	.	-	.	ID=gene-CFSAN001082_RS36500;Name=gcvP;gbkey=Gene;gene=gcvP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36500;old_locus_tag=CFSAN001082_12813
NZ_APAH01000255.1	Protein Homology	CDS	295	3168	.	-	0	ID=cds-WP_023254420.1;Parent=gene-CFSAN001082_RS36500;Dbxref=GenBank:WP_023254420.1;Name=WP_023254420.1;Ontology_term=GO:0019464,GO:0004375;gbkey=CDS;gene=gcvP;go_function=glycine dehydrogenase (decarboxylating) activity|0004375||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461969.1;locus_tag=CFSAN001082_RS36500;product=aminomethyl-transferring glycine dehydrogenase;protein_id=WP_023254420.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	3287	3676	.	-	.	ID=gene-CFSAN001082_RS36505;Name=gcvH;gbkey=Gene;gene=gcvH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36505;old_locus_tag=CFSAN001082_12818
NZ_APAH01000255.1	Protein Homology	CDS	3287	3676	.	-	0	ID=cds-WP_001295377.1;Parent=gene-CFSAN001082_RS36505;Dbxref=GenBank:WP_001295377.1;Name=WP_001295377.1;Ontology_term=GO:0019464,GO:0005960;gbkey=CDS;gene=gcvH;go_component=glycine cleavage complex|0005960||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123344.1;locus_tag=CFSAN001082_RS36505;product=glycine cleavage system protein GcvH;protein_id=WP_001295377.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	3702	4796	.	-	.	ID=gene-CFSAN001082_RS36510;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36510;old_locus_tag=CFSAN001082_12823
NZ_APAH01000255.1	Protein Homology	CDS	3702	4796	.	-	0	ID=cds-WP_000068733.1;Parent=gene-CFSAN001082_RS36510;Dbxref=GenBank:WP_000068733.1;Name=WP_000068733.1;Ontology_term=GO:0019464,GO:0004047,GO:0005737;gbkey=CDS;gene=gcvT;go_component=cytoplasm|0005737||IEA;go_function=aminomethyltransferase activity|0004047||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461971.1;locus_tag=CFSAN001082_RS36510;product=glycine cleavage system aminomethyltransferase GcvT;protein_id=WP_000068733.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	5251	6453	.	-	.	ID=gene-CFSAN001082_RS36515;Name=ubiI;gbkey=Gene;gene=ubiI;gene_biotype=protein_coding;gene_synonym=visC;locus_tag=CFSAN001082_RS36515;old_locus_tag=CFSAN001082_12828
NZ_APAH01000255.1	Protein Homology	CDS	5251	6453	.	-	0	ID=cds-WP_017441088.1;Parent=gene-CFSAN001082_RS36515;Dbxref=GenBank:WP_017441088.1;Name=WP_017441088.1;Ontology_term=GO:0006744,GO:0016709,GO:0071949;gbkey=CDS;gene=ubiI;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA,FAD binding|0071949||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461972.1;locus_tag=CFSAN001082_RS36515;product=FAD-dependent 2-octaprenylphenol hydroxylase;protein_id=WP_017441088.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	6579	7757	.	-	.	ID=gene-CFSAN001082_RS36520;Name=ubiH;gbkey=Gene;gene=ubiH;gene_biotype=protein_coding;gene_synonym=visB;locus_tag=CFSAN001082_RS36520;old_locus_tag=CFSAN001082_12833
NZ_APAH01000255.1	Protein Homology	CDS	6579	7757	.	-	0	ID=cds-WP_000111142.1;Parent=gene-CFSAN001082_RS36520;Dbxref=GenBank:WP_000111142.1;Name=WP_000111142.1;Ontology_term=GO:0006744,GO:0008681,GO:0016709,GO:0071949;gbkey=CDS;gene=ubiH;go_function=2-octaprenyl-6-methoxyphenol hydroxylase activity|0008681||IEA,oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA,FAD binding|0071949||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461973.2;locus_tag=CFSAN001082_RS36520;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=WP_000111142.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	7754	9070	.	-	.	ID=gene-CFSAN001082_RS36525;Name=pepP;gbkey=Gene;gene=pepP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36525;old_locus_tag=CFSAN001082_12838
NZ_APAH01000255.1	Protein Homology	CDS	7754	9070	.	-	0	ID=cds-WP_000193681.1;Parent=gene-CFSAN001082_RS36525;Dbxref=GenBank:WP_000193681.1;Name=WP_000193681.1;Ontology_term=GO:0070006;gbkey=CDS;gene=pepP;go_function=metalloaminopeptidase activity|0070006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461974.1;locus_tag=CFSAN001082_RS36525;product=Xaa-Pro aminopeptidase;protein_id=WP_000193681.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	9096	9674	.	-	.	ID=gene-CFSAN001082_RS36530;Name=CFSAN001082_RS36530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36530;old_locus_tag=CFSAN001082_12843
NZ_APAH01000255.1	Protein Homology	CDS	9096	9674	.	-	0	ID=cds-WP_000027236.1;Parent=gene-CFSAN001082_RS36530;Dbxref=GenBank:WP_000027236.1;Name=WP_000027236.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708672.2;locus_tag=CFSAN001082_RS36530;product=YecA family protein;protein_id=WP_000027236.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	9841	10170	.	+	.	ID=gene-CFSAN001082_RS36535;Name=zapA;gbkey=Gene;gene=zapA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36535;old_locus_tag=CFSAN001082_12848
NZ_APAH01000255.1	Protein Homology	CDS	9841	10170	.	+	0	ID=cds-WP_001276011.1;Parent=gene-CFSAN001082_RS36535;Dbxref=GenBank:WP_001276011.1;Name=WP_001276011.1;gbkey=CDS;gene=zapA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461976.1;locus_tag=CFSAN001082_RS36535;product=cell division protein ZapA;protein_id=WP_001276011.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	10212	10395	.	+	.	ID=gene-CFSAN001082_RS46305;Name=ssrS;gbkey=Gene;gene=ssrS;gene_biotype=ncRNA;locus_tag=CFSAN001082_RS46305
NZ_APAH01000255.1	cmsearch	ncRNA	10212	10395	.	+	.	ID=rna-CFSAN001082_RS46305;Parent=gene-CFSAN001082_RS46305;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46305;product=6S RNA
NZ_APAH01000255.1	cmsearch	exon	10212	10395	.	+	.	ID=exon-CFSAN001082_RS46305-1;Parent=rna-CFSAN001082_RS46305;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46305;product=6S RNA
NZ_APAH01000255.1	RefSeq	gene	10416	11012	.	+	.	ID=gene-CFSAN001082_RS36540;Name=CFSAN001082_RS36540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36540;old_locus_tag=CFSAN001082_12853
NZ_APAH01000255.1	Protein Homology	CDS	10416	11012	.	+	0	ID=cds-WP_031612866.1;Parent=gene-CFSAN001082_RS36540;Dbxref=GenBank:WP_031612866.1;Name=WP_031612866.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311809.4;locus_tag=CFSAN001082_RS36540;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_031612866.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	11394	12626	.	-	.	ID=gene-CFSAN001082_RS36545;Name=serA;gbkey=Gene;gene=serA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36545;old_locus_tag=CFSAN001082_12858
NZ_APAH01000255.1	Protein Homology	CDS	11394	12626	.	-	0	ID=cds-WP_001151627.1;Parent=gene-CFSAN001082_RS36545;Dbxref=GenBank:WP_001151627.1;Name=WP_001151627.1;Ontology_term=GO:0016616,GO:0051287;gbkey=CDS;gene=serA;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461978.1;locus_tag=CFSAN001082_RS36545;product=phosphoglycerate dehydrogenase;protein_id=WP_001151627.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	12893	13552	.	-	.	ID=gene-CFSAN001082_RS36550;Name=rpiA;gbkey=Gene;gene=rpiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36550;old_locus_tag=CFSAN001082_12863
NZ_APAH01000255.1	Protein Homology	CDS	12893	13552	.	-	0	ID=cds-WP_000189741.1;Parent=gene-CFSAN001082_RS36550;Dbxref=GenBank:WP_000189741.1;Name=WP_000189741.1;Ontology_term=GO:0009052,GO:0004751;gbkey=CDS;gene=rpiA;go_function=ribose-5-phosphate isomerase activity|0004751||IEA;go_process=pentose-phosphate shunt%2C non-oxidative branch|0009052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461979.1;locus_tag=CFSAN001082_RS36550;product=ribose-5-phosphate isomerase RpiA;protein_id=WP_000189741.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	13706	14599	.	+	.	ID=gene-CFSAN001082_RS36555;Name=argP;gbkey=Gene;gene=argP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36555;old_locus_tag=CFSAN001082_12868
NZ_APAH01000255.1	Protein Homology	CDS	13706	14599	.	+	0	ID=cds-WP_000828345.1;Parent=gene-CFSAN001082_RS36555;Dbxref=GenBank:WP_000828345.1;Name=WP_000828345.1;gbkey=CDS;gene=argP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461980.1;locus_tag=CFSAN001082_RS36555;product=DNA-binding transcriptional regulator ArgP;protein_id=WP_000828345.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	14864	15610	.	-	.	ID=gene-CFSAN001082_RS36560;Name=CFSAN001082_RS36560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36560;old_locus_tag=CFSAN001082_12873
NZ_APAH01000255.1	Protein Homology	CDS	14864	15610	.	-	0	ID=cds-WP_000669853.1;Parent=gene-CFSAN001082_RS36560;Dbxref=GenBank:WP_000669853.1;Name=WP_000669853.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461981.1;locus_tag=CFSAN001082_RS36560;product=oxidative stress defense protein;protein_id=WP_000669853.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	15704	16339	.	-	.	ID=gene-CFSAN001082_RS36565;Name=argO;gbkey=Gene;gene=argO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36565;old_locus_tag=CFSAN001082_12878
NZ_APAH01000255.1	Protein Homology	CDS	15704	16339	.	-	0	ID=cds-WP_023254421.1;Parent=gene-CFSAN001082_RS36565;Dbxref=GenBank:WP_023254421.1;Name=WP_023254421.1;Ontology_term=GO:1903826,GO:0061459,GO:0016020;gbkey=CDS;gene=argO;go_component=membrane|0016020||IEA;go_function=L-arginine transmembrane transporter activity|0061459||IEA;go_process=L-arginine transmembrane transport|1903826||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461982.1;locus_tag=CFSAN001082_RS36565;product=arginine exporter ArgO;protein_id=WP_023254421.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	16527	17387	.	-	.	ID=gene-CFSAN001082_RS36570;Name=CFSAN001082_RS36570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36570;old_locus_tag=CFSAN001082_12883
NZ_APAH01000255.1	Protein Homology	CDS	16527	17387	.	-	0	ID=cds-WP_000389833.1;Parent=gene-CFSAN001082_RS36570;Dbxref=GenBank:WP_000389833.1;Name=WP_000389833.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461983.1;locus_tag=CFSAN001082_RS36570;product=small-conductance mechanosensitive channel MscS;protein_id=WP_000389833.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	17620	18699	.	-	.	ID=gene-CFSAN001082_RS36575;Name=fbaA;gbkey=Gene;gene=fbaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36575;old_locus_tag=CFSAN001082_12888
NZ_APAH01000255.1	Protein Homology	CDS	17620	18699	.	-	0	ID=cds-WP_000034386.1;Parent=gene-CFSAN001082_RS36575;Dbxref=GenBank:WP_000034386.1;Name=WP_000034386.1;Ontology_term=GO:0005975,GO:0006096,GO:0004332,GO:0008270;gbkey=CDS;gene=fbaA;go_function=fructose-bisphosphate aldolase activity|0004332||IEA,zinc ion binding|0008270||IEA;go_process=carbohydrate metabolic process|0005975||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016505616.1;locus_tag=CFSAN001082_RS36575;product=class II fructose-bisphosphate aldolase;protein_id=WP_000034386.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	18801	19964	.	-	.	ID=gene-CFSAN001082_RS36580;Name=pgk;gbkey=Gene;gene=pgk;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36580;old_locus_tag=CFSAN001082_12893
NZ_APAH01000255.1	Protein Homology	CDS	18801	19964	.	-	0	ID=cds-WP_000111274.1;Parent=gene-CFSAN001082_RS36580;Dbxref=GenBank:WP_000111274.1;Name=WP_000111274.1;gbkey=CDS;gene=pgk;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005761248.1;locus_tag=CFSAN001082_RS36580;product=phosphoglycerate kinase;protein_id=WP_000111274.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	19986	21032	.	-	.	ID=gene-CFSAN001082_RS36585;Name=epd;gbkey=Gene;gene=epd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36585;old_locus_tag=CFSAN001082_12898
NZ_APAH01000255.1	Protein Homology	CDS	19986	21032	.	-	0	ID=cds-WP_023254422.1;Parent=gene-CFSAN001082_RS36585;Dbxref=GenBank:WP_023254422.1;Name=WP_023254422.1;Ontology_term=GO:0042823,GO:0048001,GO:0051287;gbkey=CDS;gene=epd;go_function=erythrose-4-phosphate dehydrogenase activity|0048001||IEA,NAD binding|0051287||IEA;go_process=pyridoxal phosphate biosynthetic process|0042823||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461986.1;locus_tag=CFSAN001082_RS36585;product=erythrose-4-phosphate dehydrogenase;protein_id=WP_023254422.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	21406	21831	.	+	.	ID=gene-CFSAN001082_RS36590;Name=CFSAN001082_RS36590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36590;old_locus_tag=CFSAN001082_12903
NZ_APAH01000255.1	Protein Homology	CDS	21406	21831	.	+	0	ID=cds-WP_023254423.1;Parent=gene-CFSAN001082_RS36590;Dbxref=GenBank:WP_023254423.1;Name=WP_023254423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461987.1;locus_tag=CFSAN001082_RS36590;product=PPC domain-containing DNA-binding protein;protein_id=WP_023254423.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	21857	22435	.	+	.	ID=gene-CFSAN001082_RS36595;Name=CFSAN001082_RS36595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36595;old_locus_tag=CFSAN001082_12908
NZ_APAH01000255.1	Protein Homology	CDS	21857	22435	.	+	0	ID=cds-WP_000124001.1;Parent=gene-CFSAN001082_RS36595;Dbxref=GenBank:WP_000124001.1;Name=WP_000124001.1;Ontology_term=GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461988.1;locus_tag=CFSAN001082_RS36595;product=ECF transporter S component;protein_id=WP_000124001.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	22436	23143	.	+	.	ID=gene-CFSAN001082_RS36600;Name=CFSAN001082_RS36600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36600;old_locus_tag=CFSAN001082_12913
NZ_APAH01000255.1	Protein Homology	CDS	22436	23143	.	+	0	ID=cds-WP_000553271.1;Parent=gene-CFSAN001082_RS36600;Dbxref=GenBank:WP_000553271.1;Name=WP_000553271.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461989.1;locus_tag=CFSAN001082_RS36600;product=energy-coupling factor transporter transmembrane component T;protein_id=WP_000553271.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	23131	23808	.	+	.	ID=gene-CFSAN001082_RS36605;Name=CFSAN001082_RS36605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36605;old_locus_tag=CFSAN001082_12918
NZ_APAH01000255.1	Protein Homology	CDS	23131	23808	.	+	0	ID=cds-WP_023254424.1;Parent=gene-CFSAN001082_RS36605;Dbxref=GenBank:WP_023254424.1;Name=WP_023254424.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461990.1;locus_tag=CFSAN001082_RS36605;product=ABC transporter ATP-binding protein;protein_id=WP_023254424.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	23802	24491	.	+	.	ID=gene-CFSAN001082_RS36610;Name=CFSAN001082_RS36610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36610;old_locus_tag=CFSAN001082_12923
NZ_APAH01000255.1	Protein Homology	CDS	23802	24491	.	+	0	ID=cds-WP_023254425.1;Parent=gene-CFSAN001082_RS36610;Dbxref=GenBank:WP_023254425.1;Name=WP_023254425.1;Ontology_term=GO:0055085,GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000956937.1;locus_tag=CFSAN001082_RS36610;product=energy-coupling factor ABC transporter ATP-binding protein;protein_id=WP_023254425.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	24460	25176	.	-	.	ID=gene-CFSAN001082_RS36615;Name=CFSAN001082_RS36615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36615;old_locus_tag=CFSAN001082_12928
NZ_APAH01000255.1	Protein Homology	CDS	24460	25176	.	-	0	ID=cds-WP_023254426.1;Parent=gene-CFSAN001082_RS36615;Dbxref=GenBank:WP_023254426.1;Name=WP_023254426.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015406292.1;locus_tag=CFSAN001082_RS36615;product=nucleoside/nucleotide kinase family protein;protein_id=WP_023254426.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	25173	25682	.	-	.	ID=gene-CFSAN001082_RS36620;Name=CFSAN001082_RS36620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36620;old_locus_tag=CFSAN001082_12933
NZ_APAH01000255.1	Protein Homology	CDS	25173	25682	.	-	0	ID=cds-WP_023216281.1;Parent=gene-CFSAN001082_RS36620;Dbxref=GenBank:WP_023216281.1;Name=WP_023216281.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708693.1;locus_tag=CFSAN001082_RS36620;product=MltR family transcriptional regulator;protein_id=WP_023216281.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	25896	26867	.	-	.	ID=gene-CFSAN001082_RS36625;Name=glpX;gbkey=Gene;gene=glpX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36625;old_locus_tag=CFSAN001082_12938
NZ_APAH01000255.1	Protein Homology	CDS	25896	26867	.	-	0	ID=cds-WP_001519647.1;Parent=gene-CFSAN001082_RS36625;Dbxref=GenBank:WP_001519647.1;Name=WP_001519647.1;Ontology_term=GO:0006071,GO:0006094,GO:0042132;gbkey=CDS;gene=glpX;go_function=fructose 1%2C6-bisphosphate 1-phosphatase activity|0042132||IEA;go_process=glycerol metabolic process|0006071||IEA,gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016154382.1;locus_tag=CFSAN001082_RS36625;product=class II fructose-bisphosphatase;protein_id=WP_001519647.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	26864	28138	.	-	.	ID=gene-CFSAN001082_RS36630;Name=CFSAN001082_RS36630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36630;old_locus_tag=CFSAN001082_12943
NZ_APAH01000255.1	Protein Homology	CDS	26864	28138	.	-	0	ID=cds-WP_000853174.1;Parent=gene-CFSAN001082_RS36630;Dbxref=GenBank:WP_000853174.1;Name=WP_000853174.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000853171.1;locus_tag=CFSAN001082_RS36630;product=zinc-binding dehydrogenase;protein_id=WP_000853174.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	28162	29541	.	-	.	ID=gene-CFSAN001082_RS36635;Name=CFSAN001082_RS36635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36635;old_locus_tag=CFSAN001082_12948
NZ_APAH01000255.1	Protein Homology	CDS	28162	29541	.	-	0	ID=cds-WP_000400413.1;Parent=gene-CFSAN001082_RS36635;Dbxref=GenBank:WP_000400413.1;Name=WP_000400413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000400412.1;locus_tag=CFSAN001082_RS36635;product=PTS mannitol transporter subunit IICB;protein_id=WP_000400413.1;transl_table=11
NZ_APAH01000255.1	RefSeq	gene	29569	29886	.	-	.	ID=gene-CFSAN001082_RS36640;Name=cmtB;end_range=29886,.;gbkey=Gene;gene=cmtB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36640;old_locus_tag=CFSAN001082_12953;partial=true
NZ_APAH01000255.1	Protein Homology	CDS	29569	29886	.	-	0	ID=cds-WP_031612868.1;Parent=gene-CFSAN001082_RS36640;Dbxref=GenBank:WP_031612868.1;Name=WP_031612868.1;end_range=29886,.;gbkey=CDS;gene=cmtB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001518319.1;locus_tag=CFSAN001082_RS36640;partial=true;product=PTS mannitol transporter subunit IIA;protein_id=WP_031612868.1;transl_table=11
##sequence-region NZ_APAH01000256.1 1 20502
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000256.1	RefSeq	region	1	20502	.	+	.	ID=NZ_APAH01000256.1:1..20502;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000256.1	RefSeq	gene	126	746	.	+	.	ID=gene-CFSAN001082_RS36645;Name=CFSAN001082_RS36645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36645;old_locus_tag=CFSAN001082_12958
NZ_APAH01000256.1	Protein Homology	CDS	126	746	.	+	0	ID=cds-WP_024150297.1;Parent=gene-CFSAN001082_RS36645;Dbxref=GenBank:WP_024150297.1;Name=WP_024150297.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459103.1;locus_tag=CFSAN001082_RS36645;product=YdcF family protein;protein_id=WP_024150297.1;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	790	3141	.	+	.	ID=gene-CFSAN001082_RS36650;Name=polB;gbkey=Gene;gene=polB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36650;old_locus_tag=CFSAN001082_12963
NZ_APAH01000256.1	Protein Homology	CDS	790	3141	.	+	0	ID=cds-WP_023254429.1;Parent=gene-CFSAN001082_RS36650;Dbxref=GenBank:WP_023254429.1;Name=WP_023254429.1;Ontology_term=GO:0003677,GO:0003887;gbkey=CDS;gene=polB;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459102.1;locus_tag=CFSAN001082_RS36650;product=DNA polymerase II;protein_id=WP_023254429.1;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	3315	6221	.	+	.	ID=gene-CFSAN001082_RS36655;Name=rapA;gbkey=Gene;gene=rapA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36655;old_locus_tag=CFSAN001082_12968
NZ_APAH01000256.1	Protein Homology	CDS	3315	6221	.	+	0	ID=cds-WP_001116966.1;Parent=gene-CFSAN001082_RS36655;Dbxref=GenBank:WP_001116966.1;Name=WP_001116966.1;Ontology_term=GO:0006355,GO:0005524,GO:0016817,GO:0140658;gbkey=CDS;gene=rapA;go_function=ATP binding|0005524||IEA,hydrolase activity%2C acting on acid anhydrides|0016817||IEA,ATP-dependent chromatin remodeler activity|0140658||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001117023.1;locus_tag=CFSAN001082_RS36655;product=RNA polymerase-associated protein RapA;protein_id=WP_001116966.1;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	6233	6892	.	+	.	ID=gene-CFSAN001082_RS36660;Name=rluA;gbkey=Gene;gene=rluA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36660;old_locus_tag=CFSAN001082_12973
NZ_APAH01000256.1	Protein Homology	CDS	6233	6892	.	+	0	ID=cds-WP_000525198.1;Parent=gene-CFSAN001082_RS36660;Dbxref=GenBank:WP_000525198.1;Name=WP_000525198.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=rluA;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459100.1;locus_tag=CFSAN001082_RS36660;product=bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA;protein_id=WP_000525198.1;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	6987	7799	.	-	.	ID=gene-CFSAN001082_RS36665;Name=djlA;gbkey=Gene;gene=djlA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36665;old_locus_tag=CFSAN001082_12978
NZ_APAH01000256.1	Protein Homology	CDS	6987	7799	.	-	0	ID=cds-WP_001200595.1;Parent=gene-CFSAN001082_RS36665;Dbxref=GenBank:WP_001200595.1;Name=WP_001200595.1;Ontology_term=GO:0051087;gbkey=CDS;gene=djlA;go_function=protein-folding chaperone binding|0051087||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459099.1;locus_tag=CFSAN001082_RS36665;product=co-chaperone DjlA;protein_id=WP_001200595.1;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	8053	10413	.	+	.	ID=gene-CFSAN001082_RS36670;Name=lptD;gbkey=Gene;gene=lptD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36670;old_locus_tag=CFSAN001082_12983
NZ_APAH01000256.1	Protein Homology	CDS	8053	10413	.	+	0	ID=cds-WP_000746119.1;Parent=gene-CFSAN001082_RS36670;Dbxref=GenBank:WP_000746119.1;Name=WP_000746119.1;Ontology_term=GO:0015920,GO:0043165,GO:0019867;gbkey=CDS;gene=lptD;go_component=outer membrane|0019867||IEA;go_process=lipopolysaccharide transport|0015920||IEA,Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459098.1;locus_tag=CFSAN001082_RS36670;product=LPS assembly protein LptD;protein_id=WP_000746119.1;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	10467	11753	.	+	.	ID=gene-CFSAN001082_RS36675;Name=surA;gbkey=Gene;gene=surA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36675;old_locus_tag=CFSAN001082_12988
NZ_APAH01000256.1	Protein Homology	CDS	10467	11753	.	+	0	ID=cds-WP_000800482.1;Parent=gene-CFSAN001082_RS36675;Dbxref=GenBank:WP_000800482.1;Name=WP_000800482.1;Ontology_term=GO:0006457,GO:0043165,GO:0050821,GO:0060274,GO:0003755,GO:0042277,GO:0051082,GO:0030288;gbkey=CDS;gene=surA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,peptide binding|0042277||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA,Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA,protein stabilization|0050821||IEA,maintenance of stationary phase|0060274||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459097.1;locus_tag=CFSAN001082_RS36675;product=peptidylprolyl isomerase SurA;protein_id=WP_000800482.1;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	11753	12742	.	+	.	ID=gene-CFSAN001082_RS36680;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36680;old_locus_tag=CFSAN001082_12993
NZ_APAH01000256.1	Protein Homology	CDS	11753	12742	.	+	0	ID=cds-WP_023254430.1;Parent=gene-CFSAN001082_RS36680;Dbxref=GenBank:WP_023254430.1;Name=WP_023254430.1;Ontology_term=GO:0008615,GO:0050570;gbkey=CDS;gene=pdxA;go_function=4-hydroxythreonine-4-phosphate dehydrogenase activity|0050570||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459096.1;locus_tag=CFSAN001082_RS36680;product=4-hydroxythreonine-4-phosphate dehydrogenase PdxA;protein_id=WP_023254430.1;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	12739	13560	.	+	.	ID=gene-CFSAN001082_RS36685;Name=rsmA;gbkey=Gene;gene=rsmA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36685;old_locus_tag=CFSAN001082_12998
NZ_APAH01000256.1	Protein Homology	CDS	12739	13560	.	+	0	ID=cds-WP_001065397.1;Parent=gene-CFSAN001082_RS36685;Dbxref=GenBank:WP_001065397.1;Name=WP_001065397.1;Ontology_term=GO:0006364,GO:0000179;gbkey=CDS;gene=rsmA;go_function=rRNA (adenine-N6%2CN6-)-dimethyltransferase activity|0000179||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459095.1;locus_tag=CFSAN001082_RS36685;product=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA;protein_id=WP_001065397.1;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	13563	13940	.	+	.	ID=gene-CFSAN001082_RS36690;Name=apaG;gbkey=Gene;gene=apaG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36690;old_locus_tag=CFSAN001082_13003
NZ_APAH01000256.1	Protein Homology	CDS	13563	13940	.	+	0	ID=cds-WP_000610894.1;Parent=gene-CFSAN001082_RS36690;Dbxref=GenBank:WP_000610894.1;Name=WP_000610894.1;gbkey=CDS;gene=apaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459094.1;locus_tag=CFSAN001082_RS36690;product=Co2+/Mg2+ efflux protein ApaG;protein_id=WP_000610894.1;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	13951	14799	.	+	.	ID=gene-CFSAN001082_RS36695;Name=apaH;gbkey=Gene;gene=apaH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36695;old_locus_tag=CFSAN001082_13008
NZ_APAH01000256.1	Protein Homology	CDS	13951	14799	.	+	0	ID=cds-WP_000257211.1;Parent=gene-CFSAN001082_RS36695;Dbxref=GenBank:WP_000257211.1;Name=WP_000257211.1;Ontology_term=GO:0008803;gbkey=CDS;gene=apaH;go_function=bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity|0008803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459093.1;locus_tag=CFSAN001082_RS36695;product=bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH;protein_id=WP_000257211.1;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	14905	15384	.	-	.	ID=gene-CFSAN001082_RS36700;Name=folA;gbkey=Gene;gene=folA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36700;old_locus_tag=CFSAN001082_13013
NZ_APAH01000256.1	Protein Homology	CDS	14905	15384	.	-	0	ID=cds-WP_000624379.1;Parent=gene-CFSAN001082_RS36700;Dbxref=GenBank:WP_000624379.1;Name=WP_000624379.1;Ontology_term=GO:0046654,GO:0004146;gbkey=CDS;gene=folA;go_function=dihydrofolate reductase activity|0004146||IEA;go_process=tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020456510.1;locus_tag=CFSAN001082_RS36700;product=type 3 dihydrofolate reductase;protein_id=WP_000624379.1;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	15583	17445	.	-	.	ID=gene-CFSAN001082_RS36705;Name=kefC;gbkey=Gene;gene=kefC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36705;old_locus_tag=CFSAN001082_13018
NZ_APAH01000256.1	Protein Homology	CDS	15583	17445	.	-	0	ID=cds-WP_023254431.1;Parent=gene-CFSAN001082_RS36705;Dbxref=GenBank:WP_023254431.1;Name=WP_023254431.1;Ontology_term=GO:0006813,GO:0015503;gbkey=CDS;gene=kefC;go_function=glutathione-regulated potassium exporter activity|0015503||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459091.1;locus_tag=CFSAN001082_RS36705;product=glutathione-regulated potassium-efflux system protein KefC;protein_id=WP_023254431.1;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	17438	17968	.	-	.	ID=gene-CFSAN001082_RS36710;Name=kefF;gbkey=Gene;gene=kefF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36710;old_locus_tag=CFSAN001082_13023
NZ_APAH01000256.1	Protein Homology	CDS	17438	17968	.	-	0	ID=cds-WP_000600707.1;Parent=gene-CFSAN001082_RS36710;Dbxref=GenBank:WP_000600707.1;Name=WP_000600707.1;Ontology_term=GO:0006813;gbkey=CDS;gene=kefF;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459090.1;locus_tag=CFSAN001082_RS36710;product=glutathione-regulated potassium-efflux system oxidoreductase KefF;protein_id=WP_000600707.1;transl_table=11
NZ_APAH01000256.1	RefSeq	pseudogene	18090	18170	.	+	.	ID=gene-CFSAN001082_RS48920;Name=CFSAN001082_RS48920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48920;partial=true;pseudo=true;start_range=.,18090
NZ_APAH01000256.1	Protein Homology	CDS	18090	18170	.	+	0	ID=cds-CFSAN001082_RS48920;Parent=gene-CFSAN001082_RS48920;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459075.1;locus_tag=CFSAN001082_RS48920;partial=true;product=hypothetical protein;pseudo=true;start_range=.,18090;transl_table=11
NZ_APAH01000256.1	RefSeq	gene	18521	20410	.	-	.	ID=gene-CFSAN001082_RS36715;Name=CFSAN001082_RS36715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36715;old_locus_tag=CFSAN001082_13028
NZ_APAH01000256.1	Protein Homology	CDS	18521	20410	.	-	0	ID=cds-WP_023254432.1;Parent=gene-CFSAN001082_RS36715;Dbxref=GenBank:WP_023254432.1;Name=WP_023254432.1;Ontology_term=GO:0008484;gbkey=CDS;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459089.1;locus_tag=CFSAN001082_RS36715;product=sulfatase-like hydrolase/transferase;protein_id=WP_023254432.1;transl_table=11
##sequence-region NZ_APAH01000257.1 1 336
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000257.1	RefSeq	region	1	336	.	+	.	ID=NZ_APAH01000257.1:1..336;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000257.1	RefSeq	pseudogene	63	336	.	+	.	ID=gene-CFSAN001082_RS47160;Name=CFSAN001082_RS47160;end_range=336,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47160;old_locus_tag=CFSAN001082_13033;partial=true;pseudo=true
NZ_APAH01000257.1	GeneMarkS-2+	CDS	63	336	.	+	0	ID=cds-CFSAN001082_RS47160;Parent=gene-CFSAN001082_RS47160;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=336,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS47160;partial=true;product=glycosyltransferase;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000258.1 1 58363
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000258.1	RefSeq	region	1	58363	.	+	.	ID=NZ_APAH01000258.1:1..58363;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000258.1	RefSeq	gene	1	425	.	-	.	ID=gene-CFSAN001082_RS36720;Name=CFSAN001082_RS36720;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS36720;old_locus_tag=CFSAN001082_r13305;partial=true;start_range=.,1
NZ_APAH01000258.1	cmsearch	rRNA	1	425	.	-	.	ID=rna-CFSAN001082_RS36720;Parent=gene-CFSAN001082_RS36720;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS36720;partial=true;product=16S ribosomal RNA;start_range=.,1
NZ_APAH01000258.1	cmsearch	exon	1	425	.	-	.	ID=exon-CFSAN001082_RS36720-1;Parent=rna-CFSAN001082_RS36720;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS36720;partial=true;product=16S ribosomal RNA;start_range=.,1
NZ_APAH01000258.1	RefSeq	gene	796	1362	.	-	.	ID=gene-CFSAN001082_RS36725;Name=gmhB;gbkey=Gene;gene=gmhB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36725;old_locus_tag=CFSAN001082_13038
NZ_APAH01000258.1	Protein Homology	CDS	796	1362	.	-	0	ID=cds-WP_001140158.1;Parent=gene-CFSAN001082_RS36725;Dbxref=GenBank:WP_001140158.1;Name=WP_001140158.1;Ontology_term=GO:0005975,GO:0016791;gbkey=CDS;gene=gmhB;go_function=phosphatase activity|0016791||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459252.1;locus_tag=CFSAN001082_RS36725;product=D-glycero-beta-D-manno-heptose 1%2C7-bisphosphate 7-phosphatase;protein_id=WP_001140158.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	1552	2583	.	+	.	ID=gene-CFSAN001082_RS36730;Name=metN;gbkey=Gene;gene=metN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36730;old_locus_tag=CFSAN001082_13043
NZ_APAH01000258.1	Protein Homology	CDS	1552	2583	.	+	0	ID=cds-WP_000594018.1;Parent=gene-CFSAN001082_RS36730;Dbxref=GenBank:WP_000594018.1;Name=WP_000594018.1;Ontology_term=GO:0048473,GO:0005524,GO:0033232,GO:0009276;gbkey=CDS;gene=metN;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA;go_function=ATP binding|0005524||IEA,ABC-type D-methionine transporter activity|0033232||IEA;go_process=D-methionine transmembrane transport|0048473||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014168731.1;locus_tag=CFSAN001082_RS36730;product=methionine ABC transporter ATP-binding protein MetN;protein_id=WP_000594018.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	2576	3229	.	+	.	ID=gene-CFSAN001082_RS36735;Name=CFSAN001082_RS36735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36735;old_locus_tag=CFSAN001082_13048
NZ_APAH01000258.1	Protein Homology	CDS	2576	3229	.	+	0	ID=cds-WP_001287486.1;Parent=gene-CFSAN001082_RS36735;Dbxref=GenBank:WP_001287486.1;Name=WP_001287486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132073.1;locus_tag=CFSAN001082_RS36735;product=methionine ABC transporter permease MetI;protein_id=WP_001287486.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	3268	4083	.	+	.	ID=gene-CFSAN001082_RS36740;Name=metQ;gbkey=Gene;gene=metQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36740;old_locus_tag=CFSAN001082_13053
NZ_APAH01000258.1	Protein Homology	CDS	3268	4083	.	+	0	ID=cds-WP_000874215.1;Parent=gene-CFSAN001082_RS36740;Dbxref=GenBank:WP_000874215.1;Name=WP_000874215.1;gbkey=CDS;gene=metQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459249.1;locus_tag=CFSAN001082_RS36740;product=methionine ABC transporter substrate-binding lipoprotein MetQ;protein_id=WP_000874215.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	4202	4606	.	+	.	ID=gene-CFSAN001082_RS36745;Name=rcsF;gbkey=Gene;gene=rcsF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36745;old_locus_tag=CFSAN001082_13058
NZ_APAH01000258.1	Protein Homology	CDS	4202	4606	.	+	0	ID=cds-WP_001202315.1;Parent=gene-CFSAN001082_RS36745;Dbxref=GenBank:WP_001202315.1;Name=WP_001202315.1;gbkey=CDS;gene=rcsF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459248.1;locus_tag=CFSAN001082_RS36745;product=Rcs stress response system protein RcsF;protein_id=WP_001202315.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	4603	5310	.	+	.	ID=gene-CFSAN001082_RS36750;Name=tsaA;gbkey=Gene;gene=tsaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36750;old_locus_tag=CFSAN001082_13063
NZ_APAH01000258.1	Protein Homology	CDS	4603	5310	.	+	0	ID=cds-WP_000093986.1;Parent=gene-CFSAN001082_RS36750;Dbxref=GenBank:WP_000093986.1;Name=WP_000093986.1;Ontology_term=GO:0006400,GO:0008757,GO:0005737;gbkey=CDS;gene=tsaA;go_component=cytoplasm|0005737||IEA;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459247.1;locus_tag=CFSAN001082_RS36750;product=tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO;protein_id=WP_000093986.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	5420	7138	.	+	.	ID=gene-CFSAN001082_RS36755;Name=proS;gbkey=Gene;gene=proS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36755;old_locus_tag=CFSAN001082_13068
NZ_APAH01000258.1	Protein Homology	CDS	5420	7138	.	+	0	ID=cds-WP_001260688.1;Parent=gene-CFSAN001082_RS36755;Dbxref=GenBank:WP_001260688.1;Name=WP_001260688.1;Ontology_term=GO:0006433,GO:0004827,GO:0005524,GO:0005737;gbkey=CDS;gene=proS;go_component=cytoplasm|0005737||IEA;go_function=proline-tRNA ligase activity|0004827||IEA,ATP binding|0005524||IEA;go_process=prolyl-tRNA aminoacylation|0006433||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133963.1;locus_tag=CFSAN001082_RS36755;product=proline--tRNA ligase;protein_id=WP_001260688.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	7212	7913	.	-	.	ID=gene-CFSAN001082_RS36760;Name=nlpE;gbkey=Gene;gene=nlpE;gene_biotype=protein_coding;gene_synonym=cutF;locus_tag=CFSAN001082_RS36760;old_locus_tag=CFSAN001082_13073
NZ_APAH01000258.1	Protein Homology	CDS	7212	7913	.	-	0	ID=cds-WP_000252575.1;Parent=gene-CFSAN001082_RS36760;Dbxref=GenBank:WP_000252575.1;Name=WP_000252575.1;Note=NlpE%2C an outer membrane lipoprotein%2C interacts directly with CpxA%2C the sensor histidine kinase of the Cpx system for response to envelope stress.;gbkey=CDS;gene=nlpE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006899150.1;locus_tag=CFSAN001082_RS36760;product=envelope stress response activation lipoprotein NlpE;protein_id=WP_000252575.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	7945	8367	.	-	.	ID=gene-CFSAN001082_RS36765;Name=arfB;gbkey=Gene;gene=arfB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36765;old_locus_tag=CFSAN001082_13078
NZ_APAH01000258.1	Protein Homology	CDS	7945	8367	.	-	0	ID=cds-WP_000560527.1;Parent=gene-CFSAN001082_RS36765;Dbxref=GenBank:WP_000560527.1;Name=WP_000560527.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=arfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459245.1;locus_tag=CFSAN001082_RS36765;product=alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB;protein_id=WP_000560527.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	8364	8909	.	-	.	ID=gene-CFSAN001082_RS36770;Name=CFSAN001082_RS36770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36770;old_locus_tag=CFSAN001082_13083
NZ_APAH01000258.1	Protein Homology	CDS	8364	8909	.	-	0	ID=cds-WP_023202550.1;Parent=gene-CFSAN001082_RS36770;Dbxref=GenBank:WP_023202550.1;Name=WP_023202550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459244.1;locus_tag=CFSAN001082_RS36770;product=YaeQ family protein;protein_id=WP_023202550.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	9107	9307	.	+	.	ID=gene-CFSAN001082_RS36775;Name=CFSAN001082_RS36775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36775;old_locus_tag=CFSAN001082_13088
NZ_APAH01000258.1	Protein Homology	CDS	9107	9307	.	+	0	ID=cds-WP_001518678.1;Parent=gene-CFSAN001082_RS36775;Dbxref=GenBank:WP_001518678.1;Name=WP_001518678.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133967.1;locus_tag=CFSAN001082_RS36775;product=YaeP family protein;protein_id=WP_001518678.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	9294	9554	.	+	.	ID=gene-CFSAN001082_RS36780;Name=rof;gbkey=Gene;gene=rof;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36780;old_locus_tag=CFSAN001082_13093
NZ_APAH01000258.1	Protein Homology	CDS	9294	9554	.	+	0	ID=cds-WP_000062330.1;Parent=gene-CFSAN001082_RS36780;Dbxref=GenBank:WP_000062330.1;Name=WP_000062330.1;gbkey=CDS;gene=rof;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459242.1;locus_tag=CFSAN001082_RS36780;product=Rho-binding antiterminator;protein_id=WP_000062330.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	9638	10930	.	-	.	ID=gene-CFSAN001082_RS36785;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36785;old_locus_tag=CFSAN001082_13098
NZ_APAH01000258.1	Protein Homology	CDS	9638	10930	.	-	0	ID=cds-WP_023254434.1;Parent=gene-CFSAN001082_RS36785;Dbxref=GenBank:WP_023254434.1;Name=WP_023254434.1;Ontology_term=GO:0008033,GO:0000166,GO:0005524,GO:0016879;gbkey=CDS;gene=tilS;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA,ligase activity%2C forming carbon-nitrogen bonds|0016879||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459241.1;locus_tag=CFSAN001082_RS36785;product=tRNA lysidine(34) synthetase TilS;protein_id=WP_023254434.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	10993	11382	.	-	.	ID=gene-CFSAN001082_RS36790;Name=CFSAN001082_RS36790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36790;old_locus_tag=CFSAN001082_13103
NZ_APAH01000258.1	Protein Homology	CDS	10993	11382	.	-	0	ID=cds-WP_000901088.1;Parent=gene-CFSAN001082_RS36790;Dbxref=GenBank:WP_000901088.1;Name=WP_000901088.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459240.1;locus_tag=CFSAN001082_RS36790;product=VOC family protein;protein_id=WP_000901088.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	11438	13579	.	-	.	ID=gene-CFSAN001082_RS36795;Name=ldcC;gbkey=Gene;gene=ldcC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36795;old_locus_tag=CFSAN001082_13108
NZ_APAH01000258.1	Protein Homology	CDS	11438	13579	.	-	0	ID=cds-WP_001021044.1;Parent=gene-CFSAN001082_RS36795;Dbxref=GenBank:WP_001021044.1;Name=WP_001021044.1;gbkey=CDS;gene=ldcC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459239.1;locus_tag=CFSAN001082_RS36795;product=lysine decarboxylase LdcC;protein_id=WP_001021044.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	13655	15418	.	-	.	ID=gene-CFSAN001082_RS36800;Name=CFSAN001082_RS36800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36800;old_locus_tag=CFSAN001082_13113
NZ_APAH01000258.1	Protein Homology	CDS	13655	15418	.	-	0	ID=cds-WP_023254435.1;Parent=gene-CFSAN001082_RS36800;Dbxref=GenBank:WP_023254435.1;Name=WP_023254435.1;Ontology_term=GO:0006032,GO:0016998,GO:0004568;gbkey=CDS;go_function=chitinase activity|0004568||IEA;go_process=chitin catabolic process|0006032||IEA,cell wall macromolecule catabolic process|0016998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459238.1;locus_tag=CFSAN001082_RS36800;product=chitinase;protein_id=WP_023254435.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	15598	16557	.	-	.	ID=gene-CFSAN001082_RS36805;Name=accA;gbkey=Gene;gene=accA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36805;old_locus_tag=CFSAN001082_13118
NZ_APAH01000258.1	Protein Homology	CDS	15598	16557	.	-	0	ID=cds-WP_000055753.1;Parent=gene-CFSAN001082_RS36805;Dbxref=GenBank:WP_000055753.1;Name=WP_000055753.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accA;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132091.1;locus_tag=CFSAN001082_RS36805;product=acetyl-CoA carboxylase carboxyl transferase subunit alpha;protein_id=WP_000055753.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	16570	20052	.	-	.	ID=gene-CFSAN001082_RS36810;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36810;old_locus_tag=CFSAN001082_13123
NZ_APAH01000258.1	Protein Homology	CDS	16570	20052	.	-	0	ID=cds-WP_001294834.1;Parent=gene-CFSAN001082_RS36810;Dbxref=GenBank:WP_001294834.1;Name=WP_001294834.1;Ontology_term=GO:0006260,GO:0003676,GO:0008408;gbkey=CDS;gene=dnaE;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459236.1;locus_tag=CFSAN001082_RS36810;product=DNA polymerase III subunit alpha;protein_id=WP_001294834.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	20076	20672	.	-	.	ID=gene-CFSAN001082_RS36815;Name=rnhB;gbkey=Gene;gene=rnhB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36815;old_locus_tag=CFSAN001082_13128
NZ_APAH01000258.1	Protein Homology	CDS	20076	20672	.	-	0	ID=cds-WP_000569412.1;Parent=gene-CFSAN001082_RS36815;Dbxref=GenBank:WP_000569412.1;Name=WP_000569412.1;Ontology_term=GO:0003723,GO:0004523;gbkey=CDS;gene=rnhB;go_function=RNA binding|0003723||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459235.1;locus_tag=CFSAN001082_RS36815;product=ribonuclease HII;protein_id=WP_000569412.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	20669	21817	.	-	.	ID=gene-CFSAN001082_RS36820;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36820;old_locus_tag=CFSAN001082_13133
NZ_APAH01000258.1	Protein Homology	CDS	20669	21817	.	-	0	ID=cds-WP_000741216.1;Parent=gene-CFSAN001082_RS36820;Dbxref=GenBank:WP_000741216.1;Name=WP_000741216.1;Ontology_term=GO:0009245,GO:0008915;gbkey=CDS;gene=lpxB;go_function=lipid-A-disaccharide synthase activity|0008915||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459234.1;locus_tag=CFSAN001082_RS36820;product=lipid-A-disaccharide synthase;protein_id=WP_000741216.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	21817	22605	.	-	.	ID=gene-CFSAN001082_RS36825;Name=lpxA;gbkey=Gene;gene=lpxA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36825;old_locus_tag=CFSAN001082_13138
NZ_APAH01000258.1	Protein Homology	CDS	21817	22605	.	-	0	ID=cds-WP_000565950.1;Parent=gene-CFSAN001082_RS36825;Dbxref=GenBank:WP_000565950.1;Name=WP_000565950.1;Ontology_term=GO:0008610,GO:0008780;gbkey=CDS;gene=lpxA;go_function=acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity|0008780||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132096.1;locus_tag=CFSAN001082_RS36825;product=acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase;protein_id=WP_000565950.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	22609	23064	.	-	.	ID=gene-CFSAN001082_RS36830;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36830;old_locus_tag=CFSAN001082_13143
NZ_APAH01000258.1	Protein Homology	CDS	22609	23064	.	-	0	ID=cds-WP_000210741.1;Parent=gene-CFSAN001082_RS36830;Dbxref=GenBank:WP_000210741.1;Name=WP_000210741.1;gbkey=CDS;gene=fabZ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000210741.1;locus_tag=CFSAN001082_RS36830;product=3-hydroxyacyl-ACP dehydratase FabZ;protein_id=WP_000210741.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	23170	24195	.	-	.	ID=gene-CFSAN001082_RS36835;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36835;old_locus_tag=CFSAN001082_13148
NZ_APAH01000258.1	Protein Homology	CDS	23170	24195	.	-	0	ID=cds-WP_001139265.1;Parent=gene-CFSAN001082_RS36835;Dbxref=GenBank:WP_001139265.1;Name=WP_001139265.1;Ontology_term=GO:0009245,GO:0016410;gbkey=CDS;gene=lpxD;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132101.1;locus_tag=CFSAN001082_RS36835;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_001139265.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	24199	24684	.	-	.	ID=gene-CFSAN001082_RS36840;Name=skp;gbkey=Gene;gene=skp;gene_biotype=protein_coding;gene_synonym=hlpA,ompH;locus_tag=CFSAN001082_RS36840;old_locus_tag=CFSAN001082_13153
NZ_APAH01000258.1	Protein Homology	CDS	24199	24684	.	-	0	ID=cds-WP_000758966.1;Parent=gene-CFSAN001082_RS36840;Dbxref=GenBank:WP_000758966.1;Name=WP_000758966.1;gbkey=CDS;gene=skp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459230.1;locus_tag=CFSAN001082_RS36840;product=molecular chaperone Skp;protein_id=WP_000758966.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	24807	27221	.	-	.	ID=gene-CFSAN001082_RS36845;Name=bamA;gbkey=Gene;gene=bamA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36845;old_locus_tag=CFSAN001082_13158
NZ_APAH01000258.1	Protein Homology	CDS	24807	27221	.	-	0	ID=cds-WP_001240929.1;Parent=gene-CFSAN001082_RS36845;Dbxref=GenBank:WP_001240929.1;Name=WP_001240929.1;Ontology_term=GO:0071709,GO:0009279;gbkey=CDS;gene=bamA;go_component=cell outer membrane|0009279||IEA;go_process=membrane assembly|0071709||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459229.1;locus_tag=CFSAN001082_RS36845;product=outer membrane protein assembly factor BamA;protein_id=WP_001240929.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	27253	28605	.	-	.	ID=gene-CFSAN001082_RS36850;Name=rseP;gbkey=Gene;gene=rseP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36850;old_locus_tag=CFSAN001082_13163
NZ_APAH01000258.1	Protein Homology	CDS	27253	28605	.	-	0	ID=cds-WP_000949017.1;Parent=gene-CFSAN001082_RS36850;Dbxref=GenBank:WP_000949017.1;Name=WP_000949017.1;Ontology_term=GO:0006508,GO:0004222,GO:0005515,GO:0016020;gbkey=CDS;gene=rseP;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132106.1;locus_tag=CFSAN001082_RS36850;product=sigma E protease regulator RseP;protein_id=WP_000949017.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	28617	29474	.	-	.	ID=gene-CFSAN001082_RS36855;Name=cdsA;gbkey=Gene;gene=cdsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36855;old_locus_tag=CFSAN001082_13168
NZ_APAH01000258.1	Protein Homology	CDS	28617	29474	.	-	0	ID=cds-WP_000922422.1;Parent=gene-CFSAN001082_RS36855;Dbxref=GenBank:WP_000922422.1;Name=WP_000922422.1;Ontology_term=GO:0016772;gbkey=CDS;gene=cdsA;go_function=transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459227.1;locus_tag=CFSAN001082_RS36855;product=phosphatidate cytidylyltransferase;protein_id=WP_000922422.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	29487	30245	.	-	.	ID=gene-CFSAN001082_RS36860;Name=ispU;gbkey=Gene;gene=ispU;gene_biotype=protein_coding;gene_synonym=uppS;locus_tag=CFSAN001082_RS36860;old_locus_tag=CFSAN001082_13173
NZ_APAH01000258.1	Protein Homology	CDS	29487	30245	.	-	0	ID=cds-WP_000947413.1;Parent=gene-CFSAN001082_RS36860;Dbxref=GenBank:WP_000947413.1;Name=WP_000947413.1;Ontology_term=GO:0043164,GO:0004659,GO:0008834;gbkey=CDS;gene=ispU;go_function=prenyltransferase activity|0004659||IEA,ditrans%2Cpolycis-undecaprenyl-diphosphate synthase [(2E%2C6E)-farnesyl-diphosphate specific] activity|0008834||IEA;go_process=Gram-negative-bacterium-type cell wall biogenesis|0043164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459226.1;locus_tag=CFSAN001082_RS36860;product=(2E%2C6E)-farnesyl-diphosphate-specific ditrans%2Cpolycis-undecaprenyl-diphosphate synthase;protein_id=WP_000947413.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	30558	31754	.	-	.	ID=gene-CFSAN001082_RS36865;Name=ispC;gbkey=Gene;gene=ispC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36865;old_locus_tag=CFSAN001082_13178
NZ_APAH01000258.1	Protein Homology	CDS	30558	31754	.	-	0	ID=cds-WP_000811905.1;Parent=gene-CFSAN001082_RS36865;Dbxref=GenBank:WP_000811905.1;Name=WP_000811905.1;Ontology_term=GO:0008299,GO:0005515,GO:0030604,GO:0046872,GO:0070402;gbkey=CDS;gene=ispC;go_function=protein binding|0005515||IEA,1-deoxy-D-xylulose-5-phosphate reductoisomerase activity|0030604||IEA,metal ion binding|0046872||IEA,NADPH binding|0070402||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459225.1;locus_tag=CFSAN001082_RS36865;product=1-deoxy-D-xylulose-5-phosphate reductoisomerase;protein_id=WP_000811905.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	31896	32453	.	-	.	ID=gene-CFSAN001082_RS36870;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36870;old_locus_tag=CFSAN001082_13183
NZ_APAH01000258.1	Protein Homology	CDS	31896	32453	.	-	0	ID=cds-WP_000622423.1;Parent=gene-CFSAN001082_RS36870;Dbxref=GenBank:WP_000622423.1;Name=WP_000622423.1;Ontology_term=GO:0006412,GO:0008135;gbkey=CDS;gene=frr;go_function=translation factor activity%2C RNA binding|0008135||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000622421.1;locus_tag=CFSAN001082_RS36870;product=ribosome recycling factor;protein_id=WP_000622423.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	32600	33325	.	-	.	ID=gene-CFSAN001082_RS36875;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36875;old_locus_tag=CFSAN001082_13188
NZ_APAH01000258.1	Protein Homology	CDS	32600	33325	.	-	0	ID=cds-WP_000224567.1;Parent=gene-CFSAN001082_RS36875;Dbxref=GenBank:WP_000224567.1;Name=WP_000224567.1;Ontology_term=GO:0006221,GO:0015949,GO:0033862,GO:0005737;gbkey=CDS;gene=pyrH;go_component=cytoplasm|0005737||IEA;go_function=UMP kinase activity|0033862||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA,nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000224576.1;locus_tag=CFSAN001082_RS36875;product=UMP kinase;protein_id=WP_000224567.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	33470	34321	.	-	.	ID=gene-CFSAN001082_RS36880;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36880;old_locus_tag=CFSAN001082_13193
NZ_APAH01000258.1	Protein Homology	CDS	33470	34321	.	-	0	ID=cds-WP_000808106.1;Parent=gene-CFSAN001082_RS36880;Dbxref=GenBank:WP_000808106.1;Name=WP_000808106.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tsf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132116.1;locus_tag=CFSAN001082_RS36880;product=translation elongation factor Ts;protein_id=WP_000808106.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	34579	35304	.	-	.	ID=gene-CFSAN001082_RS36885;Name=rpsB;gbkey=Gene;gene=rpsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36885;old_locus_tag=CFSAN001082_13198
NZ_APAH01000258.1	Protein Homology	CDS	34579	35304	.	-	0	ID=cds-WP_000246886.1;Parent=gene-CFSAN001082_RS36885;Dbxref=GenBank:WP_000246886.1;Name=WP_000246886.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsB;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132117.1;locus_tag=CFSAN001082_RS36885;product=30S ribosomal protein S2;protein_id=WP_000246886.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	35755	36549	.	+	.	ID=gene-CFSAN001082_RS36890;Name=map;gbkey=Gene;gene=map;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36890;old_locus_tag=CFSAN001082_13203
NZ_APAH01000258.1	Protein Homology	CDS	35755	36549	.	+	0	ID=cds-WP_001018214.1;Parent=gene-CFSAN001082_RS36890;Dbxref=GenBank:WP_001018214.1;Name=WP_001018214.1;Ontology_term=GO:0006508,GO:0070006;gbkey=CDS;gene=map;go_function=metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459220.1;locus_tag=CFSAN001082_RS36890;product=type I methionyl aminopeptidase;protein_id=WP_001018214.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	36787	39486	.	+	.	ID=gene-CFSAN001082_RS36895;Name=glnD;gbkey=Gene;gene=glnD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36895;old_locus_tag=CFSAN001082_13208
NZ_APAH01000258.1	Protein Homology	CDS	36787	39486	.	+	0	ID=cds-WP_023254436.1;Parent=gene-CFSAN001082_RS36895;Dbxref=GenBank:WP_023254436.1;Name=WP_023254436.1;Ontology_term=GO:0008152,GO:0016779;gbkey=CDS;gene=glnD;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459219.1;locus_tag=CFSAN001082_RS36895;product=bifunctional uridylyltransferase/uridylyl-removing protein GlnD;protein_id=WP_023254436.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	39489	40313	.	+	.	ID=gene-CFSAN001082_RS36900;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36900;old_locus_tag=CFSAN001082_13213
NZ_APAH01000258.1	Protein Homology	CDS	39489	40313	.	+	0	ID=cds-WP_001186676.1;Parent=gene-CFSAN001082_RS36900;Dbxref=GenBank:WP_001186676.1;Name=WP_001186676.1;Ontology_term=GO:0009089,GO:0008666;gbkey=CDS;gene=dapD;go_function=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase activity|0008666||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132123.1;locus_tag=CFSAN001082_RS36900;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=WP_001186676.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	40349	41650	.	-	.	ID=gene-CFSAN001082_RS36905;Name=CFSAN001082_RS36905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36905;old_locus_tag=CFSAN001082_13218
NZ_APAH01000258.1	Protein Homology	CDS	40349	41650	.	-	0	ID=cds-WP_000017194.1;Parent=gene-CFSAN001082_RS36905;Dbxref=GenBank:WP_000017194.1;Name=WP_000017194.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459217.1;locus_tag=CFSAN001082_RS36905;product=MFS transporter;protein_id=WP_000017194.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	41897	42283	.	+	.	ID=gene-CFSAN001082_RS36910;Name=CFSAN001082_RS36910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36910;old_locus_tag=CFSAN001082_13223
NZ_APAH01000258.1	Protein Homology	CDS	41897	42283	.	+	0	ID=cds-WP_000272193.1;Parent=gene-CFSAN001082_RS36910;Dbxref=GenBank:WP_000272193.1;Name=WP_000272193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000272186.1;locus_tag=CFSAN001082_RS36910;product=DUF3461 family protein;protein_id=WP_000272193.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	42372	43529	.	-	.	ID=gene-CFSAN001082_RS36915;Name=cdaR;gbkey=Gene;gene=cdaR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36915;old_locus_tag=CFSAN001082_13228
NZ_APAH01000258.1	Protein Homology	CDS	42372	43529	.	-	0	ID=cds-WP_000929420.1;Parent=gene-CFSAN001082_RS36915;Dbxref=GenBank:WP_000929420.1;Name=WP_000929420.1;gbkey=CDS;gene=cdaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459215.1;locus_tag=CFSAN001082_RS36915;product=DNA-binding transcriptional regulator CdaR;protein_id=WP_000929420.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	43682	45109	.	-	.	ID=gene-CFSAN001082_RS36920;Name=degP;gbkey=Gene;gene=degP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36920;old_locus_tag=CFSAN001082_13233
NZ_APAH01000258.1	Protein Homology	CDS	43682	45109	.	-	0	ID=cds-WP_023254437.1;Parent=gene-CFSAN001082_RS36920;Dbxref=GenBank:WP_023254437.1;Name=WP_023254437.1;gbkey=CDS;gene=degP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459214.1;locus_tag=CFSAN001082_RS36920;product=serine endoprotease DegP;protein_id=WP_023254437.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	45239	46756	.	-	.	ID=gene-CFSAN001082_RS36925;Name=dgt;gbkey=Gene;gene=dgt;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36925;old_locus_tag=CFSAN001082_13238
NZ_APAH01000258.1	Protein Homology	CDS	45239	46756	.	-	0	ID=cds-WP_000146450.1;Parent=gene-CFSAN001082_RS36925;Dbxref=GenBank:WP_000146450.1;Name=WP_000146450.1;Ontology_term=GO:0006203,GO:0000287,GO:0008832;gbkey=CDS;gene=dgt;go_function=magnesium ion binding|0000287||IEA,dGTPase activity|0008832||IEA;go_process=dGTP catabolic process|0006203||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459213.1;locus_tag=CFSAN001082_RS36925;product=dGTPase;protein_id=WP_000146450.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	46841	47539	.	+	.	ID=gene-CFSAN001082_RS36930;Name=mtnN;gbkey=Gene;gene=mtnN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36930;old_locus_tag=CFSAN001082_13243
NZ_APAH01000258.1	Protein Homology	CDS	46841	47539	.	+	0	ID=cds-WP_000689822.1;Parent=gene-CFSAN001082_RS36930;Dbxref=GenBank:WP_000689822.1;Name=WP_000689822.1;Ontology_term=GO:0009164,GO:0019509,GO:0008782,GO:0008930;gbkey=CDS;gene=mtnN;go_function=adenosylhomocysteine nucleosidase activity|0008782||IEA,methylthioadenosine nucleosidase activity|0008930||IEA;go_process=nucleoside catabolic process|0009164||IEA,L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459212.1;locus_tag=CFSAN001082_RS36930;product=5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase;protein_id=WP_000689822.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	47532	48332	.	+	.	ID=gene-CFSAN001082_RS36935;Name=btuF;gbkey=Gene;gene=btuF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36935;old_locus_tag=CFSAN001082_13248
NZ_APAH01000258.1	Protein Homology	CDS	47532	48332	.	+	0	ID=cds-WP_023254438.1;Parent=gene-CFSAN001082_RS36935;Dbxref=GenBank:WP_023254438.1;Name=WP_023254438.1;Ontology_term=GO:0005524,GO:0031419;gbkey=CDS;gene=btuF;go_function=ATP binding|0005524||IEA,cobalamin binding|0031419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459211.1;locus_tag=CFSAN001082_RS36935;product=vitamin B12 ABC transporter substrate-binding protein BtuF;protein_id=WP_023254438.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	48369	48992	.	+	.	ID=gene-CFSAN001082_RS36940;Name=CFSAN001082_RS36940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36940;old_locus_tag=CFSAN001082_13253
NZ_APAH01000258.1	Protein Homology	CDS	48369	48992	.	+	0	ID=cds-WP_000964234.1;Parent=gene-CFSAN001082_RS36940;Dbxref=GenBank:WP_000964234.1;Name=WP_000964234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459210.1;locus_tag=CFSAN001082_RS36940;product=TRIC cation channel family protein;protein_id=WP_000964234.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	49093	49437	.	-	.	ID=gene-CFSAN001082_RS36945;Name=erpA;gbkey=Gene;gene=erpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36945;old_locus_tag=CFSAN001082_13258
NZ_APAH01000258.1	Protein Homology	CDS	49093	49437	.	-	0	ID=cds-WP_001278668.1;Parent=gene-CFSAN001082_RS36945;Dbxref=GenBank:WP_001278668.1;Name=WP_001278668.1;Ontology_term=GO:0016226,GO:0051536;gbkey=CDS;gene=erpA;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001295564.1;locus_tag=CFSAN001082_RS36945;product=iron-sulfur cluster insertion protein ErpA;protein_id=WP_001278668.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	49519	50940	.	-	.	ID=gene-CFSAN001082_RS36950;Name=clcA;gbkey=Gene;gene=clcA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36950;old_locus_tag=CFSAN001082_13263
NZ_APAH01000258.1	Protein Homology	CDS	49519	50940	.	-	0	ID=cds-WP_000845430.1;Parent=gene-CFSAN001082_RS36950;Dbxref=GenBank:WP_000845430.1;Name=WP_000845430.1;Ontology_term=GO:0006821,GO:0055085,GO:0005247,GO:0005886;gbkey=CDS;gene=clcA;go_component=plasma membrane|0005886||IEA;go_function=voltage-gated chloride channel activity|0005247||IEA;go_process=chloride transport|0006821||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459208.1;locus_tag=CFSAN001082_RS36950;product=H(+)/Cl(-) exchange transporter ClcA;protein_id=WP_000845430.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	51110	52390	.	+	.	ID=gene-CFSAN001082_RS36955;Name=hemL;gbkey=Gene;gene=hemL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36955;old_locus_tag=CFSAN001082_13268
NZ_APAH01000258.1	Protein Homology	CDS	51110	52390	.	+	0	ID=cds-WP_023254439.1;Parent=gene-CFSAN001082_RS36955;Dbxref=GenBank:WP_023254439.1;Name=WP_023254439.1;Ontology_term=GO:0033014,GO:0042286;gbkey=CDS;gene=hemL;go_function=glutamate-1-semialdehyde 2%2C1-aminomutase activity|0042286||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020233394.1;locus_tag=CFSAN001082_RS36955;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=WP_023254439.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	52489	53328	.	-	.	ID=gene-CFSAN001082_RS36960;Name=stfH;gbkey=Gene;gene=stfH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36960;old_locus_tag=CFSAN001082_13273
NZ_APAH01000258.1	Protein Homology	CDS	52489	53328	.	-	0	ID=cds-WP_001537810.1;Parent=gene-CFSAN001082_RS36960;Dbxref=GenBank:WP_001537810.1;Name=WP_001537810.1;gbkey=CDS;gene=stfH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459206.1;locus_tag=CFSAN001082_RS36960;product=fimbrial adhesin StfH;protein_id=WP_001537810.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	53328	53858	.	-	.	ID=gene-CFSAN001082_RS36965;Name=CFSAN001082_RS36965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36965;old_locus_tag=CFSAN001082_13278
NZ_APAH01000258.1	Protein Homology	CDS	53328	53858	.	-	0	ID=cds-WP_001129319.1;Parent=gene-CFSAN001082_RS36965;Dbxref=GenBank:WP_001129319.1;Name=WP_001129319.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459205.1;locus_tag=CFSAN001082_RS36965;product=fimbrial protein;protein_id=WP_001129319.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	53858	54334	.	-	.	ID=gene-CFSAN001082_RS36970;Name=stfF;gbkey=Gene;gene=stfF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36970;old_locus_tag=CFSAN001082_13283
NZ_APAH01000258.1	Protein Homology	CDS	53858	54334	.	-	0	ID=cds-WP_000737994.1;Parent=gene-CFSAN001082_RS36970;Dbxref=GenBank:WP_000737994.1;Name=WP_000737994.1;gbkey=CDS;gene=stfF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000725047.1;locus_tag=CFSAN001082_RS36970;product=fimbrial minor subunit StfF;protein_id=WP_000737994.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	54331	54843	.	-	.	ID=gene-CFSAN001082_RS36975;Name=CFSAN001082_RS36975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36975;old_locus_tag=CFSAN001082_13288
NZ_APAH01000258.1	Protein Homology	CDS	54331	54843	.	-	0	ID=cds-WP_001647824.1;Parent=gene-CFSAN001082_RS36975;Dbxref=GenBank:WP_001647824.1;Name=WP_001647824.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459203.1;locus_tag=CFSAN001082_RS36975;product=fimbrial protein;protein_id=WP_001647824.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	54862	55614	.	-	.	ID=gene-CFSAN001082_RS36980;Name=stfD;gbkey=Gene;gene=stfD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36980;old_locus_tag=CFSAN001082_13293
NZ_APAH01000258.1	Protein Homology	CDS	54862	55614	.	-	0	ID=cds-WP_023254440.1;Parent=gene-CFSAN001082_RS36980;Dbxref=GenBank:WP_023254440.1;Name=WP_023254440.1;gbkey=CDS;gene=stfD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459202.1;locus_tag=CFSAN001082_RS36980;product=fimbrial chaperone StfD;protein_id=WP_023254440.1;transl_table=11
NZ_APAH01000258.1	RefSeq	gene	55632	58289	.	-	.	ID=gene-CFSAN001082_RS36985;Name=CFSAN001082_RS36985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36985;old_locus_tag=CFSAN001082_13298
NZ_APAH01000258.1	Protein Homology	CDS	55632	58289	.	-	0	ID=cds-WP_023254441.1;Parent=gene-CFSAN001082_RS36985;Dbxref=GenBank:WP_023254441.1;Name=WP_023254441.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459201.1;locus_tag=CFSAN001082_RS36985;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_023254441.1;transl_table=11
##sequence-region NZ_APAH01000259.1 1 4179
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000259.1	RefSeq	region	1	4179	.	+	.	ID=NZ_APAH01000259.1:1..4179;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000259.1	RefSeq	gene	1	554	.	-	.	ID=gene-CFSAN001082_RS36990;Name=CFSAN001082_RS36990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36990;old_locus_tag=CFSAN001082_13305;partial=true;start_range=.,1
NZ_APAH01000259.1	Protein Homology	CDS	1	554	.	-	0	ID=cds-WP_000444855.1;Parent=gene-CFSAN001082_RS36990;Dbxref=GenBank:WP_000444855.1;Name=WP_000444855.1;Ontology_term=GO:0006814,GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459059.1;locus_tag=CFSAN001082_RS36990;partial=true;product=sodium ion-translocating decarboxylase subunit beta;protein_id=WP_000444855.1;start_range=.,1;transl_table=11
NZ_APAH01000259.1	RefSeq	gene	567	2336	.	-	.	ID=gene-CFSAN001082_RS36995;Name=oadA;gbkey=Gene;gene=oadA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS36995;old_locus_tag=CFSAN001082_13310
NZ_APAH01000259.1	Protein Homology	CDS	567	2336	.	-	0	ID=cds-WP_023254442.1;Parent=gene-CFSAN001082_RS36995;Dbxref=GenBank:WP_023254442.1;Name=WP_023254442.1;Ontology_term=GO:0006814,GO:0008948,GO:0015081;gbkey=CDS;gene=oadA;go_function=oxaloacetate decarboxylase activity|0008948||IEA,sodium ion transmembrane transporter activity|0015081||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459060.1;locus_tag=CFSAN001082_RS36995;product=sodium-extruding oxaloacetate decarboxylase subunit alpha;protein_id=WP_023254442.1;transl_table=11
NZ_APAH01000259.1	RefSeq	gene	2352	2591	.	-	.	ID=gene-CFSAN001082_RS37000;Name=CFSAN001082_RS37000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37000;old_locus_tag=CFSAN001082_13315
NZ_APAH01000259.1	Protein Homology	CDS	2352	2591	.	-	0	ID=cds-WP_001001155.1;Parent=gene-CFSAN001082_RS37000;Dbxref=GenBank:WP_001001155.1;Name=WP_001001155.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010836018.1;locus_tag=CFSAN001082_RS37000;product=oxaloacetate decarboxylase subunit gamma;protein_id=WP_001001155.1;transl_table=11
NZ_APAH01000259.1	RefSeq	gene	2750	4090	.	-	.	ID=gene-CFSAN001082_RS37005;Name=citS;gbkey=Gene;gene=citS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37005;old_locus_tag=CFSAN001082_13320
NZ_APAH01000259.1	Protein Homology	CDS	2750	4090	.	-	0	ID=cds-WP_000183602.1;Parent=gene-CFSAN001082_RS37005;Dbxref=GenBank:WP_000183602.1;Name=WP_000183602.1;Ontology_term=GO:0006101,GO:0006814,GO:0008514,GO:0015293;gbkey=CDS;gene=citS;go_function=organic anion transmembrane transporter activity|0008514||IEA,symporter activity|0015293||IEA;go_process=citrate metabolic process|0006101||IEA,sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459062.1;locus_tag=CFSAN001082_RS37005;product=citrate/sodium symporter CitS;protein_id=WP_000183602.1;transl_table=11
##sequence-region NZ_APAH01000260.1 1 6809
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000260.1	RefSeq	region	1	6809	.	+	.	ID=NZ_APAH01000260.1:1..6809;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000260.1	RefSeq	gene	1	552	.	+	.	ID=gene-CFSAN001082_RS37010;Name=CFSAN001082_RS37010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37010;old_locus_tag=CFSAN001082_13325;partial=true;start_range=.,1
NZ_APAH01000260.1	Protein Homology	CDS	1	552	.	+	0	ID=cds-WP_023254443.1;Parent=gene-CFSAN001082_RS37010;Dbxref=GenBank:WP_023254443.1;Name=WP_023254443.1;Ontology_term=GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459742.1;locus_tag=CFSAN001082_RS37010;partial=true;product=fumarate hydratase;protein_id=WP_023254443.1;start_range=.,1;transl_table=11
NZ_APAH01000260.1	RefSeq	gene	567	1112	.	+	.	ID=gene-CFSAN001082_RS37015;Name=CFSAN001082_RS37015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37015;old_locus_tag=CFSAN001082_13330
NZ_APAH01000260.1	Protein Homology	CDS	567	1112	.	+	0	ID=cds-WP_000970374.1;Parent=gene-CFSAN001082_RS37015;Dbxref=GenBank:WP_000970374.1;Name=WP_000970374.1;Ontology_term=GO:0016836;gbkey=CDS;go_function=hydro-lyase activity|0016836||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459741.1;locus_tag=CFSAN001082_RS37015;product=FumA C-terminus/TtdB family hydratase beta subunit;protein_id=WP_000970374.1;transl_table=11
NZ_APAH01000260.1	RefSeq	gene	1206	2258	.	-	.	ID=gene-CFSAN001082_RS37020;Name=aroG;gbkey=Gene;gene=aroG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37020;old_locus_tag=CFSAN001082_13335
NZ_APAH01000260.1	Protein Homology	CDS	1206	2258	.	-	0	ID=cds-WP_001109233.1;Parent=gene-CFSAN001082_RS37020;Dbxref=GenBank:WP_001109233.1;Name=WP_001109233.1;gbkey=CDS;gene=aroG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001109196.1;locus_tag=CFSAN001082_RS37020;product=3-deoxy-7-phosphoheptulonate synthase AroG;protein_id=WP_001109233.1;transl_table=11
NZ_APAH01000260.1	RefSeq	gene	2578	2964	.	+	.	ID=gene-CFSAN001082_RS37025;Name=CFSAN001082_RS37025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37025;old_locus_tag=CFSAN001082_13340
NZ_APAH01000260.1	Protein Homology	CDS	2578	2964	.	+	0	ID=cds-WP_000784380.1;Parent=gene-CFSAN001082_RS37025;Dbxref=GenBank:WP_000784380.1;Name=WP_000784380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459739.1;locus_tag=CFSAN001082_RS37025;product=YbgS-like family protein;protein_id=WP_000784380.1;transl_table=11
NZ_APAH01000260.1	RefSeq	gene	3075	4013	.	+	.	ID=gene-CFSAN001082_RS37030;Name=zitB;gbkey=Gene;gene=zitB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37030;old_locus_tag=CFSAN001082_13345
NZ_APAH01000260.1	Protein Homology	CDS	3075	4013	.	+	0	ID=cds-WP_000951250.1;Parent=gene-CFSAN001082_RS37030;Dbxref=GenBank:WP_000951250.1;Name=WP_000951250.1;Ontology_term=GO:0006829,GO:0055085,GO:0005385,GO:0016020;gbkey=CDS;gene=zitB;go_component=membrane|0016020||IEA;go_function=zinc ion transmembrane transporter activity|0005385||IEA;go_process=zinc ion transport|0006829||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459738.1;locus_tag=CFSAN001082_RS37030;product=CDF family zinc transporter ZitB;protein_id=WP_000951250.1;transl_table=11
NZ_APAH01000260.1	RefSeq	gene	4010	4729	.	-	.	ID=gene-CFSAN001082_RS37035;Name=pnuC;gbkey=Gene;gene=pnuC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37035;old_locus_tag=CFSAN001082_13350
NZ_APAH01000260.1	Protein Homology	CDS	4010	4729	.	-	0	ID=cds-WP_023254444.1;Parent=gene-CFSAN001082_RS37035;Dbxref=GenBank:WP_023254444.1;Name=WP_023254444.1;Ontology_term=GO:0015890,GO:0015663,GO:0016020;gbkey=CDS;gene=pnuC;go_component=membrane|0016020||IEA;go_function=nicotinamide mononucleotide transmembrane transporter activity|0015663||IEA;go_process=nicotinamide mononucleotide transport|0015890||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459737.1;locus_tag=CFSAN001082_RS37035;product=nicotinamide riboside transporter PnuC;protein_id=WP_023254444.1;transl_table=11
NZ_APAH01000260.1	RefSeq	gene	4754	5797	.	-	.	ID=gene-CFSAN001082_RS37040;Name=nadA;gbkey=Gene;gene=nadA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37040;old_locus_tag=CFSAN001082_13355
NZ_APAH01000260.1	Protein Homology	CDS	4754	5797	.	-	0	ID=cds-WP_000115343.1;Parent=gene-CFSAN001082_RS37040;Dbxref=GenBank:WP_000115343.1;Name=WP_000115343.1;Ontology_term=GO:0009435,GO:0008987,GO:0051539;gbkey=CDS;gene=nadA;go_function=quinolinate synthetase A activity|0008987||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459736.1;locus_tag=CFSAN001082_RS37040;product=quinolinate synthase NadA;protein_id=WP_000115343.1;transl_table=11
NZ_APAH01000260.1	RefSeq	gene	6092	6217	.	-	.	ID=gene-CFSAN001082_RS46310;Name=CFSAN001082_RS46310;gbkey=Gene;gene_biotype=ncRNA;locus_tag=CFSAN001082_RS46310
NZ_APAH01000260.1	cmsearch	ncRNA	6092	6217	.	-	.	ID=rna-CFSAN001082_RS46310;Parent=gene-CFSAN001082_RS46310;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46310;product=RtT sRNA
NZ_APAH01000260.1	cmsearch	exon	6092	6217	.	-	.	ID=exon-CFSAN001082_RS46310-1;Parent=rna-CFSAN001082_RS46310;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46310;product=RtT sRNA
NZ_APAH01000260.1	RefSeq	gene	6247	6322	.	-	.	ID=gene-CFSAN001082_RS37045;Name=CFSAN001082_RS37045;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS37045;old_locus_tag=CFSAN001082_t13362
NZ_APAH01000260.1	tRNAscan-SE	tRNA	6247	6322	.	-	.	ID=rna-CFSAN001082_RS37045;Parent=gene-CFSAN001082_RS37045;anticodon=(pos:complement(6287..6289));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS37045;product=tRNA-Lys
NZ_APAH01000260.1	tRNAscan-SE	exon	6247	6322	.	-	.	ID=exon-CFSAN001082_RS37045-1;Parent=rna-CFSAN001082_RS37045;anticodon=(pos:complement(6287..6289));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS37045;product=tRNA-Lys
NZ_APAH01000260.1	RefSeq	gene	6457	6532	.	-	.	ID=gene-CFSAN001082_RS37050;Name=CFSAN001082_RS37050;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS37050;old_locus_tag=CFSAN001082_t13364
NZ_APAH01000260.1	tRNAscan-SE	tRNA	6457	6532	.	-	.	ID=rna-CFSAN001082_RS37050;Parent=gene-CFSAN001082_RS37050;anticodon=(pos:complement(6497..6499));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS37050;product=tRNA-Lys
NZ_APAH01000260.1	tRNAscan-SE	exon	6457	6532	.	-	.	ID=exon-CFSAN001082_RS37050-1;Parent=rna-CFSAN001082_RS37050;anticodon=(pos:complement(6497..6499));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS37050;product=tRNA-Lys
NZ_APAH01000260.1	RefSeq	gene	6667	6742	.	-	.	ID=gene-CFSAN001082_RS37055;Name=CFSAN001082_RS37055;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS37055;old_locus_tag=CFSAN001082_t13366
NZ_APAH01000260.1	tRNAscan-SE	tRNA	6667	6742	.	-	.	ID=rna-CFSAN001082_RS37055;Parent=gene-CFSAN001082_RS37055;anticodon=(pos:complement(6707..6709));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS37055;product=tRNA-Lys
NZ_APAH01000260.1	tRNAscan-SE	exon	6667	6742	.	-	.	ID=exon-CFSAN001082_RS37055-1;Parent=rna-CFSAN001082_RS37055;anticodon=(pos:complement(6707..6709));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS37055;product=tRNA-Lys
##sequence-region NZ_APAH01000261.1 1 4166
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000261.1	RefSeq	region	1	4166	.	+	.	ID=NZ_APAH01000261.1:1..4166;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000261.1	RefSeq	pseudogene	1	301	.	-	.	ID=gene-CFSAN001082_RS37060;Name=CFSAN001082_RS37060;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS37060;old_locus_tag=CFSAN001082_13366;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000261.1	Protein Homology	CDS	1	301	.	-	0	ID=cds-CFSAN001082_RS37060;Parent=gene-CFSAN001082_RS37060;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001556321.1;locus_tag=CFSAN001082_RS37060;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000261.1	RefSeq	gene	553	807	.	+	.	ID=gene-CFSAN001082_RS47175;Name=CFSAN001082_RS47175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47175;old_locus_tag=CFSAN001082_13371
NZ_APAH01000261.1	Protein Homology	CDS	553	807	.	+	0	ID=cds-WP_369700139.1;Parent=gene-CFSAN001082_RS47175;Dbxref=GenBank:WP_369700139.1;Name=WP_369700139.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009110920.1;locus_tag=CFSAN001082_RS47175;product=helix-turn-helix transcriptional regulator;protein_id=WP_369700139.1;transl_table=11
NZ_APAH01000261.1	RefSeq	gene	921	2000	.	+	.	ID=gene-CFSAN001082_RS37065;Name=CFSAN001082_RS37065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37065;old_locus_tag=CFSAN001082_13376
NZ_APAH01000261.1	Protein Homology	CDS	921	2000	.	+	0	ID=cds-WP_023254446.1;Parent=gene-CFSAN001082_RS37065;Dbxref=GenBank:WP_023254446.1;Name=WP_023254446.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000773613.1;locus_tag=CFSAN001082_RS37065;product=hypothetical protein;protein_id=WP_023254446.1;transl_table=11
NZ_APAH01000261.1	RefSeq	gene	2104	3006	.	-	.	ID=gene-CFSAN001082_RS37070;Name=CFSAN001082_RS37070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37070;old_locus_tag=CFSAN001082_13381
NZ_APAH01000261.1	Protein Homology	CDS	2104	3006	.	-	0	ID=cds-WP_023181617.1;Parent=gene-CFSAN001082_RS37070;Dbxref=GenBank:WP_023181617.1;Name=WP_023181617.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462636.1;locus_tag=CFSAN001082_RS37070;product=LysR family transcriptional regulator;protein_id=WP_023181617.1;transl_table=11
NZ_APAH01000261.1	RefSeq	gene	3080	3961	.	+	.	ID=gene-CFSAN001082_RS37075;Name=CFSAN001082_RS37075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37075;old_locus_tag=CFSAN001082_13386
NZ_APAH01000261.1	Protein Homology	CDS	3080	3961	.	+	0	ID=cds-WP_023181616.1;Parent=gene-CFSAN001082_RS37075;Dbxref=GenBank:WP_023181616.1;Name=WP_023181616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462637.1;locus_tag=CFSAN001082_RS37075;product=HARLDQ motif MBL-fold protein;protein_id=WP_023181616.1;transl_table=11
##sequence-region NZ_APAH01000262.1 1 14126
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000262.1	RefSeq	region	1	14126	.	+	.	ID=NZ_APAH01000262.1:1..14126;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000262.1	RefSeq	gene	136	618	.	-	.	ID=gene-CFSAN001082_RS37080;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37080;old_locus_tag=CFSAN001082_13391
NZ_APAH01000262.1	Protein Homology	CDS	136	618	.	-	0	ID=cds-WP_001518569.1;Parent=gene-CFSAN001082_RS37080;Dbxref=GenBank:WP_001518569.1;Name=WP_001518569.1;Ontology_term=GO:0003723;gbkey=CDS;gene=smpB;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461618.1;locus_tag=CFSAN001082_RS37080;product=SsrA-binding protein SmpB;protein_id=WP_001518569.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	807	1244	.	+	.	ID=gene-CFSAN001082_RS37085;Name=CFSAN001082_RS37085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37085;old_locus_tag=CFSAN001082_13396
NZ_APAH01000262.1	Protein Homology	CDS	807	1244	.	+	0	ID=cds-WP_001543334.1;Parent=gene-CFSAN001082_RS37085;Dbxref=GenBank:WP_001543334.1;Name=WP_001543334.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001543334.1;locus_tag=CFSAN001082_RS37085;product=type II toxin-antitoxin system RatA family toxin;protein_id=WP_001543334.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	1234	1524	.	+	.	ID=gene-CFSAN001082_RS37090;Name=CFSAN001082_RS37090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37090;old_locus_tag=CFSAN001082_13401
NZ_APAH01000262.1	Protein Homology	CDS	1234	1524	.	+	0	ID=cds-WP_023254447.1;Parent=gene-CFSAN001082_RS37090;Dbxref=GenBank:WP_023254447.1;Name=WP_023254447.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461616.1;locus_tag=CFSAN001082_RS37090;product=RnfH family protein;protein_id=WP_023254447.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	1689	2027	.	-	.	ID=gene-CFSAN001082_RS37095;Name=bamE;gbkey=Gene;gene=bamE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37095;old_locus_tag=CFSAN001082_13406
NZ_APAH01000262.1	Protein Homology	CDS	1689	2027	.	-	0	ID=cds-WP_001203445.1;Parent=gene-CFSAN001082_RS37095;Dbxref=GenBank:WP_001203445.1;Name=WP_001203445.1;gbkey=CDS;gene=bamE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461615.1;locus_tag=CFSAN001082_RS37095;product=outer membrane protein assembly factor BamE;protein_id=WP_001203445.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	2176	3837	.	-	.	ID=gene-CFSAN001082_RS37100;Name=recN;gbkey=Gene;gene=recN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37100;old_locus_tag=CFSAN001082_13411
NZ_APAH01000262.1	Protein Homology	CDS	2176	3837	.	-	0	ID=cds-WP_023254448.1;Parent=gene-CFSAN001082_RS37100;Dbxref=GenBank:WP_023254448.1;Name=WP_023254448.1;Ontology_term=GO:0006281,GO:0006310,GO:0005524;gbkey=CDS;gene=recN;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461614.1;locus_tag=CFSAN001082_RS37100;product=DNA repair protein RecN;protein_id=WP_023254448.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	3923	4801	.	-	.	ID=gene-CFSAN001082_RS37105;Name=nadK;gbkey=Gene;gene=nadK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37105;old_locus_tag=CFSAN001082_13416
NZ_APAH01000262.1	Protein Homology	CDS	3923	4801	.	-	0	ID=cds-WP_001059155.1;Parent=gene-CFSAN001082_RS37105;Dbxref=GenBank:WP_001059155.1;Name=WP_001059155.1;Ontology_term=GO:0003951;gbkey=CDS;gene=nadK;go_function=NAD+ kinase activity|0003951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020239499.1;locus_tag=CFSAN001082_RS37105;product=NAD(+) kinase;protein_id=WP_001059155.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	4924	5514	.	+	.	ID=gene-CFSAN001082_RS37110;Name=grpE;gbkey=Gene;gene=grpE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37110;old_locus_tag=CFSAN001082_13421
NZ_APAH01000262.1	Protein Homology	CDS	4924	5514	.	+	0	ID=cds-WP_001518875.1;Parent=gene-CFSAN001082_RS37110;Dbxref=GenBank:WP_001518875.1;Name=WP_001518875.1;gbkey=CDS;gene=grpE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461611.1;locus_tag=CFSAN001082_RS37110;product=nucleotide exchange factor GrpE;protein_id=WP_001518875.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	5549	6154	.	-	.	ID=gene-CFSAN001082_RS37115;Name=CFSAN001082_RS37115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37115;old_locus_tag=CFSAN001082_13426
NZ_APAH01000262.1	Protein Homology	CDS	5549	6154	.	-	0	ID=cds-WP_001727770.1;Parent=gene-CFSAN001082_RS37115;Dbxref=GenBank:WP_001727770.1;Name=WP_001727770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461610.1;locus_tag=CFSAN001082_RS37115;product=DUF6630 family protein;protein_id=WP_001727770.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	6275	7561	.	-	.	ID=gene-CFSAN001082_RS37120;Name=CFSAN001082_RS37120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37120;old_locus_tag=CFSAN001082_13431
NZ_APAH01000262.1	Protein Homology	CDS	6275	7561	.	-	0	ID=cds-WP_127172650.1;Parent=gene-CFSAN001082_RS37120;Dbxref=GenBank:WP_127172650.1;Name=WP_127172650.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026171.3;locus_tag=CFSAN001082_RS37120;product=HlyC/CorC family transporter;protein_id=WP_127172650.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	7581	8372	.	-	.	ID=gene-CFSAN001082_RS37125;Name=CFSAN001082_RS37125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37125;old_locus_tag=CFSAN001082_13436
NZ_APAH01000262.1	Protein Homology	CDS	7581	8372	.	-	0	ID=cds-WP_001537507.1;Parent=gene-CFSAN001082_RS37125;Dbxref=GenBank:WP_001537507.1;Name=WP_001537507.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461608.1;locus_tag=CFSAN001082_RS37125;product=cytochrome C assembly family protein;protein_id=WP_001537507.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	8538	9899	.	+	.	ID=gene-CFSAN001082_RS37130;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37130;old_locus_tag=CFSAN001082_13441
NZ_APAH01000262.1	Protein Homology	CDS	8538	9899	.	+	0	ID=cds-WP_000460052.1;Parent=gene-CFSAN001082_RS37130;Dbxref=GenBank:WP_000460052.1;Name=WP_000460052.1;Ontology_term=GO:0009306,GO:0003924,GO:0005048,GO:0005525,GO:0048501;gbkey=CDS;gene=ffh;go_component=signal recognition particle%2C plasma membrane targeting|0048501||IEA;go_function=GTPase activity|0003924||IEA,signal sequence binding|0005048||IEA,GTP binding|0005525||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130432.1;locus_tag=CFSAN001082_RS37130;product=signal recognition particle protein;protein_id=WP_000460052.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	10152	10400	.	+	.	ID=gene-CFSAN001082_RS37135;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37135;old_locus_tag=CFSAN001082_13446
NZ_APAH01000262.1	Protein Homology	CDS	10152	10400	.	+	0	ID=cds-WP_000256453.1;Parent=gene-CFSAN001082_RS37135;Dbxref=GenBank:WP_000256453.1;Name=WP_000256453.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsP;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000256453.1;locus_tag=CFSAN001082_RS37135;product=30S ribosomal protein S16;protein_id=WP_000256453.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	10419	10967	.	+	.	ID=gene-CFSAN001082_RS37140;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37140;old_locus_tag=CFSAN001082_13451
NZ_APAH01000262.1	Protein Homology	CDS	10419	10967	.	+	0	ID=cds-WP_000043266.1;Parent=gene-CFSAN001082_RS37140;Dbxref=GenBank:WP_000043266.1;Name=WP_000043266.1;Note=Essential for efficient processing of 16S rRNA;Ontology_term=GO:0006364,GO:0043022,GO:0005840;gbkey=CDS;gene=rimM;go_component=ribosome|0005840||IEA;go_function=ribosome binding|0043022||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000043333.1;locus_tag=CFSAN001082_RS37140;product=ribosome maturation factor RimM;protein_id=WP_000043266.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	11012	11779	.	+	.	ID=gene-CFSAN001082_RS37145;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37145;old_locus_tag=CFSAN001082_13456
NZ_APAH01000262.1	Protein Homology	CDS	11012	11779	.	+	0	ID=cds-WP_000469813.1;Parent=gene-CFSAN001082_RS37145;Dbxref=GenBank:WP_000469813.1;Name=WP_000469813.1;Ontology_term=GO:0030488,GO:0052906;gbkey=CDS;gene=trmD;go_function=tRNA (guanine(37)-N1)-methyltransferase activity|0052906||IEA;go_process=tRNA methylation|0030488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461604.1;locus_tag=CFSAN001082_RS37145;product=tRNA (guanosine(37)-N1)-methyltransferase TrmD;protein_id=WP_000469813.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	11820	12167	.	+	.	ID=gene-CFSAN001082_RS37150;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37150;old_locus_tag=CFSAN001082_13461
NZ_APAH01000262.1	Protein Homology	CDS	11820	12167	.	+	0	ID=cds-WP_000065257.1;Parent=gene-CFSAN001082_RS37150;Dbxref=GenBank:WP_000065257.1;Name=WP_000065257.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplS;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012768745.1;locus_tag=CFSAN001082_RS37150;product=50S ribosomal protein L19;protein_id=WP_000065257.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	12324	13544	.	-	.	ID=gene-CFSAN001082_RS37155;Name=dgcN;gbkey=Gene;gene=dgcN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37155;old_locus_tag=CFSAN001082_13466
NZ_APAH01000262.1	Protein Homology	CDS	12324	13544	.	-	0	ID=cds-WP_001030985.1;Parent=gene-CFSAN001082_RS37155;Dbxref=GenBank:WP_001030985.1;Name=WP_001030985.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;gene=dgcN;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461602.1;locus_tag=CFSAN001082_RS37155;product=diguanylate cyclase DgcN;protein_id=WP_001030985.1;transl_table=11
NZ_APAH01000262.1	RefSeq	gene	13537	14055	.	-	.	ID=gene-CFSAN001082_RS37160;Name=CFSAN001082_RS37160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37160;old_locus_tag=CFSAN001082_13471
NZ_APAH01000262.1	Protein Homology	CDS	13537	14055	.	-	0	ID=cds-WP_001212379.1;Parent=gene-CFSAN001082_RS37160;Dbxref=GenBank:WP_001212379.1;Name=WP_001212379.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461601.1;locus_tag=CFSAN001082_RS37160;product=YfiR family protein;protein_id=WP_001212379.1;transl_table=11
##sequence-region NZ_APAH01000263.1 1 202
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000263.1	RefSeq	region	1	202	.	+	.	ID=NZ_APAH01000263.1:1..202;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000264.1 1 12086
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000264.1	RefSeq	region	1	12086	.	+	.	ID=NZ_APAH01000264.1:1..12086;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000264.1	RefSeq	gene	96	1196	.	+	.	ID=gene-CFSAN001082_RS37165;Name=CFSAN001082_RS37165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37165;old_locus_tag=CFSAN001082_13481
NZ_APAH01000264.1	Protein Homology	CDS	96	1196	.	+	0	ID=cds-WP_023138879.1;Parent=gene-CFSAN001082_RS37165;Dbxref=GenBank:WP_023138879.1;Name=WP_023138879.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000828052.1;locus_tag=CFSAN001082_RS37165;product=YiiG family protein;protein_id=WP_023138879.1;transl_table=11
NZ_APAH01000264.1	RefSeq	gene	1551	1874	.	-	.	ID=gene-CFSAN001082_RS37170;Name=CFSAN001082_RS37170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37170;old_locus_tag=CFSAN001082_13486
NZ_APAH01000264.1	Protein Homology	CDS	1551	1874	.	-	0	ID=cds-WP_000527677.1;Parent=gene-CFSAN001082_RS37170;Dbxref=GenBank:WP_000527677.1;Name=WP_000527677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462921.1;locus_tag=CFSAN001082_RS37170;product=AzlD domain-containing protein;protein_id=WP_000527677.1;transl_table=11
NZ_APAH01000264.1	RefSeq	gene	1874	2533	.	-	.	ID=gene-CFSAN001082_RS37175;Name=CFSAN001082_RS37175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37175;old_locus_tag=CFSAN001082_13491
NZ_APAH01000264.1	Protein Homology	CDS	1874	2533	.	-	0	ID=cds-WP_023254450.1;Parent=gene-CFSAN001082_RS37175;Dbxref=GenBank:WP_023254450.1;Name=WP_023254450.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020,GO:1902495;gbkey=CDS;go_component=membrane|0016020||IEA,transmembrane transporter complex|1902495||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462922.1;locus_tag=CFSAN001082_RS37175;product=AzlC family ABC transporter permease;protein_id=WP_023254450.1;transl_table=11
NZ_APAH01000264.1	RefSeq	gene	2634	3182	.	+	.	ID=gene-CFSAN001082_RS37180;Name=CFSAN001082_RS37180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37180;old_locus_tag=CFSAN001082_13496
NZ_APAH01000264.1	Protein Homology	CDS	2634	3182	.	+	0	ID=cds-WP_001517951.1;Parent=gene-CFSAN001082_RS37180;Dbxref=GenBank:WP_001517951.1;Name=WP_001517951.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004855902.1;locus_tag=CFSAN001082_RS37180;product=helix-turn-helix domain-containing protein;protein_id=WP_001517951.1;transl_table=11
NZ_APAH01000264.1	RefSeq	gene	3271	3585	.	-	.	ID=gene-CFSAN001082_RS37185;Name=rhaM;gbkey=Gene;gene=rhaM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37185;old_locus_tag=CFSAN001082_13501
NZ_APAH01000264.1	Protein Homology	CDS	3271	3585	.	-	0	ID=cds-WP_000619478.1;Parent=gene-CFSAN001082_RS37185;Dbxref=GenBank:WP_000619478.1;Name=WP_000619478.1;Ontology_term=GO:0019299,GO:0016857,GO:0062192,GO:0005737;gbkey=CDS;gene=rhaM;go_component=cytoplasm|0005737||IEA;go_function=racemase and epimerase activity%2C acting on carbohydrates and derivatives|0016857||IEA,L-rhamnose mutarotase activity|0062192||IEA;go_process=rhamnose metabolic process|0019299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462924.1;locus_tag=CFSAN001082_RS37185;product=L-rhamnose mutarotase;protein_id=WP_000619478.1;transl_table=11
NZ_APAH01000264.1	RefSeq	gene	3582	4730	.	-	.	ID=gene-CFSAN001082_RS37190;Name=fucO;gbkey=Gene;gene=fucO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37190;old_locus_tag=CFSAN001082_13506
NZ_APAH01000264.1	Protein Homology	CDS	3582	4730	.	-	0	ID=cds-WP_023254451.1;Parent=gene-CFSAN001082_RS37190;Dbxref=GenBank:WP_023254451.1;Name=WP_023254451.1;Ontology_term=GO:0008912;gbkey=CDS;gene=fucO;go_function=lactaldehyde reductase activity|0008912||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462925.1;locus_tag=CFSAN001082_RS37190;product=lactaldehyde reductase;protein_id=WP_023254451.1;transl_table=11
NZ_APAH01000264.1	RefSeq	gene	4857	5684	.	-	.	ID=gene-CFSAN001082_RS37195;Name=rhaD;gbkey=Gene;gene=rhaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37195;old_locus_tag=CFSAN001082_13511
NZ_APAH01000264.1	Protein Homology	CDS	4857	5684	.	-	0	ID=cds-WP_001179685.1;Parent=gene-CFSAN001082_RS37195;Dbxref=GenBank:WP_001179685.1;Name=WP_001179685.1;gbkey=CDS;gene=rhaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462926.1;locus_tag=CFSAN001082_RS37195;product=rhamnulose-1-phosphate aldolase;protein_id=WP_001179685.1;transl_table=11
NZ_APAH01000264.1	RefSeq	gene	5827	7086	.	-	.	ID=gene-CFSAN001082_RS37200;Name=rhaA;gbkey=Gene;gene=rhaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37200;old_locus_tag=CFSAN001082_13516
NZ_APAH01000264.1	Protein Homology	CDS	5827	7086	.	-	0	ID=cds-WP_000211468.1;Parent=gene-CFSAN001082_RS37200;Dbxref=GenBank:WP_000211468.1;Name=WP_000211468.1;Ontology_term=GO:0019299,GO:0008740,GO:0030145;gbkey=CDS;gene=rhaA;go_function=L-rhamnose isomerase activity|0008740||IEA,manganese ion binding|0030145||IEA;go_process=rhamnose metabolic process|0019299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462927.1;locus_tag=CFSAN001082_RS37200;product=L-rhamnose isomerase;protein_id=WP_000211468.1;transl_table=11
NZ_APAH01000264.1	RefSeq	gene	7083	8552	.	-	.	ID=gene-CFSAN001082_RS37205;Name=rhaB;gbkey=Gene;gene=rhaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37205;old_locus_tag=CFSAN001082_13521
NZ_APAH01000264.1	Protein Homology	CDS	7083	8552	.	-	0	ID=cds-WP_023254452.1;Parent=gene-CFSAN001082_RS37205;Dbxref=GenBank:WP_023254452.1;Name=WP_023254452.1;Ontology_term=GO:0005975,GO:0019301,GO:0008993;gbkey=CDS;gene=rhaB;go_function=rhamnulokinase activity|0008993||IEA;go_process=carbohydrate metabolic process|0005975||IEA,rhamnose catabolic process|0019301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462928.1;locus_tag=CFSAN001082_RS37205;product=rhamnulokinase;protein_id=WP_023254452.1;transl_table=11
NZ_APAH01000264.1	RefSeq	gene	8840	9676	.	+	.	ID=gene-CFSAN001082_RS37210;Name=rhaS;gbkey=Gene;gene=rhaS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37210;old_locus_tag=CFSAN001082_13526
NZ_APAH01000264.1	Protein Homology	CDS	8840	9676	.	+	0	ID=cds-WP_001636299.1;Parent=gene-CFSAN001082_RS37210;Dbxref=GenBank:WP_001636299.1;Name=WP_001636299.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=rhaS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462929.1;locus_tag=CFSAN001082_RS37210;product=HTH-type transcriptional activator RhaS;protein_id=WP_001636299.1;transl_table=11
NZ_APAH01000264.1	RefSeq	gene	9829	10677	.	+	.	ID=gene-CFSAN001082_RS37215;Name=rhaR;gbkey=Gene;gene=rhaR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37215;old_locus_tag=CFSAN001082_13531
NZ_APAH01000264.1	Protein Homology	CDS	9829	10677	.	+	0	ID=cds-WP_000013290.1;Parent=gene-CFSAN001082_RS37215;Dbxref=GenBank:WP_000013290.1;Name=WP_000013290.1;gbkey=CDS;gene=rhaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462930.1;locus_tag=CFSAN001082_RS37215;product=HTH-type transcriptional activator RhaR;protein_id=WP_000013290.1;transl_table=11
NZ_APAH01000264.1	RefSeq	gene	10674	11708	.	-	.	ID=gene-CFSAN001082_RS37220;Name=rhaT;gbkey=Gene;gene=rhaT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37220;old_locus_tag=CFSAN001082_13536
NZ_APAH01000264.1	Protein Homology	CDS	10674	11708	.	-	0	ID=cds-WP_023254453.1;Parent=gene-CFSAN001082_RS37220;Dbxref=GenBank:WP_023254453.1;Name=WP_023254453.1;Ontology_term=GO:0008645,GO:0015153;gbkey=CDS;gene=rhaT;go_function=rhamnose transmembrane transporter activity|0015153||IEA;go_process=hexose transmembrane transport|0008645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462931.1;locus_tag=CFSAN001082_RS37220;product=L-rhamnose/proton symporter RhaT;protein_id=WP_023254453.1;transl_table=11
##sequence-region NZ_APAH01000265.1 1 8503
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000265.1	RefSeq	region	1	8503	.	+	.	ID=NZ_APAH01000265.1:1..8503;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000265.1	RefSeq	gene	17	559	.	+	.	ID=gene-CFSAN001082_RS37225;Name=CFSAN001082_RS37225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37225;old_locus_tag=CFSAN001082_13541
NZ_APAH01000265.1	Protein Homology	CDS	17	559	.	+	0	ID=cds-WP_000743357.1;Parent=gene-CFSAN001082_RS37225;Dbxref=GenBank:WP_000743357.1;Name=WP_000743357.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459026.1;locus_tag=CFSAN001082_RS37225;product=fimbrial protein BcfA;protein_id=WP_000743357.1;transl_table=11
NZ_APAH01000265.1	RefSeq	gene	660	1346	.	+	.	ID=gene-CFSAN001082_RS37230;Name=bcfB;gbkey=Gene;gene=bcfB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37230;old_locus_tag=CFSAN001082_13546
NZ_APAH01000265.1	Protein Homology	CDS	660	1346	.	+	0	ID=cds-WP_023254454.1;Parent=gene-CFSAN001082_RS37230;Dbxref=GenBank:WP_023254454.1;Name=WP_023254454.1;gbkey=CDS;gene=bcfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459027.1;locus_tag=CFSAN001082_RS37230;product=fimbrial biogenesis chaperone BcfB;protein_id=WP_023254454.1;transl_table=11
NZ_APAH01000265.1	RefSeq	gene	1351	3972	.	+	.	ID=gene-CFSAN001082_RS37235;Name=bcfC;gbkey=Gene;gene=bcfC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37235;old_locus_tag=CFSAN001082_13551
NZ_APAH01000265.1	Protein Homology	CDS	1351	3972	.	+	0	ID=cds-WP_023254455.1;Parent=gene-CFSAN001082_RS37235;Dbxref=GenBank:WP_023254455.1;Name=WP_023254455.1;gbkey=CDS;gene=bcfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459028.1;locus_tag=CFSAN001082_RS37235;product=fimbrial usher BcfC;protein_id=WP_023254455.1;transl_table=11
NZ_APAH01000265.1	RefSeq	gene	3973	4980	.	+	.	ID=gene-CFSAN001082_RS37240;Name=CFSAN001082_RS37240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37240;old_locus_tag=CFSAN001082_13556
NZ_APAH01000265.1	Protein Homology	CDS	3973	4980	.	+	0	ID=cds-WP_000701238.1;Parent=gene-CFSAN001082_RS37240;Dbxref=GenBank:WP_000701238.1;Name=WP_000701238.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459029.1;locus_tag=CFSAN001082_RS37240;product=fimbrial protein BcfD;protein_id=WP_000701238.1;transl_table=11
NZ_APAH01000265.1	RefSeq	gene	4981	5526	.	+	.	ID=gene-CFSAN001082_RS37245;Name=CFSAN001082_RS37245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37245;old_locus_tag=CFSAN001082_13561
NZ_APAH01000265.1	Protein Homology	CDS	4981	5526	.	+	0	ID=cds-WP_023254456.1;Parent=gene-CFSAN001082_RS37245;Dbxref=GenBank:WP_023254456.1;Name=WP_023254456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459030.1;locus_tag=CFSAN001082_RS37245;product=fimbrial protein BcfE;protein_id=WP_023254456.1;transl_table=11
NZ_APAH01000265.1	RefSeq	gene	5542	6060	.	+	.	ID=gene-CFSAN001082_RS37250;Name=CFSAN001082_RS37250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37250;old_locus_tag=CFSAN001082_13566
NZ_APAH01000265.1	Protein Homology	CDS	5542	6060	.	+	0	ID=cds-WP_001243232.1;Parent=gene-CFSAN001082_RS37250;Dbxref=GenBank:WP_001243232.1;Name=WP_001243232.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459031.1;locus_tag=CFSAN001082_RS37250;product=fimbrial protein BcfF;protein_id=WP_001243232.1;transl_table=11
NZ_APAH01000265.1	RefSeq	gene	6026	6757	.	+	.	ID=gene-CFSAN001082_RS37255;Name=bcfG;gbkey=Gene;gene=bcfG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37255;old_locus_tag=CFSAN001082_13571
NZ_APAH01000265.1	Protein Homology	CDS	6026	6757	.	+	0	ID=cds-WP_001135034.1;Parent=gene-CFSAN001082_RS37255;Dbxref=GenBank:WP_001135034.1;Name=WP_001135034.1;gbkey=CDS;gene=bcfG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459032.1;locus_tag=CFSAN001082_RS37255;product=fimbrial chaperone BcfG;protein_id=WP_001135034.1;transl_table=11
NZ_APAH01000265.1	RefSeq	gene	6822	7667	.	+	.	ID=gene-CFSAN001082_RS37260;Name=CFSAN001082_RS37260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37260;old_locus_tag=CFSAN001082_13576
NZ_APAH01000265.1	Protein Homology	CDS	6822	7667	.	+	0	ID=cds-WP_017441782.1;Parent=gene-CFSAN001082_RS37260;Dbxref=GenBank:WP_017441782.1;Name=WP_017441782.1;Ontology_term=GO:0015036;gbkey=CDS;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459033.1;locus_tag=CFSAN001082_RS37260;product=DsbA family protein;protein_id=WP_017441782.1;transl_table=11
NZ_APAH01000265.1	RefSeq	gene	7706	7993	.	+	.	ID=gene-CFSAN001082_RS37265;Name=CFSAN001082_RS37265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37265;old_locus_tag=CFSAN001082_13581
NZ_APAH01000265.1	Protein Homology	CDS	7706	7993	.	+	0	ID=cds-WP_017441783.1;Parent=gene-CFSAN001082_RS37265;Dbxref=GenBank:WP_017441783.1;Name=WP_017441783.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000839835.1;locus_tag=CFSAN001082_RS37265;product=hypothetical protein;protein_id=WP_017441783.1;transl_table=11
NZ_APAH01000265.1	RefSeq	gene	8093	8503	.	-	.	ID=gene-CFSAN001082_RS37270;Name=CFSAN001082_RS37270;end_range=8503,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37270;old_locus_tag=CFSAN001082_13586;partial=true
NZ_APAH01000265.1	Protein Homology	CDS	8093	8503	.	-	0	ID=cds-WP_023254457.1;Parent=gene-CFSAN001082_RS37270;Dbxref=GenBank:WP_023254457.1;Name=WP_023254457.1;Ontology_term=GO:0003677;end_range=8503,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459034.1;locus_tag=CFSAN001082_RS37270;partial=true;product=winged helix-turn-helix domain-containing protein;protein_id=WP_023254457.1;transl_table=11
##sequence-region NZ_APAH01000266.1 1 16835
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000266.1	RefSeq	region	1	16835	.	+	.	ID=NZ_APAH01000266.1:1..16835;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000266.1	RefSeq	gene	1	783	.	+	.	ID=gene-CFSAN001082_RS37275;Name=CFSAN001082_RS37275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37275;old_locus_tag=CFSAN001082_13591;partial=true;start_range=.,1
NZ_APAH01000266.1	Protein Homology	CDS	1	783	.	+	0	ID=cds-WP_024150299.1;Parent=gene-CFSAN001082_RS37275;Dbxref=GenBank:WP_024150299.1;Name=WP_024150299.1;Ontology_term=GO:0006814,GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462261.1;locus_tag=CFSAN001082_RS37275;partial=true;product=sodium ion-translocating decarboxylase subunit beta;protein_id=WP_024150299.1;start_range=.,1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	803	1534	.	+	.	ID=gene-CFSAN001082_RS37280;Name=CFSAN001082_RS37280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37280;old_locus_tag=CFSAN001082_13596
NZ_APAH01000266.1	Protein Homology	CDS	803	1534	.	+	0	ID=cds-WP_023254459.1;Parent=gene-CFSAN001082_RS37280;Dbxref=GenBank:WP_023254459.1;Name=WP_023254459.1;Ontology_term=GO:0016310,GO:0005524,GO:0046917;gbkey=CDS;go_function=ATP binding|0005524||IEA,triphosphoribosyl-dephospho-CoA synthase activity|0046917||IEA;go_process=phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462260.1;locus_tag=CFSAN001082_RS37280;product=triphosphoribosyl-dephospho-CoA synthase;protein_id=WP_023254459.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	1568	2638	.	-	.	ID=gene-CFSAN001082_RS37285;Name=degS;gbkey=Gene;gene=degS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37285;old_locus_tag=CFSAN001082_13601
NZ_APAH01000266.1	Protein Homology	CDS	1568	2638	.	-	0	ID=cds-WP_000497705.1;Parent=gene-CFSAN001082_RS37285;Dbxref=GenBank:WP_000497705.1;Name=WP_000497705.1;Ontology_term=GO:0006508,GO:0004252;gbkey=CDS;gene=degS;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462259.1;locus_tag=CFSAN001082_RS37285;product=outer membrane-stress sensor serine endopeptidase DegS;protein_id=WP_000497705.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	2731	4098	.	-	.	ID=gene-CFSAN001082_RS37290;Name=degQ;gbkey=Gene;gene=degQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37290;old_locus_tag=CFSAN001082_13606
NZ_APAH01000266.1	Protein Homology	CDS	2731	4098	.	-	0	ID=cds-WP_000716690.1;Parent=gene-CFSAN001082_RS37290;Dbxref=GenBank:WP_000716690.1;Name=WP_000716690.1;Ontology_term=GO:0006508,GO:0004252,GO:0005515;gbkey=CDS;gene=degQ;go_function=serine-type endopeptidase activity|0004252||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462258.1;locus_tag=CFSAN001082_RS37290;product=serine endoprotease DegQ;protein_id=WP_000716690.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	4255	4653	.	-	.	ID=gene-CFSAN001082_RS37295;Name=zapG;gbkey=Gene;gene=zapG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37295;old_locus_tag=CFSAN001082_13611
NZ_APAH01000266.1	Protein Homology	CDS	4255	4653	.	-	0	ID=cds-WP_001519074.1;Parent=gene-CFSAN001082_RS37295;Dbxref=GenBank:WP_001519074.1;Name=WP_001519074.1;gbkey=CDS;gene=zapG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121352.1;locus_tag=CFSAN001082_RS37295;product=Z-ring associated protein ZapG;protein_id=WP_001519074.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	4846	5970	.	+	.	ID=gene-CFSAN001082_RS37300;Name=zapE;gbkey=Gene;gene=zapE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37300;old_locus_tag=CFSAN001082_13616
NZ_APAH01000266.1	Protein Homology	CDS	4846	5970	.	+	0	ID=cds-WP_001191220.1;Parent=gene-CFSAN001082_RS37300;Dbxref=GenBank:WP_001191220.1;Name=WP_001191220.1;Ontology_term=GO:0051301,GO:0005524,GO:0016887;gbkey=CDS;gene=zapE;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462256.1;locus_tag=CFSAN001082_RS37300;product=cell division protein ZapE;protein_id=WP_001191220.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	6271	6699	.	+	.	ID=gene-CFSAN001082_RS37305;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37305;old_locus_tag=CFSAN001082_13621
NZ_APAH01000266.1	Protein Homology	CDS	6271	6699	.	+	0	ID=cds-WP_000847559.1;Parent=gene-CFSAN001082_RS37305;Dbxref=GenBank:WP_000847559.1;Name=WP_000847559.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplM;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010847760.1;locus_tag=CFSAN001082_RS37305;product=50S ribosomal protein L13;protein_id=WP_000847559.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	6715	7107	.	+	.	ID=gene-CFSAN001082_RS37310;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37310;old_locus_tag=CFSAN001082_13626
NZ_APAH01000266.1	Protein Homology	CDS	6715	7107	.	+	0	ID=cds-WP_000829815.1;Parent=gene-CFSAN001082_RS37310;Dbxref=GenBank:WP_000829815.1;Name=WP_000829815.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000829824.1;locus_tag=CFSAN001082_RS37310;product=30S ribosomal protein S9;protein_id=WP_000829815.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	7421	8059	.	+	.	ID=gene-CFSAN001082_RS37315;Name=sspA;gbkey=Gene;gene=sspA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37315;old_locus_tag=CFSAN001082_13631
NZ_APAH01000266.1	Protein Homology	CDS	7421	8059	.	+	0	ID=cds-WP_000257298.1;Parent=gene-CFSAN001082_RS37315;Dbxref=GenBank:WP_000257298.1;Name=WP_000257298.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;gene=sspA;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000257299.1;locus_tag=CFSAN001082_RS37315;product=stringent starvation protein SspA;protein_id=WP_000257298.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	8065	8565	.	+	.	ID=gene-CFSAN001082_RS37320;Name=sspB;gbkey=Gene;gene=sspB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37320;old_locus_tag=CFSAN001082_13636
NZ_APAH01000266.1	Protein Homology	CDS	8065	8565	.	+	0	ID=cds-WP_000366112.1;Parent=gene-CFSAN001082_RS37320;Dbxref=GenBank:WP_000366112.1;Name=WP_000366112.1;gbkey=CDS;gene=sspB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462251.1;locus_tag=CFSAN001082_RS37320;product=ClpXP protease specificity-enhancing factor;protein_id=WP_000366112.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	8674	9465	.	+	.	ID=gene-CFSAN001082_RS37325;Name=nanR;gbkey=Gene;gene=nanR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37325;old_locus_tag=CFSAN001082_13641
NZ_APAH01000266.1	Protein Homology	CDS	8674	9465	.	+	0	ID=cds-WP_000382926.1;Parent=gene-CFSAN001082_RS37325;Dbxref=GenBank:WP_000382926.1;Name=WP_000382926.1;gbkey=CDS;gene=nanR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462250.1;locus_tag=CFSAN001082_RS37325;product=transcriptional regulator NanR;protein_id=WP_000382926.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	9600	10493	.	+	.	ID=gene-CFSAN001082_RS37330;Name=nanA;gbkey=Gene;gene=nanA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37330;old_locus_tag=CFSAN001082_13646
NZ_APAH01000266.1	Protein Homology	CDS	9600	10493	.	+	0	ID=cds-WP_001029667.1;Parent=gene-CFSAN001082_RS37330;Dbxref=GenBank:WP_001029667.1;Name=WP_001029667.1;Ontology_term=GO:0005975,GO:0008747;gbkey=CDS;gene=nanA;go_function=N-acetylneuraminate lyase activity|0008747||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462249.1;locus_tag=CFSAN001082_RS37330;product=N-acetylneuraminate lyase;protein_id=WP_001029667.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	10609	12099	.	+	.	ID=gene-CFSAN001082_RS37335;Name=nanT;gbkey=Gene;gene=nanT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37335;old_locus_tag=CFSAN001082_13651
NZ_APAH01000266.1	Protein Homology	CDS	10609	12099	.	+	0	ID=cds-WP_000108074.1;Parent=gene-CFSAN001082_RS37335;Dbxref=GenBank:WP_000108074.1;Name=WP_000108074.1;gbkey=CDS;gene=nanT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462248.1;locus_tag=CFSAN001082_RS37335;product=sialic acid transporter NanT;protein_id=WP_000108074.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	12146	12835	.	+	.	ID=gene-CFSAN001082_RS37340;Name=CFSAN001082_RS37340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37340;old_locus_tag=CFSAN001082_13656
NZ_APAH01000266.1	Protein Homology	CDS	12146	12835	.	+	0	ID=cds-WP_000054439.1;Parent=gene-CFSAN001082_RS37340;Dbxref=GenBank:WP_000054439.1;Name=WP_000054439.1;Ontology_term=GO:0005975,GO:0006051,GO:0019262,GO:0047465;gbkey=CDS;go_function=N-acylglucosamine-6-phosphate 2-epimerase activity|0047465||IEA;go_process=carbohydrate metabolic process|0005975||IEA,N-acetylmannosamine metabolic process|0006051||IEA,N-acetylneuraminate catabolic process|0019262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462247.1;locus_tag=CFSAN001082_RS37340;product=N-acetylmannosamine-6-phosphate 2-epimerase;protein_id=WP_000054439.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	12832	13707	.	+	.	ID=gene-CFSAN001082_RS37345;Name=nanK;gbkey=Gene;gene=nanK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37345;old_locus_tag=CFSAN001082_13661
NZ_APAH01000266.1	Protein Homology	CDS	12832	13707	.	+	0	ID=cds-WP_023233634.1;Parent=gene-CFSAN001082_RS37345;Dbxref=GenBank:WP_023233634.1;Name=WP_023233634.1;Ontology_term=GO:0019262,GO:0005524,GO:0009384;gbkey=CDS;gene=nanK;go_function=ATP binding|0005524||IEA,N-acylmannosamine kinase activity|0009384||IEA;go_process=N-acetylneuraminate catabolic process|0019262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462246.1;locus_tag=CFSAN001082_RS37345;product=N-acetylmannosamine kinase;protein_id=WP_023233634.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	13704	14171	.	+	.	ID=gene-CFSAN001082_RS37350;Name=nanQ;gbkey=Gene;gene=nanQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37350;old_locus_tag=CFSAN001082_13666
NZ_APAH01000266.1	Protein Homology	CDS	13704	14171	.	+	0	ID=cds-WP_001648383.1;Parent=gene-CFSAN001082_RS37350;Dbxref=GenBank:WP_001648383.1;Name=WP_001648383.1;Ontology_term=GO:0006974;gbkey=CDS;gene=nanQ;go_process=DNA damage response|0006974||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462245.1;locus_tag=CFSAN001082_RS37350;product=N-acetylneuraminate anomerase;protein_id=WP_001648383.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	14253	15533	.	-	.	ID=gene-CFSAN001082_RS37355;Name=CFSAN001082_RS37355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37355;old_locus_tag=CFSAN001082_13671
NZ_APAH01000266.1	Protein Homology	CDS	14253	15533	.	-	0	ID=cds-WP_023254460.1;Parent=gene-CFSAN001082_RS37355;Dbxref=GenBank:WP_023254460.1;Name=WP_023254460.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462244.1;locus_tag=CFSAN001082_RS37355;product=cytosine deaminase;protein_id=WP_023254460.1;transl_table=11
NZ_APAH01000266.1	RefSeq	gene	15520	16773	.	-	.	ID=gene-CFSAN001082_RS37360;Name=codB;gbkey=Gene;gene=codB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37360;old_locus_tag=CFSAN001082_13676
NZ_APAH01000266.1	Protein Homology	CDS	15520	16773	.	-	0	ID=cds-WP_024150300.1;Parent=gene-CFSAN001082_RS37360;Dbxref=GenBank:WP_024150300.1;Name=WP_024150300.1;Ontology_term=GO:0055085,GO:0015209,GO:0016020;gbkey=CDS;gene=codB;go_component=membrane|0016020||IEA;go_function=cytosine transmembrane transporter activity|0015209||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462243.1;locus_tag=CFSAN001082_RS37360;product=cytosine permease;protein_id=WP_024150300.1;transl_table=11
##sequence-region NZ_APAH01000267.1 1 539
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000267.1	RefSeq	region	1	539	.	+	.	ID=NZ_APAH01000267.1:1..539;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000267.1	RefSeq	gene	26	427	.	-	.	ID=gene-CFSAN001082_RS37365;Name=spiC;gbkey=Gene;gene=spiC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37365;old_locus_tag=CFSAN001082_13681
NZ_APAH01000267.1	Protein Homology	CDS	26	427	.	-	0	ID=cds-WP_001562740.1;Parent=gene-CFSAN001082_RS37365;Dbxref=GenBank:WP_001562740.1;Name=WP_001562740.1;gbkey=CDS;gene=spiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460358.1;locus_tag=CFSAN001082_RS37365;product=SPI-2 type III secretion system protein SpiC;protein_id=WP_001562740.1;transl_table=11
##sequence-region NZ_APAH01000268.1 1 5242
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000268.1	RefSeq	region	1	5242	.	+	.	ID=NZ_APAH01000268.1:1..5242;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000268.1	RefSeq	gene	141	2132	.	-	.	ID=gene-CFSAN001082_RS37370;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37370;old_locus_tag=CFSAN001082_13686
NZ_APAH01000268.1	Protein Homology	CDS	141	2132	.	-	0	ID=cds-WP_023254462.1;Parent=gene-CFSAN001082_RS37370;Dbxref=GenBank:WP_023254462.1;Name=WP_023254462.1;Ontology_term=GO:0004802;gbkey=CDS;gene=tkt;go_function=transketolase activity|0004802||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461992.1;locus_tag=CFSAN001082_RS37370;product=transketolase;protein_id=WP_023254462.1;transl_table=11
NZ_APAH01000268.1	RefSeq	gene	2408	3166	.	+	.	ID=gene-CFSAN001082_RS37375;Name=CFSAN001082_RS37375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37375;old_locus_tag=CFSAN001082_13691
NZ_APAH01000268.1	Protein Homology	CDS	2408	3166	.	+	0	ID=cds-WP_000701824.1;Parent=gene-CFSAN001082_RS37375;Dbxref=GenBank:WP_000701824.1;Name=WP_000701824.1;Ontology_term=GO:0004222,GO:0008237,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461993.1;locus_tag=CFSAN001082_RS37375;product=M48 family metallopeptidase;protein_id=WP_000701824.1;transl_table=11
NZ_APAH01000268.1	RefSeq	pseudogene	3179	3263	.	-	.	ID=gene-CFSAN001082_RS49235;Name=CFSAN001082_RS49235;end_range=3263,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49235;partial=true;pseudo=true;start_range=.,3179
NZ_APAH01000268.1	Protein Homology	CDS	3179	3263	.	-	0	ID=cds-CFSAN001082_RS49235;Parent=gene-CFSAN001082_RS49235;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=3263,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=CFSAN001082_RS49235;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3179;transl_table=11
NZ_APAH01000268.1	RefSeq	gene	3267	4187	.	-	.	ID=gene-CFSAN001082_RS37380;Name=speB;gbkey=Gene;gene=speB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37380;old_locus_tag=CFSAN001082_13696
NZ_APAH01000268.1	Protein Homology	CDS	3267	4187	.	-	0	ID=cds-WP_000105550.1;Parent=gene-CFSAN001082_RS37380;Dbxref=GenBank:WP_000105550.1;Name=WP_000105550.1;Ontology_term=GO:0008295,GO:0008783;gbkey=CDS;gene=speB;go_function=agmatinase activity|0008783||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461994.1;locus_tag=CFSAN001082_RS37380;product=agmatinase;protein_id=WP_000105550.1;transl_table=11
NZ_APAH01000268.1	RefSeq	gene	4392	5240	.	-	.	ID=gene-CFSAN001082_RS37385;Name=CFSAN001082_RS37385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37385;old_locus_tag=CFSAN001082_13701
NZ_APAH01000268.1	Protein Homology	CDS	4392	5240	.	-	0	ID=cds-WP_023254463.1;Parent=gene-CFSAN001082_RS37385;Dbxref=GenBank:WP_023254463.1;Name=WP_023254463.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001727266.1;locus_tag=CFSAN001082_RS37385;product=alpha/beta fold hydrolase;protein_id=WP_023254463.1;transl_table=11
##sequence-region NZ_APAH01000269.1 1 7651
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000269.1	RefSeq	region	1	7651	.	+	.	ID=NZ_APAH01000269.1:1..7651;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000269.1	RefSeq	gene	1	994	.	+	.	ID=gene-CFSAN001082_RS0123620;Name=CFSAN001082_RS0123620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123620;old_locus_tag=CFSAN001082_13706;partial=true;start_range=.,1
NZ_APAH01000269.1	Protein Homology	CDS	1	994	.	+	1	ID=cds-WP_023254464.1;Parent=gene-CFSAN001082_RS0123620;Dbxref=GenBank:WP_023254464.1;Name=WP_023254464.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459433.1;locus_tag=CFSAN001082_RS0123620;partial=true;product=tetratricopeptide repeat protein;protein_id=WP_023254464.1;start_range=.,1;transl_table=11
NZ_APAH01000269.1	RefSeq	gene	1006	2475	.	+	.	ID=gene-CFSAN001082_RS37390;Name=CFSAN001082_RS37390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37390;old_locus_tag=CFSAN001082_13711
NZ_APAH01000269.1	Protein Homology	CDS	1006	2475	.	+	0	ID=cds-WP_023254465.1;Parent=gene-CFSAN001082_RS37390;Dbxref=GenBank:WP_023254465.1;Name=WP_023254465.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524005.1;locus_tag=CFSAN001082_RS37390;product=SEL1-like repeat protein;protein_id=WP_023254465.1;transl_table=11
NZ_APAH01000269.1	RefSeq	gene	2523	3413	.	-	.	ID=gene-CFSAN001082_RS37395;Name=cyoE;gbkey=Gene;gene=cyoE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37395;old_locus_tag=CFSAN001082_13716
NZ_APAH01000269.1	Protein Homology	CDS	2523	3413	.	-	0	ID=cds-WP_000971352.1;Parent=gene-CFSAN001082_RS37395;Dbxref=GenBank:WP_000971352.1;Name=WP_000971352.1;Ontology_term=GO:0048034,GO:0008495,GO:0016020;gbkey=CDS;gene=cyoE;go_component=membrane|0016020||IEA;go_function=protoheme IX farnesyltransferase activity|0008495||IEA;go_process=heme O biosynthetic process|0048034||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459435.1;locus_tag=CFSAN001082_RS37395;product=heme o synthase;protein_id=WP_000971352.1;transl_table=11
NZ_APAH01000269.1	RefSeq	gene	3425	3754	.	-	.	ID=gene-CFSAN001082_RS37400;Name=CFSAN001082_RS37400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37400;old_locus_tag=CFSAN001082_13721
NZ_APAH01000269.1	Protein Homology	CDS	3425	3754	.	-	0	ID=cds-WP_000019878.1;Parent=gene-CFSAN001082_RS37400;Dbxref=GenBank:WP_000019878.1;Name=WP_000019878.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459436.1;locus_tag=CFSAN001082_RS37400;product=cytochrome o ubiquinol oxidase subunit IV;protein_id=WP_000019878.1;transl_table=11
NZ_APAH01000269.1	RefSeq	gene	3754	4368	.	-	.	ID=gene-CFSAN001082_RS37405;Name=CFSAN001082_RS37405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37405;old_locus_tag=CFSAN001082_13726
NZ_APAH01000269.1	Protein Homology	CDS	3754	4368	.	-	0	ID=cds-WP_000179833.1;Parent=gene-CFSAN001082_RS37405;Dbxref=GenBank:WP_000179833.1;Name=WP_000179833.1;Ontology_term=GO:0022904,GO:0004129;gbkey=CDS;go_function=cytochrome-c oxidase activity|0004129||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459437.1;locus_tag=CFSAN001082_RS37405;product=cytochrome o ubiquinol oxidase subunit III;protein_id=WP_000179833.1;transl_table=11
NZ_APAH01000269.1	RefSeq	gene	4358	6349	.	-	.	ID=gene-CFSAN001082_RS37410;Name=cyoB;gbkey=Gene;gene=cyoB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37410;old_locus_tag=CFSAN001082_13731
NZ_APAH01000269.1	Protein Homology	CDS	4358	6349	.	-	0	ID=cds-WP_000467158.1;Parent=gene-CFSAN001082_RS37410;Dbxref=GenBank:WP_000467158.1;Name=WP_000467158.1;Ontology_term=GO:0004129;gbkey=CDS;gene=cyoB;go_function=cytochrome-c oxidase activity|0004129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002444673.1;locus_tag=CFSAN001082_RS37410;product=cytochrome o ubiquinol oxidase subunit I;protein_id=WP_000467158.1;transl_table=11
NZ_APAH01000269.1	RefSeq	gene	6360	7316	.	-	.	ID=gene-CFSAN001082_RS37415;Name=cyoA;gbkey=Gene;gene=cyoA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37415;old_locus_tag=CFSAN001082_13736
NZ_APAH01000269.1	Protein Homology	CDS	6360	7316	.	-	0	ID=cds-WP_001239449.1;Parent=gene-CFSAN001082_RS37415;Dbxref=GenBank:WP_001239449.1;Name=WP_001239449.1;Ontology_term=GO:0022900,GO:0004129;gbkey=CDS;gene=cyoA;go_function=cytochrome-c oxidase activity|0004129||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459439.1;locus_tag=CFSAN001082_RS37415;product=cytochrome o ubiquinol oxidase subunit II;protein_id=WP_001239449.1;transl_table=11
##sequence-region NZ_APAH01000270.1 1 1036
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000270.1	RefSeq	region	1	1036	.	+	.	ID=NZ_APAH01000270.1:1..1036;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000270.1	RefSeq	pseudogene	1	363	.	+	.	ID=gene-CFSAN001082_RS37420;Name=CFSAN001082_RS37420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS37420;old_locus_tag=CFSAN001082_13741;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000270.1	Protein Homology	CDS	1	363	.	+	0	ID=cds-CFSAN001082_RS37420;Parent=gene-CFSAN001082_RS37420;Note=involved in bacterial survival in the host cell%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460590.1;locus_tag=CFSAN001082_RS37420;partial=true;product=pathogenicity island 2 effector protein SseJ;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000270.1	RefSeq	gene	484	828	.	-	.	ID=gene-CFSAN001082_RS37425;Name=CFSAN001082_RS37425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37425;old_locus_tag=CFSAN001082_13746
NZ_APAH01000270.1	Protein Homology	CDS	484	828	.	-	0	ID=cds-WP_000281191.1;Parent=gene-CFSAN001082_RS37425;Dbxref=GenBank:WP_000281191.1;Name=WP_000281191.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460591.1;locus_tag=CFSAN001082_RS37425;product=DUF1294 domain-containing protein;protein_id=WP_000281191.1;transl_table=11
##sequence-region NZ_APAH01000271.1 1 2335
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000271.1	RefSeq	region	1	2335	.	+	.	ID=NZ_APAH01000271.1:1..2335;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000271.1	RefSeq	gene	45	266	.	-	.	ID=gene-CFSAN001082_RS0123625;Name=CFSAN001082_RS0123625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123625
NZ_APAH01000271.1	Protein Homology	CDS	45	266	.	-	0	ID=cds-WP_031612896.1;Parent=gene-CFSAN001082_RS0123625;Dbxref=GenBank:WP_031612896.1;Name=WP_031612896.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463181.1;locus_tag=CFSAN001082_RS0123625;product=hypothetical protein;protein_id=WP_031612896.1;transl_table=11
NZ_APAH01000271.1	RefSeq	gene	584	877	.	+	.	ID=gene-CFSAN001082_RS37430;Name=CFSAN001082_RS37430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37430;old_locus_tag=CFSAN001082_13751
NZ_APAH01000271.1	Protein Homology	CDS	584	877	.	+	0	ID=cds-WP_001271379.1;Parent=gene-CFSAN001082_RS37430;Dbxref=GenBank:WP_001271379.1;Name=WP_001271379.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463182.1;locus_tag=CFSAN001082_RS37430;product=DUF1778 domain-containing protein;protein_id=WP_001271379.1;transl_table=11
NZ_APAH01000271.1	RefSeq	gene	874	1365	.	+	.	ID=gene-CFSAN001082_RS37435;Name=CFSAN001082_RS37435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37435;old_locus_tag=CFSAN001082_13756
NZ_APAH01000271.1	Protein Homology	CDS	874	1365	.	+	0	ID=cds-WP_000625911.1;Parent=gene-CFSAN001082_RS37435;Dbxref=GenBank:WP_000625911.1;Name=WP_000625911.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463183.1;locus_tag=CFSAN001082_RS37435;product=GNAT family N-acetyltransferase;protein_id=WP_000625911.1;transl_table=11
NZ_APAH01000271.1	RefSeq	pseudogene	1580	1828	.	+	.	ID=gene-CFSAN001082_RS47920;Name=CFSAN001082_RS47920;end_range=1828,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47920;partial=true;pseudo=true;start_range=.,1580
NZ_APAH01000271.1	Protein Homology	CDS	1580	1828	.	+	0	ID=cds-CFSAN001082_RS47920;Parent=gene-CFSAN001082_RS47920;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1828,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011920327.1;locus_tag=CFSAN001082_RS47920;partial=true;product=IS481 family transposase;pseudo=true;start_range=.,1580;transl_table=11
NZ_APAH01000271.1	RefSeq	gene	1877	2035	.	+	.	ID=gene-CFSAN001082_RS48555;Name=CFSAN001082_RS48555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48555;old_locus_tag=CFSAN001082_13761
NZ_APAH01000271.1	GeneMarkS-2+	CDS	1877	2035	.	+	0	ID=cds-WP_170916894.1;Parent=gene-CFSAN001082_RS48555;Dbxref=GenBank:WP_170916894.1;Name=WP_170916894.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48555;product=hypothetical protein;protein_id=WP_170916894.1;transl_table=11
NZ_APAH01000271.1	RefSeq	gene	2103	2335	.	-	.	ID=gene-CFSAN001082_RS37440;Name=CFSAN001082_RS37440;end_range=2335,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37440;old_locus_tag=CFSAN001082_13766;partial=true
NZ_APAH01000271.1	GeneMarkS-2+	CDS	2103	2335	.	-	2	ID=cds-WP_023254468.1;Parent=gene-CFSAN001082_RS37440;Dbxref=GenBank:WP_023254468.1;Name=WP_023254468.1;end_range=2335,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS37440;partial=true;product=hypothetical protein;protein_id=WP_023254468.1;transl_table=11
##sequence-region NZ_APAH01000272.1 1 48646
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000272.1	RefSeq	region	1	48646	.	+	.	ID=NZ_APAH01000272.1:1..48646;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000272.1	RefSeq	gene	151	1260	.	+	.	ID=gene-CFSAN001082_RS37445;Name=livK;gbkey=Gene;gene=livK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37445;old_locus_tag=CFSAN001082_13771
NZ_APAH01000272.1	Protein Homology	CDS	151	1260	.	+	0	ID=cds-WP_000822976.1;Parent=gene-CFSAN001082_RS37445;Dbxref=GenBank:WP_000822976.1;Name=WP_000822976.1;gbkey=CDS;gene=livK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462465.1;locus_tag=CFSAN001082_RS37445;product=high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK;protein_id=WP_000822976.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	1320	2246	.	+	.	ID=gene-CFSAN001082_RS37450;Name=livH;gbkey=Gene;gene=livH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37450;old_locus_tag=CFSAN001082_13776
NZ_APAH01000272.1	Protein Homology	CDS	1320	2246	.	+	0	ID=cds-WP_000003005.1;Parent=gene-CFSAN001082_RS37450;Dbxref=GenBank:WP_000003005.1;Name=WP_000003005.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=livH;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010436488.1;locus_tag=CFSAN001082_RS37450;product=high-affinity branched-chain amino acid ABC transporter permease LivH;protein_id=WP_000003005.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	2243	3520	.	+	.	ID=gene-CFSAN001082_RS37455;Name=livM;gbkey=Gene;gene=livM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37455;old_locus_tag=CFSAN001082_13781
NZ_APAH01000272.1	Protein Homology	CDS	2243	3520	.	+	0	ID=cds-WP_000803766.1;Parent=gene-CFSAN001082_RS37455;Dbxref=GenBank:WP_000803766.1;Name=WP_000803766.1;gbkey=CDS;gene=livM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462463.1;locus_tag=CFSAN001082_RS37455;product=branched chain amino acid ABC transporter permease LivM;protein_id=WP_000803766.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	3517	4284	.	+	.	ID=gene-CFSAN001082_RS37460;Name=livG;gbkey=Gene;gene=livG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37460;old_locus_tag=CFSAN001082_13786
NZ_APAH01000272.1	Protein Homology	CDS	3517	4284	.	+	0	ID=cds-WP_000082083.1;Parent=gene-CFSAN001082_RS37460;Dbxref=GenBank:WP_000082083.1;Name=WP_000082083.1;gbkey=CDS;gene=livG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000084170.1;locus_tag=CFSAN001082_RS37460;product=high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG;protein_id=WP_000082083.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	4286	4999	.	+	.	ID=gene-CFSAN001082_RS37465;Name=livF;gbkey=Gene;gene=livF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37465;old_locus_tag=CFSAN001082_13791
NZ_APAH01000272.1	Protein Homology	CDS	4286	4999	.	+	0	ID=cds-WP_000416114.1;Parent=gene-CFSAN001082_RS37465;Dbxref=GenBank:WP_000416114.1;Name=WP_000416114.1;gbkey=CDS;gene=livF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462461.1;locus_tag=CFSAN001082_RS37465;product=high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;protein_id=WP_000416114.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	5163	5441	.	+	.	ID=gene-CFSAN001082_RS37470;Name=CFSAN001082_RS37470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37470;old_locus_tag=CFSAN001082_13796
NZ_APAH01000272.1	Protein Homology	CDS	5163	5441	.	+	0	ID=cds-WP_000621260.1;Parent=gene-CFSAN001082_RS37470;Dbxref=GenBank:WP_000621260.1;Name=WP_000621260.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000621258.1;locus_tag=CFSAN001082_RS37470;product=hypothetical protein;protein_id=WP_000621260.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	5674	6990	.	+	.	ID=gene-CFSAN001082_RS37475;Name=ugpB;gbkey=Gene;gene=ugpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37475;old_locus_tag=CFSAN001082_13801
NZ_APAH01000272.1	Protein Homology	CDS	5674	6990	.	+	0	ID=cds-WP_000624747.1;Parent=gene-CFSAN001082_RS37475;Dbxref=GenBank:WP_000624747.1;Name=WP_000624747.1;Ontology_term=GO:0055085;gbkey=CDS;gene=ugpB;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462458.1;locus_tag=CFSAN001082_RS37475;product=sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB;protein_id=WP_000624747.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	7095	7982	.	+	.	ID=gene-CFSAN001082_RS37480;Name=ugpA;gbkey=Gene;gene=ugpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37480;old_locus_tag=CFSAN001082_13806
NZ_APAH01000272.1	Protein Homology	CDS	7095	7982	.	+	0	ID=cds-WP_000099303.1;Parent=gene-CFSAN001082_RS37480;Dbxref=GenBank:WP_000099303.1;Name=WP_000099303.1;gbkey=CDS;gene=ugpA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000099274.1;locus_tag=CFSAN001082_RS37480;product=sn-glycerol-3-phosphate ABC transporter permease UgpA;protein_id=WP_000099303.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	7979	8824	.	+	.	ID=gene-CFSAN001082_RS37485;Name=ugpE;gbkey=Gene;gene=ugpE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37485;old_locus_tag=CFSAN001082_13811
NZ_APAH01000272.1	Protein Homology	CDS	7979	8824	.	+	0	ID=cds-WP_000572196.1;Parent=gene-CFSAN001082_RS37485;Dbxref=GenBank:WP_000572196.1;Name=WP_000572196.1;Ontology_term=GO:0015794,GO:0005886,GO:0055052;gbkey=CDS;gene=ugpE;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_process=glycerol-3-phosphate transmembrane transport|0015794||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000572177.1;locus_tag=CFSAN001082_RS37485;product=sn-glycerol-3-phosphate ABC transporter permease UgpE;protein_id=WP_000572196.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	8827	9897	.	+	.	ID=gene-CFSAN001082_RS37490;Name=CFSAN001082_RS37490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37490;old_locus_tag=CFSAN001082_13816
NZ_APAH01000272.1	Protein Homology	CDS	8827	9897	.	+	0	ID=cds-WP_000907842.1;Parent=gene-CFSAN001082_RS37490;Dbxref=GenBank:WP_000907842.1;Name=WP_000907842.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462455.1;locus_tag=CFSAN001082_RS37490;product=sn-glycerol-3-phosphate import ATP-binding protein UgpC;protein_id=WP_000907842.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	9894	10634	.	+	.	ID=gene-CFSAN001082_RS37495;Name=ugpQ;gbkey=Gene;gene=ugpQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37495;old_locus_tag=CFSAN001082_13821
NZ_APAH01000272.1	Protein Homology	CDS	9894	10634	.	+	0	ID=cds-WP_000073548.1;Parent=gene-CFSAN001082_RS37495;Dbxref=GenBank:WP_000073548.1;Name=WP_000073548.1;Ontology_term=GO:0006629,GO:0008081;gbkey=CDS;gene=ugpQ;go_function=phosphoric diester hydrolase activity|0008081||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462454.1;locus_tag=CFSAN001082_RS37495;product=glycerophosphodiester phosphodiesterase;protein_id=WP_000073548.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	10647	11063	.	-	.	ID=gene-CFSAN001082_RS37500;Name=CFSAN001082_RS37500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37500;old_locus_tag=CFSAN001082_13826
NZ_APAH01000272.1	Protein Homology	CDS	10647	11063	.	-	0	ID=cds-WP_000826035.1;Parent=gene-CFSAN001082_RS37500;Dbxref=GenBank:WP_000826035.1;Name=WP_000826035.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462453.1;locus_tag=CFSAN001082_RS37500;product=DUF2756 family protein;protein_id=WP_000826035.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	11189	12931	.	+	.	ID=gene-CFSAN001082_RS37505;Name=ggt;gbkey=Gene;gene=ggt;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37505;old_locus_tag=CFSAN001082_13831
NZ_APAH01000272.1	Protein Homology	CDS	11189	12931	.	+	0	ID=cds-WP_023254469.1;Parent=gene-CFSAN001082_RS37505;Dbxref=GenBank:WP_023254469.1;Name=WP_023254469.1;Ontology_term=GO:0006751,GO:0036374;gbkey=CDS;gene=ggt;go_function=glutathione hydrolase activity|0036374||IEA;go_process=glutathione catabolic process|0006751||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462452.1;locus_tag=CFSAN001082_RS37505;product=gamma-glutamyltransferase;protein_id=WP_023254469.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	12976	14010	.	-	.	ID=gene-CFSAN001082_RS37510;Name=CFSAN001082_RS37510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37510;old_locus_tag=CFSAN001082_13836
NZ_APAH01000272.1	Protein Homology	CDS	12976	14010	.	-	0	ID=cds-WP_000675705.1;Parent=gene-CFSAN001082_RS37510;Dbxref=GenBank:WP_000675705.1;Name=WP_000675705.1;Ontology_term=GO:0008270,GO:0016787;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462451.1;locus_tag=CFSAN001082_RS37510;product=phosphotriesterase family protein;protein_id=WP_000675705.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	14007	14978	.	-	.	ID=gene-CFSAN001082_RS37515;Name=CFSAN001082_RS37515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37515;old_locus_tag=CFSAN001082_13841
NZ_APAH01000272.1	Protein Homology	CDS	14007	14978	.	-	0	ID=cds-WP_023254470.1;Parent=gene-CFSAN001082_RS37515;Dbxref=GenBank:WP_023254470.1;Name=WP_023254470.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462450.1;locus_tag=CFSAN001082_RS37515;product=DMT family transporter;protein_id=WP_023254470.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	15032	15793	.	-	.	ID=gene-CFSAN001082_RS37520;Name=CFSAN001082_RS37520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37520;old_locus_tag=CFSAN001082_13846
NZ_APAH01000272.1	Protein Homology	CDS	15032	15793	.	-	0	ID=cds-WP_001541040.1;Parent=gene-CFSAN001082_RS37520;Dbxref=GenBank:WP_001541040.1;Name=WP_001541040.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462449.1;locus_tag=CFSAN001082_RS37520;product=glutamine amidotransferase;protein_id=WP_001541040.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	15809	17023	.	-	.	ID=gene-CFSAN001082_RS37525;Name=CFSAN001082_RS37525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37525;old_locus_tag=CFSAN001082_13851
NZ_APAH01000272.1	Protein Homology	CDS	15809	17023	.	-	0	ID=cds-WP_023254471.1;Parent=gene-CFSAN001082_RS37525;Dbxref=GenBank:WP_023254471.1;Name=WP_023254471.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462448.3;locus_tag=CFSAN001082_RS37525;product=PfkB family carbohydrate kinase;protein_id=WP_023254471.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	17288	17776	.	-	.	ID=gene-CFSAN001082_RS37530;Name=yhhY;gbkey=Gene;gene=yhhY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37530;old_locus_tag=CFSAN001082_13861
NZ_APAH01000272.1	Protein Homology	CDS	17288	17776	.	-	0	ID=cds-WP_001290279.1;Parent=gene-CFSAN001082_RS37530;Dbxref=GenBank:WP_001290279.1;Name=WP_001290279.1;Ontology_term=GO:0008080;gbkey=CDS;gene=yhhY;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462447.1;locus_tag=CFSAN001082_RS37530;product=N-acetyltransferase;protein_id=WP_001290279.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	18236	19273	.	+	.	ID=gene-CFSAN001082_RS37535;Name=CFSAN001082_RS37535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37535;old_locus_tag=CFSAN001082_13866
NZ_APAH01000272.1	Protein Homology	CDS	18236	19273	.	+	0	ID=cds-WP_023254472.1;Parent=gene-CFSAN001082_RS37535;Dbxref=GenBank:WP_023254472.1;Name=WP_023254472.1;Ontology_term=GO:0000166;gbkey=CDS;go_function=nucleotide binding|0000166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462446.1;locus_tag=CFSAN001082_RS37535;product=oxidoreductase;protein_id=WP_023254472.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	19397	20092	.	+	.	ID=gene-CFSAN001082_RS37540;Name=CFSAN001082_RS37540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37540;old_locus_tag=CFSAN001082_13871
NZ_APAH01000272.1	Protein Homology	CDS	19397	20092	.	+	0	ID=cds-WP_000639789.1;Parent=gene-CFSAN001082_RS37540;Dbxref=GenBank:WP_000639789.1;Name=WP_000639789.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004213399.1;locus_tag=CFSAN001082_RS37540;product=pirin family protein;protein_id=WP_000639789.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	20222	21217	.	+	.	ID=gene-CFSAN001082_RS37545;Name=gntR;gbkey=Gene;gene=gntR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37545;old_locus_tag=CFSAN001082_13876
NZ_APAH01000272.1	Protein Homology	CDS	20222	21217	.	+	0	ID=cds-WP_000730239.1;Parent=gene-CFSAN001082_RS37545;Dbxref=GenBank:WP_000730239.1;Name=WP_000730239.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=gntR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001693277.1;locus_tag=CFSAN001082_RS37545;product=gluconate operon transcriptional repressor GntR;protein_id=WP_000730239.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	21356	21889	.	+	.	ID=gene-CFSAN001082_RS37550;Name=gntK;gbkey=Gene;gene=gntK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37550;old_locus_tag=CFSAN001082_13881
NZ_APAH01000272.1	Protein Homology	CDS	21356	21889	.	+	0	ID=cds-WP_000108340.1;Parent=gene-CFSAN001082_RS37550;Dbxref=GenBank:WP_000108340.1;Name=WP_000108340.1;gbkey=CDS;gene=gntK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462443.1;locus_tag=CFSAN001082_RS37550;product=gluconokinase;protein_id=WP_000108340.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	21886	23226	.	+	.	ID=gene-CFSAN001082_RS37555;Name=gntU;gbkey=Gene;gene=gntU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37555;old_locus_tag=CFSAN001082_13886
NZ_APAH01000272.1	Protein Homology	CDS	21886	23226	.	+	0	ID=cds-WP_023254473.1;Parent=gene-CFSAN001082_RS37555;Dbxref=GenBank:WP_023254473.1;Name=WP_023254473.1;Ontology_term=GO:0035429,GO:0015128,GO:0016020;gbkey=CDS;gene=gntU;go_component=membrane|0016020||IEA;go_function=gluconate transmembrane transporter activity|0015128||IEA;go_process=gluconate transmembrane transport|0035429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462442.1;locus_tag=CFSAN001082_RS37555;product=gluconate transporter;protein_id=WP_023254473.1;transl_table=11
NZ_APAH01000272.1	RefSeq	pseudogene	23341	23415	.	-	.	ID=gene-CFSAN001082_RS49240;Name=CFSAN001082_RS49240;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49240;partial=true;pseudo=true;start_range=.,23341
NZ_APAH01000272.1	Protein Homology	CDS	23341	23415	.	-	0	ID=cds-CFSAN001082_RS49240;Parent=gene-CFSAN001082_RS49240;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312306.1;locus_tag=CFSAN001082_RS49240;partial=true;product=MarC family protein;pseudo=true;start_range=.,23341;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	23650	24756	.	+	.	ID=gene-CFSAN001082_RS37560;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37560;old_locus_tag=CFSAN001082_13891
NZ_APAH01000272.1	Protein Homology	CDS	23650	24756	.	+	0	ID=cds-WP_023254474.1;Parent=gene-CFSAN001082_RS37560;Dbxref=GenBank:WP_023254474.1;Name=WP_023254474.1;Ontology_term=GO:0009086,GO:0009088,GO:0009089,GO:0009097,GO:0004073,GO:0050661;gbkey=CDS;gene=asd;go_function=aspartate-semialdehyde dehydrogenase activity|0004073||IEA,NADP binding|0050661||IEA;go_process=methionine biosynthetic process|0009086||IEA,threonine biosynthetic process|0009088||IEA,lysine biosynthetic process via diaminopimelate|0009089||IEA,isoleucine biosynthetic process|0009097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462440.1;locus_tag=CFSAN001082_RS37560;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_023254474.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	25104	27290	.	+	.	ID=gene-CFSAN001082_RS37565;Name=glgB;gbkey=Gene;gene=glgB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37565;old_locus_tag=CFSAN001082_13896
NZ_APAH01000272.1	Protein Homology	CDS	25104	27290	.	+	0	ID=cds-WP_023254475.1;Parent=gene-CFSAN001082_RS37565;Dbxref=GenBank:WP_023254475.1;Name=WP_023254475.1;Ontology_term=GO:0005978,GO:0003844;gbkey=CDS;gene=glgB;go_function=1%2C4-alpha-glucan branching enzyme activity|0003844||IEA;go_process=glycogen biosynthetic process|0005978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462439.1;locus_tag=CFSAN001082_RS37565;product=1%2C4-alpha-glucan branching enzyme;protein_id=WP_023254475.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	27287	29263	.	+	.	ID=gene-CFSAN001082_RS37570;Name=glgX;gbkey=Gene;gene=glgX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37570;old_locus_tag=CFSAN001082_13901
NZ_APAH01000272.1	Protein Homology	CDS	27287	29263	.	+	0	ID=cds-WP_023254476.1;Parent=gene-CFSAN001082_RS37570;Dbxref=GenBank:WP_023254476.1;Name=WP_023254476.1;Ontology_term=GO:0005980,GO:0004133;gbkey=CDS;gene=glgX;go_function=glycogen debranching enzyme activity|0004133||IEA;go_process=glycogen catabolic process|0005980||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462438.1;locus_tag=CFSAN001082_RS37570;product=glycogen debranching protein GlgX;protein_id=WP_023254476.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	29278	30573	.	+	.	ID=gene-CFSAN001082_RS37575;Name=glgC;gbkey=Gene;gene=glgC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37575;old_locus_tag=CFSAN001082_13906
NZ_APAH01000272.1	Protein Homology	CDS	29278	30573	.	+	0	ID=cds-WP_000253995.1;Parent=gene-CFSAN001082_RS37575;Dbxref=GenBank:WP_000253995.1;Name=WP_000253995.1;Ontology_term=GO:0005978,GO:0008878;gbkey=CDS;gene=glgC;go_function=glucose-1-phosphate adenylyltransferase activity|0008878||IEA;go_process=glycogen biosynthetic process|0005978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462437.1;locus_tag=CFSAN001082_RS37575;product=glucose-1-phosphate adenylyltransferase;protein_id=WP_000253995.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	30573	32006	.	+	.	ID=gene-CFSAN001082_RS37580;Name=glgA;gbkey=Gene;gene=glgA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37580;old_locus_tag=CFSAN001082_13911
NZ_APAH01000272.1	Protein Homology	CDS	30573	32006	.	+	0	ID=cds-WP_001197669.1;Parent=gene-CFSAN001082_RS37580;Dbxref=GenBank:WP_001197669.1;Name=WP_001197669.1;Ontology_term=GO:0004373;gbkey=CDS;gene=glgA;go_function=alpha-1%2C4-glucan glucosyltransferase (UDP-glucose donor) activity|0004373||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462436.1;locus_tag=CFSAN001082_RS37580;product=glycogen synthase GlgA;protein_id=WP_001197669.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	32026	34473	.	+	.	ID=gene-CFSAN001082_RS37585;Name=glgP;gbkey=Gene;gene=glgP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37585;old_locus_tag=CFSAN001082_13916
NZ_APAH01000272.1	Protein Homology	CDS	32026	34473	.	+	0	ID=cds-WP_000993424.1;Parent=gene-CFSAN001082_RS37585;Dbxref=GenBank:WP_000993424.1;Name=WP_000993424.1;Ontology_term=GO:0005975,GO:0008184;gbkey=CDS;gene=glgP;go_function=glycogen phosphorylase activity|0008184||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010436446.1;locus_tag=CFSAN001082_RS37585;product=glycogen phosphorylase;protein_id=WP_000993424.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	34651	35406	.	+	.	ID=gene-CFSAN001082_RS37590;Name=CFSAN001082_RS37590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37590;old_locus_tag=CFSAN001082_13921
NZ_APAH01000272.1	Protein Homology	CDS	34651	35406	.	+	0	ID=cds-WP_000724553.1;Parent=gene-CFSAN001082_RS37590;Dbxref=GenBank:WP_000724553.1;Name=WP_000724553.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462434.1;locus_tag=CFSAN001082_RS37590;product=IclR family transcriptional regulator;protein_id=WP_000724553.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	35450	36355	.	-	.	ID=gene-CFSAN001082_RS37595;Name=CFSAN001082_RS37595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37595;old_locus_tag=CFSAN001082_13926
NZ_APAH01000272.1	Protein Homology	CDS	35450	36355	.	-	0	ID=cds-WP_000192193.1;Parent=gene-CFSAN001082_RS37595;Dbxref=GenBank:WP_000192193.1;Name=WP_000192193.1;Ontology_term=GO:0071704,GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=obsolete organic substance metabolic process|0071704||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462433.1;locus_tag=CFSAN001082_RS37595;product=dihydrodipicolinate synthase family protein;protein_id=WP_000192193.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	36399	38114	.	-	.	ID=gene-CFSAN001082_RS37600;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37600;old_locus_tag=CFSAN001082_13931
NZ_APAH01000272.1	Protein Homology	CDS	36399	38114	.	-	0	ID=cds-WP_000078494.1;Parent=gene-CFSAN001082_RS37600;Dbxref=GenBank:WP_000078494.1;Name=WP_000078494.1;Ontology_term=GO:0009097,GO:0009099,GO:0000287,GO:0004160,GO:0051536;gbkey=CDS;gene=ilvD;go_function=magnesium ion binding|0000287||IEA,dihydroxy-acid dehydratase activity|0004160||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=isoleucine biosynthetic process|0009097||IEA,L-valine biosynthetic process|0009099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462432.1;locus_tag=CFSAN001082_RS37600;product=dihydroxy-acid dehydratase;protein_id=WP_000078494.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	38111	39445	.	-	.	ID=gene-CFSAN001082_RS37605;Name=CFSAN001082_RS37605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37605;old_locus_tag=CFSAN001082_13936
NZ_APAH01000272.1	Protein Homology	CDS	38111	39445	.	-	0	ID=cds-WP_001518078.1;Parent=gene-CFSAN001082_RS37605;Dbxref=GenBank:WP_001518078.1;Name=WP_001518078.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001653833.1;locus_tag=CFSAN001082_RS37605;product=MFS transporter;protein_id=WP_001518078.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	39783	40892	.	+	.	ID=gene-CFSAN001082_RS37610;Name=CFSAN001082_RS37610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37610;old_locus_tag=CFSAN001082_13941
NZ_APAH01000272.1	Protein Homology	CDS	39783	40892	.	+	0	ID=cds-WP_000258845.1;Parent=gene-CFSAN001082_RS37610;Dbxref=GenBank:WP_000258845.1;Name=WP_000258845.1;Ontology_term=GO:0008270,GO:0008888,GO:0030554;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,glycerol dehydrogenase (NAD+) activity|0008888||IEA,adenyl nucleotide binding|0030554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462431.1;locus_tag=CFSAN001082_RS37610;product=glycerol dehydrogenase;protein_id=WP_000258845.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	41050	42546	.	+	.	ID=gene-CFSAN001082_RS37615;Name=CFSAN001082_RS37615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37615;old_locus_tag=CFSAN001082_13946
NZ_APAH01000272.1	Protein Homology	CDS	41050	42546	.	+	0	ID=cds-WP_023254477.1;Parent=gene-CFSAN001082_RS37615;Dbxref=GenBank:WP_023254477.1;Name=WP_023254477.1;Ontology_term=GO:0006817,GO:0022857,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=transmembrane transporter activity|0022857||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000786181.1;locus_tag=CFSAN001082_RS37615;product=PstS family phosphate ABC transporter substrate-binding protein;protein_id=WP_023254477.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	42556	43101	.	+	.	ID=gene-CFSAN001082_RS37620;Name=CFSAN001082_RS37620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37620;old_locus_tag=CFSAN001082_13951
NZ_APAH01000272.1	Protein Homology	CDS	42556	43101	.	+	0	ID=cds-WP_023254478.1;Parent=gene-CFSAN001082_RS37620;Dbxref=GenBank:WP_023254478.1;Name=WP_023254478.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462429.1;locus_tag=CFSAN001082_RS37620;product=hypothetical protein;protein_id=WP_023254478.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	43149	44657	.	-	.	ID=gene-CFSAN001082_RS37625;Name=glpD;gbkey=Gene;gene=glpD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37625;old_locus_tag=CFSAN001082_13956
NZ_APAH01000272.1	Protein Homology	CDS	43149	44657	.	-	0	ID=cds-WP_000448178.1;Parent=gene-CFSAN001082_RS37625;Dbxref=GenBank:WP_000448178.1;Name=WP_000448178.1;Ontology_term=GO:0006072,GO:0004368,GO:0009331;gbkey=CDS;gene=glpD;go_component=glycerol-3-phosphate dehydrogenase (FAD) complex|0009331||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462428.1;locus_tag=CFSAN001082_RS37625;product=glycerol-3-phosphate dehydrogenase;protein_id=WP_000448178.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	44856	45182	.	+	.	ID=gene-CFSAN001082_RS37630;Name=glpE;gbkey=Gene;gene=glpE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37630;old_locus_tag=CFSAN001082_13961
NZ_APAH01000272.1	Protein Homology	CDS	44856	45182	.	+	0	ID=cds-WP_020899329.1;Parent=gene-CFSAN001082_RS37630;Dbxref=GenBank:WP_020899329.1;Name=WP_020899329.1;Ontology_term=GO:0004792;gbkey=CDS;gene=glpE;go_function=thiosulfate-cyanide sulfurtransferase activity|0004792||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462427.1;locus_tag=CFSAN001082_RS37630;product=thiosulfate sulfurtransferase GlpE;protein_id=WP_020899329.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	45258	46088	.	+	.	ID=gene-CFSAN001082_RS37635;Name=glpG;gbkey=Gene;gene=glpG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37635;old_locus_tag=CFSAN001082_13966
NZ_APAH01000272.1	Protein Homology	CDS	45258	46088	.	+	0	ID=cds-WP_000928702.1;Parent=gene-CFSAN001082_RS37635;Dbxref=GenBank:WP_000928702.1;Name=WP_000928702.1;Ontology_term=GO:0006508,GO:0004252,GO:0016020;gbkey=CDS;gene=glpG;go_component=membrane|0016020||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462426.1;locus_tag=CFSAN001082_RS37635;product=rhomboid family intramembrane serine protease GlpG;protein_id=WP_000928702.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	46182	46940	.	+	.	ID=gene-CFSAN001082_RS37640;Name=CFSAN001082_RS37640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37640;old_locus_tag=CFSAN001082_13971
NZ_APAH01000272.1	Protein Homology	CDS	46182	46940	.	+	0	ID=cds-WP_000815085.1;Parent=gene-CFSAN001082_RS37640;Dbxref=GenBank:WP_000815085.1;Name=WP_000815085.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000815090.1;locus_tag=CFSAN001082_RS37640;product=DeoR/GlpR family transcriptional regulator;protein_id=WP_000815085.1;transl_table=11
NZ_APAH01000272.1	RefSeq	gene	46937	48520	.	-	.	ID=gene-CFSAN001082_RS37645;Name=rtcR;gbkey=Gene;gene=rtcR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37645;old_locus_tag=CFSAN001082_13976
NZ_APAH01000272.1	Protein Homology	CDS	46937	48520	.	-	0	ID=cds-WP_001232871.1;Parent=gene-CFSAN001082_RS37645;Dbxref=GenBank:WP_001232871.1;Name=WP_001232871.1;Ontology_term=GO:0006355,GO:0003700,GO:0005524,GO:0008134;gbkey=CDS;gene=rtcR;go_function=DNA-binding transcription factor activity|0003700||IEA,ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462424.1;locus_tag=CFSAN001082_RS37645;product=RNA repair transcriptional activator RtcR;protein_id=WP_001232871.1;transl_table=11
##sequence-region NZ_APAH01000273.1 1 7340
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000273.1	RefSeq	region	1	7340	.	+	.	ID=NZ_APAH01000273.1:1..7340;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000273.1	RefSeq	gene	256	720	.	+	.	ID=gene-CFSAN001082_RS37650;Name=CFSAN001082_RS37650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37650;old_locus_tag=CFSAN001082_13981
NZ_APAH01000273.1	Protein Homology	CDS	256	720	.	+	0	ID=cds-WP_000381834.1;Parent=gene-CFSAN001082_RS37650;Dbxref=GenBank:WP_000381834.1;Name=WP_000381834.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002211098.1;locus_tag=CFSAN001082_RS37650;product=STM2901 family protein;protein_id=WP_000381834.1;transl_table=11
NZ_APAH01000273.1	RefSeq	gene	714	1040	.	+	.	ID=gene-CFSAN001082_RS37655;Name=CFSAN001082_RS37655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37655;old_locus_tag=CFSAN001082_13986
NZ_APAH01000273.1	Protein Homology	CDS	714	1040	.	+	0	ID=cds-WP_000228159.1;Parent=gene-CFSAN001082_RS37655;Dbxref=GenBank:WP_000228159.1;Name=WP_000228159.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460958.1;locus_tag=CFSAN001082_RS37655;product=DUF1493 family protein;protein_id=WP_000228159.1;transl_table=11
NZ_APAH01000273.1	RefSeq	pseudogene	1029	1189	.	-	.	ID=gene-CFSAN001082_RS37660;Name=CFSAN001082_RS37660;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS37660;old_locus_tag=CFSAN001082_13991;pseudo=true
NZ_APAH01000273.1	Protein Homology	CDS	1029	1189	.	-	0	ID=cds-CFSAN001082_RS37660;Parent=gene-CFSAN001082_RS37660;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448416.1;locus_tag=CFSAN001082_RS37660;product=cytoplasmic protein;pseudo=true;transl_table=11
NZ_APAH01000273.1	RefSeq	gene	1235	2689	.	+	.	ID=gene-CFSAN001082_RS37665;Name=CFSAN001082_RS37665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37665;old_locus_tag=CFSAN001082_13996
NZ_APAH01000273.1	Protein Homology	CDS	1235	2689	.	+	0	ID=cds-WP_023205648.1;Parent=gene-CFSAN001082_RS37665;Dbxref=GenBank:WP_023205648.1;Name=WP_023205648.1;Ontology_term=GO:0009116,GO:0044209,GO:0008714;gbkey=CDS;go_function=AMP nucleosidase activity|0008714||IEA;go_process=nucleoside metabolic process|0009116||IEA,AMP salvage|0044209||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460956.1;locus_tag=CFSAN001082_RS37665;product=AMP nucleosidase;protein_id=WP_023205648.1;transl_table=11
NZ_APAH01000273.1	RefSeq	gene	3196	3369	.	-	.	ID=gene-CFSAN001082_RS48560;Name=CFSAN001082_RS48560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48560;old_locus_tag=CFSAN001082_14006
NZ_APAH01000273.1	Protein Homology	CDS	3196	3369	.	-	0	ID=cds-WP_000957535.1;Parent=gene-CFSAN001082_RS48560;Dbxref=GenBank:WP_000957535.1;Name=WP_000957535.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000957538.1;locus_tag=CFSAN001082_RS48560;product=hypothetical protein;protein_id=WP_000957535.1;transl_table=11
NZ_APAH01000273.1	RefSeq	pseudogene	3417	3521	.	+	.	ID=gene-CFSAN001082_RS47200;Name=CFSAN001082_RS47200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47200;old_locus_tag=CFSAN001082_14011;partial=true;pseudo=true;start_range=.,3417
NZ_APAH01000273.1	Protein Homology	CDS	3417	3521	.	+	0	ID=cds-CFSAN001082_RS47200;Parent=gene-CFSAN001082_RS47200;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965590.1;locus_tag=CFSAN001082_RS47200;partial=true;product=DUF520 family protein;pseudo=true;start_range=.,3417;transl_table=11
NZ_APAH01000273.1	RefSeq	gene	3579	5309	.	-	.	ID=gene-CFSAN001082_RS37675;Name=CFSAN001082_RS37675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37675;old_locus_tag=CFSAN001082_14016
NZ_APAH01000273.1	Protein Homology	CDS	3579	5309	.	-	0	ID=cds-WP_023254479.1;Parent=gene-CFSAN001082_RS37675;Dbxref=GenBank:WP_023254479.1;Name=WP_023254479.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460955.1;locus_tag=CFSAN001082_RS37675;product=hypothetical protein;protein_id=WP_023254479.1;transl_table=11
NZ_APAH01000273.1	RefSeq	gene	5366	7060	.	-	.	ID=gene-CFSAN001082_RS37680;Name=CFSAN001082_RS37680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37680;old_locus_tag=CFSAN001082_14021
NZ_APAH01000273.1	Protein Homology	CDS	5366	7060	.	-	0	ID=cds-WP_077911163.1;Parent=gene-CFSAN001082_RS37680;Dbxref=GenBank:WP_077911163.1;Name=WP_077911163.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460954.1;locus_tag=CFSAN001082_RS37680;product=SEL1-like repeat protein;protein_id=WP_077911163.1;transl_table=11
##sequence-region NZ_APAH01000274.1 1 6497
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000274.1	RefSeq	region	1	6497	.	+	.	ID=NZ_APAH01000274.1:1..6497;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000274.1	RefSeq	gene	122	652	.	-	.	ID=gene-CFSAN001082_RS37685;Name=ppa;gbkey=Gene;gene=ppa;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37685;old_locus_tag=CFSAN001082_14026
NZ_APAH01000274.1	Protein Homology	CDS	122	652	.	-	0	ID=cds-WP_000055079.1;Parent=gene-CFSAN001082_RS37685;Dbxref=GenBank:WP_000055079.1;Name=WP_000055079.1;Ontology_term=GO:0006796,GO:0004427;gbkey=CDS;gene=ppa;go_function=inorganic diphosphate phosphatase activity|0004427||IEA;go_process=phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001739810.1;locus_tag=CFSAN001082_RS37685;product=inorganic diphosphatase;protein_id=WP_000055079.1;transl_table=11
NZ_APAH01000274.1	RefSeq	gene	879	1877	.	-	.	ID=gene-CFSAN001082_RS37690;Name=fbp;gbkey=Gene;gene=fbp;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37690;old_locus_tag=CFSAN001082_14031
NZ_APAH01000274.1	Protein Homology	CDS	879	1877	.	-	0	ID=cds-WP_000853764.1;Parent=gene-CFSAN001082_RS37690;Dbxref=GenBank:WP_000853764.1;Name=WP_000853764.1;Ontology_term=GO:0005975,GO:0042132;gbkey=CDS;gene=fbp;go_function=fructose 1%2C6-bisphosphate 1-phosphatase activity|0042132||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016233757.1;locus_tag=CFSAN001082_RS37690;product=class 1 fructose-bisphosphatase;protein_id=WP_000853764.1;transl_table=11
NZ_APAH01000274.1	RefSeq	gene	2052	3431	.	+	.	ID=gene-CFSAN001082_RS37695;Name=mpl;gbkey=Gene;gene=mpl;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37695;old_locus_tag=CFSAN001082_14036
NZ_APAH01000274.1	Protein Homology	CDS	2052	3431	.	+	0	ID=cds-WP_001219833.1;Parent=gene-CFSAN001082_RS37695;Dbxref=GenBank:WP_001219833.1;Name=WP_001219833.1;Ontology_term=GO:0009252,GO:0071555,GO:0016881;gbkey=CDS;gene=mpl;go_function=acid-amino acid ligase activity|0016881||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463277.1;locus_tag=CFSAN001082_RS37695;product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase;protein_id=WP_001219833.1;transl_table=11
NZ_APAH01000274.1	RefSeq	gene	3922	4755	.	+	.	ID=gene-CFSAN001082_RS37705;Name=iolR;gbkey=Gene;gene=iolR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37705;old_locus_tag=CFSAN001082_14046
NZ_APAH01000274.1	Protein Homology	CDS	3922	4755	.	+	0	ID=cds-WP_000033840.1;Parent=gene-CFSAN001082_RS37705;Dbxref=GenBank:WP_000033840.1;Name=WP_000033840.1;gbkey=CDS;gene=iolR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463278.1;locus_tag=CFSAN001082_RS37705;product=myo-inositol utilization transcriptional regulator IolR;protein_id=WP_000033840.1;transl_table=11
NZ_APAH01000274.1	RefSeq	gene	4806	6239	.	-	.	ID=gene-CFSAN001082_RS37710;Name=iolT1;gbkey=Gene;gene=iolT1;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37710;old_locus_tag=CFSAN001082_14051
NZ_APAH01000274.1	Protein Homology	CDS	4806	6239	.	-	0	ID=cds-WP_000107709.1;Parent=gene-CFSAN001082_RS37710;Dbxref=GenBank:WP_000107709.1;Name=WP_000107709.1;gbkey=CDS;gene=iolT1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463279.1;locus_tag=CFSAN001082_RS37710;product=myo-inositol import MFS transporter IolT1;protein_id=WP_000107709.1;transl_table=11
##sequence-region NZ_APAH01000275.1 1 3987
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000275.1	RefSeq	region	1	3987	.	+	.	ID=NZ_APAH01000275.1:1..3987;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000275.1	RefSeq	gene	213	683	.	-	.	ID=gene-CFSAN001082_RS37715;Name=afaD;gbkey=Gene;gene=afaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37715;old_locus_tag=CFSAN001082_14056
NZ_APAH01000275.1	Protein Homology	CDS	213	683	.	-	0	ID=cds-WP_023254481.1;Parent=gene-CFSAN001082_RS37715;Dbxref=GenBank:WP_023254481.1;Name=WP_023254481.1;gbkey=CDS;gene=afaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459300.1;locus_tag=CFSAN001082_RS37715;product=AfaD family invasin;protein_id=WP_023254481.1;transl_table=11
NZ_APAH01000275.1	RefSeq	gene	705	3215	.	-	.	ID=gene-CFSAN001082_RS37720;Name=CFSAN001082_RS37720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37720;old_locus_tag=CFSAN001082_14061
NZ_APAH01000275.1	Protein Homology	CDS	705	3215	.	-	0	ID=cds-WP_023254482.1;Parent=gene-CFSAN001082_RS37720;Dbxref=GenBank:WP_023254482.1;Name=WP_023254482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459299.1;locus_tag=CFSAN001082_RS37720;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_023254482.1;transl_table=11
NZ_APAH01000275.1	RefSeq	gene	3239	3955	.	-	.	ID=gene-CFSAN001082_RS37725;Name=safB;gbkey=Gene;gene=safB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37725;old_locus_tag=CFSAN001082_14066
NZ_APAH01000275.1	Protein Homology	CDS	3239	3955	.	-	0	ID=cds-WP_424815898.1;Parent=gene-CFSAN001082_RS37725;Dbxref=GenBank:WP_424815898.1;Name=WP_424815898.1;gbkey=CDS;gene=safB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000257370.1;locus_tag=CFSAN001082_RS37725;product=pili assembly chaperone SafB;protein_id=WP_424815898.1;transl_table=11
##sequence-region NZ_APAH01000276.1 1 12281
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000276.1	RefSeq	region	1	12281	.	+	.	ID=NZ_APAH01000276.1:1..12281;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000276.1	RefSeq	gene	17	1033	.	-	.	ID=gene-CFSAN001082_RS37730;Name=lplA;gbkey=Gene;gene=lplA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37730;old_locus_tag=CFSAN001082_14071
NZ_APAH01000276.1	Protein Homology	CDS	17	1033	.	-	0	ID=cds-WP_023254484.1;Parent=gene-CFSAN001082_RS37730;Dbxref=GenBank:WP_023254484.1;Name=WP_023254484.1;gbkey=CDS;gene=lplA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463432.1;locus_tag=CFSAN001082_RS37730;product=lipoate--protein ligase LplA;protein_id=WP_023254484.1;transl_table=11
NZ_APAH01000276.1	RefSeq	gene	1067	1711	.	-	.	ID=gene-CFSAN001082_RS37735;Name=CFSAN001082_RS37735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37735;old_locus_tag=CFSAN001082_14076
NZ_APAH01000276.1	Protein Homology	CDS	1067	1711	.	-	0	ID=cds-WP_000090067.1;Parent=gene-CFSAN001082_RS37735;Dbxref=GenBank:WP_000090067.1;Name=WP_000090067.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463433.2;locus_tag=CFSAN001082_RS37735;product=YtjB family periplasmic protein;protein_id=WP_000090067.1;transl_table=11
NZ_APAH01000276.1	RefSeq	gene	1828	2796	.	+	.	ID=gene-CFSAN001082_RS37740;Name=serB;gbkey=Gene;gene=serB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37740;old_locus_tag=CFSAN001082_14081
NZ_APAH01000276.1	Protein Homology	CDS	1828	2796	.	+	0	ID=cds-WP_001132983.1;Parent=gene-CFSAN001082_RS37740;Dbxref=GenBank:WP_001132983.1;Name=WP_001132983.1;Ontology_term=GO:0006564,GO:0036424;gbkey=CDS;gene=serB;go_function=L-phosphoserine phosphatase activity|0036424||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463434.1;locus_tag=CFSAN001082_RS37740;product=phosphoserine phosphatase;protein_id=WP_001132983.1;transl_table=11
NZ_APAH01000276.1	RefSeq	gene	2880	4262	.	+	.	ID=gene-CFSAN001082_RS37745;Name=radA;gbkey=Gene;gene=radA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37745;old_locus_tag=CFSAN001082_14086
NZ_APAH01000276.1	Protein Homology	CDS	2880	4262	.	+	0	ID=cds-WP_001029710.1;Parent=gene-CFSAN001082_RS37745;Dbxref=GenBank:WP_001029710.1;Name=WP_001029710.1;Ontology_term=GO:0006281,GO:0003684,GO:0005524;gbkey=CDS;gene=radA;go_function=damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001399683.1;locus_tag=CFSAN001082_RS37745;product=DNA repair protein RadA;protein_id=WP_001029710.1;transl_table=11
NZ_APAH01000276.1	RefSeq	gene	4403	5635	.	+	.	ID=gene-CFSAN001082_RS37750;Name=nadR;gbkey=Gene;gene=nadR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37750;old_locus_tag=CFSAN001082_14091
NZ_APAH01000276.1	Protein Homology	CDS	4403	5635	.	+	0	ID=cds-WP_001532645.1;Parent=gene-CFSAN001082_RS37750;Dbxref=GenBank:WP_001532645.1;Name=WP_001532645.1;Ontology_term=GO:0009058,GO:0000309,GO:0003677,GO:0050262;gbkey=CDS;gene=nadR;go_function=nicotinamide-nucleotide adenylyltransferase activity|0000309||IEA,DNA binding|0003677||IEA,ribosylnicotinamide kinase activity|0050262||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463436.5;locus_tag=CFSAN001082_RS37750;product=multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR;protein_id=WP_001532645.1;transl_table=11
NZ_APAH01000276.1	RefSeq	gene	5753	7420	.	-	.	ID=gene-CFSAN001082_RS37755;Name=ettA;gbkey=Gene;gene=ettA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37755;old_locus_tag=CFSAN001082_14096
NZ_APAH01000276.1	Protein Homology	CDS	5753	7420	.	-	0	ID=cds-WP_000046770.1;Parent=gene-CFSAN001082_RS37755;Dbxref=GenBank:WP_000046770.1;Name=WP_000046770.1;Ontology_term=GO:0045900,GO:0005524;gbkey=CDS;gene=ettA;go_function=ATP binding|0005524||IEA;go_process=negative regulation of translational elongation|0045900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017145039.1;locus_tag=CFSAN001082_RS37755;product=energy-dependent translational throttle protein EttA;protein_id=WP_000046770.1;transl_table=11
NZ_APAH01000276.1	RefSeq	gene	7596	9566	.	+	.	ID=gene-CFSAN001082_RS37760;Name=sltY;gbkey=Gene;gene=sltY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37760;old_locus_tag=CFSAN001082_14101
NZ_APAH01000276.1	Protein Homology	CDS	7596	9566	.	+	0	ID=cds-WP_155580949.1;Parent=gene-CFSAN001082_RS37760;Dbxref=GenBank:WP_155580949.1;Name=WP_155580949.1;Ontology_term=GO:0000270,GO:0004553,GO:0008933,GO:0016020,GO:0042597;gbkey=CDS;gene=sltY;go_component=membrane|0016020||IEA,periplasmic space|0042597||IEA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA,peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016155637.1;locus_tag=CFSAN001082_RS37760;product=murein transglycosylase;protein_id=WP_155580949.1;transl_table=11
NZ_APAH01000276.1	RefSeq	gene	9624	9950	.	+	.	ID=gene-CFSAN001082_RS37765;Name=trpR;gbkey=Gene;gene=trpR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37765;old_locus_tag=CFSAN001082_14106
NZ_APAH01000276.1	Protein Homology	CDS	9624	9950	.	+	0	ID=cds-WP_023254485.1;Parent=gene-CFSAN001082_RS37765;Dbxref=GenBank:WP_023254485.1;Name=WP_023254485.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=trpR;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463439.1;locus_tag=CFSAN001082_RS37765;product=trp operon repressor;protein_id=WP_023254485.1;transl_table=11
NZ_APAH01000276.1	RefSeq	gene	10051	10566	.	-	.	ID=gene-CFSAN001082_RS37770;Name=yjjX;gbkey=Gene;gene=yjjX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37770;old_locus_tag=CFSAN001082_14111
NZ_APAH01000276.1	Protein Homology	CDS	10051	10566	.	-	0	ID=cds-WP_023254486.1;Parent=gene-CFSAN001082_RS37770;Dbxref=GenBank:WP_023254486.1;Name=WP_023254486.1;gbkey=CDS;gene=yjjX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463440.1;locus_tag=CFSAN001082_RS37770;product=inosine/xanthosine triphosphatase;protein_id=WP_023254486.1;transl_table=11
NZ_APAH01000276.1	RefSeq	gene	10615	11262	.	+	.	ID=gene-CFSAN001082_RS37775;Name=gpmB;gbkey=Gene;gene=gpmB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37775;old_locus_tag=CFSAN001082_14116
NZ_APAH01000276.1	Protein Homology	CDS	10615	11262	.	+	0	ID=cds-WP_000942363.1;Parent=gene-CFSAN001082_RS37775;Dbxref=GenBank:WP_000942363.1;Name=WP_000942363.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmB;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463441.1;locus_tag=CFSAN001082_RS37775;product=2%2C3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB;protein_id=WP_000942363.1;transl_table=11
NZ_APAH01000276.1	RefSeq	gene	11259	12128	.	-	.	ID=gene-CFSAN001082_RS37780;Name=robA;gbkey=Gene;gene=robA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37780;old_locus_tag=CFSAN001082_14121
NZ_APAH01000276.1	Protein Homology	CDS	11259	12128	.	-	0	ID=cds-WP_000371685.1;Parent=gene-CFSAN001082_RS37780;Dbxref=GenBank:WP_000371685.1;Name=WP_000371685.1;gbkey=CDS;gene=robA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463442.1;locus_tag=CFSAN001082_RS37780;product=MDR efflux pump AcrAB transcriptional activator RobA;protein_id=WP_000371685.1;transl_table=11
##sequence-region NZ_APAH01000277.1 1 22203
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000277.1	RefSeq	region	1	22203	.	+	.	ID=NZ_APAH01000277.1:1..22203;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000277.1	RefSeq	gene	29	1225	.	+	.	ID=gene-CFSAN001082_RS37785;Name=CFSAN001082_RS37785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37785;old_locus_tag=CFSAN001082_14126
NZ_APAH01000277.1	Protein Homology	CDS	29	1225	.	+	0	ID=cds-WP_001276365.1;Parent=gene-CFSAN001082_RS37785;Dbxref=GenBank:WP_001276365.1;Name=WP_001276365.1;Ontology_term=GO:0015129;gbkey=CDS;go_function=lactate transmembrane transporter activity|0015129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461509.1;locus_tag=CFSAN001082_RS37785;product=L-lactate MFS transporter;protein_id=WP_001276365.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	1247	2164	.	+	.	ID=gene-CFSAN001082_RS37790;Name=CFSAN001082_RS37790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37790;old_locus_tag=CFSAN001082_14131
NZ_APAH01000277.1	Protein Homology	CDS	1247	2164	.	+	0	ID=cds-WP_001607052.1;Parent=gene-CFSAN001082_RS37790;Dbxref=GenBank:WP_001607052.1;Name=WP_001607052.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461508.1;locus_tag=CFSAN001082_RS37790;product=oxidoreductase;protein_id=WP_001607052.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	2203	3051	.	-	.	ID=gene-CFSAN001082_RS37795;Name=CFSAN001082_RS37795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37795;old_locus_tag=CFSAN001082_14136
NZ_APAH01000277.1	Protein Homology	CDS	2203	3051	.	-	0	ID=cds-WP_023209427.1;Parent=gene-CFSAN001082_RS37795;Dbxref=GenBank:WP_023209427.1;Name=WP_023209427.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461507.1;locus_tag=CFSAN001082_RS37795;product=MurR/RpiR family transcriptional regulator;protein_id=WP_023209427.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	3167	4060	.	+	.	ID=gene-CFSAN001082_RS37800;Name=murQ;gbkey=Gene;gene=murQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37800;old_locus_tag=CFSAN001082_14141
NZ_APAH01000277.1	Protein Homology	CDS	3167	4060	.	+	0	ID=cds-WP_001048531.1;Parent=gene-CFSAN001082_RS37800;Dbxref=GenBank:WP_001048531.1;Name=WP_001048531.1;Ontology_term=GO:0009254,GO:0046348,GO:0016835;gbkey=CDS;gene=murQ;go_function=carbon-oxygen lyase activity|0016835||IEA;go_process=peptidoglycan turnover|0009254||IEA,amino sugar catabolic process|0046348||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461506.1;locus_tag=CFSAN001082_RS37800;product=N-acetylmuramic acid 6-phosphate etherase;protein_id=WP_001048531.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	4071	5432	.	+	.	ID=gene-CFSAN001082_RS37805;Name=CFSAN001082_RS37805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37805;old_locus_tag=CFSAN001082_14146
NZ_APAH01000277.1	Protein Homology	CDS	4071	5432	.	+	0	ID=cds-WP_000361660.1;Parent=gene-CFSAN001082_RS37805;Dbxref=GenBank:WP_000361660.1;Name=WP_000361660.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461505.1;locus_tag=CFSAN001082_RS37805;product=PTS transporter subunit EIIC;protein_id=WP_000361660.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	5436	6071	.	+	.	ID=gene-CFSAN001082_RS37810;Name=yfhb;gbkey=Gene;gene=yfhb;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37810;old_locus_tag=CFSAN001082_14151
NZ_APAH01000277.1	Protein Homology	CDS	5436	6071	.	+	0	ID=cds-WP_000253558.1;Parent=gene-CFSAN001082_RS37810;Dbxref=GenBank:WP_000253558.1;Name=WP_000253558.1;Ontology_term=GO:0016787;gbkey=CDS;gene=yfhb;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461504.1;locus_tag=CFSAN001082_RS37810;product=phosphatidylglycerophosphatase C;protein_id=WP_000253558.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	6096	6647	.	+	.	ID=gene-CFSAN001082_RS37815;Name=tadA;gbkey=Gene;gene=tadA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37815;old_locus_tag=CFSAN001082_14156
NZ_APAH01000277.1	Protein Homology	CDS	6096	6647	.	+	0	ID=cds-WP_001134563.1;Parent=gene-CFSAN001082_RS37815;Dbxref=GenBank:WP_001134563.1;Name=WP_001134563.1;Ontology_term=GO:0002100,GO:0008251,GO:0008270;gbkey=CDS;gene=tadA;go_function=tRNA-specific adenosine deaminase activity|0008251||IEA,zinc ion binding|0008270||IEA;go_process=tRNA wobble adenosine to inosine editing|0002100||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461503.1;locus_tag=CFSAN001082_RS37815;product=tRNA adenosine(34) deaminase TadA;protein_id=WP_001134563.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	6698	8242	.	-	.	ID=gene-CFSAN001082_RS37820;Name=mltF;gbkey=Gene;gene=mltF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37820;old_locus_tag=CFSAN001082_14161
NZ_APAH01000277.1	Protein Homology	CDS	6698	8242	.	-	0	ID=cds-WP_023254487.1;Parent=gene-CFSAN001082_RS37820;Dbxref=GenBank:WP_023254487.1;Name=WP_023254487.1;Ontology_term=GO:0000270,GO:0008933,GO:0016020;gbkey=CDS;gene=mltF;go_component=membrane|0016020||IEA;go_function=peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461502.1;locus_tag=CFSAN001082_RS37820;product=membrane-bound lytic murein transglycosylase MltF;protein_id=WP_023254487.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	8243	8473	.	-	.	ID=gene-CFSAN001082_RS0123650;Name=CFSAN001082_RS0123650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123650
NZ_APAH01000277.1	Protein Homology	CDS	8243	8473	.	-	0	ID=cds-WP_001667771.1;Parent=gene-CFSAN001082_RS0123650;Dbxref=GenBank:WP_001667771.1;Name=WP_001667771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001669324.1;locus_tag=CFSAN001082_RS0123650;product=hypothetical protein;protein_id=WP_001667771.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	8498	12385	.	+	.	ID=gene-CFSAN001082_RS37825;Name=purL;gbkey=Gene;gene=purL;gene_biotype=protein_coding;gene_synonym=purI;locus_tag=CFSAN001082_RS37825;old_locus_tag=CFSAN001082_14166
NZ_APAH01000277.1	Protein Homology	CDS	8498	12385	.	+	0	ID=cds-WP_024150304.1;Parent=gene-CFSAN001082_RS37825;Dbxref=GenBank:WP_024150304.1;Name=WP_024150304.1;Ontology_term=GO:0004642;gbkey=CDS;gene=purL;go_function=phosphoribosylformylglycinamidine synthase activity|0004642||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461500.1;locus_tag=CFSAN001082_RS37825;product=phosphoribosylformylglycinamidine synthase;protein_id=WP_024150304.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	13034	14464	.	+	.	ID=gene-CFSAN001082_RS37830;Name=qseE;gbkey=Gene;gene=qseE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37830;old_locus_tag=CFSAN001082_14171
NZ_APAH01000277.1	Protein Homology	CDS	13034	14464	.	+	0	ID=cds-WP_023136414.1;Parent=gene-CFSAN001082_RS37830;Dbxref=GenBank:WP_023136414.1;Name=WP_023136414.1;gbkey=CDS;gene=qseE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001676035.1;locus_tag=CFSAN001082_RS37830;product=two component system sensor histidine kinase QseE/GlrK;protein_id=WP_023136414.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	14466	15230	.	+	.	ID=gene-CFSAN001082_RS37835;Name=qseG;gbkey=Gene;gene=qseG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37835;old_locus_tag=CFSAN001082_14176
NZ_APAH01000277.1	Protein Homology	CDS	14466	15230	.	+	0	ID=cds-WP_076727016.1;Parent=gene-CFSAN001082_RS37835;Dbxref=GenBank:WP_076727016.1;Name=WP_076727016.1;gbkey=CDS;gene=qseG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461498.1;locus_tag=CFSAN001082_RS37835;product=two-component system QseEF-associated lipoprotein QseG;protein_id=WP_076727016.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	15230	16564	.	+	.	ID=gene-CFSAN001082_RS37840;Name=glrR;gbkey=Gene;gene=glrR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37840;old_locus_tag=CFSAN001082_14181
NZ_APAH01000277.1	Protein Homology	CDS	15230	16564	.	+	0	ID=cds-WP_024131115.1;Parent=gene-CFSAN001082_RS37840;Dbxref=GenBank:WP_024131115.1;Name=WP_024131115.1;Ontology_term=GO:0000160,GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;gene=glrR;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311447.1;locus_tag=CFSAN001082_RS37840;product=two-component system response regulator GlrR;protein_id=WP_024131115.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	16641	16979	.	+	.	ID=gene-CFSAN001082_RS37845;Name=glnB;gbkey=Gene;gene=glnB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37845;old_locus_tag=CFSAN001082_14186
NZ_APAH01000277.1	Protein Homology	CDS	16641	16979	.	+	0	ID=cds-WP_000717694.1;Parent=gene-CFSAN001082_RS37845;Dbxref=GenBank:WP_000717694.1;Name=WP_000717694.1;gbkey=CDS;gene=glnB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017373484.1;locus_tag=CFSAN001082_RS37845;product=nitrogen regulatory protein P-II;protein_id=WP_000717694.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	17028	18488	.	-	.	ID=gene-CFSAN001082_RS37850;Name=dtpD;gbkey=Gene;gene=dtpD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37850;old_locus_tag=CFSAN001082_14191
NZ_APAH01000277.1	Protein Homology	CDS	17028	18488	.	-	0	ID=cds-WP_000856793.1;Parent=gene-CFSAN001082_RS37850;Dbxref=GenBank:WP_000856793.1;Name=WP_000856793.1;Ontology_term=GO:0006857,GO:0055085,GO:1904680,GO:0016020;gbkey=CDS;gene=dtpD;go_component=membrane|0016020||IEA;go_function=peptide transmembrane transporter activity|1904680||IEA;go_process=oligopeptide transport|0006857||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461495.1;locus_tag=CFSAN001082_RS37850;product=dipeptide permease DtpD;protein_id=WP_000856793.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	18544	20688	.	-	.	ID=gene-CFSAN001082_RS37855;Name=cadA;gbkey=Gene;gene=cadA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37855;old_locus_tag=CFSAN001082_14196
NZ_APAH01000277.1	Protein Homology	CDS	18544	20688	.	-	0	ID=cds-WP_001100652.1;Parent=gene-CFSAN001082_RS37855;Dbxref=GenBank:WP_001100652.1;Name=WP_001100652.1;gbkey=CDS;gene=cadA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461494.1;locus_tag=CFSAN001082_RS37855;product=lysine decarboxylase CadA;protein_id=WP_001100652.1;transl_table=11
NZ_APAH01000277.1	RefSeq	gene	20771	22102	.	-	.	ID=gene-CFSAN001082_RS37860;Name=cadB;gbkey=Gene;gene=cadB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37860;old_locus_tag=CFSAN001082_14201
NZ_APAH01000277.1	Protein Homology	CDS	20771	22102	.	-	0	ID=cds-WP_000100008.1;Parent=gene-CFSAN001082_RS37860;Dbxref=GenBank:WP_000100008.1;Name=WP_000100008.1;Ontology_term=GO:0043872;gbkey=CDS;gene=cadB;go_function=lysine:cadaverine antiporter activity|0043872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461493.1;locus_tag=CFSAN001082_RS37860;product=cadaverine/lysine antiporter;protein_id=WP_000100008.1;transl_table=11
##sequence-region NZ_APAH01000278.1 1 18915
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000278.1	RefSeq	region	1	18915	.	+	.	ID=NZ_APAH01000278.1:1..18915;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000278.1	RefSeq	gene	151	1104	.	+	.	ID=gene-CFSAN001082_RS37865;Name=CFSAN001082_RS37865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37865;old_locus_tag=CFSAN001082_14206
NZ_APAH01000278.1	Protein Homology	CDS	151	1104	.	+	0	ID=cds-WP_001022089.1;Parent=gene-CFSAN001082_RS37865;Dbxref=GenBank:WP_001022089.1;Name=WP_001022089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459166.1;locus_tag=CFSAN001082_RS37865;product=2-keto-3-deoxygluconate permease 1;protein_id=WP_001022089.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	1101	2372	.	+	.	ID=gene-CFSAN001082_RS37870;Name=dtnK;gbkey=Gene;gene=dtnK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37870;old_locus_tag=CFSAN001082_14211
NZ_APAH01000278.1	Protein Homology	CDS	1101	2372	.	+	0	ID=cds-WP_023254490.1;Parent=gene-CFSAN001082_RS37870;Dbxref=GenBank:WP_023254490.1;Name=WP_023254490.1;Ontology_term=GO:0005524,GO:0016301;gbkey=CDS;gene=dtnK;go_function=ATP binding|0005524||IEA,kinase activity|0016301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459167.1;locus_tag=CFSAN001082_RS37870;product=D-threonate kinase;protein_id=WP_023254490.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	2362	3345	.	+	.	ID=gene-CFSAN001082_RS37875;Name=CFSAN001082_RS37875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37875;old_locus_tag=CFSAN001082_14216
NZ_APAH01000278.1	Protein Homology	CDS	2362	3345	.	+	0	ID=cds-WP_000448749.1;Parent=gene-CFSAN001082_RS37875;Dbxref=GenBank:WP_000448749.1;Name=WP_000448749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459168.1;locus_tag=CFSAN001082_RS37875;product=D-threonate 4-phosphate dehydrogenase;protein_id=WP_000448749.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	3355	4122	.	+	.	ID=gene-CFSAN001082_RS37880;Name=CFSAN001082_RS37880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37880;old_locus_tag=CFSAN001082_14221
NZ_APAH01000278.1	Protein Homology	CDS	3355	4122	.	+	0	ID=cds-WP_000678254.1;Parent=gene-CFSAN001082_RS37880;Dbxref=GenBank:WP_000678254.1;Name=WP_000678254.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459169.1;locus_tag=CFSAN001082_RS37880;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_000678254.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	4152	4946	.	-	.	ID=gene-CFSAN001082_RS37885;Name=speD;gbkey=Gene;gene=speD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37885;old_locus_tag=CFSAN001082_14226
NZ_APAH01000278.1	Protein Homology	CDS	4152	4946	.	-	0	ID=cds-WP_000734276.1;Parent=gene-CFSAN001082_RS37885;Dbxref=GenBank:WP_000734276.1;Name=WP_000734276.1;Ontology_term=GO:0008295,GO:0004014;gbkey=CDS;gene=speD;go_function=adenosylmethionine decarboxylase activity|0004014||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459170.1;locus_tag=CFSAN001082_RS37885;product=adenosylmethionine decarboxylase;protein_id=WP_000734276.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	4967	5827	.	-	.	ID=gene-CFSAN001082_RS37890;Name=speE;gbkey=Gene;gene=speE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37890;old_locus_tag=CFSAN001082_14231
NZ_APAH01000278.1	Protein Homology	CDS	4967	5827	.	-	0	ID=cds-WP_023254491.1;Parent=gene-CFSAN001082_RS37890;Dbxref=GenBank:WP_023254491.1;Name=WP_023254491.1;gbkey=CDS;gene=speE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459171.1;locus_tag=CFSAN001082_RS37890;product=polyamine aminopropyltransferase;protein_id=WP_023254491.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	5934	6281	.	-	.	ID=gene-CFSAN001082_RS37895;Name=CFSAN001082_RS37895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37895;old_locus_tag=CFSAN001082_14236
NZ_APAH01000278.1	Protein Homology	CDS	5934	6281	.	-	0	ID=cds-WP_000846613.1;Parent=gene-CFSAN001082_RS37895;Dbxref=GenBank:WP_000846613.1;Name=WP_000846613.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459172.1;locus_tag=CFSAN001082_RS37895;product=YacC family pilotin-like protein;protein_id=WP_000846613.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	6483	8093	.	+	.	ID=gene-CFSAN001082_RS37900;Name=cueO;gbkey=Gene;gene=cueO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37900;old_locus_tag=CFSAN001082_14241
NZ_APAH01000278.1	Protein Homology	CDS	6483	8093	.	+	0	ID=cds-WP_023254492.1;Parent=gene-CFSAN001082_RS37900;Dbxref=GenBank:WP_023254492.1;Name=WP_023254492.1;Ontology_term=GO:0005507,GO:0016491;gbkey=CDS;gene=cueO;go_function=copper ion binding|0005507||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459173.1;locus_tag=CFSAN001082_RS37900;product=multicopper oxidase CueO;protein_id=WP_023254492.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	8171	10561	.	-	.	ID=gene-CFSAN001082_RS37905;Name=CFSAN001082_RS37905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37905;old_locus_tag=CFSAN001082_14246
NZ_APAH01000278.1	Protein Homology	CDS	8171	10561	.	-	0	ID=cds-WP_023254493.1;Parent=gene-CFSAN001082_RS37905;Dbxref=GenBank:WP_023254493.1;Name=WP_023254493.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459174.1;locus_tag=CFSAN001082_RS37905;product=glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase;protein_id=WP_023254493.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	10767	11303	.	+	.	ID=gene-CFSAN001082_RS37910;Name=hpt;gbkey=Gene;gene=hpt;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37910;old_locus_tag=CFSAN001082_14251
NZ_APAH01000278.1	Protein Homology	CDS	10767	11303	.	+	0	ID=cds-WP_000683342.1;Parent=gene-CFSAN001082_RS37910;Dbxref=GenBank:WP_000683342.1;Name=WP_000683342.1;Ontology_term=GO:0006166;gbkey=CDS;gene=hpt;go_process=purine ribonucleoside salvage|0006166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004204384.1;locus_tag=CFSAN001082_RS37910;product=hypoxanthine phosphoribosyltransferase;protein_id=WP_000683342.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	11361	12023	.	-	.	ID=gene-CFSAN001082_RS37915;Name=can;gbkey=Gene;gene=can;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37915;old_locus_tag=CFSAN001082_14256
NZ_APAH01000278.1	Protein Homology	CDS	11361	12023	.	-	0	ID=cds-WP_000651591.1;Parent=gene-CFSAN001082_RS37915;Dbxref=GenBank:WP_000651591.1;Name=WP_000651591.1;Ontology_term=GO:0015976,GO:0004089,GO:0008270;gbkey=CDS;gene=can;go_function=carbonate dehydratase activity|0004089||IEA,zinc ion binding|0008270||IEA;go_process=carbon utilization|0015976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459176.1;locus_tag=CFSAN001082_RS37915;product=carbonate dehydratase;protein_id=WP_000651591.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	12132	13058	.	+	.	ID=gene-CFSAN001082_RS37920;Name=CFSAN001082_RS37920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37920;old_locus_tag=CFSAN001082_14261
NZ_APAH01000278.1	Protein Homology	CDS	12132	13058	.	+	0	ID=cds-WP_000150625.1;Parent=gene-CFSAN001082_RS37920;Dbxref=GenBank:WP_000150625.1;Name=WP_000150625.1;Ontology_term=GO:0005524,GO:0016887,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459177.1;locus_tag=CFSAN001082_RS37920;product=ABC transporter ATP-binding protein;protein_id=WP_000150625.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	13055	13825	.	+	.	ID=gene-CFSAN001082_RS37925;Name=CFSAN001082_RS37925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37925;old_locus_tag=CFSAN001082_14266
NZ_APAH01000278.1	Protein Homology	CDS	13055	13825	.	+	0	ID=cds-WP_000983418.1;Parent=gene-CFSAN001082_RS37925;Dbxref=GenBank:WP_000983418.1;Name=WP_000983418.1;Ontology_term=GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747261.1;locus_tag=CFSAN001082_RS37925;product=ABC transporter permease;protein_id=WP_000983418.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	13939	15015	.	-	.	ID=gene-CFSAN001082_RS37930;Name=CFSAN001082_RS37930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37930;old_locus_tag=CFSAN001082_14271
NZ_APAH01000278.1	Protein Homology	CDS	13939	15015	.	-	0	ID=cds-WP_000794032.1;Parent=gene-CFSAN001082_RS37930;Dbxref=GenBank:WP_000794032.1;Name=WP_000794032.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459179.1;locus_tag=CFSAN001082_RS37930;product=fimbrial protein;protein_id=WP_000794032.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	15024	17570	.	-	.	ID=gene-CFSAN001082_RS37935;Name=CFSAN001082_RS37935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37935;old_locus_tag=CFSAN001082_14276
NZ_APAH01000278.1	Protein Homology	CDS	15024	17570	.	-	0	ID=cds-WP_023254494.1;Parent=gene-CFSAN001082_RS37935;Dbxref=GenBank:WP_023254494.1;Name=WP_023254494.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459180.1;locus_tag=CFSAN001082_RS37935;product=fimbrial outer membrane usher protein;protein_id=WP_023254494.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	17597	18280	.	-	.	ID=gene-CFSAN001082_RS37940;Name=stiB;gbkey=Gene;gene=stiB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37940;old_locus_tag=CFSAN001082_14281
NZ_APAH01000278.1	Protein Homology	CDS	17597	18280	.	-	0	ID=cds-WP_023205847.1;Parent=gene-CFSAN001082_RS37940;Dbxref=GenBank:WP_023205847.1;Name=WP_023205847.1;gbkey=CDS;gene=stiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459181.1;locus_tag=CFSAN001082_RS37940;product=fimbrial biogenesis chaperone StiB;protein_id=WP_023205847.1;transl_table=11
NZ_APAH01000278.1	RefSeq	gene	18328	18861	.	-	.	ID=gene-CFSAN001082_RS37945;Name=stiA;gbkey=Gene;gene=stiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37945;old_locus_tag=CFSAN001082_14286
NZ_APAH01000278.1	Protein Homology	CDS	18328	18861	.	-	0	ID=cds-WP_023254495.1;Parent=gene-CFSAN001082_RS37945;Dbxref=GenBank:WP_023254495.1;Name=WP_023254495.1;gbkey=CDS;gene=stiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459182.1;locus_tag=CFSAN001082_RS37945;product=Sti fimbria major subunit StiA;protein_id=WP_023254495.1;transl_table=11
##sequence-region NZ_APAH01000279.1 1 354
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000279.1	RefSeq	region	1	354	.	+	.	ID=NZ_APAH01000279.1:1..354;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000279.1	RefSeq	gene	1	84	.	+	.	ID=gene-CFSAN001082_RS49245;Name=CFSAN001082_RS49245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49245;old_locus_tag=CFSAN001082_14291;partial=true;start_range=.,1
NZ_APAH01000279.1	Protein Homology	CDS	1	84	.	+	0	ID=cds-WP_023254496.1;Parent=gene-CFSAN001082_RS49245;Dbxref=GenBank:WP_023254496.1;Name=WP_023254496.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460610.1;locus_tag=CFSAN001082_RS49245;partial=true;product=hypothetical protein;protein_id=WP_023254496.1;start_range=.,1;transl_table=11
NZ_APAH01000279.1	RefSeq	gene	143	354	.	-	.	ID=gene-CFSAN001082_RS48925;Name=CFSAN001082_RS48925;end_range=354,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48925;old_locus_tag=CFSAN001082_14296;partial=true
NZ_APAH01000279.1	GeneMarkS-2+	CDS	143	354	.	-	2	ID=cds-WP_000936583.1;Parent=gene-CFSAN001082_RS48925;Dbxref=GenBank:WP_000936583.1;Name=WP_000936583.1;end_range=354,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48925;partial=true;product=hypothetical protein;protein_id=WP_000936583.1;transl_table=11
##sequence-region NZ_APAH01000280.1 1 566
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000280.1	RefSeq	region	1	566	.	+	.	ID=NZ_APAH01000280.1:1..566;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000280.1	RefSeq	gene	1	375	.	-	.	ID=gene-CFSAN001082_RS37955;Name=CFSAN001082_RS37955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37955;old_locus_tag=CFSAN001082_14301;partial=true;start_range=.,1
NZ_APAH01000280.1	Protein Homology	CDS	1	375	.	-	0	ID=cds-WP_141087458.1;Parent=gene-CFSAN001082_RS37955;Dbxref=GenBank:WP_141087458.1;Name=WP_141087458.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001068243.1;locus_tag=CFSAN001082_RS37955;partial=true;product=hypothetical protein;protein_id=WP_141087458.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000281.1 1 39264
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000281.1	RefSeq	region	1	39264	.	+	.	ID=NZ_APAH01000281.1:1..39264;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000281.1	RefSeq	gene	112	615	.	+	.	ID=gene-CFSAN001082_RS37960;Name=dps;gbkey=Gene;gene=dps;gene_biotype=protein_coding;gene_synonym=pexB;locus_tag=CFSAN001082_RS37960;old_locus_tag=CFSAN001082_14306
NZ_APAH01000281.1	Protein Homology	CDS	112	615	.	+	0	ID=cds-WP_000100805.1;Parent=gene-CFSAN001082_RS37960;Dbxref=GenBank:WP_000100805.1;Name=WP_000100805.1;Ontology_term=GO:0016722;gbkey=CDS;gene=dps;go_function=oxidoreductase activity%2C acting on metal ions|0016722||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001730644.1;locus_tag=CFSAN001082_RS37960;product=DNA starvation/stationary phase protection protein Dps;protein_id=WP_000100805.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	1092	1838	.	+	.	ID=gene-CFSAN001082_RS37965;Name=glnH;gbkey=Gene;gene=glnH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37965;old_locus_tag=CFSAN001082_14311
NZ_APAH01000281.1	Protein Homology	CDS	1092	1838	.	+	0	ID=cds-WP_000838671.1;Parent=gene-CFSAN001082_RS37965;Dbxref=GenBank:WP_000838671.1;Name=WP_000838671.1;Ontology_term=GO:1903803,GO:0015599,GO:0043190;gbkey=CDS;gene=glnH;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled L-glutamine transmembrane transporter activity|0015599||IEA;go_process=L-glutamine import across plasma membrane|1903803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123681.1;locus_tag=CFSAN001082_RS37965;product=glutamine ABC transporter substrate-binding protein GlnH;protein_id=WP_000838671.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	1984	2643	.	+	.	ID=gene-CFSAN001082_RS37970;Name=glnP;gbkey=Gene;gene=glnP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37970;old_locus_tag=CFSAN001082_14316
NZ_APAH01000281.1	Protein Homology	CDS	1984	2643	.	+	0	ID=cds-WP_001159076.1;Parent=gene-CFSAN001082_RS37970;Dbxref=GenBank:WP_001159076.1;Name=WP_001159076.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=glnP;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015367581.1;locus_tag=CFSAN001082_RS37970;product=glutamine ABC transporter permease GlnP;protein_id=WP_001159076.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	2640	3362	.	+	.	ID=gene-CFSAN001082_RS37975;Name=glnQ;gbkey=Gene;gene=glnQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37975;old_locus_tag=CFSAN001082_14321
NZ_APAH01000281.1	Protein Homology	CDS	2640	3362	.	+	0	ID=cds-WP_000569093.1;Parent=gene-CFSAN001082_RS37975;Dbxref=GenBank:WP_000569093.1;Name=WP_000569093.1;Ontology_term=GO:0003333,GO:0005524,GO:0015424;gbkey=CDS;gene=glnQ;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000569103.1;locus_tag=CFSAN001082_RS37975;product=glutamine ABC transporter ATP-binding protein GlnQ;protein_id=WP_000569093.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	3481	5703	.	+	.	ID=gene-CFSAN001082_RS37980;Name=ybiO;gbkey=Gene;gene=ybiO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37980;old_locus_tag=CFSAN001082_14326
NZ_APAH01000281.1	Protein Homology	CDS	3481	5703	.	+	0	ID=cds-WP_017441938.1;Parent=gene-CFSAN001082_RS37980;Dbxref=GenBank:WP_017441938.1;Name=WP_017441938.1;Ontology_term=GO:0055085;gbkey=CDS;gene=ybiO;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459804.1;locus_tag=CFSAN001082_RS37980;product=mechanosensitive channel protein;protein_id=WP_017441938.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	5700	6626	.	-	.	ID=gene-CFSAN001082_RS37985;Name=rlmF;gbkey=Gene;gene=rlmF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37985;old_locus_tag=CFSAN001082_14331
NZ_APAH01000281.1	Protein Homology	CDS	5700	6626	.	-	0	ID=cds-WP_001275964.1;Parent=gene-CFSAN001082_RS37985;Dbxref=GenBank:WP_001275964.1;Name=WP_001275964.1;Ontology_term=GO:0006364,GO:0008988;gbkey=CDS;gene=rlmF;go_function=rRNA (adenine-N6-)-methyltransferase activity|0008988||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459803.1;locus_tag=CFSAN001082_RS37985;product=23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF;protein_id=WP_001275964.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	6831	7097	.	+	.	ID=gene-CFSAN001082_RS37990;Name=CFSAN001082_RS37990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37990;old_locus_tag=CFSAN001082_14336
NZ_APAH01000281.1	Protein Homology	CDS	6831	7097	.	+	0	ID=cds-WP_000146332.1;Parent=gene-CFSAN001082_RS37990;Dbxref=GenBank:WP_000146332.1;Name=WP_000146332.1;Ontology_term=GO:0008270;gbkey=CDS;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459802.1;locus_tag=CFSAN001082_RS37990;product=DksA/TraR family C4-type zinc finger protein;protein_id=WP_000146332.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	7382	7642	.	+	.	ID=gene-CFSAN001082_RS37995;Name=ybiJ;gbkey=Gene;gene=ybiJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS37995;old_locus_tag=CFSAN001082_14341
NZ_APAH01000281.1	Protein Homology	CDS	7382	7642	.	+	0	ID=cds-WP_000849089.1;Parent=gene-CFSAN001082_RS37995;Dbxref=GenBank:WP_000849089.1;Name=WP_000849089.1;gbkey=CDS;gene=ybiJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459801.1;locus_tag=CFSAN001082_RS37995;product=DUF1471 family protein YbiJ;protein_id=WP_000849089.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	7798	8772	.	-	.	ID=gene-CFSAN001082_RS38000;Name=ybiB;gbkey=Gene;gene=ybiB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38000;old_locus_tag=CFSAN001082_14346
NZ_APAH01000281.1	Protein Homology	CDS	7798	8772	.	-	0	ID=cds-WP_023240879.1;Parent=gene-CFSAN001082_RS38000;Dbxref=GenBank:WP_023240879.1;Name=WP_023240879.1;gbkey=CDS;gene=ybiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459800.1;locus_tag=CFSAN001082_RS38000;product=DNA-binding protein YbiB;protein_id=WP_023240879.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	8802	10946	.	-	.	ID=gene-CFSAN001082_RS38005;Name=dinG;gbkey=Gene;gene=dinG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38005;old_locus_tag=CFSAN001082_14351
NZ_APAH01000281.1	Protein Homology	CDS	8802	10946	.	-	0	ID=cds-WP_001218637.1;Parent=gene-CFSAN001082_RS38005;Dbxref=GenBank:WP_001218637.1;Name=WP_001218637.1;Ontology_term=GO:0006139,GO:0003677,GO:0003678,GO:0005524,GO:0016818;gbkey=CDS;gene=dinG;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459799.1;locus_tag=CFSAN001082_RS38005;product=ATP-dependent DNA helicase DinG;protein_id=WP_001218637.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	11154	12524	.	-	.	ID=gene-CFSAN001082_RS38010;Name=rhlE;gbkey=Gene;gene=rhlE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38010;old_locus_tag=CFSAN001082_14356
NZ_APAH01000281.1	Protein Homology	CDS	11154	12524	.	-	0	ID=cds-WP_023254498.1;Parent=gene-CFSAN001082_RS38010;Dbxref=GenBank:WP_023254498.1;Name=WP_023254498.1;Ontology_term=GO:0003724;gbkey=CDS;gene=rhlE;go_function=RNA helicase activity|0003724||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459798.1;locus_tag=CFSAN001082_RS38010;product=ATP-dependent RNA helicase RhlE;protein_id=WP_023254498.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	12706	15318	.	-	.	ID=gene-CFSAN001082_RS38015;Name=adhE;gbkey=Gene;gene=adhE;gene_biotype=protein_coding;gene_synonym=adhC;locus_tag=CFSAN001082_RS38015;old_locus_tag=CFSAN001082_14361
NZ_APAH01000281.1	Protein Homology	CDS	12706	15318	.	-	0	ID=cds-WP_023254499.1;Parent=gene-CFSAN001082_RS38015;Dbxref=GenBank:WP_023254499.1;Name=WP_023254499.1;Ontology_term=GO:0006066,GO:0015976,GO:0004022,GO:0016620,GO:0046872;gbkey=CDS;gene=adhE;go_function=alcohol dehydrogenase (NAD+) activity|0004022||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,metal ion binding|0046872||IEA;go_process=alcohol metabolic process|0006066||IEA,carbon utilization|0015976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001668046.1;locus_tag=CFSAN001082_RS38015;product=bifunctional acetaldehyde-CoA/alcohol dehydrogenase;protein_id=WP_023254499.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	15375	16367	.	-	.	ID=gene-CFSAN001082_RS38020;Name=CFSAN001082_RS38020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38020;old_locus_tag=CFSAN001082_14366
NZ_APAH01000281.1	Protein Homology	CDS	15375	16367	.	-	0	ID=cds-WP_000083414.1;Parent=gene-CFSAN001082_RS38020;Dbxref=GenBank:WP_000083414.1;Name=WP_000083414.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004183482.1;locus_tag=CFSAN001082_RS38020;product=transketolase family protein;protein_id=WP_000083414.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	16367	17212	.	-	.	ID=gene-CFSAN001082_RS38025;Name=CFSAN001082_RS38025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38025;old_locus_tag=CFSAN001082_14371
NZ_APAH01000281.1	Protein Homology	CDS	16367	17212	.	-	0	ID=cds-WP_000784291.1;Parent=gene-CFSAN001082_RS38025;Dbxref=GenBank:WP_000784291.1;Name=WP_000784291.1;Ontology_term=GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225957.1;locus_tag=CFSAN001082_RS38025;product=transketolase;protein_id=WP_000784291.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	17226	17975	.	-	.	ID=gene-CFSAN001082_RS38030;Name=CFSAN001082_RS38030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38030;old_locus_tag=CFSAN001082_14376
NZ_APAH01000281.1	Protein Homology	CDS	17226	17975	.	-	0	ID=cds-WP_000924697.1;Parent=gene-CFSAN001082_RS38030;Dbxref=GenBank:WP_000924697.1;Name=WP_000924697.1;Ontology_term=GO:0016491,GO:0070403;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225956.1;locus_tag=CFSAN001082_RS38030;product=SDR family NAD(P)-dependent oxidoreductase;protein_id=WP_000924697.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	18026	19357	.	-	.	ID=gene-CFSAN001082_RS38035;Name=CFSAN001082_RS38035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38035;old_locus_tag=CFSAN001082_14381
NZ_APAH01000281.1	Protein Homology	CDS	18026	19357	.	-	0	ID=cds-WP_001518324.1;Parent=gene-CFSAN001082_RS38035;Dbxref=GenBank:WP_001518324.1;Name=WP_001518324.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225955.1;locus_tag=CFSAN001082_RS38035;product=MFS transporter;protein_id=WP_001518324.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	19899	20822	.	+	.	ID=gene-CFSAN001082_RS38040;Name=CFSAN001082_RS38040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38040;old_locus_tag=CFSAN001082_14386
NZ_APAH01000281.1	Protein Homology	CDS	19899	20822	.	+	0	ID=cds-WP_001075547.1;Parent=gene-CFSAN001082_RS38040;Dbxref=GenBank:WP_001075547.1;Name=WP_001075547.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225953.1;locus_tag=CFSAN001082_RS38040;product=LysR substrate-binding domain-containing protein;protein_id=WP_001075547.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	20896	21570	.	+	.	ID=gene-CFSAN001082_RS38045;Name=cecR;gbkey=Gene;gene=cecR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38045;old_locus_tag=CFSAN001082_14391
NZ_APAH01000281.1	Protein Homology	CDS	20896	21570	.	+	0	ID=cds-WP_001025254.1;Parent=gene-CFSAN001082_RS38045;Dbxref=GenBank:WP_001025254.1;Name=WP_001025254.1;gbkey=CDS;gene=cecR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459797.1;locus_tag=CFSAN001082_RS38045;product=transcriptional regulator CecR;protein_id=WP_001025254.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	21570	22565	.	+	.	ID=gene-CFSAN001082_RS38050;Name=hlyD;gbkey=Gene;gene=hlyD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38050;old_locus_tag=CFSAN001082_14396
NZ_APAH01000281.1	Protein Homology	CDS	21570	22565	.	+	0	ID=cds-WP_000743431.1;Parent=gene-CFSAN001082_RS38050;Dbxref=GenBank:WP_000743431.1;Name=WP_000743431.1;gbkey=CDS;gene=hlyD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459796.1;locus_tag=CFSAN001082_RS38050;product=secretion protein HlyD;protein_id=WP_000743431.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	22558	24294	.	+	.	ID=gene-CFSAN001082_RS38055;Name=CFSAN001082_RS38055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38055;old_locus_tag=CFSAN001082_14401
NZ_APAH01000281.1	Protein Homology	CDS	22558	24294	.	+	0	ID=cds-WP_023254500.1;Parent=gene-CFSAN001082_RS38055;Dbxref=GenBank:WP_023254500.1;Name=WP_023254500.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459795.1;locus_tag=CFSAN001082_RS38055;product=ATP-binding cassette domain-containing protein;protein_id=WP_023254500.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	24287	25417	.	+	.	ID=gene-CFSAN001082_RS38060;Name=CFSAN001082_RS38060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38060;old_locus_tag=CFSAN001082_14406
NZ_APAH01000281.1	Protein Homology	CDS	24287	25417	.	+	0	ID=cds-WP_000045765.1;Parent=gene-CFSAN001082_RS38060;Dbxref=GenBank:WP_000045765.1;Name=WP_000045765.1;Ontology_term=GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459794.1;locus_tag=CFSAN001082_RS38060;product=ABC transporter permease;protein_id=WP_000045765.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	25533	26639	.	+	.	ID=gene-CFSAN001082_RS38065;Name=CFSAN001082_RS38065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38065;old_locus_tag=CFSAN001082_14411
NZ_APAH01000281.1	Protein Homology	CDS	25533	26639	.	+	0	ID=cds-WP_000469044.1;Parent=gene-CFSAN001082_RS38065;Dbxref=GenBank:WP_000469044.1;Name=WP_000469044.1;Ontology_term=GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459793.1;locus_tag=CFSAN001082_RS38065;product=ABC transporter permease;protein_id=WP_000469044.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	26601	27011	.	-	.	ID=gene-CFSAN001082_RS38070;Name=CFSAN001082_RS38070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38070;old_locus_tag=CFSAN001082_14416
NZ_APAH01000281.1	Protein Homology	CDS	26601	27011	.	-	0	ID=cds-WP_000871970.1;Parent=gene-CFSAN001082_RS38070;Dbxref=GenBank:WP_000871970.1;Name=WP_000871970.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459792.1;locus_tag=CFSAN001082_RS38070;product=YbhQ family protein;protein_id=WP_000871970.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	27144	27902	.	+	.	ID=gene-CFSAN001082_RS38075;Name=CFSAN001082_RS38075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38075;old_locus_tag=CFSAN001082_14421
NZ_APAH01000281.1	Protein Homology	CDS	27144	27902	.	+	0	ID=cds-WP_023197297.1;Parent=gene-CFSAN001082_RS38075;Dbxref=GenBank:WP_023197297.1;Name=WP_023197297.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459791.1;locus_tag=CFSAN001082_RS38075;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_023197297.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	27899	29140	.	+	.	ID=gene-CFSAN001082_RS38080;Name=clsB;gbkey=Gene;gene=clsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38080;old_locus_tag=CFSAN001082_14426
NZ_APAH01000281.1	Protein Homology	CDS	27899	29140	.	+	0	ID=cds-WP_023254501.1;Parent=gene-CFSAN001082_RS38080;Dbxref=GenBank:WP_023254501.1;Name=WP_023254501.1;Ontology_term=GO:0032049,GO:0008808;gbkey=CDS;gene=clsB;go_function=cardiolipin synthase activity|0008808||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459790.1;locus_tag=CFSAN001082_RS38080;product=cardiolipin synthase ClsB;protein_id=WP_023254501.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	29140	30102	.	+	.	ID=gene-CFSAN001082_RS38085;Name=CFSAN001082_RS38085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38085;old_locus_tag=CFSAN001082_14431
NZ_APAH01000281.1	Protein Homology	CDS	29140	30102	.	+	0	ID=cds-WP_023215095.1;Parent=gene-CFSAN001082_RS38085;Dbxref=GenBank:WP_023215095.1;Name=WP_023215095.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459789.1;locus_tag=CFSAN001082_RS38085;product=lysylphosphatidylglycerol synthase transmembrane domain-containing protein;protein_id=WP_023215095.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	30105	30665	.	-	.	ID=gene-CFSAN001082_RS38090;Name=CFSAN001082_RS38090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38090;old_locus_tag=CFSAN001082_14436
NZ_APAH01000281.1	Protein Homology	CDS	30105	30665	.	-	0	ID=cds-WP_023215096.1;Parent=gene-CFSAN001082_RS38090;Dbxref=GenBank:WP_023215096.1;Name=WP_023215096.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459788.1;locus_tag=CFSAN001082_RS38090;product=hypothetical protein;protein_id=WP_023215096.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	30673	31281	.	-	.	ID=gene-CFSAN001082_RS38095;Name=CFSAN001082_RS38095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38095;old_locus_tag=CFSAN001082_14441
NZ_APAH01000281.1	Protein Homology	CDS	30673	31281	.	-	0	ID=cds-WP_077911112.1;Parent=gene-CFSAN001082_RS38095;Dbxref=GenBank:WP_077911112.1;Name=WP_077911112.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459787.1;locus_tag=CFSAN001082_RS38095;product=hypothetical protein;protein_id=WP_077911112.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	31305	32012	.	-	.	ID=gene-CFSAN001082_RS38100;Name=CFSAN001082_RS38100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38100;old_locus_tag=CFSAN001082_14446
NZ_APAH01000281.1	Protein Homology	CDS	31305	32012	.	-	0	ID=cds-WP_023215098.1;Parent=gene-CFSAN001082_RS38100;Dbxref=GenBank:WP_023215098.1;Name=WP_023215098.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459786.1;locus_tag=CFSAN001082_RS38100;product=Bax inhibitor-1 family protein;protein_id=WP_023215098.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	32158	32862	.	-	.	ID=gene-CFSAN001082_RS38105;Name=CFSAN001082_RS38105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38105;old_locus_tag=CFSAN001082_14451
NZ_APAH01000281.1	Protein Homology	CDS	32158	32862	.	-	0	ID=cds-WP_000373611.1;Parent=gene-CFSAN001082_RS38105;Dbxref=GenBank:WP_000373611.1;Name=WP_000373611.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459785.1;locus_tag=CFSAN001082_RS38105;product=Bax inhibitor-1/YccA family protein;protein_id=WP_000373611.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	32910	33362	.	-	.	ID=gene-CFSAN001082_RS38110;Name=moaE;gbkey=Gene;gene=moaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38110;old_locus_tag=CFSAN001082_14456
NZ_APAH01000281.1	Protein Homology	CDS	32910	33362	.	-	0	ID=cds-WP_001209385.1;Parent=gene-CFSAN001082_RS38110;Dbxref=GenBank:WP_001209385.1;Name=WP_001209385.1;Ontology_term=GO:0006777;gbkey=CDS;gene=moaE;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459784.1;locus_tag=CFSAN001082_RS38110;product=molybdopterin synthase catalytic subunit MoaE;protein_id=WP_001209385.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	33364	33609	.	-	.	ID=gene-CFSAN001082_RS38115;Name=moaD;gbkey=Gene;gene=moaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38115;old_locus_tag=CFSAN001082_14461
NZ_APAH01000281.1	Protein Homology	CDS	33364	33609	.	-	0	ID=cds-WP_000598599.1;Parent=gene-CFSAN001082_RS38115;Dbxref=GenBank:WP_000598599.1;Name=WP_000598599.1;Ontology_term=GO:0006777;gbkey=CDS;gene=moaD;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308889.1;locus_tag=CFSAN001082_RS38115;product=molybdopterin synthase sulfur carrier subunit;protein_id=WP_000598599.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	33602	34087	.	-	.	ID=gene-CFSAN001082_RS38120;Name=moaC;gbkey=Gene;gene=moaC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38120;old_locus_tag=CFSAN001082_14466
NZ_APAH01000281.1	Protein Homology	CDS	33602	34087	.	-	0	ID=cds-WP_000080894.1;Parent=gene-CFSAN001082_RS38120;Dbxref=GenBank:WP_000080894.1;Name=WP_000080894.1;Ontology_term=GO:0006777,GO:0061799;gbkey=CDS;gene=moaC;go_function=cyclic pyranopterin monophosphate synthase activity|0061799||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459782.1;locus_tag=CFSAN001082_RS38120;product=cyclic pyranopterin monophosphate synthase MoaC;protein_id=WP_000080894.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	34090	34602	.	-	.	ID=gene-CFSAN001082_RS38125;Name=moaB;gbkey=Gene;gene=moaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38125;old_locus_tag=CFSAN001082_14471
NZ_APAH01000281.1	Protein Homology	CDS	34090	34602	.	-	0	ID=cds-WP_000084604.1;Parent=gene-CFSAN001082_RS38125;Dbxref=GenBank:WP_000084604.1;Name=WP_000084604.1;Ontology_term=GO:0006777,GO:0003824;gbkey=CDS;gene=moaB;go_function=catalytic activity|0003824||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123739.1;locus_tag=CFSAN001082_RS38125;product=molybdenum cofactor biosynthesis protein B;protein_id=WP_000084604.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	34624	35613	.	-	.	ID=gene-CFSAN001082_RS38130;Name=moaA;gbkey=Gene;gene=moaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38130;old_locus_tag=CFSAN001082_14476
NZ_APAH01000281.1	Protein Homology	CDS	34624	35613	.	-	0	ID=cds-WP_000168182.1;Parent=gene-CFSAN001082_RS38130;Dbxref=GenBank:WP_000168182.1;Name=WP_000168182.1;Ontology_term=GO:0006777,GO:0046872,GO:0051539;gbkey=CDS;gene=moaA;go_function=metal ion binding|0046872||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459780.1;locus_tag=CFSAN001082_RS38130;product=GTP 3'%2C8-cyclase MoaA;protein_id=WP_000168182.1;transl_table=11
NZ_APAH01000281.1	cmsearch	riboswitch	35601	35745	.	-	.	ID=id-NZ_APAH01000281.1:35601..35745;Dbxref=RFAM:RF01055;Note=molybdenum cofactor riboswitch;bound_moiety=molybdenum cofactor;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_APAH01000281.1	RefSeq	gene	36010	36918	.	+	.	ID=gene-CFSAN001082_RS38135;Name=yvcK;gbkey=Gene;gene=yvcK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38135;old_locus_tag=CFSAN001082_14481
NZ_APAH01000281.1	Protein Homology	CDS	36010	36918	.	+	0	ID=cds-WP_001246033.1;Parent=gene-CFSAN001082_RS38135;Dbxref=GenBank:WP_001246033.1;Name=WP_001246033.1;gbkey=CDS;gene=yvcK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459779.1;locus_tag=CFSAN001082_RS38135;product=uridine diphosphate-N-acetylglucosamine-binding protein YvcK;protein_id=WP_001246033.1;transl_table=11
NZ_APAH01000281.1	RefSeq	gene	37010	39264	.	-	.	ID=gene-CFSAN001082_RS38140;Name=slrP;end_range=39264,.;gbkey=Gene;gene=slrP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38140;old_locus_tag=CFSAN001082_14486;partial=true
NZ_APAH01000281.1	Protein Homology	CDS	37010	39264	.	-	2	ID=cds-WP_023254502.1;Parent=gene-CFSAN001082_RS38140;Dbxref=GenBank:WP_023254502.1;Name=WP_023254502.1;end_range=39264,.;gbkey=CDS;gene=slrP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459778.1;locus_tag=CFSAN001082_RS38140;partial=true;product=SPI-1 type III secretion system effector E3 ubiquitin transferase SlrP;protein_id=WP_023254502.1;transl_table=11
##sequence-region NZ_APAH01000282.1 1 3860
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000282.1	RefSeq	region	1	3860	.	+	.	ID=NZ_APAH01000282.1:1..3860;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000282.1	RefSeq	gene	11	1093	.	+	.	ID=gene-CFSAN001082_RS38145;Name=ompD;gbkey=Gene;gene=ompD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38145;old_locus_tag=CFSAN001082_14491
NZ_APAH01000282.1	Protein Homology	CDS	11	1093	.	+	0	ID=cds-WP_000769043.1;Parent=gene-CFSAN001082_RS38145;Dbxref=GenBank:WP_000769043.1;Name=WP_000769043.1;gbkey=CDS;gene=ompD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460531.1;locus_tag=CFSAN001082_RS38145;product=porin OmpD;protein_id=WP_000769043.1;transl_table=11
NZ_APAH01000282.1	RefSeq	gene	1237	1617	.	+	.	ID=gene-CFSAN001082_RS38150;Name=CFSAN001082_RS38150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38150;old_locus_tag=CFSAN001082_14496
NZ_APAH01000282.1	Protein Homology	CDS	1237	1617	.	+	0	ID=cds-WP_014343841.1;Parent=gene-CFSAN001082_RS38150;Dbxref=GenBank:WP_014343841.1;Name=WP_014343841.1;Ontology_term=GO:0016846,GO:0046872;gbkey=CDS;go_function=carbon-sulfur lyase activity|0016846||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460532.3;locus_tag=CFSAN001082_RS38150;product=GFA family protein;protein_id=WP_014343841.1;transl_table=11
NZ_APAH01000282.1	RefSeq	gene	1642	3129	.	-	.	ID=gene-CFSAN001082_RS38155;Name=smvA;gbkey=Gene;gene=smvA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38155;old_locus_tag=CFSAN001082_14501
NZ_APAH01000282.1	Protein Homology	CDS	1642	3129	.	-	0	ID=cds-WP_023254503.1;Parent=gene-CFSAN001082_RS38155;Dbxref=GenBank:WP_023254503.1;Name=WP_023254503.1;gbkey=CDS;gene=smvA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460533.1;locus_tag=CFSAN001082_RS38155;product=methyl viologen efflux MFS transporter SmvA;protein_id=WP_023254503.1;transl_table=11
NZ_APAH01000282.1	RefSeq	gene	3247	3825	.	+	.	ID=gene-CFSAN001082_RS38160;Name=CFSAN001082_RS38160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38160;old_locus_tag=CFSAN001082_14506
NZ_APAH01000282.1	Protein Homology	CDS	3247	3825	.	+	0	ID=cds-WP_000121049.1;Parent=gene-CFSAN001082_RS38160;Dbxref=GenBank:WP_000121049.1;Name=WP_000121049.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460534.1;locus_tag=CFSAN001082_RS38160;product=TetR family transcriptional regulator;protein_id=WP_000121049.1;transl_table=11
##sequence-region NZ_APAH01000283.1 1 27809
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000283.1	RefSeq	region	1	27809	.	+	.	ID=NZ_APAH01000283.1:1..27809;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000283.1	RefSeq	gene	1	415	.	+	.	ID=gene-CFSAN001082_RS38165;Name=CFSAN001082_RS38165;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS38165;old_locus_tag=CFSAN001082_r14655;partial=true;start_range=.,1
NZ_APAH01000283.1	cmsearch	rRNA	1	415	.	+	.	ID=rna-CFSAN001082_RS38165;Parent=gene-CFSAN001082_RS38165;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS38165;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_APAH01000283.1	cmsearch	exon	1	415	.	+	.	ID=exon-CFSAN001082_RS38165-1;Parent=rna-CFSAN001082_RS38165;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS38165;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_APAH01000283.1	RefSeq	gene	613	728	.	+	.	ID=gene-CFSAN001082_RS38170;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=CFSAN001082_RS38170;old_locus_tag=CFSAN001082_r14653
NZ_APAH01000283.1	cmsearch	rRNA	613	728	.	+	.	ID=rna-CFSAN001082_RS38170;Parent=gene-CFSAN001082_RS38170;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS38170;product=5S ribosomal RNA
NZ_APAH01000283.1	cmsearch	exon	613	728	.	+	.	ID=exon-CFSAN001082_RS38170-1;Parent=rna-CFSAN001082_RS38170;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS38170;product=5S ribosomal RNA
NZ_APAH01000283.1	RefSeq	gene	937	1392	.	+	.	ID=gene-CFSAN001082_RS38175;Name=CFSAN001082_RS38175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38175;old_locus_tag=CFSAN001082_14511
NZ_APAH01000283.1	Protein Homology	CDS	937	1392	.	+	0	ID=cds-WP_023254504.1;Parent=gene-CFSAN001082_RS38175;Dbxref=GenBank:WP_023254504.1;Name=WP_023254504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461590.1;locus_tag=CFSAN001082_RS38175;product=DUF4385 domain-containing protein;protein_id=WP_023254504.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	1496	2797	.	+	.	ID=gene-CFSAN001082_RS38180;Name=CFSAN001082_RS38180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38180;old_locus_tag=CFSAN001082_14516
NZ_APAH01000283.1	Protein Homology	CDS	1496	2797	.	+	0	ID=cds-WP_000807814.1;Parent=gene-CFSAN001082_RS38180;Dbxref=GenBank:WP_000807814.1;Name=WP_000807814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461589.1;locus_tag=CFSAN001082_RS38180;product=MFS transporter;protein_id=WP_000807814.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	2794	3117	.	-	.	ID=gene-CFSAN001082_RS38185;Name=CFSAN001082_RS38185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38185;old_locus_tag=CFSAN001082_14521
NZ_APAH01000283.1	Protein Homology	CDS	2794	3117	.	-	0	ID=cds-WP_023254505.1;Parent=gene-CFSAN001082_RS38185;Dbxref=GenBank:WP_023254505.1;Name=WP_023254505.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461588.1;locus_tag=CFSAN001082_RS38185;product=YfiM family lipoprotein;protein_id=WP_023254505.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	3162	4517	.	-	.	ID=gene-CFSAN001082_RS38190;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38190;old_locus_tag=CFSAN001082_14526
NZ_APAH01000283.1	Protein Homology	CDS	3162	4517	.	-	0	ID=cds-WP_000949286.1;Parent=gene-CFSAN001082_RS38190;Dbxref=GenBank:WP_000949286.1;Name=WP_000949286.1;Ontology_term=GO:0032049,GO:0008444;gbkey=CDS;gene=pssA;go_function=CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity|0008444||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121216.1;locus_tag=CFSAN001082_RS38190;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=WP_000949286.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	4632	7292	.	-	.	ID=gene-CFSAN001082_RS38195;Name=pat;gbkey=Gene;gene=pat;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38195;old_locus_tag=CFSAN001082_14531
NZ_APAH01000283.1	Protein Homology	CDS	4632	7292	.	-	0	ID=cds-WP_000082643.1;Parent=gene-CFSAN001082_RS38195;Dbxref=GenBank:WP_000082643.1;Name=WP_000082643.1;gbkey=CDS;gene=pat;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461586.1;locus_tag=CFSAN001082_RS38195;product=protein lysine acetyltransferase;protein_id=WP_000082643.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	7346	8026	.	-	.	ID=gene-CFSAN001082_RS38200;Name=tapT;gbkey=Gene;gene=tapT;gene_biotype=protein_coding;gene_synonym=tuaA,yfiP;locus_tag=CFSAN001082_RS38200;old_locus_tag=CFSAN001082_14536
NZ_APAH01000283.1	Protein Homology	CDS	7346	8026	.	-	0	ID=cds-WP_000183642.1;Parent=gene-CFSAN001082_RS38200;Dbxref=GenBank:WP_000183642.1;Name=WP_000183642.1;gbkey=CDS;gene=tapT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461585.1;locus_tag=CFSAN001082_RS38200;product=tRNA-uridine aminocarboxypropyltransferase;protein_id=WP_000183642.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	8099	8518	.	-	.	ID=gene-CFSAN001082_RS38205;Name=trxC;gbkey=Gene;gene=trxC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38205;old_locus_tag=CFSAN001082_14541
NZ_APAH01000283.1	Protein Homology	CDS	8099	8518	.	-	0	ID=cds-WP_001098732.1;Parent=gene-CFSAN001082_RS38205;Dbxref=GenBank:WP_001098732.1;Name=WP_001098732.1;Ontology_term=GO:0006662,GO:0015035;gbkey=CDS;gene=trxC;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=glycerol ether metabolic process|0006662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461584.1;locus_tag=CFSAN001082_RS38205;product=thioredoxin TrxC;protein_id=WP_001098732.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	8722	9759	.	+	.	ID=gene-CFSAN001082_RS38210;Name=CFSAN001082_RS38210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38210;old_locus_tag=CFSAN001082_14546
NZ_APAH01000283.1	Protein Homology	CDS	8722	9759	.	+	0	ID=cds-WP_000997370.1;Parent=gene-CFSAN001082_RS38210;Dbxref=GenBank:WP_000997370.1;Name=WP_000997370.1;Ontology_term=GO:0006396,GO:0003723,GO:0008173;gbkey=CDS;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461583.1;locus_tag=CFSAN001082_RS38210;product=tRNA/rRNA methyltransferase;protein_id=WP_000997370.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	9875	10564	.	-	.	ID=gene-CFSAN001082_RS38215;Name=ung;gbkey=Gene;gene=ung;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38215;old_locus_tag=CFSAN001082_14551
NZ_APAH01000283.1	Protein Homology	CDS	9875	10564	.	-	0	ID=cds-WP_000179978.1;Parent=gene-CFSAN001082_RS38215;Dbxref=GenBank:WP_000179978.1;Name=WP_000179978.1;Ontology_term=GO:0006284,GO:0004844,GO:0016799;gbkey=CDS;gene=ung;go_function=uracil DNA N-glycosylase activity|0004844||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461582.1;locus_tag=CFSAN001082_RS38215;product=uracil-DNA glycosylase;protein_id=WP_000179978.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	10883	11266	.	+	.	ID=gene-CFSAN001082_RS38220;Name=grcA;gbkey=Gene;gene=grcA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38220;old_locus_tag=CFSAN001082_14556
NZ_APAH01000283.1	Protein Homology	CDS	10883	11266	.	+	0	ID=cds-WP_000627811.1;Parent=gene-CFSAN001082_RS38220;Dbxref=GenBank:WP_000627811.1;Name=WP_000627811.1;Ontology_term=GO:0003824;gbkey=CDS;gene=grcA;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007728348.1;locus_tag=CFSAN001082_RS38220;product=autonomous glycyl radical cofactor GrcA;protein_id=WP_000627811.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	11328	11915	.	-	.	ID=gene-CFSAN001082_RS38225;Name=eamB;gbkey=Gene;gene=eamB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38225;old_locus_tag=CFSAN001082_14561
NZ_APAH01000283.1	Protein Homology	CDS	11328	11915	.	-	0	ID=cds-WP_023194660.1;Parent=gene-CFSAN001082_RS38225;Dbxref=GenBank:WP_023194660.1;Name=WP_023194660.1;gbkey=CDS;gene=eamB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461580.1;locus_tag=CFSAN001082_RS38225;product=cysteine/O-acetylserine transporter;protein_id=WP_023194660.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	12018	12917	.	+	.	ID=gene-CFSAN001082_RS38230;Name=CFSAN001082_RS38230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38230;old_locus_tag=CFSAN001082_14566
NZ_APAH01000283.1	Protein Homology	CDS	12018	12917	.	+	0	ID=cds-WP_023194659.1;Parent=gene-CFSAN001082_RS38230;Dbxref=GenBank:WP_023194659.1;Name=WP_023194659.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461579.1;locus_tag=CFSAN001082_RS38230;product=LysR family transcriptional regulator;protein_id=WP_023194659.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	12935	14269	.	-	.	ID=gene-CFSAN001082_RS38235;Name=srmB;gbkey=Gene;gene=srmB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38235;old_locus_tag=CFSAN001082_14571
NZ_APAH01000283.1	Protein Homology	CDS	12935	14269	.	-	0	ID=cds-WP_000219174.1;Parent=gene-CFSAN001082_RS38235;Dbxref=GenBank:WP_000219174.1;Name=WP_000219174.1;Ontology_term=GO:0000027,GO:0003724;gbkey=CDS;gene=srmB;go_function=RNA helicase activity|0003724||IEA;go_process=ribosomal large subunit assembly|0000027||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461578.1;locus_tag=CFSAN001082_RS38235;product=ATP-dependent RNA helicase SrmB;protein_id=WP_000219174.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	14399	15136	.	+	.	ID=gene-CFSAN001082_RS38240;Name=trmN;gbkey=Gene;gene=trmN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38240;old_locus_tag=CFSAN001082_14576
NZ_APAH01000283.1	Protein Homology	CDS	14399	15136	.	+	0	ID=cds-WP_000083345.1;Parent=gene-CFSAN001082_RS38240;Dbxref=GenBank:WP_000083345.1;Name=WP_000083345.1;Ontology_term=GO:0030488,GO:0003676,GO:0016430;gbkey=CDS;gene=trmN;go_function=nucleic acid binding|0003676||IEA,tRNA (adenine-N6)-methyltransferase activity|0016430||IEA;go_process=tRNA methylation|0030488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461577.1;locus_tag=CFSAN001082_RS38240;product=tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN;protein_id=WP_000083345.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	15121	16743	.	-	.	ID=gene-CFSAN001082_RS38245;Name=nadB;gbkey=Gene;gene=nadB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38245;old_locus_tag=CFSAN001082_14581
NZ_APAH01000283.1	Protein Homology	CDS	15121	16743	.	-	0	ID=cds-WP_023254506.1;Parent=gene-CFSAN001082_RS38245;Dbxref=GenBank:WP_023254506.1;Name=WP_023254506.1;Ontology_term=GO:0009435,GO:0008734;gbkey=CDS;gene=nadB;go_function=L-aspartate oxidase activity|0008734||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461576.1;locus_tag=CFSAN001082_RS38245;product=L-aspartate oxidase;protein_id=WP_023254506.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	17007	17171	.	+	.	ID=gene-CFSAN001082_RS48325;Name=rseD;gbkey=Gene;gene=rseD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48325
NZ_APAH01000283.1	Protein Homology	CDS	17007	17171	.	+	0	ID=cds-WP_014344135.1;Parent=gene-CFSAN001082_RS48325;Dbxref=GenBank:WP_014344135.1;Name=WP_014344135.1;gbkey=CDS;gene=rseD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014344135.1;locus_tag=CFSAN001082_RS48325;product=rpoE leader peptide RseD;protein_id=WP_014344135.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	17168	17743	.	+	.	ID=gene-CFSAN001082_RS38250;Name=rpoE;gbkey=Gene;gene=rpoE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38250;old_locus_tag=CFSAN001082_14586
NZ_APAH01000283.1	Protein Homology	CDS	17168	17743	.	+	0	ID=cds-WP_000003307.1;Parent=gene-CFSAN001082_RS38250;Dbxref=GenBank:WP_000003307.1;Name=WP_000003307.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoE;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005070454.1;locus_tag=CFSAN001082_RS38250;product=RNA polymerase sigma factor RpoE;protein_id=WP_000003307.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	17775	18425	.	+	.	ID=gene-CFSAN001082_RS38255;Name=rseA;gbkey=Gene;gene=rseA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38255;old_locus_tag=CFSAN001082_14591
NZ_APAH01000283.1	Protein Homology	CDS	17775	18425	.	+	0	ID=cds-WP_001168374.1;Parent=gene-CFSAN001082_RS38255;Dbxref=GenBank:WP_001168374.1;Name=WP_001168374.1;Ontology_term=GO:0016989;gbkey=CDS;gene=rseA;go_function=sigma factor antagonist activity|0016989||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461574.1;locus_tag=CFSAN001082_RS38255;product=anti-sigma-E factor RseA;protein_id=WP_001168374.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	18425	19381	.	+	.	ID=gene-CFSAN001082_RS38260;Name=rseB;gbkey=Gene;gene=rseB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38260;old_locus_tag=CFSAN001082_14596
NZ_APAH01000283.1	Protein Homology	CDS	18425	19381	.	+	0	ID=cds-WP_000812021.1;Parent=gene-CFSAN001082_RS38260;Dbxref=GenBank:WP_000812021.1;Name=WP_000812021.1;gbkey=CDS;gene=rseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461573.1;locus_tag=CFSAN001082_RS38260;product=sigma-E factor regulatory protein RseB;protein_id=WP_000812021.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	19378	19857	.	+	.	ID=gene-CFSAN001082_RS38265;Name=rseC;gbkey=Gene;gene=rseC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38265;old_locus_tag=CFSAN001082_14601
NZ_APAH01000283.1	Protein Homology	CDS	19378	19857	.	+	0	ID=cds-WP_023254507.1;Parent=gene-CFSAN001082_RS38265;Dbxref=GenBank:WP_023254507.1;Name=WP_023254507.1;gbkey=CDS;gene=rseC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461572.1;locus_tag=CFSAN001082_RS38265;product=SoxR-reducing system protein RseC;protein_id=WP_023254507.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	20116	21915	.	+	.	ID=gene-CFSAN001082_RS38270;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38270;old_locus_tag=CFSAN001082_14606
NZ_APAH01000283.1	Protein Homology	CDS	20116	21915	.	+	0	ID=cds-WP_000790154.1;Parent=gene-CFSAN001082_RS38270;Dbxref=GenBank:WP_000790154.1;Name=WP_000790154.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=lepA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461518.1;locus_tag=CFSAN001082_RS38270;product=translation elongation factor 4;protein_id=WP_000790154.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	21932	22906	.	+	.	ID=gene-CFSAN001082_RS38275;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38275;old_locus_tag=CFSAN001082_14611
NZ_APAH01000283.1	Protein Homology	CDS	21932	22906	.	+	0	ID=cds-WP_000002559.1;Parent=gene-CFSAN001082_RS38275;Dbxref=GenBank:WP_000002559.1;Name=WP_000002559.1;Ontology_term=GO:0006465,GO:0004252;gbkey=CDS;gene=lepB;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461517.1;locus_tag=CFSAN001082_RS38275;product=signal peptidase I;protein_id=WP_000002559.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	23180	23860	.	+	.	ID=gene-CFSAN001082_RS38280;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38280;old_locus_tag=CFSAN001082_14616
NZ_APAH01000283.1	Protein Homology	CDS	23180	23860	.	+	0	ID=cds-WP_001068341.1;Parent=gene-CFSAN001082_RS38280;Dbxref=GenBank:WP_001068341.1;Name=WP_001068341.1;Ontology_term=GO:0006364,GO:0006396,GO:0003723,GO:0004525;gbkey=CDS;gene=rnc;go_function=RNA binding|0003723||IEA,ribonuclease III activity|0004525||IEA;go_process=rRNA processing|0006364||IEA,RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015960048.1;locus_tag=CFSAN001082_RS38280;product=ribonuclease III;protein_id=WP_001068341.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	23857	24762	.	+	.	ID=gene-CFSAN001082_RS38285;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38285;old_locus_tag=CFSAN001082_14621
NZ_APAH01000283.1	Protein Homology	CDS	23857	24762	.	+	0	ID=cds-WP_000102230.1;Parent=gene-CFSAN001082_RS38285;Dbxref=GenBank:WP_000102230.1;Name=WP_000102230.1;Ontology_term=GO:0003723,GO:0005525;gbkey=CDS;gene=era;go_function=RNA binding|0003723||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461515.1;locus_tag=CFSAN001082_RS38285;product=GTPase Era;protein_id=WP_000102230.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	24774	25502	.	+	.	ID=gene-CFSAN001082_RS38290;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38290;old_locus_tag=CFSAN001082_14626
NZ_APAH01000283.1	Protein Homology	CDS	24774	25502	.	+	0	ID=cds-WP_000399380.1;Parent=gene-CFSAN001082_RS38290;Dbxref=GenBank:WP_000399380.1;Name=WP_000399380.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677;gbkey=CDS;gene=recO;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461514.1;locus_tag=CFSAN001082_RS38290;product=DNA repair protein RecO;protein_id=WP_000399380.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	25514	26245	.	+	.	ID=gene-CFSAN001082_RS38295;Name=pdxJ;gbkey=Gene;gene=pdxJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38295;old_locus_tag=CFSAN001082_14631
NZ_APAH01000283.1	Protein Homology	CDS	25514	26245	.	+	0	ID=cds-WP_000818969.1;Parent=gene-CFSAN001082_RS38295;Dbxref=GenBank:WP_000818969.1;Name=WP_000818969.1;Ontology_term=GO:0008615,GO:0033856;gbkey=CDS;gene=pdxJ;go_function=pyridoxine 5'-phosphate synthase activity|0033856||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461513.1;locus_tag=CFSAN001082_RS38295;product=pyridoxine 5'-phosphate synthase;protein_id=WP_000818969.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	26245	26625	.	+	.	ID=gene-CFSAN001082_RS38300;Name=acpS;gbkey=Gene;gene=acpS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38300;old_locus_tag=CFSAN001082_14636
NZ_APAH01000283.1	Protein Homology	CDS	26245	26625	.	+	0	ID=cds-WP_000986043.1;Parent=gene-CFSAN001082_RS38300;Dbxref=GenBank:WP_000986043.1;Name=WP_000986043.1;Ontology_term=GO:0008610,GO:0008897;gbkey=CDS;gene=acpS;go_function=holo-[acyl-carrier-protein] synthase activity|0008897||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461512.1;locus_tag=CFSAN001082_RS38300;product=holo-ACP synthase;protein_id=WP_000986043.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	26737	26997	.	-	.	ID=gene-CFSAN001082_RS38305;Name=CFSAN001082_RS38305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38305;old_locus_tag=CFSAN001082_14641
NZ_APAH01000283.1	Protein Homology	CDS	26737	26997	.	-	0	ID=cds-WP_001196291.1;Parent=gene-CFSAN001082_RS38305;Dbxref=GenBank:WP_001196291.1;Name=WP_001196291.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461511.1;locus_tag=CFSAN001082_RS38305;product=YfhL family 4Fe-4S dicluster ferredoxin;protein_id=WP_001196291.1;transl_table=11
NZ_APAH01000283.1	RefSeq	gene	27035	27809	.	-	.	ID=gene-CFSAN001082_RS38310;Name=CFSAN001082_RS38310;end_range=27809,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38310;old_locus_tag=CFSAN001082_14646;partial=true
NZ_APAH01000283.1	Protein Homology	CDS	27035	27809	.	-	1	ID=cds-WP_023254508.1;Parent=gene-CFSAN001082_RS38310;Dbxref=GenBank:WP_023254508.1;Name=WP_023254508.1;end_range=27809,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461510.1;locus_tag=CFSAN001082_RS38310;partial=true;product=LysR family transcriptional regulator substrate-binding protein;protein_id=WP_023254508.1;transl_table=11
##sequence-region NZ_APAH01000284.1 1 2339
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000284.1	RefSeq	region	1	2339	.	+	.	ID=NZ_APAH01000284.1:1..2339;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000284.1	RefSeq	gene	345	1613	.	-	.	ID=gene-CFSAN001082_RS38315;Name=CFSAN001082_RS38315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38315;old_locus_tag=CFSAN001082_14655
NZ_APAH01000284.1	Protein Homology	CDS	345	1613	.	-	0	ID=cds-WP_023254509.1;Parent=gene-CFSAN001082_RS38315;Dbxref=GenBank:WP_023254509.1;Name=WP_023254509.1;Ontology_term=GO:0006974,GO:0009432,GO:0019985,GO:0042276,GO:0003684,GO:0003887;gbkey=CDS;go_function=damaged DNA binding|0003684||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA damage response|0006974||IEA,SOS response|0009432||IEA,translesion synthesis|0019985||IEA,error-prone translesion synthesis|0042276||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460948.1;locus_tag=CFSAN001082_RS38315;product=Y-family DNA polymerase;protein_id=WP_023254509.1;transl_table=11
NZ_APAH01000284.1	RefSeq	gene	1616	2035	.	-	.	ID=gene-CFSAN001082_RS38320;Name=CFSAN001082_RS38320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38320;old_locus_tag=CFSAN001082_14660
NZ_APAH01000284.1	Protein Homology	CDS	1616	2035	.	-	0	ID=cds-WP_000394196.1;Parent=gene-CFSAN001082_RS38320;Dbxref=GenBank:WP_000394196.1;Name=WP_000394196.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460949.1;locus_tag=CFSAN001082_RS38320;product=translesion error-prone DNA polymerase V autoproteolytic subunit;protein_id=WP_000394196.1;transl_table=11
##sequence-region NZ_APAH01000285.1 1 9816
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000285.1	RefSeq	region	1	9816	.	+	.	ID=NZ_APAH01000285.1:1..9816;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000285.1	RefSeq	gene	1	1606	.	+	.	ID=gene-CFSAN001082_RS0123675;Name=CFSAN001082_RS0123675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123675;old_locus_tag=CFSAN001082_14670;partial=true;start_range=.,1
NZ_APAH01000285.1	Protein Homology	CDS	1	1606	.	+	1	ID=cds-WP_024150307.1;Parent=gene-CFSAN001082_RS0123675;Dbxref=GenBank:WP_024150307.1;Name=WP_024150307.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000669888.1;locus_tag=CFSAN001082_RS0123675;partial=true;product=aryl-sulfate sulfotransferase;protein_id=WP_024150307.1;start_range=.,1;transl_table=11
NZ_APAH01000285.1	RefSeq	gene	1803	2966	.	-	.	ID=gene-CFSAN001082_RS38330;Name=fadA;gbkey=Gene;gene=fadA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38330;old_locus_tag=CFSAN001082_14675
NZ_APAH01000285.1	Protein Homology	CDS	1803	2966	.	-	0	ID=cds-WP_000438778.1;Parent=gene-CFSAN001082_RS38330;Dbxref=GenBank:WP_000438778.1;Name=WP_000438778.1;Ontology_term=GO:0006631,GO:0016042,GO:0003988,GO:0005737;gbkey=CDS;gene=fadA;go_component=cytoplasm|0005737||IEA;go_function=acetyl-CoA C-acyltransferase activity|0003988||IEA;go_process=fatty acid metabolic process|0006631||IEA,lipid catabolic process|0016042||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462867.1;locus_tag=CFSAN001082_RS38330;product=acetyl-CoA C-acyltransferase FadA;protein_id=WP_000438778.1;transl_table=11
NZ_APAH01000285.1	RefSeq	gene	2976	5165	.	-	.	ID=gene-CFSAN001082_RS38335;Name=fadB;gbkey=Gene;gene=fadB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38335;old_locus_tag=CFSAN001082_14680
NZ_APAH01000285.1	Protein Homology	CDS	2976	5165	.	-	0	ID=cds-WP_000966001.1;Parent=gene-CFSAN001082_RS38335;Dbxref=GenBank:WP_000966001.1;Name=WP_000966001.1;Ontology_term=GO:0009062,GO:0003857,GO:0004165,GO:0004300,GO:0008692,GO:0036125;gbkey=CDS;gene=fadB;go_component=fatty acid beta-oxidation multienzyme complex|0036125||IEA;go_function=3-hydroxyacyl-CoA dehydrogenase activity|0003857||IEA,delta(3)-delta(2)-enoyl-CoA isomerase activity|0004165||IEA,enoyl-CoA hydratase activity|0004300||IEA,3-hydroxybutyryl-CoA epimerase activity|0008692||IEA;go_process=fatty acid catabolic process|0009062||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462868.1;locus_tag=CFSAN001082_RS38335;product=fatty acid oxidation complex subunit alpha FadB;protein_id=WP_000966001.1;transl_table=11
NZ_APAH01000285.1	RefSeq	gene	5355	6686	.	+	.	ID=gene-CFSAN001082_RS38340;Name=pepQ;gbkey=Gene;gene=pepQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38340;old_locus_tag=CFSAN001082_14685
NZ_APAH01000285.1	Protein Homology	CDS	5355	6686	.	+	0	ID=cds-WP_000444529.1;Parent=gene-CFSAN001082_RS38340;Dbxref=GenBank:WP_000444529.1;Name=WP_000444529.1;gbkey=CDS;gene=pepQ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020801804.1;locus_tag=CFSAN001082_RS38340;product=Xaa-Pro dipeptidase;protein_id=WP_000444529.1;transl_table=11
NZ_APAH01000285.1	RefSeq	gene	6686	7300	.	+	.	ID=gene-CFSAN001082_RS38345;Name=CFSAN001082_RS38345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38345;old_locus_tag=CFSAN001082_14690
NZ_APAH01000285.1	Protein Homology	CDS	6686	7300	.	+	0	ID=cds-WP_000378897.1;Parent=gene-CFSAN001082_RS38345;Dbxref=GenBank:WP_000378897.1;Name=WP_000378897.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462870.1;locus_tag=CFSAN001082_RS38345;product=IMPACT family protein;protein_id=WP_000378897.1;transl_table=11
NZ_APAH01000285.1	RefSeq	gene	7339	8790	.	+	.	ID=gene-CFSAN001082_RS38350;Name=trkH;gbkey=Gene;gene=trkH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38350;old_locus_tag=CFSAN001082_14695
NZ_APAH01000285.1	Protein Homology	CDS	7339	8790	.	+	0	ID=cds-WP_000545688.1;Parent=gene-CFSAN001082_RS38350;Dbxref=GenBank:WP_000545688.1;Name=WP_000545688.1;gbkey=CDS;gene=trkH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004146450.1;locus_tag=CFSAN001082_RS38350;product=Trk system potassium transporter TrkH;protein_id=WP_000545688.1;transl_table=11
NZ_APAH01000285.1	RefSeq	gene	8802	9347	.	+	.	ID=gene-CFSAN001082_RS38355;Name=hemG;gbkey=Gene;gene=hemG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38355;old_locus_tag=CFSAN001082_14700
NZ_APAH01000285.1	Protein Homology	CDS	8802	9347	.	+	0	ID=cds-WP_000853982.1;Parent=gene-CFSAN001082_RS38355;Dbxref=GenBank:WP_000853982.1;Name=WP_000853982.1;gbkey=CDS;gene=hemG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462872.1;locus_tag=CFSAN001082_RS38355;product=menaquinone-dependent protoporphyrinogen IX dehydrogenase;protein_id=WP_000853982.1;transl_table=11
NZ_APAH01000285.1	RefSeq	gene	9725	9816	.	+	.	ID=gene-CFSAN001082_RS38360;Name=CFSAN001082_RS38360;end_range=9816,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS38360;old_locus_tag=CFSAN001082_r14707;partial=true
NZ_APAH01000285.1	cmsearch	rRNA	9725	9816	.	+	.	ID=rna-CFSAN001082_RS38360;Parent=gene-CFSAN001082_RS38360;Dbxref=RFAM:RF00177;end_range=9816,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS38360;partial=true;product=16S ribosomal RNA
NZ_APAH01000285.1	cmsearch	exon	9725	9816	.	+	.	ID=exon-CFSAN001082_RS38360-1;Parent=rna-CFSAN001082_RS38360;Dbxref=RFAM:RF00177;end_range=9816,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS38360;partial=true;product=16S ribosomal RNA
##sequence-region NZ_APAH01000286.1 1 234
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000286.1	RefSeq	region	1	234	.	+	.	ID=NZ_APAH01000286.1:1..234;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000286.1	RefSeq	pseudogene	1	234	.	-	.	ID=gene-CFSAN001082_RS38365;Name=CFSAN001082_RS38365;end_range=234,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS38365;old_locus_tag=CFSAN001082_14707;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000286.1	Protein Homology	CDS	1	234	.	-	1	ID=cds-CFSAN001082_RS38365;Parent=gene-CFSAN001082_RS38365;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=234,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463122.1;locus_tag=CFSAN001082_RS38365;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000287.1 1 1673
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000287.1	RefSeq	region	1	1673	.	+	.	ID=NZ_APAH01000287.1:1..1673;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000287.1	RefSeq	pseudogene	1	311	.	-	.	ID=gene-CFSAN001082_RS38370;Name=ssaT;gbkey=Gene;gene=ssaT;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS38370;old_locus_tag=CFSAN001082_14712;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000287.1	Protein Homology	CDS	1	311	.	-	0	ID=cds-CFSAN001082_RS38370;Parent=gene-CFSAN001082_RS38370;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=ssaT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460386.1;locus_tag=CFSAN001082_RS38370;partial=true;product=SPI-2 type III secretion system apparatus protein SsaT;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000287.1	RefSeq	gene	312	578	.	-	.	ID=gene-CFSAN001082_RS38375;Name=ssas;gbkey=Gene;gene=ssas;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38375;old_locus_tag=CFSAN001082_14717
NZ_APAH01000287.1	Protein Homology	CDS	312	578	.	-	0	ID=cds-WP_000999982.1;Parent=gene-CFSAN001082_RS38375;Dbxref=GenBank:WP_000999982.1;Name=WP_000999982.1;gbkey=CDS;gene=ssas;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460385.1;locus_tag=CFSAN001082_RS38375;product=SPI-2 type III secretion system apparatus protein SsaS;protein_id=WP_000999982.1;transl_table=11
NZ_APAH01000287.1	RefSeq	gene	575	1222	.	-	.	ID=gene-CFSAN001082_RS38380;Name=ssaR;gbkey=Gene;gene=ssaR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38380;old_locus_tag=CFSAN001082_14722
NZ_APAH01000287.1	Protein Homology	CDS	575	1222	.	-	0	ID=cds-WP_000056367.1;Parent=gene-CFSAN001082_RS38380;Dbxref=GenBank:WP_000056367.1;Name=WP_000056367.1;gbkey=CDS;gene=ssaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460384.1;locus_tag=CFSAN001082_RS38380;product=SPI-2 type III secretion system export apparatus protein SsaR;protein_id=WP_000056367.1;transl_table=11
NZ_APAH01000287.1	RefSeq	pseudogene	1290	1673	.	-	.	ID=gene-CFSAN001082_RS38385;Name=ssaQ;end_range=1673,.;gbkey=Gene;gene=ssaQ;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS38385;old_locus_tag=CFSAN001082_14727;partial=true;pseudo=true
NZ_APAH01000287.1	Protein Homology	CDS	1290	1673	.	-	0	ID=cds-CFSAN001082_RS38385;Parent=gene-CFSAN001082_RS38385;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=1673,.;gbkey=CDS;gene=ssaQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460383.1;locus_tag=CFSAN001082_RS38385;partial=true;product=SPI-2 type III secretion system cytoplasmic ring protein SsaQ;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000288.1 1 23639
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000288.1	RefSeq	region	1	23639	.	+	.	ID=NZ_APAH01000288.1:1..23639;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000288.1	RefSeq	gene	39	746	.	+	.	ID=gene-CFSAN001082_RS38390;Name=CFSAN001082_RS38390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38390;old_locus_tag=CFSAN001082_14732
NZ_APAH01000288.1	Protein Homology	CDS	39	746	.	+	0	ID=cds-WP_023254514.1;Parent=gene-CFSAN001082_RS38390;Dbxref=GenBank:WP_023254514.1;Name=WP_023254514.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748430.1;locus_tag=CFSAN001082_RS38390;product=EAL domain-containing protein;protein_id=WP_023254514.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	762	1568	.	-	.	ID=gene-CFSAN001082_RS38395;Name=sapF;gbkey=Gene;gene=sapF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38395;old_locus_tag=CFSAN001082_14737
NZ_APAH01000288.1	Protein Homology	CDS	762	1568	.	-	0	ID=cds-WP_000230462.1;Parent=gene-CFSAN001082_RS38395;Dbxref=GenBank:WP_000230462.1;Name=WP_000230462.1;gbkey=CDS;gene=sapF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460654.1;locus_tag=CFSAN001082_RS38395;product=peptide ABC transporter ATP-binding protein SapF;protein_id=WP_000230462.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	1570	2562	.	-	.	ID=gene-CFSAN001082_RS38400;Name=sapD;gbkey=Gene;gene=sapD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38400;old_locus_tag=CFSAN001082_14742
NZ_APAH01000288.1	Protein Homology	CDS	1570	2562	.	-	0	ID=cds-WP_023254515.1;Parent=gene-CFSAN001082_RS38400;Dbxref=GenBank:WP_023254515.1;Name=WP_023254515.1;gbkey=CDS;gene=sapD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460653.1;locus_tag=CFSAN001082_RS38400;product=peptide ABC transporter ATP-binding protein SapD;protein_id=WP_023254515.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	2562	3452	.	-	.	ID=gene-CFSAN001082_RS38405;Name=sapC;gbkey=Gene;gene=sapC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38405;old_locus_tag=CFSAN001082_14747
NZ_APAH01000288.1	Protein Homology	CDS	2562	3452	.	-	0	ID=cds-WP_001146150.1;Parent=gene-CFSAN001082_RS38405;Dbxref=GenBank:WP_001146150.1;Name=WP_001146150.1;gbkey=CDS;gene=sapC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460652.1;locus_tag=CFSAN001082_RS38405;product=peptide ABC transporter permease SapC;protein_id=WP_001146150.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	3439	4404	.	-	.	ID=gene-CFSAN001082_RS38410;Name=sapB;gbkey=Gene;gene=sapB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38410;old_locus_tag=CFSAN001082_14752
NZ_APAH01000288.1	Protein Homology	CDS	3439	4404	.	-	0	ID=cds-WP_023225065.1;Parent=gene-CFSAN001082_RS38410;Dbxref=GenBank:WP_023225065.1;Name=WP_023225065.1;gbkey=CDS;gene=sapB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126482.1;locus_tag=CFSAN001082_RS38410;product=peptide ABC transporter permease SapB;protein_id=WP_023225065.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	4401	6050	.	-	.	ID=gene-CFSAN001082_RS38415;Name=sapA;gbkey=Gene;gene=sapA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38415;old_locus_tag=CFSAN001082_14757
NZ_APAH01000288.1	Protein Homology	CDS	4401	6050	.	-	0	ID=cds-WP_001241629.1;Parent=gene-CFSAN001082_RS38415;Dbxref=GenBank:WP_001241629.1;Name=WP_001241629.1;gbkey=CDS;gene=sapA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460650.1;locus_tag=CFSAN001082_RS38415;product=peptide ABC transporter substrate-binding protein SapA;protein_id=WP_001241629.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	6162	7142	.	-	.	ID=gene-CFSAN001082_RS38420;Name=pspF;gbkey=Gene;gene=pspF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38420;old_locus_tag=CFSAN001082_14762
NZ_APAH01000288.1	Protein Homology	CDS	6162	7142	.	-	0	ID=cds-WP_023254516.1;Parent=gene-CFSAN001082_RS38420;Dbxref=GenBank:WP_023254516.1;Name=WP_023254516.1;gbkey=CDS;gene=pspF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460649.1;locus_tag=CFSAN001082_RS38420;product=phage shock protein operon transcriptional activator;protein_id=WP_023254516.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	7313	7981	.	+	.	ID=gene-CFSAN001082_RS38425;Name=pspA;gbkey=Gene;gene=pspA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38425;old_locus_tag=CFSAN001082_14767
NZ_APAH01000288.1	Protein Homology	CDS	7313	7981	.	+	0	ID=cds-WP_000511000.1;Parent=gene-CFSAN001082_RS38425;Dbxref=GenBank:WP_000511000.1;Name=WP_000511000.1;gbkey=CDS;gene=pspA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460648.1;locus_tag=CFSAN001082_RS38425;product=phage shock protein PspA;protein_id=WP_000511000.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	8041	8265	.	+	.	ID=gene-CFSAN001082_RS38430;Name=pspB;gbkey=Gene;gene=pspB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38430;old_locus_tag=CFSAN001082_14772
NZ_APAH01000288.1	Protein Homology	CDS	8041	8265	.	+	0	ID=cds-WP_001274953.1;Parent=gene-CFSAN001082_RS38430;Dbxref=GenBank:WP_001274953.1;Name=WP_001274953.1;Ontology_term=GO:0009271;gbkey=CDS;gene=pspB;go_process=phage shock|0009271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460647.1;locus_tag=CFSAN001082_RS38430;product=envelope stress response membrane protein PspB;protein_id=WP_001274953.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	8265	8624	.	+	.	ID=gene-CFSAN001082_RS38435;Name=pspC;gbkey=Gene;gene=pspC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38435;old_locus_tag=CFSAN001082_14777
NZ_APAH01000288.1	Protein Homology	CDS	8265	8624	.	+	0	ID=cds-WP_023254517.1;Parent=gene-CFSAN001082_RS38435;Dbxref=GenBank:WP_023254517.1;Name=WP_023254517.1;gbkey=CDS;gene=pspC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460646.1;locus_tag=CFSAN001082_RS38435;product=envelope stress response membrane protein PspC;protein_id=WP_023254517.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	8647	8865	.	+	.	ID=gene-CFSAN001082_RS38440;Name=pspD;gbkey=Gene;gene=pspD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38440;old_locus_tag=CFSAN001082_14782
NZ_APAH01000288.1	Protein Homology	CDS	8647	8865	.	+	0	ID=cds-WP_001026494.1;Parent=gene-CFSAN001082_RS38440;Dbxref=GenBank:WP_001026494.1;Name=WP_001026494.1;gbkey=CDS;gene=pspD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460645.1;locus_tag=CFSAN001082_RS38440;product=phage shock protein PspD;protein_id=WP_001026494.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	8941	9255	.	+	.	ID=gene-CFSAN001082_RS38445;Name=pspE;gbkey=Gene;gene=pspE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38445;old_locus_tag=CFSAN001082_14787
NZ_APAH01000288.1	Protein Homology	CDS	8941	9255	.	+	0	ID=cds-WP_000913428.1;Parent=gene-CFSAN001082_RS38445;Dbxref=GenBank:WP_000913428.1;Name=WP_000913428.1;gbkey=CDS;gene=pspE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460644.1;locus_tag=CFSAN001082_RS38445;product=thiosulfate sulfurtransferase PspE;protein_id=WP_000913428.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	9404	10801	.	+	.	ID=gene-CFSAN001082_RS38450;Name=CFSAN001082_RS38450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38450;old_locus_tag=CFSAN001082_14792
NZ_APAH01000288.1	Protein Homology	CDS	9404	10801	.	+	0	ID=cds-WP_000825860.1;Parent=gene-CFSAN001082_RS38450;Dbxref=GenBank:WP_000825860.1;Name=WP_000825860.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126510.1;locus_tag=CFSAN001082_RS38450;product=YcjX family protein;protein_id=WP_000825860.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	10798	11859	.	+	.	ID=gene-CFSAN001082_RS38455;Name=CFSAN001082_RS38455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38455;old_locus_tag=CFSAN001082_14797
NZ_APAH01000288.1	Protein Homology	CDS	10798	11859	.	+	0	ID=cds-WP_023254518.1;Parent=gene-CFSAN001082_RS38455;Dbxref=GenBank:WP_023254518.1;Name=WP_023254518.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460642.1;locus_tag=CFSAN001082_RS38455;product=YcjF family protein;protein_id=WP_023254518.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	12007	13548	.	+	.	ID=gene-CFSAN001082_RS38460;Name=tyrR;gbkey=Gene;gene=tyrR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38460;old_locus_tag=CFSAN001082_14802
NZ_APAH01000288.1	Protein Homology	CDS	12007	13548	.	+	0	ID=cds-WP_023254519.1;Parent=gene-CFSAN001082_RS38460;Dbxref=GenBank:WP_023254519.1;Name=WP_023254519.1;Ontology_term=GO:0006355,GO:0008134;gbkey=CDS;gene=tyrR;go_function=transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460641.1;locus_tag=CFSAN001082_RS38460;product=transcriptional regulator TyrR;protein_id=WP_023254519.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	13638	14144	.	-	.	ID=gene-CFSAN001082_RS38465;Name=tpx;gbkey=Gene;gene=tpx;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38465;old_locus_tag=CFSAN001082_14807
NZ_APAH01000288.1	Protein Homology	CDS	13638	14144	.	-	0	ID=cds-WP_000084401.1;Parent=gene-CFSAN001082_RS38465;Dbxref=GenBank:WP_000084401.1;Name=WP_000084401.1;Ontology_term=GO:0008379,GO:0016684;gbkey=CDS;gene=tpx;go_function=thioredoxin peroxidase activity|0008379||IEA,oxidoreductase activity%2C acting on peroxide as acceptor|0016684||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460640.1;locus_tag=CFSAN001082_RS38465;product=thiol peroxidase;protein_id=WP_000084401.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	14260	15225	.	+	.	ID=gene-CFSAN001082_RS38470;Name=ycjG;gbkey=Gene;gene=ycjG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38470;old_locus_tag=CFSAN001082_14812
NZ_APAH01000288.1	Protein Homology	CDS	14260	15225	.	+	0	ID=cds-WP_001258073.1;Parent=gene-CFSAN001082_RS38470;Dbxref=GenBank:WP_001258073.1;Name=WP_001258073.1;Ontology_term=GO:0009063,GO:0016855;gbkey=CDS;gene=ycjG;go_function=racemase and epimerase activity%2C acting on amino acids and derivatives|0016855||IEA;go_process=amino acid catabolic process|0009063||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460639.1;locus_tag=CFSAN001082_RS38470;product=L-Ala-D/L-Glu epimerase;protein_id=WP_001258073.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	15200	15928	.	-	.	ID=gene-CFSAN001082_RS38475;Name=mpaA;gbkey=Gene;gene=mpaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38475;old_locus_tag=CFSAN001082_14817
NZ_APAH01000288.1	Protein Homology	CDS	15200	15928	.	-	0	ID=cds-WP_000219108.1;Parent=gene-CFSAN001082_RS38475;Dbxref=GenBank:WP_000219108.1;Name=WP_000219108.1;Ontology_term=GO:0006508,GO:0004181,GO:0008270;gbkey=CDS;gene=mpaA;go_function=metallocarboxypeptidase activity|0004181||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460638.1;locus_tag=CFSAN001082_RS38475;product=murein tripeptide amidase MpaA;protein_id=WP_000219108.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	16118	17731	.	+	.	ID=gene-CFSAN001082_RS38480;Name=CFSAN001082_RS38480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38480;old_locus_tag=CFSAN001082_14822
NZ_APAH01000288.1	Protein Homology	CDS	16118	17731	.	+	0	ID=cds-WP_023203175.1;Parent=gene-CFSAN001082_RS38480;Dbxref=GenBank:WP_023203175.1;Name=WP_023203175.1;Ontology_term=GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460637.1;locus_tag=CFSAN001082_RS38480;product=peptide ABC transporter substrate-binding protein;protein_id=WP_023203175.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	17828	18757	.	-	.	ID=gene-CFSAN001082_RS38485;Name=CFSAN001082_RS38485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38485;old_locus_tag=CFSAN001082_14827
NZ_APAH01000288.1	Protein Homology	CDS	17828	18757	.	-	0	ID=cds-WP_023254520.1;Parent=gene-CFSAN001082_RS38485;Dbxref=GenBank:WP_023254520.1;Name=WP_023254520.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460636.1;locus_tag=CFSAN001082_RS38485;product=aromatic alcohol reductase;protein_id=WP_023254520.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	18876	19781	.	+	.	ID=gene-CFSAN001082_RS38490;Name=CFSAN001082_RS38490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38490;old_locus_tag=CFSAN001082_14832
NZ_APAH01000288.1	Protein Homology	CDS	18876	19781	.	+	0	ID=cds-WP_023254521.1;Parent=gene-CFSAN001082_RS38490;Dbxref=GenBank:WP_023254521.1;Name=WP_023254521.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460635.1;locus_tag=CFSAN001082_RS38490;product=LysR family transcriptional regulator;protein_id=WP_023254521.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	20057	20926	.	+	.	ID=gene-CFSAN001082_RS38495;Name=CFSAN001082_RS38495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38495;old_locus_tag=CFSAN001082_14837
NZ_APAH01000288.1	Protein Homology	CDS	20057	20926	.	+	0	ID=cds-WP_000456775.1;Parent=gene-CFSAN001082_RS38495;Dbxref=GenBank:WP_000456775.1;Name=WP_000456775.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460634.1;locus_tag=CFSAN001082_RS38495;product=aldo/keto reductase;protein_id=WP_000456775.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	21017	21730	.	-	.	ID=gene-CFSAN001082_RS38500;Name=bdcA;gbkey=Gene;gene=bdcA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38500;old_locus_tag=CFSAN001082_14842
NZ_APAH01000288.1	Protein Homology	CDS	21017	21730	.	-	0	ID=cds-WP_023254522.1;Parent=gene-CFSAN001082_RS38500;Dbxref=GenBank:WP_023254522.1;Name=WP_023254522.1;Ontology_term=GO:0016491;gbkey=CDS;gene=bdcA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460633.1;locus_tag=CFSAN001082_RS38500;product=SDR family oxidoreductase;protein_id=WP_023254522.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	21808	22398	.	+	.	ID=gene-CFSAN001082_RS38505;Name=CFSAN001082_RS38505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38505;old_locus_tag=CFSAN001082_14847
NZ_APAH01000288.1	Protein Homology	CDS	21808	22398	.	+	0	ID=cds-WP_000208473.1;Parent=gene-CFSAN001082_RS38505;Dbxref=GenBank:WP_000208473.1;Name=WP_000208473.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460632.1;locus_tag=CFSAN001082_RS38505;product=TetR/AcrR family transcriptional regulator;protein_id=WP_000208473.1;transl_table=11
NZ_APAH01000288.1	RefSeq	gene	22527	22763	.	+	.	ID=gene-CFSAN001082_RS38510;Name=CFSAN001082_RS38510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38510;old_locus_tag=CFSAN001082_14852
NZ_APAH01000288.1	Protein Homology	CDS	22527	22763	.	+	0	ID=cds-WP_023254523.1;Parent=gene-CFSAN001082_RS38510;Dbxref=GenBank:WP_023254523.1;Name=WP_023254523.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001168019.1;locus_tag=CFSAN001082_RS38510;product=YgdI/YgdR family lipoprotein;protein_id=WP_023254523.1;transl_table=11
NZ_APAH01000288.1	RefSeq	pseudogene	22977	23639	.	-	.	ID=gene-CFSAN001082_RS48935;Name=CFSAN001082_RS48935;end_range=23639,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48935;old_locus_tag=CFSAN001082_14857;partial=true;pseudo=true
NZ_APAH01000288.1	Protein Homology	CDS	22977	23639	.	-	0	ID=cds-CFSAN001082_RS48935;Parent=gene-CFSAN001082_RS48935;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=23639,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448089.1;locus_tag=CFSAN001082_RS48935;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000289.1 1 25204
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000289.1	RefSeq	region	1	25204	.	+	.	ID=NZ_APAH01000289.1:1..25204;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000289.1	RefSeq	gene	68	994	.	+	.	ID=gene-CFSAN001082_RS38520;Name=CFSAN001082_RS38520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38520;old_locus_tag=CFSAN001082_14862
NZ_APAH01000289.1	Protein Homology	CDS	68	994	.	+	0	ID=cds-WP_000381076.1;Parent=gene-CFSAN001082_RS38520;Dbxref=GenBank:WP_000381076.1;Name=WP_000381076.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463256.1;locus_tag=CFSAN001082_RS38520;product=DMT family transporter;protein_id=WP_000381076.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	1044	1679	.	-	.	ID=gene-CFSAN001082_RS38525;Name=CFSAN001082_RS38525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38525;old_locus_tag=CFSAN001082_14867
NZ_APAH01000289.1	Protein Homology	CDS	1044	1679	.	-	0	ID=cds-WP_001119448.1;Parent=gene-CFSAN001082_RS38525;Dbxref=GenBank:WP_001119448.1;Name=WP_001119448.1;Ontology_term=GO:0042834;gbkey=CDS;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463257.1;locus_tag=CFSAN001082_RS38525;product=OapA family protein;protein_id=WP_001119448.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	1899	2519	.	+	.	ID=gene-CFSAN001082_RS38530;Name=fklB;gbkey=Gene;gene=fklB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38530;old_locus_tag=CFSAN001082_14872
NZ_APAH01000289.1	Protein Homology	CDS	1899	2519	.	+	0	ID=cds-WP_000235161.1;Parent=gene-CFSAN001082_RS38530;Dbxref=GenBank:WP_000235161.1;Name=WP_000235161.1;gbkey=CDS;gene=fklB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015742582.1;locus_tag=CFSAN001082_RS38530;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000235161.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	2815	4218	.	+	.	ID=gene-CFSAN001082_RS38535;Name=cycA;gbkey=Gene;gene=cycA;gene_biotype=protein_coding;gene_synonym=dagA;locus_tag=CFSAN001082_RS38535;old_locus_tag=CFSAN001082_14877
NZ_APAH01000289.1	Protein Homology	CDS	2815	4218	.	+	0	ID=cds-WP_000228321.1;Parent=gene-CFSAN001082_RS38535;Dbxref=GenBank:WP_000228321.1;Name=WP_000228321.1;Ontology_term=GO:0006865,GO:0055085,GO:0016020;gbkey=CDS;gene=cycA;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001541380.1;locus_tag=CFSAN001082_RS38535;product=D-serine/D-alanine/glycine transporter;protein_id=WP_000228321.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	4556	5695	.	+	.	ID=gene-CFSAN001082_RS38540;Name=CFSAN001082_RS38540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38540;old_locus_tag=CFSAN001082_14882
NZ_APAH01000289.1	Protein Homology	CDS	4556	5695	.	+	0	ID=cds-WP_023254525.1;Parent=gene-CFSAN001082_RS38540;Dbxref=GenBank:WP_023254525.1;Name=WP_023254525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000155541.1;locus_tag=CFSAN001082_RS38540;product=DKNYY domain-containing protein;protein_id=WP_023254525.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	5710	7098	.	+	.	ID=gene-CFSAN001082_RS38545;Name=CFSAN001082_RS38545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38545;old_locus_tag=CFSAN001082_14887
NZ_APAH01000289.1	Protein Homology	CDS	5710	7098	.	+	0	ID=cds-WP_023254526.1;Parent=gene-CFSAN001082_RS38545;Dbxref=GenBank:WP_023254526.1;Name=WP_023254526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000944334.1;locus_tag=CFSAN001082_RS38545;product=hypothetical protein;protein_id=WP_023254526.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	7165	7827	.	-	.	ID=gene-CFSAN001082_RS38550;Name=ytfE;gbkey=Gene;gene=ytfE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38550;old_locus_tag=CFSAN001082_14892
NZ_APAH01000289.1	Protein Homology	CDS	7165	7827	.	-	0	ID=cds-WP_000331471.1;Parent=gene-CFSAN001082_RS38550;Dbxref=GenBank:WP_000331471.1;Name=WP_000331471.1;gbkey=CDS;gene=ytfE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463260.1;locus_tag=CFSAN001082_RS38550;product=iron-sulfur cluster repair protein YtfE;protein_id=WP_000331471.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	7930	8895	.	-	.	ID=gene-CFSAN001082_RS38555;Name=CFSAN001082_RS38555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38555;old_locus_tag=CFSAN001082_14897
NZ_APAH01000289.1	Protein Homology	CDS	7930	8895	.	-	0	ID=cds-WP_023254527.1;Parent=gene-CFSAN001082_RS38555;Dbxref=GenBank:WP_023254527.1;Name=WP_023254527.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463261.1;locus_tag=CFSAN001082_RS38555;product=DMT family transporter;protein_id=WP_023254527.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	8976	9824	.	-	.	ID=gene-CFSAN001082_RS38560;Name=CFSAN001082_RS38560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38560;old_locus_tag=CFSAN001082_14902
NZ_APAH01000289.1	Protein Homology	CDS	8976	9824	.	-	0	ID=cds-WP_023254528.1;Parent=gene-CFSAN001082_RS38560;Dbxref=GenBank:WP_023254528.1;Name=WP_023254528.1;Ontology_term=GO:0016655;gbkey=CDS;go_function=oxidoreductase activity%2C acting on NAD(P)H%2C quinone or similar compound as acceptor|0016655||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463262.1;locus_tag=CFSAN001082_RS38560;product=SDR family oxidoreductase;protein_id=WP_023254528.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	9912	10298	.	+	.	ID=gene-CFSAN001082_RS38565;Name=CFSAN001082_RS38565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38565;old_locus_tag=CFSAN001082_14907
NZ_APAH01000289.1	Protein Homology	CDS	9912	10298	.	+	0	ID=cds-WP_001201295.1;Parent=gene-CFSAN001082_RS38565;Dbxref=GenBank:WP_001201295.1;Name=WP_001201295.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463263.1;locus_tag=CFSAN001082_RS38565;product=winged helix-turn-helix transcriptional regulator;protein_id=WP_001201295.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	10356	12299	.	-	.	ID=gene-CFSAN001082_RS38570;Name=CFSAN001082_RS38570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38570;old_locus_tag=CFSAN001082_14912
NZ_APAH01000289.1	Protein Homology	CDS	10356	12299	.	-	0	ID=cds-WP_023254529.1;Parent=gene-CFSAN001082_RS38570;Dbxref=GenBank:WP_023254529.1;Name=WP_023254529.1;Ontology_term=GO:0009166,GO:0000166,GO:0008663,GO:0016788;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase activity|0008663||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=nucleotide catabolic process|0009166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463264.1;locus_tag=CFSAN001082_RS38570;product=bifunctional 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;protein_id=WP_023254529.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	12567	13307	.	+	.	ID=gene-CFSAN001082_RS38580;Name=cysQ;gbkey=Gene;gene=cysQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38580;old_locus_tag=CFSAN001082_14922
NZ_APAH01000289.1	Protein Homology	CDS	12567	13307	.	+	0	ID=cds-WP_000893398.1;Parent=gene-CFSAN001082_RS38580;Dbxref=GenBank:WP_000893398.1;Name=WP_000893398.1;Ontology_term=GO:0000287,GO:0008441;gbkey=CDS;gene=cysQ;go_function=magnesium ion binding|0000287||IEA,3'(2')%2C5'-bisphosphate nucleotidase activity|0008441||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463265.1;locus_tag=CFSAN001082_RS38580;product=3'(2')%2C5'-bisphosphate nucleotidase CysQ;protein_id=WP_000893398.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	13297	13854	.	-	.	ID=gene-CFSAN001082_RS38585;Name=CFSAN001082_RS38585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38585;old_locus_tag=CFSAN001082_14927
NZ_APAH01000289.1	Protein Homology	CDS	13297	13854	.	-	0	ID=cds-WP_023220404.1;Parent=gene-CFSAN001082_RS38585;Dbxref=GenBank:WP_023220404.1;Name=WP_023220404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463266.1;locus_tag=CFSAN001082_RS38585;product=YtfJ family protein;protein_id=WP_023220404.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	14181	14387	.	+	.	ID=gene-CFSAN001082_RS38590;Name=CFSAN001082_RS38590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38590;old_locus_tag=CFSAN001082_14932
NZ_APAH01000289.1	Protein Homology	CDS	14181	14387	.	+	0	ID=cds-WP_000689229.1;Parent=gene-CFSAN001082_RS38590;Dbxref=GenBank:WP_000689229.1;Name=WP_000689229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966176.1;locus_tag=CFSAN001082_RS38590;product=DUF1107 domain-containing protein;protein_id=WP_000689229.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	14472	15815	.	-	.	ID=gene-CFSAN001082_RS38595;Name=CFSAN001082_RS38595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38595;old_locus_tag=CFSAN001082_14937
NZ_APAH01000289.1	Protein Homology	CDS	14472	15815	.	-	0	ID=cds-WP_000934970.1;Parent=gene-CFSAN001082_RS38595;Dbxref=GenBank:WP_000934970.1;Name=WP_000934970.1;Ontology_term=GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463268.1;locus_tag=CFSAN001082_RS38595;product=hemolysin family protein;protein_id=WP_000934970.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	15998	16636	.	-	.	ID=gene-CFSAN001082_RS38600;Name=msrA;gbkey=Gene;gene=msrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38600;old_locus_tag=CFSAN001082_14942
NZ_APAH01000289.1	Protein Homology	CDS	15998	16636	.	-	0	ID=cds-WP_000051471.1;Parent=gene-CFSAN001082_RS38600;Dbxref=GenBank:WP_000051471.1;Name=WP_000051471.1;Ontology_term=GO:0006979,GO:0030091,GO:0008113,GO:0033744;gbkey=CDS;gene=msrA;go_function=peptide-methionine (S)-S-oxide reductase activity|0008113||IEA,L-methionine:thioredoxin-disulfide S-oxidoreductase activity|0033744||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463269.1;locus_tag=CFSAN001082_RS38600;product=peptide-methionine (S)-S-oxide reductase MsrA;protein_id=WP_000051471.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	16849	18582	.	+	.	ID=gene-CFSAN001082_RS38605;Name=tamA;gbkey=Gene;gene=tamA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38605;old_locus_tag=CFSAN001082_14947
NZ_APAH01000289.1	Protein Homology	CDS	16849	18582	.	+	0	ID=cds-WP_001120237.1;Parent=gene-CFSAN001082_RS38605;Dbxref=GenBank:WP_001120237.1;Name=WP_001120237.1;Ontology_term=GO:0009306,GO:0089705;gbkey=CDS;gene=tamA;go_process=protein secretion|0009306||IEA,protein localization to outer membrane|0089705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463270.1;locus_tag=CFSAN001082_RS38605;product=autotransporter assembly complex protein TamA;protein_id=WP_001120237.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	18579	22358	.	+	.	ID=gene-CFSAN001082_RS38610;Name=tamB;gbkey=Gene;gene=tamB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38610;old_locus_tag=CFSAN001082_14952
NZ_APAH01000289.1	Protein Homology	CDS	18579	22358	.	+	0	ID=cds-WP_023254530.1;Parent=gene-CFSAN001082_RS38610;Dbxref=GenBank:WP_023254530.1;Name=WP_023254530.1;Ontology_term=GO:0009306,GO:0089705;gbkey=CDS;gene=tamB;go_process=protein secretion|0009306||IEA,protein localization to outer membrane|0089705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463271.1;locus_tag=CFSAN001082_RS38610;product=autotransporter assembly complex protein TamB;protein_id=WP_023254530.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	22361	22705	.	+	.	ID=gene-CFSAN001082_RS38615;Name=CFSAN001082_RS38615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38615;old_locus_tag=CFSAN001082_14957
NZ_APAH01000289.1	Protein Homology	CDS	22361	22705	.	+	0	ID=cds-WP_001219167.1;Parent=gene-CFSAN001082_RS38615;Dbxref=GenBank:WP_001219167.1;Name=WP_001219167.1;Ontology_term=GO:0061929;gbkey=CDS;go_function=gamma-glutamylaminecyclotransferase activity|0061929||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463272.1;locus_tag=CFSAN001082_RS38615;product=gamma-glutamylcyclotransferase family protein;protein_id=WP_001219167.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	22760	23968	.	-	.	ID=gene-CFSAN001082_RS38620;Name=CFSAN001082_RS38620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38620;old_locus_tag=CFSAN001082_14962
NZ_APAH01000289.1	Protein Homology	CDS	22760	23968	.	-	0	ID=cds-WP_000203131.1;Parent=gene-CFSAN001082_RS38620;Dbxref=GenBank:WP_000203131.1;Name=WP_000203131.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463273.1;locus_tag=CFSAN001082_RS38620;product=MFS transporter;protein_id=WP_000203131.1;transl_table=11
NZ_APAH01000289.1	RefSeq	gene	23965	25128	.	-	.	ID=gene-CFSAN001082_RS38625;Name=CFSAN001082_RS38625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38625;old_locus_tag=CFSAN001082_14967
NZ_APAH01000289.1	Protein Homology	CDS	23965	25128	.	-	0	ID=cds-WP_000977207.1;Parent=gene-CFSAN001082_RS38625;Dbxref=GenBank:WP_000977207.1;Name=WP_000977207.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463274.1;locus_tag=CFSAN001082_RS38625;product=metallo-dependent hydrolase;protein_id=WP_000977207.1;transl_table=11
##sequence-region NZ_APAH01000290.1 1 40782
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000290.1	RefSeq	region	1	40782	.	+	.	ID=NZ_APAH01000290.1:1..40782;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000290.1	RefSeq	gene	2	78	.	-	.	ID=gene-CFSAN001082_RS38630;Name=CFSAN001082_RS38630;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS38630;old_locus_tag=CFSAN001082_t15179
NZ_APAH01000290.1	tRNAscan-SE	tRNA	2	78	.	-	.	ID=rna-CFSAN001082_RS38630;Parent=gene-CFSAN001082_RS38630;anticodon=(pos:complement(42..44));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS38630;product=tRNA-Arg
NZ_APAH01000290.1	tRNAscan-SE	exon	2	78	.	-	.	ID=exon-CFSAN001082_RS38630-1;Parent=rna-CFSAN001082_RS38630;anticodon=(pos:complement(42..44));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS38630;product=tRNA-Arg
NZ_APAH01000290.1	RefSeq	gene	141	217	.	-	.	ID=gene-CFSAN001082_RS38635;Name=CFSAN001082_RS38635;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS38635;old_locus_tag=CFSAN001082_t15181
NZ_APAH01000290.1	tRNAscan-SE	tRNA	141	217	.	-	.	ID=rna-CFSAN001082_RS38635;Parent=gene-CFSAN001082_RS38635;anticodon=(pos:complement(181..183));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS38635;product=tRNA-Arg
NZ_APAH01000290.1	tRNAscan-SE	exon	141	217	.	-	.	ID=exon-CFSAN001082_RS38635-1;Parent=rna-CFSAN001082_RS38635;anticodon=(pos:complement(181..183));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS38635;product=tRNA-Arg
NZ_APAH01000290.1	RefSeq	gene	279	355	.	-	.	ID=gene-CFSAN001082_RS38640;Name=CFSAN001082_RS38640;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS38640;old_locus_tag=CFSAN001082_t15183
NZ_APAH01000290.1	tRNAscan-SE	tRNA	279	355	.	-	.	ID=rna-CFSAN001082_RS38640;Parent=gene-CFSAN001082_RS38640;anticodon=(pos:complement(319..321));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS38640;product=tRNA-Arg
NZ_APAH01000290.1	tRNAscan-SE	exon	279	355	.	-	.	ID=exon-CFSAN001082_RS38640-1;Parent=rna-CFSAN001082_RS38640;anticodon=(pos:complement(319..321));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS38640;product=tRNA-Arg
NZ_APAH01000290.1	RefSeq	gene	359	451	.	-	.	ID=gene-CFSAN001082_RS38645;Name=CFSAN001082_RS38645;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS38645;old_locus_tag=CFSAN001082_t15185
NZ_APAH01000290.1	tRNAscan-SE	tRNA	359	451	.	-	.	ID=rna-CFSAN001082_RS38645;Parent=gene-CFSAN001082_RS38645;anticodon=(pos:complement(415..417));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS38645;product=tRNA-Ser
NZ_APAH01000290.1	tRNAscan-SE	exon	359	451	.	-	.	ID=exon-CFSAN001082_RS38645-1;Parent=rna-CFSAN001082_RS38645;anticodon=(pos:complement(415..417));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS38645;product=tRNA-Ser
NZ_APAH01000290.1	RefSeq	gene	755	940	.	-	.	ID=gene-CFSAN001082_RS38650;Name=csrA;gbkey=Gene;gene=csrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38650;old_locus_tag=CFSAN001082_14972
NZ_APAH01000290.1	Protein Homology	CDS	755	940	.	-	0	ID=cds-WP_000906486.1;Parent=gene-CFSAN001082_RS38650;Dbxref=GenBank:WP_000906486.1;Name=WP_000906486.1;gbkey=CDS;gene=csrA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001774971.1;locus_tag=CFSAN001082_RS38650;product=carbon storage regulator CsrA;protein_id=WP_000906486.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	1175	3805	.	-	.	ID=gene-CFSAN001082_RS38655;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38655;old_locus_tag=CFSAN001082_14977
NZ_APAH01000290.1	Protein Homology	CDS	1175	3805	.	-	0	ID=cds-WP_023254531.1;Parent=gene-CFSAN001082_RS38655;Dbxref=GenBank:WP_023254531.1;Name=WP_023254531.1;Ontology_term=GO:0006419,GO:0000166,GO:0004813,GO:0005737;gbkey=CDS;gene=alaS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,alanine-tRNA ligase activity|0004813||IEA;go_process=alanyl-tRNA aminoacylation|0006419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461748.1;locus_tag=CFSAN001082_RS38655;product=alanine--tRNA ligase;protein_id=WP_023254531.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	4041	4541	.	-	.	ID=gene-CFSAN001082_RS38660;Name=recX;gbkey=Gene;gene=recX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38660;old_locus_tag=CFSAN001082_14982
NZ_APAH01000290.1	Protein Homology	CDS	4041	4541	.	-	0	ID=cds-WP_001294863.1;Parent=gene-CFSAN001082_RS38660;Dbxref=GenBank:WP_001294863.1;Name=WP_001294863.1;gbkey=CDS;gene=recX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461749.1;locus_tag=CFSAN001082_RS38660;product=recombination regulator RecX;protein_id=WP_001294863.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	4658	5719	.	-	.	ID=gene-CFSAN001082_RS38665;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38665;old_locus_tag=CFSAN001082_14987
NZ_APAH01000290.1	Protein Homology	CDS	4658	5719	.	-	0	ID=cds-WP_000963150.1;Parent=gene-CFSAN001082_RS38665;Dbxref=GenBank:WP_000963150.1;Name=WP_000963150.1;Ontology_term=GO:0006281,GO:0003677,GO:0003697,GO:0005524,GO:0008094;gbkey=CDS;gene=recA;go_function=DNA binding|0003677||IEA,single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA,ATP-dependent activity%2C acting on DNA|0008094||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461750.1;locus_tag=CFSAN001082_RS38665;product=recombinase RecA;protein_id=WP_000963150.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	5804	6301	.	-	.	ID=gene-CFSAN001082_RS38670;Name=pncC;gbkey=Gene;gene=pncC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38670;old_locus_tag=CFSAN001082_14992
NZ_APAH01000290.1	Protein Homology	CDS	5804	6301	.	-	0	ID=cds-WP_000132239.1;Parent=gene-CFSAN001082_RS38670;Dbxref=GenBank:WP_000132239.1;Name=WP_000132239.1;gbkey=CDS;gene=pncC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461751.1;locus_tag=CFSAN001082_RS38670;product=nicotinamide-nucleotide amidase;protein_id=WP_000132239.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	6497	6742	.	+	.	ID=gene-CFSAN001082_RS48940;Name=CFSAN001082_RS48940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48940;old_locus_tag=CFSAN001082_14997
NZ_APAH01000290.1	Protein Homology	CDS	6497	6742	.	+	0	ID=cds-WP_000053777.1;Parent=gene-CFSAN001082_RS48940;Dbxref=GenBank:WP_000053777.1;Name=WP_000053777.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000053775.1;locus_tag=CFSAN001082_RS48940;product=hypothetical protein;protein_id=WP_000053777.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	6780	7859	.	-	.	ID=gene-CFSAN001082_RS38680;Name=mltB;gbkey=Gene;gene=mltB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38680;old_locus_tag=CFSAN001082_15002
NZ_APAH01000290.1	Protein Homology	CDS	6780	7859	.	-	0	ID=cds-WP_000476826.1;Parent=gene-CFSAN001082_RS38680;Dbxref=GenBank:WP_000476826.1;Name=WP_000476826.1;gbkey=CDS;gene=mltB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461752.1;locus_tag=CFSAN001082_RS38680;product=lytic murein transglycosylase B;protein_id=WP_000476826.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	8113	8676	.	+	.	ID=gene-CFSAN001082_RS38685;Name=srlA;gbkey=Gene;gene=srlA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38685;old_locus_tag=CFSAN001082_15007
NZ_APAH01000290.1	Protein Homology	CDS	8113	8676	.	+	0	ID=cds-WP_000573333.1;Parent=gene-CFSAN001082_RS38685;Dbxref=GenBank:WP_000573333.1;Name=WP_000573333.1;Ontology_term=GO:0009401,GO:0015795;gbkey=CDS;gene=srlA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,sorbitol transmembrane transport|0015795||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461753.1;locus_tag=CFSAN001082_RS38685;product=PTS glucitol/sorbitol transporter subunit IIC;protein_id=WP_000573333.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	8673	9644	.	+	.	ID=gene-CFSAN001082_RS38690;Name=srlE;gbkey=Gene;gene=srlE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38690;old_locus_tag=CFSAN001082_15012
NZ_APAH01000290.1	Protein Homology	CDS	8673	9644	.	+	0	ID=cds-WP_000199039.1;Parent=gene-CFSAN001082_RS38690;Dbxref=GenBank:WP_000199039.1;Name=WP_000199039.1;Ontology_term=GO:0009401,GO:0015795,GO:0008982,GO:0016301;gbkey=CDS;gene=srlE;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,kinase activity|0016301||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,sorbitol transmembrane transport|0015795||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461754.1;locus_tag=CFSAN001082_RS38690;product=PTS glucitol/sorbitol transporter subunit IIB;protein_id=WP_000199039.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	9656	10018	.	+	.	ID=gene-CFSAN001082_RS38695;Name=srlB;gbkey=Gene;gene=srlB;gene_biotype=protein_coding;gene_synonym=gutB;locus_tag=CFSAN001082_RS38695;old_locus_tag=CFSAN001082_15017
NZ_APAH01000290.1	Protein Homology	CDS	9656	10018	.	+	0	ID=cds-WP_000111555.1;Parent=gene-CFSAN001082_RS38695;Dbxref=GenBank:WP_000111555.1;Name=WP_000111555.1;gbkey=CDS;gene=srlB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461755.1;locus_tag=CFSAN001082_RS38695;product=PTS glucitol/sorbitol transporter subunit IIA;protein_id=WP_000111555.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	10030	10809	.	+	.	ID=gene-CFSAN001082_RS38700;Name=srlD;gbkey=Gene;gene=srlD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38700;old_locus_tag=CFSAN001082_15022
NZ_APAH01000290.1	Protein Homology	CDS	10030	10809	.	+	0	ID=cds-WP_001077372.1;Parent=gene-CFSAN001082_RS38700;Dbxref=GenBank:WP_001077372.1;Name=WP_001077372.1;Ontology_term=GO:0016491;gbkey=CDS;gene=srlD;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461756.1;locus_tag=CFSAN001082_RS38700;product=sorbitol-6-phosphate dehydrogenase;protein_id=WP_001077372.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	10886	11245	.	+	.	ID=gene-CFSAN001082_RS38705;Name=gutM;gbkey=Gene;gene=gutM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38705;old_locus_tag=CFSAN001082_15027
NZ_APAH01000290.1	Protein Homology	CDS	10886	11245	.	+	0	ID=cds-WP_000255198.1;Parent=gene-CFSAN001082_RS38705;Dbxref=GenBank:WP_000255198.1;Name=WP_000255198.1;gbkey=CDS;gene=gutM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461757.1;locus_tag=CFSAN001082_RS38705;product=transcriptional regulator GutM;protein_id=WP_000255198.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	11443	12216	.	+	.	ID=gene-CFSAN001082_RS38710;Name=srlR;gbkey=Gene;gene=srlR;gene_biotype=protein_coding;gene_synonym=gutR;locus_tag=CFSAN001082_RS38710;old_locus_tag=CFSAN001082_15032
NZ_APAH01000290.1	Protein Homology	CDS	11443	12216	.	+	0	ID=cds-WP_000804536.1;Parent=gene-CFSAN001082_RS38710;Dbxref=GenBank:WP_000804536.1;Name=WP_000804536.1;Ontology_term=GO:0045892,GO:0003700;gbkey=CDS;gene=srlR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461758.1;locus_tag=CFSAN001082_RS38710;product=glucitol operon DNA-binding transcriptional repressor SrlR;protein_id=WP_000804536.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	12209	13174	.	+	.	ID=gene-CFSAN001082_RS38715;Name=gutQ;gbkey=Gene;gene=gutQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38715;old_locus_tag=CFSAN001082_15037
NZ_APAH01000290.1	Protein Homology	CDS	12209	13174	.	+	0	ID=cds-WP_001278206.1;Parent=gene-CFSAN001082_RS38715;Dbxref=GenBank:WP_001278206.1;Name=WP_001278206.1;gbkey=CDS;gene=gutQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311591.2;locus_tag=CFSAN001082_RS38715;product=arabinose-5-phosphate isomerase GutQ;protein_id=WP_001278206.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	13171	14691	.	-	.	ID=gene-CFSAN001082_RS38720;Name=norR;gbkey=Gene;gene=norR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38720;old_locus_tag=CFSAN001082_15042
NZ_APAH01000290.1	Protein Homology	CDS	13171	14691	.	-	0	ID=cds-WP_000010808.1;Parent=gene-CFSAN001082_RS38720;Dbxref=GenBank:WP_000010808.1;Name=WP_000010808.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=norR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461760.1;locus_tag=CFSAN001082_RS38720;product=nitric oxide reductase transcriptional regulator NorR;protein_id=WP_000010808.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	14877	16316	.	+	.	ID=gene-CFSAN001082_RS38725;Name=norV;gbkey=Gene;gene=norV;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38725;old_locus_tag=CFSAN001082_15047
NZ_APAH01000290.1	Protein Homology	CDS	14877	16316	.	+	0	ID=cds-WP_000026012.1;Parent=gene-CFSAN001082_RS38725;Dbxref=GenBank:WP_000026012.1;Name=WP_000026012.1;Ontology_term=GO:0009055,GO:0010181,GO:0016966,GO:0046872;gbkey=CDS;gene=norV;go_function=electron transfer activity|0009055||IEA,FMN binding|0010181||IEA,nitric oxide reductase activity|0016966||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461761.1;locus_tag=CFSAN001082_RS38725;product=anaerobic nitric oxide reductase flavorubredoxin;protein_id=WP_000026012.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	16313	17446	.	+	.	ID=gene-CFSAN001082_RS38730;Name=norW;gbkey=Gene;gene=norW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38730;old_locus_tag=CFSAN001082_15052
NZ_APAH01000290.1	Protein Homology	CDS	16313	17446	.	+	0	ID=cds-WP_023202132.1;Parent=gene-CFSAN001082_RS38730;Dbxref=GenBank:WP_023202132.1;Name=WP_023202132.1;Ontology_term=GO:0016731;gbkey=CDS;gene=norW;go_function=oxidoreductase activity%2C acting on iron-sulfur proteins as donors%2C NAD or NADP as acceptor|0016731||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461762.1;locus_tag=CFSAN001082_RS38730;product=NADH:flavorubredoxin reductase NorW;protein_id=WP_023202132.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	17543	19783	.	-	.	ID=gene-CFSAN001082_RS38735;Name=hypF;gbkey=Gene;gene=hypF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38735;old_locus_tag=CFSAN001082_15057
NZ_APAH01000290.1	Protein Homology	CDS	17543	19783	.	-	0	ID=cds-WP_023254532.1;Parent=gene-CFSAN001082_RS38735;Dbxref=GenBank:WP_023254532.1;Name=WP_023254532.1;Ontology_term=GO:0036211,GO:0003998,GO:0016743,GO:0046872;gbkey=CDS;gene=hypF;go_function=acylphosphatase activity|0003998||IEA,carboxyl- or carbamoyltransferase activity|0016743||IEA,metal ion binding|0046872||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461763.1;locus_tag=CFSAN001082_RS38735;product=carbamoyltransferase HypF;protein_id=WP_023254532.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	19929	20474	.	-	.	ID=gene-CFSAN001082_RS38740;Name=hydN;gbkey=Gene;gene=hydN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38740;old_locus_tag=CFSAN001082_15062
NZ_APAH01000290.1	Protein Homology	CDS	19929	20474	.	-	0	ID=cds-WP_001078791.1;Parent=gene-CFSAN001082_RS38740;Dbxref=GenBank:WP_001078791.1;Name=WP_001078791.1;gbkey=CDS;gene=hydN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461764.1;locus_tag=CFSAN001082_RS38740;product=electron transport protein HydN;protein_id=WP_001078791.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	20675	21484	.	-	.	ID=gene-CFSAN001082_RS38745;Name=CFSAN001082_RS38745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38745;old_locus_tag=CFSAN001082_15067
NZ_APAH01000290.1	Protein Homology	CDS	20675	21484	.	-	0	ID=cds-WP_000902286.1;Parent=gene-CFSAN001082_RS38745;Dbxref=GenBank:WP_000902286.1;Name=WP_000902286.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461765.1;locus_tag=CFSAN001082_RS38745;product=hypothetical protein;protein_id=WP_000902286.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	21511	21981	.	-	.	ID=gene-CFSAN001082_RS38750;Name=hycI;gbkey=Gene;gene=hycI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38750;old_locus_tag=CFSAN001082_15072
NZ_APAH01000290.1	Protein Homology	CDS	21511	21981	.	-	0	ID=cds-WP_010835030.1;Parent=gene-CFSAN001082_RS38750;Dbxref=GenBank:WP_010835030.1;Name=WP_010835030.1;Ontology_term=GO:0036211,GO:0004190;gbkey=CDS;gene=hycI;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461766.1;locus_tag=CFSAN001082_RS38750;product=hydrogenase maturation peptidase HycI;protein_id=WP_010835030.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	21974	22384	.	-	.	ID=gene-CFSAN001082_RS38755;Name=CFSAN001082_RS38755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38755;old_locus_tag=CFSAN001082_15077
NZ_APAH01000290.1	Protein Homology	CDS	21974	22384	.	-	0	ID=cds-WP_000003725.1;Parent=gene-CFSAN001082_RS38755;Dbxref=GenBank:WP_000003725.1;Name=WP_000003725.1;Ontology_term=GO:0065003;gbkey=CDS;go_process=protein-containing complex assembly|0065003||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461767.1;locus_tag=CFSAN001082_RS38755;product=formate hydrogenlyase maturation HycH family protein;protein_id=WP_000003725.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	22381	23148	.	-	.	ID=gene-CFSAN001082_RS38760;Name=hycG;gbkey=Gene;gene=hycG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38760;old_locus_tag=CFSAN001082_15082
NZ_APAH01000290.1	Protein Homology	CDS	22381	23148	.	-	0	ID=cds-WP_000067419.1;Parent=gene-CFSAN001082_RS38760;Dbxref=GenBank:WP_000067419.1;Name=WP_000067419.1;gbkey=CDS;gene=hycG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461768.1;locus_tag=CFSAN001082_RS38760;product=formate hydrogenlyase subunit HycG;protein_id=WP_000067419.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	23148	23690	.	-	.	ID=gene-CFSAN001082_RS38765;Name=hycF;gbkey=Gene;gene=hycF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38765;old_locus_tag=CFSAN001082_15087
NZ_APAH01000290.1	Protein Homology	CDS	23148	23690	.	-	0	ID=cds-WP_000493773.1;Parent=gene-CFSAN001082_RS38765;Dbxref=GenBank:WP_000493773.1;Name=WP_000493773.1;gbkey=CDS;gene=hycF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461769.1;locus_tag=CFSAN001082_RS38765;product=formate hydrogenlyase subunit HycF;protein_id=WP_000493773.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	23700	25409	.	-	.	ID=gene-CFSAN001082_RS38770;Name=hycE;gbkey=Gene;gene=hycE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38770;old_locus_tag=CFSAN001082_15092
NZ_APAH01000290.1	Protein Homology	CDS	23700	25409	.	-	0	ID=cds-WP_001288155.1;Parent=gene-CFSAN001082_RS38770;Dbxref=GenBank:WP_001288155.1;Name=WP_001288155.1;gbkey=CDS;gene=hycE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130590.1;locus_tag=CFSAN001082_RS38770;product=formate hydrogenlyase subunit HycE;protein_id=WP_001288155.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	25427	26350	.	-	.	ID=gene-CFSAN001082_RS38775;Name=CFSAN001082_RS38775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38775;old_locus_tag=CFSAN001082_15097
NZ_APAH01000290.1	Protein Homology	CDS	25427	26350	.	-	0	ID=cds-WP_000110563.1;Parent=gene-CFSAN001082_RS38775;Dbxref=GenBank:WP_000110563.1;Name=WP_000110563.1;Ontology_term=GO:0022900,GO:0016491,GO:1990204;gbkey=CDS;go_component=oxidoreductase complex|1990204||IEA;go_function=oxidoreductase activity|0016491||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461771.1;locus_tag=CFSAN001082_RS38775;product=respiratory chain complex I subunit 1 family protein;protein_id=WP_000110563.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	26353	28179	.	-	.	ID=gene-CFSAN001082_RS38780;Name=hycC;gbkey=Gene;gene=hycC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38780;old_locus_tag=CFSAN001082_15102
NZ_APAH01000290.1	Protein Homology	CDS	26353	28179	.	-	0	ID=cds-WP_023254533.1;Parent=gene-CFSAN001082_RS38780;Dbxref=GenBank:WP_023254533.1;Name=WP_023254533.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=hycC;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461772.2;locus_tag=CFSAN001082_RS38780;product=formate hydrogenlyase subunit 3;protein_id=WP_023254533.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	28179	28787	.	-	.	ID=gene-CFSAN001082_RS38785;Name=hycB;gbkey=Gene;gene=hycB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38785;old_locus_tag=CFSAN001082_15107
NZ_APAH01000290.1	Protein Homology	CDS	28179	28787	.	-	0	ID=cds-WP_001079164.1;Parent=gene-CFSAN001082_RS38785;Dbxref=GenBank:WP_001079164.1;Name=WP_001079164.1;gbkey=CDS;gene=hycB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461773.1;locus_tag=CFSAN001082_RS38785;product=formate hydrogenlyase subunit HycB;protein_id=WP_001079164.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	28933	29394	.	-	.	ID=gene-CFSAN001082_RS38790;Name=hycA;gbkey=Gene;gene=hycA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38790;old_locus_tag=CFSAN001082_15112
NZ_APAH01000290.1	Protein Homology	CDS	28933	29394	.	-	0	ID=cds-WP_000158075.1;Parent=gene-CFSAN001082_RS38790;Dbxref=GenBank:WP_000158075.1;Name=WP_000158075.1;gbkey=CDS;gene=hycA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461774.1;locus_tag=CFSAN001082_RS38790;product=formate hydrogenlyase regulator HycA;protein_id=WP_000158075.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	29604	29960	.	+	.	ID=gene-CFSAN001082_RS38795;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38795;old_locus_tag=CFSAN001082_15117
NZ_APAH01000290.1	Protein Homology	CDS	29604	29960	.	+	0	ID=cds-WP_000544461.1;Parent=gene-CFSAN001082_RS38795;Dbxref=GenBank:WP_000544461.1;Name=WP_000544461.1;Ontology_term=GO:0036211,GO:0008901,GO:0016151;gbkey=CDS;gene=hypA;go_function=ferredoxin hydrogenase activity|0008901||IEA,nickel cation binding|0016151||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461775.1;locus_tag=CFSAN001082_RS38795;product=hydrogenase maturation nickel metallochaperone HypA;protein_id=WP_000544461.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	30029	30901	.	+	.	ID=gene-CFSAN001082_RS38800;Name=hypB;gbkey=Gene;gene=hypB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38800;old_locus_tag=CFSAN001082_15122
NZ_APAH01000290.1	Protein Homology	CDS	30029	30901	.	+	0	ID=cds-WP_000337636.1;Parent=gene-CFSAN001082_RS38800;Dbxref=GenBank:WP_000337636.1;Name=WP_000337636.1;Ontology_term=GO:0051604,GO:0003924,GO:0016151;gbkey=CDS;gene=hypB;go_function=GTPase activity|0003924||IEA,nickel cation binding|0016151||IEA;go_process=protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461776.1;locus_tag=CFSAN001082_RS38800;product=hydrogenase nickel incorporation protein HypB;protein_id=WP_000337636.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	30892	31164	.	+	.	ID=gene-CFSAN001082_RS38805;Name=hypC;gbkey=Gene;gene=hypC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38805;old_locus_tag=CFSAN001082_15127
NZ_APAH01000290.1	Protein Homology	CDS	30892	31164	.	+	0	ID=cds-WP_000334871.1;Parent=gene-CFSAN001082_RS38805;Dbxref=GenBank:WP_000334871.1;Name=WP_000334871.1;gbkey=CDS;gene=hypC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461777.1;locus_tag=CFSAN001082_RS38805;product=hydrogenase 3 maturation protein HypC;protein_id=WP_000334871.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	31164	32285	.	+	.	ID=gene-CFSAN001082_RS38810;Name=hypD;gbkey=Gene;gene=hypD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38810;old_locus_tag=CFSAN001082_15132
NZ_APAH01000290.1	Protein Homology	CDS	31164	32285	.	+	0	ID=cds-WP_001212962.1;Parent=gene-CFSAN001082_RS38810;Dbxref=GenBank:WP_001212962.1;Name=WP_001212962.1;Ontology_term=GO:0036211,GO:0016530;gbkey=CDS;gene=hypD;go_function=metallochaperone activity|0016530||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461778.2;locus_tag=CFSAN001082_RS38810;product=hydrogenase formation protein HypD;protein_id=WP_001212962.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	32282	33292	.	+	.	ID=gene-CFSAN001082_RS38815;Name=hypE;gbkey=Gene;gene=hypE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38815;old_locus_tag=CFSAN001082_15137
NZ_APAH01000290.1	Protein Homology	CDS	32282	33292	.	+	0	ID=cds-WP_001059962.1;Parent=gene-CFSAN001082_RS38815;Dbxref=GenBank:WP_001059962.1;Name=WP_001059962.1;gbkey=CDS;gene=hypE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417210.2;locus_tag=CFSAN001082_RS38815;product=hydrogenase expression/formation protein HypE;protein_id=WP_001059962.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	33511	35589	.	+	.	ID=gene-CFSAN001082_RS38820;Name=flhA;gbkey=Gene;gene=flhA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38820;old_locus_tag=CFSAN001082_15142
NZ_APAH01000290.1	Protein Homology	CDS	33511	35589	.	+	0	ID=cds-WP_001728891.1;Parent=gene-CFSAN001082_RS38820;Dbxref=GenBank:WP_001728891.1;Name=WP_001728891.1;Ontology_term=GO:0006355,GO:0005515,GO:0005524,GO:0008134,GO:0043565;gbkey=CDS;gene=flhA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA,transcription factor binding|0008134||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461780.1;locus_tag=CFSAN001082_RS38820;product=formate hydrogenlyase transcriptional activator FlhA;protein_id=WP_001728891.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	35651	35995	.	-	.	ID=gene-CFSAN001082_RS38825;Name=CFSAN001082_RS38825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38825;old_locus_tag=CFSAN001082_15147
NZ_APAH01000290.1	Protein Homology	CDS	35651	35995	.	-	0	ID=cds-WP_001117944.1;Parent=gene-CFSAN001082_RS38825;Dbxref=GenBank:WP_001117944.1;Name=WP_001117944.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461781.1;locus_tag=CFSAN001082_RS38825;product=nitrous oxide-stimulated promoter family protein;protein_id=WP_001117944.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	36177	37094	.	+	.	ID=gene-CFSAN001082_RS38830;Name=sitA;gbkey=Gene;gene=sitA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38830;old_locus_tag=CFSAN001082_15152
NZ_APAH01000290.1	Protein Homology	CDS	36177	37094	.	+	0	ID=cds-WP_000182930.1;Parent=gene-CFSAN001082_RS38830;Dbxref=GenBank:WP_000182930.1;Name=WP_000182930.1;gbkey=CDS;gene=sitA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461782.1;locus_tag=CFSAN001082_RS38830;product=iron/manganese ABC transporter substrate-binding protein SitA;protein_id=WP_000182930.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	37091	37912	.	+	.	ID=gene-CFSAN001082_RS38835;Name=sitB;gbkey=Gene;gene=sitB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38835;old_locus_tag=CFSAN001082_15157
NZ_APAH01000290.1	Protein Homology	CDS	37091	37912	.	+	0	ID=cds-WP_000083153.1;Parent=gene-CFSAN001082_RS38835;Dbxref=GenBank:WP_000083153.1;Name=WP_000083153.1;gbkey=CDS;gene=sitB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461783.1;locus_tag=CFSAN001082_RS38835;product=iron/manganese ABC transporter ATP-binding protein SitB;protein_id=WP_000083153.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	37909	38769	.	+	.	ID=gene-CFSAN001082_RS38840;Name=sitC;gbkey=Gene;gene=sitC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38840;old_locus_tag=CFSAN001082_15162
NZ_APAH01000290.1	Protein Homology	CDS	37909	38769	.	+	0	ID=cds-WP_001104336.1;Parent=gene-CFSAN001082_RS38840;Dbxref=GenBank:WP_001104336.1;Name=WP_001104336.1;gbkey=CDS;gene=sitC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461784.1;locus_tag=CFSAN001082_RS38840;product=iron/manganese ABC transporter permease subunit SitC;protein_id=WP_001104336.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	38760	39608	.	+	.	ID=gene-CFSAN001082_RS38845;Name=sitD;gbkey=Gene;gene=sitD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38845;old_locus_tag=CFSAN001082_15167
NZ_APAH01000290.1	Protein Homology	CDS	38760	39608	.	+	0	ID=cds-WP_000480209.1;Parent=gene-CFSAN001082_RS38845;Dbxref=GenBank:WP_000480209.1;Name=WP_000480209.1;gbkey=CDS;gene=sitD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461785.1;locus_tag=CFSAN001082_RS38845;product=iron/manganese ABC transporter permease subunit SitD;protein_id=WP_000480209.1;transl_table=11
NZ_APAH01000290.1	RefSeq	gene	39707	40615	.	-	.	ID=gene-CFSAN001082_RS38850;Name=avrA;gbkey=Gene;gene=avrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38850;old_locus_tag=CFSAN001082_15172
NZ_APAH01000290.1	Protein Homology	CDS	39707	40615	.	-	0	ID=cds-WP_077907223.1;Parent=gene-CFSAN001082_RS38850;Dbxref=GenBank:WP_077907223.1;Name=WP_077907223.1;gbkey=CDS;gene=avrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461786.1;locus_tag=CFSAN001082_RS38850;product=type III secretion system YopJ family effector AvrA;protein_id=WP_077907223.1;transl_table=11
##sequence-region NZ_APAH01000291.1 1 311
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000291.1	RefSeq	region	1	311	.	+	.	ID=NZ_APAH01000291.1:1..311;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000291.1	RefSeq	pseudogene	1	311	.	+	.	ID=gene-CFSAN001082_RS38855;Name=CFSAN001082_RS38855;end_range=311,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS38855;old_locus_tag=CFSAN001082_15185;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000291.1	Protein Homology	CDS	1	311	.	+	1	ID=cds-CFSAN001082_RS38855;Parent=gene-CFSAN001082_RS38855;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=311,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460513.1;locus_tag=CFSAN001082_RS38855;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000292.1 1 7666
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000292.1	RefSeq	region	1	7666	.	+	.	ID=NZ_APAH01000292.1:1..7666;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000292.1	RefSeq	gene	375	680	.	-	.	ID=gene-CFSAN001082_RS38860;Name=cbpM;gbkey=Gene;gene=cbpM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38860;old_locus_tag=CFSAN001082_15195
NZ_APAH01000292.1	Protein Homology	CDS	375	680	.	-	0	ID=cds-WP_001284251.1;Parent=gene-CFSAN001082_RS38860;Dbxref=GenBank:WP_001284251.1;Name=WP_001284251.1;gbkey=CDS;gene=cbpM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460084.1;locus_tag=CFSAN001082_RS38860;product=chaperone modulator CbpM;protein_id=WP_001284251.1;transl_table=11
NZ_APAH01000292.1	RefSeq	gene	680	1600	.	-	.	ID=gene-CFSAN001082_RS38865;Name=cbpA;gbkey=Gene;gene=cbpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38865;old_locus_tag=CFSAN001082_15200
NZ_APAH01000292.1	Protein Homology	CDS	680	1600	.	-	0	ID=cds-WP_000420603.1;Parent=gene-CFSAN001082_RS38865;Dbxref=GenBank:WP_000420603.1;Name=WP_000420603.1;Ontology_term=GO:0006457,GO:0051082;gbkey=CDS;gene=cbpA;go_function=unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460085.1;locus_tag=CFSAN001082_RS38865;product=curved DNA-binding protein;protein_id=WP_000420603.1;transl_table=11
NZ_APAH01000292.1	RefSeq	gene	1835	2197	.	+	.	ID=gene-CFSAN001082_RS38870;Name=CFSAN001082_RS38870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38870;old_locus_tag=CFSAN001082_15205
NZ_APAH01000292.1	Protein Homology	CDS	1835	2197	.	+	0	ID=cds-WP_023254535.1;Parent=gene-CFSAN001082_RS38870;Dbxref=GenBank:WP_023254535.1;Name=WP_023254535.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460086.1;locus_tag=CFSAN001082_RS38870;product=hypothetical protein;protein_id=WP_023254535.1;transl_table=11
NZ_APAH01000292.1	RefSeq	gene	2246	4132	.	+	.	ID=gene-CFSAN001082_RS38875;Name=CFSAN001082_RS38875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38875;old_locus_tag=CFSAN001082_15210
NZ_APAH01000292.1	Protein Homology	CDS	2246	4132	.	+	0	ID=cds-WP_023254536.1;Parent=gene-CFSAN001082_RS38875;Dbxref=GenBank:WP_023254536.1;Name=WP_023254536.1;Ontology_term=GO:0009055,GO:0015036;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460087.1;locus_tag=CFSAN001082_RS38875;product=protein-disulfide reductase DsbD family protein;protein_id=WP_023254536.1;transl_table=11
NZ_APAH01000292.1	RefSeq	gene	4129	4752	.	+	.	ID=gene-CFSAN001082_RS38880;Name=CFSAN001082_RS38880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38880;old_locus_tag=CFSAN001082_15215
NZ_APAH01000292.1	Protein Homology	CDS	4129	4752	.	+	0	ID=cds-WP_000876685.1;Parent=gene-CFSAN001082_RS38880;Dbxref=GenBank:WP_000876685.1;Name=WP_000876685.1;Ontology_term=GO:0015036;gbkey=CDS;go_function=disulfide oxidoreductase activity|0015036||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460088.1;locus_tag=CFSAN001082_RS38880;product=DsbA family protein;protein_id=WP_000876685.1;transl_table=11
NZ_APAH01000292.1	RefSeq	gene	4742	5248	.	+	.	ID=gene-CFSAN001082_RS38885;Name=CFSAN001082_RS38885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38885;old_locus_tag=CFSAN001082_15220
NZ_APAH01000292.1	Protein Homology	CDS	4742	5248	.	+	0	ID=cds-WP_000907522.1;Parent=gene-CFSAN001082_RS38885;Dbxref=GenBank:WP_000907522.1;Name=WP_000907522.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460089.1;locus_tag=CFSAN001082_RS38885;product=protein disulfide oxidoreductase;protein_id=WP_000907522.1;transl_table=11
NZ_APAH01000292.1	RefSeq	gene	5381	6622	.	+	.	ID=gene-CFSAN001082_RS38890;Name=agp;gbkey=Gene;gene=agp;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38890;old_locus_tag=CFSAN001082_15225
NZ_APAH01000292.1	Protein Homology	CDS	5381	6622	.	+	0	ID=cds-WP_000749194.1;Parent=gene-CFSAN001082_RS38890;Dbxref=GenBank:WP_000749194.1;Name=WP_000749194.1;gbkey=CDS;gene=agp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460090.1;locus_tag=CFSAN001082_RS38890;product=bifunctional glucose-1-phosphatase/inositol phosphatase;protein_id=WP_000749194.1;transl_table=11
NZ_APAH01000292.1	RefSeq	gene	6656	6883	.	-	.	ID=gene-CFSAN001082_RS38895;Name=CFSAN001082_RS38895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38895;old_locus_tag=CFSAN001082_15230
NZ_APAH01000292.1	Protein Homology	CDS	6656	6883	.	-	0	ID=cds-WP_001143125.1;Parent=gene-CFSAN001082_RS38895;Dbxref=GenBank:WP_001143125.1;Name=WP_001143125.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002898701.1;locus_tag=CFSAN001082_RS38895;product=YccJ family protein;protein_id=WP_001143125.1;transl_table=11
NZ_APAH01000292.1	RefSeq	gene	6904	7500	.	-	.	ID=gene-CFSAN001082_RS38900;Name=wrbA;gbkey=Gene;gene=wrbA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38900;old_locus_tag=CFSAN001082_15235
NZ_APAH01000292.1	Protein Homology	CDS	6904	7500	.	-	0	ID=cds-WP_001062898.1;Parent=gene-CFSAN001082_RS38900;Dbxref=GenBank:WP_001062898.1;Name=WP_001062898.1;Ontology_term=GO:0003955,GO:0010181;gbkey=CDS;gene=wrbA;go_function=NAD(P)H dehydrogenase (quinone) activity|0003955||IEA,FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460092.1;locus_tag=CFSAN001082_RS38900;product=NAD(P)H:quinone oxidoreductase;protein_id=WP_001062898.1;transl_table=11
##sequence-region NZ_APAH01000293.1 1 14305
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000293.1	RefSeq	region	1	14305	.	+	.	ID=NZ_APAH01000293.1:1..14305;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000293.1	RefSeq	gene	199	366	.	+	.	ID=gene-CFSAN001082_RS49250;Name=CFSAN001082_RS49250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49250
NZ_APAH01000293.1	Protein Homology	CDS	199	366	.	+	0	ID=cds-WP_370739650.1;Parent=gene-CFSAN001082_RS49250;Dbxref=GenBank:WP_370739650.1;Name=WP_370739650.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF046943.2;locus_tag=CFSAN001082_RS49250;product=protein YoaL;protein_id=WP_370739650.1;transl_table=11
NZ_APAH01000293.1	RefSeq	gene	354	1913	.	+	.	ID=gene-CFSAN001082_RS38905;Name=yoaE;gbkey=Gene;gene=yoaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38905;old_locus_tag=CFSAN001082_15240
NZ_APAH01000293.1	Protein Homology	CDS	354	1913	.	+	0	ID=cds-WP_000421815.1;Parent=gene-CFSAN001082_RS38905;Dbxref=GenBank:WP_000421815.1;Name=WP_000421815.1;gbkey=CDS;gene=yoaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460784.2;locus_tag=CFSAN001082_RS38905;product=CNNM family cation transport protein YoaE;protein_id=WP_000421815.1;transl_table=11
NZ_APAH01000293.1	RefSeq	gene	1935	3536	.	-	.	ID=gene-CFSAN001082_RS38910;Name=CFSAN001082_RS38910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38910;old_locus_tag=CFSAN001082_15245
NZ_APAH01000293.1	Protein Homology	CDS	1935	3536	.	-	0	ID=cds-WP_023254537.1;Parent=gene-CFSAN001082_RS38910;Dbxref=GenBank:WP_023254537.1;Name=WP_023254537.1;Ontology_term=GO:0007165,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001192512.1;locus_tag=CFSAN001082_RS38910;product=EAL domain-containing protein;protein_id=WP_023254537.1;transl_table=11
NZ_APAH01000293.1	RefSeq	gene	3674	5038	.	-	.	ID=gene-CFSAN001082_RS38915;Name=sdaA;gbkey=Gene;gene=sdaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38915;old_locus_tag=CFSAN001082_15250
NZ_APAH01000293.1	Protein Homology	CDS	3674	5038	.	-	0	ID=cds-WP_000624274.1;Parent=gene-CFSAN001082_RS38915;Dbxref=GenBank:WP_000624274.1;Name=WP_000624274.1;gbkey=CDS;gene=sdaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460782.1;locus_tag=CFSAN001082_RS38915;product=L-serine ammonia-lyase;protein_id=WP_000624274.1;transl_table=11
NZ_APAH01000293.1	RefSeq	gene	5302	5880	.	-	.	ID=gene-CFSAN001082_RS38920;Name=CFSAN001082_RS38920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38920;old_locus_tag=CFSAN001082_15255
NZ_APAH01000293.1	Protein Homology	CDS	5302	5880	.	-	0	ID=cds-WP_023254538.1;Parent=gene-CFSAN001082_RS38920;Dbxref=GenBank:WP_023254538.1;Name=WP_023254538.1;Ontology_term=GO:0000287,GO:0010945;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,coenzyme A diphosphatase activity|0010945||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460781.1;locus_tag=CFSAN001082_RS38920;product=CoA pyrophosphatase;protein_id=WP_023254538.1;transl_table=11
NZ_APAH01000293.1	RefSeq	gene	5884	7248	.	-	.	ID=gene-CFSAN001082_RS38925;Name=pabB;gbkey=Gene;gene=pabB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38925;old_locus_tag=CFSAN001082_15260
NZ_APAH01000293.1	Protein Homology	CDS	5884	7248	.	-	0	ID=cds-WP_023994269.1;Parent=gene-CFSAN001082_RS38925;Dbxref=GenBank:WP_023994269.1;Name=WP_023994269.1;Ontology_term=GO:0009396;gbkey=CDS;gene=pabB;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460780.1;locus_tag=CFSAN001082_RS38925;product=aminodeoxychorismate synthase component 1;protein_id=WP_023994269.1;transl_table=11
NZ_APAH01000293.1	RefSeq	gene	7329	7508	.	+	.	ID=gene-CFSAN001082_RS38930;Name=CFSAN001082_RS38930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38930;old_locus_tag=CFSAN001082_15265
NZ_APAH01000293.1	Protein Homology	CDS	7329	7508	.	+	0	ID=cds-WP_000457328.1;Parent=gene-CFSAN001082_RS38930;Dbxref=GenBank:WP_000457328.1;Name=WP_000457328.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460779.1;locus_tag=CFSAN001082_RS38930;product=YoaH family protein;protein_id=WP_000457328.1;transl_table=11
NZ_APAH01000293.1	RefSeq	gene	7514	7858	.	-	.	ID=gene-CFSAN001082_RS38935;Name=CFSAN001082_RS38935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38935;old_locus_tag=CFSAN001082_15270
NZ_APAH01000293.1	Protein Homology	CDS	7514	7858	.	-	0	ID=cds-WP_000029550.1;Parent=gene-CFSAN001082_RS38935;Dbxref=GenBank:WP_000029550.1;Name=WP_000029550.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460778.1;locus_tag=CFSAN001082_RS38935;product=RidA family protein;protein_id=WP_000029550.1;transl_table=11
NZ_APAH01000293.1	RefSeq	gene	7989	9899	.	+	.	ID=gene-CFSAN001082_RS38940;Name=CFSAN001082_RS38940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38940;old_locus_tag=CFSAN001082_15275
NZ_APAH01000293.1	Protein Homology	CDS	7989	9899	.	+	0	ID=cds-WP_000128801.1;Parent=gene-CFSAN001082_RS38940;Dbxref=GenBank:WP_000128801.1;Name=WP_000128801.1;Ontology_term=GO:0003676,GO:0003677,GO:0004386,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,DNA binding|0003677||IEA,helicase activity|0004386||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460777.1;locus_tag=CFSAN001082_RS38940;product=ATP-dependent DNA helicase;protein_id=WP_000128801.1;transl_table=11
NZ_APAH01000293.1	RefSeq	gene	9957	10652	.	+	.	ID=gene-CFSAN001082_RS38945;Name=tsaB;gbkey=Gene;gene=tsaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38945;old_locus_tag=CFSAN001082_15280
NZ_APAH01000293.1	Protein Homology	CDS	9957	10652	.	+	0	ID=cds-WP_020898843.1;Parent=gene-CFSAN001082_RS38945;Dbxref=GenBank:WP_020898843.1;Name=WP_020898843.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaB;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460776.1;locus_tag=CFSAN001082_RS38945;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB;protein_id=WP_020898843.1;transl_table=11
NZ_APAH01000293.1	RefSeq	gene	10724	11305	.	+	.	ID=gene-CFSAN001082_RS38950;Name=CFSAN001082_RS38950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38950;old_locus_tag=CFSAN001082_15285
NZ_APAH01000293.1	Protein Homology	CDS	10724	11305	.	+	0	ID=cds-WP_000290594.1;Parent=gene-CFSAN001082_RS38950;Dbxref=GenBank:WP_000290594.1;Name=WP_000290594.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460775.1;locus_tag=CFSAN001082_RS38950;product=Slp family lipoprotein;protein_id=WP_000290594.1;transl_table=11
NZ_APAH01000293.1	RefSeq	gene	11510	13195	.	+	.	ID=gene-CFSAN001082_RS38955;Name=fadD;gbkey=Gene;gene=fadD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38955;old_locus_tag=CFSAN001082_15290
NZ_APAH01000293.1	Protein Homology	CDS	11510	13195	.	+	0	ID=cds-WP_000758418.1;Parent=gene-CFSAN001082_RS38955;Dbxref=GenBank:WP_000758418.1;Name=WP_000758418.1;gbkey=CDS;gene=fadD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460774.1;locus_tag=CFSAN001082_RS38955;product=long-chain-fatty-acid--CoA ligase FadD;protein_id=WP_000758418.1;transl_table=11
NZ_APAH01000293.1	RefSeq	gene	13268	14305	.	+	.	ID=gene-CFSAN001082_RS38960;Name=rnd;end_range=14305,.;gbkey=Gene;gene=rnd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38960;old_locus_tag=CFSAN001082_15295;partial=true
NZ_APAH01000293.1	Protein Homology	CDS	13268	14305	.	+	0	ID=cds-WP_024145537.1;Parent=gene-CFSAN001082_RS38960;Dbxref=GenBank:WP_024145537.1;Name=WP_024145537.1;Ontology_term=GO:0008033,GO:0003676,GO:0008408,GO:0033890;end_range=14305,.;gbkey=CDS;gene=rnd;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA,ribonuclease D activity|0033890||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460773.1;locus_tag=CFSAN001082_RS38960;partial=true;product=ribonuclease D;protein_id=WP_024145537.1;transl_table=11
##sequence-region NZ_APAH01000294.1 1 4676
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000294.1	RefSeq	region	1	4676	.	+	.	ID=NZ_APAH01000294.1:1..4676;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000294.1	RefSeq	gene	345	797	.	+	.	ID=gene-CFSAN001082_RS38965;Name=CFSAN001082_RS38965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38965;old_locus_tag=CFSAN001082_15300
NZ_APAH01000294.1	Protein Homology	CDS	345	797	.	+	0	ID=cds-WP_000583455.1;Parent=gene-CFSAN001082_RS38965;Dbxref=GenBank:WP_000583455.1;Name=WP_000583455.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463328.1;locus_tag=CFSAN001082_RS38965;product=YhcH/YjgK/YiaL family protein;protein_id=WP_000583455.1;transl_table=11
NZ_APAH01000294.1	RefSeq	gene	871	1875	.	-	.	ID=gene-CFSAN001082_RS38970;Name=argF;gbkey=Gene;gene=argF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38970;old_locus_tag=CFSAN001082_15305
NZ_APAH01000294.1	Protein Homology	CDS	871	1875	.	-	0	ID=cds-WP_000103041.1;Parent=gene-CFSAN001082_RS38970;Dbxref=GenBank:WP_000103041.1;Name=WP_000103041.1;Ontology_term=GO:0042450,GO:0004585;gbkey=CDS;gene=argF;go_function=ornithine carbamoyltransferase activity|0004585||IEA;go_process=arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463329.1;locus_tag=CFSAN001082_RS38970;product=ornithine carbamoyltransferase;protein_id=WP_000103041.1;transl_table=11
NZ_APAH01000294.1	RefSeq	gene	1845	2024	.	-	.	ID=gene-CFSAN001082_RS49255;Name=argL;gbkey=Gene;gene=argL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49255
NZ_APAH01000294.1	Protein Homology	CDS	1845	2024	.	-	0	ID=cds-WP_371045364.1;Parent=gene-CFSAN001082_RS49255;Dbxref=GenBank:WP_371045364.1;Name=WP_371045364.1;gbkey=CDS;gene=argL;inference=COORDINATES: protein motif:HMM:NF047283.2;locus_tag=CFSAN001082_RS49255;product=putative translational regulatory protein ArgL;protein_id=WP_371045364.1;transl_table=11
NZ_APAH01000294.1	RefSeq	gene	2041	2457	.	+	.	ID=gene-CFSAN001082_RS38975;Name=rraB;gbkey=Gene;gene=rraB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38975;old_locus_tag=CFSAN001082_15310
NZ_APAH01000294.1	Protein Homology	CDS	2041	2457	.	+	0	ID=cds-WP_000002940.1;Parent=gene-CFSAN001082_RS38975;Dbxref=GenBank:WP_000002940.1;Name=WP_000002940.1;gbkey=CDS;gene=rraB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463330.1;locus_tag=CFSAN001082_RS38975;product=ribonuclease E inhibitor RraB;protein_id=WP_000002940.1;transl_table=11
NZ_APAH01000294.1	RefSeq	gene	2469	3281	.	+	.	ID=gene-CFSAN001082_RS38980;Name=miaE;gbkey=Gene;gene=miaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38980;old_locus_tag=CFSAN001082_15315
NZ_APAH01000294.1	Protein Homology	CDS	2469	3281	.	+	0	ID=cds-WP_000218451.1;Parent=gene-CFSAN001082_RS38980;Dbxref=GenBank:WP_000218451.1;Name=WP_000218451.1;Ontology_term=GO:0006400,GO:0004497,GO:0045301,GO:0046872;gbkey=CDS;gene=miaE;go_function=monooxygenase activity|0004497||IEA,tRNA-(2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine)-hydroxylase activity|0045301||IEA,metal ion binding|0046872||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463331.1;locus_tag=CFSAN001082_RS38980;product=tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE;protein_id=WP_000218451.1;transl_table=11
NZ_APAH01000294.1	RefSeq	gene	3515	4003	.	-	.	ID=gene-CFSAN001082_RS38985;Name=CFSAN001082_RS38985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38985;old_locus_tag=CFSAN001082_15320
NZ_APAH01000294.1	Protein Homology	CDS	3515	4003	.	-	0	ID=cds-WP_000826193.1;Parent=gene-CFSAN001082_RS38985;Dbxref=GenBank:WP_000826193.1;Name=WP_000826193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463332.1;locus_tag=CFSAN001082_RS38985;product=DUF3617 domain-containing protein;protein_id=WP_000826193.1;transl_table=11
NZ_APAH01000294.1	RefSeq	gene	4110	4613	.	-	.	ID=gene-CFSAN001082_RS38990;Name=CFSAN001082_RS38990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38990;old_locus_tag=CFSAN001082_15325
NZ_APAH01000294.1	Protein Homology	CDS	4110	4613	.	-	0	ID=cds-WP_001519079.1;Parent=gene-CFSAN001082_RS38990;Dbxref=GenBank:WP_001519079.1;Name=WP_001519079.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463333.1;locus_tag=CFSAN001082_RS38990;product=GNAT family N-acetyltransferase;protein_id=WP_001519079.1;transl_table=11
##sequence-region NZ_APAH01000295.1 1 254
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000295.1	RefSeq	region	1	254	.	+	.	ID=NZ_APAH01000295.1:1..254;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000296.1 1 16850
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000296.1	RefSeq	region	1	16850	.	+	.	ID=NZ_APAH01000296.1:1..16850;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000296.1	RefSeq	gene	1	3456	.	-	.	ID=gene-CFSAN001082_RS38995;Name=nifJ;gbkey=Gene;gene=nifJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS38995;old_locus_tag=CFSAN001082_15330;partial=true;start_range=.,1
NZ_APAH01000296.1	Protein Homology	CDS	1	3456	.	-	0	ID=cds-WP_023254540.1;Parent=gene-CFSAN001082_RS38995;Dbxref=GenBank:WP_023254540.1;Name=WP_023254540.1;Ontology_term=GO:0022900,GO:0005506,GO:0016903,GO:0030976;gbkey=CDS;gene=nifJ;go_function=iron ion binding|0005506||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors|0016903||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460610.1;locus_tag=CFSAN001082_RS38995;partial=true;product=pyruvate:ferredoxin (flavodoxin) oxidoreductase;protein_id=WP_023254540.1;start_range=.,1;transl_table=11
NZ_APAH01000296.1	RefSeq	gene	3517	3828	.	-	.	ID=gene-CFSAN001082_RS47960;Name=CFSAN001082_RS47960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47960
NZ_APAH01000296.1	Protein Homology	CDS	3517	3828	.	-	0	ID=cds-WP_031612939.1;Parent=gene-CFSAN001082_RS47960;Dbxref=GenBank:WP_031612939.1;Name=WP_031612939.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460609.1;locus_tag=CFSAN001082_RS47960;product=hypothetical protein;protein_id=WP_031612939.1;transl_table=11
NZ_APAH01000296.1	RefSeq	gene	3732	3998	.	+	.	ID=gene-CFSAN001082_RS39000;Name=CFSAN001082_RS39000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39000;old_locus_tag=CFSAN001082_15340
NZ_APAH01000296.1	Protein Homology	CDS	3732	3998	.	+	0	ID=cds-WP_001200679.1;Parent=gene-CFSAN001082_RS39000;Dbxref=GenBank:WP_001200679.1;Name=WP_001200679.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588453.1;locus_tag=CFSAN001082_RS39000;product=putative hemolysin;protein_id=WP_001200679.1;transl_table=11
NZ_APAH01000296.1	RefSeq	gene	4042	4452	.	-	.	ID=gene-CFSAN001082_RS39005;Name=hslJ;gbkey=Gene;gene=hslJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39005;old_locus_tag=CFSAN001082_15345
NZ_APAH01000296.1	Protein Homology	CDS	4042	4452	.	-	0	ID=cds-WP_000725238.1;Parent=gene-CFSAN001082_RS39005;Dbxref=GenBank:WP_000725238.1;Name=WP_000725238.1;gbkey=CDS;gene=hslJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460607.1;locus_tag=CFSAN001082_RS39005;product=heat shock protein HslJ;protein_id=WP_000725238.1;transl_table=11
NZ_APAH01000296.1	RefSeq	gene	4563	5552	.	-	.	ID=gene-CFSAN001082_RS39010;Name=ldhA;gbkey=Gene;gene=ldhA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39010;old_locus_tag=CFSAN001082_15350
NZ_APAH01000296.1	Protein Homology	CDS	4563	5552	.	-	0	ID=cds-WP_000762206.1;Parent=gene-CFSAN001082_RS39010;Dbxref=GenBank:WP_000762206.1;Name=WP_000762206.1;gbkey=CDS;gene=ldhA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460606.1;locus_tag=CFSAN001082_RS39010;product=D-lactate dehydrogenase;protein_id=WP_000762206.1;transl_table=11
NZ_APAH01000296.1	RefSeq	gene	5819	8455	.	+	.	ID=gene-CFSAN001082_RS39015;Name=CFSAN001082_RS39015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39015;old_locus_tag=CFSAN001082_15355
NZ_APAH01000296.1	Protein Homology	CDS	5819	8455	.	+	0	ID=cds-WP_017441309.1;Parent=gene-CFSAN001082_RS39015;Dbxref=GenBank:WP_017441309.1;Name=WP_017441309.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460605.1;locus_tag=CFSAN001082_RS39015;product=YdbH family protein;protein_id=WP_017441309.1;transl_table=11
NZ_APAH01000296.1	RefSeq	gene	8455	8646	.	+	.	ID=gene-CFSAN001082_RS39020;Name=CFSAN001082_RS39020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39020;old_locus_tag=CFSAN001082_15360
NZ_APAH01000296.1	Protein Homology	CDS	8455	8646	.	+	0	ID=cds-WP_000784063.1;Parent=gene-CFSAN001082_RS39020;Dbxref=GenBank:WP_000784063.1;Name=WP_000784063.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460604.1;locus_tag=CFSAN001082_RS39020;product=YnbE family lipoprotein;protein_id=WP_000784063.1;transl_table=11
NZ_APAH01000296.1	RefSeq	gene	8654	8977	.	+	.	ID=gene-CFSAN001082_RS39025;Name=CFSAN001082_RS39025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39025;old_locus_tag=CFSAN001082_15365
NZ_APAH01000296.1	Protein Homology	CDS	8654	8977	.	+	0	ID=cds-WP_023254542.1;Parent=gene-CFSAN001082_RS39025;Dbxref=GenBank:WP_023254542.1;Name=WP_023254542.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460603.1;locus_tag=CFSAN001082_RS39025;product=YdbL family protein;protein_id=WP_023254542.1;transl_table=11
NZ_APAH01000296.1	RefSeq	gene	9120	9569	.	+	.	ID=gene-CFSAN001082_RS39030;Name=CFSAN001082_RS39030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39030;old_locus_tag=CFSAN001082_15370
NZ_APAH01000296.1	Protein Homology	CDS	9120	9569	.	+	0	ID=cds-WP_023254543.1;Parent=gene-CFSAN001082_RS39030;Dbxref=GenBank:WP_023254543.1;Name=WP_023254543.1;Ontology_term=GO:0016846,GO:0046872;gbkey=CDS;go_function=carbon-sulfur lyase activity|0016846||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460602.1;locus_tag=CFSAN001082_RS39030;product=GFA family protein;protein_id=WP_023254543.1;transl_table=11
NZ_APAH01000296.1	RefSeq	gene	9566	10171	.	-	.	ID=gene-CFSAN001082_RS39035;Name=azoR;gbkey=Gene;gene=azoR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39035;old_locus_tag=CFSAN001082_15375
NZ_APAH01000296.1	Protein Homology	CDS	9566	10171	.	-	0	ID=cds-WP_023254544.1;Parent=gene-CFSAN001082_RS39035;Dbxref=GenBank:WP_023254544.1;Name=WP_023254544.1;gbkey=CDS;gene=azoR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460601.1;locus_tag=CFSAN001082_RS39035;product=FMN-dependent NADH-azoreductase;protein_id=WP_023254544.1;transl_table=11
NZ_APAH01000296.1	RefSeq	gene	10372	14274	.	+	.	ID=gene-CFSAN001082_RS39040;Name=hrpA;gbkey=Gene;gene=hrpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39040;old_locus_tag=CFSAN001082_15380
NZ_APAH01000296.1	Protein Homology	CDS	10372	14274	.	+	0	ID=cds-WP_024150309.1;Parent=gene-CFSAN001082_RS39040;Dbxref=GenBank:WP_024150309.1;Name=WP_024150309.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=hrpA;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460600.3;locus_tag=CFSAN001082_RS39040;product=ATP-dependent RNA helicase HrpA;protein_id=WP_024150309.1;transl_table=11
NZ_APAH01000296.1	RefSeq	gene	14338	15138	.	+	.	ID=gene-CFSAN001082_RS39045;Name=CFSAN001082_RS39045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39045;old_locus_tag=CFSAN001082_15385
NZ_APAH01000296.1	Protein Homology	CDS	14338	15138	.	+	0	ID=cds-WP_001098507.1;Parent=gene-CFSAN001082_RS39045;Dbxref=GenBank:WP_001098507.1;Name=WP_001098507.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460599.1;locus_tag=CFSAN001082_RS39045;product=YdcF family protein;protein_id=WP_001098507.1;transl_table=11
NZ_APAH01000296.1	RefSeq	gene	15255	15785	.	+	.	ID=gene-CFSAN001082_RS39050;Name=cybB;gbkey=Gene;gene=cybB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39050;old_locus_tag=CFSAN001082_15390
NZ_APAH01000296.1	Protein Homology	CDS	15255	15785	.	+	0	ID=cds-WP_000527277.1;Parent=gene-CFSAN001082_RS39050;Dbxref=GenBank:WP_000527277.1;Name=WP_000527277.1;Ontology_term=GO:0022904,GO:0009055,GO:0016020;gbkey=CDS;gene=cybB;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460598.1;locus_tag=CFSAN001082_RS39050;product=cytochrome b561;protein_id=WP_000527277.1;transl_table=11
NZ_APAH01000296.1	RefSeq	gene	16056	16718	.	-	.	ID=gene-CFSAN001082_RS39055;Name=CFSAN001082_RS39055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39055;old_locus_tag=CFSAN001082_15395
NZ_APAH01000296.1	Protein Homology	CDS	16056	16718	.	-	0	ID=cds-WP_023254546.1;Parent=gene-CFSAN001082_RS39055;Dbxref=GenBank:WP_023254546.1;Name=WP_023254546.1;Ontology_term=GO:0008168,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001576082.1;locus_tag=CFSAN001082_RS39055;product=class I SAM-dependent methyltransferase;protein_id=WP_023254546.1;transl_table=11
##sequence-region NZ_APAH01000297.1 1 29852
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000297.1	RefSeq	region	1	29852	.	+	.	ID=NZ_APAH01000297.1:1..29852;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000297.1	RefSeq	gene	12	611	.	+	.	ID=gene-CFSAN001082_RS39060;Name=CFSAN001082_RS39060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39060;old_locus_tag=CFSAN001082_15400
NZ_APAH01000297.1	Protein Homology	CDS	12	611	.	+	0	ID=cds-WP_000716750.1;Parent=gene-CFSAN001082_RS39060;Dbxref=GenBank:WP_000716750.1;Name=WP_000716750.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460854.1;locus_tag=CFSAN001082_RS39060;product=YebB family permuted papain-like enzyme;protein_id=WP_000716750.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	613	1134	.	-	.	ID=gene-CFSAN001082_RS39065;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39065;old_locus_tag=CFSAN001082_15405
NZ_APAH01000297.1	Protein Homology	CDS	613	1134	.	-	0	ID=cds-WP_000022509.1;Parent=gene-CFSAN001082_RS39065;Dbxref=GenBank:WP_000022509.1;Name=WP_000022509.1;Ontology_term=GO:0006310,GO:0008821;gbkey=CDS;gene=ruvC;go_function=crossover junction DNA endonuclease activity|0008821||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005068993.1;locus_tag=CFSAN001082_RS39065;product=crossover junction endodeoxyribonuclease RuvC;protein_id=WP_000022509.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	1171	1911	.	-	.	ID=gene-CFSAN001082_RS39070;Name=CFSAN001082_RS39070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39070;old_locus_tag=CFSAN001082_15410
NZ_APAH01000297.1	Protein Homology	CDS	1171	1911	.	-	0	ID=cds-WP_000907242.1;Parent=gene-CFSAN001082_RS39070;Dbxref=GenBank:WP_000907242.1;Name=WP_000907242.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000907250.1;locus_tag=CFSAN001082_RS39070;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=WP_000907242.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	1941	2393	.	-	.	ID=gene-CFSAN001082_RS39075;Name=nudB;gbkey=Gene;gene=nudB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39075;old_locus_tag=CFSAN001082_15415
NZ_APAH01000297.1	Protein Homology	CDS	1941	2393	.	-	0	ID=cds-WP_000653693.1;Parent=gene-CFSAN001082_RS39075;Dbxref=GenBank:WP_000653693.1;Name=WP_000653693.1;Ontology_term=GO:0046656,GO:0008828,GO:0019177;gbkey=CDS;gene=nudB;go_function=dATP diphosphatase activity|0008828||IEA,dihydroneopterin triphosphate pyrophosphohydrolase activity|0019177||IEA;go_process=folic acid biosynthetic process|0046656||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460857.1;locus_tag=CFSAN001082_RS39075;product=dihydroneopterin triphosphate diphosphatase;protein_id=WP_000653693.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	2496	4268	.	-	.	ID=gene-CFSAN001082_RS39080;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39080;old_locus_tag=CFSAN001082_15420
NZ_APAH01000297.1	Protein Homology	CDS	2496	4268	.	-	0	ID=cds-WP_023254548.1;Parent=gene-CFSAN001082_RS39080;Dbxref=GenBank:WP_023254548.1;Name=WP_023254548.1;Ontology_term=GO:0006422,GO:0004815,GO:0005524,GO:0005737;gbkey=CDS;gene=aspS;go_component=cytoplasm|0005737||IEA;go_function=aspartate-tRNA ligase activity|0004815||IEA,ATP binding|0005524||IEA;go_process=aspartyl-tRNA aminoacylation|0006422||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460858.1;locus_tag=CFSAN001082_RS39080;product=aspartate--tRNA ligase;protein_id=WP_023254548.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	4593	5159	.	+	.	ID=gene-CFSAN001082_RS39085;Name=CFSAN001082_RS39085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39085;old_locus_tag=CFSAN001082_15425
NZ_APAH01000297.1	Protein Homology	CDS	4593	5159	.	+	0	ID=cds-WP_000916144.1;Parent=gene-CFSAN001082_RS39085;Dbxref=GenBank:WP_000916144.1;Name=WP_000916144.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460859.1;locus_tag=CFSAN001082_RS39085;product=hydrolase;protein_id=WP_000916144.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	5156	5974	.	+	.	ID=gene-CFSAN001082_RS39090;Name=CFSAN001082_RS39090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39090;old_locus_tag=CFSAN001082_15430
NZ_APAH01000297.1	Protein Homology	CDS	5156	5974	.	+	0	ID=cds-WP_000639226.1;Parent=gene-CFSAN001082_RS39090;Dbxref=GenBank:WP_000639226.1;Name=WP_000639226.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460860.1;locus_tag=CFSAN001082_RS39090;product=DUF72 domain-containing protein;protein_id=WP_000639226.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	6027	6422	.	+	.	ID=gene-CFSAN001082_RS39095;Name=CFSAN001082_RS39095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39095;old_locus_tag=CFSAN001082_15435
NZ_APAH01000297.1	Protein Homology	CDS	6027	6422	.	+	0	ID=cds-WP_000252975.1;Parent=gene-CFSAN001082_RS39095;Dbxref=GenBank:WP_000252975.1;Name=WP_000252975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460861.1;locus_tag=CFSAN001082_RS39095;product=MAPEG family protein;protein_id=WP_000252975.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	6463	7206	.	+	.	ID=gene-CFSAN001082_RS39100;Name=cmoA;gbkey=Gene;gene=cmoA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39100;old_locus_tag=CFSAN001082_15440
NZ_APAH01000297.1	Protein Homology	CDS	6463	7206	.	+	0	ID=cds-WP_000019609.1;Parent=gene-CFSAN001082_RS39100;Dbxref=GenBank:WP_000019609.1;Name=WP_000019609.1;gbkey=CDS;gene=cmoA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460862.1;locus_tag=CFSAN001082_RS39100;product=carboxy-S-adenosyl-L-methionine synthase CmoA;protein_id=WP_000019609.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	7203	8174	.	+	.	ID=gene-CFSAN001082_RS39105;Name=cmoB;gbkey=Gene;gene=cmoB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39105;old_locus_tag=CFSAN001082_15445
NZ_APAH01000297.1	Protein Homology	CDS	7203	8174	.	+	0	ID=cds-WP_001648733.1;Parent=gene-CFSAN001082_RS39105;Dbxref=GenBank:WP_001648733.1;Name=WP_001648733.1;Ontology_term=GO:0002098,GO:0016765;gbkey=CDS;gene=cmoB;go_function=transferase activity%2C transferring alkyl or aryl (other than methyl) groups|0016765||IEA;go_process=tRNA wobble uridine modification|0002098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460863.1;locus_tag=CFSAN001082_RS39105;product=tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB;protein_id=WP_001648733.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	8410	9156	.	-	.	ID=gene-CFSAN001082_RS39110;Name=cutC;gbkey=Gene;gene=cutC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39110;old_locus_tag=CFSAN001082_15450
NZ_APAH01000297.1	Protein Homology	CDS	8410	9156	.	-	0	ID=cds-WP_001185780.1;Parent=gene-CFSAN001082_RS39110;Dbxref=GenBank:WP_001185780.1;Name=WP_001185780.1;Ontology_term=GO:0055070,GO:0005507;gbkey=CDS;gene=cutC;go_function=copper ion binding|0005507||IEA;go_process=copper ion homeostasis|0055070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460864.1;locus_tag=CFSAN001082_RS39110;product=copper homeostasis protein CutC;protein_id=WP_001185780.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	9176	9745	.	-	.	ID=gene-CFSAN001082_RS39115;Name=CFSAN001082_RS39115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39115;old_locus_tag=CFSAN001082_15455
NZ_APAH01000297.1	Protein Homology	CDS	9176	9745	.	-	0	ID=cds-WP_000024796.1;Parent=gene-CFSAN001082_RS39115;Dbxref=GenBank:WP_000024796.1;Name=WP_000024796.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460865.1;locus_tag=CFSAN001082_RS39115;product=VOC family protein;protein_id=WP_000024796.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	9982	11715	.	+	.	ID=gene-CFSAN001082_RS39120;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39120;old_locus_tag=CFSAN001082_15460
NZ_APAH01000297.1	Protein Homology	CDS	9982	11715	.	+	0	ID=cds-WP_001025365.1;Parent=gene-CFSAN001082_RS39120;Dbxref=GenBank:WP_001025365.1;Name=WP_001025365.1;Ontology_term=GO:0006420,GO:0004814,GO:0005524,GO:0005737;gbkey=CDS;gene=argS;go_component=cytoplasm|0005737||IEA;go_function=arginine-tRNA ligase activity|0004814||IEA,ATP binding|0005524||IEA;go_process=arginyl-tRNA aminoacylation|0006420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001025321.1;locus_tag=CFSAN001082_RS39120;product=arginine--tRNA ligase;protein_id=WP_001025365.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	11904	13775	.	+	.	ID=gene-CFSAN001082_RS39125;Name=mrdA;gbkey=Gene;gene=mrdA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39125;old_locus_tag=CFSAN001082_15465
NZ_APAH01000297.1	Protein Homology	CDS	11904	13775	.	+	0	ID=cds-WP_023254549.1;Parent=gene-CFSAN001082_RS39125;Dbxref=GenBank:WP_023254549.1;Name=WP_023254549.1;Ontology_term=GO:0009252,GO:0003824,GO:0008658,GO:0016020;gbkey=CDS;gene=mrdA;go_component=membrane|0016020||IEA;go_function=catalytic activity|0003824||IEA,penicillin binding|0008658||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460867.1;locus_tag=CFSAN001082_RS39125;product=penicillin-binding protein 2;protein_id=WP_023254549.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	13829	14968	.	-	.	ID=gene-CFSAN001082_RS39130;Name=CFSAN001082_RS39130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39130;old_locus_tag=CFSAN001082_15470
NZ_APAH01000297.1	Protein Homology	CDS	13829	14968	.	-	0	ID=cds-WP_023254550.1;Parent=gene-CFSAN001082_RS39130;Dbxref=GenBank:WP_023254550.1;Name=WP_023254550.1;Ontology_term=GO:0005975,GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460868.1;locus_tag=CFSAN001082_RS39130;product=glycoside hydrolase family 88/105 protein;protein_id=WP_023254550.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	15205	15597	.	-	.	ID=gene-CFSAN001082_RS39135;Name=flhE;gbkey=Gene;gene=flhE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39135;old_locus_tag=CFSAN001082_15475
NZ_APAH01000297.1	Protein Homology	CDS	15205	15597	.	-	0	ID=cds-WP_001233619.1;Parent=gene-CFSAN001082_RS39135;Dbxref=GenBank:WP_001233619.1;Name=WP_001233619.1;Ontology_term=GO:0044781;gbkey=CDS;gene=flhE;go_process=bacterial-type flagellum organization|0044781||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460869.1;locus_tag=CFSAN001082_RS39135;product=flagellar protein FlhE;protein_id=WP_001233619.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	15597	17675	.	-	.	ID=gene-CFSAN001082_RS39140;Name=flhA;gbkey=Gene;gene=flhA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39140;old_locus_tag=CFSAN001082_15480
NZ_APAH01000297.1	Protein Homology	CDS	15597	17675	.	-	0	ID=cds-WP_000002386.1;Parent=gene-CFSAN001082_RS39140;Dbxref=GenBank:WP_000002386.1;Name=WP_000002386.1;Ontology_term=GO:0044780,GO:0016020;gbkey=CDS;gene=flhA;go_component=membrane|0016020||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460870.1;locus_tag=CFSAN001082_RS39140;product=flagellar biosynthesis protein FlhA;protein_id=WP_000002386.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	17668	18819	.	-	.	ID=gene-CFSAN001082_RS39145;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39145;old_locus_tag=CFSAN001082_15485
NZ_APAH01000297.1	Protein Homology	CDS	17668	18819	.	-	0	ID=cds-WP_000797084.1;Parent=gene-CFSAN001082_RS39145;Dbxref=GenBank:WP_000797084.1;Name=WP_000797084.1;Ontology_term=GO:0015031,GO:0044780,GO:0016020;gbkey=CDS;gene=flhB;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460871.1;locus_tag=CFSAN001082_RS39145;product=flagellar biosynthesis protein FlhB;protein_id=WP_000797084.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	19013	19657	.	-	.	ID=gene-CFSAN001082_RS39150;Name=cheZ;gbkey=Gene;gene=cheZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39150;old_locus_tag=CFSAN001082_15490
NZ_APAH01000297.1	Protein Homology	CDS	19013	19657	.	-	0	ID=cds-WP_000983586.1;Parent=gene-CFSAN001082_RS39150;Dbxref=GenBank:WP_000983586.1;Name=WP_000983586.1;Ontology_term=GO:0050920,GO:0003824;gbkey=CDS;gene=cheZ;go_function=catalytic activity|0003824||IEA;go_process=regulation of chemotaxis|0050920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460872.1;locus_tag=CFSAN001082_RS39150;product=protein phosphatase CheZ;protein_id=WP_000983586.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	19668	20057	.	-	.	ID=gene-CFSAN001082_RS39155;Name=cheY;gbkey=Gene;gene=cheY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39155;old_locus_tag=CFSAN001082_15495
NZ_APAH01000297.1	Protein Homology	CDS	19668	20057	.	-	0	ID=cds-WP_000763861.1;Parent=gene-CFSAN001082_RS39155;Dbxref=GenBank:WP_000763861.1;Name=WP_000763861.1;Ontology_term=GO:0000160;gbkey=CDS;gene=cheY;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002210873.1;locus_tag=CFSAN001082_RS39155;product=chemotaxis response regulator CheY;protein_id=WP_000763861.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	20075	21124	.	-	.	ID=gene-CFSAN001082_RS39160;Name=cheB;gbkey=Gene;gene=cheB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39160;old_locus_tag=CFSAN001082_15500
NZ_APAH01000297.1	Protein Homology	CDS	20075	21124	.	-	0	ID=cds-WP_000036389.1;Parent=gene-CFSAN001082_RS39160;Dbxref=GenBank:WP_000036389.1;Name=WP_000036389.1;gbkey=CDS;gene=cheB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000036372.1;locus_tag=CFSAN001082_RS39160;product=protein-glutamate methylesterase/protein glutamine deamidase;protein_id=WP_000036389.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	21121	21987	.	-	.	ID=gene-CFSAN001082_RS39165;Name=cheR;gbkey=Gene;gene=cheR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39165;old_locus_tag=CFSAN001082_15505
NZ_APAH01000297.1	Protein Homology	CDS	21121	21987	.	-	0	ID=cds-WP_023254551.1;Parent=gene-CFSAN001082_RS39165;Dbxref=GenBank:WP_023254551.1;Name=WP_023254551.1;Ontology_term=GO:0008757;gbkey=CDS;gene=cheR;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460875.1;locus_tag=CFSAN001082_RS39165;product=protein-glutamate O-methyltransferase CheR;protein_id=WP_023254551.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	22141	23802	.	-	.	ID=gene-CFSAN001082_RS39170;Name=tar;gbkey=Gene;gene=tar;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39170;old_locus_tag=CFSAN001082_15510
NZ_APAH01000297.1	Protein Homology	CDS	22141	23802	.	-	0	ID=cds-WP_000483279.1;Parent=gene-CFSAN001082_RS39170;Dbxref=GenBank:WP_000483279.1;Name=WP_000483279.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0016020;gbkey=CDS;gene=tar;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460876.1;locus_tag=CFSAN001082_RS39170;product=methyl-accepting chemotaxis protein II;protein_id=WP_000483279.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	24039	24542	.	-	.	ID=gene-CFSAN001082_RS39175;Name=cheW;gbkey=Gene;gene=cheW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39175;old_locus_tag=CFSAN001082_15515
NZ_APAH01000297.1	Protein Homology	CDS	24039	24542	.	-	0	ID=cds-WP_023254552.1;Parent=gene-CFSAN001082_RS39175;Dbxref=GenBank:WP_023254552.1;Name=WP_023254552.1;gbkey=CDS;gene=cheW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460877.1;locus_tag=CFSAN001082_RS39175;product=chemotaxis protein CheW;protein_id=WP_023254552.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	24563	26578	.	-	.	ID=gene-CFSAN001082_RS39180;Name=cheA;gbkey=Gene;gene=cheA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39180;old_locus_tag=CFSAN001082_15520
NZ_APAH01000297.1	Protein Homology	CDS	24563	26578	.	-	0	ID=cds-WP_023254553.1;Parent=gene-CFSAN001082_RS39180;Dbxref=GenBank:WP_023254553.1;Name=WP_023254553.1;Ontology_term=GO:0000160,GO:0006935,GO:0016310,GO:0000155;gbkey=CDS;gene=cheA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,chemotaxis|0006935||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460878.1;locus_tag=CFSAN001082_RS39180;product=chemotaxis protein CheA;protein_id=WP_023254553.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	26583	27512	.	-	.	ID=gene-CFSAN001082_RS39185;Name=motB;gbkey=Gene;gene=motB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39185;old_locus_tag=CFSAN001082_15525
NZ_APAH01000297.1	Protein Homology	CDS	26583	27512	.	-	0	ID=cds-WP_000795653.1;Parent=gene-CFSAN001082_RS39185;Dbxref=GenBank:WP_000795653.1;Name=WP_000795653.1;gbkey=CDS;gene=motB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460879.1;locus_tag=CFSAN001082_RS39185;product=flagellar motor protein MotB;protein_id=WP_000795653.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	27509	28396	.	-	.	ID=gene-CFSAN001082_RS39190;Name=motA;gbkey=Gene;gene=motA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39190;old_locus_tag=CFSAN001082_15530
NZ_APAH01000297.1	Protein Homology	CDS	27509	28396	.	-	0	ID=cds-WP_000906312.1;Parent=gene-CFSAN001082_RS39190;Dbxref=GenBank:WP_000906312.1;Name=WP_000906312.1;gbkey=CDS;gene=motA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460880.1;locus_tag=CFSAN001082_RS39190;product=flagellar motor stator protein MotA;protein_id=WP_000906312.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	28521	29105	.	-	.	ID=gene-CFSAN001082_RS39195;Name=flhC;gbkey=Gene;gene=flhC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39195;old_locus_tag=CFSAN001082_15535
NZ_APAH01000297.1	Protein Homology	CDS	28521	29105	.	-	0	ID=cds-WP_000605987.1;Parent=gene-CFSAN001082_RS39195;Dbxref=GenBank:WP_000605987.1;Name=WP_000605987.1;Ontology_term=GO:0045893,GO:1902208,GO:0003677;gbkey=CDS;gene=flhC;go_function=DNA binding|0003677||IEA;go_process=positive regulation of DNA-templated transcription|0045893||IEA,regulation of bacterial-type flagellum assembly|1902208||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460881.3;locus_tag=CFSAN001082_RS39195;product=flagellar transcriptional regulator FlhC;protein_id=WP_000605987.1;transl_table=11
NZ_APAH01000297.1	RefSeq	gene	29102	29443	.	-	.	ID=gene-CFSAN001082_RS39200;Name=flhD;gbkey=Gene;gene=flhD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39200;old_locus_tag=CFSAN001082_15540
NZ_APAH01000297.1	Protein Homology	CDS	29102	29443	.	-	0	ID=cds-WP_001518146.1;Parent=gene-CFSAN001082_RS39200;Dbxref=GenBank:WP_001518146.1;Name=WP_001518146.1;Ontology_term=GO:0045893,GO:1902208,GO:0003677;gbkey=CDS;gene=flhD;go_function=DNA binding|0003677||IEA;go_process=positive regulation of DNA-templated transcription|0045893||IEA,regulation of bacterial-type flagellum assembly|1902208||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310629.2;locus_tag=CFSAN001082_RS39200;product=flagellar transcriptional regulator FlhD;protein_id=WP_001518146.1;transl_table=11
##sequence-region NZ_APAH01000298.1 1 204
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000298.1	RefSeq	region	1	204	.	+	.	ID=NZ_APAH01000298.1:1..204;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000298.1	RefSeq	gene	1	204	.	-	.	ID=gene-CFSAN001082_RS39205;Name=CFSAN001082_RS39205;end_range=204,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39205;old_locus_tag=CFSAN001082_15545;partial=true;start_range=.,1
NZ_APAH01000298.1	Protein Homology	CDS	1	204	.	-	0	ID=cds-WP_023254554.1;Parent=gene-CFSAN001082_RS39205;Dbxref=GenBank:WP_023254554.1;Name=WP_023254554.1;end_range=204,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835222.1;locus_tag=CFSAN001082_RS39205;partial=true;product=DUF4765 family protein;protein_id=WP_023254554.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000299.1 1 6214
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000299.1	RefSeq	region	1	6214	.	+	.	ID=NZ_APAH01000299.1:1..6214;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000299.1	RefSeq	gene	113	1339	.	+	.	ID=gene-CFSAN001082_RS39210;Name=CFSAN001082_RS39210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39210;old_locus_tag=CFSAN001082_15550
NZ_APAH01000299.1	Protein Homology	CDS	113	1339	.	+	0	ID=cds-WP_000471815.1;Parent=gene-CFSAN001082_RS39210;Dbxref=GenBank:WP_000471815.1;Name=WP_000471815.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460347.1;locus_tag=CFSAN001082_RS39210;product=PfkB family carbohydrate kinase;protein_id=WP_000471815.1;transl_table=11
NZ_APAH01000299.1	RefSeq	gene	1351	2088	.	+	.	ID=gene-CFSAN001082_RS39215;Name=CFSAN001082_RS39215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39215;old_locus_tag=CFSAN001082_15555
NZ_APAH01000299.1	Protein Homology	CDS	1351	2088	.	+	0	ID=cds-WP_000697187.1;Parent=gene-CFSAN001082_RS39215;Dbxref=GenBank:WP_000697187.1;Name=WP_000697187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460346.1;locus_tag=CFSAN001082_RS39215;product=glutamine amidotransferase;protein_id=WP_000697187.1;transl_table=11
NZ_APAH01000299.1	RefSeq	gene	2147	3040	.	+	.	ID=gene-CFSAN001082_RS39220;Name=CFSAN001082_RS39220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39220;old_locus_tag=CFSAN001082_15560
NZ_APAH01000299.1	Protein Homology	CDS	2147	3040	.	+	0	ID=cds-WP_001000508.1;Parent=gene-CFSAN001082_RS39220;Dbxref=GenBank:WP_001000508.1;Name=WP_001000508.1;Ontology_term=GO:0006508,GO:0008233;gbkey=CDS;go_function=peptidase activity|0008233||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460345.1;locus_tag=CFSAN001082_RS39220;product=proline iminopeptidase-family hydrolase;protein_id=WP_001000508.1;transl_table=11
NZ_APAH01000299.1	RefSeq	gene	3062	4405	.	+	.	ID=gene-CFSAN001082_RS39225;Name=CFSAN001082_RS39225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39225;old_locus_tag=CFSAN001082_15565
NZ_APAH01000299.1	Protein Homology	CDS	3062	4405	.	+	0	ID=cds-WP_000756097.1;Parent=gene-CFSAN001082_RS39225;Dbxref=GenBank:WP_000756097.1;Name=WP_000756097.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460344.1;locus_tag=CFSAN001082_RS39225;product=APC family permease;protein_id=WP_000756097.1;transl_table=11
NZ_APAH01000299.1	RefSeq	gene	4569	4799	.	+	.	ID=gene-CFSAN001082_RS49260;Name=CFSAN001082_RS49260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49260
NZ_APAH01000299.1	Protein Homology	CDS	4569	4799	.	+	0	ID=cds-WP_418143684.1;Parent=gene-CFSAN001082_RS49260;Dbxref=GenBank:WP_418143684.1;Name=WP_418143684.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049534.1;locus_tag=CFSAN001082_RS49260;product=hypothetical protein;protein_id=WP_418143684.1;transl_table=11
NZ_APAH01000299.1	RefSeq	gene	4807	6214	.	+	.	ID=gene-CFSAN001082_RS39230;Name=pykF;end_range=6214,.;gbkey=Gene;gene=pykF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39230;old_locus_tag=CFSAN001082_15570;partial=true
NZ_APAH01000299.1	Protein Homology	CDS	4807	6214	.	+	0	ID=cds-WP_023254555.1;Parent=gene-CFSAN001082_RS39230;Dbxref=GenBank:WP_023254555.1;Name=WP_023254555.1;Ontology_term=GO:0006096,GO:0004743;end_range=6214,.;gbkey=CDS;gene=pykF;go_function=pyruvate kinase activity|0004743||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010346010.1;locus_tag=CFSAN001082_RS39230;partial=true;product=pyruvate kinase PykF;protein_id=WP_023254555.1;transl_table=11
##sequence-region NZ_APAH01000300.1 1 29939
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000300.1	RefSeq	region	1	29939	.	+	.	ID=NZ_APAH01000300.1:1..29939;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000300.1	RefSeq	gene	1	503	.	-	.	ID=gene-CFSAN001082_RS39235;Name=CFSAN001082_RS39235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39235;old_locus_tag=CFSAN001082_15575;partial=true;start_range=.,1
NZ_APAH01000300.1	Protein Homology	CDS	1	503	.	-	0	ID=cds-WP_000031735.1;Parent=gene-CFSAN001082_RS39235;Dbxref=GenBank:WP_000031735.1;Name=WP_000031735.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312217.1;locus_tag=CFSAN001082_RS39235;partial=true;product=GTP-binding protein;protein_id=WP_000031735.1;start_range=.,1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	575	2689	.	-	.	ID=gene-CFSAN001082_RS39240;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39240;old_locus_tag=CFSAN001082_15580
NZ_APAH01000300.1	Protein Homology	CDS	575	2689	.	-	0	ID=cds-WP_000124693.1;Parent=gene-CFSAN001082_RS39240;Dbxref=GenBank:WP_000124693.1;Name=WP_000124693.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;gbkey=CDS;gene=fusA;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020455498.1;locus_tag=CFSAN001082_RS39240;product=elongation factor G;protein_id=WP_000124693.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	2786	3256	.	-	.	ID=gene-CFSAN001082_RS39245;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39245;old_locus_tag=CFSAN001082_15585
NZ_APAH01000300.1	Protein Homology	CDS	2786	3256	.	-	0	ID=cds-WP_001138043.1;Parent=gene-CFSAN001082_RS39245;Dbxref=GenBank:WP_001138043.1;Name=WP_001138043.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsG;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742319.1;locus_tag=CFSAN001082_RS39245;product=30S ribosomal protein S7;protein_id=WP_001138043.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	3352	3726	.	-	.	ID=gene-CFSAN001082_RS39250;Name=rpsL;gbkey=Gene;gene=rpsL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39250;old_locus_tag=CFSAN001082_15590
NZ_APAH01000300.1	Protein Homology	CDS	3352	3726	.	-	0	ID=cds-WP_000246815.1;Parent=gene-CFSAN001082_RS39250;Dbxref=GenBank:WP_000246815.1;Name=WP_000246815.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsL;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005306278.1;locus_tag=CFSAN001082_RS39250;product=30S ribosomal protein S12;protein_id=WP_000246815.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	3852	4139	.	-	.	ID=gene-CFSAN001082_RS39255;Name=tusB;gbkey=Gene;gene=tusB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39255;old_locus_tag=CFSAN001082_15595
NZ_APAH01000300.1	Protein Homology	CDS	3852	4139	.	-	0	ID=cds-WP_000903398.1;Parent=gene-CFSAN001082_RS39255;Dbxref=GenBank:WP_000903398.1;Name=WP_000903398.1;Ontology_term=GO:0002143;gbkey=CDS;gene=tusB;go_process=tRNA wobble position uridine thiolation|0002143||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462353.1;locus_tag=CFSAN001082_RS39255;product=sulfurtransferase complex subunit TusB;protein_id=WP_000903398.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	4147	4503	.	-	.	ID=gene-CFSAN001082_RS39260;Name=tusC;gbkey=Gene;gene=tusC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39260;old_locus_tag=CFSAN001082_15600
NZ_APAH01000300.1	Protein Homology	CDS	4147	4503	.	-	0	ID=cds-WP_023254556.1;Parent=gene-CFSAN001082_RS39260;Dbxref=GenBank:WP_023254556.1;Name=WP_023254556.1;gbkey=CDS;gene=tusC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462354.1;locus_tag=CFSAN001082_RS39260;product=sulfurtransferase complex subunit TusC;protein_id=WP_023254556.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	4503	4889	.	-	.	ID=gene-CFSAN001082_RS39265;Name=tusD;gbkey=Gene;gene=tusD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39265;old_locus_tag=CFSAN001082_15605
NZ_APAH01000300.1	Protein Homology	CDS	4503	4889	.	-	0	ID=cds-WP_001268010.1;Parent=gene-CFSAN001082_RS39265;Dbxref=GenBank:WP_001268010.1;Name=WP_001268010.1;Ontology_term=GO:0008033,GO:0016783;gbkey=CDS;gene=tusD;go_function=sulfurtransferase activity|0016783||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462355.1;locus_tag=CFSAN001082_RS39265;product=sulfurtransferase complex subunit TusD;protein_id=WP_001268010.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	4889	5611	.	-	.	ID=gene-CFSAN001082_RS39270;Name=CFSAN001082_RS39270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39270;old_locus_tag=CFSAN001082_15610
NZ_APAH01000300.1	Protein Homology	CDS	4889	5611	.	-	0	ID=cds-WP_000091471.1;Parent=gene-CFSAN001082_RS39270;Dbxref=GenBank:WP_000091471.1;Name=WP_000091471.1;Ontology_term=GO:0006355,GO:0007165,GO:0003677,GO:0003700,GO:0005515,GO:0140110;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,protein binding|0005515||IEA,transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462356.1;locus_tag=CFSAN001082_RS39270;product=helix-turn-helix transcriptional regulator;protein_id=WP_000091471.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	5888	6706	.	-	.	ID=gene-CFSAN001082_RS39275;Name=fkpA;gbkey=Gene;gene=fkpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39275;old_locus_tag=CFSAN001082_15615
NZ_APAH01000300.1	Protein Homology	CDS	5888	6706	.	-	0	ID=cds-WP_000838225.1;Parent=gene-CFSAN001082_RS39275;Dbxref=GenBank:WP_000838225.1;Name=WP_000838225.1;Ontology_term=GO:0006457,GO:0003755;gbkey=CDS;gene=fkpA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462357.1;locus_tag=CFSAN001082_RS39275;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000838225.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	6926	7144	.	+	.	ID=gene-CFSAN001082_RS39280;Name=CFSAN001082_RS39280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39280;old_locus_tag=CFSAN001082_15620
NZ_APAH01000300.1	Protein Homology	CDS	6926	7144	.	+	0	ID=cds-WP_001152701.1;Parent=gene-CFSAN001082_RS39280;Dbxref=GenBank:WP_001152701.1;Name=WP_001152701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462358.1;locus_tag=CFSAN001082_RS39280;product=protein SlyX;protein_id=WP_001152701.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	7333	7923	.	-	.	ID=gene-CFSAN001082_RS39285;Name=slyD;gbkey=Gene;gene=slyD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39285;old_locus_tag=CFSAN001082_15625
NZ_APAH01000300.1	Protein Homology	CDS	7333	7923	.	-	0	ID=cds-WP_000861341.1;Parent=gene-CFSAN001082_RS39285;Dbxref=GenBank:WP_000861341.1;Name=WP_000861341.1;Ontology_term=GO:0003755;gbkey=CDS;gene=slyD;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462359.1;locus_tag=CFSAN001082_RS39285;product=peptidylprolyl isomerase;protein_id=WP_000861341.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	8018	8218	.	-	.	ID=gene-CFSAN001082_RS39290;Name=CFSAN001082_RS39290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39290;old_locus_tag=CFSAN001082_15630
NZ_APAH01000300.1	Protein Homology	CDS	8018	8218	.	-	0	ID=cds-WP_001007735.1;Parent=gene-CFSAN001082_RS39290;Dbxref=GenBank:WP_001007735.1;Name=WP_001007735.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462360.1;locus_tag=CFSAN001082_RS39290;product=YheV family putative zinc ribbon protein;protein_id=WP_001007735.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	8228	10033	.	-	.	ID=gene-CFSAN001082_RS39295;Name=kefB;gbkey=Gene;gene=kefB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39295;old_locus_tag=CFSAN001082_15635
NZ_APAH01000300.1	Protein Homology	CDS	8228	10033	.	-	0	ID=cds-WP_023254557.1;Parent=gene-CFSAN001082_RS39295;Dbxref=GenBank:WP_023254557.1;Name=WP_023254557.1;Ontology_term=GO:0006813,GO:0015503;gbkey=CDS;gene=kefB;go_function=glutathione-regulated potassium exporter activity|0015503||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462361.1;locus_tag=CFSAN001082_RS39295;product=glutathione-regulated potassium-efflux system protein KefB;protein_id=WP_023254557.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	10033	10584	.	-	.	ID=gene-CFSAN001082_RS39300;Name=kefG;gbkey=Gene;gene=kefG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39300;old_locus_tag=CFSAN001082_15640
NZ_APAH01000300.1	Protein Homology	CDS	10033	10584	.	-	0	ID=cds-WP_000081820.1;Parent=gene-CFSAN001082_RS39300;Dbxref=GenBank:WP_000081820.1;Name=WP_000081820.1;Ontology_term=GO:0006813;gbkey=CDS;gene=kefG;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462362.1;locus_tag=CFSAN001082_RS39300;product=glutathione-regulated potassium-efflux system ancillary protein KefG;protein_id=WP_000081820.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	10850	12757	.	+	.	ID=gene-CFSAN001082_RS39305;Name=CFSAN001082_RS39305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39305;old_locus_tag=CFSAN001082_15645
NZ_APAH01000300.1	Protein Homology	CDS	10850	12757	.	+	0	ID=cds-WP_000634764.1;Parent=gene-CFSAN001082_RS39305;Dbxref=GenBank:WP_000634764.1;Name=WP_000634764.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462363.1;locus_tag=CFSAN001082_RS39305;product=ABC transporter ATP-binding protein;protein_id=WP_000634764.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	12920	13141	.	+	.	ID=gene-CFSAN001082_RS39310;Name=CFSAN001082_RS39310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39310;old_locus_tag=CFSAN001082_15650
NZ_APAH01000300.1	Protein Homology	CDS	12920	13141	.	+	0	ID=cds-WP_023224862.1;Parent=gene-CFSAN001082_RS39310;Dbxref=GenBank:WP_023224862.1;Name=WP_023224862.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001054026.1;locus_tag=CFSAN001082_RS39310;product=hypothetical protein;protein_id=WP_023224862.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	13143	13454	.	-	.	ID=gene-CFSAN001082_RS39315;Name=CFSAN001082_RS39315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39315;old_locus_tag=CFSAN001082_15655
NZ_APAH01000300.1	Protein Homology	CDS	13143	13454	.	-	0	ID=cds-WP_000047690.1;Parent=gene-CFSAN001082_RS39315;Dbxref=GenBank:WP_000047690.1;Name=WP_000047690.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462364.1;locus_tag=CFSAN001082_RS39315;product=monooxygenase;protein_id=WP_000047690.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	13652	14719	.	+	.	ID=gene-CFSAN001082_RS39320;Name=CFSAN001082_RS39320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39320;old_locus_tag=CFSAN001082_15660
NZ_APAH01000300.1	Protein Homology	CDS	13652	14719	.	+	0	ID=cds-WP_001214116.1;Parent=gene-CFSAN001082_RS39320;Dbxref=GenBank:WP_001214116.1;Name=WP_001214116.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462365.1;locus_tag=CFSAN001082_RS39320;product=hydrolase;protein_id=WP_001214116.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	14716	14934	.	+	.	ID=gene-CFSAN001082_RS39325;Name=CFSAN001082_RS39325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39325;old_locus_tag=CFSAN001082_15665
NZ_APAH01000300.1	Protein Homology	CDS	14716	14934	.	+	0	ID=cds-WP_000586568.1;Parent=gene-CFSAN001082_RS39325;Dbxref=GenBank:WP_000586568.1;Name=WP_000586568.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312232.1;locus_tag=CFSAN001082_RS39325;product=YheU family protein;protein_id=WP_000586568.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	14986	15855	.	+	.	ID=gene-CFSAN001082_RS39330;Name=CFSAN001082_RS39330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39330;old_locus_tag=CFSAN001082_15670
NZ_APAH01000300.1	Protein Homology	CDS	14986	15855	.	+	0	ID=cds-WP_001274690.1;Parent=gene-CFSAN001082_RS39330;Dbxref=GenBank:WP_001274690.1;Name=WP_001274690.1;Ontology_term=GO:0005975,GO:0005524,GO:0008974;gbkey=CDS;go_function=ATP binding|0005524||IEA,phosphoribulokinase activity|0008974||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462367.1;locus_tag=CFSAN001082_RS39330;product=phosphoribulokinase;protein_id=WP_001274690.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	15951	16355	.	-	.	ID=gene-CFSAN001082_RS39335;Name=CFSAN001082_RS39335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39335;old_locus_tag=CFSAN001082_15675
NZ_APAH01000300.1	Protein Homology	CDS	15951	16355	.	-	0	ID=cds-WP_001148919.1;Parent=gene-CFSAN001082_RS39335;Dbxref=GenBank:WP_001148919.1;Name=WP_001148919.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462368.1;locus_tag=CFSAN001082_RS39335;product=OsmC family protein;protein_id=WP_001148919.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	16663	17295	.	+	.	ID=gene-CFSAN001082_RS39340;Name=crp;gbkey=Gene;gene=crp;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39340;old_locus_tag=CFSAN001082_15680
NZ_APAH01000300.1	Protein Homology	CDS	16663	17295	.	+	0	ID=cds-WP_000242758.1;Parent=gene-CFSAN001082_RS39340;Dbxref=GenBank:WP_000242758.1;Name=WP_000242758.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=crp;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506431.1;locus_tag=CFSAN001082_RS39340;product=cAMP-activated global transcriptional regulator CRP;protein_id=WP_000242758.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	17344	19431	.	+	.	ID=gene-CFSAN001082_RS39345;Name=CFSAN001082_RS39345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39345;old_locus_tag=CFSAN001082_15685
NZ_APAH01000300.1	Protein Homology	CDS	17344	19431	.	+	0	ID=cds-WP_023254558.1;Parent=gene-CFSAN001082_RS39345;Dbxref=GenBank:WP_023254558.1;Name=WP_023254558.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462370.1;locus_tag=CFSAN001082_RS39345;product=YccS/YhfK family putative transporter;protein_id=WP_023254558.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	19474	20691	.	-	.	ID=gene-CFSAN001082_RS39350;Name=argD;gbkey=Gene;gene=argD;gene_biotype=protein_coding;gene_synonym=dapC;locus_tag=CFSAN001082_RS39350;old_locus_tag=CFSAN001082_15690
NZ_APAH01000300.1	Protein Homology	CDS	19474	20691	.	-	0	ID=cds-WP_023254559.1;Parent=gene-CFSAN001082_RS39350;Dbxref=GenBank:WP_023254559.1;Name=WP_023254559.1;gbkey=CDS;gene=argD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462371.1;locus_tag=CFSAN001082_RS39350;product=bifunctional acetylornithine/succinyldiaminopimelate transaminase;protein_id=WP_023254559.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	20777	21340	.	-	.	ID=gene-CFSAN001082_RS39355;Name=pabA;gbkey=Gene;gene=pabA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39355;old_locus_tag=CFSAN001082_15695
NZ_APAH01000300.1	Protein Homology	CDS	20777	21340	.	-	0	ID=cds-WP_000601878.1;Parent=gene-CFSAN001082_RS39355;Dbxref=GenBank:WP_000601878.1;Name=WP_000601878.1;gbkey=CDS;gene=pabA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462372.1;locus_tag=CFSAN001082_RS39355;product=aminodeoxychorismate synthase component 2;protein_id=WP_000601878.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	21372	21974	.	-	.	ID=gene-CFSAN001082_RS39360;Name=CFSAN001082_RS39360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39360;old_locus_tag=CFSAN001082_15700
NZ_APAH01000300.1	Protein Homology	CDS	21372	21974	.	-	0	ID=cds-WP_001280675.1;Parent=gene-CFSAN001082_RS39360;Dbxref=GenBank:WP_001280675.1;Name=WP_001280675.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462373.1;locus_tag=CFSAN001082_RS39360;product=putative adenosine monophosphate-protein transferase Fic;protein_id=WP_001280675.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	21964	22131	.	-	.	ID=gene-CFSAN001082_RS39365;Name=CFSAN001082_RS39365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39365;old_locus_tag=CFSAN001082_15705
NZ_APAH01000300.1	Protein Homology	CDS	21964	22131	.	-	0	ID=cds-WP_001519136.1;Parent=gene-CFSAN001082_RS39365;Dbxref=GenBank:WP_001519136.1;Name=WP_001519136.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462374.1;locus_tag=CFSAN001082_RS39365;product=YhfG family protein;protein_id=WP_001519136.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	22240	22812	.	-	.	ID=gene-CFSAN001082_RS39370;Name=ppiA;gbkey=Gene;gene=ppiA;gene_biotype=protein_coding;gene_synonym=rotA;locus_tag=CFSAN001082_RS39370;old_locus_tag=CFSAN001082_15710
NZ_APAH01000300.1	Protein Homology	CDS	22240	22812	.	-	0	ID=cds-WP_000920478.1;Parent=gene-CFSAN001082_RS39370;Dbxref=GenBank:WP_000920478.1;Name=WP_000920478.1;gbkey=CDS;gene=ppiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462375.1;locus_tag=CFSAN001082_RS39370;product=peptidylprolyl isomerase A;protein_id=WP_000920478.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	23090	24271	.	+	.	ID=gene-CFSAN001082_RS39375;Name=tsgA;gbkey=Gene;gene=tsgA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39375;old_locus_tag=CFSAN001082_15715
NZ_APAH01000300.1	Protein Homology	CDS	23090	24271	.	+	0	ID=cds-WP_023254560.1;Parent=gene-CFSAN001082_RS39375;Dbxref=GenBank:WP_023254560.1;Name=WP_023254560.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=tsgA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462376.1;locus_tag=CFSAN001082_RS39375;product=MFS transporter TsgA;protein_id=WP_023254560.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	24589	27132	.	+	.	ID=gene-CFSAN001082_RS39380;Name=nirB;gbkey=Gene;gene=nirB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39380;old_locus_tag=CFSAN001082_15720
NZ_APAH01000300.1	Protein Homology	CDS	24589	27132	.	+	0	ID=cds-WP_023197993.1;Parent=gene-CFSAN001082_RS39380;Dbxref=GenBank:WP_023197993.1;Name=WP_023197993.1;gbkey=CDS;gene=nirB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462377.1;locus_tag=CFSAN001082_RS39380;product=NADPH-nitrite reductase large subunit;protein_id=WP_023197993.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	27129	27455	.	+	.	ID=gene-CFSAN001082_RS39385;Name=nirD;gbkey=Gene;gene=nirD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39385;old_locus_tag=CFSAN001082_15725
NZ_APAH01000300.1	Protein Homology	CDS	27129	27455	.	+	0	ID=cds-WP_000084817.1;Parent=gene-CFSAN001082_RS39385;Dbxref=GenBank:WP_000084817.1;Name=WP_000084817.1;gbkey=CDS;gene=nirD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462378.1;locus_tag=CFSAN001082_RS39385;product=nitrite reductase small subunit NirD;protein_id=WP_000084817.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	27721	28530	.	+	.	ID=gene-CFSAN001082_RS39390;Name=nirC;gbkey=Gene;gene=nirC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39390;old_locus_tag=CFSAN001082_15730
NZ_APAH01000300.1	Protein Homology	CDS	27721	28530	.	+	0	ID=cds-WP_023254561.1;Parent=gene-CFSAN001082_RS39390;Dbxref=GenBank:WP_023254561.1;Name=WP_023254561.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=nirC;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462379.1;locus_tag=CFSAN001082_RS39390;product=nitrite transporter NirC;protein_id=WP_023254561.1;transl_table=11
NZ_APAH01000300.1	RefSeq	gene	28542	29915	.	+	.	ID=gene-CFSAN001082_RS39395;Name=cysG;gbkey=Gene;gene=cysG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39395;old_locus_tag=CFSAN001082_15735
NZ_APAH01000300.1	Protein Homology	CDS	28542	29915	.	+	0	ID=cds-WP_023254562.1;Parent=gene-CFSAN001082_RS39395;Dbxref=GenBank:WP_023254562.1;Name=WP_023254562.1;Ontology_term=GO:0019354,GO:0004851,GO:0043115,GO:0051266,GO:0051287;gbkey=CDS;gene=cysG;go_function=uroporphyrin-III C-methyltransferase activity|0004851||IEA,precorrin-2 dehydrogenase activity|0043115||IEA,sirohydrochlorin ferrochelatase activity|0051266||IEA,NAD binding|0051287||IEA;go_process=siroheme biosynthetic process|0019354||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462380.1;locus_tag=CFSAN001082_RS39395;product=siroheme synthase CysG;protein_id=WP_023254562.1;transl_table=11
##sequence-region NZ_APAH01000301.1 1 733
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000301.1	RefSeq	region	1	733	.	+	.	ID=NZ_APAH01000301.1:1..733;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000301.1	RefSeq	gene	1	354	.	-	.	ID=gene-CFSAN001082_RS47295;Name=CFSAN001082_RS47295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47295;old_locus_tag=CFSAN001082_15740;partial=true;start_range=.,1
NZ_APAH01000301.1	Protein Homology	CDS	1	354	.	-	0	ID=cds-WP_023254563.1;Parent=gene-CFSAN001082_RS47295;Dbxref=GenBank:WP_023254563.1;Name=WP_023254563.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025581.6;locus_tag=CFSAN001082_RS47295;partial=true;product=DUF4329 domain-containing protein;protein_id=WP_023254563.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000302.1 1 1515
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000302.1	RefSeq	region	1	1515	.	+	.	ID=NZ_APAH01000302.1:1..1515;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000302.1	RefSeq	gene	197	1324	.	-	.	ID=gene-CFSAN001082_RS39400;Name=CFSAN001082_RS39400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39400;old_locus_tag=CFSAN001082_15745
NZ_APAH01000302.1	Protein Homology	CDS	197	1324	.	-	0	ID=cds-WP_015675470.1;Parent=gene-CFSAN001082_RS39400;Dbxref=GenBank:WP_015675470.1;Name=WP_015675470.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014341265.1;locus_tag=CFSAN001082_RS39400;product=MFS transporter;protein_id=WP_015675470.1;transl_table=11
NZ_APAH01000302.1	RefSeq	gene	1233	1515	.	-	.	ID=gene-CFSAN001082_RS48950;Name=CFSAN001082_RS48950;end_range=1515,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48950;partial=true
NZ_APAH01000302.1	GeneMarkS-2+	CDS	1233	1515	.	-	1	ID=cds-WP_237747780.1;Parent=gene-CFSAN001082_RS48950;Dbxref=GenBank:WP_237747780.1;Name=WP_237747780.1;end_range=1515,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48950;partial=true;product=hypothetical protein;protein_id=WP_237747780.1;transl_table=11
##sequence-region NZ_APAH01000303.1 1 547
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000303.1	RefSeq	region	1	547	.	+	.	ID=NZ_APAH01000303.1:1..547;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000303.1	RefSeq	gene	1	484	.	+	.	ID=gene-CFSAN001082_RS39405;Name=CFSAN001082_RS39405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39405;old_locus_tag=CFSAN001082_15750;partial=true;start_range=.,1
NZ_APAH01000303.1	Protein Homology	CDS	1	484	.	+	1	ID=cds-WP_023254564.1;Parent=gene-CFSAN001082_RS39405;Dbxref=GenBank:WP_023254564.1;Name=WP_023254564.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463175.1;locus_tag=CFSAN001082_RS39405;partial=true;product=SdiA-regulated domain-containing protein;protein_id=WP_023254564.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000304.1 1 239
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000304.1	RefSeq	region	1	239	.	+	.	ID=NZ_APAH01000304.1:1..239;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000305.1 1 1807
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000305.1	RefSeq	region	1	1807	.	+	.	ID=NZ_APAH01000305.1:1..1807;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000305.1	RefSeq	gene	3	200	.	+	.	ID=gene-CFSAN001082_RS39410;Name=CFSAN001082_RS39410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39410;old_locus_tag=CFSAN001082_15755
NZ_APAH01000305.1	Protein Homology	CDS	3	200	.	+	0	ID=cds-WP_001117984.1;Parent=gene-CFSAN001082_RS39410;Dbxref=GenBank:WP_001117984.1;Name=WP_001117984.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004111984.1;locus_tag=CFSAN001082_RS39410;product=hypothetical protein;protein_id=WP_001117984.1;transl_table=11
NZ_APAH01000305.1	RefSeq	pseudogene	394	1278	.	+	.	ID=gene-CFSAN001082_RS47300;Name=CFSAN001082_RS47300;end_range=1278,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47300;partial=true;pseudo=true
NZ_APAH01000305.1	Protein Homology	CDS	394	1278	.	+	0	ID=cds-CFSAN001082_RS47300;Parent=gene-CFSAN001082_RS47300;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;end_range=1278,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343613.1;locus_tag=CFSAN001082_RS47300;partial=true;product=IS256 family transposase;pseudo=true;transl_table=11
NZ_APAH01000305.1	RefSeq	gene	1261	1455	.	+	.	ID=gene-CFSAN001082_RS48565;Name=CFSAN001082_RS48565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48565
NZ_APAH01000305.1	GeneMarkS-2+	CDS	1261	1455	.	+	0	ID=cds-WP_071990498.1;Parent=gene-CFSAN001082_RS48565;Dbxref=GenBank:WP_071990498.1;Name=WP_071990498.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48565;product=hypothetical protein;protein_id=WP_071990498.1;transl_table=11
NZ_APAH01000305.1	RefSeq	gene	1475	1807	.	+	.	ID=gene-CFSAN001082_RS39425;Name=CFSAN001082_RS39425;end_range=1807,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39425;old_locus_tag=CFSAN001082_15770;partial=true
NZ_APAH01000305.1	Protein Homology	CDS	1475	1807	.	+	0	ID=cds-WP_023254567.1;Parent=gene-CFSAN001082_RS39425;Dbxref=GenBank:WP_023254567.1;Name=WP_023254567.1;end_range=1807,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747668.1;locus_tag=CFSAN001082_RS39425;partial=true;product=hypothetical protein;protein_id=WP_023254567.1;transl_table=11
##sequence-region NZ_APAH01000306.1 1 720
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000306.1	RefSeq	region	1	720	.	+	.	ID=NZ_APAH01000306.1:1..720;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000306.1	RefSeq	pseudogene	1	97	.	-	.	ID=gene-CFSAN001082_RS49130;Name=CFSAN001082_RS49130;end_range=97,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49130;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000306.1	Protein Homology	CDS	1	97	.	-	0	ID=cds-CFSAN001082_RS49130;Parent=gene-CFSAN001082_RS49130;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=97,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF044473.3;locus_tag=CFSAN001082_RS49130;partial=true;product=HNH endonuclease;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000306.1	RefSeq	gene	119	385	.	-	.	ID=gene-CFSAN001082_RS39430;Name=CFSAN001082_RS39430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39430;old_locus_tag=CFSAN001082_15775
NZ_APAH01000306.1	Protein Homology	CDS	119	385	.	-	0	ID=cds-WP_001650677.1;Parent=gene-CFSAN001082_RS39430;Dbxref=GenBank:WP_001650677.1;Name=WP_001650677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000768134.1;locus_tag=CFSAN001082_RS39430;product=STY3281 family bacteriocin immunity protein;protein_id=WP_001650677.1;transl_table=11
NZ_APAH01000306.1	RefSeq	gene	382	699	.	-	.	ID=gene-CFSAN001082_RS39435;Name=CFSAN001082_RS39435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39435;old_locus_tag=CFSAN001082_15780
NZ_APAH01000306.1	Protein Homology	CDS	382	699	.	-	0	ID=cds-WP_031612953.1;Parent=gene-CFSAN001082_RS39435;Dbxref=GenBank:WP_031612953.1;Name=WP_031612953.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001141621.1;locus_tag=CFSAN001082_RS39435;product=PAAR domain-containing protein;protein_id=WP_031612953.1;transl_table=11
##sequence-region NZ_APAH01000307.1 1 2384
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000307.1	RefSeq	region	1	2384	.	+	.	ID=NZ_APAH01000307.1:1..2384;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000307.1	RefSeq	gene	107	1675	.	+	.	ID=gene-CFSAN001082_RS39440;Name=CFSAN001082_RS39440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39440;old_locus_tag=CFSAN001082_15785
NZ_APAH01000307.1	Protein Homology	CDS	107	1675	.	+	0	ID=cds-WP_000478462.1;Parent=gene-CFSAN001082_RS39440;Dbxref=GenBank:WP_000478462.1;Name=WP_000478462.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462130.1;locus_tag=CFSAN001082_RS39440;product=methyl-accepting chemotaxis protein;protein_id=WP_000478462.1;transl_table=11
NZ_APAH01000307.1	RefSeq	gene	1672	2319	.	-	.	ID=gene-CFSAN001082_RS39445;Name=CFSAN001082_RS39445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39445;old_locus_tag=CFSAN001082_15790
NZ_APAH01000307.1	Protein Homology	CDS	1672	2319	.	-	0	ID=cds-WP_000983434.1;Parent=gene-CFSAN001082_RS39445;Dbxref=GenBank:WP_000983434.1;Name=WP_000983434.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462129.1;locus_tag=CFSAN001082_RS39445;product=PadR family transcriptional regulator;protein_id=WP_000983434.1;transl_table=11
##sequence-region NZ_APAH01000308.1 1 2666
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000308.1	RefSeq	region	1	2666	.	+	.	ID=NZ_APAH01000308.1:1..2666;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000308.1	RefSeq	pseudogene	275	472	.	-	.	ID=gene-CFSAN001082_RS49265;Name=CFSAN001082_RS49265;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49265;pseudo=true
NZ_APAH01000308.1	Protein Homology	CDS	275	472	.	-	0	ID=cds-CFSAN001082_RS49265;Parent=gene-CFSAN001082_RS49265;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000742015.1;locus_tag=CFSAN001082_RS49265;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000308.1	RefSeq	gene	497	1114	.	-	.	ID=gene-CFSAN001082_RS39450;Name=CFSAN001082_RS39450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39450;old_locus_tag=CFSAN001082_15795
NZ_APAH01000308.1	Protein Homology	CDS	497	1114	.	-	0	ID=cds-WP_023254569.1;Parent=gene-CFSAN001082_RS39450;Dbxref=GenBank:WP_023254569.1;Name=WP_023254569.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001528503.1;locus_tag=CFSAN001082_RS39450;product=hypothetical protein;protein_id=WP_023254569.1;transl_table=11
NZ_APAH01000308.1	RefSeq	gene	1278	2639	.	+	.	ID=gene-CFSAN001082_RS39455;Name=yegQ;gbkey=Gene;gene=yegQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39455;old_locus_tag=CFSAN001082_15800
NZ_APAH01000308.1	Protein Homology	CDS	1278	2639	.	+	0	ID=cds-WP_023254570.1;Parent=gene-CFSAN001082_RS39455;Dbxref=GenBank:WP_023254570.1;Name=WP_023254570.1;gbkey=CDS;gene=yegQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461080.1;locus_tag=CFSAN001082_RS39455;product=tRNA 5-hydroxyuridine modification protein YegQ;protein_id=WP_023254570.1;transl_table=11
##sequence-region NZ_APAH01000309.1 1 20837
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000309.1	RefSeq	region	1	20837	.	+	.	ID=NZ_APAH01000309.1:1..20837;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000309.1	RefSeq	gene	185	412	.	+	.	ID=gene-CFSAN001082_RS39460;Name=feoA;gbkey=Gene;gene=feoA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39460;old_locus_tag=CFSAN001082_15805
NZ_APAH01000309.1	Protein Homology	CDS	185	412	.	+	0	ID=cds-WP_001160955.1;Parent=gene-CFSAN001082_RS39460;Dbxref=GenBank:WP_001160955.1;Name=WP_001160955.1;gbkey=CDS;gene=feoA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462408.1;locus_tag=CFSAN001082_RS39460;product=ferrous iron transporter A;protein_id=WP_001160955.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	431	2749	.	+	.	ID=gene-CFSAN001082_RS39465;Name=feoB;gbkey=Gene;gene=feoB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39465;old_locus_tag=CFSAN001082_15810
NZ_APAH01000309.1	Protein Homology	CDS	431	2749	.	+	0	ID=cds-WP_000736983.1;Parent=gene-CFSAN001082_RS39465;Dbxref=GenBank:WP_000736983.1;Name=WP_000736983.1;Ontology_term=GO:0006826,GO:0005525,GO:0015093,GO:0016020;gbkey=CDS;gene=feoB;go_component=membrane|0016020||IEA;go_function=GTP binding|0005525||IEA,ferrous iron transmembrane transporter activity|0015093||IEA;go_process=iron ion transport|0006826||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462409.1;locus_tag=CFSAN001082_RS39465;product=Fe(2+) transporter permease subunit FeoB;protein_id=WP_000736983.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	2762	2998	.	+	.	ID=gene-CFSAN001082_RS39470;Name=feoC;gbkey=Gene;gene=feoC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39470;old_locus_tag=CFSAN001082_15815
NZ_APAH01000309.1	Protein Homology	CDS	2762	2998	.	+	0	ID=cds-WP_000157588.1;Parent=gene-CFSAN001082_RS39470;Dbxref=GenBank:WP_000157588.1;Name=WP_000157588.1;gbkey=CDS;gene=feoC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462410.1;locus_tag=CFSAN001082_RS39470;product=[Fe-S]-dependent transcriptional repressor FeoC;protein_id=WP_000157588.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	3233	4147	.	+	.	ID=gene-CFSAN001082_RS39475;Name=CFSAN001082_RS39475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39475;old_locus_tag=CFSAN001082_15820
NZ_APAH01000309.1	Protein Homology	CDS	3233	4147	.	+	0	ID=cds-WP_000235942.1;Parent=gene-CFSAN001082_RS39475;Dbxref=GenBank:WP_000235942.1;Name=WP_000235942.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462411.1;locus_tag=CFSAN001082_RS39475;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_000235942.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	4183	4953	.	-	.	ID=gene-CFSAN001082_RS39480;Name=bioH;gbkey=Gene;gene=bioH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39480;old_locus_tag=CFSAN001082_15825
NZ_APAH01000309.1	Protein Homology	CDS	4183	4953	.	-	0	ID=cds-WP_023254571.1;Parent=gene-CFSAN001082_RS39480;Dbxref=GenBank:WP_023254571.1;Name=WP_023254571.1;Ontology_term=GO:0052689;gbkey=CDS;gene=bioH;go_function=carboxylic ester hydrolase activity|0052689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462412.1;locus_tag=CFSAN001082_RS39480;product=pimeloyl-ACP methyl ester esterase BioH;protein_id=WP_023254571.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	4991	5674	.	+	.	ID=gene-CFSAN001082_RS39485;Name=gntX;gbkey=Gene;gene=gntX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39485;old_locus_tag=CFSAN001082_15830
NZ_APAH01000309.1	Protein Homology	CDS	4991	5674	.	+	0	ID=cds-WP_000958733.1;Parent=gene-CFSAN001082_RS39485;Dbxref=GenBank:WP_000958733.1;Name=WP_000958733.1;Ontology_term=GO:0009116;gbkey=CDS;gene=gntX;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462413.1;locus_tag=CFSAN001082_RS39485;product=DNA utilization protein GntX;protein_id=WP_000958733.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	5733	6308	.	+	.	ID=gene-CFSAN001082_RS39490;Name=nfuA;gbkey=Gene;gene=nfuA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39490;old_locus_tag=CFSAN001082_15835
NZ_APAH01000309.1	Protein Homology	CDS	5733	6308	.	+	0	ID=cds-WP_000619387.1;Parent=gene-CFSAN001082_RS39490;Dbxref=GenBank:WP_000619387.1;Name=WP_000619387.1;Ontology_term=GO:0016226,GO:0051604,GO:0051539;gbkey=CDS;gene=nfuA;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA,protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016942932.1;locus_tag=CFSAN001082_RS39490;product=Fe-S biogenesis protein NfuA;protein_id=WP_000619387.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	6685	8001	.	+	.	ID=gene-CFSAN001082_RS39495;Name=gntT;gbkey=Gene;gene=gntT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39495;old_locus_tag=CFSAN001082_15840
NZ_APAH01000309.1	Protein Homology	CDS	6685	8001	.	+	0	ID=cds-WP_001131741.1;Parent=gene-CFSAN001082_RS39495;Dbxref=GenBank:WP_001131741.1;Name=WP_001131741.1;gbkey=CDS;gene=gntT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462415.1;locus_tag=CFSAN001082_RS39495;product=gluconate transporter;protein_id=WP_001131741.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	8120	10198	.	-	.	ID=gene-CFSAN001082_RS39500;Name=malQ;gbkey=Gene;gene=malQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39500;old_locus_tag=CFSAN001082_15845
NZ_APAH01000309.1	Protein Homology	CDS	8120	10198	.	-	0	ID=cds-WP_023254572.1;Parent=gene-CFSAN001082_RS39500;Dbxref=GenBank:WP_023254572.1;Name=WP_023254572.1;Ontology_term=GO:0005975,GO:0004134;gbkey=CDS;gene=malQ;go_function=4-alpha-glucanotransferase activity|0004134||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462416.1;locus_tag=CFSAN001082_RS39500;product=4-alpha-glucanotransferase;protein_id=WP_023254572.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	10208	12601	.	-	.	ID=gene-CFSAN001082_RS39505;Name=malP;gbkey=Gene;gene=malP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39505;old_locus_tag=CFSAN001082_15850
NZ_APAH01000309.1	Protein Homology	CDS	10208	12601	.	-	0	ID=cds-WP_023254573.1;Parent=gene-CFSAN001082_RS39505;Dbxref=GenBank:WP_023254573.1;Name=WP_023254573.1;Ontology_term=GO:0005975,GO:0008184,GO:0030170;gbkey=CDS;gene=malP;go_function=glycogen phosphorylase activity|0008184||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462417.1;locus_tag=CFSAN001082_RS39505;product=maltodextrin phosphorylase;protein_id=WP_023254573.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	13196	15901	.	+	.	ID=gene-CFSAN001082_RS39510;Name=malT;gbkey=Gene;gene=malT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39510;old_locus_tag=CFSAN001082_15855
NZ_APAH01000309.1	Protein Homology	CDS	13196	15901	.	+	0	ID=cds-WP_000907030.1;Parent=gene-CFSAN001082_RS39510;Dbxref=GenBank:WP_000907030.1;Name=WP_000907030.1;Ontology_term=GO:0006355,GO:0003677,GO:0005515;gbkey=CDS;gene=malT;go_function=DNA binding|0003677||IEA,protein binding|0005515||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000907024.1;locus_tag=CFSAN001082_RS39510;product=HTH-type transcriptional regulator MalT;protein_id=WP_000907030.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	16043	16603	.	-	.	ID=gene-CFSAN001082_RS39515;Name=CFSAN001082_RS39515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39515;old_locus_tag=CFSAN001082_15860
NZ_APAH01000309.1	Protein Homology	CDS	16043	16603	.	-	0	ID=cds-WP_023254574.1;Parent=gene-CFSAN001082_RS39515;Dbxref=GenBank:WP_023254574.1;Name=WP_023254574.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001650910.1;locus_tag=CFSAN001082_RS39515;product=hypothetical protein;protein_id=WP_023254574.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	16600	17634	.	-	.	ID=gene-CFSAN001082_RS39520;Name=rtcA;gbkey=Gene;gene=rtcA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39520;old_locus_tag=CFSAN001082_15865
NZ_APAH01000309.1	Protein Homology	CDS	16600	17634	.	-	0	ID=cds-WP_023254575.1;Parent=gene-CFSAN001082_RS39520;Dbxref=GenBank:WP_023254575.1;Name=WP_023254575.1;Ontology_term=GO:0006396,GO:0003963;gbkey=CDS;gene=rtcA;go_function=RNA-3'-phosphate cyclase activity|0003963||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000101029.1;locus_tag=CFSAN001082_RS39520;product=RNA 3'-terminal phosphate cyclase;protein_id=WP_023254575.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	17638	18852	.	-	.	ID=gene-CFSAN001082_RS39525;Name=rtcB;gbkey=Gene;gene=rtcB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39525;old_locus_tag=CFSAN001082_15870
NZ_APAH01000309.1	Protein Homology	CDS	17638	18852	.	-	0	ID=cds-WP_001105531.1;Parent=gene-CFSAN001082_RS39525;Dbxref=GenBank:WP_001105531.1;Name=WP_001105531.1;gbkey=CDS;gene=rtcB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417879.1;locus_tag=CFSAN001082_RS39525;product=RNA-splicing ligase RtcB;protein_id=WP_001105531.1;transl_table=11
NZ_APAH01000309.1	RefSeq	gene	19204	20757	.	-	.	ID=gene-CFSAN001082_RS39530;Name=CFSAN001082_RS39530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39530;old_locus_tag=CFSAN001082_15875
NZ_APAH01000309.1	Protein Homology	CDS	19204	20757	.	-	0	ID=cds-WP_023254576.1;Parent=gene-CFSAN001082_RS39530;Dbxref=GenBank:WP_023254576.1;Name=WP_023254576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462423.1;locus_tag=CFSAN001082_RS39530;product=vWA domain-containing protein;protein_id=WP_023254576.1;transl_table=11
##sequence-region NZ_APAH01000310.1 1 6801
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000310.1	RefSeq	region	1	6801	.	+	.	ID=NZ_APAH01000310.1:1..6801;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000310.1	RefSeq	gene	65	706	.	+	.	ID=gene-CFSAN001082_RS39535;Name=CFSAN001082_RS39535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39535;old_locus_tag=CFSAN001082_15880
NZ_APAH01000310.1	Protein Homology	CDS	65	706	.	+	0	ID=cds-WP_001576139.1;Parent=gene-CFSAN001082_RS39535;Dbxref=GenBank:WP_001576139.1;Name=WP_001576139.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460239.1;locus_tag=CFSAN001082_RS39535;product=hypothetical protein;protein_id=WP_001576139.1;transl_table=11
NZ_APAH01000310.1	RefSeq	gene	1020	1268	.	+	.	ID=gene-CFSAN001082_RS39540;Name=CFSAN001082_RS39540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39540;old_locus_tag=CFSAN001082_15885
NZ_APAH01000310.1	Protein Homology	CDS	1020	1268	.	+	0	ID=cds-WP_000512149.1;Parent=gene-CFSAN001082_RS39540;Dbxref=GenBank:WP_000512149.1;Name=WP_000512149.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460240.1;locus_tag=CFSAN001082_RS39540;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_000512149.1;transl_table=11
NZ_APAH01000310.1	RefSeq	gene	1407	1505	.	-	.	ID=gene-CFSAN001082_RS48330;Name=CFSAN001082_RS48330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48330
NZ_APAH01000310.1	Protein Homology	CDS	1407	1505	.	-	0	ID=cds-WP_001589065.1;Parent=gene-CFSAN001082_RS48330;Dbxref=GenBank:WP_001589065.1;Name=WP_001589065.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791242.1;locus_tag=CFSAN001082_RS48330;product=YoaK family small membrane protein;protein_id=WP_001589065.1;transl_table=11
NZ_APAH01000310.1	RefSeq	gene	1701	1952	.	+	.	ID=gene-CFSAN001082_RS39545;Name=CFSAN001082_RS39545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39545;old_locus_tag=CFSAN001082_15890
NZ_APAH01000310.1	Protein Homology	CDS	1701	1952	.	+	0	ID=cds-WP_000673492.1;Parent=gene-CFSAN001082_RS39545;Dbxref=GenBank:WP_000673492.1;Name=WP_000673492.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460241.1;locus_tag=CFSAN001082_RS39545;product=putative hemolysin;protein_id=WP_000673492.1;transl_table=11
NZ_APAH01000310.1	RefSeq	gene	2021	2332	.	+	.	ID=gene-CFSAN001082_RS39550;Name=CFSAN001082_RS39550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39550;old_locus_tag=CFSAN001082_15895
NZ_APAH01000310.1	Protein Homology	CDS	2021	2332	.	+	0	ID=cds-WP_000487126.1;Parent=gene-CFSAN001082_RS39550;Dbxref=GenBank:WP_000487126.1;Name=WP_000487126.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460242.1;locus_tag=CFSAN001082_RS39550;product=hypothetical protein;protein_id=WP_000487126.1;transl_table=11
NZ_APAH01000310.1	RefSeq	gene	2318	2665	.	-	.	ID=gene-CFSAN001082_RS39555;Name=CFSAN001082_RS39555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39555;old_locus_tag=CFSAN001082_15900
NZ_APAH01000310.1	Protein Homology	CDS	2318	2665	.	-	0	ID=cds-WP_023254577.1;Parent=gene-CFSAN001082_RS39555;Dbxref=GenBank:WP_023254577.1;Name=WP_023254577.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460243.1;locus_tag=CFSAN001082_RS39555;product=DUF488 domain-containing protein;protein_id=WP_023254577.1;transl_table=11
NZ_APAH01000310.1	RefSeq	gene	2786	3970	.	-	.	ID=gene-CFSAN001082_RS39560;Name=CFSAN001082_RS39560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39560;old_locus_tag=CFSAN001082_15905
NZ_APAH01000310.1	Protein Homology	CDS	2786	3970	.	-	0	ID=cds-WP_000205341.1;Parent=gene-CFSAN001082_RS39560;Dbxref=GenBank:WP_000205341.1;Name=WP_000205341.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460244.1;locus_tag=CFSAN001082_RS39560;product=CynX/NimT family MFS transporter;protein_id=WP_000205341.1;transl_table=11
NZ_APAH01000310.1	RefSeq	gene	4071	4865	.	+	.	ID=gene-CFSAN001082_RS39565;Name=CFSAN001082_RS39565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39565;old_locus_tag=CFSAN001082_15910
NZ_APAH01000310.1	Protein Homology	CDS	4071	4865	.	+	0	ID=cds-WP_000579793.1;Parent=gene-CFSAN001082_RS39565;Dbxref=GenBank:WP_000579793.1;Name=WP_000579793.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460245.1;locus_tag=CFSAN001082_RS39565;product=AraC family transcriptional regulator;protein_id=WP_000579793.1;transl_table=11
NZ_APAH01000310.1	RefSeq	gene	4845	5291	.	-	.	ID=gene-CFSAN001082_RS39570;Name=CFSAN001082_RS39570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39570;old_locus_tag=CFSAN001082_15915
NZ_APAH01000310.1	Protein Homology	CDS	4845	5291	.	-	0	ID=cds-WP_000460698.1;Parent=gene-CFSAN001082_RS39570;Dbxref=GenBank:WP_000460698.1;Name=WP_000460698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460246.2;locus_tag=CFSAN001082_RS39570;product=DUF441 domain-containing protein;protein_id=WP_000460698.1;transl_table=11
NZ_APAH01000310.1	RefSeq	gene	5497	5604	.	+	.	ID=gene-CFSAN001082_RS39575;Name=yoaI;gbkey=Gene;gene=yoaI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39575;old_locus_tag=CFSAN001082_15920
NZ_APAH01000310.1	Protein Homology	CDS	5497	5604	.	+	0	ID=cds-WP_000272237.1;Parent=gene-CFSAN001082_RS39575;Dbxref=GenBank:WP_000272237.1;Name=WP_000272237.1;gbkey=CDS;gene=yoaI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460247.1;locus_tag=CFSAN001082_RS39575;product=small membrane protein YoaI;protein_id=WP_000272237.1;transl_table=11
NZ_APAH01000310.1	RefSeq	gene	5601	6119	.	-	.	ID=gene-CFSAN001082_RS39580;Name=CFSAN001082_RS39580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39580;old_locus_tag=CFSAN001082_15925
NZ_APAH01000310.1	Protein Homology	CDS	5601	6119	.	-	0	ID=cds-WP_010989016.1;Parent=gene-CFSAN001082_RS39580;Dbxref=GenBank:WP_010989016.1;Name=WP_010989016.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460248.1;locus_tag=CFSAN001082_RS39580;product=YbaK/prolyl-tRNA synthetase associated domain-containing protein;protein_id=WP_010989016.1;transl_table=11
NZ_APAH01000310.1	RefSeq	gene	6169	6801	.	-	.	ID=gene-CFSAN001082_RS39585;Name=CFSAN001082_RS39585;end_range=6801,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39585;old_locus_tag=CFSAN001082_15930;partial=true
NZ_APAH01000310.1	Protein Homology	CDS	6169	6801	.	-	0	ID=cds-WP_023254578.1;Parent=gene-CFSAN001082_RS39585;Dbxref=GenBank:WP_023254578.1;Name=WP_023254578.1;end_range=6801,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460249.1;locus_tag=CFSAN001082_RS39585;partial=true;product=diguanylate cyclase;protein_id=WP_023254578.1;transl_table=11
##sequence-region NZ_APAH01000311.1 1 229
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000311.1	RefSeq	region	1	229	.	+	.	ID=NZ_APAH01000311.1:1..229;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000312.1 1 2019
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000312.1	RefSeq	region	1	2019	.	+	.	ID=NZ_APAH01000312.1:1..2019;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000312.1	RefSeq	gene	1	2019	.	+	.	ID=gene-CFSAN001082_RS39590;Name=CFSAN001082_RS39590;end_range=2019,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39590;old_locus_tag=CFSAN001082_15935;partial=true;start_range=.,1
NZ_APAH01000312.1	Protein Homology	CDS	1	2019	.	+	2	ID=cds-WP_023254579.1;Parent=gene-CFSAN001082_RS39590;Dbxref=GenBank:WP_023254579.1;Name=WP_023254579.1;end_range=2019,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001044775.1;locus_tag=CFSAN001082_RS39590;partial=true;product=autotransporter-associated beta strand repeat-containing protein;protein_id=WP_023254579.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000313.1 1 3806
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000313.1	RefSeq	region	1	3806	.	+	.	ID=NZ_APAH01000313.1:1..3806;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000313.1	RefSeq	gene	60	746	.	-	.	ID=gene-CFSAN001082_RS39595;Name=CFSAN001082_RS39595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39595;old_locus_tag=CFSAN001082_15940
NZ_APAH01000313.1	Protein Homology	CDS	60	746	.	-	0	ID=cds-WP_023254580.1;Parent=gene-CFSAN001082_RS39595;Dbxref=GenBank:WP_023254580.1;Name=WP_023254580.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463456.1;locus_tag=CFSAN001082_RS39595;product=tRNA/rRNA methyltransferase;protein_id=WP_023254580.1;transl_table=11
NZ_APAH01000313.1	RefSeq	gene	1146	1286	.	-	.	ID=gene-CFSAN001082_RS0123725;Name=yjjY;gbkey=Gene;gene=yjjY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123725
NZ_APAH01000313.1	Protein Homology	CDS	1146	1286	.	-	0	ID=cds-WP_001541509.1;Parent=gene-CFSAN001082_RS0123725;Dbxref=GenBank:WP_001541509.1;Name=WP_001541509.1;gbkey=CDS;gene=yjjY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463455.1;locus_tag=CFSAN001082_RS0123725;product=protein YjjY;protein_id=WP_001541509.1;transl_table=11
NZ_APAH01000313.1	RefSeq	gene	1382	2098	.	+	.	ID=gene-CFSAN001082_RS39600;Name=arcA;gbkey=Gene;gene=arcA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39600;old_locus_tag=CFSAN001082_15945
NZ_APAH01000313.1	Protein Homology	CDS	1382	2098	.	+	0	ID=cds-WP_001194359.1;Parent=gene-CFSAN001082_RS39600;Dbxref=GenBank:WP_001194359.1;Name=WP_001194359.1;gbkey=CDS;gene=arcA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003621071.1;locus_tag=CFSAN001082_RS39600;product=two-component system response regulator ArcA;protein_id=WP_001194359.1;transl_table=11
NZ_APAH01000313.1	RefSeq	gene	2366	2680	.	+	.	ID=gene-CFSAN001082_RS39605;Name=CFSAN001082_RS39605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39605;old_locus_tag=CFSAN001082_15950
NZ_APAH01000313.1	Protein Homology	CDS	2366	2680	.	+	0	ID=cds-WP_023254581.1;Parent=gene-CFSAN001082_RS39605;Dbxref=GenBank:WP_023254581.1;Name=WP_023254581.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463453.1;locus_tag=CFSAN001082_RS39605;product=hypothetical protein;protein_id=WP_023254581.1;transl_table=11
NZ_APAH01000313.1	RefSeq	gene	3065	3736	.	+	.	ID=gene-CFSAN001082_RS39610;Name=CFSAN001082_RS39610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39610;old_locus_tag=CFSAN001082_15955
NZ_APAH01000313.1	Protein Homology	CDS	3065	3736	.	+	0	ID=cds-WP_000811635.1;Parent=gene-CFSAN001082_RS39610;Dbxref=GenBank:WP_000811635.1;Name=WP_000811635.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463452.1;locus_tag=CFSAN001082_RS39610;product=winged helix-turn-helix transcriptional regulator;protein_id=WP_000811635.1;transl_table=11
##sequence-region NZ_APAH01000314.1 1 9071
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000314.1	RefSeq	region	1	9071	.	+	.	ID=NZ_APAH01000314.1:1..9071;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000314.1	RefSeq	gene	5	2449	.	+	.	ID=gene-CFSAN001082_RS39615;Name=dmsA;gbkey=Gene;gene=dmsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39615;old_locus_tag=CFSAN001082_15960
NZ_APAH01000314.1	Protein Homology	CDS	5	2449	.	+	0	ID=cds-WP_024150310.1;Parent=gene-CFSAN001082_RS39615;Dbxref=GenBank:WP_024150310.1;Name=WP_024150310.1;Ontology_term=GO:0009389,GO:0030151;gbkey=CDS;gene=dmsA;go_function=dimethyl sulfoxide reductase activity|0009389||IEA,molybdenum ion binding|0030151||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459940.1;locus_tag=CFSAN001082_RS39615;product=dimethylsulfoxide reductase subunit A;protein_id=WP_024150310.1;transl_table=11
NZ_APAH01000314.1	RefSeq	gene	2460	3077	.	+	.	ID=gene-CFSAN001082_RS39620;Name=dmsB;gbkey=Gene;gene=dmsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39620;old_locus_tag=CFSAN001082_15965
NZ_APAH01000314.1	Protein Homology	CDS	2460	3077	.	+	0	ID=cds-WP_000213069.1-2;Parent=gene-CFSAN001082_RS39620;Dbxref=GenBank:WP_000213069.1;Name=WP_000213069.1;gbkey=CDS;gene=dmsB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000213046.1;locus_tag=CFSAN001082_RS39620;product=dimethylsulfoxide reductase iron-sulfur subunit DmsB;protein_id=WP_000213069.1;transl_table=11
NZ_APAH01000314.1	RefSeq	gene	3079	3942	.	+	.	ID=gene-CFSAN001082_RS39625;Name=CFSAN001082_RS39625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39625;old_locus_tag=CFSAN001082_15970
NZ_APAH01000314.1	Protein Homology	CDS	3079	3942	.	+	0	ID=cds-WP_023254583.1;Parent=gene-CFSAN001082_RS39625;Dbxref=GenBank:WP_023254583.1;Name=WP_023254583.1;Ontology_term=GO:0009061,GO:0019645,GO:0009389,GO:0005886,GO:0009390;gbkey=CDS;go_component=plasma membrane|0005886||IEA,dimethyl sulfoxide reductase complex|0009390||IEA;go_function=dimethyl sulfoxide reductase activity|0009389||IEA;go_process=anaerobic respiration|0009061||IEA,anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459942.1;locus_tag=CFSAN001082_RS39625;product=dimethyl sulfoxide reductase anchor subunit family protein;protein_id=WP_023254583.1;transl_table=11
NZ_APAH01000314.1	RefSeq	gene	4292	5440	.	+	.	ID=gene-CFSAN001082_RS39630;Name=CFSAN001082_RS39630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39630;old_locus_tag=CFSAN001082_15975
NZ_APAH01000314.1	Protein Homology	CDS	4292	5440	.	+	0	ID=cds-WP_000109271.1;Parent=gene-CFSAN001082_RS39630;Dbxref=GenBank:WP_000109271.1;Name=WP_000109271.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459943.1;locus_tag=CFSAN001082_RS39630;product=MFS transporter;protein_id=WP_000109271.1;transl_table=11
NZ_APAH01000314.1	RefSeq	gene	5658	7079	.	+	.	ID=gene-CFSAN001082_RS39635;Name=CFSAN001082_RS39635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39635;old_locus_tag=CFSAN001082_15980
NZ_APAH01000314.1	Protein Homology	CDS	5658	7079	.	+	0	ID=cds-WP_001134264.1;Parent=gene-CFSAN001082_RS39635;Dbxref=GenBank:WP_001134264.1;Name=WP_001134264.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459944.1;locus_tag=CFSAN001082_RS39635;product=APC family permease;protein_id=WP_001134264.1;transl_table=11
NZ_APAH01000314.1	RefSeq	gene	7371	8168	.	-	.	ID=gene-CFSAN001082_RS39640;Name=pflA;gbkey=Gene;gene=pflA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39640;old_locus_tag=CFSAN001082_15985
NZ_APAH01000314.1	Protein Homology	CDS	7371	8168	.	-	0	ID=cds-WP_000067928.1;Parent=gene-CFSAN001082_RS39640;Dbxref=GenBank:WP_000067928.1;Name=WP_000067928.1;Ontology_term=GO:0043365,GO:0051539;gbkey=CDS;gene=pflA;go_function=[formate-C-acetyltransferase]-activating enzyme activity|0043365||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015696619.1;locus_tag=CFSAN001082_RS39640;product=pyruvate formate lyase 1-activating protein;protein_id=WP_000067928.1;transl_table=11
NZ_APAH01000314.1	RefSeq	pseudogene	8287	8623	.	-	.	ID=gene-CFSAN001082_RS48955;Name=CFSAN001082_RS48955;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48955;pseudo=true
NZ_APAH01000314.1	Protein Homology	CDS	8287	8623	.	-	0	ID=cds-CFSAN001082_RS48955;Parent=gene-CFSAN001082_RS48955;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459946.1;locus_tag=CFSAN001082_RS48955;product=cytoplasmic protein;pseudo=true;transl_table=11
NZ_APAH01000314.1	RefSeq	pseudogene	8754	9071	.	+	.	ID=gene-CFSAN001082_RS0123745;Name=CFSAN001082_RS0123745;end_range=9071,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0123745;old_locus_tag=CFSAN001082_15990;partial=true;pseudo=true
NZ_APAH01000314.1	Protein Homology	CDS	8754	9071	.	+	0	ID=cds-CFSAN001082_RS0123745;Parent=gene-CFSAN001082_RS0123745;Note=involved in bacterial survival in the host cell%3B involved in macrophage replication and filament formation%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=9071,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459947.1;locus_tag=CFSAN001082_RS0123745;partial=true;product=pathogenicity island 1 protein SopD2;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000315.1 1 677
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000315.1	RefSeq	region	1	677	.	+	.	ID=NZ_APAH01000315.1:1..677;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000315.1	RefSeq	gene	1	646	.	+	.	ID=gene-CFSAN001082_RS39645;Name=CFSAN001082_RS39645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39645;old_locus_tag=CFSAN001082_15995;partial=true;start_range=.,1
NZ_APAH01000315.1	Protein Homology	CDS	1	646	.	+	1	ID=cds-WP_023254585.1;Parent=gene-CFSAN001082_RS39645;Dbxref=GenBank:WP_023254585.1;Name=WP_023254585.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001533050.1;locus_tag=CFSAN001082_RS39645;partial=true;product=hypothetical protein;protein_id=WP_023254585.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000316.1 1 4279
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000316.1	RefSeq	region	1	4279	.	+	.	ID=NZ_APAH01000316.1:1..4279;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000316.1	RefSeq	gene	289	432	.	+	.	ID=gene-CFSAN001082_RS39650;Name=CFSAN001082_RS39650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39650;old_locus_tag=CFSAN001082_16000
NZ_APAH01000316.1	Protein Homology	CDS	289	432	.	+	0	ID=cds-WP_001537930.1;Parent=gene-CFSAN001082_RS39650;Dbxref=GenBank:WP_001537930.1;Name=WP_001537930.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460794.1;locus_tag=CFSAN001082_RS39650;product=DUF2627 domain-containing protein;protein_id=WP_001537930.1;transl_table=11
NZ_APAH01000316.1	RefSeq	gene	445	654	.	+	.	ID=gene-CFSAN001082_RS39655;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;gene_synonym=gicA,msmC;locus_tag=CFSAN001082_RS39655;old_locus_tag=CFSAN001082_16005
NZ_APAH01000316.1	Protein Homology	CDS	445	654	.	+	0	ID=cds-WP_001062678.1;Parent=gene-CFSAN001082_RS39655;Dbxref=GenBank:WP_001062678.1;Name=WP_001062678.1;Ontology_term=GO:0031564,GO:0001072,GO:0003697,GO:0003723;gbkey=CDS;gene=cspE;go_function=transcription antitermination factor activity%2C RNA binding|0001072||IEA,single-stranded DNA binding|0003697||IEA,RNA binding|0003723||IEA;go_process=transcription antitermination|0031564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310560.1;locus_tag=CFSAN001082_RS39655;product=transcription antiterminator/RNA stability regulator CspE;protein_id=WP_001062678.1;transl_table=11
NZ_APAH01000316.1	RefSeq	gene	874	2619	.	+	.	ID=gene-CFSAN001082_RS39660;Name=ftsI;gbkey=Gene;gene=ftsI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39660;old_locus_tag=CFSAN001082_16010
NZ_APAH01000316.1	Protein Homology	CDS	874	2619	.	+	0	ID=cds-WP_000730322.1;Parent=gene-CFSAN001082_RS39660;Dbxref=GenBank:WP_000730322.1;Name=WP_000730322.1;Ontology_term=GO:0009252,GO:0051301,GO:0008658,GO:0008955,GO:0005886;gbkey=CDS;gene=ftsI;go_component=plasma membrane|0005886||IEA;go_function=penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460792.1;locus_tag=CFSAN001082_RS39660;product=peptidoglycan glycosyltransferase FtsI;protein_id=WP_000730322.1;transl_table=11
NZ_APAH01000316.1	RefSeq	gene	2685	3494	.	+	.	ID=gene-CFSAN001082_RS39665;Name=rlmA;gbkey=Gene;gene=rlmA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39665;old_locus_tag=CFSAN001082_16015
NZ_APAH01000316.1	Protein Homology	CDS	2685	3494	.	+	0	ID=cds-WP_023254586.1;Parent=gene-CFSAN001082_RS39665;Dbxref=GenBank:WP_023254586.1;Name=WP_023254586.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rlmA;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460791.1;locus_tag=CFSAN001082_RS39665;product=23S rRNA (guanine(745)-N(1))-methyltransferase;protein_id=WP_023254586.1;transl_table=11
NZ_APAH01000316.1	RefSeq	gene	3491	4057	.	-	.	ID=gene-CFSAN001082_RS39670;Name=mntP;gbkey=Gene;gene=mntP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39670;old_locus_tag=CFSAN001082_16020
NZ_APAH01000316.1	Protein Homology	CDS	3491	4057	.	-	0	ID=cds-WP_001518359.1;Parent=gene-CFSAN001082_RS39670;Dbxref=GenBank:WP_001518359.1;Name=WP_001518359.1;gbkey=CDS;gene=mntP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416335.4;locus_tag=CFSAN001082_RS39670;product=manganese efflux pump MntP;protein_id=WP_001518359.1;transl_table=11
NZ_APAH01000316.1	cmsearch	riboswitch	4169	4260	.	-	.	ID=id-NZ_APAH01000316.1:4169..4260;Dbxref=RFAM:RF00080;Note=yybP-ykoY riboswitch is a manganese riboswitch that directly binds Mn;bound_moiety=manganese;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
##sequence-region NZ_APAH01000317.1 1 19195
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000317.1	RefSeq	region	1	19195	.	+	.	ID=NZ_APAH01000317.1:1..19195;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000317.1	RefSeq	gene	121	588	.	+	.	ID=gene-CFSAN001082_RS39675;Name=slyB;gbkey=Gene;gene=slyB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39675;old_locus_tag=CFSAN001082_16025
NZ_APAH01000317.1	Protein Homology	CDS	121	588	.	+	0	ID=cds-WP_000597179.1;Parent=gene-CFSAN001082_RS39675;Dbxref=GenBank:WP_000597179.1;Name=WP_000597179.1;gbkey=CDS;gene=slyB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460408.1;locus_tag=CFSAN001082_RS39675;product=outer membrane lipoprotein SlyB;protein_id=WP_000597179.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	636	1076	.	-	.	ID=gene-CFSAN001082_RS39680;Name=slyA;gbkey=Gene;gene=slyA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39680;old_locus_tag=CFSAN001082_16030
NZ_APAH01000317.1	Protein Homology	CDS	636	1076	.	-	0	ID=cds-WP_000764552.1;Parent=gene-CFSAN001082_RS39680;Dbxref=GenBank:WP_000764552.1;Name=WP_000764552.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=slyA;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460407.3;locus_tag=CFSAN001082_RS39680;product=transcriptional regulator SlyA;protein_id=WP_000764552.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	1271	1507	.	+	.	ID=gene-CFSAN001082_RS39685;Name=CFSAN001082_RS39685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39685;old_locus_tag=CFSAN001082_16035
NZ_APAH01000317.1	Protein Homology	CDS	1271	1507	.	+	0	ID=cds-WP_000649755.1;Parent=gene-CFSAN001082_RS39685;Dbxref=GenBank:WP_000649755.1;Name=WP_000649755.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460406.1;locus_tag=CFSAN001082_RS39685;product=DUF1656 domain-containing protein;protein_id=WP_000649755.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	1510	2370	.	+	.	ID=gene-CFSAN001082_RS39690;Name=CFSAN001082_RS39690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39690;old_locus_tag=CFSAN001082_16040
NZ_APAH01000317.1	Protein Homology	CDS	1510	2370	.	+	0	ID=cds-WP_001538147.1;Parent=gene-CFSAN001082_RS39690;Dbxref=GenBank:WP_001538147.1;Name=WP_001538147.1;Ontology_term=GO:0006810,GO:0005215,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012218841.1;locus_tag=CFSAN001082_RS39690;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_001538147.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	2370	4409	.	+	.	ID=gene-CFSAN001082_RS39695;Name=CFSAN001082_RS39695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39695;old_locus_tag=CFSAN001082_16045
NZ_APAH01000317.1	Protein Homology	CDS	2370	4409	.	+	0	ID=cds-WP_023217065.1;Parent=gene-CFSAN001082_RS39695;Dbxref=GenBank:WP_023217065.1;Name=WP_023217065.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460404.1;locus_tag=CFSAN001082_RS39695;product=FUSC family protein;protein_id=WP_023217065.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	4385	4906	.	-	.	ID=gene-CFSAN001082_RS39700;Name=sodC2;gbkey=Gene;gene=sodC2;gene_biotype=protein_coding;gene_synonym=sodCII;locus_tag=CFSAN001082_RS39700;old_locus_tag=CFSAN001082_16050
NZ_APAH01000317.1	Protein Homology	CDS	4385	4906	.	-	0	ID=cds-WP_000826822.1;Parent=gene-CFSAN001082_RS39700;Dbxref=GenBank:WP_000826822.1;Name=WP_000826822.1;gbkey=CDS;gene=sodC2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460403.1;locus_tag=CFSAN001082_RS39700;product=superoxide dismutase [Cu-Zn] SodC2;protein_id=WP_000826822.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	4986	5882	.	-	.	ID=gene-CFSAN001082_RS39705;Name=CFSAN001082_RS39705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39705;old_locus_tag=CFSAN001082_16055
NZ_APAH01000317.1	Protein Homology	CDS	4986	5882	.	-	0	ID=cds-WP_000250721.1;Parent=gene-CFSAN001082_RS39705;Dbxref=GenBank:WP_000250721.1;Name=WP_000250721.1;Ontology_term=GO:0016491,GO:0050661;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460402.1;locus_tag=CFSAN001082_RS39705;product=aldo/keto reductase;protein_id=WP_000250721.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	5933	6172	.	-	.	ID=gene-CFSAN001082_RS39710;Name=CFSAN001082_RS39710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39710;old_locus_tag=CFSAN001082_16060
NZ_APAH01000317.1	Protein Homology	CDS	5933	6172	.	-	0	ID=cds-WP_001538148.1;Parent=gene-CFSAN001082_RS39710;Dbxref=GenBank:WP_001538148.1;Name=WP_001538148.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460401.1;locus_tag=CFSAN001082_RS39710;product=DUF1289 domain-containing protein;protein_id=WP_001538148.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	6275	6874	.	+	.	ID=gene-CFSAN001082_RS39715;Name=CFSAN001082_RS39715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39715;old_locus_tag=CFSAN001082_16065
NZ_APAH01000317.1	Protein Homology	CDS	6275	6874	.	+	0	ID=cds-WP_001041823.1;Parent=gene-CFSAN001082_RS39715;Dbxref=GenBank:WP_001041823.1;Name=WP_001041823.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460400.1;locus_tag=CFSAN001082_RS39715;product=TetR/AcrR family transcriptional regulator;protein_id=WP_001041823.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	6933	8030	.	+	.	ID=gene-CFSAN001082_RS39720;Name=CFSAN001082_RS39720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39720;old_locus_tag=CFSAN001082_16070
NZ_APAH01000317.1	Protein Homology	CDS	6933	8030	.	+	0	ID=cds-WP_023254587.1;Parent=gene-CFSAN001082_RS39720;Dbxref=GenBank:WP_023254587.1;Name=WP_023254587.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460399.1;locus_tag=CFSAN001082_RS39720;product=alkene reductase;protein_id=WP_023254587.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	8099	8506	.	+	.	ID=gene-CFSAN001082_RS39725;Name=gloA;gbkey=Gene;gene=gloA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39725;old_locus_tag=CFSAN001082_16075
NZ_APAH01000317.1	Protein Homology	CDS	8099	8506	.	+	0	ID=cds-WP_001237787.1;Parent=gene-CFSAN001082_RS39725;Dbxref=GenBank:WP_001237787.1;Name=WP_001237787.1;gbkey=CDS;gene=gloA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008500591.1;locus_tag=CFSAN001082_RS39725;product=lactoylglutathione lyase;protein_id=WP_001237787.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	8607	9254	.	+	.	ID=gene-CFSAN001082_RS39730;Name=rnt;gbkey=Gene;gene=rnt;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39730;old_locus_tag=CFSAN001082_16080
NZ_APAH01000317.1	Protein Homology	CDS	8607	9254	.	+	0	ID=cds-WP_001282272.1;Parent=gene-CFSAN001082_RS39730;Dbxref=GenBank:WP_001282272.1;Name=WP_001282272.1;Ontology_term=GO:0006364,GO:0042780,GO:0016896;gbkey=CDS;gene=rnt;go_function=RNA exonuclease activity%2C producing 5'-phosphomonoesters|0016896||IEA;go_process=rRNA processing|0006364||IEA,tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460397.1;locus_tag=CFSAN001082_RS39730;product=ribonuclease T;protein_id=WP_001282272.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	9332	9679	.	-	.	ID=gene-CFSAN001082_RS39735;Name=grxD;gbkey=Gene;gene=grxD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39735;old_locus_tag=CFSAN001082_16085
NZ_APAH01000317.1	Protein Homology	CDS	9332	9679	.	-	0	ID=cds-WP_000108176.1;Parent=gene-CFSAN001082_RS39735;Dbxref=GenBank:WP_000108176.1;Name=WP_000108176.1;gbkey=CDS;gene=grxD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460396.1;locus_tag=CFSAN001082_RS39735;product=monothiol glutaredoxin 4;protein_id=WP_000108176.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	10014	10835	.	+	.	ID=gene-CFSAN001082_RS39740;Name=CFSAN001082_RS39740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39740;old_locus_tag=CFSAN001082_16090
NZ_APAH01000317.1	Protein Homology	CDS	10014	10835	.	+	0	ID=cds-WP_001520344.1;Parent=gene-CFSAN001082_RS39740;Dbxref=GenBank:WP_001520344.1;Name=WP_001520344.1;Ontology_term=GO:0000270,GO:0006508,GO:0008233,GO:0008234,GO:0016787;gbkey=CDS;go_function=peptidase activity|0008233||IEA,cysteine-type peptidase activity|0008234||IEA,hydrolase activity|0016787||IEA;go_process=peptidoglycan metabolic process|0000270||IEA,proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310391.1;locus_tag=CFSAN001082_RS39740;product=C40 family peptidase;protein_id=WP_001520344.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	10962	11543	.	+	.	ID=gene-CFSAN001082_RS39745;Name=sodB;gbkey=Gene;gene=sodB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39745;old_locus_tag=CFSAN001082_16095
NZ_APAH01000317.1	Protein Homology	CDS	10962	11543	.	+	0	ID=cds-WP_000007299.1;Parent=gene-CFSAN001082_RS39745;Dbxref=GenBank:WP_000007299.1;Name=WP_000007299.1;Ontology_term=GO:0006801,GO:0004784,GO:0046872;gbkey=CDS;gene=sodB;go_function=superoxide dismutase activity|0004784||IEA,metal ion binding|0046872||IEA;go_process=superoxide metabolic process|0006801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460394.1;locus_tag=CFSAN001082_RS39745;product=superoxide dismutase [Fe];protein_id=WP_000007299.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	11626	11715	.	-	.	ID=gene-CFSAN001082_RS48340;Name=CFSAN001082_RS48340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48340;old_locus_tag=CFSAN001082_16100
NZ_APAH01000317.1	Protein Homology	CDS	11626	11715	.	-	0	ID=cds-WP_000102277.1;Parent=gene-CFSAN001082_RS48340;Dbxref=GenBank:WP_000102277.1;Name=WP_000102277.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165321.1;locus_tag=CFSAN001082_RS48340;product=YnhF family membrane protein;protein_id=WP_000102277.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	12011	13036	.	+	.	ID=gene-CFSAN001082_RS39750;Name=purR;gbkey=Gene;gene=purR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39750;old_locus_tag=CFSAN001082_16105
NZ_APAH01000317.1	Protein Homology	CDS	12011	13036	.	+	0	ID=cds-WP_000190992.1;Parent=gene-CFSAN001082_RS39750;Dbxref=GenBank:WP_000190992.1;Name=WP_000190992.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=purR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005127190.1;locus_tag=CFSAN001082_RS39750;product=HTH-type transcriptional repressor PurR;protein_id=WP_000190992.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	13033	13965	.	-	.	ID=gene-CFSAN001082_RS39755;Name=punR;gbkey=Gene;gene=punR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39755;old_locus_tag=CFSAN001082_16110
NZ_APAH01000317.1	Protein Homology	CDS	13033	13965	.	-	0	ID=cds-WP_000269523.1;Parent=gene-CFSAN001082_RS39755;Dbxref=GenBank:WP_000269523.1;Name=WP_000269523.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=punR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460392.1;locus_tag=CFSAN001082_RS39755;product=DNA-binding transcriptional activator PunR;protein_id=WP_000269523.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	14078	15283	.	+	.	ID=gene-CFSAN001082_RS39760;Name=punC;gbkey=Gene;gene=punC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39760;old_locus_tag=CFSAN001082_16115
NZ_APAH01000317.1	Protein Homology	CDS	14078	15283	.	+	0	ID=cds-WP_023254588.1;Parent=gene-CFSAN001082_RS39760;Dbxref=GenBank:WP_023254588.1;Name=WP_023254588.1;Ontology_term=GO:1990961,GO:0042910,GO:0016020;gbkey=CDS;gene=punC;go_component=membrane|0016020||IEA;go_function=xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460391.1;locus_tag=CFSAN001082_RS39760;product=purine nucleoside transporter PunC;protein_id=WP_023254588.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	15573	16721	.	+	.	ID=gene-CFSAN001082_RS39765;Name=cfa;gbkey=Gene;gene=cfa;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39765;old_locus_tag=CFSAN001082_16120
NZ_APAH01000317.1	Protein Homology	CDS	15573	16721	.	+	0	ID=cds-WP_023254589.1;Parent=gene-CFSAN001082_RS39765;Dbxref=GenBank:WP_023254589.1;Name=WP_023254589.1;gbkey=CDS;gene=cfa;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460390.1;locus_tag=CFSAN001082_RS39765;product=cyclopropane fatty acyl phospholipid synthase;protein_id=WP_023254589.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	16763	17404	.	-	.	ID=gene-CFSAN001082_RS39770;Name=CFSAN001082_RS39770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39770;old_locus_tag=CFSAN001082_16125
NZ_APAH01000317.1	Protein Homology	CDS	16763	17404	.	-	0	ID=cds-WP_000493971.1;Parent=gene-CFSAN001082_RS39770;Dbxref=GenBank:WP_000493971.1;Name=WP_000493971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460389.1;locus_tag=CFSAN001082_RS39770;product=riboflavin synthase;protein_id=WP_000493971.1;transl_table=11
NZ_APAH01000317.1	RefSeq	gene	17621	18994	.	+	.	ID=gene-CFSAN001082_RS39775;Name=mdtK;gbkey=Gene;gene=mdtK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39775;old_locus_tag=CFSAN001082_16130
NZ_APAH01000317.1	Protein Homology	CDS	17621	18994	.	+	0	ID=cds-WP_001175081.1;Parent=gene-CFSAN001082_RS39775;Dbxref=GenBank:WP_001175081.1;Name=WP_001175081.1;gbkey=CDS;gene=mdtK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460388.2;locus_tag=CFSAN001082_RS39775;product=multidrug efflux MATE transporter MdtK;protein_id=WP_001175081.1;transl_table=11
##sequence-region NZ_APAH01000318.1 1 7872
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000318.1	RefSeq	region	1	7872	.	+	.	ID=NZ_APAH01000318.1:1..7872;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000318.1	RefSeq	gene	178	861	.	+	.	ID=gene-CFSAN001082_RS39780;Name=CFSAN001082_RS39780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39780;old_locus_tag=CFSAN001082_16135
NZ_APAH01000318.1	Protein Homology	CDS	178	861	.	+	0	ID=cds-WP_023138738.1;Parent=gene-CFSAN001082_RS39780;Dbxref=GenBank:WP_023138738.1;Name=WP_023138738.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462039.1;locus_tag=CFSAN001082_RS39780;product=helix-turn-helix transcriptional regulator;protein_id=WP_023138738.1;transl_table=11
NZ_APAH01000318.1	RefSeq	gene	966	1523	.	-	.	ID=gene-CFSAN001082_RS39785;Name=CFSAN001082_RS39785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39785;old_locus_tag=CFSAN001082_16140
NZ_APAH01000318.1	Protein Homology	CDS	966	1523	.	-	0	ID=cds-WP_023254590.1;Parent=gene-CFSAN001082_RS39785;Dbxref=GenBank:WP_023254590.1;Name=WP_023254590.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462040.1;locus_tag=CFSAN001082_RS39785;product=DUF3156 family protein;protein_id=WP_023254590.1;transl_table=11
NZ_APAH01000318.1	RefSeq	gene	1501	3000	.	-	.	ID=gene-CFSAN001082_RS39790;Name=CFSAN001082_RS39790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39790;old_locus_tag=CFSAN001082_16145
NZ_APAH01000318.1	Protein Homology	CDS	1501	3000	.	-	0	ID=cds-WP_000475953.1;Parent=gene-CFSAN001082_RS39790;Dbxref=GenBank:WP_000475953.1;Name=WP_000475953.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462041.1;locus_tag=CFSAN001082_RS39790;product=APC family permease;protein_id=WP_000475953.1;transl_table=11
NZ_APAH01000318.1	RefSeq	gene	3209	3583	.	-	.	ID=gene-CFSAN001082_RS39795;Name=CFSAN001082_RS39795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39795;old_locus_tag=CFSAN001082_16150
NZ_APAH01000318.1	Protein Homology	CDS	3209	3583	.	-	0	ID=cds-WP_000542984.1;Parent=gene-CFSAN001082_RS39795;Dbxref=GenBank:WP_000542984.1;Name=WP_000542984.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462042.1;locus_tag=CFSAN001082_RS39795;product=cupin domain-containing protein;protein_id=WP_000542984.1;transl_table=11
NZ_APAH01000318.1	RefSeq	gene	3598	4899	.	-	.	ID=gene-CFSAN001082_RS39800;Name=CFSAN001082_RS39800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39800;old_locus_tag=CFSAN001082_16155
NZ_APAH01000318.1	Protein Homology	CDS	3598	4899	.	-	0	ID=cds-WP_001092825.1;Parent=gene-CFSAN001082_RS39800;Dbxref=GenBank:WP_001092825.1;Name=WP_001092825.1;Ontology_term=GO:0016491,GO:0050660;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462043.1;locus_tag=CFSAN001082_RS39800;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_001092825.1;transl_table=11
NZ_APAH01000318.1	RefSeq	gene	5061	6545	.	+	.	ID=gene-CFSAN001082_RS39805;Name=CFSAN001082_RS39805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39805;old_locus_tag=CFSAN001082_16160
NZ_APAH01000318.1	Protein Homology	CDS	5061	6545	.	+	0	ID=cds-WP_023254591.1;Parent=gene-CFSAN001082_RS39805;Dbxref=GenBank:WP_023254591.1;Name=WP_023254591.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462044.1;locus_tag=CFSAN001082_RS39805;product=NAD-dependent phenylacetaldehyde dehydrogenase;protein_id=WP_023254591.1;transl_table=11
NZ_APAH01000318.1	RefSeq	gene	6680	7060	.	-	.	ID=gene-CFSAN001082_RS0123750;Name=iraD;gbkey=Gene;gene=iraD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123750
NZ_APAH01000318.1	Protein Homology	CDS	6680	7060	.	-	0	ID=cds-WP_001543513.1;Parent=gene-CFSAN001082_RS0123750;Dbxref=GenBank:WP_001543513.1;Name=WP_001543513.1;gbkey=CDS;gene=iraD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462045.1;locus_tag=CFSAN001082_RS0123750;product=anti-adapter protein IraD;protein_id=WP_001543513.1;transl_table=11
NZ_APAH01000318.1	RefSeq	gene	7060	7545	.	-	.	ID=gene-CFSAN001082_RS39810;Name=CFSAN001082_RS39810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39810;old_locus_tag=CFSAN001082_16170
NZ_APAH01000318.1	Protein Homology	CDS	7060	7545	.	-	0	ID=cds-WP_023254592.1;Parent=gene-CFSAN001082_RS39810;Dbxref=GenBank:WP_023254592.1;Name=WP_023254592.1;Ontology_term=GO:0033103;gbkey=CDS;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462046.1;locus_tag=CFSAN001082_RS39810;product=Hcp family type VI secretion system effector;protein_id=WP_023254592.1;transl_table=11
##sequence-region NZ_APAH01000319.1 1 17472
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000319.1	RefSeq	region	1	17472	.	+	.	ID=NZ_APAH01000319.1:1..17472;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000319.1	RefSeq	gene	1	194	.	+	.	ID=gene-CFSAN001082_RS0123755;Name=CFSAN001082_RS0123755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123755;old_locus_tag=CFSAN001082_16180;partial=true;start_range=.,1
NZ_APAH01000319.1	Protein Homology	CDS	1	194	.	+	2	ID=cds-WP_023254593.1;Parent=gene-CFSAN001082_RS0123755;Dbxref=GenBank:WP_023254593.1;Name=WP_023254593.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459105.1;locus_tag=CFSAN001082_RS0123755;partial=true;product=DUF4751 family protein;protein_id=WP_023254593.1;start_range=.,1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	200	895	.	-	.	ID=gene-CFSAN001082_RS39815;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39815;old_locus_tag=CFSAN001082_16185
NZ_APAH01000319.1	Protein Homology	CDS	200	895	.	-	0	ID=cds-WP_023254594.1;Parent=gene-CFSAN001082_RS39815;Dbxref=GenBank:WP_023254594.1;Name=WP_023254594.1;Ontology_term=GO:0019568,GO:0008270,GO:0008742;gbkey=CDS;gene=araD;go_function=zinc ion binding|0008270||IEA,L-ribulose-phosphate 4-epimerase activity|0008742||IEA;go_process=arabinose catabolic process|0019568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459106.1;locus_tag=CFSAN001082_RS39815;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_023254594.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	1036	2538	.	-	.	ID=gene-CFSAN001082_RS39820;Name=araA;gbkey=Gene;gene=araA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39820;old_locus_tag=CFSAN001082_16190
NZ_APAH01000319.1	Protein Homology	CDS	1036	2538	.	-	0	ID=cds-WP_023254595.1;Parent=gene-CFSAN001082_RS39820;Dbxref=GenBank:WP_023254595.1;Name=WP_023254595.1;Ontology_term=GO:0005996,GO:0008733;gbkey=CDS;gene=araA;go_function=L-arabinose isomerase activity|0008733||IEA;go_process=monosaccharide metabolic process|0005996||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459107.1;locus_tag=CFSAN001082_RS39820;product=L-arabinose isomerase;protein_id=WP_023254595.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	2549	4258	.	-	.	ID=gene-CFSAN001082_RS39825;Name=araB;gbkey=Gene;gene=araB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39825;old_locus_tag=CFSAN001082_16195
NZ_APAH01000319.1	Protein Homology	CDS	2549	4258	.	-	0	ID=cds-WP_020839598.1;Parent=gene-CFSAN001082_RS39825;Dbxref=GenBank:WP_020839598.1;Name=WP_020839598.1;Ontology_term=GO:0019568,GO:0005524,GO:0008741;gbkey=CDS;gene=araB;go_function=ATP binding|0005524||IEA,ribulokinase activity|0008741||IEA;go_process=arabinose catabolic process|0019568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459108.1;locus_tag=CFSAN001082_RS39825;product=ribulokinase;protein_id=WP_020839598.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	4598	5443	.	+	.	ID=gene-CFSAN001082_RS39830;Name=araC;gbkey=Gene;gene=araC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39830;old_locus_tag=CFSAN001082_16200
NZ_APAH01000319.1	Protein Homology	CDS	4598	5443	.	+	0	ID=cds-WP_000852387.1;Parent=gene-CFSAN001082_RS39830;Dbxref=GenBank:WP_000852387.1;Name=WP_000852387.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=araC;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459109.1;locus_tag=CFSAN001082_RS39830;product=arabinose operon transcriptional regulator AraC;protein_id=WP_000852387.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	5562	6329	.	+	.	ID=gene-CFSAN001082_RS39835;Name=CFSAN001082_RS39835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39835;old_locus_tag=CFSAN001082_16205
NZ_APAH01000319.1	Protein Homology	CDS	5562	6329	.	+	0	ID=cds-WP_001148369.1;Parent=gene-CFSAN001082_RS39835;Dbxref=GenBank:WP_001148369.1;Name=WP_001148369.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459110.1;locus_tag=CFSAN001082_RS39835;product=DedA family protein;protein_id=WP_001148369.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	6368	7075	.	-	.	ID=gene-CFSAN001082_RS39840;Name=thiQ;gbkey=Gene;gene=thiQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39840;old_locus_tag=CFSAN001082_16210
NZ_APAH01000319.1	Protein Homology	CDS	6368	7075	.	-	0	ID=cds-WP_023225648.1;Parent=gene-CFSAN001082_RS39840;Dbxref=GenBank:WP_023225648.1;Name=WP_023225648.1;gbkey=CDS;gene=thiQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459111.1;locus_tag=CFSAN001082_RS39840;product=thiamine ABC transporter ATP-binding protein ThiQ;protein_id=WP_023225648.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	7059	8669	.	-	.	ID=gene-CFSAN001082_RS39845;Name=thiP;gbkey=Gene;gene=thiP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39845;old_locus_tag=CFSAN001082_16215
NZ_APAH01000319.1	Protein Homology	CDS	7059	8669	.	-	0	ID=cds-WP_000235636.1;Parent=gene-CFSAN001082_RS39845;Dbxref=GenBank:WP_000235636.1;Name=WP_000235636.1;gbkey=CDS;gene=thiP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459112.1;locus_tag=CFSAN001082_RS39845;product=thiamine/thiamine pyrophosphate ABC transporter permease ThiP;protein_id=WP_000235636.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	8645	9628	.	-	.	ID=gene-CFSAN001082_RS39850;Name=thiB;gbkey=Gene;gene=thiB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39850;old_locus_tag=CFSAN001082_16220
NZ_APAH01000319.1	Protein Homology	CDS	8645	9628	.	-	0	ID=cds-WP_000915322.1;Parent=gene-CFSAN001082_RS39850;Dbxref=GenBank:WP_000915322.1;Name=WP_000915322.1;Ontology_term=GO:0015888,GO:0030975,GO:0048502,GO:0030288,GO:0055052;gbkey=CDS;gene=thiB;go_component=outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=thiamine binding|0030975||IEA,ABC-type thiamine transporter activity|0048502||IEA;go_process=thiamine transport|0015888||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459113.1;locus_tag=CFSAN001082_RS39850;product=thiamine ABC transporter substrate binding subunit;protein_id=WP_000915322.1;transl_table=11
NZ_APAH01000319.1	cmsearch	riboswitch	9660	9759	.	-	.	ID=id-NZ_APAH01000319.1:9660..9759;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_APAH01000319.1	RefSeq	gene	9806	11464	.	-	.	ID=gene-CFSAN001082_RS39855;Name=sgrR;gbkey=Gene;gene=sgrR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39855;old_locus_tag=CFSAN001082_16225
NZ_APAH01000319.1	Protein Homology	CDS	9806	11464	.	-	0	ID=cds-WP_023254596.1;Parent=gene-CFSAN001082_RS39855;Dbxref=GenBank:WP_023254596.1;Name=WP_023254596.1;gbkey=CDS;gene=sgrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459114.1;locus_tag=CFSAN001082_RS39855;product=HTH-type transcriptional regulator SgrR;protein_id=WP_023254596.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	11557	11679	.	+	.	ID=gene-CFSAN001082_RS39860;Name=sgrT;gbkey=Gene;gene=sgrT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39860;old_locus_tag=CFSAN001082_16230
NZ_APAH01000319.1	Protein Homology	CDS	11557	11679	.	+	0	ID=cds-WP_001248755.1;Parent=gene-CFSAN001082_RS39860;Dbxref=GenBank:WP_001248755.1;Name=WP_001248755.1;Ontology_term=GO:0046325;gbkey=CDS;gene=sgrT;go_process=negative regulation of D-glucose import|0046325||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001248755.1;locus_tag=CFSAN001082_RS39860;product=glucose uptake inhibitor SgrT;protein_id=WP_001248755.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	11999	12280	.	+	.	ID=gene-CFSAN001082_RS39865;Name=CFSAN001082_RS39865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39865;old_locus_tag=CFSAN001082_16235
NZ_APAH01000319.1	Protein Homology	CDS	11999	12280	.	+	0	ID=cds-WP_000755258.1;Parent=gene-CFSAN001082_RS39865;Dbxref=GenBank:WP_000755258.1;Name=WP_000755258.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011264185.1;locus_tag=CFSAN001082_RS39865;product=DUF5339 family protein;protein_id=WP_000755258.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	12334	12939	.	-	.	ID=gene-CFSAN001082_RS39870;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39870;old_locus_tag=CFSAN001082_16240
NZ_APAH01000319.1	Protein Homology	CDS	12334	12939	.	-	0	ID=cds-WP_000818265.1;Parent=gene-CFSAN001082_RS39870;Dbxref=GenBank:WP_000818265.1;Name=WP_000818265.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuD;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459115.1;locus_tag=CFSAN001082_RS39870;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_000818265.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	12950	14350	.	-	.	ID=gene-CFSAN001082_RS39875;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39875;old_locus_tag=CFSAN001082_16245
NZ_APAH01000319.1	Protein Homology	CDS	12950	14350	.	-	0	ID=cds-WP_023254597.1;Parent=gene-CFSAN001082_RS39875;Dbxref=GenBank:WP_023254597.1;Name=WP_023254597.1;Ontology_term=GO:0009098,GO:0003861,GO:0051539,GO:0009316;gbkey=CDS;gene=leuC;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459116.1;locus_tag=CFSAN001082_RS39875;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_023254597.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	14353	15444	.	-	.	ID=gene-CFSAN001082_RS39880;Name=leuB;gbkey=Gene;gene=leuB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39880;old_locus_tag=CFSAN001082_16250
NZ_APAH01000319.1	Protein Homology	CDS	14353	15444	.	-	0	ID=cds-WP_000042336.1;Parent=gene-CFSAN001082_RS39880;Dbxref=GenBank:WP_000042336.1;Name=WP_000042336.1;Ontology_term=GO:0009098,GO:0003862;gbkey=CDS;gene=leuB;go_function=3-isopropylmalate dehydrogenase activity|0003862||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124544.1;locus_tag=CFSAN001082_RS39880;product=3-isopropylmalate dehydrogenase;protein_id=WP_000042336.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	15444	17015	.	-	.	ID=gene-CFSAN001082_RS39885;Name=leuA;gbkey=Gene;gene=leuA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39885;old_locus_tag=CFSAN001082_16255
NZ_APAH01000319.1	Protein Homology	CDS	15444	17015	.	-	0	ID=cds-WP_000082819.1;Parent=gene-CFSAN001082_RS39885;Dbxref=GenBank:WP_000082819.1;Name=WP_000082819.1;Ontology_term=GO:0019752,GO:0003852;gbkey=CDS;gene=leuA;go_function=2-isopropylmalate synthase activity|0003852||IEA;go_process=carboxylic acid metabolic process|0019752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016831521.1;locus_tag=CFSAN001082_RS39885;product=2-isopropylmalate synthase;protein_id=WP_000082819.1;transl_table=11
NZ_APAH01000319.1	RefSeq	gene	17103	17189	.	-	.	ID=gene-CFSAN001082_RS39890;Name=leuL;gbkey=Gene;gene=leuL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39890;old_locus_tag=CFSAN001082_16260
NZ_APAH01000319.1	Protein Homology	CDS	17103	17189	.	-	0	ID=cds-WP_001575587.1;Parent=gene-CFSAN001082_RS39890;Dbxref=GenBank:WP_001575587.1;Name=WP_001575587.1;gbkey=CDS;gene=leuL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459119.1;locus_tag=CFSAN001082_RS39890;product=leu operon leader peptide;protein_id=WP_001575587.1;transl_table=11
##sequence-region NZ_APAH01000320.1 1 224
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000320.1	RefSeq	region	1	224	.	+	.	ID=NZ_APAH01000320.1:1..224;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000320.1	RefSeq	gene	1	164	.	+	.	ID=gene-CFSAN001082_RS48960;Name=CFSAN001082_RS48960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48960;partial=true;start_range=.,1
NZ_APAH01000320.1	Protein Homology	CDS	1	164	.	+	2	ID=cds-WP_031612974.1;Parent=gene-CFSAN001082_RS48960;Dbxref=GenBank:WP_031612974.1;Name=WP_031612974.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF042415.1;locus_tag=CFSAN001082_RS48960;partial=true;product=STY0301 family protein;protein_id=WP_031612974.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000321.1 1 2230
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000321.1	RefSeq	region	1	2230	.	+	.	ID=NZ_APAH01000321.1:1..2230;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000321.1	RefSeq	gene	306	1100	.	+	.	ID=gene-CFSAN001082_RS39895;Name=pduF;gbkey=Gene;gene=pduF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39895;old_locus_tag=CFSAN001082_16265
NZ_APAH01000321.1	Protein Homology	CDS	306	1100	.	+	0	ID=cds-WP_001000023.1;Parent=gene-CFSAN001082_RS39895;Dbxref=GenBank:WP_001000023.1;Name=WP_001000023.1;gbkey=CDS;gene=pduF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460982.1;locus_tag=CFSAN001082_RS39895;product=propanediol diffusion facilitator PduF;protein_id=WP_001000023.1;transl_table=11
NZ_APAH01000321.1	RefSeq	gene	1317	2228	.	+	.	ID=gene-CFSAN001082_RS39900;Name=pocR;gbkey=Gene;gene=pocR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39900;old_locus_tag=CFSAN001082_16270
NZ_APAH01000321.1	Protein Homology	CDS	1317	2228	.	+	0	ID=cds-WP_023205654.1;Parent=gene-CFSAN001082_RS39900;Dbxref=GenBank:WP_023205654.1;Name=WP_023205654.1;Ontology_term=GO:0009236,GO:0051144,GO:0003700,GO:0043565;gbkey=CDS;gene=pocR;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=cobalamin biosynthetic process|0009236||IEA,propanediol catabolic process|0051144||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460981.1;locus_tag=CFSAN001082_RS39900;product=transcriptional regulator PocR;protein_id=WP_023205654.1;transl_table=11
##sequence-region NZ_APAH01000322.1 1 354
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000322.1	RefSeq	region	1	354	.	+	.	ID=NZ_APAH01000322.1:1..354;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000322.1	RefSeq	pseudogene	1	215	.	+	.	ID=gene-CFSAN001082_RS48965;Name=CFSAN001082_RS48965;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48965;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000322.1	Protein Homology	CDS	1	215	.	+	2	ID=cds-CFSAN001082_RS48965;Parent=gene-CFSAN001082_RS48965;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016154996.1;locus_tag=CFSAN001082_RS48965;partial=true;product=acyl-CoA dehydrogenase;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000323.1 1 8785
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000323.1	RefSeq	region	1	8785	.	+	.	ID=NZ_APAH01000323.1:1..8785;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000323.1	RefSeq	gene	1	510	.	+	.	ID=gene-CFSAN001082_RS39905;Name=stkA;gbkey=Gene;gene=stkA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39905;old_locus_tag=CFSAN001082_16275;partial=true;start_range=.,1
NZ_APAH01000323.1	Protein Homology	CDS	1	510	.	+	0	ID=cds-WP_023254598.1;Parent=gene-CFSAN001082_RS39905;Dbxref=GenBank:WP_023254598.1;Name=WP_023254598.1;gbkey=CDS;gene=stkA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000466117.1;locus_tag=CFSAN001082_RS39905;partial=true;product=Stk fimbria major subunit StkA;protein_id=WP_023254598.1;start_range=.,1;transl_table=11
NZ_APAH01000323.1	RefSeq	gene	597	1349	.	+	.	ID=gene-CFSAN001082_RS39910;Name=CFSAN001082_RS39910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39910;old_locus_tag=CFSAN001082_16280
NZ_APAH01000323.1	Protein Homology	CDS	597	1349	.	+	0	ID=cds-WP_023254599.1;Parent=gene-CFSAN001082_RS39910;Dbxref=GenBank:WP_023254599.1;Name=WP_023254599.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000248438.1;locus_tag=CFSAN001082_RS39910;product=fimbrial chaperone;protein_id=WP_023254599.1;transl_table=11
NZ_APAH01000323.1	RefSeq	gene	1417	4014	.	+	.	ID=gene-CFSAN001082_RS39915;Name=CFSAN001082_RS39915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39915;old_locus_tag=CFSAN001082_16285
NZ_APAH01000323.1	Protein Homology	CDS	1417	4014	.	+	0	ID=cds-WP_023254600.1;Parent=gene-CFSAN001082_RS39915;Dbxref=GenBank:WP_023254600.1;Name=WP_023254600.1;Ontology_term=GO:0009297,GO:0005515,GO:0015473,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA,fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441536.1;locus_tag=CFSAN001082_RS39915;product=outer membrane usher protein;protein_id=WP_023254600.1;transl_table=11
NZ_APAH01000323.1	RefSeq	gene	4037	4621	.	+	.	ID=gene-CFSAN001082_RS39920;Name=CFSAN001082_RS39920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39920;old_locus_tag=CFSAN001082_16290
NZ_APAH01000323.1	Protein Homology	CDS	4037	4621	.	+	0	ID=cds-WP_001267119.1;Parent=gene-CFSAN001082_RS39920;Dbxref=GenBank:WP_001267119.1;Name=WP_001267119.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001267117.1;locus_tag=CFSAN001082_RS39920;product=fimbrial protein;protein_id=WP_001267119.1;transl_table=11
NZ_APAH01000323.1	RefSeq	gene	4648	5205	.	+	.	ID=gene-CFSAN001082_RS39925;Name=CFSAN001082_RS39925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39925;old_locus_tag=CFSAN001082_16295
NZ_APAH01000323.1	Protein Homology	CDS	4648	5205	.	+	0	ID=cds-WP_000673424.1;Parent=gene-CFSAN001082_RS39925;Dbxref=GenBank:WP_000673424.1;Name=WP_000673424.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016504756.1;locus_tag=CFSAN001082_RS39925;product=fimbrial protein;protein_id=WP_000673424.1;transl_table=11
NZ_APAH01000323.1	RefSeq	gene	5224	5823	.	+	.	ID=gene-CFSAN001082_RS39930;Name=CFSAN001082_RS39930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39930;old_locus_tag=CFSAN001082_16300
NZ_APAH01000323.1	Protein Homology	CDS	5224	5823	.	+	0	ID=cds-WP_023254601.1;Parent=gene-CFSAN001082_RS39930;Dbxref=GenBank:WP_023254601.1;Name=WP_023254601.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001186618.1;locus_tag=CFSAN001082_RS39930;product=fimbrial-like protein;protein_id=WP_023254601.1;transl_table=11
NZ_APAH01000323.1	RefSeq	gene	5835	6896	.	+	.	ID=gene-CFSAN001082_RS39935;Name=CFSAN001082_RS39935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39935;old_locus_tag=CFSAN001082_16305
NZ_APAH01000323.1	Protein Homology	CDS	5835	6896	.	+	0	ID=cds-WP_023254602.1;Parent=gene-CFSAN001082_RS39935;Dbxref=GenBank:WP_023254602.1;Name=WP_023254602.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506595.1;locus_tag=CFSAN001082_RS39935;product=fimbrial protein StkG;protein_id=WP_023254602.1;transl_table=11
NZ_APAH01000323.1	RefSeq	gene	6898	8127	.	-	.	ID=gene-CFSAN001082_RS39940;Name=CFSAN001082_RS39940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39940;old_locus_tag=CFSAN001082_16310
NZ_APAH01000323.1	Protein Homology	CDS	6898	8127	.	-	0	ID=cds-WP_000245316.1;Parent=gene-CFSAN001082_RS39940;Dbxref=GenBank:WP_000245316.1;Name=WP_000245316.1;Ontology_term=GO:0005975,GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459184.1;locus_tag=CFSAN001082_RS39940;product=polysaccharide deacetylase family protein;protein_id=WP_000245316.1;transl_table=11
NZ_APAH01000323.1	RefSeq	gene	8189	8629	.	-	.	ID=gene-CFSAN001082_RS39945;Name=CFSAN001082_RS39945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39945;old_locus_tag=CFSAN001082_16315
NZ_APAH01000323.1	Protein Homology	CDS	8189	8629	.	-	0	ID=cds-WP_000901958.1;Parent=gene-CFSAN001082_RS39945;Dbxref=GenBank:WP_000901958.1;Name=WP_000901958.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459183.1;locus_tag=CFSAN001082_RS39945;product=PTS sugar transporter subunit IIA;protein_id=WP_000901958.1;transl_table=11
##sequence-region NZ_APAH01000324.1 1 17029
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000324.1	RefSeq	region	1	17029	.	+	.	ID=NZ_APAH01000324.1:1..17029;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000324.1	RefSeq	gene	232	882	.	+	.	ID=gene-CFSAN001082_RS39950;Name=invF;gbkey=Gene;gene=invF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39950;old_locus_tag=CFSAN001082_16325
NZ_APAH01000324.1	Protein Homology	CDS	232	882	.	+	0	ID=cds-WP_001728903.1;Parent=gene-CFSAN001082_RS39950;Dbxref=GenBank:WP_001728903.1;Name=WP_001728903.1;gbkey=CDS;gene=invF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461820.1;locus_tag=CFSAN001082_RS39950;product=type III secretion system transcriptional activator InvF;protein_id=WP_001728903.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	879	2567	.	+	.	ID=gene-CFSAN001082_RS39955;Name=invG;gbkey=Gene;gene=invG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39955;old_locus_tag=CFSAN001082_16330
NZ_APAH01000324.1	Protein Homology	CDS	879	2567	.	+	0	ID=cds-WP_000848102.1;Parent=gene-CFSAN001082_RS39955;Dbxref=GenBank:WP_000848102.1;Name=WP_000848102.1;gbkey=CDS;gene=invG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461819.1;locus_tag=CFSAN001082_RS39955;product=type III secretion system outer membrane ring protein InvG;protein_id=WP_000848102.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	2564	3682	.	+	.	ID=gene-CFSAN001082_RS39960;Name=invE;gbkey=Gene;gene=invE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39960;old_locus_tag=CFSAN001082_16335
NZ_APAH01000324.1	Protein Homology	CDS	2564	3682	.	+	0	ID=cds-WP_000612171.1;Parent=gene-CFSAN001082_RS39960;Dbxref=GenBank:WP_000612171.1;Name=WP_000612171.1;gbkey=CDS;gene=invE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461818.1;locus_tag=CFSAN001082_RS39960;product=type III secretion system gatekeeper InvE;protein_id=WP_000612171.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	3707	5764	.	+	.	ID=gene-CFSAN001082_RS39965;Name=invA;gbkey=Gene;gene=invA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39965;old_locus_tag=CFSAN001082_16340
NZ_APAH01000324.1	Protein Homology	CDS	3707	5764	.	+	0	ID=cds-WP_000927219.1;Parent=gene-CFSAN001082_RS39965;Dbxref=GenBank:WP_000927219.1;Name=WP_000927219.1;gbkey=CDS;gene=invA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461817.1;locus_tag=CFSAN001082_RS39965;product=type III secretion system export apparatus protein InvA;protein_id=WP_000927219.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	5788	6195	.	+	.	ID=gene-CFSAN001082_RS39970;Name=spaK;gbkey=Gene;gene=spaK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39970;old_locus_tag=CFSAN001082_16345
NZ_APAH01000324.1	Protein Homology	CDS	5788	6195	.	+	0	ID=cds-WP_001164066.1;Parent=gene-CFSAN001082_RS39970;Dbxref=GenBank:WP_001164066.1;Name=WP_001164066.1;gbkey=CDS;gene=spaK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461816.1;locus_tag=CFSAN001082_RS39970;product=SPI-1 type III secretion system chaperone SpaK;protein_id=WP_001164066.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	6192	7487	.	+	.	ID=gene-CFSAN001082_RS39975;Name=invC;gbkey=Gene;gene=invC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39975;old_locus_tag=CFSAN001082_16350
NZ_APAH01000324.1	Protein Homology	CDS	6192	7487	.	+	0	ID=cds-WP_000856766.1;Parent=gene-CFSAN001082_RS39975;Dbxref=GenBank:WP_000856766.1;Name=WP_000856766.1;gbkey=CDS;gene=invC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461815.1;locus_tag=CFSAN001082_RS39975;product=SctN family type III secretion system ATPase InvC;protein_id=WP_000856766.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	7465	7908	.	+	.	ID=gene-CFSAN001082_RS39980;Name=spaM;gbkey=Gene;gene=spaM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39980;old_locus_tag=CFSAN001082_16355
NZ_APAH01000324.1	Protein Homology	CDS	7465	7908	.	+	0	ID=cds-WP_000555884.1;Parent=gene-CFSAN001082_RS39980;Dbxref=GenBank:WP_000555884.1;Name=WP_000555884.1;gbkey=CDS;gene=spaM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461814.1;locus_tag=CFSAN001082_RS39980;product=SPI-1 type III secretion system protein SpaM;protein_id=WP_000555884.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	7908	8918	.	+	.	ID=gene-CFSAN001082_RS39985;Name=spaN;gbkey=Gene;gene=spaN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39985;old_locus_tag=CFSAN001082_16360
NZ_APAH01000324.1	Protein Homology	CDS	7908	8918	.	+	0	ID=cds-WP_023137851.1;Parent=gene-CFSAN001082_RS39985;Dbxref=GenBank:WP_023137851.1;Name=WP_023137851.1;gbkey=CDS;gene=spaN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461813.1;locus_tag=CFSAN001082_RS39985;product=SPI-1 type III secretion system protein SpaN;protein_id=WP_023137851.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	8918	9829	.	+	.	ID=gene-CFSAN001082_RS39990;Name=spaO;gbkey=Gene;gene=spaO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39990;old_locus_tag=CFSAN001082_16365
NZ_APAH01000324.1	Protein Homology	CDS	8918	9829	.	+	0	ID=cds-WP_000058726.1;Parent=gene-CFSAN001082_RS39990;Dbxref=GenBank:WP_000058726.1;Name=WP_000058726.1;gbkey=CDS;gene=spaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461812.1;locus_tag=CFSAN001082_RS39990;product=SPI-1 type III secretion system protein SpaO;protein_id=WP_000058726.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	9819	10493	.	+	.	ID=gene-CFSAN001082_RS39995;Name=spaP;gbkey=Gene;gene=spaP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS39995;old_locus_tag=CFSAN001082_16370
NZ_APAH01000324.1	Protein Homology	CDS	9819	10493	.	+	0	ID=cds-WP_000526016.1;Parent=gene-CFSAN001082_RS39995;Dbxref=GenBank:WP_000526016.1;Name=WP_000526016.1;gbkey=CDS;gene=spaP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461811.1;locus_tag=CFSAN001082_RS39995;product=SPI-1 type III secretion system export apparatus protein SpaP;protein_id=WP_000526016.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	10519	10779	.	+	.	ID=gene-CFSAN001082_RS40000;Name=spaQ;gbkey=Gene;gene=spaQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40000;old_locus_tag=CFSAN001082_16375
NZ_APAH01000324.1	Protein Homology	CDS	10519	10779	.	+	0	ID=cds-WP_000342503.1;Parent=gene-CFSAN001082_RS40000;Dbxref=GenBank:WP_000342503.1;Name=WP_000342503.1;gbkey=CDS;gene=spaQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461810.1;locus_tag=CFSAN001082_RS40000;product=SPI-1 type III secretion system export apparatus protein SpaQ;protein_id=WP_000342503.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	10783	11574	.	+	.	ID=gene-CFSAN001082_RS40005;Name=spaR;gbkey=Gene;gene=spaR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40005;old_locus_tag=CFSAN001082_16380
NZ_APAH01000324.1	Protein Homology	CDS	10783	11574	.	+	0	ID=cds-WP_000498965.1;Parent=gene-CFSAN001082_RS40005;Dbxref=GenBank:WP_000498965.1;Name=WP_000498965.1;gbkey=CDS;gene=spaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461809.1;locus_tag=CFSAN001082_RS40005;product=SPI-1 type III secretion system export apparatus protein SpaR;protein_id=WP_000498965.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	11561	12631	.	+	.	ID=gene-CFSAN001082_RS40010;Name=spaS;gbkey=Gene;gene=spaS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40010;old_locus_tag=CFSAN001082_16385
NZ_APAH01000324.1	Protein Homology	CDS	11561	12631	.	+	0	ID=cds-WP_000097719.1;Parent=gene-CFSAN001082_RS40010;Dbxref=GenBank:WP_000097719.1;Name=WP_000097719.1;gbkey=CDS;gene=spaS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461808.1;locus_tag=CFSAN001082_RS40010;product=SPI-1 type III secretion system export apparatus protein SpaS;protein_id=WP_000097719.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	12769	13266	.	+	.	ID=gene-CFSAN001082_RS40015;Name=sicA;gbkey=Gene;gene=sicA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40015;old_locus_tag=CFSAN001082_16390
NZ_APAH01000324.1	Protein Homology	CDS	12769	13266	.	+	0	ID=cds-WP_000386309.1;Parent=gene-CFSAN001082_RS40015;Dbxref=GenBank:WP_000386309.1;Name=WP_000386309.1;gbkey=CDS;gene=sicA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461807.1;locus_tag=CFSAN001082_RS40015;product=SycD/LcrH family type III secretion system chaperone SicA;protein_id=WP_000386309.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	13269	15050	.	+	.	ID=gene-CFSAN001082_RS40020;Name=sipB;gbkey=Gene;gene=sipB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40020;old_locus_tag=CFSAN001082_16395
NZ_APAH01000324.1	Protein Homology	CDS	13269	15050	.	+	0	ID=cds-WP_000245779.1;Parent=gene-CFSAN001082_RS40020;Dbxref=GenBank:WP_000245779.1;Name=WP_000245779.1;gbkey=CDS;gene=sipB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461806.1;locus_tag=CFSAN001082_RS40020;product=SPI-1 type III secretion system needle tip complex protein SipB;protein_id=WP_000245779.1;transl_table=11
NZ_APAH01000324.1	RefSeq	gene	15078	16307	.	+	.	ID=gene-CFSAN001082_RS40025;Name=sipC;gbkey=Gene;gene=sipC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40025;old_locus_tag=CFSAN001082_16400
NZ_APAH01000324.1	Protein Homology	CDS	15078	16307	.	+	0	ID=cds-WP_000909028.1;Parent=gene-CFSAN001082_RS40025;Dbxref=GenBank:WP_000909028.1;Name=WP_000909028.1;gbkey=CDS;gene=sipC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461805.1;locus_tag=CFSAN001082_RS40025;product=SPI-1 type III secretion system needle tip complex protein SipC;protein_id=WP_000909028.1;transl_table=11
NZ_APAH01000324.1	RefSeq	pseudogene	16378	17029	.	+	.	ID=gene-CFSAN001082_RS40030;Name=sipD;end_range=17029,.;gbkey=Gene;gene=sipD;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS40030;old_locus_tag=CFSAN001082_16405;partial=true;pseudo=true
NZ_APAH01000324.1	Protein Homology	CDS	16378	17029	.	+	0	ID=cds-CFSAN001082_RS40030;Parent=gene-CFSAN001082_RS40030;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=17029,.;gbkey=CDS;gene=sipD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461804.1;locus_tag=CFSAN001082_RS40030;partial=true;product=SPI-1 type III secretion system needle tip complex protein SipD;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000325.1 1 3207
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000325.1	RefSeq	region	1	3207	.	+	.	ID=NZ_APAH01000325.1:1..3207;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000325.1	RefSeq	gene	45	1007	.	+	.	ID=gene-CFSAN001082_RS40035;Name=CFSAN001082_RS40035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40035;old_locus_tag=CFSAN001082_16410
NZ_APAH01000325.1	Protein Homology	CDS	45	1007	.	+	0	ID=cds-WP_006497792.1;Parent=gene-CFSAN001082_RS40035;Dbxref=GenBank:WP_006497792.1;Name=WP_006497792.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001530996.1;locus_tag=CFSAN001082_RS40035;product=DMT family transporter;protein_id=WP_006497792.1;transl_table=11
NZ_APAH01000325.1	RefSeq	gene	1095	2090	.	+	.	ID=gene-CFSAN001082_RS40040;Name=gapA;gbkey=Gene;gene=gapA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40040;old_locus_tag=CFSAN001082_16415
NZ_APAH01000325.1	Protein Homology	CDS	1095	2090	.	+	0	ID=cds-WP_000985847.1;Parent=gene-CFSAN001082_RS40040;Dbxref=GenBank:WP_000985847.1;Name=WP_000985847.1;gbkey=CDS;gene=gapA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006322611.1;locus_tag=CFSAN001082_RS40040;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_000985847.1;transl_table=11
NZ_APAH01000325.1	RefSeq	gene	2240	3118	.	-	.	ID=gene-CFSAN001082_RS40045;Name=CFSAN001082_RS40045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40045;old_locus_tag=CFSAN001082_16420
NZ_APAH01000325.1	Protein Homology	CDS	2240	3118	.	-	0	ID=cds-WP_000365361.1;Parent=gene-CFSAN001082_RS40045;Dbxref=GenBank:WP_000365361.1;Name=WP_000365361.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001528334.1;locus_tag=CFSAN001082_RS40045;product=LysR family transcriptional regulator;protein_id=WP_000365361.1;transl_table=11
##sequence-region NZ_APAH01000326.1 1 1636
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000326.1	RefSeq	region	1	1636	.	+	.	ID=NZ_APAH01000326.1:1..1636;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000326.1	RefSeq	gene	1	358	.	-	.	ID=gene-CFSAN001082_RS0123765;Name=CFSAN001082_RS0123765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123765;old_locus_tag=CFSAN001082_16425;partial=true;start_range=.,1
NZ_APAH01000326.1	Protein Homology	CDS	1	358	.	-	0	ID=cds-WP_031612980.1;Parent=gene-CFSAN001082_RS0123765;Dbxref=GenBank:WP_031612980.1;Name=WP_031612980.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001529980.1;locus_tag=CFSAN001082_RS0123765;partial=true;product=lysozyme inhibitor LprI family protein;protein_id=WP_031612980.1;start_range=.,1;transl_table=11
NZ_APAH01000326.1	RefSeq	gene	381	965	.	-	.	ID=gene-CFSAN001082_RS47315;Name=CFSAN001082_RS47315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47315;old_locus_tag=CFSAN001082_16430
NZ_APAH01000326.1	Protein Homology	CDS	381	965	.	-	0	ID=cds-WP_023254606.1;Parent=gene-CFSAN001082_RS47315;Dbxref=GenBank:WP_023254606.1;Name=WP_023254606.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001556320.1;locus_tag=CFSAN001082_RS47315;product=hypothetical protein;protein_id=WP_023254606.1;transl_table=11
NZ_APAH01000326.1	RefSeq	gene	1200	1577	.	+	.	ID=gene-CFSAN001082_RS40050;Name=CFSAN001082_RS40050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40050;old_locus_tag=CFSAN001082_16435
NZ_APAH01000326.1	Protein Homology	CDS	1200	1577	.	+	0	ID=cds-WP_000068011.1;Parent=gene-CFSAN001082_RS40050;Dbxref=GenBank:WP_000068011.1;Name=WP_000068011.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000068011.1;locus_tag=CFSAN001082_RS40050;product=helix-turn-helix domain-containing protein;protein_id=WP_000068011.1;transl_table=11
##sequence-region NZ_APAH01000327.1 1 261
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000327.1	RefSeq	region	1	261	.	+	.	ID=NZ_APAH01000327.1:1..261;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000327.1	RefSeq	pseudogene	1	81	.	+	.	ID=gene-CFSAN001082_RS40055;Name=CFSAN001082_RS40055;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS40055;old_locus_tag=CFSAN001082_16440;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000327.1	Protein Homology	CDS	1	81	.	+	0	ID=cds-CFSAN001082_RS40055;Parent=gene-CFSAN001082_RS40055;Note=SigE%3B IpgE%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460063.1;locus_tag=CFSAN001082_RS40055;partial=true;product=type III secretion chaperone protein SigE;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000327.1	RefSeq	pseudogene	91	261	.	-	.	ID=gene-CFSAN001082_RS48970;Name=CFSAN001082_RS48970;end_range=261,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48970;old_locus_tag=CFSAN001082_16445;partial=true;pseudo=true
NZ_APAH01000327.1	Protein Homology	CDS	91	261	.	-	0	ID=cds-CFSAN001082_RS48970;Parent=gene-CFSAN001082_RS48970;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=261,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460062.1;locus_tag=CFSAN001082_RS48970;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000328.1 1 2010
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000328.1	RefSeq	region	1	2010	.	+	.	ID=NZ_APAH01000328.1:1..2010;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000328.1	RefSeq	gene	646	936	.	+	.	ID=gene-CFSAN001082_RS40065;Name=CFSAN001082_RS40065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40065;old_locus_tag=CFSAN001082_16450
NZ_APAH01000328.1	Protein Homology	CDS	646	936	.	+	0	ID=cds-WP_000855694.1;Parent=gene-CFSAN001082_RS40065;Dbxref=GenBank:WP_000855694.1;Name=WP_000855694.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461825.1;locus_tag=CFSAN001082_RS40065;product=DUF1778 domain-containing protein;protein_id=WP_000855694.1;transl_table=11
NZ_APAH01000328.1	RefSeq	gene	933	1460	.	+	.	ID=gene-CFSAN001082_RS40070;Name=CFSAN001082_RS40070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40070;old_locus_tag=CFSAN001082_16455
NZ_APAH01000328.1	Protein Homology	CDS	933	1460	.	+	0	ID=cds-WP_000971647.1;Parent=gene-CFSAN001082_RS40070;Dbxref=GenBank:WP_000971647.1;Name=WP_000971647.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461826.1;locus_tag=CFSAN001082_RS40070;product=GNAT family N-acetyltransferase;protein_id=WP_000971647.1;transl_table=11
NZ_APAH01000328.1	RefSeq	pseudogene	1533	1747	.	-	.	ID=gene-CFSAN001082_RS47980;Name=CFSAN001082_RS47980;end_range=1747,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47980;old_locus_tag=CFSAN001082_16460;partial=true;pseudo=true
NZ_APAH01000328.1	Protein Homology	CDS	1533	1747	.	-	0	ID=cds-CFSAN001082_RS47980;Parent=gene-CFSAN001082_RS47980;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1747,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011791210.1;locus_tag=CFSAN001082_RS47980;partial=true;product=IS5/IS1182 family transposase;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000329.1 1 334
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000329.1	RefSeq	region	1	334	.	+	.	ID=NZ_APAH01000329.1:1..334;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000329.1	RefSeq	pseudogene	1	191	.	+	.	ID=gene-CFSAN001082_RS40080;Name=CFSAN001082_RS40080;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS40080;old_locus_tag=CFSAN001082_16465;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000329.1	Protein Homology	CDS	1	191	.	+	2	ID=cds-CFSAN001082_RS40080;Parent=gene-CFSAN001082_RS40080;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459340.1;locus_tag=CFSAN001082_RS40080;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000330.1 1 549
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000330.1	RefSeq	region	1	549	.	+	.	ID=NZ_APAH01000330.1:1..549;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000330.1	RefSeq	gene	118	225	.	-	.	ID=gene-CFSAN001082_RS49085;Name=CFSAN001082_RS49085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49085
NZ_APAH01000330.1	Protein Homology	CDS	118	225	.	-	0	ID=cds-WP_071787107.1;Parent=gene-CFSAN001082_RS49085;Dbxref=GenBank:WP_071787107.1;Name=WP_071787107.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023120.6;locus_tag=CFSAN001082_RS49085;product=DUF3289 family protein;protein_id=WP_071787107.1;transl_table=11
##sequence-region NZ_APAH01000331.1 1 340
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000331.1	RefSeq	region	1	340	.	+	.	ID=NZ_APAH01000331.1:1..340;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000331.1	RefSeq	gene	1	200	.	-	.	ID=gene-CFSAN001082_RS40085;Name=CFSAN001082_RS40085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40085;old_locus_tag=CFSAN001082_16475;partial=true;start_range=.,1
NZ_APAH01000331.1	Protein Homology	CDS	1	200	.	-	0	ID=cds-WP_023252565.1;Parent=gene-CFSAN001082_RS40085;Dbxref=GenBank:WP_023252565.1;Name=WP_023252565.1;Ontology_term=GO:0034220,GO:0015288,GO:0009279,GO:0016020;gbkey=CDS;go_component=cell outer membrane|0009279||IEA,membrane|0016020||IEA;go_function=porin activity|0015288||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460531.1;locus_tag=CFSAN001082_RS40085;partial=true;product=porin;protein_id=WP_023252565.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000332.1 1 5704
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000332.1	RefSeq	region	1	5704	.	+	.	ID=NZ_APAH01000332.1:1..5704;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000332.1	RefSeq	gene	295	2094	.	+	.	ID=gene-CFSAN001082_RS40090;Name=cysJ;gbkey=Gene;gene=cysJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40090;old_locus_tag=CFSAN001082_16480
NZ_APAH01000332.1	Protein Homology	CDS	295	2094	.	+	0	ID=cds-WP_023207164.1;Parent=gene-CFSAN001082_RS40090;Dbxref=GenBank:WP_023207164.1;Name=WP_023207164.1;Ontology_term=GO:0000103,GO:0019344,GO:0004783,GO:0010181,GO:0050660;gbkey=CDS;gene=cysJ;go_function=sulfite reductase (NADPH) activity|0004783||IEA,FMN binding|0010181||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=sulfate assimilation|0000103||IEA,cysteine biosynthetic process|0019344||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461869.1;locus_tag=CFSAN001082_RS40090;product=NADPH-dependent assimilatory sulfite reductase flavoprotein subunit;protein_id=WP_023207164.1;transl_table=11
NZ_APAH01000332.1	RefSeq	gene	2094	3806	.	+	.	ID=gene-CFSAN001082_RS40095;Name=cysI;gbkey=Gene;gene=cysI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40095;old_locus_tag=CFSAN001082_16485
NZ_APAH01000332.1	Protein Homology	CDS	2094	3806	.	+	0	ID=cds-WP_023254610.1;Parent=gene-CFSAN001082_RS40095;Dbxref=GenBank:WP_023254610.1;Name=WP_023254610.1;Ontology_term=GO:0000103,GO:0008652,GO:0004783,GO:0050661,GO:0051539,GO:0009337;gbkey=CDS;gene=cysI;go_component=sulfite reductase complex (NADPH)|0009337||IEA;go_function=sulfite reductase (NADPH) activity|0004783||IEA,NADP binding|0050661||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=sulfate assimilation|0000103||IEA,amino acid biosynthetic process|0008652||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001290736.1;locus_tag=CFSAN001082_RS40095;product=assimilatory sulfite reductase (NADPH) hemoprotein subunit;protein_id=WP_023254610.1;transl_table=11
NZ_APAH01000332.1	RefSeq	gene	3882	4616	.	+	.	ID=gene-CFSAN001082_RS40100;Name=cysH;gbkey=Gene;gene=cysH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40100;old_locus_tag=CFSAN001082_16490
NZ_APAH01000332.1	Protein Homology	CDS	3882	4616	.	+	0	ID=cds-WP_023254611.1;Parent=gene-CFSAN001082_RS40100;Dbxref=GenBank:WP_023254611.1;Name=WP_023254611.1;Ontology_term=GO:0019379,GO:0004604;gbkey=CDS;gene=cysH;go_function=phosphoadenylyl-sulfate reductase (thioredoxin) activity|0004604||IEA;go_process=sulfate assimilation%2C phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)|0019379||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461867.1;locus_tag=CFSAN001082_RS40100;product=phosphoadenosine phosphosulfate reductase;protein_id=WP_023254611.1;transl_table=11
NZ_APAH01000332.1	RefSeq	gene	4829	5704	.	-	.	ID=gene-CFSAN001082_RS40105;Name=sopD;end_range=5704,.;gbkey=Gene;gene=sopD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40105;old_locus_tag=CFSAN001082_16495;partial=true
NZ_APAH01000332.1	Protein Homology	CDS	4829	5704	.	-	0	ID=cds-WP_023254612.1;Parent=gene-CFSAN001082_RS40105;Dbxref=GenBank:WP_023254612.1;Name=WP_023254612.1;end_range=5704,.;gbkey=CDS;gene=sopD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441126.1;locus_tag=CFSAN001082_RS40105;partial=true;product=SPI-1 type III secretion system effector SopD;protein_id=WP_023254612.1;transl_table=11
##sequence-region NZ_APAH01000333.1 1 245
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000333.1	RefSeq	region	1	245	.	+	.	ID=NZ_APAH01000333.1:1..245;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000333.1	RefSeq	pseudogene	1	245	.	+	.	ID=gene-CFSAN001082_RS48630;Name=CFSAN001082_RS48630;end_range=245,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48630;old_locus_tag=CFSAN001082_16500;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000333.1	Protein Homology	CDS	1	245	.	+	2	ID=cds-CFSAN001082_RS48630;Parent=gene-CFSAN001082_RS48630;Note=similar to ElaD%3B specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins%3B SseL in Salmonella is required for macrophage killing and virulence%2C and it is secreted by the salmonella pathogenicity island 2 type III secretion system%3B incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=245,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001017721.1;locus_tag=CFSAN001082_RS48630;partial=true;product=type III secretion system effector deubiquitinase SseL;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000334.1 1 12736
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000334.1	RefSeq	region	1	12736	.	+	.	ID=NZ_APAH01000334.1:1..12736;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000334.1	RefSeq	gene	168	560	.	+	.	ID=gene-CFSAN001082_RS40115;Name=CFSAN001082_RS40115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40115;old_locus_tag=CFSAN001082_16505
NZ_APAH01000334.1	Protein Homology	CDS	168	560	.	+	0	ID=cds-WP_000776350.1;Parent=gene-CFSAN001082_RS40115;Dbxref=GenBank:WP_000776350.1;Name=WP_000776350.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460475.1;locus_tag=CFSAN001082_RS40115;product=YdeI family stress tolerance OB fold protein;protein_id=WP_000776350.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	907	1002	.	-	.	ID=gene-CFSAN001082_RS48355;Name=mgtS;gbkey=Gene;gene=mgtS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48355;old_locus_tag=CFSAN001082_16510
NZ_APAH01000334.1	Protein Homology	CDS	907	1002	.	-	0	ID=cds-WP_000901531.1;Parent=gene-CFSAN001082_RS48355;Dbxref=GenBank:WP_000901531.1;Name=WP_000901531.1;gbkey=CDS;gene=mgtS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165319.1;locus_tag=CFSAN001082_RS48355;product=protein MgtS;protein_id=WP_000901531.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	1251	2438	.	-	.	ID=gene-CFSAN001082_RS40125;Name=ydeE;gbkey=Gene;gene=ydeE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40125;old_locus_tag=CFSAN001082_16515
NZ_APAH01000334.1	Protein Homology	CDS	1251	2438	.	-	0	ID=cds-WP_001068056.1;Parent=gene-CFSAN001082_RS40125;Dbxref=GenBank:WP_001068056.1;Name=WP_001068056.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=ydeE;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460476.1;locus_tag=CFSAN001082_RS40125;product=efflux MFS transporter YdeE;protein_id=WP_001068056.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	2666	3568	.	+	.	ID=gene-CFSAN001082_RS40130;Name=eamA;gbkey=Gene;gene=eamA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40130;old_locus_tag=CFSAN001082_16520
NZ_APAH01000334.1	Protein Homology	CDS	2666	3568	.	+	0	ID=cds-WP_074182548.1;Parent=gene-CFSAN001082_RS40130;Dbxref=GenBank:WP_074182548.1;Name=WP_074182548.1;Ontology_term=GO:0016020;gbkey=CDS;gene=eamA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460477.1;locus_tag=CFSAN001082_RS40130;product=O-acetylserine/cysteine exporter;protein_id=WP_074182548.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	3687	3902	.	-	.	ID=gene-CFSAN001082_RS40135;Name=marB;gbkey=Gene;gene=marB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40135;old_locus_tag=CFSAN001082_16525
NZ_APAH01000334.1	Protein Homology	CDS	3687	3902	.	-	0	ID=cds-WP_023254615.1;Parent=gene-CFSAN001082_RS40135;Dbxref=GenBank:WP_023254615.1;Name=WP_023254615.1;gbkey=CDS;gene=marB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460478.1;locus_tag=CFSAN001082_RS40135;product=multiple antibiotic resistance protein MarB;protein_id=WP_023254615.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	3931	4314	.	-	.	ID=gene-CFSAN001082_RS40140;Name=marA;gbkey=Gene;gene=marA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40140;old_locus_tag=CFSAN001082_16530
NZ_APAH01000334.1	Protein Homology	CDS	3931	4314	.	-	0	ID=cds-WP_000091194.1;Parent=gene-CFSAN001082_RS40140;Dbxref=GenBank:WP_000091194.1;Name=WP_000091194.1;gbkey=CDS;gene=marA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000091194.1;locus_tag=CFSAN001082_RS40140;product=MDR efflux pump AcrAB transcriptional activator MarA;protein_id=WP_000091194.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	4334	4768	.	-	.	ID=gene-CFSAN001082_RS40145;Name=marR;gbkey=Gene;gene=marR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40145;old_locus_tag=CFSAN001082_16535
NZ_APAH01000334.1	Protein Homology	CDS	4334	4768	.	-	0	ID=cds-WP_000843434.1;Parent=gene-CFSAN001082_RS40145;Dbxref=GenBank:WP_000843434.1;Name=WP_000843434.1;gbkey=CDS;gene=marR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460480.1;locus_tag=CFSAN001082_RS40145;product=multiple antibiotic resistance transcriptional regulator MarR;protein_id=WP_000843434.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	5027	5692	.	+	.	ID=gene-CFSAN001082_RS40150;Name=CFSAN001082_RS40150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40150;old_locus_tag=CFSAN001082_16540
NZ_APAH01000334.1	Protein Homology	CDS	5027	5692	.	+	0	ID=cds-WP_000968968.1;Parent=gene-CFSAN001082_RS40150;Dbxref=GenBank:WP_000968968.1;Name=WP_000968968.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460481.1;locus_tag=CFSAN001082_RS40150;product=MarC family NAAT transporter;protein_id=WP_000968968.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	5740	6930	.	-	.	ID=gene-CFSAN001082_RS40155;Name=CFSAN001082_RS40155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40155;old_locus_tag=CFSAN001082_16545
NZ_APAH01000334.1	Protein Homology	CDS	5740	6930	.	-	0	ID=cds-WP_000154617.1;Parent=gene-CFSAN001082_RS40155;Dbxref=GenBank:WP_000154617.1;Name=WP_000154617.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460482.1;locus_tag=CFSAN001082_RS40155;product=sugar transporter;protein_id=WP_000154617.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	7046	7918	.	-	.	ID=gene-CFSAN001082_RS40160;Name=ptrR;gbkey=Gene;gene=ptrR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40160;old_locus_tag=CFSAN001082_16550
NZ_APAH01000334.1	Protein Homology	CDS	7046	7918	.	-	0	ID=cds-WP_023254616.1;Parent=gene-CFSAN001082_RS40160;Dbxref=GenBank:WP_023254616.1;Name=WP_023254616.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ptrR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460483.1;locus_tag=CFSAN001082_RS40160;product=putrescine utilization regulator PtrR;protein_id=WP_023254616.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	8021	9409	.	+	.	ID=gene-CFSAN001082_RS40165;Name=sad;gbkey=Gene;gene=sad;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40165;old_locus_tag=CFSAN001082_16555
NZ_APAH01000334.1	Protein Homology	CDS	8021	9409	.	+	0	ID=cds-WP_020898754.1;Parent=gene-CFSAN001082_RS40165;Dbxref=GenBank:WP_020898754.1;Name=WP_020898754.1;Ontology_term=GO:0004030;gbkey=CDS;gene=sad;go_function=aldehyde dehydrogenase [NAD(P)+] activity|0004030||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460484.1;locus_tag=CFSAN001082_RS40165;product=succinate-semialdehyde dehydrogenase;protein_id=WP_020898754.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	9482	10408	.	+	.	ID=gene-CFSAN001082_RS40170;Name=glsB;gbkey=Gene;gene=glsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40170;old_locus_tag=CFSAN001082_16560
NZ_APAH01000334.1	Protein Homology	CDS	9482	10408	.	+	0	ID=cds-WP_000090081.1;Parent=gene-CFSAN001082_RS40170;Dbxref=GenBank:WP_000090081.1;Name=WP_000090081.1;Ontology_term=GO:0006541,GO:0004359;gbkey=CDS;gene=glsB;go_function=glutaminase activity|0004359||IEA;go_process=glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460485.1;locus_tag=CFSAN001082_RS40170;product=glutaminase B;protein_id=WP_000090081.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	10408	10767	.	+	.	ID=gene-CFSAN001082_RS40175;Name=CFSAN001082_RS40175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40175;old_locus_tag=CFSAN001082_16565
NZ_APAH01000334.1	Protein Homology	CDS	10408	10767	.	+	0	ID=cds-WP_000992449.1;Parent=gene-CFSAN001082_RS40175;Dbxref=GenBank:WP_000992449.1;Name=WP_000992449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460486.1;locus_tag=CFSAN001082_RS40175;product=DUF4186 domain-containing protein;protein_id=WP_000992449.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	11024	11938	.	+	.	ID=gene-CFSAN001082_RS40180;Name=CFSAN001082_RS40180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40180;old_locus_tag=CFSAN001082_16570
NZ_APAH01000334.1	Protein Homology	CDS	11024	11938	.	+	0	ID=cds-WP_023254617.1;Parent=gene-CFSAN001082_RS40180;Dbxref=GenBank:WP_023254617.1;Name=WP_023254617.1;Ontology_term=GO:0005254;gbkey=CDS;go_function=chloride channel activity|0005254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416037.2;locus_tag=CFSAN001082_RS40180;product=bestrophin family protein;protein_id=WP_023254617.1;transl_table=11
NZ_APAH01000334.1	RefSeq	gene	11994	12536	.	-	.	ID=gene-CFSAN001082_RS40185;Name=CFSAN001082_RS40185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40185;old_locus_tag=CFSAN001082_16575
NZ_APAH01000334.1	Protein Homology	CDS	11994	12536	.	-	0	ID=cds-WP_023254618.1;Parent=gene-CFSAN001082_RS40185;Dbxref=GenBank:WP_023254618.1;Name=WP_023254618.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460488.1;locus_tag=CFSAN001082_RS40185;product=YybH family protein;protein_id=WP_023254618.1;transl_table=11
##sequence-region NZ_APAH01000335.1 1 9957
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000335.1	RefSeq	region	1	9957	.	+	.	ID=NZ_APAH01000335.1:1..9957;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000335.1	RefSeq	gene	1	783	.	+	.	ID=gene-CFSAN001082_RS40190;Name=CFSAN001082_RS40190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40190;old_locus_tag=CFSAN001082_16580;partial=true;start_range=.,1
NZ_APAH01000335.1	Protein Homology	CDS	1	783	.	+	0	ID=cds-WP_031612992.1;Parent=gene-CFSAN001082_RS40190;Dbxref=GenBank:WP_031612992.1;Name=WP_031612992.1;Ontology_term=GO:0006814,GO:0016829;gbkey=CDS;go_function=lyase activity|0016829||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459059.1;locus_tag=CFSAN001082_RS40190;partial=true;product=sodium ion-translocating decarboxylase subunit beta;protein_id=WP_031612992.1;start_range=.,1;transl_table=11
NZ_APAH01000335.1	RefSeq	gene	902	1600	.	+	.	ID=gene-CFSAN001082_RS40195;Name=CFSAN001082_RS40195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40195;old_locus_tag=CFSAN001082_16585
NZ_APAH01000335.1	Protein Homology	CDS	902	1600	.	+	0	ID=cds-WP_017441912.1;Parent=gene-CFSAN001082_RS40195;Dbxref=GenBank:WP_017441912.1;Name=WP_017441912.1;Ontology_term=GO:0016310,GO:0005524,GO:0046917;gbkey=CDS;go_function=ATP binding|0005524||IEA,triphosphoribosyl-dephospho-CoA synthase activity|0046917||IEA;go_process=phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459748.1;locus_tag=CFSAN001082_RS40195;product=triphosphoribosyl-dephospho-CoA synthase;protein_id=WP_017441912.1;transl_table=11
NZ_APAH01000335.1	RefSeq	gene	1981	3060	.	+	.	ID=gene-CFSAN001082_RS40200;Name=CFSAN001082_RS40200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40200;old_locus_tag=CFSAN001082_16590
NZ_APAH01000335.1	Protein Homology	CDS	1981	3060	.	+	0	ID=cds-WP_000128327.1;Parent=gene-CFSAN001082_RS40200;Dbxref=GenBank:WP_000128327.1;Name=WP_000128327.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459749.1;locus_tag=CFSAN001082_RS40200;product=FecCD family ABC transporter permease;protein_id=WP_000128327.1;transl_table=11
NZ_APAH01000335.1	RefSeq	gene	3060	3836	.	+	.	ID=gene-CFSAN001082_RS40205;Name=CFSAN001082_RS40205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40205;old_locus_tag=CFSAN001082_16595
NZ_APAH01000335.1	Protein Homology	CDS	3060	3836	.	+	0	ID=cds-WP_001214709.1;Parent=gene-CFSAN001082_RS40205;Dbxref=GenBank:WP_001214709.1;Name=WP_001214709.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459750.1;locus_tag=CFSAN001082_RS40205;product=ABC transporter ATP-binding protein;protein_id=WP_001214709.1;transl_table=11
NZ_APAH01000335.1	RefSeq	gene	3927	4679	.	-	.	ID=gene-CFSAN001082_RS40210;Name=gpmA;gbkey=Gene;gene=gpmA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40210;old_locus_tag=CFSAN001082_16600
NZ_APAH01000335.1	Protein Homology	CDS	3927	4679	.	-	0	ID=cds-WP_000301556.1;Parent=gene-CFSAN001082_RS40210;Dbxref=GenBank:WP_000301556.1;Name=WP_000301556.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmA;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000301556.1;locus_tag=CFSAN001082_RS40210;product=2%2C3-diphosphoglycerate-dependent phosphoglycerate mutase;protein_id=WP_000301556.1;transl_table=11
NZ_APAH01000335.1	RefSeq	gene	4903	5943	.	-	.	ID=gene-CFSAN001082_RS40215;Name=galM;gbkey=Gene;gene=galM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40215;old_locus_tag=CFSAN001082_16605
NZ_APAH01000335.1	Protein Homology	CDS	4903	5943	.	-	0	ID=cds-WP_000931428.1;Parent=gene-CFSAN001082_RS40215;Dbxref=GenBank:WP_000931428.1;Name=WP_000931428.1;Ontology_term=GO:0006012,GO:0004034;gbkey=CDS;gene=galM;go_function=aldose 1-epimerase activity|0004034||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459752.1;locus_tag=CFSAN001082_RS40215;product=galactose-1-epimerase;protein_id=WP_000931428.1;transl_table=11
NZ_APAH01000335.1	RefSeq	gene	5937	7085	.	-	.	ID=gene-CFSAN001082_RS40220;Name=galK;gbkey=Gene;gene=galK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40220;old_locus_tag=CFSAN001082_16610
NZ_APAH01000335.1	Protein Homology	CDS	5937	7085	.	-	0	ID=cds-WP_023193990.1;Parent=gene-CFSAN001082_RS40220;Dbxref=GenBank:WP_023193990.1;Name=WP_023193990.1;Ontology_term=GO:0006012,GO:0046835,GO:0004335,GO:0005524;gbkey=CDS;gene=galK;go_function=galactokinase activity|0004335||IEA,ATP binding|0005524||IEA;go_process=galactose metabolic process|0006012||IEA,carbohydrate phosphorylation|0046835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001713229.1;locus_tag=CFSAN001082_RS40220;product=galactokinase;protein_id=WP_023193990.1;transl_table=11
NZ_APAH01000335.1	RefSeq	gene	7088	8134	.	-	.	ID=gene-CFSAN001082_RS40225;Name=galT;gbkey=Gene;gene=galT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40225;old_locus_tag=CFSAN001082_16615
NZ_APAH01000335.1	Protein Homology	CDS	7088	8134	.	-	0	ID=cds-WP_000187473.1;Parent=gene-CFSAN001082_RS40225;Dbxref=GenBank:WP_000187473.1;Name=WP_000187473.1;Ontology_term=GO:0006012,GO:0008108,GO:0008270;gbkey=CDS;gene=galT;go_function=UDP-glucose:hexose-1-phosphate uridylyltransferase activity|0008108||IEA,zinc ion binding|0008270||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459754.1;locus_tag=CFSAN001082_RS40225;product=galactose-1-phosphate uridylyltransferase;protein_id=WP_000187473.1;transl_table=11
NZ_APAH01000335.1	RefSeq	gene	8145	9161	.	-	.	ID=gene-CFSAN001082_RS40230;Name=galE;gbkey=Gene;gene=galE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40230;old_locus_tag=CFSAN001082_16620
NZ_APAH01000335.1	Protein Homology	CDS	8145	9161	.	-	0	ID=cds-WP_001265465.1;Parent=gene-CFSAN001082_RS40230;Dbxref=GenBank:WP_001265465.1;Name=WP_001265465.1;Ontology_term=GO:0006012,GO:0003978;gbkey=CDS;gene=galE;go_function=UDP-glucose 4-epimerase activity|0003978||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459755.1;locus_tag=CFSAN001082_RS40230;product=UDP-glucose 4-epimerase GalE;protein_id=WP_001265465.1;transl_table=11
NZ_APAH01000335.1	RefSeq	gene	9384	9957	.	-	.	ID=gene-CFSAN001082_RS40235;Name=CFSAN001082_RS40235;end_range=9957,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40235;old_locus_tag=CFSAN001082_16625;partial=true
NZ_APAH01000335.1	Protein Homology	CDS	9384	9957	.	-	1	ID=cds-WP_023249920.1;Parent=gene-CFSAN001082_RS40235;Dbxref=GenBank:WP_023249920.1;Name=WP_023249920.1;end_range=9957,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459756.1;locus_tag=CFSAN001082_RS40235;partial=true;product=DUF2167 domain-containing protein;protein_id=WP_023249920.1;transl_table=11
##sequence-region NZ_APAH01000336.1 1 4159
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000336.1	RefSeq	region	1	4159	.	+	.	ID=NZ_APAH01000336.1:1..4159;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000336.1	RefSeq	gene	232	1881	.	-	.	ID=gene-CFSAN001082_RS40240;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40240;old_locus_tag=CFSAN001082_16630
NZ_APAH01000336.1	Protein Homology	CDS	232	1881	.	-	0	ID=cds-WP_023254620.1;Parent=gene-CFSAN001082_RS40240;Dbxref=GenBank:WP_023254620.1;Name=WP_023254620.1;Ontology_term=GO:0006094,GO:0006096,GO:0004347;gbkey=CDS;gene=pgi;go_function=glucose-6-phosphate isomerase activity|0004347||IEA;go_process=gluconeogenesis|0006094||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463086.1;locus_tag=CFSAN001082_RS40240;product=glucose-6-phosphate isomerase;protein_id=WP_023254620.1;transl_table=11
NZ_APAH01000336.1	RefSeq	gene	2226	3575	.	+	.	ID=gene-CFSAN001082_RS40245;Name=lysC;gbkey=Gene;gene=lysC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40245;old_locus_tag=CFSAN001082_16635
NZ_APAH01000336.1	Protein Homology	CDS	2226	3575	.	+	0	ID=cds-WP_000136394.1;Parent=gene-CFSAN001082_RS40245;Dbxref=GenBank:WP_000136394.1;Name=WP_000136394.1;Ontology_term=GO:0009089,GO:0004072;gbkey=CDS;gene=lysC;go_function=aspartate kinase activity|0004072||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463085.1;locus_tag=CFSAN001082_RS40245;product=lysine-sensitive aspartokinase 3;protein_id=WP_000136394.1;transl_table=11
NZ_APAH01000336.1	RefSeq	gene	3706	4053	.	-	.	ID=gene-CFSAN001082_RS40250;Name=CFSAN001082_RS40250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40250;old_locus_tag=CFSAN001082_16640
NZ_APAH01000336.1	Protein Homology	CDS	3706	4053	.	-	0	ID=cds-WP_000615248.1;Parent=gene-CFSAN001082_RS40250;Dbxref=GenBank:WP_000615248.1;Name=WP_000615248.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000615246.1;locus_tag=CFSAN001082_RS40250;product=Mor transcription activator family protein;protein_id=WP_000615248.1;transl_table=11
##sequence-region NZ_APAH01000337.1 1 22642
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000337.1	RefSeq	region	1	22642	.	+	.	ID=NZ_APAH01000337.1:1..22642;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000337.1	RefSeq	gene	52	1728	.	+	.	ID=gene-CFSAN001082_RS40255;Name=ybaL;gbkey=Gene;gene=ybaL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40255;old_locus_tag=CFSAN001082_16645
NZ_APAH01000337.1	Protein Homology	CDS	52	1728	.	+	0	ID=cds-WP_000546202.1;Parent=gene-CFSAN001082_RS40255;Dbxref=GenBank:WP_000546202.1;Name=WP_000546202.1;Ontology_term=GO:0006813,GO:0008324,GO:0051139,GO:0016020;gbkey=CDS;gene=ybaL;go_component=membrane|0016020||IEA;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA,metal cation:proton antiporter activity|0051139||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459487.1;locus_tag=CFSAN001082_RS40255;product=YbaL family putative K(+) efflux transporter;protein_id=WP_000546202.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	1777	3081	.	-	.	ID=gene-CFSAN001082_RS40260;Name=gsk;gbkey=Gene;gene=gsk;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40260;old_locus_tag=CFSAN001082_16650
NZ_APAH01000337.1	Protein Homology	CDS	1777	3081	.	-	0	ID=cds-WP_000671593.1;Parent=gene-CFSAN001082_RS40260;Dbxref=GenBank:WP_000671593.1;Name=WP_000671593.1;gbkey=CDS;gene=gsk;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459486.1;locus_tag=CFSAN001082_RS40260;product=inosine/guanosine kinase;protein_id=WP_000671593.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	3234	4205	.	+	.	ID=gene-CFSAN001082_RS40265;Name=aes;gbkey=Gene;gene=aes;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40265;old_locus_tag=CFSAN001082_16655
NZ_APAH01000337.1	Protein Homology	CDS	3234	4205	.	+	0	ID=cds-WP_000801786.1;Parent=gene-CFSAN001082_RS40265;Dbxref=GenBank:WP_000801786.1;Name=WP_000801786.1;Ontology_term=GO:0016787;gbkey=CDS;gene=aes;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459485.1;locus_tag=CFSAN001082_RS40265;product=acetyl esterase;protein_id=WP_000801786.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	4202	5164	.	-	.	ID=gene-CFSAN001082_RS40270;Name=hemH;gbkey=Gene;gene=hemH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40270;old_locus_tag=CFSAN001082_16660
NZ_APAH01000337.1	Protein Homology	CDS	4202	5164	.	-	0	ID=cds-WP_023254621.1;Parent=gene-CFSAN001082_RS40270;Dbxref=GenBank:WP_023254621.1;Name=WP_023254621.1;Ontology_term=GO:0006779,GO:0004325;gbkey=CDS;gene=hemH;go_function=ferrochelatase activity|0004325||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459484.1;locus_tag=CFSAN001082_RS40270;product=ferrochelatase;protein_id=WP_023254621.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	5393	6037	.	-	.	ID=gene-CFSAN001082_RS40275;Name=adk;gbkey=Gene;gene=adk;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40275;old_locus_tag=CFSAN001082_16665
NZ_APAH01000337.1	Protein Homology	CDS	5393	6037	.	-	0	ID=cds-WP_001220237.1;Parent=gene-CFSAN001082_RS40275;Dbxref=GenBank:WP_001220237.1;Name=WP_001220237.1;Ontology_term=GO:0006139,GO:0004017,GO:0005524;gbkey=CDS;gene=adk;go_function=adenylate kinase activity|0004017||IEA,ATP binding|0005524||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007706188.1;locus_tag=CFSAN001082_RS40275;product=adenylate kinase;protein_id=WP_001220237.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	6279	8153	.	-	.	ID=gene-CFSAN001082_RS40280;Name=htpG;gbkey=Gene;gene=htpG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40280;old_locus_tag=CFSAN001082_16675
NZ_APAH01000337.1	Protein Homology	CDS	6279	8153	.	-	0	ID=cds-WP_001523272.1;Parent=gene-CFSAN001082_RS40280;Dbxref=GenBank:WP_001523272.1;Name=WP_001523272.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887,GO:0051082;gbkey=CDS;gene=htpG;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003903109.1;locus_tag=CFSAN001082_RS40280;product=molecular chaperone HtpG;protein_id=WP_001523272.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	8264	8869	.	-	.	ID=gene-CFSAN001082_RS40285;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40285;old_locus_tag=CFSAN001082_16680
NZ_APAH01000337.1	Protein Homology	CDS	8264	8869	.	-	0	ID=cds-WP_001195023.1;Parent=gene-CFSAN001082_RS40285;Dbxref=GenBank:WP_001195023.1;Name=WP_001195023.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0046872;gbkey=CDS;gene=recR;go_function=DNA binding|0003677||IEA,metal ion binding|0046872||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459481.1;locus_tag=CFSAN001082_RS40285;product=recombination mediator RecR;protein_id=WP_001195023.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	8869	9198	.	-	.	ID=gene-CFSAN001082_RS40290;Name=CFSAN001082_RS40290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40290;old_locus_tag=CFSAN001082_16685
NZ_APAH01000337.1	Protein Homology	CDS	8869	9198	.	-	0	ID=cds-WP_000467098.1;Parent=gene-CFSAN001082_RS40290;Dbxref=GenBank:WP_000467098.1;Name=WP_000467098.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001364632.1;locus_tag=CFSAN001082_RS40290;product=YbaB/EbfC family nucleoid-associated protein;protein_id=WP_000467098.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	9244	11172	.	-	.	ID=gene-CFSAN001082_RS40295;Name=dnaX;gbkey=Gene;gene=dnaX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40295;old_locus_tag=CFSAN001082_16690
NZ_APAH01000337.1	Protein Homology	CDS	9244	11172	.	-	0	ID=cds-WP_023254622.1;Parent=gene-CFSAN001082_RS40295;Dbxref=GenBank:WP_023254622.1;Name=WP_023254622.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0005524,GO:0009360;gbkey=CDS;gene=dnaX;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459479.1;locus_tag=CFSAN001082_RS40295;product=DNA polymerase III subunit gamma/tau;protein_id=WP_023254622.1;transl_table=11
NZ_APAH01000337.1	cmsearch	sequence_feature	9847	9911	.	-	.	ID=id-CFSAN001082_RS40295;Dbxref=RFAM:RF00382;Note=DnaX frameshifting element;gbkey=misc_feature;gene=dnaX;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS40295
NZ_APAH01000337.1	RefSeq	gene	11286	11837	.	-	.	ID=gene-CFSAN001082_RS40300;Name=apt;gbkey=Gene;gene=apt;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40300;old_locus_tag=CFSAN001082_16695
NZ_APAH01000337.1	Protein Homology	CDS	11286	11837	.	-	0	ID=cds-WP_000127350.1;Parent=gene-CFSAN001082_RS40300;Dbxref=GenBank:WP_000127350.1;Name=WP_000127350.1;Ontology_term=GO:0006168,GO:0003999;gbkey=CDS;gene=apt;go_function=adenine phosphoribosyltransferase activity|0003999||IEA;go_process=adenine salvage|0006168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125198.1;locus_tag=CFSAN001082_RS40300;product=adenine phosphoribosyltransferase;protein_id=WP_000127350.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	11990	12367	.	-	.	ID=gene-CFSAN001082_RS40305;Name=CFSAN001082_RS40305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40305;old_locus_tag=CFSAN001082_16700
NZ_APAH01000337.1	Protein Homology	CDS	11990	12367	.	-	0	ID=cds-WP_001189860.1;Parent=gene-CFSAN001082_RS40305;Dbxref=GenBank:WP_001189860.1;Name=WP_001189860.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459477.1;locus_tag=CFSAN001082_RS40305;product=DUF454 family protein;protein_id=WP_001189860.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	12436	12963	.	+	.	ID=gene-CFSAN001082_RS40310;Name=priC;gbkey=Gene;gene=priC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40310;old_locus_tag=CFSAN001082_16705
NZ_APAH01000337.1	Protein Homology	CDS	12436	12963	.	+	0	ID=cds-WP_001519637.1;Parent=gene-CFSAN001082_RS40310;Dbxref=GenBank:WP_001519637.1;Name=WP_001519637.1;gbkey=CDS;gene=priC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001454692.1;locus_tag=CFSAN001082_RS40310;product=primosomal replication protein N'';protein_id=WP_001519637.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	12977	13144	.	+	.	ID=gene-CFSAN001082_RS40315;Name=rsmS;gbkey=Gene;gene=rsmS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40315;old_locus_tag=CFSAN001082_16710
NZ_APAH01000337.1	Protein Homology	CDS	12977	13144	.	+	0	ID=cds-WP_000051161.1;Parent=gene-CFSAN001082_RS40315;Dbxref=GenBank:WP_000051161.1;Name=WP_000051161.1;gbkey=CDS;gene=rsmS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459475.1;locus_tag=CFSAN001082_RS40315;product=pleiotropic regulatory protein RsmS;protein_id=WP_000051161.1;transl_table=11
NZ_APAH01000337.1	RefSeq	pseudogene	13236	13883	.	+	.	ID=gene-CFSAN001082_RS40320;Name=CFSAN001082_RS40320;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS40320;old_locus_tag=CFSAN001082_16715;partial=true;pseudo=true;start_range=.,13236
NZ_APAH01000337.1	Protein Homology	CDS	13236	13883	.	+	0	ID=cds-CFSAN001082_RS40320;Parent=gene-CFSAN001082_RS40320;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459474.1;locus_tag=CFSAN001082_RS40320;partial=true;product=Rpn family recombination-promoting nuclease/putative transposase;pseudo=true;start_range=.,13236;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	13925	17287	.	-	.	ID=gene-CFSAN001082_RS40325;Name=mscK;gbkey=Gene;gene=mscK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40325;old_locus_tag=CFSAN001082_16720
NZ_APAH01000337.1	Protein Homology	CDS	13925	17287	.	-	0	ID=cds-WP_023216294.1;Parent=gene-CFSAN001082_RS40325;Dbxref=GenBank:WP_023216294.1;Name=WP_023216294.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=mscK;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459473.1;locus_tag=CFSAN001082_RS40325;product=mechanosensitive channel MscK;protein_id=WP_023216294.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	17406	18059	.	-	.	ID=gene-CFSAN001082_RS40330;Name=acrR;gbkey=Gene;gene=acrR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40330;old_locus_tag=CFSAN001082_16725
NZ_APAH01000337.1	Protein Homology	CDS	17406	18059	.	-	0	ID=cds-WP_000101755.1;Parent=gene-CFSAN001082_RS40330;Dbxref=GenBank:WP_000101755.1;Name=WP_000101755.1;gbkey=CDS;gene=acrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459472.1;locus_tag=CFSAN001082_RS40330;product=multidrug efflux transporter transcriptional repressor AcrR;protein_id=WP_000101755.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	18201	19394	.	+	.	ID=gene-CFSAN001082_RS40335;Name=acrA;gbkey=Gene;gene=acrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40335;old_locus_tag=CFSAN001082_16730
NZ_APAH01000337.1	Protein Homology	CDS	18201	19394	.	+	0	ID=cds-WP_001039199.1;Parent=gene-CFSAN001082_RS40335;Dbxref=GenBank:WP_001039199.1;Name=WP_001039199.1;gbkey=CDS;gene=acrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459471.1;locus_tag=CFSAN001082_RS40335;product=multidrug efflux RND transporter periplasmic adaptor subunit AcrA;protein_id=WP_001039199.1;transl_table=11
NZ_APAH01000337.1	RefSeq	gene	19417	22566	.	+	.	ID=gene-CFSAN001082_RS40340;Name=acrB;gbkey=Gene;gene=acrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40340;old_locus_tag=CFSAN001082_16735
NZ_APAH01000337.1	Protein Homology	CDS	19417	22566	.	+	0	ID=cds-WP_001132508.1;Parent=gene-CFSAN001082_RS40340;Dbxref=GenBank:WP_001132508.1;Name=WP_001132508.1;gbkey=CDS;gene=acrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459470.1;locus_tag=CFSAN001082_RS40340;product=efflux RND transporter permease AcrB;protein_id=WP_001132508.1;transl_table=11
##sequence-region NZ_APAH01000338.1 1 614
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000338.1	RefSeq	region	1	614	.	+	.	ID=NZ_APAH01000338.1:1..614;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000338.1	RefSeq	gene	1	614	.	-	.	ID=gene-CFSAN001082_RS40345;Name=galE;end_range=614,.;gbkey=Gene;gene=galE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40345;old_locus_tag=CFSAN001082_16740;partial=true;start_range=.,1
NZ_APAH01000338.1	Protein Homology	CDS	1	614	.	-	1	ID=cds-WP_023254624.1;Parent=gene-CFSAN001082_RS40345;Dbxref=GenBank:WP_023254624.1;Name=WP_023254624.1;Ontology_term=GO:0006012,GO:0003978;end_range=614,.;gbkey=CDS;gene=galE;go_function=UDP-glucose 4-epimerase activity|0003978||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000234386.1;locus_tag=CFSAN001082_RS40345;partial=true;product=UDP-glucose 4-epimerase GalE;protein_id=WP_023254624.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000339.1 1 32335
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000339.1	RefSeq	region	1	32335	.	+	.	ID=NZ_APAH01000339.1:1..32335;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000339.1	RefSeq	gene	179	766	.	+	.	ID=gene-CFSAN001082_RS40350;Name=CFSAN001082_RS40350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40350;old_locus_tag=CFSAN001082_16745
NZ_APAH01000339.1	Protein Homology	CDS	179	766	.	+	0	ID=cds-WP_023254625.1;Parent=gene-CFSAN001082_RS40350;Dbxref=GenBank:WP_023254625.1;Name=WP_023254625.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017466162.1;locus_tag=CFSAN001082_RS40350;product=fimbrial protein;protein_id=WP_023254625.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	849	3545	.	+	.	ID=gene-CFSAN001082_RS40355;Name=CFSAN001082_RS40355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40355;old_locus_tag=CFSAN001082_16750
NZ_APAH01000339.1	Protein Homology	CDS	849	3545	.	+	0	ID=cds-WP_071787108.1;Parent=gene-CFSAN001082_RS40355;Dbxref=GenBank:WP_071787108.1;Name=WP_071787108.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000981797.1;locus_tag=CFSAN001082_RS40355;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_071787108.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	3558	4331	.	+	.	ID=gene-CFSAN001082_RS40360;Name=CFSAN001082_RS40360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40360;old_locus_tag=CFSAN001082_16755
NZ_APAH01000339.1	Protein Homology	CDS	3558	4331	.	+	0	ID=cds-WP_023254627.1;Parent=gene-CFSAN001082_RS40360;Dbxref=GenBank:WP_023254627.1;Name=WP_023254627.1;Ontology_term=GO:0071555,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001044456.1;locus_tag=CFSAN001082_RS40360;product=fimbria/pilus periplasmic chaperone;protein_id=WP_023254627.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	4351	4857	.	+	.	ID=gene-CFSAN001082_RS40365;Name=CFSAN001082_RS40365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40365;old_locus_tag=CFSAN001082_16760
NZ_APAH01000339.1	Protein Homology	CDS	4351	4857	.	+	0	ID=cds-WP_023233916.1;Parent=gene-CFSAN001082_RS40365;Dbxref=GenBank:WP_023233916.1;Name=WP_023233916.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000178262.1;locus_tag=CFSAN001082_RS40365;product=fimbrial protein;protein_id=WP_023233916.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	4872	5342	.	+	.	ID=gene-CFSAN001082_RS40370;Name=CFSAN001082_RS40370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40370;old_locus_tag=CFSAN001082_16765
NZ_APAH01000339.1	Protein Homology	CDS	4872	5342	.	+	0	ID=cds-WP_000832396.1;Parent=gene-CFSAN001082_RS40370;Dbxref=GenBank:WP_000832396.1;Name=WP_000832396.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006667202.1;locus_tag=CFSAN001082_RS40370;product=fimbrial protein;protein_id=WP_000832396.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	5339	5875	.	+	.	ID=gene-CFSAN001082_RS40375;Name=CFSAN001082_RS40375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40375;old_locus_tag=CFSAN001082_16770
NZ_APAH01000339.1	Protein Homology	CDS	5339	5875	.	+	0	ID=cds-WP_023254628.1;Parent=gene-CFSAN001082_RS40375;Dbxref=GenBank:WP_023254628.1;Name=WP_023254628.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001079648.1;locus_tag=CFSAN001082_RS40375;product=fimbrial protein;protein_id=WP_023254628.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	5904	6989	.	+	.	ID=gene-CFSAN001082_RS0123780;Name=CFSAN001082_RS0123780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123780
NZ_APAH01000339.1	Protein Homology	CDS	5904	6989	.	+	0	ID=cds-WP_031613001.1;Parent=gene-CFSAN001082_RS0123780;Dbxref=GenBank:WP_031613001.1;Name=WP_031613001.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001188944.1;locus_tag=CFSAN001082_RS0123780;product=hypothetical protein;protein_id=WP_031613001.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	7001	8050	.	+	.	ID=gene-CFSAN001082_RS40380;Name=CFSAN001082_RS40380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40380;old_locus_tag=CFSAN001082_16775
NZ_APAH01000339.1	Protein Homology	CDS	7001	8050	.	+	0	ID=cds-WP_001804980.1;Parent=gene-CFSAN001082_RS40380;Dbxref=GenBank:WP_001804980.1;Name=WP_001804980.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001662924.1;locus_tag=CFSAN001082_RS40380;product=hypothetical protein;protein_id=WP_001804980.1;transl_table=11
NZ_APAH01000339.1	RefSeq	pseudogene	8170	8289	.	-	.	ID=gene-CFSAN001082_RS0123785;Name=CFSAN001082_RS0123785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0123785;partial=true;pseudo=true;start_range=.,8170
NZ_APAH01000339.1	Protein Homology	CDS	8170	8289	.	-	0	ID=cds-CFSAN001082_RS0123785;Parent=gene-CFSAN001082_RS0123785;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0090729,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=toxin activity|0090729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001532579.1;locus_tag=CFSAN001082_RS0123785;partial=true;product=type II toxin-antitoxin system RelE/ParE family toxin;pseudo=true;start_range=.,8170;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	8255	8611	.	-	.	ID=gene-CFSAN001082_RS40385;Name=CFSAN001082_RS40385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40385;old_locus_tag=CFSAN001082_16780
NZ_APAH01000339.1	Protein Homology	CDS	8255	8611	.	-	0	ID=cds-WP_023888681.1;Parent=gene-CFSAN001082_RS40385;Dbxref=GenBank:WP_023888681.1;Name=WP_023888681.1;Ontology_term=GO:0051983;gbkey=CDS;go_process=regulation of chromosome segregation|0051983||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461876.3;locus_tag=CFSAN001082_RS40385;product=type II toxin-antitoxin system ParD family antitoxin;protein_id=WP_023888681.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	8696	10930	.	-	.	ID=gene-CFSAN001082_RS40390;Name=relA;gbkey=Gene;gene=relA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40390;old_locus_tag=CFSAN001082_16785
NZ_APAH01000339.1	Protein Homology	CDS	8696	10930	.	-	0	ID=cds-WP_000226841.1;Parent=gene-CFSAN001082_RS40390;Dbxref=GenBank:WP_000226841.1;Name=WP_000226841.1;Ontology_term=GO:0015969;gbkey=CDS;gene=relA;go_process=guanosine tetraphosphate metabolic process|0015969||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461877.1;locus_tag=CFSAN001082_RS40390;product=GTP diphosphokinase;protein_id=WP_000226841.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	10982	12277	.	-	.	ID=gene-CFSAN001082_RS40395;Name=rlmD;gbkey=Gene;gene=rlmD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40395;old_locus_tag=CFSAN001082_16790
NZ_APAH01000339.1	Protein Homology	CDS	10982	12277	.	-	0	ID=cds-WP_023254629.1;Parent=gene-CFSAN001082_RS40395;Dbxref=GenBank:WP_023254629.1;Name=WP_023254629.1;Ontology_term=GO:0006396,GO:0008173;gbkey=CDS;gene=rlmD;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461878.1;locus_tag=CFSAN001082_RS40395;product=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;protein_id=WP_023254629.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	12335	15091	.	+	.	ID=gene-CFSAN001082_RS40400;Name=barA;gbkey=Gene;gene=barA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40400;old_locus_tag=CFSAN001082_16795
NZ_APAH01000339.1	Protein Homology	CDS	12335	15091	.	+	0	ID=cds-WP_000186400.1;Parent=gene-CFSAN001082_RS40400;Dbxref=GenBank:WP_000186400.1;Name=WP_000186400.1;Ontology_term=GO:0000160,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=barA;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461879.1;locus_tag=CFSAN001082_RS40400;product=two-component sensor histidine kinase BarA;protein_id=WP_000186400.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	15135	16277	.	-	.	ID=gene-CFSAN001082_RS40405;Name=CFSAN001082_RS40405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40405;old_locus_tag=CFSAN001082_16800
NZ_APAH01000339.1	Protein Homology	CDS	15135	16277	.	-	0	ID=cds-WP_000706486.1;Parent=gene-CFSAN001082_RS40405;Dbxref=GenBank:WP_000706486.1;Name=WP_000706486.1;Ontology_term=GO:0005524,GO:0008887;gbkey=CDS;go_function=ATP binding|0005524||IEA,glycerate kinase activity|0008887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461880.1;locus_tag=CFSAN001082_RS40405;product=glycerate kinase;protein_id=WP_000706486.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	16355	17695	.	-	.	ID=gene-CFSAN001082_RS40410;Name=gudD;gbkey=Gene;gene=gudD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40410;old_locus_tag=CFSAN001082_16805
NZ_APAH01000339.1	Protein Homology	CDS	16355	17695	.	-	0	ID=cds-WP_023254630.1;Parent=gene-CFSAN001082_RS40410;Dbxref=GenBank:WP_023254630.1;Name=WP_023254630.1;Ontology_term=GO:0019394,GO:0000287,GO:0008872;gbkey=CDS;gene=gudD;go_function=magnesium ion binding|0000287||IEA,glucarate dehydratase activity|0008872||IEA;go_process=glucarate catabolic process|0019394||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311674.1;locus_tag=CFSAN001082_RS40410;product=glucarate dehydratase;protein_id=WP_023254630.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	17716	19056	.	-	.	ID=gene-CFSAN001082_RS40415;Name=CFSAN001082_RS40415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40415;old_locus_tag=CFSAN001082_16810
NZ_APAH01000339.1	Protein Homology	CDS	17716	19056	.	-	0	ID=cds-WP_000211806.1;Parent=gene-CFSAN001082_RS40415;Dbxref=GenBank:WP_000211806.1;Name=WP_000211806.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461882.1;locus_tag=CFSAN001082_RS40415;product=enolase C-terminal domain-like protein;protein_id=WP_000211806.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	19053	20411	.	-	.	ID=gene-CFSAN001082_RS40420;Name=gudP;gbkey=Gene;gene=gudP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40420;old_locus_tag=CFSAN001082_16815
NZ_APAH01000339.1	Protein Homology	CDS	19053	20411	.	-	0	ID=cds-WP_000097015.1;Parent=gene-CFSAN001082_RS40420;Dbxref=GenBank:WP_000097015.1;Name=WP_000097015.1;gbkey=CDS;gene=gudP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461883.1;locus_tag=CFSAN001082_RS40420;product=galactarate/glucarate/glycerate transporter GudP;protein_id=WP_000097015.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	20893	21342	.	-	.	ID=gene-CFSAN001082_RS40425;Name=CFSAN001082_RS40425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40425;old_locus_tag=CFSAN001082_16820
NZ_APAH01000339.1	Protein Homology	CDS	20893	21342	.	-	0	ID=cds-WP_000807738.1;Parent=gene-CFSAN001082_RS40425;Dbxref=GenBank:WP_000807738.1;Name=WP_000807738.1;Ontology_term=GO:0010181;gbkey=CDS;go_function=FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461884.1;locus_tag=CFSAN001082_RS40425;product=flavodoxin;protein_id=WP_000807738.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	21361	22143	.	-	.	ID=gene-CFSAN001082_RS40430;Name=truC;gbkey=Gene;gene=truC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40430;old_locus_tag=CFSAN001082_16825
NZ_APAH01000339.1	Protein Homology	CDS	21361	22143	.	-	0	ID=cds-WP_000890028.1;Parent=gene-CFSAN001082_RS40430;Dbxref=GenBank:WP_000890028.1;Name=WP_000890028.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;gene=truC;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001715016.1;locus_tag=CFSAN001082_RS40430;product=tRNA pseudouridine(65) synthase TruC;protein_id=WP_000890028.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	22143	22472	.	-	.	ID=gene-CFSAN001082_RS40435;Name=CFSAN001082_RS40435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40435;old_locus_tag=CFSAN001082_16830
NZ_APAH01000339.1	Protein Homology	CDS	22143	22472	.	-	0	ID=cds-WP_001531830.1;Parent=gene-CFSAN001082_RS40435;Dbxref=GenBank:WP_001531830.1;Name=WP_001531830.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461886.1;locus_tag=CFSAN001082_RS40435;product=YqcC family protein;protein_id=WP_001531830.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	23083	23628	.	-	.	ID=gene-CFSAN001082_RS40445;Name=syd;gbkey=Gene;gene=syd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40445;old_locus_tag=CFSAN001082_16840
NZ_APAH01000339.1	Protein Homology	CDS	23083	23628	.	-	0	ID=cds-WP_000343990.1;Parent=gene-CFSAN001082_RS40445;Dbxref=GenBank:WP_000343990.1;Name=WP_000343990.1;Ontology_term=GO:0009898;gbkey=CDS;gene=syd;go_component=cytoplasmic side of plasma membrane|0009898||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461887.1;locus_tag=CFSAN001082_RS40445;product=SecY-interacting protein;protein_id=WP_000343990.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	23697	24545	.	+	.	ID=gene-CFSAN001082_RS40450;Name=queF;gbkey=Gene;gene=queF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40450;old_locus_tag=CFSAN001082_16845
NZ_APAH01000339.1	Protein Homology	CDS	23697	24545	.	+	0	ID=cds-WP_000100456.1;Parent=gene-CFSAN001082_RS40450;Dbxref=GenBank:WP_000100456.1;Name=WP_000100456.1;Note=Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis;Ontology_term=GO:0008616,GO:0033739,GO:0043867;gbkey=CDS;gene=queF;go_function=preQ1 synthase activity|0033739||IEA,7-cyano-7-deazaguanine tRNA-ribosyltransferase activity|0043867||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461888.1;locus_tag=CFSAN001082_RS40450;product=NADPH-dependent 7-cyano-7-deazaguanine reductase QueF;protein_id=WP_000100456.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	24658	26022	.	+	.	ID=gene-CFSAN001082_RS40455;Name=ppnN;gbkey=Gene;gene=ppnN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40455;old_locus_tag=CFSAN001082_16850
NZ_APAH01000339.1	Protein Homology	CDS	24658	26022	.	+	0	ID=cds-WP_000627973.1;Parent=gene-CFSAN001082_RS40455;Dbxref=GenBank:WP_000627973.1;Name=WP_000627973.1;gbkey=CDS;gene=ppnN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461889.1;locus_tag=CFSAN001082_RS40455;product=nucleotide 5'-monophosphate nucleosidase PpnN;protein_id=WP_000627973.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	26587	27876	.	+	.	ID=gene-CFSAN001082_RS40460;Name=sdaC;gbkey=Gene;gene=sdaC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40460;old_locus_tag=CFSAN001082_16855
NZ_APAH01000339.1	Protein Homology	CDS	26587	27876	.	+	0	ID=cds-WP_000450462.1;Parent=gene-CFSAN001082_RS40460;Dbxref=GenBank:WP_000450462.1;Name=WP_000450462.1;gbkey=CDS;gene=sdaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461890.1;locus_tag=CFSAN001082_RS40460;product=HAAAP family serine/threonine permease SdaC;protein_id=WP_000450462.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	27935	29302	.	+	.	ID=gene-CFSAN001082_RS40465;Name=sdaB;gbkey=Gene;gene=sdaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40465;old_locus_tag=CFSAN001082_16860
NZ_APAH01000339.1	Protein Homology	CDS	27935	29302	.	+	0	ID=cds-WP_023254631.1;Parent=gene-CFSAN001082_RS40465;Dbxref=GenBank:WP_023254631.1;Name=WP_023254631.1;gbkey=CDS;gene=sdaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461891.2;locus_tag=CFSAN001082_RS40465;product=L-serine ammonia-lyase II;protein_id=WP_023254631.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	29472	30227	.	+	.	ID=gene-CFSAN001082_RS40470;Name=xni;gbkey=Gene;gene=xni;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40470;old_locus_tag=CFSAN001082_16865
NZ_APAH01000339.1	Protein Homology	CDS	29472	30227	.	+	0	ID=cds-WP_023254632.1;Parent=gene-CFSAN001082_RS40470;Dbxref=GenBank:WP_023254632.1;Name=WP_023254632.1;Ontology_term=GO:0033567,GO:0003677,GO:0017108;gbkey=CDS;gene=xni;go_function=DNA binding|0003677||IEA,5'-flap endonuclease activity|0017108||IEA;go_process=DNA replication%2C Okazaki fragment processing|0033567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417278.4;locus_tag=CFSAN001082_RS40470;product=flap endonuclease Xni;protein_id=WP_023254632.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	30319	31467	.	-	.	ID=gene-CFSAN001082_RS40475;Name=fucO;gbkey=Gene;gene=fucO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40475;old_locus_tag=CFSAN001082_16870
NZ_APAH01000339.1	Protein Homology	CDS	30319	31467	.	-	0	ID=cds-WP_000013565.1;Parent=gene-CFSAN001082_RS40475;Dbxref=GenBank:WP_000013565.1;Name=WP_000013565.1;Ontology_term=GO:0016491;gbkey=CDS;gene=fucO;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461893.1;locus_tag=CFSAN001082_RS40475;product=lactaldehyde reductase;protein_id=WP_000013565.1;transl_table=11
NZ_APAH01000339.1	RefSeq	gene	31484	32131	.	-	.	ID=gene-CFSAN001082_RS40480;Name=fucA;gbkey=Gene;gene=fucA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40480;old_locus_tag=CFSAN001082_16875
NZ_APAH01000339.1	Protein Homology	CDS	31484	32131	.	-	0	ID=cds-WP_000440828.1;Parent=gene-CFSAN001082_RS40480;Dbxref=GenBank:WP_000440828.1;Name=WP_000440828.1;Ontology_term=GO:0006004,GO:0008270,GO:0008738;gbkey=CDS;gene=fucA;go_function=zinc ion binding|0008270||IEA,L-fuculose-phosphate aldolase activity|0008738||IEA;go_process=fucose metabolic process|0006004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461894.1;locus_tag=CFSAN001082_RS40480;product=L-fuculose-phosphate aldolase;protein_id=WP_000440828.1;transl_table=11
##sequence-region NZ_APAH01000340.1 1 15511
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000340.1	RefSeq	region	1	15511	.	+	.	ID=NZ_APAH01000340.1:1..15511;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000340.1	RefSeq	gene	193	636	.	+	.	ID=gene-CFSAN001082_RS40485;Name=nuoA;gbkey=Gene;gene=nuoA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40485;old_locus_tag=CFSAN001082_16880
NZ_APAH01000340.1	Protein Homology	CDS	193	636	.	+	0	ID=cds-WP_000062993.1;Parent=gene-CFSAN001082_RS40485;Dbxref=GenBank:WP_000062993.1;Name=WP_000062993.1;gbkey=CDS;gene=nuoA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461270.1;locus_tag=CFSAN001082_RS40485;product=NADH-quinone oxidoreductase subunit NuoA;protein_id=WP_000062993.1;transl_table=11
NZ_APAH01000340.1	RefSeq	gene	652	1314	.	+	.	ID=gene-CFSAN001082_RS40490;Name=nuoB;gbkey=Gene;gene=nuoB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40490;old_locus_tag=CFSAN001082_16885
NZ_APAH01000340.1	Protein Homology	CDS	652	1314	.	+	0	ID=cds-WP_000386728.1;Parent=gene-CFSAN001082_RS40490;Dbxref=GenBank:WP_000386728.1;Name=WP_000386728.1;gbkey=CDS;gene=nuoB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461269.1;locus_tag=CFSAN001082_RS40490;product=NADH-quinone oxidoreductase subunit NuoB;protein_id=WP_000386728.1;transl_table=11
NZ_APAH01000340.1	RefSeq	gene	1401	3203	.	+	.	ID=gene-CFSAN001082_RS40495;Name=nuoC;gbkey=Gene;gene=nuoC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40495;old_locus_tag=CFSAN001082_16890
NZ_APAH01000340.1	Protein Homology	CDS	1401	3203	.	+	0	ID=cds-WP_000247855.1;Parent=gene-CFSAN001082_RS40495;Dbxref=GenBank:WP_000247855.1;Name=WP_000247855.1;Ontology_term=GO:0048038,GO:0050136,GO:0051287,GO:0030964;gbkey=CDS;gene=nuoC;go_component=NADH dehydrogenase complex|0030964||IEA;go_function=quinone binding|0048038||IEA,NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461268.1;locus_tag=CFSAN001082_RS40495;product=NADH-quinone oxidoreductase subunit C/D;protein_id=WP_000247855.1;transl_table=11
NZ_APAH01000340.1	RefSeq	gene	3206	3706	.	+	.	ID=gene-CFSAN001082_RS40500;Name=nuoE;gbkey=Gene;gene=nuoE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40500;old_locus_tag=CFSAN001082_16895
NZ_APAH01000340.1	Protein Homology	CDS	3206	3706	.	+	0	ID=cds-WP_000545038.1;Parent=gene-CFSAN001082_RS40500;Dbxref=GenBank:WP_000545038.1;Name=WP_000545038.1;Ontology_term=GO:0016491;gbkey=CDS;gene=nuoE;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461267.1;locus_tag=CFSAN001082_RS40500;product=NADH-quinone oxidoreductase subunit NuoE;protein_id=WP_000545038.1;transl_table=11
NZ_APAH01000340.1	RefSeq	gene	3703	5040	.	+	.	ID=gene-CFSAN001082_RS40505;Name=nuoF;gbkey=Gene;gene=nuoF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40505;old_locus_tag=CFSAN001082_16900
NZ_APAH01000340.1	Protein Homology	CDS	3703	5040	.	+	0	ID=cds-WP_023201628.1;Parent=gene-CFSAN001082_RS40505;Dbxref=GenBank:WP_023201628.1;Name=WP_023201628.1;Ontology_term=GO:0008137,GO:0051539;gbkey=CDS;gene=nuoF;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461266.1;locus_tag=CFSAN001082_RS40505;product=NADH-quinone oxidoreductase subunit NuoF;protein_id=WP_023201628.1;transl_table=11
NZ_APAH01000340.1	RefSeq	gene	5071	7797	.	+	.	ID=gene-CFSAN001082_RS40510;Name=nuoG;gbkey=Gene;gene=nuoG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40510;old_locus_tag=CFSAN001082_16905
NZ_APAH01000340.1	Protein Homology	CDS	5071	7797	.	+	0	ID=cds-WP_001728014.1;Parent=gene-CFSAN001082_RS40510;Dbxref=GenBank:WP_001728014.1;Name=WP_001728014.1;Ontology_term=GO:0006120,GO:0050136,GO:0051536;gbkey=CDS;gene=nuoG;go_function=NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=mitochondrial electron transport%2C NADH to ubiquinone|0006120||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311194.2;locus_tag=CFSAN001082_RS40510;product=NADH-quinone oxidoreductase subunit NuoG;protein_id=WP_001728014.1;transl_table=11
NZ_APAH01000340.1	RefSeq	gene	7794	8771	.	+	.	ID=gene-CFSAN001082_RS40515;Name=nuoH;gbkey=Gene;gene=nuoH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40515;old_locus_tag=CFSAN001082_16910
NZ_APAH01000340.1	Protein Homology	CDS	7794	8771	.	+	0	ID=cds-WP_000118515.1;Parent=gene-CFSAN001082_RS40515;Dbxref=GenBank:WP_000118515.1;Name=WP_000118515.1;gbkey=CDS;gene=nuoH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015875065.1;locus_tag=CFSAN001082_RS40515;product=NADH-quinone oxidoreductase subunit NuoH;protein_id=WP_000118515.1;transl_table=11
NZ_APAH01000340.1	RefSeq	gene	8786	9328	.	+	.	ID=gene-CFSAN001082_RS40520;Name=nuoI;gbkey=Gene;gene=nuoI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40520;old_locus_tag=CFSAN001082_16915
NZ_APAH01000340.1	Protein Homology	CDS	8786	9328	.	+	0	ID=cds-WP_000172747.1;Parent=gene-CFSAN001082_RS40520;Dbxref=GenBank:WP_000172747.1;Name=WP_000172747.1;Ontology_term=GO:0016651,GO:0051539,GO:0016020;gbkey=CDS;gene=nuoI;go_component=membrane|0016020||IEA;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015959823.1;locus_tag=CFSAN001082_RS40520;product=NADH-quinone oxidoreductase subunit NuoI;protein_id=WP_000172747.1;transl_table=11
NZ_APAH01000340.1	RefSeq	gene	9339	9893	.	+	.	ID=gene-CFSAN001082_RS40525;Name=nuoJ;gbkey=Gene;gene=nuoJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40525;old_locus_tag=CFSAN001082_16920
NZ_APAH01000340.1	Protein Homology	CDS	9339	9893	.	+	0	ID=cds-WP_023254633.1;Parent=gene-CFSAN001082_RS40525;Dbxref=GenBank:WP_023254633.1;Name=WP_023254633.1;Ontology_term=GO:0008137;gbkey=CDS;gene=nuoJ;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461262.1;locus_tag=CFSAN001082_RS40525;product=NADH-quinone oxidoreductase subunit J;protein_id=WP_023254633.1;transl_table=11
NZ_APAH01000340.1	RefSeq	gene	9890	10192	.	+	.	ID=gene-CFSAN001082_RS40530;Name=nuoK;gbkey=Gene;gene=nuoK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40530;old_locus_tag=CFSAN001082_16925
NZ_APAH01000340.1	Protein Homology	CDS	9890	10192	.	+	0	ID=cds-WP_000612687.1;Parent=gene-CFSAN001082_RS40530;Dbxref=GenBank:WP_000612687.1;Name=WP_000612687.1;Ontology_term=GO:0042773,GO:0016651;gbkey=CDS;gene=nuoK;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006683663.1;locus_tag=CFSAN001082_RS40530;product=NADH-quinone oxidoreductase subunit NuoK;protein_id=WP_000612687.1;transl_table=11
NZ_APAH01000340.1	RefSeq	gene	10189	12030	.	+	.	ID=gene-CFSAN001082_RS40535;Name=nuoL;gbkey=Gene;gene=nuoL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40535;old_locus_tag=CFSAN001082_16930
NZ_APAH01000340.1	Protein Homology	CDS	10189	12030	.	+	0	ID=cds-WP_001056582.1;Parent=gene-CFSAN001082_RS40535;Dbxref=GenBank:WP_001056582.1;Name=WP_001056582.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoL;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129466.1;locus_tag=CFSAN001082_RS40535;product=NADH-quinone oxidoreductase subunit L;protein_id=WP_001056582.1;transl_table=11
NZ_APAH01000340.1	RefSeq	gene	12107	13636	.	+	.	ID=gene-CFSAN001082_RS40540;Name=nuoM;gbkey=Gene;gene=nuoM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40540;old_locus_tag=CFSAN001082_16935
NZ_APAH01000340.1	Protein Homology	CDS	12107	13636	.	+	0	ID=cds-WP_023241871.1;Parent=gene-CFSAN001082_RS40540;Dbxref=GenBank:WP_023241871.1;Name=WP_023241871.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoM;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129465.1;locus_tag=CFSAN001082_RS40540;product=NADH-quinone oxidoreductase subunit M;protein_id=WP_023241871.1;transl_table=11
NZ_APAH01000340.1	RefSeq	gene	13643	15100	.	+	.	ID=gene-CFSAN001082_RS40545;Name=nuoN;gbkey=Gene;gene=nuoN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40545;old_locus_tag=CFSAN001082_16940
NZ_APAH01000340.1	Protein Homology	CDS	13643	15100	.	+	0	ID=cds-WP_000156667.1;Parent=gene-CFSAN001082_RS40545;Dbxref=GenBank:WP_000156667.1;Name=WP_000156667.1;Ontology_term=GO:0008137;gbkey=CDS;gene=nuoN;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416779.2;locus_tag=CFSAN001082_RS40545;product=NADH-quinone oxidoreductase subunit NuoN;protein_id=WP_000156667.1;transl_table=11
##sequence-region NZ_APAH01000341.1 1 24271
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000341.1	RefSeq	region	1	24271	.	+	.	ID=NZ_APAH01000341.1:1..24271;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000341.1	RefSeq	gene	80	364	.	+	.	ID=gene-CFSAN001082_RS40550;Name=pduA;gbkey=Gene;gene=pduA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40550;old_locus_tag=CFSAN001082_16945
NZ_APAH01000341.1	Protein Homology	CDS	80	364	.	+	0	ID=cds-WP_001183618.1;Parent=gene-CFSAN001082_RS40550;Dbxref=GenBank:WP_001183618.1;Name=WP_001183618.1;gbkey=CDS;gene=pduA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460983.1;locus_tag=CFSAN001082_RS40550;product=propanediol utilization microcompartment protein PduA;protein_id=WP_001183618.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	361	1173	.	+	.	ID=gene-CFSAN001082_RS40555;Name=pduB;gbkey=Gene;gene=pduB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40555;old_locus_tag=CFSAN001082_16950
NZ_APAH01000341.1	Protein Homology	CDS	361	1173	.	+	0	ID=cds-WP_000097500.1;Parent=gene-CFSAN001082_RS40555;Dbxref=GenBank:WP_000097500.1;Name=WP_000097500.1;Ontology_term=GO:0005198,GO:0031469;gbkey=CDS;gene=pduB;go_component=bacterial microcompartment|0031469||IEA;go_function=structural molecule activity|0005198||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005228567.1;locus_tag=CFSAN001082_RS40555;product=propanediol utilization microcompartment protein PduB;protein_id=WP_000097500.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	1192	2856	.	+	.	ID=gene-CFSAN001082_RS40560;Name=pduC;gbkey=Gene;gene=pduC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40560;old_locus_tag=CFSAN001082_16955
NZ_APAH01000341.1	Protein Homology	CDS	1192	2856	.	+	0	ID=cds-WP_001256896.1;Parent=gene-CFSAN001082_RS40560;Dbxref=GenBank:WP_001256896.1;Name=WP_001256896.1;gbkey=CDS;gene=pduC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460985.1;locus_tag=CFSAN001082_RS40560;product=propanediol dehydratase large subunit PduC;protein_id=WP_001256896.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	2867	3541	.	+	.	ID=gene-CFSAN001082_RS40565;Name=pduD;gbkey=Gene;gene=pduD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40565;old_locus_tag=CFSAN001082_16960
NZ_APAH01000341.1	Protein Homology	CDS	2867	3541	.	+	0	ID=cds-WP_000405048.1;Parent=gene-CFSAN001082_RS40565;Dbxref=GenBank:WP_000405048.1;Name=WP_000405048.1;gbkey=CDS;gene=pduD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460986.1;locus_tag=CFSAN001082_RS40565;product=propanediol dehydratase medium subunit PduD;protein_id=WP_000405048.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	3556	4077	.	+	.	ID=gene-CFSAN001082_RS40570;Name=pduE;gbkey=Gene;gene=pduE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40570;old_locus_tag=CFSAN001082_16965
NZ_APAH01000341.1	Protein Homology	CDS	3556	4077	.	+	0	ID=cds-WP_001090597.1;Parent=gene-CFSAN001082_RS40570;Dbxref=GenBank:WP_001090597.1;Name=WP_001090597.1;gbkey=CDS;gene=pduE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460987.1;locus_tag=CFSAN001082_RS40570;product=propanediol dehydratase small subunit PduE;protein_id=WP_001090597.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	4087	5919	.	+	.	ID=gene-CFSAN001082_RS40575;Name=pduG;gbkey=Gene;gene=pduG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40575;old_locus_tag=CFSAN001082_16970
NZ_APAH01000341.1	Protein Homology	CDS	4087	5919	.	+	0	ID=cds-WP_023213493.1;Parent=gene-CFSAN001082_RS40575;Dbxref=GenBank:WP_023213493.1;Name=WP_023213493.1;gbkey=CDS;gene=pduG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460988.1;locus_tag=CFSAN001082_RS40575;product=propanediol dehydratase reactivase alpha subunit PduG;protein_id=WP_023213493.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	5909	6259	.	+	.	ID=gene-CFSAN001082_RS40580;Name=pduH;gbkey=Gene;gene=pduH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40580;old_locus_tag=CFSAN001082_16975
NZ_APAH01000341.1	Protein Homology	CDS	5909	6259	.	+	0	ID=cds-WP_000377969.1;Parent=gene-CFSAN001082_RS40580;Dbxref=GenBank:WP_000377969.1;Name=WP_000377969.1;gbkey=CDS;gene=pduH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460989.1;locus_tag=CFSAN001082_RS40580;product=propanediol dehydratase reactivase beta subunit PduH;protein_id=WP_000377969.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	6278	6553	.	+	.	ID=gene-CFSAN001082_RS40585;Name=pduJ;gbkey=Gene;gene=pduJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40585;old_locus_tag=CFSAN001082_16980
NZ_APAH01000341.1	Protein Homology	CDS	6278	6553	.	+	0	ID=cds-WP_001057755.1;Parent=gene-CFSAN001082_RS40585;Dbxref=GenBank:WP_001057755.1;Name=WP_001057755.1;gbkey=CDS;gene=pduJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460990.1;locus_tag=CFSAN001082_RS40585;product=propanediol utilization microcompartment protein PduJ;protein_id=WP_001057755.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	6557	7039	.	+	.	ID=gene-CFSAN001082_RS40590;Name=pduK;gbkey=Gene;gene=pduK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40590;old_locus_tag=CFSAN001082_16985
NZ_APAH01000341.1	Protein Homology	CDS	6557	7039	.	+	0	ID=cds-WP_001284381.1;Parent=gene-CFSAN001082_RS40590;Dbxref=GenBank:WP_001284381.1;Name=WP_001284381.1;gbkey=CDS;gene=pduK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460991.3;locus_tag=CFSAN001082_RS40590;product=propanediol utilization microcompartment protein PduK;protein_id=WP_001284381.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	7039	7671	.	+	.	ID=gene-CFSAN001082_RS40595;Name=CFSAN001082_RS40595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40595;old_locus_tag=CFSAN001082_16990
NZ_APAH01000341.1	Protein Homology	CDS	7039	7671	.	+	0	ID=cds-WP_023254634.1;Parent=gene-CFSAN001082_RS40595;Dbxref=GenBank:WP_023254634.1;Name=WP_023254634.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460992.1;locus_tag=CFSAN001082_RS40595;product=phosphate propanoyltransferase;protein_id=WP_023254634.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	7668	8159	.	+	.	ID=gene-CFSAN001082_RS40600;Name=pduM;gbkey=Gene;gene=pduM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40600;old_locus_tag=CFSAN001082_16995
NZ_APAH01000341.1	Protein Homology	CDS	7668	8159	.	+	0	ID=cds-WP_023254635.1;Parent=gene-CFSAN001082_RS40600;Dbxref=GenBank:WP_023254635.1;Name=WP_023254635.1;gbkey=CDS;gene=pduM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460993.1;locus_tag=CFSAN001082_RS40600;product=propanediol utilization microcompartment protein PduM;protein_id=WP_023254635.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	8163	8438	.	+	.	ID=gene-CFSAN001082_RS40605;Name=pduN;gbkey=Gene;gene=pduN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40605;old_locus_tag=CFSAN001082_17000
NZ_APAH01000341.1	Protein Homology	CDS	8163	8438	.	+	0	ID=cds-WP_000549825.1;Parent=gene-CFSAN001082_RS40605;Dbxref=GenBank:WP_000549825.1;Name=WP_000549825.1;gbkey=CDS;gene=pduN;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005228577.1;locus_tag=CFSAN001082_RS40605;product=propanediol utilization microcompartment protein PduN;protein_id=WP_000549825.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	8448	9458	.	+	.	ID=gene-CFSAN001082_RS40610;Name=pduO;gbkey=Gene;gene=pduO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40610;old_locus_tag=CFSAN001082_17005
NZ_APAH01000341.1	Protein Homology	CDS	8448	9458	.	+	0	ID=cds-WP_023254636.1;Parent=gene-CFSAN001082_RS40610;Dbxref=GenBank:WP_023254636.1;Name=WP_023254636.1;gbkey=CDS;gene=pduO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460995.1;locus_tag=CFSAN001082_RS40610;product=two-domain cob(I)yrinic acid a%2Cc-diamide adenosyltransferase PduO;protein_id=WP_023254636.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	9455	10849	.	+	.	ID=gene-CFSAN001082_RS40615;Name=pduP;gbkey=Gene;gene=pduP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40615;old_locus_tag=CFSAN001082_17010
NZ_APAH01000341.1	Protein Homology	CDS	9455	10849	.	+	0	ID=cds-WP_023254637.1;Parent=gene-CFSAN001082_RS40615;Dbxref=GenBank:WP_023254637.1;Name=WP_023254637.1;gbkey=CDS;gene=pduP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460996.1;locus_tag=CFSAN001082_RS40615;product=CoA-acylating propionaldehyde dehydrogenase PduP;protein_id=WP_023254637.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	10861	11973	.	+	.	ID=gene-CFSAN001082_RS40620;Name=pduQ;gbkey=Gene;gene=pduQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40620;old_locus_tag=CFSAN001082_17015
NZ_APAH01000341.1	Protein Homology	CDS	10861	11973	.	+	0	ID=cds-WP_017441809.1;Parent=gene-CFSAN001082_RS40620;Dbxref=GenBank:WP_017441809.1;Name=WP_017441809.1;gbkey=CDS;gene=pduQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460997.1;locus_tag=CFSAN001082_RS40620;product=1-propanol dehydrogenase PduQ;protein_id=WP_017441809.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	11970	13325	.	+	.	ID=gene-CFSAN001082_RS40625;Name=pduS;gbkey=Gene;gene=pduS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40625;old_locus_tag=CFSAN001082_17020
NZ_APAH01000341.1	Protein Homology	CDS	11970	13325	.	+	0	ID=cds-WP_023254638.1;Parent=gene-CFSAN001082_RS40625;Dbxref=GenBank:WP_023254638.1;Name=WP_023254638.1;gbkey=CDS;gene=pduS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460998.1;locus_tag=CFSAN001082_RS40625;product=cobalamin reductase PduS;protein_id=WP_023254638.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	13328	13882	.	+	.	ID=gene-CFSAN001082_RS40630;Name=pduT;gbkey=Gene;gene=pduT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40630;old_locus_tag=CFSAN001082_17025
NZ_APAH01000341.1	Protein Homology	CDS	13328	13882	.	+	0	ID=cds-WP_000075778.1;Parent=gene-CFSAN001082_RS40630;Dbxref=GenBank:WP_000075778.1;Name=WP_000075778.1;gbkey=CDS;gene=pduT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460999.1;locus_tag=CFSAN001082_RS40630;product=propanediol utilization microcompartment protein PduT;protein_id=WP_000075778.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	13882	14232	.	+	.	ID=gene-CFSAN001082_RS40635;Name=pduU;gbkey=Gene;gene=pduU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40635;old_locus_tag=CFSAN001082_17030
NZ_APAH01000341.1	Protein Homology	CDS	13882	14232	.	+	0	ID=cds-WP_000441100.1;Parent=gene-CFSAN001082_RS40635;Dbxref=GenBank:WP_000441100.1;Name=WP_000441100.1;gbkey=CDS;gene=pduU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461000.1;locus_tag=CFSAN001082_RS40635;product=propanediol utilization microcompartment protein PduU;protein_id=WP_000441100.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	14237	14689	.	+	.	ID=gene-CFSAN001082_RS40640;Name=pduV;gbkey=Gene;gene=pduV;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40640;old_locus_tag=CFSAN001082_17035
NZ_APAH01000341.1	Protein Homology	CDS	14237	14689	.	+	0	ID=cds-WP_000826277.1;Parent=gene-CFSAN001082_RS40640;Dbxref=GenBank:WP_000826277.1;Name=WP_000826277.1;gbkey=CDS;gene=pduV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461001.1;locus_tag=CFSAN001082_RS40640;product=propanediol utilization protein PduV;protein_id=WP_000826277.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	14674	15888	.	+	.	ID=gene-CFSAN001082_RS40645;Name=pduW;gbkey=Gene;gene=pduW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40645;old_locus_tag=CFSAN001082_17040
NZ_APAH01000341.1	Protein Homology	CDS	14674	15888	.	+	0	ID=cds-WP_000120647.1;Parent=gene-CFSAN001082_RS40645;Dbxref=GenBank:WP_000120647.1;Name=WP_000120647.1;gbkey=CDS;gene=pduW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461002.1;locus_tag=CFSAN001082_RS40645;product=propanediol utilization propionate kinase PduW;protein_id=WP_000120647.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	15982	16848	.	+	.	ID=gene-CFSAN001082_RS40650;Name=pduX;gbkey=Gene;gene=pduX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40650;old_locus_tag=CFSAN001082_17045
NZ_APAH01000341.1	Protein Homology	CDS	15982	16848	.	+	0	ID=cds-WP_001518728.1;Parent=gene-CFSAN001082_RS40650;Dbxref=GenBank:WP_001518728.1;Name=WP_001518728.1;gbkey=CDS;gene=pduX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015632997.1;locus_tag=CFSAN001082_RS40650;product=L-threonine kinase PduX;protein_id=WP_001518728.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	16882	17217	.	-	.	ID=gene-CFSAN001082_RS40655;Name=CFSAN001082_RS40655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40655;old_locus_tag=CFSAN001082_17050
NZ_APAH01000341.1	Protein Homology	CDS	16882	17217	.	-	0	ID=cds-WP_000450405.1;Parent=gene-CFSAN001082_RS40655;Dbxref=GenBank:WP_000450405.1;Name=WP_000450405.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461004.1;locus_tag=CFSAN001082_RS40655;product=DUF496 family protein;protein_id=WP_000450405.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	17462	18520	.	-	.	ID=gene-CFSAN001082_RS40660;Name=CFSAN001082_RS40660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40660;old_locus_tag=CFSAN001082_17055
NZ_APAH01000341.1	Protein Homology	CDS	17462	18520	.	-	0	ID=cds-WP_001200862.1;Parent=gene-CFSAN001082_RS40660;Dbxref=GenBank:WP_001200862.1;Name=WP_001200862.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461005.1;locus_tag=CFSAN001082_RS40660;product=FUSC family protein;protein_id=WP_001200862.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	18639	19106	.	-	.	ID=gene-CFSAN001082_RS40665;Name=sbmC;gbkey=Gene;gene=sbmC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40665;old_locus_tag=CFSAN001082_17060
NZ_APAH01000341.1	Protein Homology	CDS	18639	19106	.	-	0	ID=cds-WP_023254639.1;Parent=gene-CFSAN001082_RS40665;Dbxref=GenBank:WP_023254639.1;Name=WP_023254639.1;gbkey=CDS;gene=sbmC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461006.1;locus_tag=CFSAN001082_RS40665;product=DNA gyrase inhibitor SbmC;protein_id=WP_023254639.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	19257	20429	.	-	.	ID=gene-CFSAN001082_RS40670;Name=dacD;gbkey=Gene;gene=dacD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40670;old_locus_tag=CFSAN001082_17065
NZ_APAH01000341.1	Protein Homology	CDS	19257	20429	.	-	0	ID=cds-WP_031613008.1;Parent=gene-CFSAN001082_RS40670;Dbxref=GenBank:WP_031613008.1;Name=WP_031613008.1;Ontology_term=GO:0006508,GO:0009002;gbkey=CDS;gene=dacD;go_function=serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461007.1;locus_tag=CFSAN001082_RS40670;product=serine-type D-Ala-D-Ala carboxypeptidase DacD;protein_id=WP_031613008.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	20553	21317	.	-	.	ID=gene-CFSAN001082_RS40675;Name=phsC;gbkey=Gene;gene=phsC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40675;old_locus_tag=CFSAN001082_17070
NZ_APAH01000341.1	Protein Homology	CDS	20553	21317	.	-	0	ID=cds-WP_001092553.1;Parent=gene-CFSAN001082_RS40675;Dbxref=GenBank:WP_001092553.1;Name=WP_001092553.1;gbkey=CDS;gene=phsC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461008.1;locus_tag=CFSAN001082_RS40675;product=thiosulfate reductase cytochrome B subunit;protein_id=WP_001092553.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	21314	21892	.	-	.	ID=gene-CFSAN001082_RS40680;Name=phsB;gbkey=Gene;gene=phsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40680;old_locus_tag=CFSAN001082_17075
NZ_APAH01000341.1	Protein Homology	CDS	21314	21892	.	-	0	ID=cds-WP_001016236.1;Parent=gene-CFSAN001082_RS40680;Dbxref=GenBank:WP_001016236.1;Name=WP_001016236.1;gbkey=CDS;gene=phsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461009.1;locus_tag=CFSAN001082_RS40680;product=thiosulfate reductase electron transport protein PhsB;protein_id=WP_001016236.1;transl_table=11
NZ_APAH01000341.1	RefSeq	gene	21907	24183	.	-	.	ID=gene-CFSAN001082_RS40685;Name=phsA;gbkey=Gene;gene=phsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40685;old_locus_tag=CFSAN001082_17080
NZ_APAH01000341.1	Protein Homology	CDS	21907	24183	.	-	0	ID=cds-WP_023254641.1;Parent=gene-CFSAN001082_RS40685;Dbxref=GenBank:WP_023254641.1;Name=WP_023254641.1;Ontology_term=GO:0016491,GO:0043546,GO:0051539;gbkey=CDS;gene=phsA;go_function=oxidoreductase activity|0016491||IEA,molybdopterin cofactor binding|0043546||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461010.1;locus_tag=CFSAN001082_RS40685;product=thiosulfate reductase PhsA;protein_id=WP_023254641.1;transl_table=11
##sequence-region NZ_APAH01000342.1 1 1246
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000342.1	RefSeq	region	1	1246	.	+	.	ID=NZ_APAH01000342.1:1..1246;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000342.1	RefSeq	gene	1	1056	.	-	.	ID=gene-CFSAN001082_RS40690;Name=CFSAN001082_RS40690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40690;old_locus_tag=CFSAN001082_17085;partial=true;start_range=.,1
NZ_APAH01000342.1	Protein Homology	CDS	1	1056	.	-	0	ID=cds-WP_023254642.1;Parent=gene-CFSAN001082_RS40690;Dbxref=GenBank:WP_023254642.1;Name=WP_023254642.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463123.1;locus_tag=CFSAN001082_RS40690;partial=true;product=MotA/TolQ/ExbB proton channel family protein;protein_id=WP_023254642.1;start_range=.,1;transl_table=11
NZ_APAH01000342.1	RefSeq	pseudogene	1053	1246	.	-	.	ID=gene-CFSAN001082_RS40695;Name=siiA;end_range=1246,.;gbkey=Gene;gene=siiA;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS40695;old_locus_tag=CFSAN001082_17090;partial=true;pseudo=true
NZ_APAH01000342.1	Protein Homology	CDS	1053	1246	.	-	2	ID=cds-CFSAN001082_RS40695;Parent=gene-CFSAN001082_RS40695;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=1246,.;gbkey=CDS;gene=siiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463122.1;locus_tag=CFSAN001082_RS40695;partial=true;product=SPI-4 type I secretion system auxiliary protein SiiA;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000343.1 1 11661
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000343.1	RefSeq	region	1	11661	.	+	.	ID=NZ_APAH01000343.1:1..11661;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000343.1	RefSeq	gene	3	332	.	+	.	ID=gene-CFSAN001082_RS40700;Name=CFSAN001082_RS40700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40700;old_locus_tag=CFSAN001082_17095
NZ_APAH01000343.1	Protein Homology	CDS	3	332	.	+	0	ID=cds-WP_023254643.1;Parent=gene-CFSAN001082_RS40700;Dbxref=GenBank:WP_023254643.1;Name=WP_023254643.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015702912.1;locus_tag=CFSAN001082_RS40700;product=hypothetical protein;protein_id=WP_023254643.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	453	767	.	-	.	ID=gene-CFSAN001082_RS40705;Name=fliE;gbkey=Gene;gene=fliE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40705;old_locus_tag=CFSAN001082_17100
NZ_APAH01000343.1	Protein Homology	CDS	453	767	.	-	0	ID=cds-WP_000719042.1;Parent=gene-CFSAN001082_RS40705;Dbxref=GenBank:WP_000719042.1;Name=WP_000719042.1;Ontology_term=GO:0071973,GO:0003774,GO:0009431;gbkey=CDS;gene=fliE;go_component=bacterial-type flagellum basal body%2C MS ring|0009431||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460921.1;locus_tag=CFSAN001082_RS40705;product=flagellar hook-basal body complex protein FliE;protein_id=WP_000719042.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	984	2666	.	+	.	ID=gene-CFSAN001082_RS40710;Name=fliF;gbkey=Gene;gene=fliF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40710;old_locus_tag=CFSAN001082_17105
NZ_APAH01000343.1	Protein Homology	CDS	984	2666	.	+	0	ID=cds-WP_001276833.1;Parent=gene-CFSAN001082_RS40710;Dbxref=GenBank:WP_001276833.1;Name=WP_001276833.1;Ontology_term=GO:0001539,GO:0005198,GO:0009431;gbkey=CDS;gene=fliF;go_component=bacterial-type flagellum basal body%2C MS ring|0009431||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460922.1;locus_tag=CFSAN001082_RS40710;product=flagellar basal-body MS-ring/collar protein FliF;protein_id=WP_001276833.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	2659	3654	.	+	.	ID=gene-CFSAN001082_RS40715;Name=fliG;gbkey=Gene;gene=fliG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40715;old_locus_tag=CFSAN001082_17110
NZ_APAH01000343.1	Protein Homology	CDS	2659	3654	.	+	0	ID=cds-WP_000067735.1;Parent=gene-CFSAN001082_RS40715;Dbxref=GenBank:WP_000067735.1;Name=WP_000067735.1;Ontology_term=GO:0006935,GO:0071973,GO:0003774,GO:0009288;gbkey=CDS;gene=fliG;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=chemotaxis|0006935||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460923.1;locus_tag=CFSAN001082_RS40715;product=flagellar motor switch protein FliG;protein_id=WP_000067735.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	3647	4354	.	+	.	ID=gene-CFSAN001082_RS40720;Name=fliH;gbkey=Gene;gene=fliH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40720;old_locus_tag=CFSAN001082_17115
NZ_APAH01000343.1	Protein Homology	CDS	3647	4354	.	+	0	ID=cds-WP_000064158.1;Parent=gene-CFSAN001082_RS40720;Dbxref=GenBank:WP_000064158.1;Name=WP_000064158.1;Ontology_term=GO:0071973,GO:0003774,GO:0009288;gbkey=CDS;gene=fliH;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460924.1;locus_tag=CFSAN001082_RS40720;product=flagellar assembly protein FliH;protein_id=WP_000064158.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	4354	5724	.	+	.	ID=gene-CFSAN001082_RS40725;Name=fliI;gbkey=Gene;gene=fliI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40725;old_locus_tag=CFSAN001082_17120
NZ_APAH01000343.1	Protein Homology	CDS	4354	5724	.	+	0	ID=cds-WP_000213257.1;Parent=gene-CFSAN001082_RS40725;Dbxref=GenBank:WP_000213257.1;Name=WP_000213257.1;Ontology_term=GO:0044780,GO:0071973,GO:0016887;gbkey=CDS;gene=fliI;go_function=ATP hydrolysis activity|0016887||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460925.1;locus_tag=CFSAN001082_RS40725;product=flagellar protein export ATPase FliI;protein_id=WP_000213257.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	5746	6189	.	+	.	ID=gene-CFSAN001082_RS40730;Name=fliJ;gbkey=Gene;gene=fliJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40730;old_locus_tag=CFSAN001082_17125
NZ_APAH01000343.1	Protein Homology	CDS	5746	6189	.	+	0	ID=cds-WP_023254644.1;Parent=gene-CFSAN001082_RS40730;Dbxref=GenBank:WP_023254644.1;Name=WP_023254644.1;Ontology_term=GO:0071973,GO:0003774,GO:0009288;gbkey=CDS;gene=fliJ;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460926.1;locus_tag=CFSAN001082_RS40730;product=flagellar export protein FliJ;protein_id=WP_023254644.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	6186	7409	.	+	.	ID=gene-CFSAN001082_RS40735;Name=fliK;gbkey=Gene;gene=fliK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40735;old_locus_tag=CFSAN001082_17130
NZ_APAH01000343.1	Protein Homology	CDS	6186	7409	.	+	0	ID=cds-WP_023254645.1;Parent=gene-CFSAN001082_RS40735;Dbxref=GenBank:WP_023254645.1;Name=WP_023254645.1;Ontology_term=GO:0044780,GO:0009424;gbkey=CDS;gene=fliK;go_component=bacterial-type flagellum hook|0009424||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460927.1;locus_tag=CFSAN001082_RS40735;product=flagellar hook length control protein FliK;protein_id=WP_023254645.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	7514	7981	.	+	.	ID=gene-CFSAN001082_RS40740;Name=fliL;gbkey=Gene;gene=fliL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40740;old_locus_tag=CFSAN001082_17135
NZ_APAH01000343.1	Protein Homology	CDS	7514	7981	.	+	0	ID=cds-WP_000132169.1;Parent=gene-CFSAN001082_RS40740;Dbxref=GenBank:WP_000132169.1;Name=WP_000132169.1;Ontology_term=GO:0006935,GO:0071973,GO:0009425;gbkey=CDS;gene=fliL;go_component=bacterial-type flagellum basal body|0009425||IEA;go_process=chemotaxis|0006935||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460928.1;locus_tag=CFSAN001082_RS40740;product=flagellar basal body-associated protein FliL;protein_id=WP_000132169.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	7986	8990	.	+	.	ID=gene-CFSAN001082_RS40745;Name=fliM;gbkey=Gene;gene=fliM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40745;old_locus_tag=CFSAN001082_17140
NZ_APAH01000343.1	Protein Homology	CDS	7986	8990	.	+	0	ID=cds-WP_000502811.1;Parent=gene-CFSAN001082_RS40745;Dbxref=GenBank:WP_000502811.1;Name=WP_000502811.1;Ontology_term=GO:0001539,GO:0009288;gbkey=CDS;gene=fliM;go_component=bacterial-type flagellum|0009288||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005127760.1;locus_tag=CFSAN001082_RS40745;product=flagellar motor switch protein FliM;protein_id=WP_000502811.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	8987	9400	.	+	.	ID=gene-CFSAN001082_RS40750;Name=fliN;gbkey=Gene;gene=fliN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40750;old_locus_tag=CFSAN001082_17145
NZ_APAH01000343.1	Protein Homology	CDS	8987	9400	.	+	0	ID=cds-WP_001282111.1;Parent=gene-CFSAN001082_RS40750;Dbxref=GenBank:WP_001282111.1;Name=WP_001282111.1;Ontology_term=GO:0001539,GO:0003774,GO:0009288,GO:0016020;gbkey=CDS;gene=fliN;go_component=bacterial-type flagellum|0009288||IEA,membrane|0016020||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460930.1;locus_tag=CFSAN001082_RS40750;product=flagellar motor switch protein FliN;protein_id=WP_001282111.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	9400	9777	.	+	.	ID=gene-CFSAN001082_RS40755;Name=fliO;gbkey=Gene;gene=fliO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40755;old_locus_tag=CFSAN001082_17150
NZ_APAH01000343.1	Protein Homology	CDS	9400	9777	.	+	0	ID=cds-WP_000978276.1;Parent=gene-CFSAN001082_RS40755;Dbxref=GenBank:WP_000978276.1;Name=WP_000978276.1;Ontology_term=GO:0044781,GO:0016020;gbkey=CDS;gene=fliO;go_component=membrane|0016020||IEA;go_process=bacterial-type flagellum organization|0044781||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460931.3;locus_tag=CFSAN001082_RS40755;product=flagellar biosynthetic protein FliO;protein_id=WP_000978276.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	9777	10514	.	+	.	ID=gene-CFSAN001082_RS40760;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40760;old_locus_tag=CFSAN001082_17155
NZ_APAH01000343.1	Protein Homology	CDS	9777	10514	.	+	0	ID=cds-WP_001253414.1;Parent=gene-CFSAN001082_RS40760;Dbxref=GenBank:WP_001253414.1;Name=WP_001253414.1;Note=The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly.;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;gene=fliP;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460932.1;locus_tag=CFSAN001082_RS40760;product=flagellar type III secretion system pore protein FliP;protein_id=WP_001253414.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	10524	10793	.	+	.	ID=gene-CFSAN001082_RS40765;Name=fliQ;gbkey=Gene;gene=fliQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40765;old_locus_tag=CFSAN001082_17160
NZ_APAH01000343.1	Protein Homology	CDS	10524	10793	.	+	0	ID=cds-WP_000187355.1;Parent=gene-CFSAN001082_RS40765;Dbxref=GenBank:WP_000187355.1;Name=WP_000187355.1;Ontology_term=GO:0044780,GO:0016020;gbkey=CDS;gene=fliQ;go_component=membrane|0016020||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013365797.1;locus_tag=CFSAN001082_RS40765;product=flagellar biosynthesis protein FliQ;protein_id=WP_000187355.1;transl_table=11
NZ_APAH01000343.1	RefSeq	gene	10802	11596	.	+	.	ID=gene-CFSAN001082_RS40770;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40770;old_locus_tag=CFSAN001082_17165
NZ_APAH01000343.1	Protein Homology	CDS	10802	11596	.	+	0	ID=cds-WP_000616953.1;Parent=gene-CFSAN001082_RS40770;Dbxref=GenBank:WP_000616953.1;Name=WP_000616953.1;Ontology_term=GO:0006605,GO:0044780,GO:0016020;gbkey=CDS;gene=fliR;go_component=membrane|0016020||IEA;go_process=protein targeting|0006605||IEA,bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460934.1;locus_tag=CFSAN001082_RS40770;product=flagellar biosynthetic protein FliR;protein_id=WP_000616953.1;transl_table=11
##sequence-region NZ_APAH01000344.1 1 37351
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000344.1	RefSeq	region	1	37351	.	+	.	ID=NZ_APAH01000344.1:1..37351;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000344.1	RefSeq	gene	1	565	.	-	.	ID=gene-CFSAN001082_RS40775;Name=nudK;gbkey=Gene;gene=nudK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40775;old_locus_tag=CFSAN001082_17170;partial=true;start_range=.,1
NZ_APAH01000344.1	Protein Homology	CDS	1	565	.	-	0	ID=cds-WP_023254646.1;Parent=gene-CFSAN001082_RS40775;Dbxref=GenBank:WP_023254646.1;Name=WP_023254646.1;Ontology_term=GO:0016818,GO:0046872;gbkey=CDS;gene=nudK;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461412.1;locus_tag=CFSAN001082_RS40775;partial=true;product=GDP-mannose pyrophosphatase NudK;protein_id=WP_023254646.1;start_range=.,1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	769	2067	.	+	.	ID=gene-CFSAN001082_RS40780;Name=pbp4b;gbkey=Gene;gene=pbp4b;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40780;old_locus_tag=CFSAN001082_17175
NZ_APAH01000344.1	Protein Homology	CDS	769	2067	.	+	0	ID=cds-WP_000673285.1;Parent=gene-CFSAN001082_RS40780;Dbxref=GenBank:WP_000673285.1;Name=WP_000673285.1;gbkey=CDS;gene=pbp4b;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461413.1;locus_tag=CFSAN001082_RS40780;product=penicillin binding protein PBP4B;protein_id=WP_000673285.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	2516	4477	.	-	.	ID=gene-CFSAN001082_RS40785;Name=aegA;gbkey=Gene;gene=aegA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40785;old_locus_tag=CFSAN001082_17180
NZ_APAH01000344.1	Protein Homology	CDS	2516	4477	.	-	0	ID=cds-WP_023241620.1;Parent=gene-CFSAN001082_RS40785;Dbxref=GenBank:WP_023241620.1;Name=WP_023241620.1;Ontology_term=GO:0016491;gbkey=CDS;gene=aegA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461414.1;locus_tag=CFSAN001082_RS40785;product=formate-dependent uric acid utilization protein AegA;protein_id=WP_023241620.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	4663	6363	.	+	.	ID=gene-CFSAN001082_RS40790;Name=narQ;gbkey=Gene;gene=narQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40790;old_locus_tag=CFSAN001082_17185
NZ_APAH01000344.1	Protein Homology	CDS	4663	6363	.	+	0	ID=cds-WP_000216814.1;Parent=gene-CFSAN001082_RS40790;Dbxref=GenBank:WP_000216814.1;Name=WP_000216814.1;Ontology_term=GO:0000160,GO:0000155,GO:0046983,GO:0016020;gbkey=CDS;gene=narQ;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein dimerization activity|0046983||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461415.1;locus_tag=CFSAN001082_RS40790;product=nitrate/nitrite two-component system sensor histidine kinase NarQ;protein_id=WP_000216814.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	6548	9661	.	+	.	ID=gene-CFSAN001082_RS40795;Name=acrD;gbkey=Gene;gene=acrD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40795;old_locus_tag=CFSAN001082_17190
NZ_APAH01000344.1	Protein Homology	CDS	6548	9661	.	+	0	ID=cds-WP_001533680.1;Parent=gene-CFSAN001082_RS40795;Dbxref=GenBank:WP_001533680.1;Name=WP_001533680.1;Ontology_term=GO:0042908,GO:0015562;gbkey=CDS;gene=acrD;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=xenobiotic transport|0042908||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461416.1;locus_tag=CFSAN001082_RS40795;product=multidrug efflux RND transporter permease AcrD;protein_id=WP_001533680.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	9763	9822	.	-	.	ID=gene-CFSAN001082_RS48360;Name=ypfM;gbkey=Gene;gene=ypfM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48360
NZ_APAH01000344.1	Protein Homology	CDS	9763	9822	.	-	0	ID=cds-WP_001386977.1;Parent=gene-CFSAN001082_RS48360;Dbxref=GenBank:WP_001386977.1;Name=WP_001386977.1;gbkey=CDS;gene=ypfM;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165325.1;locus_tag=CFSAN001082_RS48360;product=protein YpfM;protein_id=WP_001386977.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	10235	10591	.	+	.	ID=gene-CFSAN001082_RS40800;Name=CFSAN001082_RS40800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40800;old_locus_tag=CFSAN001082_17195
NZ_APAH01000344.1	Protein Homology	CDS	10235	10591	.	+	0	ID=cds-WP_000631923.1;Parent=gene-CFSAN001082_RS40800;Dbxref=GenBank:WP_000631923.1;Name=WP_000631923.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461417.1;locus_tag=CFSAN001082_RS40800;product=ArsC family reductase;protein_id=WP_000631923.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	10595	11722	.	+	.	ID=gene-CFSAN001082_RS40805;Name=dapE;gbkey=Gene;gene=dapE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40805;old_locus_tag=CFSAN001082_17200
NZ_APAH01000344.1	Protein Homology	CDS	10595	11722	.	+	0	ID=cds-WP_001277822.1;Parent=gene-CFSAN001082_RS40805;Dbxref=GenBank:WP_001277822.1;Name=WP_001277822.1;Ontology_term=GO:0009089,GO:0009014;gbkey=CDS;gene=dapE;go_function=succinyl-diaminopimelate desuccinylase activity|0009014||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020078199.1;locus_tag=CFSAN001082_RS40805;product=succinyl-diaminopimelate desuccinylase;protein_id=WP_001277822.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	11750	11950	.	+	.	ID=gene-CFSAN001082_RS40810;Name=CFSAN001082_RS40810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40810;old_locus_tag=CFSAN001082_17205
NZ_APAH01000344.1	Protein Homology	CDS	11750	11950	.	+	0	ID=cds-WP_000383839.1;Parent=gene-CFSAN001082_RS40810;Dbxref=GenBank:WP_000383839.1;Name=WP_000383839.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461419.1;locus_tag=CFSAN001082_RS40810;product=YpfN family protein;protein_id=WP_000383839.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	11977	13995	.	-	.	ID=gene-CFSAN001082_RS40815;Name=tmcA;gbkey=Gene;gene=tmcA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40815;old_locus_tag=CFSAN001082_17210
NZ_APAH01000344.1	Protein Homology	CDS	11977	13995	.	-	0	ID=cds-WP_023254647.1;Parent=gene-CFSAN001082_RS40815;Dbxref=GenBank:WP_023254647.1;Name=WP_023254647.1;gbkey=CDS;gene=tmcA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461420.1;locus_tag=CFSAN001082_RS40815;product=tRNA cytosine(34) acetyltransferase TmcA;protein_id=WP_023254647.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	14011	14874	.	-	.	ID=gene-CFSAN001082_RS40820;Name=ypfJ;gbkey=Gene;gene=ypfJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40820;old_locus_tag=CFSAN001082_17215
NZ_APAH01000344.1	Protein Homology	CDS	14011	14874	.	-	0	ID=cds-WP_001267523.1;Parent=gene-CFSAN001082_RS40820;Dbxref=GenBank:WP_001267523.1;Name=WP_001267523.1;gbkey=CDS;gene=ypfJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461421.1;locus_tag=CFSAN001082_RS40820;product=KPN_02809 family neutral zinc metallopeptidase;protein_id=WP_001267523.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	15005	15718	.	-	.	ID=gene-CFSAN001082_RS40825;Name=purC;gbkey=Gene;gene=purC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40825;old_locus_tag=CFSAN001082_17220
NZ_APAH01000344.1	Protein Homology	CDS	15005	15718	.	-	0	ID=cds-WP_001171630.1;Parent=gene-CFSAN001082_RS40825;Dbxref=GenBank:WP_001171630.1;Name=WP_001171630.1;Ontology_term=GO:0006164,GO:0004639;gbkey=CDS;gene=purC;go_function=phosphoribosylaminoimidazolesuccinocarboxamide synthase activity|0004639||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017458944.1;locus_tag=CFSAN001082_RS40825;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=WP_001171630.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	15893	16927	.	-	.	ID=gene-CFSAN001082_RS40830;Name=bamC;gbkey=Gene;gene=bamC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40830;old_locus_tag=CFSAN001082_17225
NZ_APAH01000344.1	Protein Homology	CDS	15893	16927	.	-	0	ID=cds-WP_000331877.1;Parent=gene-CFSAN001082_RS40830;Dbxref=GenBank:WP_000331877.1;Name=WP_000331877.1;gbkey=CDS;gene=bamC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461423.1;locus_tag=CFSAN001082_RS40830;product=outer membrane protein assembly factor BamC;protein_id=WP_000331877.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	16944	17822	.	-	.	ID=gene-CFSAN001082_RS40835;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40835;old_locus_tag=CFSAN001082_17230
NZ_APAH01000344.1	Protein Homology	CDS	16944	17822	.	-	0	ID=cds-WP_000494020.1;Parent=gene-CFSAN001082_RS40835;Dbxref=GenBank:WP_000494020.1;Name=WP_000494020.1;Ontology_term=GO:0009089,GO:0008840;gbkey=CDS;gene=dapA;go_function=4-hydroxy-tetrahydrodipicolinate synthase activity|0008840||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001311023.1;locus_tag=CFSAN001082_RS40835;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_000494020.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	17968	18540	.	+	.	ID=gene-CFSAN001082_RS40840;Name=CFSAN001082_RS40840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40840;old_locus_tag=CFSAN001082_17235
NZ_APAH01000344.1	Protein Homology	CDS	17968	18540	.	+	0	ID=cds-WP_000189061.1;Parent=gene-CFSAN001082_RS40840;Dbxref=GenBank:WP_000189061.1;Name=WP_000189061.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708318.1;locus_tag=CFSAN001082_RS40840;product=glycine cleavage system transcriptional repressor;protein_id=WP_000189061.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	18540	19010	.	+	.	ID=gene-CFSAN001082_RS40845;Name=bcp;gbkey=Gene;gene=bcp;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40845;old_locus_tag=CFSAN001082_17240
NZ_APAH01000344.1	Protein Homology	CDS	18540	19010	.	+	0	ID=cds-WP_001068686.1;Parent=gene-CFSAN001082_RS40845;Dbxref=GenBank:WP_001068686.1;Name=WP_001068686.1;Ontology_term=GO:0016209,GO:0016491;gbkey=CDS;gene=bcp;go_function=antioxidant activity|0016209||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461426.1;locus_tag=CFSAN001082_RS40845;product=thioredoxin-dependent thiol peroxidase;protein_id=WP_001068686.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	19057	20196	.	-	.	ID=gene-CFSAN001082_RS40850;Name=CFSAN001082_RS40850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40850;old_locus_tag=CFSAN001082_17245
NZ_APAH01000344.1	Protein Homology	CDS	19057	20196	.	-	0	ID=cds-WP_000706384.1;Parent=gene-CFSAN001082_RS40850;Dbxref=GenBank:WP_000706384.1;Name=WP_000706384.1;Ontology_term=GO:0005524,GO:0008887;gbkey=CDS;go_function=ATP binding|0005524||IEA,glycerate kinase activity|0008887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000706371.1;locus_tag=CFSAN001082_RS40850;product=glycerate kinase;protein_id=WP_000706384.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	20202	21470	.	-	.	ID=gene-CFSAN001082_RS40855;Name=CFSAN001082_RS40855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40855;old_locus_tag=CFSAN001082_17250
NZ_APAH01000344.1	Protein Homology	CDS	20202	21470	.	-	0	ID=cds-WP_000200859.1;Parent=gene-CFSAN001082_RS40855;Dbxref=GenBank:WP_000200859.1;Name=WP_000200859.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004090684.1;locus_tag=CFSAN001082_RS40855;product=GntP family permease;protein_id=WP_000200859.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	21538	22725	.	-	.	ID=gene-CFSAN001082_RS40860;Name=CFSAN001082_RS40860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40860;old_locus_tag=CFSAN001082_17255
NZ_APAH01000344.1	Protein Homology	CDS	21538	22725	.	-	0	ID=cds-WP_023205179.1;Parent=gene-CFSAN001082_RS40860;Dbxref=GenBank:WP_023205179.1;Name=WP_023205179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001667973.1;locus_tag=CFSAN001082_RS40860;product=sugar diacid recognition domain-containing protein;protein_id=WP_023205179.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	23002	24069	.	-	.	ID=gene-CFSAN001082_RS40865;Name=CFSAN001082_RS40865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40865;old_locus_tag=CFSAN001082_17260
NZ_APAH01000344.1	Protein Homology	CDS	23002	24069	.	-	0	ID=cds-WP_000892056.1;Parent=gene-CFSAN001082_RS40865;Dbxref=GenBank:WP_000892056.1;Name=WP_000892056.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461428.1;locus_tag=CFSAN001082_RS40865;product=AI-2E family transporter;protein_id=WP_000892056.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	24277	25740	.	+	.	ID=gene-CFSAN001082_RS40870;Name=bepA;gbkey=Gene;gene=bepA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40870;old_locus_tag=CFSAN001082_17265
NZ_APAH01000344.1	Protein Homology	CDS	24277	25740	.	+	0	ID=cds-WP_000489631.1;Parent=gene-CFSAN001082_RS40870;Dbxref=GenBank:WP_000489631.1;Name=WP_000489631.1;gbkey=CDS;gene=bepA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461429.1;locus_tag=CFSAN001082_RS40870;product=beta-barrel assembly-enhancing protease;protein_id=WP_000489631.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	25780	26139	.	+	.	ID=gene-CFSAN001082_RS40875;Name=arsC;gbkey=Gene;gene=arsC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40875;old_locus_tag=CFSAN001082_17270
NZ_APAH01000344.1	Protein Homology	CDS	25780	26139	.	+	0	ID=cds-WP_023254648.1;Parent=gene-CFSAN001082_RS40875;Dbxref=GenBank:WP_023254648.1;Name=WP_023254648.1;Note=This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite%2C after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell%2C providing resistance.;Ontology_term=GO:0046685,GO:0008794;gbkey=CDS;gene=arsC;go_function=arsenate reductase (glutaredoxin) activity|0008794||IEA;go_process=response to arsenic-containing substance|0046685||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461430.1;locus_tag=CFSAN001082_RS40875;product=arsenate reductase (glutaredoxin);protein_id=WP_023254648.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	26166	26867	.	-	.	ID=gene-CFSAN001082_RS40880;Name=CFSAN001082_RS40880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40880;old_locus_tag=CFSAN001082_17275
NZ_APAH01000344.1	Protein Homology	CDS	26166	26867	.	-	0	ID=cds-WP_061835882.1;Parent=gene-CFSAN001082_RS40880;Dbxref=GenBank:WP_061835882.1;Name=WP_061835882.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416991.2;locus_tag=CFSAN001082_RS40880;product=DnaA inactivator Hda;protein_id=WP_061835882.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	26962	28251	.	-	.	ID=gene-CFSAN001082_RS40885;Name=uraA;gbkey=Gene;gene=uraA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40885;old_locus_tag=CFSAN001082_17280
NZ_APAH01000344.1	Protein Homology	CDS	26962	28251	.	-	0	ID=cds-WP_000198343.1;Parent=gene-CFSAN001082_RS40885;Dbxref=GenBank:WP_000198343.1;Name=WP_000198343.1;Ontology_term=GO:0022857;gbkey=CDS;gene=uraA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461432.1;locus_tag=CFSAN001082_RS40885;product=uracil permease;protein_id=WP_000198343.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	28339	28965	.	-	.	ID=gene-CFSAN001082_RS40890;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40890;old_locus_tag=CFSAN001082_17285
NZ_APAH01000344.1	Protein Homology	CDS	28339	28965	.	-	0	ID=cds-WP_000706208.1;Parent=gene-CFSAN001082_RS40890;Dbxref=GenBank:WP_000706208.1;Name=WP_000706208.1;Ontology_term=GO:0009116,GO:0004845;gbkey=CDS;gene=upp;go_function=uracil phosphoribosyltransferase activity|0004845||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001295473.1;locus_tag=CFSAN001082_RS40890;product=uracil phosphoribosyltransferase;protein_id=WP_000706208.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	29380	30417	.	+	.	ID=gene-CFSAN001082_RS40895;Name=purM;gbkey=Gene;gene=purM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40895;old_locus_tag=CFSAN001082_17290
NZ_APAH01000344.1	Protein Homology	CDS	29380	30417	.	+	0	ID=cds-WP_000130477.1;Parent=gene-CFSAN001082_RS40895;Dbxref=GenBank:WP_000130477.1;Name=WP_000130477.1;Ontology_term=GO:0006189,GO:0004641;gbkey=CDS;gene=purM;go_function=phosphoribosylformylglycinamidine cyclo-ligase activity|0004641||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001656828.1;locus_tag=CFSAN001082_RS40895;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=WP_000130477.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	30417	31055	.	+	.	ID=gene-CFSAN001082_RS40900;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40900;old_locus_tag=CFSAN001082_17295
NZ_APAH01000344.1	Protein Homology	CDS	30417	31055	.	+	0	ID=cds-WP_001028588.1;Parent=gene-CFSAN001082_RS40900;Dbxref=GenBank:WP_001028588.1;Name=WP_001028588.1;Ontology_term=GO:0006189,GO:0004644;gbkey=CDS;gene=purN;go_function=phosphoribosylglycinamide formyltransferase activity|0004644||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461435.1;locus_tag=CFSAN001082_RS40900;product=phosphoribosylglycinamide formyltransferase;protein_id=WP_001028588.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	31244	33310	.	+	.	ID=gene-CFSAN001082_RS40905;Name=ppk1;gbkey=Gene;gene=ppk1;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40905;old_locus_tag=CFSAN001082_17300
NZ_APAH01000344.1	Protein Homology	CDS	31244	33310	.	+	0	ID=cds-WP_000529555.1;Parent=gene-CFSAN001082_RS40905;Dbxref=GenBank:WP_000529555.1;Name=WP_000529555.1;Ontology_term=GO:0006799,GO:0008976,GO:0009358;gbkey=CDS;gene=ppk1;go_component=polyphosphate kinase complex|0009358||IEA;go_function=polyphosphate kinase activity|0008976||IEA;go_process=polyphosphate biosynthetic process|0006799||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461436.1;locus_tag=CFSAN001082_RS40905;product=polyphosphate kinase 1;protein_id=WP_000529555.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	33315	34856	.	+	.	ID=gene-CFSAN001082_RS40910;Name=ppx;gbkey=Gene;gene=ppx;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40910;old_locus_tag=CFSAN001082_17305
NZ_APAH01000344.1	Protein Homology	CDS	33315	34856	.	+	0	ID=cds-WP_023254649.1;Parent=gene-CFSAN001082_RS40910;Dbxref=GenBank:WP_023254649.1;Name=WP_023254649.1;Ontology_term=GO:0006798,GO:0000287,GO:0004309;gbkey=CDS;gene=ppx;go_function=magnesium ion binding|0000287||IEA,exopolyphosphatase activity|0004309||IEA;go_process=polyphosphate catabolic process|0006798||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461437.1;locus_tag=CFSAN001082_RS40910;product=exopolyphosphatase;protein_id=WP_023254649.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	34892	37105	.	-	.	ID=gene-CFSAN001082_RS40915;Name=CFSAN001082_RS40915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40915;old_locus_tag=CFSAN001082_17310
NZ_APAH01000344.1	Protein Homology	CDS	34892	37105	.	-	0	ID=cds-WP_023254650.1;Parent=gene-CFSAN001082_RS40915;Dbxref=GenBank:WP_023254650.1;Name=WP_023254650.1;Ontology_term=GO:0007165,GO:0005525,GO:0046872,GO:0052621,GO:0071111;gbkey=CDS;go_function=GTP binding|0005525||IEA,metal ion binding|0046872||IEA,diguanylate cyclase activity|0052621||IEA,cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461438.1;locus_tag=CFSAN001082_RS40915;product=bifunctional diguanylate cyclase/phosphodiesterase;protein_id=WP_023254650.1;transl_table=11
NZ_APAH01000344.1	RefSeq	gene	37202	37339	.	-	.	ID=gene-CFSAN001082_RS40920;Name=CFSAN001082_RS40920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40920;old_locus_tag=CFSAN001082_17315
NZ_APAH01000344.1	Protein Homology	CDS	37202	37339	.	-	0	ID=cds-WP_001540598.1;Parent=gene-CFSAN001082_RS40920;Dbxref=GenBank:WP_001540598.1;Name=WP_001540598.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448898.1;locus_tag=CFSAN001082_RS40920;product=hypothetical protein;protein_id=WP_001540598.1;transl_table=11
##sequence-region NZ_APAH01000345.1 1 2807
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000345.1	RefSeq	region	1	2807	.	+	.	ID=NZ_APAH01000345.1:1..2807;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000345.1	RefSeq	gene	1	269	.	-	.	ID=gene-CFSAN001082_RS40925;Name=yqfB;gbkey=Gene;gene=yqfB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40925;old_locus_tag=CFSAN001082_17320;partial=true;start_range=.,1
NZ_APAH01000345.1	Protein Homology	CDS	1	269	.	-	0	ID=cds-WP_023254652.1;Parent=gene-CFSAN001082_RS40925;Dbxref=GenBank:WP_023254652.1;Name=WP_023254652.1;gbkey=CDS;gene=yqfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461966.1;locus_tag=CFSAN001082_RS40925;partial=true;product=N(4)-acetylcytidine aminohydrolase;protein_id=WP_023254652.1;start_range=.,1;transl_table=11
NZ_APAH01000345.1	RefSeq	gene	428	1861	.	+	.	ID=gene-CFSAN001082_RS40930;Name=bglA;gbkey=Gene;gene=bglA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40930;old_locus_tag=CFSAN001082_17325
NZ_APAH01000345.1	Protein Homology	CDS	428	1861	.	+	0	ID=cds-WP_023254653.1;Parent=gene-CFSAN001082_RS40930;Dbxref=GenBank:WP_023254653.1;Name=WP_023254653.1;gbkey=CDS;gene=bglA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461967.1;locus_tag=CFSAN001082_RS40930;product=6-phospho-beta-glucosidase BglA;protein_id=WP_023254653.1;transl_table=11
NZ_APAH01000345.1	RefSeq	gene	1909	2802	.	-	.	ID=gene-CFSAN001082_RS40935;Name=CFSAN001082_RS40935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40935;old_locus_tag=CFSAN001082_17330
NZ_APAH01000345.1	Protein Homology	CDS	1909	2802	.	-	0	ID=cds-WP_000819375.1;Parent=gene-CFSAN001082_RS40935;Dbxref=GenBank:WP_000819375.1;Name=WP_000819375.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461968.1;locus_tag=CFSAN001082_RS40935;product=transporter;protein_id=WP_000819375.1;transl_table=11
##sequence-region NZ_APAH01000346.1 1 309
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000346.1	RefSeq	region	1	309	.	+	.	ID=NZ_APAH01000346.1:1..309;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000346.1	RefSeq	gene	1	309	.	-	.	ID=gene-CFSAN001082_RS47375;Name=CFSAN001082_RS47375;end_range=309,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47375;partial=true;start_range=.,1
NZ_APAH01000346.1	Protein Homology	CDS	1	309	.	-	2	ID=cds-WP_024150318.1;Parent=gene-CFSAN001082_RS47375;Dbxref=GenBank:WP_024150318.1;Name=WP_024150318.1;Ontology_term=GO:0004519;end_range=309,.;gbkey=CDS;go_function=endonuclease activity|0004519||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015976816.1;locus_tag=CFSAN001082_RS47375;partial=true;product=HNH endonuclease signature motif containing protein;protein_id=WP_024150318.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000347.1 1 3656
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000347.1	RefSeq	region	1	3656	.	+	.	ID=NZ_APAH01000347.1:1..3656;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000347.1	RefSeq	gene	113	355	.	+	.	ID=gene-CFSAN001082_RS40940;Name=CFSAN001082_RS40940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40940;old_locus_tag=CFSAN001082_17335
NZ_APAH01000347.1	Protein Homology	CDS	113	355	.	+	0	ID=cds-WP_000639889.1;Parent=gene-CFSAN001082_RS40940;Dbxref=GenBank:WP_000639889.1;Name=WP_000639889.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461341.1;locus_tag=CFSAN001082_RS40940;product=YfdY family protein;protein_id=WP_000639889.1;transl_table=11
NZ_APAH01000347.1	RefSeq	gene	594	1985	.	-	.	ID=gene-CFSAN001082_RS40945;Name=pgtP;gbkey=Gene;gene=pgtP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40945;old_locus_tag=CFSAN001082_17340
NZ_APAH01000347.1	Protein Homology	CDS	594	1985	.	-	0	ID=cds-WP_020437486.1;Parent=gene-CFSAN001082_RS40945;Dbxref=GenBank:WP_020437486.1;Name=WP_020437486.1;Ontology_term=GO:0015760,GO:0035435,GO:0061513;gbkey=CDS;gene=pgtP;go_function=glucose 6-phosphate:phosphate antiporter activity|0061513||IEA;go_process=glucose-6-phosphate transport|0015760||IEA,phosphate ion transmembrane transport|0035435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461340.1;locus_tag=CFSAN001082_RS40945;product=phosphoglycerate transporter PgtP;protein_id=WP_020437486.1;transl_table=11
NZ_APAH01000347.1	RefSeq	gene	2421	3614	.	+	.	ID=gene-CFSAN001082_RS40950;Name=pgtC;gbkey=Gene;gene=pgtC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40950;old_locus_tag=CFSAN001082_17345
NZ_APAH01000347.1	Protein Homology	CDS	2421	3614	.	+	0	ID=cds-WP_000467985.1;Parent=gene-CFSAN001082_RS40950;Dbxref=GenBank:WP_000467985.1;Name=WP_000467985.1;gbkey=CDS;gene=pgtC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461339.1;locus_tag=CFSAN001082_RS40950;product=phosphoglycerate transport regulator PgtC;protein_id=WP_000467985.1;transl_table=11
##sequence-region NZ_APAH01000348.1 1 11317
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000348.1	RefSeq	region	1	11317	.	+	.	ID=NZ_APAH01000348.1:1..11317;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000348.1	RefSeq	gene	55	552	.	+	.	ID=gene-CFSAN001082_RS40955;Name=ftnA;gbkey=Gene;gene=ftnA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40955;old_locus_tag=CFSAN001082_17350
NZ_APAH01000348.1	Protein Homology	CDS	55	552	.	+	0	ID=cds-WP_000920619.1;Parent=gene-CFSAN001082_RS40955;Dbxref=GenBank:WP_000920619.1;Name=WP_000920619.1;Ontology_term=GO:0006879,GO:0008199;gbkey=CDS;gene=ftnA;go_function=ferric iron binding|0008199||IEA;go_process=intracellular iron ion homeostasis|0006879||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000920608.1;locus_tag=CFSAN001082_RS40955;product=non-heme ferritin;protein_id=WP_000920619.1;transl_table=11
NZ_APAH01000348.1	RefSeq	gene	598	837	.	-	.	ID=gene-CFSAN001082_RS40960;Name=CFSAN001082_RS40960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40960;old_locus_tag=CFSAN001082_17355
NZ_APAH01000348.1	Protein Homology	CDS	598	837	.	-	0	ID=cds-WP_000377238.1;Parent=gene-CFSAN001082_RS40960;Dbxref=GenBank:WP_000377238.1;Name=WP_000377238.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460892.1;locus_tag=CFSAN001082_RS40960;product=YecH family metal-binding protein;protein_id=WP_000377238.1;transl_table=11
NZ_APAH01000348.1	RefSeq	gene	1064	2275	.	+	.	ID=gene-CFSAN001082_RS40965;Name=tyrP;gbkey=Gene;gene=tyrP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40965;old_locus_tag=CFSAN001082_17360
NZ_APAH01000348.1	Protein Homology	CDS	1064	2275	.	+	0	ID=cds-WP_001562965.1;Parent=gene-CFSAN001082_RS40965;Dbxref=GenBank:WP_001562965.1;Name=WP_001562965.1;Ontology_term=GO:0015801,GO:0015173,GO:0005886;gbkey=CDS;gene=tyrP;go_component=plasma membrane|0005886||IEA;go_function=aromatic amino acid transmembrane transporter activity|0015173||IEA;go_process=aromatic amino acid transport|0015801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460893.1;locus_tag=CFSAN001082_RS40965;product=tyrosine transporter TyrP;protein_id=WP_001562965.1;transl_table=11
NZ_APAH01000348.1	RefSeq	gene	2350	3015	.	-	.	ID=gene-CFSAN001082_RS40970;Name=CFSAN001082_RS40970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40970;old_locus_tag=CFSAN001082_17365
NZ_APAH01000348.1	Protein Homology	CDS	2350	3015	.	-	0	ID=cds-WP_000781521.1;Parent=gene-CFSAN001082_RS40970;Dbxref=GenBank:WP_000781521.1;Name=WP_000781521.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460894.1;locus_tag=CFSAN001082_RS40970;product=YecA family protein;protein_id=WP_000781521.1;transl_table=11
NZ_APAH01000348.1	RefSeq	gene	3254	3580	.	-	.	ID=gene-CFSAN001082_RS40975;Name=CFSAN001082_RS40975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40975;old_locus_tag=CFSAN001082_17370
NZ_APAH01000348.1	Protein Homology	CDS	3254	3580	.	-	0	ID=cds-WP_000240837.1;Parent=gene-CFSAN001082_RS40975;Dbxref=GenBank:WP_000240837.1;Name=WP_000240837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460895.1;locus_tag=CFSAN001082_RS40975;product=glucose-6-phosphate dehydrogenase;protein_id=WP_000240837.1;transl_table=11
NZ_APAH01000348.1	RefSeq	gene	3793	5232	.	-	.	ID=gene-CFSAN001082_RS40980;Name=CFSAN001082_RS40980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS40980;old_locus_tag=CFSAN001082_17375
NZ_APAH01000348.1	Protein Homology	CDS	3793	5232	.	-	0	ID=cds-WP_077911170.1;Parent=gene-CFSAN001082_RS40980;Dbxref=GenBank:WP_077911170.1;Name=WP_077911170.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460896.1;locus_tag=CFSAN001082_RS40980;product=SH3 domain-containing C40 family peptidase;protein_id=WP_077911170.1;transl_table=11
NZ_APAH01000348.1	RefSeq	pseudogene	5447	5778	.	-	.	ID=gene-CFSAN001082_RS40985;Name=CFSAN001082_RS40985;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS40985;old_locus_tag=CFSAN001082_17380;pseudo=true
NZ_APAH01000348.1	Protein Homology	CDS	5447	5778	.	-	0	ID=cds-CFSAN001082_RS40985;Parent=gene-CFSAN001082_RS40985;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460897.1;locus_tag=CFSAN001082_RS40985;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000348.1	RefSeq	gene	6029	6115	.	-	.	ID=gene-CFSAN001082_RS40990;Name=CFSAN001082_RS40990;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS40990;old_locus_tag=CFSAN001082_t17417
NZ_APAH01000348.1	tRNAscan-SE	tRNA	6029	6115	.	-	.	ID=rna-CFSAN001082_RS40990;Parent=gene-CFSAN001082_RS40990;anticodon=(pos:complement(6079..6081));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS40990;product=tRNA-Leu
NZ_APAH01000348.1	tRNAscan-SE	exon	6029	6115	.	-	.	ID=exon-CFSAN001082_RS40990-1;Parent=rna-CFSAN001082_RS40990;anticodon=(pos:complement(6079..6081));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS40990;product=tRNA-Leu
NZ_APAH01000348.1	RefSeq	gene	6127	6200	.	-	.	ID=gene-CFSAN001082_RS40995;Name=CFSAN001082_RS40995;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS40995;old_locus_tag=CFSAN001082_t17419
NZ_APAH01000348.1	tRNAscan-SE	tRNA	6127	6200	.	-	.	ID=rna-CFSAN001082_RS40995;Parent=gene-CFSAN001082_RS40995;anticodon=(pos:complement(6166..6168));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS40995;product=tRNA-Cys
NZ_APAH01000348.1	tRNAscan-SE	exon	6127	6200	.	-	.	ID=exon-CFSAN001082_RS40995-1;Parent=rna-CFSAN001082_RS40995;anticodon=(pos:complement(6166..6168));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS40995;product=tRNA-Cys
NZ_APAH01000348.1	RefSeq	gene	6253	6328	.	-	.	ID=gene-CFSAN001082_RS41000;Name=CFSAN001082_RS41000;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS41000;old_locus_tag=CFSAN001082_t17421
NZ_APAH01000348.1	tRNAscan-SE	tRNA	6253	6328	.	-	.	ID=rna-CFSAN001082_RS41000;Parent=gene-CFSAN001082_RS41000;anticodon=(pos:complement(6293..6295));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS41000;product=tRNA-Gly
NZ_APAH01000348.1	tRNAscan-SE	exon	6253	6328	.	-	.	ID=exon-CFSAN001082_RS41000-1;Parent=rna-CFSAN001082_RS41000;anticodon=(pos:complement(6293..6295));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS41000;product=tRNA-Gly
NZ_APAH01000348.1	RefSeq	gene	6480	7028	.	-	.	ID=gene-CFSAN001082_RS41005;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41005;old_locus_tag=CFSAN001082_17385
NZ_APAH01000348.1	Protein Homology	CDS	6480	7028	.	-	0	ID=cds-WP_001160192.1;Parent=gene-CFSAN001082_RS41005;Dbxref=GenBank:WP_001160192.1;Name=WP_001160192.1;gbkey=CDS;gene=pgsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460898.1;locus_tag=CFSAN001082_RS41005;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_001160192.1;transl_table=11
NZ_APAH01000348.1	RefSeq	gene	7085	8917	.	-	.	ID=gene-CFSAN001082_RS41010;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41010;old_locus_tag=CFSAN001082_17390
NZ_APAH01000348.1	Protein Homology	CDS	7085	8917	.	-	0	ID=cds-WP_023254656.1;Parent=gene-CFSAN001082_RS41010;Dbxref=GenBank:WP_023254656.1;Name=WP_023254656.1;Ontology_term=GO:0006289,GO:0009381,GO:0009380;gbkey=CDS;gene=uvrC;go_component=excinuclease repair complex|0009380||IEA;go_function=excinuclease ABC activity|0009381||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460899.1;locus_tag=CFSAN001082_RS41010;product=excinuclease ABC subunit UvrC;protein_id=WP_023254656.1;transl_table=11
NZ_APAH01000348.1	RefSeq	gene	8914	9570	.	-	.	ID=gene-CFSAN001082_RS41015;Name=uvrY;gbkey=Gene;gene=uvrY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41015;old_locus_tag=CFSAN001082_17395
NZ_APAH01000348.1	Protein Homology	CDS	8914	9570	.	-	0	ID=cds-WP_000611323.1;Parent=gene-CFSAN001082_RS41015;Dbxref=GenBank:WP_000611323.1;Name=WP_000611323.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=uvrY;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460900.1;locus_tag=CFSAN001082_RS41015;product=UvrY/SirA/GacA family response regulator transcription factor;protein_id=WP_000611323.1;transl_table=11
NZ_APAH01000348.1	RefSeq	gene	9882	10037	.	+	.	ID=gene-CFSAN001082_RS41020;Name=CFSAN001082_RS41020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41020;old_locus_tag=CFSAN001082_17400
NZ_APAH01000348.1	Protein Homology	CDS	9882	10037	.	+	0	ID=cds-WP_000546186.1;Parent=gene-CFSAN001082_RS41020;Dbxref=GenBank:WP_000546186.1;Name=WP_000546186.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448360.1;locus_tag=CFSAN001082_RS41020;product=hypothetical protein;protein_id=WP_000546186.1;transl_table=11
NZ_APAH01000348.1	RefSeq	gene	10034	10258	.	+	.	ID=gene-CFSAN001082_RS41025;Name=CFSAN001082_RS41025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41025;old_locus_tag=CFSAN001082_17405
NZ_APAH01000348.1	Protein Homology	CDS	10034	10258	.	+	0	ID=cds-WP_000106483.1;Parent=gene-CFSAN001082_RS41025;Dbxref=GenBank:WP_000106483.1;Name=WP_000106483.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460902.1;locus_tag=CFSAN001082_RS41025;product=DUF2594 family protein;protein_id=WP_000106483.1;transl_table=11
NZ_APAH01000348.1	RefSeq	gene	10325	11047	.	-	.	ID=gene-CFSAN001082_RS41030;Name=sdiA;gbkey=Gene;gene=sdiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41030;old_locus_tag=CFSAN001082_17410
NZ_APAH01000348.1	Protein Homology	CDS	10325	11047	.	-	0	ID=cds-WP_001157172.1;Parent=gene-CFSAN001082_RS41030;Dbxref=GenBank:WP_001157172.1;Name=WP_001157172.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=sdiA;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460903.1;locus_tag=CFSAN001082_RS41030;product=transcriptional regulator SdiA;protein_id=WP_001157172.1;transl_table=11
##sequence-region NZ_APAH01000349.1 1 1478
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000349.1	RefSeq	region	1	1478	.	+	.	ID=NZ_APAH01000349.1:1..1478;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000349.1	RefSeq	gene	1	140	.	+	.	ID=gene-CFSAN001082_RS41035;Name=CFSAN001082_RS41035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41035;old_locus_tag=CFSAN001082_17421;partial=true;start_range=.,1
NZ_APAH01000349.1	Protein Homology	CDS	1	140	.	+	2	ID=cds-WP_023254657.1;Parent=gene-CFSAN001082_RS41035;Dbxref=GenBank:WP_023254657.1;Name=WP_023254657.1;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012539895.1;locus_tag=CFSAN001082_RS41035;partial=true;product=integrase core domain-containing protein;protein_id=WP_023254657.1;start_range=.,1;transl_table=11
NZ_APAH01000349.1	RefSeq	gene	896	1393	.	+	.	ID=gene-CFSAN001082_RS41040;Name=CFSAN001082_RS41040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41040;old_locus_tag=CFSAN001082_17426
NZ_APAH01000349.1	Protein Homology	CDS	896	1393	.	+	0	ID=cds-WP_023254658.1;Parent=gene-CFSAN001082_RS41040;Dbxref=GenBank:WP_023254658.1;Name=WP_023254658.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000789648.1;locus_tag=CFSAN001082_RS41040;product=Saf-pilin pilus formation protein SafA;protein_id=WP_023254658.1;transl_table=11
##sequence-region NZ_APAH01000350.1 1 6104
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000350.1	RefSeq	region	1	6104	.	+	.	ID=NZ_APAH01000350.1:1..6104;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000350.1	RefSeq	gene	1	1069	.	+	.	ID=gene-CFSAN001082_RS41045;Name=fliB;gbkey=Gene;gene=fliB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41045;old_locus_tag=CFSAN001082_17431;partial=true;start_range=.,1
NZ_APAH01000350.1	Protein Homology	CDS	1	1069	.	+	1	ID=cds-WP_023254659.1;Parent=gene-CFSAN001082_RS41045;Dbxref=GenBank:WP_023254659.1;Name=WP_023254659.1;gbkey=CDS;gene=fliB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460911.1;locus_tag=CFSAN001082_RS41045;partial=true;product=flagellin lysine-N-methylase;protein_id=WP_023254659.1;start_range=.,1;transl_table=11
NZ_APAH01000350.1	RefSeq	gene	1266	1985	.	+	.	ID=gene-CFSAN001082_RS41050;Name=CFSAN001082_RS41050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41050;old_locus_tag=CFSAN001082_17436
NZ_APAH01000350.1	Protein Homology	CDS	1266	1985	.	+	0	ID=cds-WP_001087453.1;Parent=gene-CFSAN001082_RS41050;Dbxref=GenBank:WP_001087453.1;Name=WP_001087453.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003899,GO:0016987;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed 5'-3' RNA polymerase activity|0003899||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460909.1;locus_tag=CFSAN001082_RS41050;product=RNA polymerase sigma factor FliA;protein_id=WP_001087453.1;transl_table=11
NZ_APAH01000350.1	RefSeq	gene	2044	2595	.	+	.	ID=gene-CFSAN001082_RS41055;Name=fliZ;gbkey=Gene;gene=fliZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41055;old_locus_tag=CFSAN001082_17441
NZ_APAH01000350.1	Protein Homology	CDS	2044	2595	.	+	0	ID=cds-WP_020898906.1;Parent=gene-CFSAN001082_RS41055;Dbxref=GenBank:WP_020898906.1;Name=WP_020898906.1;gbkey=CDS;gene=fliZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460908.1;locus_tag=CFSAN001082_RS41055;product=flagella biosynthesis regulatory protein FliZ;protein_id=WP_020898906.1;transl_table=11
NZ_APAH01000350.1	RefSeq	gene	2742	3542	.	+	.	ID=gene-CFSAN001082_RS41060;Name=tcyJ;gbkey=Gene;gene=tcyJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41060;old_locus_tag=CFSAN001082_17446
NZ_APAH01000350.1	Protein Homology	CDS	2742	3542	.	+	0	ID=cds-WP_017441845.1;Parent=gene-CFSAN001082_RS41060;Dbxref=GenBank:WP_017441845.1;Name=WP_017441845.1;Ontology_term=GO:0015276,GO:0016020;gbkey=CDS;gene=tcyJ;go_component=membrane|0016020||IEA;go_function=ligand-gated monoatomic ion channel activity|0015276||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460907.1;locus_tag=CFSAN001082_RS41060;product=cystine ABC transporter substrate-binding protein;protein_id=WP_017441845.1;transl_table=11
NZ_APAH01000350.1	RefSeq	gene	3696	4682	.	+	.	ID=gene-CFSAN001082_RS41065;Name=dcyD;gbkey=Gene;gene=dcyD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41065;old_locus_tag=CFSAN001082_17451
NZ_APAH01000350.1	Protein Homology	CDS	3696	4682	.	+	0	ID=cds-WP_001128180.1;Parent=gene-CFSAN001082_RS41065;Dbxref=GenBank:WP_001128180.1;Name=WP_001128180.1;Ontology_term=GO:0019148;gbkey=CDS;gene=dcyD;go_function=D-cysteine desulfhydrase activity|0019148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460906.1;locus_tag=CFSAN001082_RS41065;product=D-cysteine desulfhydrase;protein_id=WP_001128180.1;transl_table=11
NZ_APAH01000350.1	RefSeq	gene	4703	5371	.	+	.	ID=gene-CFSAN001082_RS41070;Name=tcyL;gbkey=Gene;gene=tcyL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41070;old_locus_tag=CFSAN001082_17456
NZ_APAH01000350.1	Protein Homology	CDS	4703	5371	.	+	0	ID=cds-WP_001158238.1;Parent=gene-CFSAN001082_RS41070;Dbxref=GenBank:WP_001158238.1;Name=WP_001158238.1;gbkey=CDS;gene=tcyL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460905.1;locus_tag=CFSAN001082_RS41070;product=cystine ABC transporter permease;protein_id=WP_001158238.1;transl_table=11
NZ_APAH01000350.1	RefSeq	gene	5368	6104	.	+	.	ID=gene-CFSAN001082_RS41075;Name=tcyN;end_range=6104,.;gbkey=Gene;gene=tcyN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41075;old_locus_tag=CFSAN001082_17461;partial=true
NZ_APAH01000350.1	Protein Homology	CDS	5368	6104	.	+	0	ID=cds-WP_023254660.1;Parent=gene-CFSAN001082_RS41075;Dbxref=GenBank:WP_023254660.1;Name=WP_023254660.1;Ontology_term=GO:0003333,GO:0005524,GO:0015424;end_range=6104,.;gbkey=CDS;gene=tcyN;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460904.1;locus_tag=CFSAN001082_RS41075;partial=true;product=L-cystine ABC transporter ATP-binding protein TcyN;protein_id=WP_023254660.1;transl_table=11
##sequence-region NZ_APAH01000351.1 1 485
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000351.1	RefSeq	region	1	485	.	+	.	ID=NZ_APAH01000351.1:1..485;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000351.1	RefSeq	pseudogene	1	485	.	+	.	ID=gene-CFSAN001082_RS48575;Name=CFSAN001082_RS48575;end_range=485,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48575;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000351.1	GeneMarkS-2+	CDS	1	485	.	+	2	ID=cds-CFSAN001082_RS48575;Parent=gene-CFSAN001082_RS48575;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=485,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48575;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000352.1 1 21355
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000352.1	RefSeq	region	1	21355	.	+	.	ID=NZ_APAH01000352.1:1..21355;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000352.1	RefSeq	gene	1	1099	.	+	.	ID=gene-CFSAN001082_RS41080;Name=CFSAN001082_RS41080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41080;old_locus_tag=CFSAN001082_17466;partial=true;start_range=.,1
NZ_APAH01000352.1	Protein Homology	CDS	1	1099	.	+	1	ID=cds-WP_023254661.1;Parent=gene-CFSAN001082_RS41080;Dbxref=GenBank:WP_023254661.1;Name=WP_023254661.1;Ontology_term=GO:0015288,GO:0009279,GO:0016020;gbkey=CDS;go_component=cell outer membrane|0009279||IEA,membrane|0016020||IEA;go_function=porin activity|0015288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459504.1;locus_tag=CFSAN001082_RS41080;partial=true;product=porin;protein_id=WP_023254661.1;start_range=.,1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	1356	2186	.	+	.	ID=gene-CFSAN001082_RS41085;Name=CFSAN001082_RS41085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41085;old_locus_tag=CFSAN001082_17471
NZ_APAH01000352.1	Protein Homology	CDS	1356	2186	.	+	0	ID=cds-WP_000524311.1;Parent=gene-CFSAN001082_RS41085;Dbxref=GenBank:WP_000524311.1;Name=WP_000524311.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459505.1;locus_tag=CFSAN001082_RS41085;product=MetQ/NlpA family ABC transporter substrate-binding protein;protein_id=WP_000524311.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	2223	3239	.	+	.	ID=gene-CFSAN001082_RS41090;Name=sfbB;gbkey=Gene;gene=sfbB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41090;old_locus_tag=CFSAN001082_17476
NZ_APAH01000352.1	Protein Homology	CDS	2223	3239	.	+	0	ID=cds-WP_000569660.1;Parent=gene-CFSAN001082_RS41090;Dbxref=GenBank:WP_000569660.1;Name=WP_000569660.1;gbkey=CDS;gene=sfbB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459506.1;locus_tag=CFSAN001082_RS41090;product=virulence-associated ABC transporter ATP-binding protein SfbB;protein_id=WP_000569660.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	3232	3891	.	+	.	ID=gene-CFSAN001082_RS41095;Name=CFSAN001082_RS41095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41095;old_locus_tag=CFSAN001082_17481
NZ_APAH01000352.1	Protein Homology	CDS	3232	3891	.	+	0	ID=cds-WP_000342247.1;Parent=gene-CFSAN001082_RS41095;Dbxref=GenBank:WP_000342247.1;Name=WP_000342247.1;Ontology_term=GO:0048473,GO:0033232,GO:0042626;gbkey=CDS;go_function=ABC-type D-methionine transporter activity|0033232||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=D-methionine transmembrane transport|0048473||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459507.1;locus_tag=CFSAN001082_RS41095;product=methionine ABC transporter permease;protein_id=WP_000342247.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	3930	5024	.	-	.	ID=gene-CFSAN001082_RS41100;Name=mnmH;gbkey=Gene;gene=mnmH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41100;old_locus_tag=CFSAN001082_17486
NZ_APAH01000352.1	Protein Homology	CDS	3930	5024	.	-	0	ID=cds-WP_023254662.1;Parent=gene-CFSAN001082_RS41100;Dbxref=GenBank:WP_023254662.1;Name=WP_023254662.1;Ontology_term=GO:0002098,GO:0043828;gbkey=CDS;gene=mnmH;go_function=tRNA 2-selenouridine synthase activity|0043828||IEA;go_process=tRNA wobble uridine modification|0002098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459508.1;locus_tag=CFSAN001082_RS41100;product=tRNA 2-selenouridine(34) synthase MnmH;protein_id=WP_023254662.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	5094	6020	.	-	.	ID=gene-CFSAN001082_RS41105;Name=allS;gbkey=Gene;gene=allS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41105;old_locus_tag=CFSAN001082_17491
NZ_APAH01000352.1	Protein Homology	CDS	5094	6020	.	-	0	ID=cds-WP_000460169.1;Parent=gene-CFSAN001082_RS41105;Dbxref=GenBank:WP_000460169.1;Name=WP_000460169.1;gbkey=CDS;gene=allS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459509.1;locus_tag=CFSAN001082_RS41105;product=HTH-type transcriptional activator AllS;protein_id=WP_000460169.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	6247	6729	.	+	.	ID=gene-CFSAN001082_RS41110;Name=allA;gbkey=Gene;gene=allA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41110;old_locus_tag=CFSAN001082_17496
NZ_APAH01000352.1	Protein Homology	CDS	6247	6729	.	+	0	ID=cds-WP_000764659.1;Parent=gene-CFSAN001082_RS41110;Dbxref=GenBank:WP_000764659.1;Name=WP_000764659.1;gbkey=CDS;gene=allA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459510.1;locus_tag=CFSAN001082_RS41110;product=ureidoglycolate lyase;protein_id=WP_000764659.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	6808	7626	.	+	.	ID=gene-CFSAN001082_RS41115;Name=allR;gbkey=Gene;gene=allR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41115;old_locus_tag=CFSAN001082_17501
NZ_APAH01000352.1	Protein Homology	CDS	6808	7626	.	+	0	ID=cds-WP_000141265.1;Parent=gene-CFSAN001082_RS41115;Dbxref=GenBank:WP_000141265.1;Name=WP_000141265.1;gbkey=CDS;gene=allR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459511.1;locus_tag=CFSAN001082_RS41115;product=HTH-type transcriptional repressor AllR;protein_id=WP_000141265.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	7711	9492	.	+	.	ID=gene-CFSAN001082_RS41120;Name=gcl;gbkey=Gene;gene=gcl;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41120;old_locus_tag=CFSAN001082_17506
NZ_APAH01000352.1	Protein Homology	CDS	7711	9492	.	+	0	ID=cds-WP_001096868.1;Parent=gene-CFSAN001082_RS41120;Dbxref=GenBank:WP_001096868.1;Name=WP_001096868.1;Ontology_term=GO:0009436,GO:0009028;gbkey=CDS;gene=gcl;go_function=tartronate-semialdehyde synthase activity|0009028||IEA;go_process=glyoxylate catabolic process|0009436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459512.1;locus_tag=CFSAN001082_RS41120;product=glyoxylate carboligase;protein_id=WP_001096868.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	9505	10281	.	+	.	ID=gene-CFSAN001082_RS41125;Name=gip;gbkey=Gene;gene=gip;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41125;old_locus_tag=CFSAN001082_17511
NZ_APAH01000352.1	Protein Homology	CDS	9505	10281	.	+	0	ID=cds-WP_000943595.1;Parent=gene-CFSAN001082_RS41125;Dbxref=GenBank:WP_000943595.1;Name=WP_000943595.1;gbkey=CDS;gene=gip;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459513.1;locus_tag=CFSAN001082_RS41125;product=hydroxypyruvate isomerase Gip;protein_id=WP_000943595.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	10382	11260	.	+	.	ID=gene-CFSAN001082_RS41130;Name=glxR;gbkey=Gene;gene=glxR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41130;old_locus_tag=CFSAN001082_17516
NZ_APAH01000352.1	Protein Homology	CDS	10382	11260	.	+	0	ID=cds-WP_000765815.1;Parent=gene-CFSAN001082_RS41130;Dbxref=GenBank:WP_000765815.1;Name=WP_000765815.1;Ontology_term=GO:0046487,GO:0008679,GO:0051287;gbkey=CDS;gene=glxR;go_function=2-hydroxy-3-oxopropionate reductase activity|0008679||IEA,NAD binding|0051287||IEA;go_process=glyoxylate metabolic process|0046487||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459514.1;locus_tag=CFSAN001082_RS41130;product=2-hydroxy-3-oxopropionate reductase;protein_id=WP_000765815.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	11326	12573	.	+	.	ID=gene-CFSAN001082_RS41135;Name=CFSAN001082_RS41135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41135;old_locus_tag=CFSAN001082_17521
NZ_APAH01000352.1	Protein Homology	CDS	11326	12573	.	+	0	ID=cds-WP_000005070.1;Parent=gene-CFSAN001082_RS41135;Dbxref=GenBank:WP_000005070.1;Name=WP_000005070.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459515.1;locus_tag=CFSAN001082_RS41135;product=MFS transporter;protein_id=WP_000005070.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	12669	14123	.	+	.	ID=gene-CFSAN001082_RS41140;Name=CFSAN001082_RS41140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41140;old_locus_tag=CFSAN001082_17526
NZ_APAH01000352.1	Protein Homology	CDS	12669	14123	.	+	0	ID=cds-WP_000401060.1;Parent=gene-CFSAN001082_RS41140;Dbxref=GenBank:WP_000401060.1;Name=WP_000401060.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415044.4;locus_tag=CFSAN001082_RS41140;product=allantoin transporter;protein_id=WP_000401060.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	14202	15563	.	+	.	ID=gene-CFSAN001082_RS41145;Name=allB;gbkey=Gene;gene=allB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41145;old_locus_tag=CFSAN001082_17531
NZ_APAH01000352.1	Protein Homology	CDS	14202	15563	.	+	0	ID=cds-WP_000006865.1;Parent=gene-CFSAN001082_RS41145;Dbxref=GenBank:WP_000006865.1;Name=WP_000006865.1;Ontology_term=GO:0000256,GO:0004038;gbkey=CDS;gene=allB;go_function=allantoinase activity|0004038||IEA;go_process=allantoin catabolic process|0000256||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459518.1;locus_tag=CFSAN001082_RS41145;product=allantoinase AllB;protein_id=WP_000006865.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	15622	16920	.	+	.	ID=gene-CFSAN001082_RS41150;Name=CFSAN001082_RS41150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41150;old_locus_tag=CFSAN001082_17536
NZ_APAH01000352.1	Protein Homology	CDS	15622	16920	.	+	0	ID=cds-WP_023254663.1;Parent=gene-CFSAN001082_RS41150;Dbxref=GenBank:WP_023254663.1;Name=WP_023254663.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459519.1;locus_tag=CFSAN001082_RS41150;product=uracil/xanthine transporter;protein_id=WP_023254663.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	16943	18091	.	+	.	ID=gene-CFSAN001082_RS41155;Name=glxK;gbkey=Gene;gene=glxK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41155;old_locus_tag=CFSAN001082_17541
NZ_APAH01000352.1	Protein Homology	CDS	16943	18091	.	+	0	ID=cds-WP_023214900.1;Parent=gene-CFSAN001082_RS41155;Dbxref=GenBank:WP_023214900.1;Name=WP_023214900.1;gbkey=CDS;gene=glxK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459520.1;locus_tag=CFSAN001082_RS41155;product=glycerate 3-kinase;protein_id=WP_023214900.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	18170	18955	.	-	.	ID=gene-CFSAN001082_RS41160;Name=allE;gbkey=Gene;gene=allE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41160;old_locus_tag=CFSAN001082_17546
NZ_APAH01000352.1	Protein Homology	CDS	18170	18955	.	-	0	ID=cds-WP_000540986.1;Parent=gene-CFSAN001082_RS41160;Dbxref=GenBank:WP_000540986.1;Name=WP_000540986.1;Ontology_term=GO:0010136,GO:0071522;gbkey=CDS;gene=allE;go_function=ureidoglycine aminohydrolase activity|0071522||IEA;go_process=ureide catabolic process|0010136||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459521.1;locus_tag=CFSAN001082_RS41160;product=(S)-ureidoglycine aminohydrolase;protein_id=WP_000540986.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	18966	20201	.	-	.	ID=gene-CFSAN001082_RS41165;Name=allC;gbkey=Gene;gene=allC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41165;old_locus_tag=CFSAN001082_17551
NZ_APAH01000352.1	Protein Homology	CDS	18966	20201	.	-	0	ID=cds-WP_000589759.1;Parent=gene-CFSAN001082_RS41165;Dbxref=GenBank:WP_000589759.1;Name=WP_000589759.1;Ontology_term=GO:0000256,GO:0009442,GO:0047652;gbkey=CDS;gene=allC;go_function=allantoate deiminase activity|0047652||IEA;go_process=allantoin catabolic process|0000256||IEA,allantoin assimilation pathway|0009442||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459522.1;locus_tag=CFSAN001082_RS41165;product=allantoate deiminase;protein_id=WP_000589759.1;transl_table=11
NZ_APAH01000352.1	RefSeq	gene	20223	21272	.	-	.	ID=gene-CFSAN001082_RS41170;Name=allD;gbkey=Gene;gene=allD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41170;old_locus_tag=CFSAN001082_17556
NZ_APAH01000352.1	Protein Homology	CDS	20223	21272	.	-	0	ID=cds-WP_000703943.1;Parent=gene-CFSAN001082_RS41170;Dbxref=GenBank:WP_000703943.1;Name=WP_000703943.1;gbkey=CDS;gene=allD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459523.1;locus_tag=CFSAN001082_RS41170;product=ureidoglycolate dehydrogenase AllD;protein_id=WP_000703943.1;transl_table=11
##sequence-region NZ_APAH01000353.1 1 8508
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000353.1	RefSeq	region	1	8508	.	+	.	ID=NZ_APAH01000353.1:1..8508;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000353.1	RefSeq	gene	184	1026	.	-	.	ID=gene-CFSAN001082_RS41175;Name=sseA;gbkey=Gene;gene=sseA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41175;old_locus_tag=CFSAN001082_17561
NZ_APAH01000353.1	Protein Homology	CDS	184	1026	.	-	0	ID=cds-WP_000205241.1;Parent=gene-CFSAN001082_RS41175;Dbxref=GenBank:WP_000205241.1;Name=WP_000205241.1;Ontology_term=GO:0004792;gbkey=CDS;gene=sseA;go_function=thiosulfate-cyanide sulfurtransferase activity|0004792||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461468.1;locus_tag=CFSAN001082_RS41175;product=3-mercaptopyruvate sulfurtransferase;protein_id=WP_000205241.1;transl_table=11
NZ_APAH01000353.1	RefSeq	gene	1235	6169	.	+	.	ID=gene-CFSAN001082_RS41180;Name=CFSAN001082_RS41180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41180;old_locus_tag=CFSAN001082_17566
NZ_APAH01000353.1	Protein Homology	CDS	1235	6169	.	+	0	ID=cds-WP_023254664.1;Parent=gene-CFSAN001082_RS41180;Dbxref=GenBank:WP_023254664.1;Name=WP_023254664.1;Ontology_term=GO:0010951,GO:0004866;gbkey=CDS;go_function=endopeptidase inhibitor activity|0004866||IEA;go_process=negative regulation of endopeptidase activity|0010951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461467.1;locus_tag=CFSAN001082_RS41180;product=alpha-2-macroglobulin family protein;protein_id=WP_023254664.1;transl_table=11
NZ_APAH01000353.1	RefSeq	gene	6170	8485	.	+	.	ID=gene-CFSAN001082_RS41185;Name=pbpC;gbkey=Gene;gene=pbpC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41185;old_locus_tag=CFSAN001082_17571
NZ_APAH01000353.1	Protein Homology	CDS	6170	8485	.	+	0	ID=cds-WP_023254665.1;Parent=gene-CFSAN001082_RS41185;Dbxref=GenBank:WP_023254665.1;Name=WP_023254665.1;Note=penicillin-binding protein 1C;Ontology_term=GO:0009252,GO:0008658,GO:0008955;gbkey=CDS;gene=pbpC;go_function=penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461466.1;locus_tag=CFSAN001082_RS41185;product=peptidoglycan glycosyltransferase PbpC;protein_id=WP_023254665.1;transl_table=11
##sequence-region NZ_APAH01000354.1 1 265
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000354.1	RefSeq	region	1	265	.	+	.	ID=NZ_APAH01000354.1:1..265;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000354.1	RefSeq	gene	1	265	.	+	.	ID=gene-CFSAN001082_RS0123815;Name=CFSAN001082_RS0123815;end_range=265,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123815;old_locus_tag=CFSAN001082_17576;partial=true;start_range=.,1
NZ_APAH01000354.1	Protein Homology	CDS	1	265	.	+	1	ID=cds-WP_023254666.1;Parent=gene-CFSAN001082_RS0123815;Dbxref=GenBank:WP_023254666.1;Name=WP_023254666.1;end_range=265,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016504929.1;locus_tag=CFSAN001082_RS0123815;partial=true;product=DUF943 family protein;protein_id=WP_023254666.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000355.1 1 901
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000355.1	RefSeq	region	1	901	.	+	.	ID=NZ_APAH01000355.1:1..901;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000355.1	RefSeq	gene	1	90	.	+	.	ID=gene-CFSAN001082_RS0123820;Name=CFSAN001082_RS0123820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123820;partial=true;start_range=.,1
NZ_APAH01000355.1	Protein Homology	CDS	1	90	.	+	0	ID=cds-WP_031613025.1;Parent=gene-CFSAN001082_RS0123820;Dbxref=GenBank:WP_031613025.1;Name=WP_031613025.1;Ontology_term=GO:0030153,GO:0015643;gbkey=CDS;go_function=toxic substance binding|0015643||IEA;go_process=bacteriocin immunity|0030153||IEA;inference=COORDINATES: protein motif:HMM:NF013485.6;locus_tag=CFSAN001082_RS0123820;partial=true;product=bacteriocin immunity protein;protein_id=WP_031613025.1;start_range=.,1;transl_table=11
NZ_APAH01000355.1	RefSeq	gene	493	901	.	+	.	ID=gene-CFSAN001082_RS41190;Name=CFSAN001082_RS41190;end_range=901,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41190;old_locus_tag=CFSAN001082_17581;partial=true
NZ_APAH01000355.1	Protein Homology	CDS	493	901	.	+	0	ID=cds-WP_023254667.1;Parent=gene-CFSAN001082_RS41190;Dbxref=GenBank:WP_023254667.1;Name=WP_023254667.1;end_range=901,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001151807.1;locus_tag=CFSAN001082_RS41190;partial=true;product=hypothetical protein;protein_id=WP_023254667.1;transl_table=11
##sequence-region NZ_APAH01000356.1 1 2733
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000356.1	RefSeq	region	1	2733	.	+	.	ID=NZ_APAH01000356.1:1..2733;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000356.1	RefSeq	gene	1	164	.	+	.	ID=gene-CFSAN001082_RS47385;Name=CFSAN001082_RS47385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47385;old_locus_tag=CFSAN001082_17586;partial=true;start_range=.,1
NZ_APAH01000356.1	Protein Homology	CDS	1	164	.	+	2	ID=cds-WP_023254668.1;Parent=gene-CFSAN001082_RS47385;Dbxref=GenBank:WP_023254668.1;Name=WP_023254668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461192.1;locus_tag=CFSAN001082_RS47385;partial=true;product=cytochrome c-type biogenesis CcmF C-terminal domain-containing protein;protein_id=WP_023254668.1;start_range=.,1;transl_table=11
NZ_APAH01000356.1	RefSeq	gene	161	718	.	+	.	ID=gene-CFSAN001082_RS41195;Name=dsbE;gbkey=Gene;gene=dsbE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41195;old_locus_tag=CFSAN001082_17591
NZ_APAH01000356.1	Protein Homology	CDS	161	718	.	+	0	ID=cds-WP_000828285.1-2;Parent=gene-CFSAN001082_RS41195;Dbxref=GenBank:WP_000828285.1;Name=WP_000828285.1;gbkey=CDS;gene=dsbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461191.1;locus_tag=CFSAN001082_RS41195;product=thiol:disulfide interchange protein DsbE;protein_id=WP_000828285.1;transl_table=11
NZ_APAH01000356.1	RefSeq	gene	715	1758	.	+	.	ID=gene-CFSAN001082_RS41200;Name=CFSAN001082_RS41200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41200;old_locus_tag=CFSAN001082_17596
NZ_APAH01000356.1	Protein Homology	CDS	715	1758	.	+	0	ID=cds-WP_023254669.1;Parent=gene-CFSAN001082_RS41200;Dbxref=GenBank:WP_023254669.1;Name=WP_023254669.1;Ontology_term=GO:0017004,GO:0015035,GO:0046872,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=protein-disulfide reductase activity|0015035||IEA,metal ion binding|0046872||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462712.1;locus_tag=CFSAN001082_RS41200;product=cytochrome c-type biogenesis protein CcmH;protein_id=WP_023254669.1;transl_table=11
NZ_APAH01000356.1	RefSeq	gene	1802	2449	.	-	.	ID=gene-CFSAN001082_RS41205;Name=narP;gbkey=Gene;gene=narP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41205;old_locus_tag=CFSAN001082_17601
NZ_APAH01000356.1	Protein Homology	CDS	1802	2449	.	-	0	ID=cds-WP_001115500.1;Parent=gene-CFSAN001082_RS41205;Dbxref=GenBank:WP_001115500.1;Name=WP_001115500.1;gbkey=CDS;gene=narP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461189.1;locus_tag=CFSAN001082_RS41205;product=nitrate/nitrite response regulator protein NarP;protein_id=WP_001115500.1;transl_table=11
##sequence-region NZ_APAH01000357.1 1 5152
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000357.1	RefSeq	region	1	5152	.	+	.	ID=NZ_APAH01000357.1:1..5152;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000357.1	RefSeq	gene	297	1241	.	+	.	ID=gene-CFSAN001082_RS41210;Name=leuO;gbkey=Gene;gene=leuO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41210;old_locus_tag=CFSAN001082_17606
NZ_APAH01000357.1	Protein Homology	CDS	297	1241	.	+	0	ID=cds-WP_001115420.1;Parent=gene-CFSAN001082_RS41210;Dbxref=GenBank:WP_001115420.1;Name=WP_001115420.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=leuO;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459120.1;locus_tag=CFSAN001082_RS41210;product=transcriptional regulator LeuO;protein_id=WP_001115420.1;transl_table=11
NZ_APAH01000357.1	RefSeq	gene	1563	3287	.	+	.	ID=gene-CFSAN001082_RS41215;Name=ilvI;gbkey=Gene;gene=ilvI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41215;old_locus_tag=CFSAN001082_17611
NZ_APAH01000357.1	Protein Homology	CDS	1563	3287	.	+	0	ID=cds-WP_001748923.1;Parent=gene-CFSAN001082_RS41215;Dbxref=GenBank:WP_001748923.1;Name=WP_001748923.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvI;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020079613.1;locus_tag=CFSAN001082_RS41215;product=acetolactate synthase 3 large subunit;protein_id=WP_001748923.1;transl_table=11
NZ_APAH01000357.1	RefSeq	gene	3290	3781	.	+	.	ID=gene-CFSAN001082_RS41220;Name=ilvN;gbkey=Gene;gene=ilvN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41220;old_locus_tag=CFSAN001082_17616
NZ_APAH01000357.1	Protein Homology	CDS	3290	3781	.	+	0	ID=cds-WP_001563086.1;Parent=gene-CFSAN001082_RS41220;Dbxref=GenBank:WP_001563086.1;Name=WP_001563086.1;Ontology_term=GO:0009082,GO:1990610;gbkey=CDS;gene=ilvN;go_function=acetolactate synthase regulator activity|1990610||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001563086.1;locus_tag=CFSAN001082_RS41220;product=acetolactate synthase small subunit;protein_id=WP_001563086.1;transl_table=11
NZ_APAH01000357.1	RefSeq	gene	4065	5069	.	+	.	ID=gene-CFSAN001082_RS41225;Name=cra;gbkey=Gene;gene=cra;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41225;old_locus_tag=CFSAN001082_17621
NZ_APAH01000357.1	Protein Homology	CDS	4065	5069	.	+	0	ID=cds-WP_000762406.1;Parent=gene-CFSAN001082_RS41225;Dbxref=GenBank:WP_000762406.1;Name=WP_000762406.1;Ontology_term=GO:0006355,GO:0009750,GO:0003677;gbkey=CDS;gene=cra;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,response to fructose|0009750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459123.1;locus_tag=CFSAN001082_RS41225;product=catabolite repressor/activator;protein_id=WP_000762406.1;transl_table=11
##sequence-region NZ_APAH01000358.1 1 7012
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000358.1	RefSeq	region	1	7012	.	+	.	ID=NZ_APAH01000358.1:1..7012;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000358.1	RefSeq	gene	108	3851	.	+	.	ID=gene-CFSAN001082_RS41230;Name=CFSAN001082_RS41230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41230;old_locus_tag=CFSAN001082_17626
NZ_APAH01000358.1	Protein Homology	CDS	108	3851	.	+	0	ID=cds-WP_000032890.1;Parent=gene-CFSAN001082_RS41230;Dbxref=GenBank:WP_000032890.1;Name=WP_000032890.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460720.1;locus_tag=CFSAN001082_RS41230;product=nitrate reductase subunit alpha;protein_id=WP_000032890.1;transl_table=11
NZ_APAH01000358.1	RefSeq	gene	3848	5383	.	+	.	ID=gene-CFSAN001082_RS41235;Name=narH;gbkey=Gene;gene=narH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41235;old_locus_tag=CFSAN001082_17631
NZ_APAH01000358.1	Protein Homology	CDS	3848	5383	.	+	0	ID=cds-WP_000702629.1;Parent=gene-CFSAN001082_RS41235;Dbxref=GenBank:WP_000702629.1;Name=WP_000702629.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;gene=narH;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460719.1;locus_tag=CFSAN001082_RS41235;product=nitrate reductase subunit beta;protein_id=WP_000702629.1;transl_table=11
NZ_APAH01000358.1	RefSeq	gene	5380	6090	.	+	.	ID=gene-CFSAN001082_RS41240;Name=narJ;gbkey=Gene;gene=narJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41240;old_locus_tag=CFSAN001082_17636
NZ_APAH01000358.1	Protein Homology	CDS	5380	6090	.	+	0	ID=cds-WP_023224256.1;Parent=gene-CFSAN001082_RS41240;Dbxref=GenBank:WP_023224256.1;Name=WP_023224256.1;Ontology_term=GO:0051131,GO:0051082;gbkey=CDS;gene=narJ;go_function=unfolded protein binding|0051082||IEA;go_process=chaperone-mediated protein complex assembly|0051131||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460718.1;locus_tag=CFSAN001082_RS41240;product=nitrate reductase molybdenum cofactor assembly chaperone;protein_id=WP_023224256.1;transl_table=11
NZ_APAH01000358.1	RefSeq	gene	6090	6767	.	+	.	ID=gene-CFSAN001082_RS41245;Name=narI;gbkey=Gene;gene=narI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41245;old_locus_tag=CFSAN001082_17641
NZ_APAH01000358.1	Protein Homology	CDS	6090	6767	.	+	0	ID=cds-WP_000545594.1;Parent=gene-CFSAN001082_RS41245;Dbxref=GenBank:WP_000545594.1;Name=WP_000545594.1;Ontology_term=GO:0019645,GO:0008940,GO:0009325;gbkey=CDS;gene=narI;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460717.1;locus_tag=CFSAN001082_RS41245;product=respiratory nitrate reductase subunit gamma;protein_id=WP_000545594.1;transl_table=11
NZ_APAH01000358.1	RefSeq	gene	6809	7012	.	-	.	ID=gene-CFSAN001082_RS48980;Name=CFSAN001082_RS48980;end_range=7012,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48980;old_locus_tag=CFSAN001082_17646;partial=true
NZ_APAH01000358.1	GeneMarkS-2+	CDS	6809	7012	.	-	0	ID=cds-WP_023254670.1;Parent=gene-CFSAN001082_RS48980;Dbxref=GenBank:WP_023254670.1;Name=WP_023254670.1;end_range=7012,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48980;partial=true;product=hypothetical protein;protein_id=WP_023254670.1;transl_table=11
##sequence-region NZ_APAH01000359.1 1 230
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000359.1	RefSeq	region	1	230	.	+	.	ID=NZ_APAH01000359.1:1..230;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000360.1 1 9895
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000360.1	RefSeq	region	1	9895	.	+	.	ID=NZ_APAH01000360.1:1..9895;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000360.1	RefSeq	gene	1	284	.	-	.	ID=gene-CFSAN001082_RS41250;Name=CFSAN001082_RS41250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41250;old_locus_tag=CFSAN001082_17656;partial=true;start_range=.,1
NZ_APAH01000360.1	Protein Homology	CDS	1	284	.	-	0	ID=cds-WP_023254672.1;Parent=gene-CFSAN001082_RS41250;Dbxref=GenBank:WP_023254672.1;Name=WP_023254672.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460278.1;locus_tag=CFSAN001082_RS41250;partial=true;product=PTS sugar transporter subunit IIB;protein_id=WP_023254672.1;start_range=.,1;transl_table=11
NZ_APAH01000360.1	RefSeq	gene	585	926	.	-	.	ID=gene-CFSAN001082_RS41255;Name=osmE;gbkey=Gene;gene=osmE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41255;old_locus_tag=CFSAN001082_17661
NZ_APAH01000360.1	Protein Homology	CDS	585	926	.	-	0	ID=cds-WP_001039301.1;Parent=gene-CFSAN001082_RS41255;Dbxref=GenBank:WP_001039301.1;Name=WP_001039301.1;Ontology_term=GO:0019867;gbkey=CDS;gene=osmE;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460277.1;locus_tag=CFSAN001082_RS41255;product=osmotically-inducible lipoprotein OsmE;protein_id=WP_001039301.1;transl_table=11
NZ_APAH01000360.1	RefSeq	gene	1145	1972	.	+	.	ID=gene-CFSAN001082_RS41260;Name=nadE;gbkey=Gene;gene=nadE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41260;old_locus_tag=CFSAN001082_17666
NZ_APAH01000360.1	Protein Homology	CDS	1145	1972	.	+	0	ID=cds-WP_000174982.1;Parent=gene-CFSAN001082_RS41260;Dbxref=GenBank:WP_000174982.1;Name=WP_000174982.1;Ontology_term=GO:0009435,GO:0003952,GO:0004359,GO:0008795;gbkey=CDS;gene=nadE;go_function=NAD+ synthase (glutamine-hydrolyzing) activity|0003952||IEA,glutaminase activity|0004359||IEA,NAD+ synthase activity|0008795||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460276.1;locus_tag=CFSAN001082_RS41260;product=ammonia-dependent NAD(+) synthetase;protein_id=WP_000174982.1;transl_table=11
NZ_APAH01000360.1	RefSeq	gene	2093	2974	.	+	.	ID=gene-CFSAN001082_RS41265;Name=cho;gbkey=Gene;gene=cho;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41265;old_locus_tag=CFSAN001082_17671
NZ_APAH01000360.1	Protein Homology	CDS	2093	2974	.	+	0	ID=cds-WP_023242011.1;Parent=gene-CFSAN001082_RS41265;Dbxref=GenBank:WP_023242011.1;Name=WP_023242011.1;gbkey=CDS;gene=cho;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011233065.1;locus_tag=CFSAN001082_RS41265;product=excinuclease Cho;protein_id=WP_023242011.1;transl_table=11
NZ_APAH01000360.1	RefSeq	gene	3049	3534	.	-	.	ID=gene-CFSAN001082_RS41270;Name=spy;gbkey=Gene;gene=spy;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41270;old_locus_tag=CFSAN001082_17676
NZ_APAH01000360.1	Protein Homology	CDS	3049	3534	.	-	0	ID=cds-WP_001229001.1;Parent=gene-CFSAN001082_RS41270;Dbxref=GenBank:WP_001229001.1;Name=WP_001229001.1;Ontology_term=GO:0042597;gbkey=CDS;gene=spy;go_component=periplasmic space|0042597||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460274.1;locus_tag=CFSAN001082_RS41270;product=ATP-independent periplasmic protein-refolding chaperone Spy;protein_id=WP_001229001.1;transl_table=11
NZ_APAH01000360.1	RefSeq	gene	3870	4838	.	-	.	ID=gene-CFSAN001082_RS41275;Name=astE;gbkey=Gene;gene=astE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41275;old_locus_tag=CFSAN001082_17681
NZ_APAH01000360.1	Protein Homology	CDS	3870	4838	.	-	0	ID=cds-WP_023254673.1;Parent=gene-CFSAN001082_RS41275;Dbxref=GenBank:WP_023254673.1;Name=WP_023254673.1;Ontology_term=GO:0006527,GO:0008270,GO:0009017;gbkey=CDS;gene=astE;go_function=zinc ion binding|0008270||IEA,succinylglutamate desuccinylase activity|0009017||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460273.1;locus_tag=CFSAN001082_RS41275;product=succinylglutamate desuccinylase;protein_id=WP_023254673.1;transl_table=11
NZ_APAH01000360.1	RefSeq	gene	4831	6174	.	-	.	ID=gene-CFSAN001082_RS41280;Name=astB;gbkey=Gene;gene=astB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41280;old_locus_tag=CFSAN001082_17686
NZ_APAH01000360.1	Protein Homology	CDS	4831	6174	.	-	0	ID=cds-WP_023254674.1;Parent=gene-CFSAN001082_RS41280;Dbxref=GenBank:WP_023254674.1;Name=WP_023254674.1;Ontology_term=GO:0006527,GO:0009015;gbkey=CDS;gene=astB;go_function=N-succinylarginine dihydrolase activity|0009015||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460272.1;locus_tag=CFSAN001082_RS41280;product=N-succinylarginine dihydrolase;protein_id=WP_023254674.1;transl_table=11
NZ_APAH01000360.1	RefSeq	gene	6171	7649	.	-	.	ID=gene-CFSAN001082_RS41285;Name=astD;gbkey=Gene;gene=astD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41285;old_locus_tag=CFSAN001082_17691
NZ_APAH01000360.1	Protein Homology	CDS	6171	7649	.	-	0	ID=cds-WP_023254675.1;Parent=gene-CFSAN001082_RS41285;Dbxref=GenBank:WP_023254675.1;Name=WP_023254675.1;Ontology_term=GO:0006527,GO:0043824;gbkey=CDS;gene=astD;go_function=succinylglutamate-semialdehyde dehydrogenase activity|0043824||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460271.1;locus_tag=CFSAN001082_RS41285;product=succinylglutamate-semialdehyde dehydrogenase;protein_id=WP_023254675.1;transl_table=11
NZ_APAH01000360.1	RefSeq	gene	7646	8680	.	-	.	ID=gene-CFSAN001082_RS41290;Name=astA;gbkey=Gene;gene=astA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41290;old_locus_tag=CFSAN001082_17696
NZ_APAH01000360.1	Protein Homology	CDS	7646	8680	.	-	0	ID=cds-WP_001263889.1;Parent=gene-CFSAN001082_RS41290;Dbxref=GenBank:WP_001263889.1;Name=WP_001263889.1;Ontology_term=GO:0006527,GO:0008791;gbkey=CDS;gene=astA;go_function=arginine N-succinyltransferase activity|0008791||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460270.1;locus_tag=CFSAN001082_RS41290;product=arginine N-succinyltransferase;protein_id=WP_001263889.1;transl_table=11
NZ_APAH01000360.1	RefSeq	gene	8671	9895	.	-	.	ID=gene-CFSAN001082_RS41295;Name=CFSAN001082_RS41295;end_range=9895,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41295;old_locus_tag=CFSAN001082_17701;partial=true
NZ_APAH01000360.1	Protein Homology	CDS	8671	9895	.	-	1	ID=cds-WP_023254676.1;Parent=gene-CFSAN001082_RS41295;Dbxref=GenBank:WP_023254676.1;Name=WP_023254676.1;end_range=9895,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460269.1;locus_tag=CFSAN001082_RS41295;partial=true;product=aspartate aminotransferase family protein;protein_id=WP_023254676.1;transl_table=11
##sequence-region NZ_APAH01000361.1 1 273
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000361.1	RefSeq	region	1	273	.	+	.	ID=NZ_APAH01000361.1:1..273;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000361.1	RefSeq	gene	115	273	.	+	.	ID=gene-CFSAN001082_RS46325;Name=CFSAN001082_RS46325;end_range=273,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46325;old_locus_tag=CFSAN001082_17706;partial=true
NZ_APAH01000361.1	Protein Homology	CDS	115	273	.	+	0	ID=cds-WP_023254677.1;Parent=gene-CFSAN001082_RS46325;Dbxref=GenBank:WP_023254677.1;Name=WP_023254677.1;Ontology_term=GO:0006950;end_range=273,.;gbkey=CDS;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460687.1;locus_tag=CFSAN001082_RS46325;partial=true;product=general stress protein;protein_id=WP_023254677.1;transl_table=11
##sequence-region NZ_APAH01000362.1 1 789
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000362.1	RefSeq	region	1	789	.	+	.	ID=NZ_APAH01000362.1:1..789;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000362.1	RefSeq	pseudogene	20	112	.	-	.	ID=gene-CFSAN001082_RS47400;Name=CFSAN001082_RS47400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47400;partial=true;pseudo=true;start_range=.,20
NZ_APAH01000362.1	Protein Homology	CDS	20	112	.	-	0	ID=cds-CFSAN001082_RS47400;Parent=gene-CFSAN001082_RS47400;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010340155.1;locus_tag=CFSAN001082_RS47400;partial=true;product=integrase;pseudo=true;start_range=.,20;transl_table=11
NZ_APAH01000362.1	RefSeq	pseudogene	238	789	.	-	.	ID=gene-CFSAN001082_RS41300;Name=CFSAN001082_RS41300;end_range=789,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS41300;old_locus_tag=CFSAN001082_17711;partial=true;pseudo=true
NZ_APAH01000362.1	Protein Homology	CDS	238	789	.	-	0	ID=cds-CFSAN001082_RS41300;Parent=gene-CFSAN001082_RS41300;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=789,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441380.1;locus_tag=CFSAN001082_RS41300;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000363.1 1 19144
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000363.1	RefSeq	region	1	19144	.	+	.	ID=NZ_APAH01000363.1:1..19144;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000363.1	RefSeq	gene	383	2422	.	-	.	ID=gene-CFSAN001082_RS41305;Name=fhuB;gbkey=Gene;gene=fhuB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41305;old_locus_tag=CFSAN001082_17716
NZ_APAH01000363.1	Protein Homology	CDS	383	2422	.	-	0	ID=cds-WP_139759104.1;Parent=gene-CFSAN001082_RS41305;Dbxref=GenBank:WP_139759104.1;Name=WP_139759104.1;Ontology_term=GO:0022857;gbkey=CDS;gene=fhuB;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016504759.1;locus_tag=CFSAN001082_RS41305;product=Fe(3+)-hydroxamate ABC transporter permease FhuB;protein_id=WP_139759104.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	2437	3327	.	-	.	ID=gene-CFSAN001082_RS41310;Name=fhuD;gbkey=Gene;gene=fhuD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41310;old_locus_tag=CFSAN001082_17721
NZ_APAH01000363.1	Protein Homology	CDS	2437	3327	.	-	0	ID=cds-WP_001205359.1;Parent=gene-CFSAN001082_RS41310;Dbxref=GenBank:WP_001205359.1;Name=WP_001205359.1;gbkey=CDS;gene=fhuD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459198.1;locus_tag=CFSAN001082_RS41310;product=Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD;protein_id=WP_001205359.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	3327	4124	.	-	.	ID=gene-CFSAN001082_RS41315;Name=fhuC;gbkey=Gene;gene=fhuC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41315;old_locus_tag=CFSAN001082_17726
NZ_APAH01000363.1	Protein Homology	CDS	3327	4124	.	-	0	ID=cds-WP_023254680.1;Parent=gene-CFSAN001082_RS41315;Dbxref=GenBank:WP_023254680.1;Name=WP_023254680.1;Ontology_term=GO:0005524;gbkey=CDS;gene=fhuC;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459197.1;locus_tag=CFSAN001082_RS41315;product=Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;protein_id=WP_023254680.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	4173	6362	.	-	.	ID=gene-CFSAN001082_RS41320;Name=fhuA;gbkey=Gene;gene=fhuA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41320;old_locus_tag=CFSAN001082_17731
NZ_APAH01000363.1	Protein Homology	CDS	4173	6362	.	-	0	ID=cds-WP_023254681.1;Parent=gene-CFSAN001082_RS41320;Dbxref=GenBank:WP_023254681.1;Name=WP_023254681.1;Ontology_term=GO:0015891,GO:0015344,GO:0038023,GO:0009279;gbkey=CDS;gene=fhuA;go_component=cell outer membrane|0009279||IEA;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA,signaling receptor activity|0038023||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459196.1;locus_tag=CFSAN001082_RS41320;product=ferrichrome porin FhuA;protein_id=WP_023254681.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	6655	9177	.	-	.	ID=gene-CFSAN001082_RS41325;Name=mrcB;gbkey=Gene;gene=mrcB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41325;old_locus_tag=CFSAN001082_17736
NZ_APAH01000363.1	Protein Homology	CDS	6655	9177	.	-	0	ID=cds-WP_023254682.1;Parent=gene-CFSAN001082_RS41325;Dbxref=GenBank:WP_023254682.1;Name=WP_023254682.1;Ontology_term=GO:0009252,GO:0046677,GO:0008658,GO:0008955,GO:0009274;gbkey=CDS;gene=mrcB;go_component=peptidoglycan-based cell wall|0009274||IEA;go_function=penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,response to antibiotic|0046677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459195.1;locus_tag=CFSAN001082_RS41325;product=bifunctional glycosyl transferase/transpeptidase;protein_id=WP_023254682.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	9318	11747	.	-	.	ID=gene-CFSAN001082_RS41330;Name=hrpB;gbkey=Gene;gene=hrpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41330;old_locus_tag=CFSAN001082_17741
NZ_APAH01000363.1	Protein Homology	CDS	9318	11747	.	-	0	ID=cds-WP_023254683.1;Parent=gene-CFSAN001082_RS41330;Dbxref=GenBank:WP_023254683.1;Name=WP_023254683.1;Ontology_term=GO:0004386,GO:0005524;gbkey=CDS;gene=hrpB;go_function=helicase activity|0004386||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414690.4;locus_tag=CFSAN001082_RS41330;product=ATP-dependent helicase HrpB;protein_id=WP_023254683.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	11820	12350	.	+	.	ID=gene-CFSAN001082_RS41335;Name=thpR;gbkey=Gene;gene=thpR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41335;old_locus_tag=CFSAN001082_17746
NZ_APAH01000363.1	Protein Homology	CDS	11820	12350	.	+	0	ID=cds-WP_001748937.1;Parent=gene-CFSAN001082_RS41335;Dbxref=GenBank:WP_001748937.1;Name=WP_001748937.1;Ontology_term=GO:0004113,GO:0008664;gbkey=CDS;gene=thpR;go_function=2'%2C3'-cyclic-nucleotide 3'-phosphodiesterase activity|0004113||IEA,RNA 2'%2C3'-cyclic 3'-phosphodiesterase activity|0008664||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459193.1;locus_tag=CFSAN001082_RS41335;product=RNA 2'%2C3'-cyclic phosphodiesterase;protein_id=WP_001748937.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	12367	13071	.	+	.	ID=gene-CFSAN001082_RS41340;Name=sfsA;gbkey=Gene;gene=sfsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41340;old_locus_tag=CFSAN001082_17751
NZ_APAH01000363.1	Protein Homology	CDS	12367	13071	.	+	0	ID=cds-WP_000899408.1;Parent=gene-CFSAN001082_RS41340;Dbxref=GenBank:WP_000899408.1;Name=WP_000899408.1;Ontology_term=GO:0003677;gbkey=CDS;gene=sfsA;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459192.1;locus_tag=CFSAN001082_RS41340;product=DNA/RNA nuclease SfsA;protein_id=WP_000899408.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	13248	13703	.	+	.	ID=gene-CFSAN001082_RS41345;Name=dksA;gbkey=Gene;gene=dksA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41345;old_locus_tag=CFSAN001082_17756
NZ_APAH01000363.1	Protein Homology	CDS	13248	13703	.	+	0	ID=cds-WP_001155232.1;Parent=gene-CFSAN001082_RS41345;Dbxref=GenBank:WP_001155232.1;Name=WP_001155232.1;gbkey=CDS;gene=dksA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002209354.1;locus_tag=CFSAN001082_RS41345;product=RNA polymerase-binding protein DksA;protein_id=WP_001155232.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	13771	14667	.	+	.	ID=gene-CFSAN001082_RS41350;Name=gluQRS;gbkey=Gene;gene=gluQRS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41350;old_locus_tag=CFSAN001082_17761
NZ_APAH01000363.1	Protein Homology	CDS	13771	14667	.	+	0	ID=cds-WP_023254684.1;Parent=gene-CFSAN001082_RS41350;Dbxref=GenBank:WP_023254684.1;Name=WP_023254684.1;Ontology_term=GO:0006400,GO:0043039,GO:0000166,GO:0004812,GO:0005524;gbkey=CDS;gene=gluQRS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,ATP binding|0005524||IEA;go_process=tRNA modification|0006400||IEA,tRNA aminoacylation|0043039||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001549989.1;locus_tag=CFSAN001082_RS41350;product=tRNA glutamyl-Q(34) synthetase GluQRS;protein_id=WP_023254684.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	14829	16226	.	+	.	ID=gene-CFSAN001082_RS41355;Name=pcnB;gbkey=Gene;gene=pcnB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41355;old_locus_tag=CFSAN001082_17766
NZ_APAH01000363.1	Protein Homology	CDS	14829	16226	.	+	0	ID=cds-WP_204355897.1;Parent=gene-CFSAN001082_RS41355;Dbxref=GenBank:WP_204355897.1;Name=WP_204355897.1;Ontology_term=GO:0003723,GO:1990817;gbkey=CDS;gene=pcnB;go_function=RNA binding|0003723||IEA,poly(A) RNA polymerase activity|1990817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414685.4;locus_tag=CFSAN001082_RS41355;product=polynucleotide adenylyltransferase PcnB;protein_id=WP_204355897.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	16223	16702	.	+	.	ID=gene-CFSAN001082_RS41360;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41360;old_locus_tag=CFSAN001082_17771
NZ_APAH01000363.1	Protein Homology	CDS	16223	16702	.	+	0	ID=cds-WP_000150777.1;Parent=gene-CFSAN001082_RS41360;Dbxref=GenBank:WP_000150777.1;Name=WP_000150777.1;gbkey=CDS;gene=folK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459188.1;locus_tag=CFSAN001082_RS41360;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=WP_000150777.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	16823	17614	.	+	.	ID=gene-CFSAN001082_RS41365;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41365;old_locus_tag=CFSAN001082_17776
NZ_APAH01000363.1	Protein Homology	CDS	16823	17614	.	+	0	ID=cds-WP_000805489.1;Parent=gene-CFSAN001082_RS41365;Dbxref=GenBank:WP_000805489.1;Name=WP_000805489.1;Ontology_term=GO:0015940,GO:0003864;gbkey=CDS;gene=panB;go_function=3-methyl-2-oxobutanoate hydroxymethyltransferase activity|0003864||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000805487.1;locus_tag=CFSAN001082_RS41365;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=WP_000805489.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	17740	18594	.	+	.	ID=gene-CFSAN001082_RS41370;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41370;old_locus_tag=CFSAN001082_17781
NZ_APAH01000363.1	Protein Homology	CDS	17740	18594	.	+	0	ID=cds-WP_000905349.1;Parent=gene-CFSAN001082_RS41370;Dbxref=GenBank:WP_000905349.1;Name=WP_000905349.1;Ontology_term=GO:0015940,GO:0004592;gbkey=CDS;gene=panC;go_function=pantoate-beta-alanine ligase activity|0004592||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459186.1;locus_tag=CFSAN001082_RS41370;product=pantoate--beta-alanine ligase;protein_id=WP_000905349.1;transl_table=11
NZ_APAH01000363.1	RefSeq	gene	18689	19069	.	+	.	ID=gene-CFSAN001082_RS41375;Name=panD;gbkey=Gene;gene=panD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41375;old_locus_tag=CFSAN001082_17786
NZ_APAH01000363.1	Protein Homology	CDS	18689	19069	.	+	0	ID=cds-WP_000621526.1;Parent=gene-CFSAN001082_RS41375;Dbxref=GenBank:WP_000621526.1;Name=WP_000621526.1;Ontology_term=GO:0006523,GO:0004068;gbkey=CDS;gene=panD;go_function=aspartate 1-decarboxylase activity|0004068||IEA;go_process=alanine biosynthetic process|0006523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124704.1;locus_tag=CFSAN001082_RS41375;product=aspartate 1-decarboxylase;protein_id=WP_000621526.1;transl_table=11
##sequence-region NZ_APAH01000364.1 1 639
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000364.1	RefSeq	region	1	639	.	+	.	ID=NZ_APAH01000364.1:1..639;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000364.1	RefSeq	gene	1	631	.	-	.	ID=gene-CFSAN001082_RS41380;Name=waaZ;gbkey=Gene;gene=waaZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41380;old_locus_tag=CFSAN001082_17791;partial=true;start_range=.,1
NZ_APAH01000364.1	Protein Homology	CDS	1	631	.	-	0	ID=cds-WP_024150322.1;Parent=gene-CFSAN001082_RS41380;Dbxref=GenBank:WP_024150322.1;Name=WP_024150322.1;Ontology_term=GO:0009244,GO:0043842;gbkey=CDS;gene=waaZ;go_function=Kdo transferase activity|0043842||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462615.1;locus_tag=CFSAN001082_RS41380;partial=true;product=3-deoxy-D-manno-oct-2-ulosonate III transferase WaaZ;protein_id=WP_024150322.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000365.1 1 53731
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000365.1	RefSeq	region	1	53731	.	+	.	ID=NZ_APAH01000365.1:1..53731;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000365.1	RefSeq	gene	189	713	.	+	.	ID=gene-CFSAN001082_RS41385;Name=lpfA;gbkey=Gene;gene=lpfA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41385;old_locus_tag=CFSAN001082_17796
NZ_APAH01000365.1	Protein Homology	CDS	189	713	.	+	0	ID=cds-WP_001518613.1;Parent=gene-CFSAN001082_RS41385;Dbxref=GenBank:WP_001518613.1;Name=WP_001518613.1;gbkey=CDS;gene=lpfA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001519917.1;locus_tag=CFSAN001082_RS41385;product=long polar fimbria major subunit LpfA;protein_id=WP_001518613.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	798	1496	.	+	.	ID=gene-CFSAN001082_RS41390;Name=lpfB;gbkey=Gene;gene=lpfB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41390;old_locus_tag=CFSAN001082_17801
NZ_APAH01000365.1	Protein Homology	CDS	798	1496	.	+	0	ID=cds-WP_001082125.1;Parent=gene-CFSAN001082_RS41390;Dbxref=GenBank:WP_001082125.1;Name=WP_001082125.1;gbkey=CDS;gene=lpfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462540.1;locus_tag=CFSAN001082_RS41390;product=long polar fimbrial chaperone LpfB;protein_id=WP_001082125.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	1519	4047	.	+	.	ID=gene-CFSAN001082_RS41395;Name=lpfC;gbkey=Gene;gene=lpfC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41395;old_locus_tag=CFSAN001082_17806
NZ_APAH01000365.1	Protein Homology	CDS	1519	4047	.	+	0	ID=cds-WP_023254686.1;Parent=gene-CFSAN001082_RS41395;Dbxref=GenBank:WP_023254686.1;Name=WP_023254686.1;gbkey=CDS;gene=lpfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462539.1;locus_tag=CFSAN001082_RS41395;product=outer membrane usher protein LpfC;protein_id=WP_023254686.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	4065	5129	.	+	.	ID=gene-CFSAN001082_RS41400;Name=lpfD;gbkey=Gene;gene=lpfD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41400;old_locus_tag=CFSAN001082_17811
NZ_APAH01000365.1	Protein Homology	CDS	4065	5129	.	+	0	ID=cds-WP_023254687.1;Parent=gene-CFSAN001082_RS41400;Dbxref=GenBank:WP_023254687.1;Name=WP_023254687.1;gbkey=CDS;gene=lpfD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462538.1;locus_tag=CFSAN001082_RS41400;product=long polar fimbrial protein LpfD;protein_id=WP_023254687.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	5135	5662	.	+	.	ID=gene-CFSAN001082_RS41405;Name=lpfE;gbkey=Gene;gene=lpfE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41405;old_locus_tag=CFSAN001082_17816
NZ_APAH01000365.1	Protein Homology	CDS	5135	5662	.	+	0	ID=cds-WP_017441629.1;Parent=gene-CFSAN001082_RS41405;Dbxref=GenBank:WP_017441629.1;Name=WP_017441629.1;gbkey=CDS;gene=lpfE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462537.1;locus_tag=CFSAN001082_RS41405;product=long polar fimbrial protein LpfE;protein_id=WP_017441629.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	5880	7571	.	+	.	ID=gene-CFSAN001082_RS41410;Name=eptB;gbkey=Gene;gene=eptB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41410;old_locus_tag=CFSAN001082_17821
NZ_APAH01000365.1	Protein Homology	CDS	5880	7571	.	+	0	ID=cds-WP_023138204.1;Parent=gene-CFSAN001082_RS41410;Dbxref=GenBank:WP_023138204.1;Name=WP_023138204.1;Ontology_term=GO:0008484;gbkey=CDS;gene=eptB;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462536.1;locus_tag=CFSAN001082_RS41410;product=kdo(2)-lipid A phosphoethanolamine 7''-transferase;protein_id=WP_023138204.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	7662	7738	.	+	.	ID=gene-CFSAN001082_RS41415;Name=CFSAN001082_RS41415;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS41415;old_locus_tag=CFSAN001082_t18003
NZ_APAH01000365.1	tRNAscan-SE	tRNA	7662	7738	.	+	.	ID=rna-CFSAN001082_RS41415;Parent=gene-CFSAN001082_RS41415;anticodon=(pos:7696..7698);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS41415;product=tRNA-Pro
NZ_APAH01000365.1	tRNAscan-SE	exon	7662	7738	.	+	.	ID=exon-CFSAN001082_RS41415-1;Parent=rna-CFSAN001082_RS41415;anticodon=(pos:7696..7698);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS41415;product=tRNA-Pro
NZ_APAH01000365.1	RefSeq	gene	7774	7907	.	+	.	ID=gene-CFSAN001082_RS46330;Name=CFSAN001082_RS46330;gbkey=Gene;gene_biotype=ncRNA;locus_tag=CFSAN001082_RS46330
NZ_APAH01000365.1	cmsearch	ncRNA	7774	7907	.	+	.	ID=rna-CFSAN001082_RS46330;Parent=gene-CFSAN001082_RS46330;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46330;product=RtT sRNA
NZ_APAH01000365.1	cmsearch	exon	7774	7907	.	+	.	ID=exon-CFSAN001082_RS46330-1;Parent=rna-CFSAN001082_RS46330;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46330;product=RtT sRNA
NZ_APAH01000365.1	RefSeq	gene	7898	8905	.	-	.	ID=gene-CFSAN001082_RS41420;Name=CFSAN001082_RS41420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41420;old_locus_tag=CFSAN001082_17826
NZ_APAH01000365.1	Protein Homology	CDS	7898	8905	.	-	0	ID=cds-WP_023254688.1;Parent=gene-CFSAN001082_RS41420;Dbxref=GenBank:WP_023254688.1;Name=WP_023254688.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462535.1;locus_tag=CFSAN001082_RS41420;product=substrate-binding domain-containing protein;protein_id=WP_023254688.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	9055	10179	.	+	.	ID=gene-CFSAN001082_RS41425;Name=CFSAN001082_RS41425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41425;old_locus_tag=CFSAN001082_17831
NZ_APAH01000365.1	Protein Homology	CDS	9055	10179	.	+	0	ID=cds-WP_023254689.1;Parent=gene-CFSAN001082_RS41425;Dbxref=GenBank:WP_023254689.1;Name=WP_023254689.1;Ontology_term=GO:0004062;gbkey=CDS;go_function=aryl sulfotransferase activity|0004062||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462534.1;locus_tag=CFSAN001082_RS41425;product=aryl-sulfate sulfotransferase;protein_id=WP_023254689.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	10237	11562	.	+	.	ID=gene-CFSAN001082_RS41430;Name=CFSAN001082_RS41430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41430;old_locus_tag=CFSAN001082_17836
NZ_APAH01000365.1	Protein Homology	CDS	10237	11562	.	+	0	ID=cds-WP_001136079.1;Parent=gene-CFSAN001082_RS41430;Dbxref=GenBank:WP_001136079.1;Name=WP_001136079.1;Ontology_term=GO:0015851,GO:0055085,GO:0015205,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=nucleobase transmembrane transporter activity|0015205||IEA,transmembrane transporter activity|0022857||IEA;go_process=nucleobase transport|0015851||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462533.1;locus_tag=CFSAN001082_RS41430;product=uracil-xanthine permease family protein;protein_id=WP_001136079.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	12118	13725	.	+	.	ID=gene-CFSAN001082_RS41435;Name=dppA;gbkey=Gene;gene=dppA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41435;old_locus_tag=CFSAN001082_17841
NZ_APAH01000365.1	Protein Homology	CDS	12118	13725	.	+	0	ID=cds-WP_000028049.1;Parent=gene-CFSAN001082_RS41435;Dbxref=GenBank:WP_000028049.1;Name=WP_000028049.1;Ontology_term=GO:0042938,GO:0071916,GO:0030288;gbkey=CDS;gene=dppA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=dipeptide transmembrane transporter activity|0071916||IEA;go_process=dipeptide transport|0042938||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462532.1;locus_tag=CFSAN001082_RS41435;product=dipeptide ABC transporter periplasmic-binding protein DppA;protein_id=WP_000028049.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	13882	14901	.	+	.	ID=gene-CFSAN001082_RS41440;Name=dppB;gbkey=Gene;gene=dppB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41440;old_locus_tag=CFSAN001082_17846
NZ_APAH01000365.1	Protein Homology	CDS	13882	14901	.	+	0	ID=cds-WP_023254690.1;Parent=gene-CFSAN001082_RS41440;Dbxref=GenBank:WP_023254690.1;Name=WP_023254690.1;gbkey=CDS;gene=dppB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133865.1;locus_tag=CFSAN001082_RS41440;product=dipeptide ABC transporter permease DppB;protein_id=WP_023254690.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	14911	15813	.	+	.	ID=gene-CFSAN001082_RS41445;Name=dppC;gbkey=Gene;gene=dppC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41445;old_locus_tag=CFSAN001082_17851
NZ_APAH01000365.1	Protein Homology	CDS	14911	15813	.	+	0	ID=cds-WP_000084690.1;Parent=gene-CFSAN001082_RS41445;Dbxref=GenBank:WP_000084690.1;Name=WP_000084690.1;Ontology_term=GO:0055085;gbkey=CDS;gene=dppC;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010426221.1;locus_tag=CFSAN001082_RS41445;product=dipeptide ABC transporter permease DppC;protein_id=WP_000084690.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	15824	16807	.	+	.	ID=gene-CFSAN001082_RS41450;Name=dppD;gbkey=Gene;gene=dppD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41450;old_locus_tag=CFSAN001082_17856
NZ_APAH01000365.1	Protein Homology	CDS	15824	16807	.	+	0	ID=cds-WP_001196509.1;Parent=gene-CFSAN001082_RS41450;Dbxref=GenBank:WP_001196509.1;Name=WP_001196509.1;Ontology_term=GO:0015833,GO:0000166,GO:0005524;gbkey=CDS;gene=dppD;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462529.1;locus_tag=CFSAN001082_RS41450;product=dipeptide ABC transporter ATP-binding protein;protein_id=WP_001196509.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	16804	17817	.	+	.	ID=gene-CFSAN001082_RS41455;Name=dppF;gbkey=Gene;gene=dppF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41455;old_locus_tag=CFSAN001082_17861
NZ_APAH01000365.1	Protein Homology	CDS	16804	17817	.	+	0	ID=cds-WP_000103563.1;Parent=gene-CFSAN001082_RS41455;Dbxref=GenBank:WP_000103563.1;Name=WP_000103563.1;gbkey=CDS;gene=dppF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462528.1;locus_tag=CFSAN001082_RS41455;product=dipeptide ABC transporter ATP-binding subunit DppF;protein_id=WP_000103563.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	17918	19216	.	-	.	ID=gene-CFSAN001082_RS41460;Name=CFSAN001082_RS41460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41460;old_locus_tag=CFSAN001082_17866
NZ_APAH01000365.1	Protein Homology	CDS	17918	19216	.	-	0	ID=cds-WP_023254691.1;Parent=gene-CFSAN001082_RS41460;Dbxref=GenBank:WP_023254691.1;Name=WP_023254691.1;Ontology_term=GO:0003333;gbkey=CDS;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462527.1;locus_tag=CFSAN001082_RS41460;product=aromatic amino acid transport family protein;protein_id=WP_023254691.1;transl_table=11
NZ_APAH01000365.1	RefSeq	pseudogene	19334	19486	.	-	.	ID=gene-CFSAN001082_RS48985;Name=CFSAN001082_RS48985;end_range=19486,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48985;old_locus_tag=CFSAN001082_17871;partial=true;pseudo=true
NZ_APAH01000365.1	Protein Homology	CDS	19334	19486	.	-	0	ID=cds-CFSAN001082_RS48985;Parent=gene-CFSAN001082_RS48985;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0019346,GO:0030170;end_range=19486,.;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=transsulfuration|0019346||IEA;inference=COORDINATES: protein motif:HMM:NF013237.6;locus_tag=CFSAN001082_RS48985;partial=true;product=PLP-dependent transferase;pseudo=true;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	19859	19966	.	+	.	ID=gene-CFSAN001082_RS41470;Name=CFSAN001082_RS41470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41470;old_locus_tag=CFSAN001082_17876
NZ_APAH01000365.1	Protein Homology	CDS	19859	19966	.	+	0	ID=cds-WP_001537650.1;Parent=gene-CFSAN001082_RS41470;Dbxref=GenBank:WP_001537650.1;Name=WP_001537650.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502657.1;locus_tag=CFSAN001082_RS41470;product=type I toxin-antitoxin system toxin Ldr family protein;protein_id=WP_001537650.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	20048	21727	.	-	.	ID=gene-CFSAN001082_RS41475;Name=bcsG;gbkey=Gene;gene=bcsG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41475;old_locus_tag=CFSAN001082_17881
NZ_APAH01000365.1	Protein Homology	CDS	20048	21727	.	-	0	ID=cds-WP_023254692.1;Parent=gene-CFSAN001082_RS41475;Dbxref=GenBank:WP_023254692.1;Name=WP_023254692.1;Ontology_term=GO:0030244;gbkey=CDS;gene=bcsG;go_process=cellulose biosynthetic process|0030244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462525.1;locus_tag=CFSAN001082_RS41475;product=cellulose biosynthesis protein BcsG;protein_id=WP_023254692.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	21724	21915	.	-	.	ID=gene-CFSAN001082_RS41480;Name=bcsF;gbkey=Gene;gene=bcsF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41480;old_locus_tag=CFSAN001082_17886
NZ_APAH01000365.1	Protein Homology	CDS	21724	21915	.	-	0	ID=cds-WP_000988321.1;Parent=gene-CFSAN001082_RS41480;Dbxref=GenBank:WP_000988321.1;Name=WP_000988321.1;Ontology_term=GO:0052324;gbkey=CDS;gene=bcsF;go_process=plant-type cell wall cellulose biosynthetic process|0052324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462524.1;locus_tag=CFSAN001082_RS41480;product=cellulose biosynthesis protein BcsF;protein_id=WP_000988321.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	21912	23483	.	-	.	ID=gene-CFSAN001082_RS41485;Name=bcsE;gbkey=Gene;gene=bcsE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41485;old_locus_tag=CFSAN001082_17891
NZ_APAH01000365.1	Protein Homology	CDS	21912	23483	.	-	0	ID=cds-WP_023254693.1;Parent=gene-CFSAN001082_RS41485;Dbxref=GenBank:WP_023254693.1;Name=WP_023254693.1;Ontology_term=GO:0035438;gbkey=CDS;gene=bcsE;go_function=cyclic-di-GMP binding|0035438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462523.1;locus_tag=CFSAN001082_RS41485;product=cellulose biosynthesis c-di-GMP-binding protein BcsE;protein_id=WP_023254693.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	23728	23931	.	+	.	ID=gene-CFSAN001082_RS41490;Name=bcsR;gbkey=Gene;gene=bcsR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41490;old_locus_tag=CFSAN001082_17896
NZ_APAH01000365.1	Protein Homology	CDS	23728	23931	.	+	0	ID=cds-WP_000282616.1;Parent=gene-CFSAN001082_RS41490;Dbxref=GenBank:WP_000282616.1;Name=WP_000282616.1;gbkey=CDS;gene=bcsR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462522.1;locus_tag=CFSAN001082_RS41490;product=cellulose biosynthesis protein BcsR;protein_id=WP_000282616.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	23932	24684	.	+	.	ID=gene-CFSAN001082_RS41495;Name=bcsQ;gbkey=Gene;gene=bcsQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41495;old_locus_tag=CFSAN001082_17901
NZ_APAH01000365.1	Protein Homology	CDS	23932	24684	.	+	0	ID=cds-WP_000996115.1;Parent=gene-CFSAN001082_RS41495;Dbxref=GenBank:WP_000996115.1;Name=WP_000996115.1;gbkey=CDS;gene=bcsQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462521.1;locus_tag=CFSAN001082_RS41495;product=cellulose biosynthesis protein BcsQ;protein_id=WP_000996115.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	24681	27305	.	+	.	ID=gene-CFSAN001082_RS41500;Name=bcsA;gbkey=Gene;gene=bcsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41500;old_locus_tag=CFSAN001082_17906
NZ_APAH01000365.1	Protein Homology	CDS	24681	27305	.	+	0	ID=cds-WP_001275346.1;Parent=gene-CFSAN001082_RS41500;Dbxref=GenBank:WP_001275346.1;Name=WP_001275346.1;Ontology_term=GO:0006011,GO:0030244,GO:0016760,GO:0035438,GO:0016020;gbkey=CDS;gene=bcsA;go_component=membrane|0016020||IEA;go_function=cellulose synthase (UDP-forming) activity|0016760||IEA,cyclic-di-GMP binding|0035438||IEA;go_process=UDP-alpha-D-glucose metabolic process|0006011||IEA,cellulose biosynthetic process|0030244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462520.1;locus_tag=CFSAN001082_RS41500;product=UDP-forming cellulose synthase catalytic subunit;protein_id=WP_001275346.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	27316	29616	.	+	.	ID=gene-CFSAN001082_RS41505;Name=bcsB;gbkey=Gene;gene=bcsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41505;old_locus_tag=CFSAN001082_17911
NZ_APAH01000365.1	Protein Homology	CDS	27316	29616	.	+	0	ID=cds-WP_023254694.1;Parent=gene-CFSAN001082_RS41505;Dbxref=GenBank:WP_023254694.1;Name=WP_023254694.1;gbkey=CDS;gene=bcsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462519.1;locus_tag=CFSAN001082_RS41505;product=cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB;protein_id=WP_023254694.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	29620	30729	.	+	.	ID=gene-CFSAN001082_RS41510;Name=bcsZ;gbkey=Gene;gene=bcsZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41510;old_locus_tag=CFSAN001082_17916
NZ_APAH01000365.1	Protein Homology	CDS	29620	30729	.	+	0	ID=cds-WP_000988802.1;Parent=gene-CFSAN001082_RS41510;Dbxref=GenBank:WP_000988802.1;Name=WP_000988802.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=bcsZ;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462518.1;locus_tag=CFSAN001082_RS41510;product=cellulose synthase complex periplasmic endoglucanase BcsZ;protein_id=WP_000988802.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	30711	34253	.	+	.	ID=gene-CFSAN001082_RS41515;Name=bcsC;gbkey=Gene;gene=bcsC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41515;old_locus_tag=CFSAN001082_17921
NZ_APAH01000365.1	Protein Homology	CDS	30711	34253	.	+	0	ID=cds-WP_023254695.1;Parent=gene-CFSAN001082_RS41515;Dbxref=GenBank:WP_023254695.1;Name=WP_023254695.1;Ontology_term=GO:0030244,GO:0005515,GO:0019867;gbkey=CDS;gene=bcsC;go_component=outer membrane|0019867||IEA;go_function=protein binding|0005515||IEA;go_process=cellulose biosynthetic process|0030244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462517.1;locus_tag=CFSAN001082_RS41515;product=cellulose synthase complex outer membrane protein BcsC;protein_id=WP_023254695.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	34427	36433	.	+	.	ID=gene-CFSAN001082_RS41520;Name=hmsP;gbkey=Gene;gene=hmsP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41520;old_locus_tag=CFSAN001082_17926
NZ_APAH01000365.1	Protein Homology	CDS	34427	36433	.	+	0	ID=cds-WP_001266362.1;Parent=gene-CFSAN001082_RS41520;Dbxref=GenBank:WP_001266362.1;Name=WP_001266362.1;Ontology_term=GO:0007165;gbkey=CDS;gene=hmsP;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001266355.1;locus_tag=CFSAN001082_RS41520;product=biofilm formation regulator HmsP;protein_id=WP_001266362.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	36591	37877	.	+	.	ID=gene-CFSAN001082_RS41525;Name=dctA;gbkey=Gene;gene=dctA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41525;old_locus_tag=CFSAN001082_17931
NZ_APAH01000365.1	Protein Homology	CDS	36591	37877	.	+	0	ID=cds-WP_000858228.1;Parent=gene-CFSAN001082_RS41525;Dbxref=GenBank:WP_000858228.1;Name=WP_000858228.1;gbkey=CDS;gene=dctA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462515.1;locus_tag=CFSAN001082_RS41525;product=C4-dicarboxylate transporter DctC;protein_id=WP_000858228.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	38097	39584	.	+	.	ID=gene-CFSAN001082_RS41530;Name=CFSAN001082_RS41530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41530;old_locus_tag=CFSAN001082_17936
NZ_APAH01000365.1	Protein Homology	CDS	38097	39584	.	+	0	ID=cds-WP_001163182.1;Parent=gene-CFSAN001082_RS41530;Dbxref=GenBank:WP_001163182.1;Name=WP_001163182.1;Ontology_term=GO:0008237,GO:0046872;gbkey=CDS;go_function=metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462514.1;locus_tag=CFSAN001082_RS41530;product=M16 family metallopeptidase;protein_id=WP_001163182.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	39638	40567	.	-	.	ID=gene-CFSAN001082_RS41535;Name=CFSAN001082_RS41535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41535;old_locus_tag=CFSAN001082_17941
NZ_APAH01000365.1	Protein Homology	CDS	39638	40567	.	-	0	ID=cds-WP_000037586.1;Parent=gene-CFSAN001082_RS41535;Dbxref=GenBank:WP_000037586.1;Name=WP_000037586.1;Ontology_term=GO:0005975,GO:0019200,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=carbohydrate kinase activity|0019200||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462513.1;locus_tag=CFSAN001082_RS41535;product=sugar kinase;protein_id=WP_000037586.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	40796	41563	.	+	.	ID=gene-CFSAN001082_RS41540;Name=pdeH;gbkey=Gene;gene=pdeH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41540;old_locus_tag=CFSAN001082_17946
NZ_APAH01000365.1	Protein Homology	CDS	40796	41563	.	+	0	ID=cds-WP_000595624.1;Parent=gene-CFSAN001082_RS41540;Dbxref=GenBank:WP_000595624.1;Name=WP_000595624.1;gbkey=CDS;gene=pdeH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462512.1;locus_tag=CFSAN001082_RS41540;product=cyclic-guanylate-specific phosphodiesterase;protein_id=WP_000595624.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	41673	43733	.	+	.	ID=gene-CFSAN001082_RS41545;Name=CFSAN001082_RS41545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41545;old_locus_tag=CFSAN001082_17951
NZ_APAH01000365.1	Protein Homology	CDS	41673	43733	.	+	0	ID=cds-WP_000158685.1;Parent=gene-CFSAN001082_RS41545;Dbxref=GenBank:WP_000158685.1;Name=WP_000158685.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462511.1;locus_tag=CFSAN001082_RS41545;product=AsmA family protein;protein_id=WP_000158685.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	43773	45095	.	-	.	ID=gene-CFSAN001082_RS41550;Name=CFSAN001082_RS41550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41550;old_locus_tag=CFSAN001082_17956
NZ_APAH01000365.1	Protein Homology	CDS	43773	45095	.	-	0	ID=cds-WP_001148981.1;Parent=gene-CFSAN001082_RS41550;Dbxref=GenBank:WP_001148981.1;Name=WP_001148981.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462510.1;locus_tag=CFSAN001082_RS41550;product=MFS transporter;protein_id=WP_001148981.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	45446	46474	.	-	.	ID=gene-CFSAN001082_RS41555;Name=yhjD;gbkey=Gene;gene=yhjD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41555;old_locus_tag=CFSAN001082_17961
NZ_APAH01000365.1	Protein Homology	CDS	45446	46474	.	-	0	ID=cds-WP_000191231.1;Parent=gene-CFSAN001082_RS41555;Dbxref=GenBank:WP_000191231.1;Name=WP_000191231.1;gbkey=CDS;gene=yhjD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462509.1;locus_tag=CFSAN001082_RS41555;product=inner membrane protein YhjD;protein_id=WP_000191231.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	46547	47446	.	-	.	ID=gene-CFSAN001082_RS41560;Name=CFSAN001082_RS41560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41560;old_locus_tag=CFSAN001082_17966
NZ_APAH01000365.1	Protein Homology	CDS	46547	47446	.	-	0	ID=cds-WP_023254696.1;Parent=gene-CFSAN001082_RS41560;Dbxref=GenBank:WP_023254696.1;Name=WP_023254696.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462508.1;locus_tag=CFSAN001082_RS41560;product=LysR family transcriptional regulator;protein_id=WP_023254696.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	48077	48679	.	+	.	ID=gene-CFSAN001082_RS41565;Name=CFSAN001082_RS41565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41565;old_locus_tag=CFSAN001082_17971
NZ_APAH01000365.1	Protein Homology	CDS	48077	48679	.	+	0	ID=cds-WP_001196081.1;Parent=gene-CFSAN001082_RS41565;Dbxref=GenBank:WP_001196081.1;Name=WP_001196081.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462507.1;locus_tag=CFSAN001082_RS41565;product=response regulator transcription factor;protein_id=WP_001196081.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	48685	49041	.	-	.	ID=gene-CFSAN001082_RS41570;Name=CFSAN001082_RS41570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41570;old_locus_tag=CFSAN001082_17976
NZ_APAH01000365.1	Protein Homology	CDS	48685	49041	.	-	0	ID=cds-WP_001120251.1;Parent=gene-CFSAN001082_RS41570;Dbxref=GenBank:WP_001120251.1;Name=WP_001120251.1;Ontology_term=GO:0009253,GO:0016998,GO:0003796;gbkey=CDS;go_function=lysozyme activity|0003796||IEA;go_process=peptidoglycan catabolic process|0009253||IEA,cell wall macromolecule catabolic process|0016998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462506.1;locus_tag=CFSAN001082_RS41570;product=glycoside hydrolase family protein;protein_id=WP_001120251.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	49322	50911	.	+	.	ID=gene-CFSAN001082_RS41575;Name=CFSAN001082_RS41575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41575;old_locus_tag=CFSAN001082_17986
NZ_APAH01000365.1	Protein Homology	CDS	49322	50911	.	+	0	ID=cds-WP_023254697.1;Parent=gene-CFSAN001082_RS41575;Dbxref=GenBank:WP_023254697.1;Name=WP_023254697.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462505.1;locus_tag=CFSAN001082_RS41575;product=STY4199 family HEPN domain-containing protein;protein_id=WP_023254697.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	50924	52573	.	-	.	ID=gene-CFSAN001082_RS41580;Name=CFSAN001082_RS41580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41580;old_locus_tag=CFSAN001082_17991
NZ_APAH01000365.1	Protein Homology	CDS	50924	52573	.	-	0	ID=cds-WP_000934257.1;Parent=gene-CFSAN001082_RS41580;Dbxref=GenBank:WP_000934257.1;Name=WP_000934257.1;Ontology_term=GO:0005993,GO:0004555;gbkey=CDS;go_function=alpha%2Calpha-trehalase activity|0004555||IEA;go_process=trehalose catabolic process|0005993||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462504.1;locus_tag=CFSAN001082_RS41580;product=alpha%2Calpha-trehalase;protein_id=WP_000934257.1;transl_table=11
NZ_APAH01000365.1	RefSeq	gene	52899	53618	.	+	.	ID=gene-CFSAN001082_RS41585;Name=CFSAN001082_RS41585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41585;old_locus_tag=CFSAN001082_17996
NZ_APAH01000365.1	Protein Homology	CDS	52899	53618	.	+	0	ID=cds-WP_000572565.1;Parent=gene-CFSAN001082_RS41585;Dbxref=GenBank:WP_000572565.1;Name=WP_000572565.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462503.1;locus_tag=CFSAN001082_RS41585;product=GntR family transcriptional regulator;protein_id=WP_000572565.1;transl_table=11
##sequence-region NZ_APAH01000366.1 1 223
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000366.1	RefSeq	region	1	223	.	+	.	ID=NZ_APAH01000366.1:1..223;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000367.1 1 27171
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000367.1	RefSeq	region	1	27171	.	+	.	ID=NZ_APAH01000367.1:1..27171;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000367.1	RefSeq	gene	496	1272	.	+	.	ID=gene-CFSAN001082_RS41590;Name=CFSAN001082_RS41590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41590;old_locus_tag=CFSAN001082_18003
NZ_APAH01000367.1	Protein Homology	CDS	496	1272	.	+	0	ID=cds-WP_001747536.1;Parent=gene-CFSAN001082_RS41590;Dbxref=GenBank:WP_001747536.1;Name=WP_001747536.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418784.4;locus_tag=CFSAN001082_RS41590;product=threonine/serine ThrE exporter family protein;protein_id=WP_001747536.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	1263	1736	.	+	.	ID=gene-CFSAN001082_RS41595;Name=CFSAN001082_RS41595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41595;old_locus_tag=CFSAN001082_18008
NZ_APAH01000367.1	Protein Homology	CDS	1263	1736	.	+	0	ID=cds-WP_000511329.1;Parent=gene-CFSAN001082_RS41595;Dbxref=GenBank:WP_000511329.1;Name=WP_000511329.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463404.1;locus_tag=CFSAN001082_RS41595;product=threonine/serine exporter;protein_id=WP_000511329.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	1829	2368	.	+	.	ID=gene-CFSAN001082_RS41600;Name=dnaT;gbkey=Gene;gene=dnaT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41600;old_locus_tag=CFSAN001082_18013
NZ_APAH01000367.1	Protein Homology	CDS	1829	2368	.	+	0	ID=cds-WP_000098573.1;Parent=gene-CFSAN001082_RS41600;Dbxref=GenBank:WP_000098573.1;Name=WP_000098573.1;gbkey=CDS;gene=dnaT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463403.1;locus_tag=CFSAN001082_RS41600;product=primosomal protein DnaT;protein_id=WP_000098573.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	2371	3108	.	+	.	ID=gene-CFSAN001082_RS41605;Name=dnaC;gbkey=Gene;gene=dnaC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41605;old_locus_tag=CFSAN001082_18018
NZ_APAH01000367.1	Protein Homology	CDS	2371	3108	.	+	0	ID=cds-WP_000799924.1;Parent=gene-CFSAN001082_RS41605;Dbxref=GenBank:WP_000799924.1;Name=WP_000799924.1;gbkey=CDS;gene=dnaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463402.1;locus_tag=CFSAN001082_RS41605;product=DNA replication protein DnaC;protein_id=WP_000799924.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	3166	3627	.	+	.	ID=gene-CFSAN001082_RS41610;Name=CFSAN001082_RS41610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41610;old_locus_tag=CFSAN001082_18023
NZ_APAH01000367.1	Protein Homology	CDS	3166	3627	.	+	0	ID=cds-WP_023203371.1;Parent=gene-CFSAN001082_RS41610;Dbxref=GenBank:WP_023203371.1;Name=WP_023203371.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463401.1;locus_tag=CFSAN001082_RS41610;product=DUF2501 domain-containing protein;protein_id=WP_023203371.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	3910	6201	.	+	.	ID=gene-CFSAN001082_RS41615;Name=opgB;gbkey=Gene;gene=opgB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41615;old_locus_tag=CFSAN001082_18028
NZ_APAH01000367.1	Protein Homology	CDS	3910	6201	.	+	0	ID=cds-WP_023254698.1;Parent=gene-CFSAN001082_RS41615;Dbxref=GenBank:WP_023254698.1;Name=WP_023254698.1;Ontology_term=GO:0008484;gbkey=CDS;gene=opgB;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465680.1;locus_tag=CFSAN001082_RS41615;product=phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase;protein_id=WP_023254698.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	6335	7345	.	-	.	ID=gene-CFSAN001082_RS41620;Name=CFSAN001082_RS41620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41620;old_locus_tag=CFSAN001082_18033
NZ_APAH01000367.1	Protein Homology	CDS	6335	7345	.	-	0	ID=cds-WP_000900307.1;Parent=gene-CFSAN001082_RS41620;Dbxref=GenBank:WP_000900307.1;Name=WP_000900307.1;Ontology_term=GO:1901135,GO:0097367;gbkey=CDS;go_function=carbohydrate derivative binding|0097367||IEA;go_process=carbohydrate derivative metabolic process|1901135||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005224961.1;locus_tag=CFSAN001082_RS41620;product=SIS domain-containing protein;protein_id=WP_000900307.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	7363	8424	.	-	.	ID=gene-CFSAN001082_RS41625;Name=CFSAN001082_RS41625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41625;old_locus_tag=CFSAN001082_18038
NZ_APAH01000367.1	Protein Homology	CDS	7363	8424	.	-	0	ID=cds-WP_001651437.1;Parent=gene-CFSAN001082_RS41625;Dbxref=GenBank:WP_001651437.1;Name=WP_001651437.1;Ontology_term=GO:0005975,GO:0016787,GO:0097367;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,carbohydrate derivative binding|0097367||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463398.1;locus_tag=CFSAN001082_RS41625;product=SIS domain-containing protein;protein_id=WP_001651437.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	8437	9285	.	-	.	ID=gene-CFSAN001082_RS41630;Name=CFSAN001082_RS41630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41630;old_locus_tag=CFSAN001082_18043
NZ_APAH01000367.1	Protein Homology	CDS	8437	9285	.	-	0	ID=cds-WP_000178065.1;Parent=gene-CFSAN001082_RS41630;Dbxref=GenBank:WP_000178065.1;Name=WP_000178065.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005224959.1;locus_tag=CFSAN001082_RS41630;product=PTS system mannose/fructose/sorbose family transporter subunit IID;protein_id=WP_000178065.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	9263	10042	.	-	.	ID=gene-CFSAN001082_RS41635;Name=CFSAN001082_RS41635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41635;old_locus_tag=CFSAN001082_18048
NZ_APAH01000367.1	Protein Homology	CDS	9263	10042	.	-	0	ID=cds-WP_000228863.1;Parent=gene-CFSAN001082_RS41635;Dbxref=GenBank:WP_000228863.1;Name=WP_000228863.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463396.1;locus_tag=CFSAN001082_RS41635;product=PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC;protein_id=WP_000228863.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	10068	10529	.	-	.	ID=gene-CFSAN001082_RS41640;Name=CFSAN001082_RS41640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41640;old_locus_tag=CFSAN001082_18053
NZ_APAH01000367.1	Protein Homology	CDS	10068	10529	.	-	0	ID=cds-WP_000634729.1;Parent=gene-CFSAN001082_RS41640;Dbxref=GenBank:WP_000634729.1;Name=WP_000634729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463395.1;locus_tag=CFSAN001082_RS41640;product=PTS sugar transporter subunit IIB;protein_id=WP_000634729.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	10544	10966	.	-	.	ID=gene-CFSAN001082_RS41645;Name=CFSAN001082_RS41645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41645;old_locus_tag=CFSAN001082_18058
NZ_APAH01000367.1	Protein Homology	CDS	10544	10966	.	-	0	ID=cds-WP_000820693.1;Parent=gene-CFSAN001082_RS41645;Dbxref=GenBank:WP_000820693.1;Name=WP_000820693.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:0016301,GO:1902495;gbkey=CDS;go_component=transmembrane transporter complex|1902495||IEA;go_function=kinase activity|0016301||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463394.1;locus_tag=CFSAN001082_RS41645;product=PTS sugar transporter subunit IIA;protein_id=WP_000820693.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	11068	13833	.	-	.	ID=gene-CFSAN001082_RS41650;Name=CFSAN001082_RS41650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41650;old_locus_tag=CFSAN001082_18063
NZ_APAH01000367.1	Protein Homology	CDS	11068	13833	.	-	0	ID=cds-WP_001224204.1;Parent=gene-CFSAN001082_RS41650;Dbxref=GenBank:WP_001224204.1;Name=WP_001224204.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463393.1;locus_tag=CFSAN001082_RS41650;product=sigma 54-interacting transcriptional regulator;protein_id=WP_001224204.1;transl_table=11
NZ_APAH01000367.1	RefSeq	pseudogene	13970	14044	.	+	.	ID=gene-CFSAN001082_RS49270;Name=CFSAN001082_RS49270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49270;partial=true;pseudo=true;start_range=.,13970
NZ_APAH01000367.1	Protein Homology	CDS	13970	14044	.	+	0	ID=cds-CFSAN001082_RS49270;Parent=gene-CFSAN001082_RS49270;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012134222.1;locus_tag=CFSAN001082_RS49270;partial=true;product=GNAT family N-acetyltransferase;pseudo=true;start_range=.,13970;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	14157	15818	.	-	.	ID=gene-CFSAN001082_RS41655;Name=tsr;gbkey=Gene;gene=tsr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41655;old_locus_tag=CFSAN001082_18068
NZ_APAH01000367.1	Protein Homology	CDS	14157	15818	.	-	0	ID=cds-WP_023254699.1;Parent=gene-CFSAN001082_RS41655;Dbxref=GenBank:WP_023254699.1;Name=WP_023254699.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0016020;gbkey=CDS;gene=tsr;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463392.1;locus_tag=CFSAN001082_RS41655;product=methyl-accepting chemotaxis protein;protein_id=WP_023254699.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	16185	18335	.	+	.	ID=gene-CFSAN001082_RS41660;Name=btsT;gbkey=Gene;gene=btsT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41660;old_locus_tag=CFSAN001082_18073
NZ_APAH01000367.1	Protein Homology	CDS	16185	18335	.	+	0	ID=cds-WP_000379928.1;Parent=gene-CFSAN001082_RS41660;Dbxref=GenBank:WP_000379928.1;Name=WP_000379928.1;gbkey=CDS;gene=btsT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463391.1;locus_tag=CFSAN001082_RS41660;product=pyruvate/proton symporter BtsT;protein_id=WP_000379928.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	18430	18633	.	+	.	ID=gene-CFSAN001082_RS41665;Name=CFSAN001082_RS41665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41665;old_locus_tag=CFSAN001082_18078
NZ_APAH01000367.1	Protein Homology	CDS	18430	18633	.	+	0	ID=cds-WP_000460616.1;Parent=gene-CFSAN001082_RS41665;Dbxref=GenBank:WP_000460616.1;Name=WP_000460616.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463390.1;locus_tag=CFSAN001082_RS41665;product=YbdD/YjiX family protein;protein_id=WP_000460616.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	18644	19600	.	+	.	ID=gene-CFSAN001082_RS41670;Name=yjiA;gbkey=Gene;gene=yjiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41670;old_locus_tag=CFSAN001082_18083
NZ_APAH01000367.1	Protein Homology	CDS	18644	19600	.	+	0	ID=cds-WP_023254700.1;Parent=gene-CFSAN001082_RS41670;Dbxref=GenBank:WP_023254700.1;Name=WP_023254700.1;gbkey=CDS;gene=yjiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463389.1;locus_tag=CFSAN001082_RS41670;product=GTPase;protein_id=WP_023254700.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	19675	19977	.	-	.	ID=gene-CFSAN001082_RS41675;Name=CFSAN001082_RS41675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41675;old_locus_tag=CFSAN001082_18088
NZ_APAH01000367.1	Protein Homology	CDS	19675	19977	.	-	0	ID=cds-WP_023254701.1;Parent=gene-CFSAN001082_RS41675;Dbxref=GenBank:WP_023254701.1;Name=WP_023254701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463388.1;locus_tag=CFSAN001082_RS41675;product=BrnA antitoxin family protein;protein_id=WP_023254701.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	19964	20251	.	-	.	ID=gene-CFSAN001082_RS41680;Name=CFSAN001082_RS41680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41680;old_locus_tag=CFSAN001082_18093
NZ_APAH01000367.1	Protein Homology	CDS	19964	20251	.	-	0	ID=cds-WP_001131963.1;Parent=gene-CFSAN001082_RS41680;Dbxref=GenBank:WP_001131963.1;Name=WP_001131963.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463387.1;locus_tag=CFSAN001082_RS41680;product=BrnT family toxin;protein_id=WP_001131963.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	20520	21434	.	-	.	ID=gene-CFSAN001082_RS41685;Name=CFSAN001082_RS41685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41685;old_locus_tag=CFSAN001082_18098
NZ_APAH01000367.1	Protein Homology	CDS	20520	21434	.	-	0	ID=cds-WP_023254702.1;Parent=gene-CFSAN001082_RS41685;Dbxref=GenBank:WP_023254702.1;Name=WP_023254702.1;Ontology_term=GO:0009307,GO:0003677,GO:0004519;gbkey=CDS;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463386.1;locus_tag=CFSAN001082_RS41685;product=restriction endonuclease;protein_id=WP_023254702.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	21632	25141	.	+	.	ID=gene-CFSAN001082_RS41690;Name=hsdR;gbkey=Gene;gene=hsdR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41690;old_locus_tag=CFSAN001082_18103
NZ_APAH01000367.1	Protein Homology	CDS	21632	25141	.	+	0	ID=cds-WP_023254703.1;Parent=gene-CFSAN001082_RS41690;Dbxref=GenBank:WP_023254703.1;Name=WP_023254703.1;gbkey=CDS;gene=hsdR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463385.1;locus_tag=CFSAN001082_RS41690;product=type I restriction-modification system endonuclease;protein_id=WP_023254703.1;transl_table=11
NZ_APAH01000367.1	RefSeq	gene	25335	26924	.	+	.	ID=gene-CFSAN001082_RS41695;Name=hsdM;gbkey=Gene;gene=hsdM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41695;old_locus_tag=CFSAN001082_18108
NZ_APAH01000367.1	Protein Homology	CDS	25335	26924	.	+	0	ID=cds-WP_023254704.1;Parent=gene-CFSAN001082_RS41695;Dbxref=GenBank:WP_023254704.1;Name=WP_023254704.1;gbkey=CDS;gene=hsdM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418769.1;locus_tag=CFSAN001082_RS41695;product=type I restriction-modification system methyltransferase;protein_id=WP_023254704.1;transl_table=11
NZ_APAH01000367.1	RefSeq	pseudogene	26921	27171	.	+	.	ID=gene-CFSAN001082_RS41700;Name=CFSAN001082_RS41700;end_range=27171,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS41700;old_locus_tag=CFSAN001082_18113;partial=true;pseudo=true
NZ_APAH01000367.1	GeneMarkS-2+	CDS	26921	27171	.	+	0	ID=cds-CFSAN001082_RS41700;Parent=gene-CFSAN001082_RS41700;Note=specificity determinant for hsdM and hsdR%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=27171,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS41700;partial=true;product=restriction endonuclease subunit S;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000368.1 1 4808
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000368.1	RefSeq	region	1	4808	.	+	.	ID=NZ_APAH01000368.1:1..4808;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000368.1	RefSeq	pseudogene	1	596	.	-	.	ID=gene-CFSAN001082_RS41705;Name=CFSAN001082_RS41705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS41705;old_locus_tag=CFSAN001082_18118;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000368.1	Protein Homology	CDS	1	596	.	-	0	ID=cds-CFSAN001082_RS41705;Parent=gene-CFSAN001082_RS41705;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461943.1;locus_tag=CFSAN001082_RS41705;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000368.1	RefSeq	gene	593	1336	.	-	.	ID=gene-CFSAN001082_RS41710;Name=stdC;gbkey=Gene;gene=stdC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41710;old_locus_tag=CFSAN001082_18123
NZ_APAH01000368.1	Protein Homology	CDS	593	1336	.	-	0	ID=cds-WP_000798491.1;Parent=gene-CFSAN001082_RS41710;Dbxref=GenBank:WP_000798491.1;Name=WP_000798491.1;gbkey=CDS;gene=stdC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461944.1;locus_tag=CFSAN001082_RS41710;product=fimbrial biogenesis chaperone StdC;protein_id=WP_000798491.1;transl_table=11
NZ_APAH01000368.1	RefSeq	gene	1377	3866	.	-	.	ID=gene-CFSAN001082_RS41715;Name=stdB;gbkey=Gene;gene=stdB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41715;old_locus_tag=CFSAN001082_18128
NZ_APAH01000368.1	Protein Homology	CDS	1377	3866	.	-	0	ID=cds-WP_023254707.1;Parent=gene-CFSAN001082_RS41715;Dbxref=GenBank:WP_023254707.1;Name=WP_023254707.1;gbkey=CDS;gene=stdB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461945.1;locus_tag=CFSAN001082_RS41715;product=fimbrial outer membrane usher protein StdB;protein_id=WP_023254707.1;transl_table=11
NZ_APAH01000368.1	RefSeq	gene	3986	4573	.	-	.	ID=gene-CFSAN001082_RS41720;Name=CFSAN001082_RS41720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41720;old_locus_tag=CFSAN001082_18133
NZ_APAH01000368.1	Protein Homology	CDS	3986	4573	.	-	0	ID=cds-WP_023254708.1;Parent=gene-CFSAN001082_RS41720;Dbxref=GenBank:WP_023254708.1;Name=WP_023254708.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015406296.1;locus_tag=CFSAN001082_RS41720;product=fimbrial protein;protein_id=WP_023254708.1;transl_table=11
##sequence-region NZ_APAH01000369.1 1 12844
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000369.1	RefSeq	region	1	12844	.	+	.	ID=NZ_APAH01000369.1:1..12844;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000369.1	RefSeq	gene	124	1131	.	+	.	ID=gene-CFSAN001082_RS41725;Name=CFSAN001082_RS41725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41725;old_locus_tag=CFSAN001082_18138
NZ_APAH01000369.1	Protein Homology	CDS	124	1131	.	+	0	ID=cds-WP_000201071.1;Parent=gene-CFSAN001082_RS41725;Dbxref=GenBank:WP_000201071.1;Name=WP_000201071.1;Ontology_term=GO:0006351,GO:0006355,GO:0045892,GO:0000976,GO:0003700,GO:0043565;gbkey=CDS;go_function=transcription cis-regulatory region binding|0000976||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460514.1;locus_tag=CFSAN001082_RS41725;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_000201071.1;transl_table=11
NZ_APAH01000369.1	RefSeq	gene	1275	2726	.	+	.	ID=gene-CFSAN001082_RS41730;Name=nhaC;gbkey=Gene;gene=nhaC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41730;old_locus_tag=CFSAN001082_18143
NZ_APAH01000369.1	Protein Homology	CDS	1275	2726	.	+	0	ID=cds-WP_001276629.1;Parent=gene-CFSAN001082_RS41730;Dbxref=GenBank:WP_001276629.1;Name=WP_001276629.1;Ontology_term=GO:0006814,GO:1902600,GO:0015297,GO:0015385,GO:0016020;gbkey=CDS;gene=nhaC;go_component=membrane|0016020||IEA;go_function=antiporter activity|0015297||IEA,sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460515.1;locus_tag=CFSAN001082_RS41730;product=Na+/H+ antiporter NhaC;protein_id=WP_001276629.1;transl_table=11
NZ_APAH01000369.1	RefSeq	gene	2739	3941	.	+	.	ID=gene-CFSAN001082_RS41735;Name=CFSAN001082_RS41735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41735;old_locus_tag=CFSAN001082_18148
NZ_APAH01000369.1	Protein Homology	CDS	2739	3941	.	+	0	ID=cds-WP_017441346.1;Parent=gene-CFSAN001082_RS41735;Dbxref=GenBank:WP_017441346.1;Name=WP_017441346.1;Ontology_term=GO:0009086,GO:0030170,GO:0047804;gbkey=CDS;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine-S-conjugate beta-lyase activity|0047804||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460516.1;locus_tag=CFSAN001082_RS41735;product=MalY/PatB family protein;protein_id=WP_017441346.1;transl_table=11
NZ_APAH01000369.1	RefSeq	gene	4054	6129	.	-	.	ID=gene-CFSAN001082_RS41740;Name=glgX;gbkey=Gene;gene=glgX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41740;old_locus_tag=CFSAN001082_18153
NZ_APAH01000369.1	Protein Homology	CDS	4054	6129	.	-	0	ID=cds-WP_023254709.1;Parent=gene-CFSAN001082_RS41740;Dbxref=GenBank:WP_023254709.1;Name=WP_023254709.1;Ontology_term=GO:0005980,GO:0004133,GO:0004553;gbkey=CDS;gene=glgX;go_function=glycogen debranching enzyme activity|0004133||IEA,hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=glycogen catabolic process|0005980||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460517.1;locus_tag=CFSAN001082_RS41740;product=glycogen debranching protein GlgX;protein_id=WP_023254709.1;transl_table=11
NZ_APAH01000369.1	RefSeq	gene	6186	8714	.	-	.	ID=gene-CFSAN001082_RS41745;Name=treY;gbkey=Gene;gene=treY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41745;old_locus_tag=CFSAN001082_18158
NZ_APAH01000369.1	Protein Homology	CDS	6186	8714	.	-	0	ID=cds-WP_023254710.1;Parent=gene-CFSAN001082_RS41745;Dbxref=GenBank:WP_023254710.1;Name=WP_023254710.1;Ontology_term=GO:0005992,GO:0047470;gbkey=CDS;gene=treY;go_function=(1%2C4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity|0047470||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460518.1;locus_tag=CFSAN001082_RS41745;product=malto-oligosyltrehalose synthase;protein_id=WP_023254710.1;transl_table=11
NZ_APAH01000369.1	RefSeq	gene	8711	10495	.	-	.	ID=gene-CFSAN001082_RS41750;Name=treZ;gbkey=Gene;gene=treZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41750;old_locus_tag=CFSAN001082_18163
NZ_APAH01000369.1	Protein Homology	CDS	8711	10495	.	-	0	ID=cds-WP_023254711.1;Parent=gene-CFSAN001082_RS41750;Dbxref=GenBank:WP_023254711.1;Name=WP_023254711.1;Ontology_term=GO:0005992,GO:0033942;gbkey=CDS;gene=treZ;go_function=4-alpha-D-(1->4)-alpha-D-glucanotrehalose trehalohydrolase activity|0033942||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460519.1;locus_tag=CFSAN001082_RS41750;product=malto-oligosyltrehalose trehalohydrolase;protein_id=WP_023254711.1;transl_table=11
NZ_APAH01000369.1	RefSeq	gene	10624	11409	.	-	.	ID=gene-CFSAN001082_RS41755;Name=CFSAN001082_RS41755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41755;old_locus_tag=CFSAN001082_18168
NZ_APAH01000369.1	Protein Homology	CDS	10624	11409	.	-	0	ID=cds-WP_000698596.1;Parent=gene-CFSAN001082_RS41755;Dbxref=GenBank:WP_000698596.1;Name=WP_000698596.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460520.1;locus_tag=CFSAN001082_RS41755;product=OBAP family protein;protein_id=WP_000698596.1;transl_table=11
NZ_APAH01000369.1	RefSeq	gene	11552	11881	.	-	.	ID=gene-CFSAN001082_RS41760;Name=hdeB;gbkey=Gene;gene=hdeB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41760;old_locus_tag=CFSAN001082_18173
NZ_APAH01000369.1	Protein Homology	CDS	11552	11881	.	-	0	ID=cds-WP_001032161.1;Parent=gene-CFSAN001082_RS41760;Dbxref=GenBank:WP_001032161.1;Name=WP_001032161.1;gbkey=CDS;gene=hdeB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460521.1;locus_tag=CFSAN001082_RS41760;product=acid-activated periplasmic chaperone HdeB;protein_id=WP_001032161.1;transl_table=11
NZ_APAH01000369.1	RefSeq	gene	12233	12664	.	-	.	ID=gene-CFSAN001082_RS41765;Name=CFSAN001082_RS41765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41765;old_locus_tag=CFSAN001082_18178
NZ_APAH01000369.1	Protein Homology	CDS	12233	12664	.	-	0	ID=cds-WP_000152297.1;Parent=gene-CFSAN001082_RS41765;Dbxref=GenBank:WP_000152297.1;Name=WP_000152297.1;Ontology_term=GO:0006972,GO:0006979,GO:0033194,GO:0004601,GO:0051920,GO:0005829;gbkey=CDS;go_component=cytosol|0005829||IEA;go_function=peroxidase activity|0004601||IEA,peroxiredoxin activity|0051920||IEA;go_process=hyperosmotic response|0006972||IEA,response to oxidative stress|0006979||IEA,response to hydroperoxide|0033194||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460522.1;locus_tag=CFSAN001082_RS41765;product=OsmC family protein;protein_id=WP_000152297.1;transl_table=11
##sequence-region NZ_APAH01000370.1 1 3409
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000370.1	RefSeq	region	1	3409	.	+	.	ID=NZ_APAH01000370.1:1..3409;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000370.1	RefSeq	gene	101	589	.	-	.	ID=gene-CFSAN001082_RS41770;Name=CFSAN001082_RS41770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41770;old_locus_tag=CFSAN001082_18183
NZ_APAH01000370.1	Protein Homology	CDS	101	589	.	-	0	ID=cds-WP_023223899.1;Parent=gene-CFSAN001082_RS41770;Dbxref=GenBank:WP_023223899.1;Name=WP_023223899.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460507.1;locus_tag=CFSAN001082_RS41770;product=MarR family winged helix-turn-helix transcriptional regulator;protein_id=WP_023223899.1;transl_table=11
NZ_APAH01000370.1	RefSeq	gene	634	2142	.	+	.	ID=gene-CFSAN001082_RS41775;Name=CFSAN001082_RS41775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41775;old_locus_tag=CFSAN001082_18188
NZ_APAH01000370.1	Protein Homology	CDS	634	2142	.	+	0	ID=cds-WP_023254712.1;Parent=gene-CFSAN001082_RS41775;Dbxref=GenBank:WP_023254712.1;Name=WP_023254712.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460506.1;locus_tag=CFSAN001082_RS41775;product=FAD-dependent oxidoreductase;protein_id=WP_023254712.1;transl_table=11
NZ_APAH01000370.1	RefSeq	gene	2132	3373	.	+	.	ID=gene-CFSAN001082_RS41780;Name=CFSAN001082_RS41780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41780;old_locus_tag=CFSAN001082_18193
NZ_APAH01000370.1	Protein Homology	CDS	2132	3373	.	+	0	ID=cds-WP_023254713.1;Parent=gene-CFSAN001082_RS41780;Dbxref=GenBank:WP_023254713.1;Name=WP_023254713.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460505.1;locus_tag=CFSAN001082_RS41780;product=MFS transporter;protein_id=WP_023254713.1;transl_table=11
##sequence-region NZ_APAH01000371.1 1 24087
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000371.1	RefSeq	region	1	24087	.	+	.	ID=NZ_APAH01000371.1:1..24087;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000371.1	RefSeq	pseudogene	19	192	.	-	.	ID=gene-CFSAN001082_RS0123845;Name=CFSAN001082_RS0123845;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0123845;pseudo=true
NZ_APAH01000371.1	Protein Homology	CDS	19	192	.	-	0	ID=cds-CFSAN001082_RS0123845;Parent=gene-CFSAN001082_RS0123845;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_447236.1;locus_tag=CFSAN001082_RS0123845;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	500	2521	.	-	.	ID=gene-CFSAN001082_RS41785;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41785;old_locus_tag=CFSAN001082_18198
NZ_APAH01000371.1	Protein Homology	CDS	500	2521	.	-	0	ID=cds-WP_000042502.1;Parent=gene-CFSAN001082_RS41785;Dbxref=GenBank:WP_000042502.1;Name=WP_000042502.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887,GO:0009380;gbkey=CDS;gene=uvrB;go_component=excinuclease repair complex|0009380||IEA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123745.1;locus_tag=CFSAN001082_RS41785;product=excinuclease ABC subunit UvrB;protein_id=WP_000042502.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	3172	3858	.	-	.	ID=gene-CFSAN001082_RS41790;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41790;old_locus_tag=CFSAN001082_18203
NZ_APAH01000371.1	Protein Homology	CDS	3172	3858	.	-	0	ID=cds-WP_001648455.1;Parent=gene-CFSAN001082_RS41790;Dbxref=GenBank:WP_001648455.1;Name=WP_001648455.1;Ontology_term=GO:0009102,GO:0000287,GO:0004141,GO:0005524;gbkey=CDS;gene=bioD;go_function=magnesium ion binding|0000287||IEA,dethiobiotin synthase activity|0004141||IEA,ATP binding|0005524||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459775.1;locus_tag=CFSAN001082_RS41790;product=dethiobiotin synthase;protein_id=WP_001648455.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	3851	4606	.	-	.	ID=gene-CFSAN001082_RS41795;Name=bioC;gbkey=Gene;gene=bioC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41795;old_locus_tag=CFSAN001082_18208
NZ_APAH01000371.1	Protein Homology	CDS	3851	4606	.	-	0	ID=cds-WP_000079911.1;Parent=gene-CFSAN001082_RS41795;Dbxref=GenBank:WP_000079911.1;Name=WP_000079911.1;Ontology_term=GO:0009102,GO:0010340;gbkey=CDS;gene=bioC;go_function=carboxyl-O-methyltransferase activity|0010340||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459774.1;locus_tag=CFSAN001082_RS41795;product=malonyl-ACP O-methyltransferase BioC;protein_id=WP_000079911.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	4590	5747	.	-	.	ID=gene-CFSAN001082_RS41800;Name=bioF;gbkey=Gene;gene=bioF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41800;old_locus_tag=CFSAN001082_18213
NZ_APAH01000371.1	Protein Homology	CDS	4590	5747	.	-	0	ID=cds-WP_023254714.1;Parent=gene-CFSAN001082_RS41800;Dbxref=GenBank:WP_023254714.1;Name=WP_023254714.1;Ontology_term=GO:0009102,GO:0008710;gbkey=CDS;gene=bioF;go_function=8-amino-7-oxononanoate synthase activity|0008710||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459773.1;locus_tag=CFSAN001082_RS41800;product=8-amino-7-oxononanoate synthase;protein_id=WP_023254714.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	5744	6784	.	-	.	ID=gene-CFSAN001082_RS41805;Name=bioB;gbkey=Gene;gene=bioB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41805;old_locus_tag=CFSAN001082_18218
NZ_APAH01000371.1	Protein Homology	CDS	5744	6784	.	-	0	ID=cds-WP_000090727.1;Parent=gene-CFSAN001082_RS41805;Dbxref=GenBank:WP_000090727.1;Name=WP_000090727.1;Ontology_term=GO:0009102,GO:0004076,GO:0051536,GO:1904047;gbkey=CDS;gene=bioB;go_function=biotin synthase activity|0004076||IEA,iron-sulfur cluster binding|0051536||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459772.1;locus_tag=CFSAN001082_RS41805;product=biotin synthase BioB;protein_id=WP_000090727.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	6871	8160	.	+	.	ID=gene-CFSAN001082_RS41810;Name=bioA;gbkey=Gene;gene=bioA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41810;old_locus_tag=CFSAN001082_18223
NZ_APAH01000371.1	Protein Homology	CDS	6871	8160	.	+	0	ID=cds-WP_023254715.1;Parent=gene-CFSAN001082_RS41810;Dbxref=GenBank:WP_023254715.1;Name=WP_023254715.1;Ontology_term=GO:0009102,GO:0004015,GO:0030170;gbkey=CDS;gene=bioA;go_function=adenosylmethionine-8-amino-7-oxononanoate transaminase activity|0004015||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459771.1;locus_tag=CFSAN001082_RS41810;product=adenosylmethionine--8-amino-7-oxononanoate transaminase;protein_id=WP_023254715.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	8218	8694	.	+	.	ID=gene-CFSAN001082_RS41815;Name=CFSAN001082_RS41815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41815;old_locus_tag=CFSAN001082_18228
NZ_APAH01000371.1	Protein Homology	CDS	8218	8694	.	+	0	ID=cds-WP_000767403.1;Parent=gene-CFSAN001082_RS41815;Dbxref=GenBank:WP_000767403.1;Name=WP_000767403.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459770.1;locus_tag=CFSAN001082_RS41815;product=kinase inhibitor;protein_id=WP_000767403.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	8779	10299	.	-	.	ID=gene-CFSAN001082_RS41820;Name=hutH;gbkey=Gene;gene=hutH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41820;old_locus_tag=CFSAN001082_18233
NZ_APAH01000371.1	Protein Homology	CDS	8779	10299	.	-	0	ID=cds-WP_023254716.1;Parent=gene-CFSAN001082_RS41820;Dbxref=GenBank:WP_023254716.1;Name=WP_023254716.1;Ontology_term=GO:0006548,GO:0004397,GO:0005737;gbkey=CDS;gene=hutH;go_component=cytoplasm|0005737||IEA;go_function=histidine ammonia-lyase activity|0004397||IEA;go_process=L-histidine catabolic process|0006548||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459769.1;locus_tag=CFSAN001082_RS41820;product=histidine ammonia-lyase;protein_id=WP_023254716.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	10301	11986	.	-	.	ID=gene-CFSAN001082_RS41825;Name=hutU;gbkey=Gene;gene=hutU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41825;old_locus_tag=CFSAN001082_18238
NZ_APAH01000371.1	Protein Homology	CDS	10301	11986	.	-	0	ID=cds-WP_001115209.1;Parent=gene-CFSAN001082_RS41825;Dbxref=GenBank:WP_001115209.1;Name=WP_001115209.1;Ontology_term=GO:0006548,GO:0016153;gbkey=CDS;gene=hutU;go_function=urocanate hydratase activity|0016153||IEA;go_process=L-histidine catabolic process|0006548||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441920.1;locus_tag=CFSAN001082_RS41825;product=urocanate hydratase;protein_id=WP_001115209.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	12183	12908	.	-	.	ID=gene-CFSAN001082_RS41830;Name=CFSAN001082_RS41830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41830;old_locus_tag=CFSAN001082_18243
NZ_APAH01000371.1	Protein Homology	CDS	12183	12908	.	-	0	ID=cds-WP_023254717.1;Parent=gene-CFSAN001082_RS41830;Dbxref=GenBank:WP_023254717.1;Name=WP_023254717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459768.1;locus_tag=CFSAN001082_RS41830;product=histidine utilization repressor;protein_id=WP_023254717.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	12953	13894	.	-	.	ID=gene-CFSAN001082_RS41835;Name=hutG;gbkey=Gene;gene=hutG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41835;old_locus_tag=CFSAN001082_18248
NZ_APAH01000371.1	Protein Homology	CDS	12953	13894	.	-	0	ID=cds-WP_023254718.1;Parent=gene-CFSAN001082_RS41835;Dbxref=GenBank:WP_023254718.1;Name=WP_023254718.1;Ontology_term=GO:0019556,GO:0050415;gbkey=CDS;gene=hutG;go_function=formimidoylglutamase activity|0050415||IEA;go_process=L-histidine catabolic process to glutamate and formamide|0019556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459767.1;locus_tag=CFSAN001082_RS41835;product=formimidoylglutamase;protein_id=WP_023254718.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	13891	15114	.	-	.	ID=gene-CFSAN001082_RS41840;Name=hutI;gbkey=Gene;gene=hutI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41840;old_locus_tag=CFSAN001082_18253
NZ_APAH01000371.1	Protein Homology	CDS	13891	15114	.	-	0	ID=cds-WP_023254719.1;Parent=gene-CFSAN001082_RS41840;Dbxref=GenBank:WP_023254719.1;Name=WP_023254719.1;Ontology_term=GO:0019556,GO:0016812,GO:0050480,GO:0005737;gbkey=CDS;gene=hutI;go_component=cytoplasm|0005737||IEA;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in cyclic amides|0016812||IEA,imidazolonepropionase activity|0050480||IEA;go_process=L-histidine catabolic process to glutamate and formamide|0019556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459766.1;locus_tag=CFSAN001082_RS41840;product=imidazolonepropionase;protein_id=WP_023254719.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	15352	16635	.	+	.	ID=gene-CFSAN001082_RS41845;Name=CFSAN001082_RS41845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41845;old_locus_tag=CFSAN001082_18258
NZ_APAH01000371.1	Protein Homology	CDS	15352	16635	.	+	0	ID=cds-WP_001094776.1;Parent=gene-CFSAN001082_RS41845;Dbxref=GenBank:WP_001094776.1;Name=WP_001094776.1;Ontology_term=GO:0042545,GO:0030599;gbkey=CDS;go_function=pectinesterase activity|0030599||IEA;go_process=cell wall modification|0042545||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459765.1;locus_tag=CFSAN001082_RS41845;product=putative acyl-CoA thioester hydrolase;protein_id=WP_001094776.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	16779	17774	.	-	.	ID=gene-CFSAN001082_RS41850;Name=pgl;gbkey=Gene;gene=pgl;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41850;old_locus_tag=CFSAN001082_18263
NZ_APAH01000371.1	Protein Homology	CDS	16779	17774	.	-	0	ID=cds-WP_000815468.1;Parent=gene-CFSAN001082_RS41850;Dbxref=GenBank:WP_000815468.1;Name=WP_000815468.1;Ontology_term=GO:0017057;gbkey=CDS;gene=pgl;go_function=6-phosphogluconolactonase activity|0017057||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459764.1;locus_tag=CFSAN001082_RS41850;product=6-phosphogluconolactonase;protein_id=WP_000815468.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	17938	18756	.	+	.	ID=gene-CFSAN001082_RS41855;Name=CFSAN001082_RS41855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41855;old_locus_tag=CFSAN001082_18268
NZ_APAH01000371.1	Protein Homology	CDS	17938	18756	.	+	0	ID=cds-WP_000127031.1;Parent=gene-CFSAN001082_RS41855;Dbxref=GenBank:WP_000127031.1;Name=WP_000127031.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459763.1;locus_tag=CFSAN001082_RS41855;product=pyridoxal phosphatase;protein_id=WP_000127031.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	18757	19815	.	-	.	ID=gene-CFSAN001082_RS41860;Name=modC;gbkey=Gene;gene=modC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41860;old_locus_tag=CFSAN001082_18273
NZ_APAH01000371.1	Protein Homology	CDS	18757	19815	.	-	0	ID=cds-WP_000891710.1;Parent=gene-CFSAN001082_RS41860;Dbxref=GenBank:WP_000891710.1;Name=WP_000891710.1;Ontology_term=GO:0015689,GO:0005524,GO:0015098,GO:0016020;gbkey=CDS;gene=modC;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,molybdate ion transmembrane transporter activity|0015098||IEA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459762.1;locus_tag=CFSAN001082_RS41860;product=molybdenum ABC transporter ATP-binding protein ModC;protein_id=WP_000891710.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	19818	20507	.	-	.	ID=gene-CFSAN001082_RS41865;Name=modB;gbkey=Gene;gene=modB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41865;old_locus_tag=CFSAN001082_18278
NZ_APAH01000371.1	Protein Homology	CDS	19818	20507	.	-	0	ID=cds-WP_000604026.1;Parent=gene-CFSAN001082_RS41865;Dbxref=GenBank:WP_000604026.1;Name=WP_000604026.1;Ontology_term=GO:0015689,GO:0015098,GO:0016020;gbkey=CDS;gene=modB;go_component=membrane|0016020||IEA;go_function=molybdate ion transmembrane transporter activity|0015098||IEA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459761.1;locus_tag=CFSAN001082_RS41865;product=molybdate ABC transporter permease subunit;protein_id=WP_000604026.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	20507	21280	.	-	.	ID=gene-CFSAN001082_RS41870;Name=modA;gbkey=Gene;gene=modA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41870;old_locus_tag=CFSAN001082_18283
NZ_APAH01000371.1	Protein Homology	CDS	20507	21280	.	-	0	ID=cds-WP_000951416.1;Parent=gene-CFSAN001082_RS41870;Dbxref=GenBank:WP_000951416.1;Name=WP_000951416.1;Ontology_term=GO:0015689;gbkey=CDS;gene=modA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459760.1;locus_tag=CFSAN001082_RS41870;product=molybdate ABC transporter substrate-binding protein;protein_id=WP_000951416.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	21447	21596	.	-	.	ID=gene-CFSAN001082_RS41875;Name=CFSAN001082_RS41875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41875;old_locus_tag=CFSAN001082_18288
NZ_APAH01000371.1	Protein Homology	CDS	21447	21596	.	-	0	ID=cds-WP_000891513.1;Parent=gene-CFSAN001082_RS41875;Dbxref=GenBank:WP_000891513.1;Name=WP_000891513.1;Ontology_term=GO:1990961,GO:0042910,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459759.1;locus_tag=CFSAN001082_RS41875;product=AcrZ family multidrug efflux pump-associated protein;protein_id=WP_000891513.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	21725	22513	.	+	.	ID=gene-CFSAN001082_RS41880;Name=modE;gbkey=Gene;gene=modE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41880;old_locus_tag=CFSAN001082_18293
NZ_APAH01000371.1	Protein Homology	CDS	21725	22513	.	+	0	ID=cds-WP_001147418.1;Parent=gene-CFSAN001082_RS41880;Dbxref=GenBank:WP_001147418.1;Name=WP_001147418.1;Ontology_term=GO:0006355,GO:0015689,GO:0003700,GO:0030151;gbkey=CDS;gene=modE;go_function=DNA-binding transcription factor activity|0003700||IEA,molybdenum ion binding|0030151||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459758.1;locus_tag=CFSAN001082_RS41880;product=molybdenum-dependent transcriptional regulator;protein_id=WP_001147418.1;transl_table=11
NZ_APAH01000371.1	RefSeq	gene	22581	24056	.	+	.	ID=gene-CFSAN001082_RS41885;Name=modF;gbkey=Gene;gene=modF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41885;old_locus_tag=CFSAN001082_18298
NZ_APAH01000371.1	Protein Homology	CDS	22581	24056	.	+	0	ID=cds-WP_023254720.1;Parent=gene-CFSAN001082_RS41885;Dbxref=GenBank:WP_023254720.1;Name=WP_023254720.1;Ontology_term=GO:0005524;gbkey=CDS;gene=modF;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459757.1;locus_tag=CFSAN001082_RS41885;product=molybdate ABC transporter ATP-binding protein ModF;protein_id=WP_023254720.1;transl_table=11
##sequence-region NZ_APAH01000372.1 1 2394
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000372.1	RefSeq	region	1	2394	.	+	.	ID=NZ_APAH01000372.1:1..2394;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000372.1	RefSeq	gene	128	310	.	-	.	ID=gene-CFSAN001082_RS41890;Name=CFSAN001082_RS41890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41890;old_locus_tag=CFSAN001082_18303
NZ_APAH01000372.1	Protein Homology	CDS	128	310	.	-	0	ID=cds-WP_000513733.1;Parent=gene-CFSAN001082_RS41890;Dbxref=GenBank:WP_000513733.1;Name=WP_000513733.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460238.1;locus_tag=CFSAN001082_RS41890;product=DUF1869 domain-containing protein;protein_id=WP_000513733.1;transl_table=11
NZ_APAH01000372.1	RefSeq	gene	313	675	.	-	.	ID=gene-CFSAN001082_RS41895;Name=yeaR;gbkey=Gene;gene=yeaR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41895;old_locus_tag=CFSAN001082_18308
NZ_APAH01000372.1	Protein Homology	CDS	313	675	.	-	0	ID=cds-WP_001248993.1;Parent=gene-CFSAN001082_RS41895;Dbxref=GenBank:WP_001248993.1;Name=WP_001248993.1;gbkey=CDS;gene=yeaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460237.1;locus_tag=CFSAN001082_RS41895;product=DUF1971 domain-containing protein YeaR;protein_id=WP_001248993.1;transl_table=11
NZ_APAH01000372.1	RefSeq	gene	848	1486	.	-	.	ID=gene-CFSAN001082_RS41900;Name=leuE;gbkey=Gene;gene=leuE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41900;old_locus_tag=CFSAN001082_18313
NZ_APAH01000372.1	Protein Homology	CDS	848	1486	.	-	0	ID=cds-WP_023254721.1;Parent=gene-CFSAN001082_RS41900;Dbxref=GenBank:WP_023254721.1;Name=WP_023254721.1;Ontology_term=GO:0006865;gbkey=CDS;gene=leuE;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460236.1;locus_tag=CFSAN001082_RS41900;product=leucine efflux protein LeuE;protein_id=WP_023254721.1;transl_table=11
NZ_APAH01000372.1	RefSeq	gene	1682	2227	.	-	.	ID=gene-CFSAN001082_RS41905;Name=CFSAN001082_RS41905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41905;old_locus_tag=CFSAN001082_18318
NZ_APAH01000372.1	Protein Homology	CDS	1682	2227	.	-	0	ID=cds-WP_023254722.1;Parent=gene-CFSAN001082_RS41905;Dbxref=GenBank:WP_023254722.1;Name=WP_023254722.1;Ontology_term=GO:0046417;gbkey=CDS;go_process=chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460235.1;locus_tag=CFSAN001082_RS41905;product=chorismate mutase;protein_id=WP_023254722.1;transl_table=11
##sequence-region NZ_APAH01000373.1 1 717
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000373.1	RefSeq	region	1	717	.	+	.	ID=NZ_APAH01000373.1:1..717;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000373.1	RefSeq	gene	1	717	.	-	.	ID=gene-CFSAN001082_RS41910;Name=CFSAN001082_RS41910;end_range=717,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41910;old_locus_tag=CFSAN001082_18323;partial=true;start_range=.,1
NZ_APAH01000373.1	Protein Homology	CDS	1	717	.	-	0	ID=cds-WP_023254723.1;Parent=gene-CFSAN001082_RS41910;Dbxref=GenBank:WP_023254723.1;Name=WP_023254723.1;end_range=717,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001539513.1;locus_tag=CFSAN001082_RS41910;partial=true;product=LysR family transcriptional regulator substrate-binding protein;protein_id=WP_023254723.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000374.1 1 231
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000374.1	RefSeq	region	1	231	.	+	.	ID=NZ_APAH01000374.1:1..231;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000374.1	RefSeq	gene	1	231	.	+	.	ID=gene-CFSAN001082_RS41915;Name=CFSAN001082_RS41915;end_range=231,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41915;old_locus_tag=CFSAN001082_18328;partial=true;start_range=.,1
NZ_APAH01000374.1	Protein Homology	CDS	1	231	.	+	1	ID=cds-WP_023254724.1;Parent=gene-CFSAN001082_RS41915;Dbxref=GenBank:WP_023254724.1;Name=WP_023254724.1;end_range=231,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835222.1;locus_tag=CFSAN001082_RS41915;partial=true;product=DUF4765 family protein;protein_id=WP_023254724.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000375.1 1 7312
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000375.1	RefSeq	region	1	7312	.	+	.	ID=NZ_APAH01000375.1:1..7312;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000375.1	RefSeq	gene	1	448	.	+	.	ID=gene-CFSAN001082_RS41920;Name=CFSAN001082_RS41920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41920;old_locus_tag=CFSAN001082_18333;partial=true;start_range=.,1
NZ_APAH01000375.1	Protein Homology	CDS	1	448	.	+	1	ID=cds-WP_023254725.1;Parent=gene-CFSAN001082_RS41920;Dbxref=GenBank:WP_023254725.1;Name=WP_023254725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459076.1;locus_tag=CFSAN001082_RS41920;partial=true;product=AMP-binding enzyme;protein_id=WP_023254725.1;start_range=.,1;transl_table=11
NZ_APAH01000375.1	RefSeq	gene	502	1287	.	+	.	ID=gene-CFSAN001082_RS41925;Name=caiD;gbkey=Gene;gene=caiD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41925;old_locus_tag=CFSAN001082_18338
NZ_APAH01000375.1	Protein Homology	CDS	502	1287	.	+	0	ID=cds-WP_000004385.1;Parent=gene-CFSAN001082_RS41925;Dbxref=GenBank:WP_000004385.1;Name=WP_000004385.1;Ontology_term=GO:0016836;gbkey=CDS;gene=caiD;go_function=hydro-lyase activity|0016836||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459075.1;locus_tag=CFSAN001082_RS41925;product=crotonobetainyl-CoA hydratase;protein_id=WP_000004385.1;transl_table=11
NZ_APAH01000375.1	RefSeq	gene	1397	1993	.	+	.	ID=gene-CFSAN001082_RS41930;Name=caiE;gbkey=Gene;gene=caiE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41930;old_locus_tag=CFSAN001082_18343
NZ_APAH01000375.1	Protein Homology	CDS	1397	1993	.	+	0	ID=cds-WP_000122864.1;Parent=gene-CFSAN001082_RS41930;Dbxref=GenBank:WP_000122864.1;Name=WP_000122864.1;gbkey=CDS;gene=caiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459074.1;locus_tag=CFSAN001082_RS41930;product=carnitine operon protein CaiE;protein_id=WP_000122864.1;transl_table=11
NZ_APAH01000375.1	RefSeq	gene	2071	2466	.	-	.	ID=gene-CFSAN001082_RS41935;Name=caiF;gbkey=Gene;gene=caiF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41935;old_locus_tag=CFSAN001082_18348
NZ_APAH01000375.1	Protein Homology	CDS	2071	2466	.	-	0	ID=cds-WP_000333324.1;Parent=gene-CFSAN001082_RS41935;Dbxref=GenBank:WP_000333324.1;Name=WP_000333324.1;gbkey=CDS;gene=caiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459073.1;locus_tag=CFSAN001082_RS41935;product=carnitine metabolism transcriptional regulator CaiF;protein_id=WP_000333324.1;transl_table=11
NZ_APAH01000375.1	RefSeq	gene	2740	5967	.	-	.	ID=gene-CFSAN001082_RS41940;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41940;old_locus_tag=CFSAN001082_18353
NZ_APAH01000375.1	Protein Homology	CDS	2740	5967	.	-	0	ID=cds-WP_023254726.1;Parent=gene-CFSAN001082_RS41940;Dbxref=GenBank:WP_023254726.1;Name=WP_023254726.1;Ontology_term=GO:0008152,GO:0005524,GO:0046872;gbkey=CDS;gene=carB;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459072.1;locus_tag=CFSAN001082_RS41940;product=carbamoyl-phosphate synthase large subunit;protein_id=WP_023254726.1;transl_table=11
NZ_APAH01000375.1	RefSeq	gene	5986	7134	.	-	.	ID=gene-CFSAN001082_RS41945;Name=carA;gbkey=Gene;gene=carA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41945;old_locus_tag=CFSAN001082_18358
NZ_APAH01000375.1	Protein Homology	CDS	5986	7134	.	-	0	ID=cds-WP_023254727.1;Parent=gene-CFSAN001082_RS41945;Dbxref=GenBank:WP_023254727.1;Name=WP_023254727.1;Ontology_term=GO:0006207,GO:0006541,GO:0004088;gbkey=CDS;gene=carA;go_function=carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|0004088||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459071.1;locus_tag=CFSAN001082_RS41945;product=glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit;protein_id=WP_023254727.1;transl_table=11
##sequence-region NZ_APAH01000376.1 1 14148
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000376.1	RefSeq	region	1	14148	.	+	.	ID=NZ_APAH01000376.1:1..14148;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000376.1	RefSeq	gene	103	1203	.	+	.	ID=gene-CFSAN001082_RS41950;Name=chaA;gbkey=Gene;gene=chaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41950;old_locus_tag=CFSAN001082_18363
NZ_APAH01000376.1	Protein Homology	CDS	103	1203	.	+	0	ID=cds-WP_000148418.1;Parent=gene-CFSAN001082_RS41950;Dbxref=GenBank:WP_000148418.1;Name=WP_000148418.1;gbkey=CDS;gene=chaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460727.1;locus_tag=CFSAN001082_RS41950;product=sodium-potassium/proton antiporter ChaA;protein_id=WP_000148418.1;transl_table=11
NZ_APAH01000376.1	RefSeq	gene	1257	2111	.	-	.	ID=gene-CFSAN001082_RS41955;Name=kdsA;gbkey=Gene;gene=kdsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41955;old_locus_tag=CFSAN001082_18368
NZ_APAH01000376.1	Protein Homology	CDS	1257	2111	.	-	0	ID=cds-WP_000811046.1;Parent=gene-CFSAN001082_RS41955;Dbxref=GenBank:WP_000811046.1;Name=WP_000811046.1;Ontology_term=GO:0008676;gbkey=CDS;gene=kdsA;go_function=3-deoxy-8-phosphooctulonate synthase activity|0008676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460728.1;locus_tag=CFSAN001082_RS41955;product=3-deoxy-8-phosphooctulonate synthase;protein_id=WP_000811046.1;transl_table=11
NZ_APAH01000376.1	RefSeq	gene	2149	2958	.	-	.	ID=gene-CFSAN001082_RS41960;Name=sirB1;gbkey=Gene;gene=sirB1;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41960;old_locus_tag=CFSAN001082_18373
NZ_APAH01000376.1	Protein Homology	CDS	2149	2958	.	-	0	ID=cds-WP_001257065.1;Parent=gene-CFSAN001082_RS41960;Dbxref=GenBank:WP_001257065.1;Name=WP_001257065.1;gbkey=CDS;gene=sirB1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460729.1;locus_tag=CFSAN001082_RS41960;product=invasion regulator SirB1;protein_id=WP_001257065.1;transl_table=11
NZ_APAH01000376.1	RefSeq	gene	2962	3351	.	-	.	ID=gene-CFSAN001082_RS41965;Name=sirB2;gbkey=Gene;gene=sirB2;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41965;old_locus_tag=CFSAN001082_18378
NZ_APAH01000376.1	Protein Homology	CDS	2962	3351	.	-	0	ID=cds-WP_023138854.1;Parent=gene-CFSAN001082_RS41965;Dbxref=GenBank:WP_023138854.1;Name=WP_023138854.1;gbkey=CDS;gene=sirB2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460730.1;locus_tag=CFSAN001082_RS41965;product=invasion regulator SirB2;protein_id=WP_023138854.1;transl_table=11
NZ_APAH01000376.1	RefSeq	gene	3348	4181	.	-	.	ID=gene-CFSAN001082_RS41970;Name=prmC;gbkey=Gene;gene=prmC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41970;old_locus_tag=CFSAN001082_18383
NZ_APAH01000376.1	Protein Homology	CDS	3348	4181	.	-	0	ID=cds-WP_023254728.1;Parent=gene-CFSAN001082_RS41970;Dbxref=GenBank:WP_023254728.1;Name=WP_023254728.1;Ontology_term=GO:0006412,GO:0018364,GO:0008757;gbkey=CDS;gene=prmC;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=translation|0006412||IEA,peptidyl-glutamine methylation|0018364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460731.1;locus_tag=CFSAN001082_RS41970;product=peptide chain release factor N(5)-glutamine methyltransferase;protein_id=WP_023254728.1;transl_table=11
NZ_APAH01000376.1	RefSeq	gene	4181	5263	.	-	.	ID=gene-CFSAN001082_RS41975;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41975;old_locus_tag=CFSAN001082_18388
NZ_APAH01000376.1	Protein Homology	CDS	4181	5263	.	-	0	ID=cds-WP_000804703.1;Parent=gene-CFSAN001082_RS41975;Dbxref=GenBank:WP_000804703.1;Name=WP_000804703.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=prfA;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012132158.1;locus_tag=CFSAN001082_RS41975;product=peptide chain release factor 1;protein_id=WP_000804703.1;transl_table=11
NZ_APAH01000376.1	RefSeq	gene	5304	6560	.	-	.	ID=gene-CFSAN001082_RS41980;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41980;old_locus_tag=CFSAN001082_18393
NZ_APAH01000376.1	Protein Homology	CDS	5304	6560	.	-	0	ID=cds-WP_000173208.1;Parent=gene-CFSAN001082_RS41980;Dbxref=GenBank:WP_000173208.1;Name=WP_000173208.1;Ontology_term=GO:0008883,GO:0050661;gbkey=CDS;gene=hemA;go_function=glutamyl-tRNA reductase activity|0008883||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041689438.1;locus_tag=CFSAN001082_RS41980;product=glutamyl-tRNA reductase;protein_id=WP_000173208.1;transl_table=11
NZ_APAH01000376.1	RefSeq	gene	6874	7497	.	+	.	ID=gene-CFSAN001082_RS41985;Name=lolB;gbkey=Gene;gene=lolB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41985;old_locus_tag=CFSAN001082_18403
NZ_APAH01000376.1	Protein Homology	CDS	6874	7497	.	+	0	ID=cds-WP_000174484.1;Parent=gene-CFSAN001082_RS41985;Dbxref=GenBank:WP_000174484.1;Name=WP_000174484.1;Ontology_term=GO:0015031,GO:0009279;gbkey=CDS;gene=lolB;go_component=cell outer membrane|0009279||IEA;go_process=protein transport|0015031||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460734.1;locus_tag=CFSAN001082_RS41985;product=lipoprotein insertase outer membrane protein LolB;protein_id=WP_000174484.1;transl_table=11
NZ_APAH01000376.1	RefSeq	gene	7494	8345	.	+	.	ID=gene-CFSAN001082_RS41990;Name=ispE;gbkey=Gene;gene=ispE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41990;old_locus_tag=CFSAN001082_18408
NZ_APAH01000376.1	Protein Homology	CDS	7494	8345	.	+	0	ID=cds-WP_000988260.1;Parent=gene-CFSAN001082_RS41990;Dbxref=GenBank:WP_000988260.1;Name=WP_000988260.1;Ontology_term=GO:0016114,GO:0050515;gbkey=CDS;gene=ispE;go_function=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity|0050515||IEA;go_process=terpenoid biosynthetic process|0016114||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460735.1;locus_tag=CFSAN001082_RS41990;product=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase;protein_id=WP_000988260.1;transl_table=11
NZ_APAH01000376.1	RefSeq	gene	8611	9558	.	+	.	ID=gene-CFSAN001082_RS41995;Name=prs;gbkey=Gene;gene=prs;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS41995;old_locus_tag=CFSAN001082_18413
NZ_APAH01000376.1	Protein Homology	CDS	8611	9558	.	+	0	ID=cds-WP_001518537.1;Parent=gene-CFSAN001082_RS41995;Dbxref=GenBank:WP_001518537.1;Name=WP_001518537.1;gbkey=CDS;gene=prs;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002910407.1;locus_tag=CFSAN001082_RS41995;product=ribose-phosphate diphosphokinase;protein_id=WP_001518537.1;transl_table=11
NZ_APAH01000376.1	RefSeq	gene	9683	11368	.	+	.	ID=gene-CFSAN001082_RS42000;Name=dauA;gbkey=Gene;gene=dauA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42000;old_locus_tag=CFSAN001082_18418
NZ_APAH01000376.1	Protein Homology	CDS	9683	11368	.	+	0	ID=cds-WP_001037188.1;Parent=gene-CFSAN001082_RS42000;Dbxref=GenBank:WP_001037188.1;Name=WP_001037188.1;gbkey=CDS;gene=dauA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001525165.1;locus_tag=CFSAN001082_RS42000;product=C4-dicarboxylic acid transporter DauA;protein_id=WP_001037188.1;transl_table=11
NZ_APAH01000376.1	RefSeq	gene	11413	11691	.	-	.	ID=gene-CFSAN001082_RS42005;Name=ychH;gbkey=Gene;gene=ychH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42005;old_locus_tag=CFSAN001082_18423
NZ_APAH01000376.1	Protein Homology	CDS	11413	11691	.	-	0	ID=cds-WP_000823878.1;Parent=gene-CFSAN001082_RS42005;Dbxref=GenBank:WP_000823878.1;Name=WP_000823878.1;gbkey=CDS;gene=ychH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460738.1;locus_tag=CFSAN001082_RS42005;product=stress-induced protein YchH;protein_id=WP_000823878.1;transl_table=11
NZ_APAH01000376.1	RefSeq	gene	11967	12551	.	+	.	ID=gene-CFSAN001082_RS42010;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42010;old_locus_tag=CFSAN001082_18428
NZ_APAH01000376.1	Protein Homology	CDS	11967	12551	.	+	0	ID=cds-WP_000985595.1;Parent=gene-CFSAN001082_RS42010;Dbxref=GenBank:WP_000985595.1;Name=WP_000985595.1;Ontology_term=GO:0004045;gbkey=CDS;gene=pth;go_function=aminoacyl-tRNA hydrolase activity|0004045||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002910438.1;locus_tag=CFSAN001082_RS42010;product=aminoacyl-tRNA hydrolase;protein_id=WP_000985595.1;transl_table=11
NZ_APAH01000376.1	RefSeq	gene	12668	13759	.	+	.	ID=gene-CFSAN001082_RS42015;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42015;old_locus_tag=CFSAN001082_18433
NZ_APAH01000376.1	Protein Homology	CDS	12668	13759	.	+	0	ID=cds-WP_000505850.1;Parent=gene-CFSAN001082_RS42015;Dbxref=GenBank:WP_000505850.1;Name=WP_000505850.1;Ontology_term=GO:0005524,GO:0005525,GO:0016887;gbkey=CDS;gene=ychF;go_function=ATP binding|0005524||IEA,GTP binding|0005525||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001538644.1;locus_tag=CFSAN001082_RS42015;product=redox-regulated ATPase YchF;protein_id=WP_000505850.1;transl_table=11
##sequence-region NZ_APAH01000377.1 1 5707
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000377.1	RefSeq	region	1	5707	.	+	.	ID=NZ_APAH01000377.1:1..5707;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000377.1	RefSeq	gene	1	807	.	+	.	ID=gene-CFSAN001082_RS42020;Name=CFSAN001082_RS42020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42020;old_locus_tag=CFSAN001082_18438;partial=true;start_range=.,1
NZ_APAH01000377.1	Protein Homology	CDS	1	807	.	+	0	ID=cds-WP_023254729.1;Parent=gene-CFSAN001082_RS42020;Dbxref=GenBank:WP_023254729.1;Name=WP_023254729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459492.1;locus_tag=CFSAN001082_RS42020;partial=true;product=lysozyme inhibitor LprI family protein;protein_id=WP_023254729.1;start_range=.,1;transl_table=11
NZ_APAH01000377.1	RefSeq	gene	893	1687	.	+	.	ID=gene-CFSAN001082_RS42025;Name=CFSAN001082_RS42025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42025;old_locus_tag=CFSAN001082_18443
NZ_APAH01000377.1	Protein Homology	CDS	893	1687	.	+	0	ID=cds-WP_023195372.1;Parent=gene-CFSAN001082_RS42025;Dbxref=GenBank:WP_023195372.1;Name=WP_023195372.1;Ontology_term=GO:0008233;gbkey=CDS;go_function=peptidase activity|0008233||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459491.1;locus_tag=CFSAN001082_RS42025;product=TraB/GumN family protein;protein_id=WP_023195372.1;transl_table=11
NZ_APAH01000377.1	RefSeq	gene	1889	2368	.	+	.	ID=gene-CFSAN001082_RS42030;Name=ybaK;gbkey=Gene;gene=ybaK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42030;old_locus_tag=CFSAN001082_18448
NZ_APAH01000377.1	Protein Homology	CDS	1889	2368	.	+	0	ID=cds-WP_000186616.1;Parent=gene-CFSAN001082_RS42030;Dbxref=GenBank:WP_000186616.1;Name=WP_000186616.1;Ontology_term=GO:0002161;gbkey=CDS;gene=ybaK;go_function=aminoacyl-tRNA editing activity|0002161||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006818871.1;locus_tag=CFSAN001082_RS42030;product=Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK;protein_id=WP_000186616.1;transl_table=11
NZ_APAH01000377.1	RefSeq	gene	2485	4137	.	-	.	ID=gene-CFSAN001082_RS42035;Name=ushA;gbkey=Gene;gene=ushA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42035;old_locus_tag=CFSAN001082_18453
NZ_APAH01000377.1	Protein Homology	CDS	2485	4137	.	-	0	ID=cds-WP_000670398.1;Parent=gene-CFSAN001082_RS42035;Dbxref=GenBank:WP_000670398.1;Name=WP_000670398.1;Ontology_term=GO:0009166,GO:0000166,GO:0016787,GO:0046872;gbkey=CDS;gene=ushA;go_function=nucleotide binding|0000166||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=nucleotide catabolic process|0009166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459489.1;locus_tag=CFSAN001082_RS42035;product=bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA;protein_id=WP_000670398.1;transl_table=11
NZ_APAH01000377.1	RefSeq	gene	4310	5530	.	+	.	ID=gene-CFSAN001082_RS42040;Name=CFSAN001082_RS42040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42040;old_locus_tag=CFSAN001082_18458
NZ_APAH01000377.1	Protein Homology	CDS	4310	5530	.	+	0	ID=cds-WP_001251593.1;Parent=gene-CFSAN001082_RS42040;Dbxref=GenBank:WP_001251593.1;Name=WP_001251593.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459488.1;locus_tag=CFSAN001082_RS42040;product=MFS transporter;protein_id=WP_001251593.1;transl_table=11
##sequence-region NZ_APAH01000378.1 1 7740
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000378.1	RefSeq	region	1	7740	.	+	.	ID=NZ_APAH01000378.1:1..7740;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000378.1	RefSeq	gene	131	2365	.	+	.	ID=gene-CFSAN001082_RS42045;Name=CFSAN001082_RS42045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42045;old_locus_tag=CFSAN001082_18468
NZ_APAH01000378.1	Protein Homology	CDS	131	2365	.	+	0	ID=cds-WP_023254730.1;Parent=gene-CFSAN001082_RS42045;Dbxref=GenBank:WP_023254730.1;Name=WP_023254730.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016505545.1;locus_tag=CFSAN001082_RS42045;product=type VI secretion system Vgr family protein;protein_id=WP_023254730.1;transl_table=11
NZ_APAH01000378.1	RefSeq	gene	2425	2883	.	+	.	ID=gene-CFSAN001082_RS42050;Name=CFSAN001082_RS42050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42050;old_locus_tag=CFSAN001082_18473
NZ_APAH01000378.1	Protein Homology	CDS	2425	2883	.	+	0	ID=cds-WP_023254731.1;Parent=gene-CFSAN001082_RS42050;Dbxref=GenBank:WP_023254731.1;Name=WP_023254731.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000186512.1;locus_tag=CFSAN001082_RS42050;product=DcrB-related protein;protein_id=WP_023254731.1;transl_table=11
NZ_APAH01000378.1	RefSeq	gene	2899	7578	.	+	.	ID=gene-CFSAN001082_RS48580;Name=CFSAN001082_RS48580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48580;old_locus_tag=CFSAN001082_18478
NZ_APAH01000378.1	Protein Homology	CDS	2899	7578	.	+	0	ID=cds-WP_023254732.1;Parent=gene-CFSAN001082_RS48580;Dbxref=GenBank:WP_023254732.1;Name=WP_023254732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016242640.1;locus_tag=CFSAN001082_RS48580;product=RHS repeat-associated core domain-containing protein;protein_id=WP_023254732.1;transl_table=11
##sequence-region NZ_APAH01000379.1 1 17572
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000379.1	RefSeq	region	1	17572	.	+	.	ID=NZ_APAH01000379.1:1..17572;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000379.1	RefSeq	gene	135	1127	.	+	.	ID=gene-CFSAN001082_RS42060;Name=asnA;gbkey=Gene;gene=asnA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42060;old_locus_tag=CFSAN001082_18483
NZ_APAH01000379.1	Protein Homology	CDS	135	1127	.	+	0	ID=cds-WP_000845123.1;Parent=gene-CFSAN001082_RS42060;Dbxref=GenBank:WP_000845123.1;Name=WP_000845123.1;Ontology_term=GO:0006529,GO:0004071,GO:0005737;gbkey=CDS;gene=asnA;go_component=cytoplasm|0005737||IEA;go_function=aspartate-ammonia ligase activity|0004071||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462776.1;locus_tag=CFSAN001082_RS42060;product=aspartate--ammonia ligase;protein_id=WP_000845123.1;transl_table=11
NZ_APAH01000379.1	RefSeq	gene	1132	2583	.	-	.	ID=gene-CFSAN001082_RS42065;Name=viaA;gbkey=Gene;gene=viaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42065;old_locus_tag=CFSAN001082_18488
NZ_APAH01000379.1	Protein Homology	CDS	1132	2583	.	-	0	ID=cds-WP_000956588.1;Parent=gene-CFSAN001082_RS42065;Dbxref=GenBank:WP_000956588.1;Name=WP_000956588.1;gbkey=CDS;gene=viaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312714.1;locus_tag=CFSAN001082_RS42065;product=ATPase RavA stimulator ViaA;protein_id=WP_000956588.1;transl_table=11
NZ_APAH01000379.1	RefSeq	gene	2577	4073	.	-	.	ID=gene-CFSAN001082_RS42070;Name=ravA;gbkey=Gene;gene=ravA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42070;old_locus_tag=CFSAN001082_18493
NZ_APAH01000379.1	Protein Homology	CDS	2577	4073	.	-	0	ID=cds-WP_017442063.1;Parent=gene-CFSAN001082_RS42070;Dbxref=GenBank:WP_017442063.1;Name=WP_017442063.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;gene=ravA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462778.1;locus_tag=CFSAN001082_RS42070;product=ATPase RavA;protein_id=WP_017442063.1;transl_table=11
NZ_APAH01000379.1	RefSeq	gene	4421	6289	.	+	.	ID=gene-CFSAN001082_RS42075;Name=kup;gbkey=Gene;gene=kup;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42075;old_locus_tag=CFSAN001082_18498
NZ_APAH01000379.1	Protein Homology	CDS	4421	6289	.	+	0	ID=cds-WP_000102338.1;Parent=gene-CFSAN001082_RS42075;Dbxref=GenBank:WP_000102338.1;Name=WP_000102338.1;Ontology_term=GO:0015079,GO:0016020;gbkey=CDS;gene=kup;go_component=membrane|0016020||IEA;go_function=potassium ion transmembrane transporter activity|0015079||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000102304.1;locus_tag=CFSAN001082_RS42075;product=low affinity potassium transporter Kup;protein_id=WP_000102338.1;transl_table=11
NZ_APAH01000379.1	RefSeq	gene	6506	6925	.	+	.	ID=gene-CFSAN001082_RS42080;Name=rbsD;gbkey=Gene;gene=rbsD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42080;old_locus_tag=CFSAN001082_18503
NZ_APAH01000379.1	Protein Homology	CDS	6506	6925	.	+	0	ID=cds-WP_023254733.1;Parent=gene-CFSAN001082_RS42080;Dbxref=GenBank:WP_023254733.1;Name=WP_023254733.1;Ontology_term=GO:0016872;gbkey=CDS;gene=rbsD;go_function=intramolecular lyase activity|0016872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462780.1;locus_tag=CFSAN001082_RS42080;product=D-ribose pyranase;protein_id=WP_023254733.1;transl_table=11
NZ_APAH01000379.1	RefSeq	gene	6933	8438	.	+	.	ID=gene-CFSAN001082_RS42085;Name=rbsA;gbkey=Gene;gene=rbsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42085;old_locus_tag=CFSAN001082_18508
NZ_APAH01000379.1	Protein Homology	CDS	6933	8438	.	+	0	ID=cds-WP_000339361.1;Parent=gene-CFSAN001082_RS42085;Dbxref=GenBank:WP_000339361.1;Name=WP_000339361.1;Ontology_term=GO:0005524;gbkey=CDS;gene=rbsA;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462781.1;locus_tag=CFSAN001082_RS42085;product=ribose ABC transporter ATP-binding protein RbsA;protein_id=WP_000339361.1;transl_table=11
NZ_APAH01000379.1	RefSeq	gene	8444	9409	.	+	.	ID=gene-CFSAN001082_RS42090;Name=rbsC;gbkey=Gene;gene=rbsC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42090;old_locus_tag=CFSAN001082_18513
NZ_APAH01000379.1	Protein Homology	CDS	8444	9409	.	+	0	ID=cds-WP_000211345.1;Parent=gene-CFSAN001082_RS42090;Dbxref=GenBank:WP_000211345.1;Name=WP_000211345.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=rbsC;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002882531.1;locus_tag=CFSAN001082_RS42090;product=ribose ABC transporter permease;protein_id=WP_000211345.1;transl_table=11
NZ_APAH01000379.1	RefSeq	gene	9434	10324	.	+	.	ID=gene-CFSAN001082_RS42095;Name=rbsB;gbkey=Gene;gene=rbsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42095;old_locus_tag=CFSAN001082_18518
NZ_APAH01000379.1	Protein Homology	CDS	9434	10324	.	+	0	ID=cds-WP_023254734.1;Parent=gene-CFSAN001082_RS42095;Dbxref=GenBank:WP_023254734.1;Name=WP_023254734.1;gbkey=CDS;gene=rbsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462783.1;locus_tag=CFSAN001082_RS42095;product=ribose ABC transporter substrate-binding protein RbsB;protein_id=WP_023254734.1;transl_table=11
NZ_APAH01000379.1	RefSeq	gene	10457	11386	.	+	.	ID=gene-CFSAN001082_RS42100;Name=rbsK;gbkey=Gene;gene=rbsK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42100;old_locus_tag=CFSAN001082_18523
NZ_APAH01000379.1	Protein Homology	CDS	10457	11386	.	+	0	ID=cds-WP_000844728.1;Parent=gene-CFSAN001082_RS42100;Dbxref=GenBank:WP_000844728.1;Name=WP_000844728.1;Ontology_term=GO:0006014,GO:0004747;gbkey=CDS;gene=rbsK;go_function=ribokinase activity|0004747||IEA;go_process=D-ribose metabolic process|0006014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462784.1;locus_tag=CFSAN001082_RS42100;product=ribokinase;protein_id=WP_000844728.1;transl_table=11
NZ_APAH01000379.1	RefSeq	gene	11390	12388	.	+	.	ID=gene-CFSAN001082_RS42105;Name=rbsR;gbkey=Gene;gene=rbsR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42105;old_locus_tag=CFSAN001082_18528
NZ_APAH01000379.1	Protein Homology	CDS	11390	12388	.	+	0	ID=cds-WP_000224495.1;Parent=gene-CFSAN001082_RS42105;Dbxref=GenBank:WP_000224495.1;Name=WP_000224495.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=rbsR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462785.1;locus_tag=CFSAN001082_RS42105;product=ribose operon transcriptional repressor RbsR;protein_id=WP_000224495.1;transl_table=11
NZ_APAH01000379.1	RefSeq	gene	12354	13781	.	-	.	ID=gene-CFSAN001082_RS42110;Name=mdtD;gbkey=Gene;gene=mdtD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42110;old_locus_tag=CFSAN001082_18533
NZ_APAH01000379.1	Protein Homology	CDS	12354	13781	.	-	0	ID=cds-WP_000202071.1;Parent=gene-CFSAN001082_RS42110;Dbxref=GenBank:WP_000202071.1;Name=WP_000202071.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mdtD;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462786.1;locus_tag=CFSAN001082_RS42110;product=multidrug transporter subunit MdtD;protein_id=WP_000202071.1;transl_table=11
NZ_APAH01000379.1	RefSeq	gene	13793	14497	.	-	.	ID=gene-CFSAN001082_RS42115;Name=CFSAN001082_RS42115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42115;old_locus_tag=CFSAN001082_18538
NZ_APAH01000379.1	Protein Homology	CDS	13793	14497	.	-	0	ID=cds-WP_001131144.1;Parent=gene-CFSAN001082_RS42115;Dbxref=GenBank:WP_001131144.1;Name=WP_001131144.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462787.1;locus_tag=CFSAN001082_RS42115;product=FadR/GntR family transcriptional regulator;protein_id=WP_001131144.1;transl_table=11
NZ_APAH01000379.1	RefSeq	gene	14978	16519	.	+	.	ID=gene-CFSAN001082_RS42120;Name=CFSAN001082_RS42120;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS42120;old_locus_tag=CFSAN001082_r18549
NZ_APAH01000379.1	cmsearch	rRNA	14978	16519	.	+	.	ID=rna-CFSAN001082_RS42120;Parent=gene-CFSAN001082_RS42120;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS42120;product=16S ribosomal RNA
NZ_APAH01000379.1	cmsearch	exon	14978	16519	.	+	.	ID=exon-CFSAN001082_RS42120-1;Parent=rna-CFSAN001082_RS42120;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS42120;product=16S ribosomal RNA
NZ_APAH01000379.1	RefSeq	gene	16589	16665	.	+	.	ID=gene-CFSAN001082_RS42125;Name=CFSAN001082_RS42125;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS42125;old_locus_tag=CFSAN001082_t18545
NZ_APAH01000379.1	tRNAscan-SE	tRNA	16589	16665	.	+	.	ID=rna-CFSAN001082_RS42125;Parent=gene-CFSAN001082_RS42125;anticodon=(pos:16623..16625);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS42125;product=tRNA-Ile
NZ_APAH01000379.1	tRNAscan-SE	exon	16589	16665	.	+	.	ID=exon-CFSAN001082_RS42125-1;Parent=rna-CFSAN001082_RS42125;anticodon=(pos:16623..16625);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS42125;product=tRNA-Ile
NZ_APAH01000379.1	RefSeq	gene	16775	16850	.	+	.	ID=gene-CFSAN001082_RS42130;Name=CFSAN001082_RS42130;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS42130;old_locus_tag=CFSAN001082_t18547
NZ_APAH01000379.1	tRNAscan-SE	tRNA	16775	16850	.	+	.	ID=rna-CFSAN001082_RS42130;Parent=gene-CFSAN001082_RS42130;anticodon=(pos:16808..16810);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS42130;product=tRNA-Ala
NZ_APAH01000379.1	tRNAscan-SE	exon	16775	16850	.	+	.	ID=exon-CFSAN001082_RS42130-1;Parent=rna-CFSAN001082_RS42130;anticodon=(pos:16808..16810);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS42130;product=tRNA-Ala
NZ_APAH01000379.1	RefSeq	gene	17033	17572	.	+	.	ID=gene-CFSAN001082_RS42135;Name=CFSAN001082_RS42135;end_range=17572,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS42135;old_locus_tag=CFSAN001082_r18551;partial=true
NZ_APAH01000379.1	cmsearch	rRNA	17033	17572	.	+	.	ID=rna-CFSAN001082_RS42135;Parent=gene-CFSAN001082_RS42135;Dbxref=RFAM:RF02541;end_range=17572,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS42135;partial=true;product=23S ribosomal RNA
NZ_APAH01000379.1	cmsearch	exon	17033	17572	.	+	.	ID=exon-CFSAN001082_RS42135-1;Parent=rna-CFSAN001082_RS42135;Dbxref=RFAM:RF02541;end_range=17572,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS42135;partial=true;product=23S ribosomal RNA
##sequence-region NZ_APAH01000380.1 1 11877
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000380.1	RefSeq	region	1	11877	.	+	.	ID=NZ_APAH01000380.1:1..11877;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000380.1	RefSeq	gene	133	2547	.	-	.	ID=gene-CFSAN001082_RS42140;Name=ybbP;gbkey=Gene;gene=ybbP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42140;old_locus_tag=CFSAN001082_18551
NZ_APAH01000380.1	Protein Homology	CDS	133	2547	.	-	0	ID=cds-WP_023254735.1;Parent=gene-CFSAN001082_RS42140;Dbxref=GenBank:WP_023254735.1;Name=WP_023254735.1;gbkey=CDS;gene=ybbP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459503.1;locus_tag=CFSAN001082_RS42140;product=putative ABC transporter permease subunit YbbP;protein_id=WP_023254735.1;transl_table=11
NZ_APAH01000380.1	RefSeq	gene	2544	3230	.	-	.	ID=gene-CFSAN001082_RS42145;Name=ybbA;gbkey=Gene;gene=ybbA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42145;old_locus_tag=CFSAN001082_18556
NZ_APAH01000380.1	Protein Homology	CDS	2544	3230	.	-	0	ID=cds-WP_001110598.1;Parent=gene-CFSAN001082_RS42145;Dbxref=GenBank:WP_001110598.1;Name=WP_001110598.1;gbkey=CDS;gene=ybbA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459502.1;locus_tag=CFSAN001082_RS42145;product=putative ABC transporter ATP-binding protein YbbA;protein_id=WP_001110598.1;transl_table=11
NZ_APAH01000380.1	RefSeq	gene	3201	3815	.	+	.	ID=gene-CFSAN001082_RS42150;Name=tesA;gbkey=Gene;gene=tesA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42150;old_locus_tag=CFSAN001082_18561
NZ_APAH01000380.1	Protein Homology	CDS	3201	3815	.	+	0	ID=cds-WP_001010574.1;Parent=gene-CFSAN001082_RS42150;Dbxref=GenBank:WP_001010574.1;Name=WP_001010574.1;Ontology_term=GO:0006629,GO:0016298;gbkey=CDS;gene=tesA;go_function=lipase activity|0016298||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459501.1;locus_tag=CFSAN001082_RS42150;product=multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1;protein_id=WP_001010574.1;transl_table=11
NZ_APAH01000380.1	RefSeq	gene	3970	4740	.	+	.	ID=gene-CFSAN001082_RS42155;Name=CFSAN001082_RS42155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42155;old_locus_tag=CFSAN001082_18566
NZ_APAH01000380.1	Protein Homology	CDS	3970	4740	.	+	0	ID=cds-WP_001172804.1;Parent=gene-CFSAN001082_RS42155;Dbxref=GenBank:WP_001172804.1;Name=WP_001172804.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459500.1;locus_tag=CFSAN001082_RS42155;product=SDR family oxidoreductase;protein_id=WP_001172804.1;transl_table=11
NZ_APAH01000380.1	RefSeq	gene	4800	5654	.	+	.	ID=gene-CFSAN001082_RS42160;Name=cnoX;gbkey=Gene;gene=cnoX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42160;old_locus_tag=CFSAN001082_18571
NZ_APAH01000380.1	Protein Homology	CDS	4800	5654	.	+	0	ID=cds-WP_000116056.1;Parent=gene-CFSAN001082_RS42160;Dbxref=GenBank:WP_000116056.1;Name=WP_000116056.1;gbkey=CDS;gene=cnoX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459499.1;locus_tag=CFSAN001082_RS42160;product=chaperedoxin;protein_id=WP_000116056.1;transl_table=11
NZ_APAH01000380.1	RefSeq	gene	5740	6519	.	-	.	ID=gene-CFSAN001082_RS42165;Name=fetB;gbkey=Gene;gene=fetB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42165;old_locus_tag=CFSAN001082_18576
NZ_APAH01000380.1	Protein Homology	CDS	5740	6519	.	-	0	ID=cds-WP_001002130.1;Parent=gene-CFSAN001082_RS42165;Dbxref=GenBank:WP_001002130.1;Name=WP_001002130.1;Ontology_term=GO:1903988,GO:0005886;gbkey=CDS;gene=fetB;go_component=plasma membrane|0005886||IEA;go_process=iron ion export across plasma membrane|1903988||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459498.1;locus_tag=CFSAN001082_RS42165;product=iron efflux ABC transporter permease subunit FetB;protein_id=WP_001002130.1;transl_table=11
NZ_APAH01000380.1	RefSeq	gene	6506	7183	.	-	.	ID=gene-CFSAN001082_RS42170;Name=fetA;gbkey=Gene;gene=fetA;gene_biotype=protein_coding;gene_synonym=ybbL;locus_tag=CFSAN001082_RS42170;old_locus_tag=CFSAN001082_18581
NZ_APAH01000380.1	Protein Homology	CDS	6506	7183	.	-	0	ID=cds-WP_000140192.1;Parent=gene-CFSAN001082_RS42170;Dbxref=GenBank:WP_000140192.1;Name=WP_000140192.1;Ontology_term=GO:1903988,GO:0016887;gbkey=CDS;gene=fetA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=iron ion export across plasma membrane|1903988||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459497.1;locus_tag=CFSAN001082_RS42170;product=iron efflux ABC transporter ATP-binding subunit FetA;protein_id=WP_000140192.1;transl_table=11
NZ_APAH01000380.1	RefSeq	gene	7330	8247	.	+	.	ID=gene-CFSAN001082_RS42175;Name=CFSAN001082_RS42175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42175;old_locus_tag=CFSAN001082_18586
NZ_APAH01000380.1	Protein Homology	CDS	7330	8247	.	+	0	ID=cds-WP_000906146.1;Parent=gene-CFSAN001082_RS42175;Dbxref=GenBank:WP_000906146.1;Name=WP_000906146.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459496.1;locus_tag=CFSAN001082_RS42175;product=SPFH domain-containing protein;protein_id=WP_000906146.1;transl_table=11
NZ_APAH01000380.1	RefSeq	gene	8244	8696	.	+	.	ID=gene-CFSAN001082_RS42180;Name=CFSAN001082_RS42180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42180;old_locus_tag=CFSAN001082_18591
NZ_APAH01000380.1	Protein Homology	CDS	8244	8696	.	+	0	ID=cds-WP_000561177.1;Parent=gene-CFSAN001082_RS42180;Dbxref=GenBank:WP_000561177.1;Name=WP_000561177.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459495.1;locus_tag=CFSAN001082_RS42180;product=NfeD family protein;protein_id=WP_000561177.1;transl_table=11
NZ_APAH01000380.1	RefSeq	gene	8697	9113	.	-	.	ID=gene-CFSAN001082_RS42185;Name=cueR;gbkey=Gene;gene=cueR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42185;old_locus_tag=CFSAN001082_18596
NZ_APAH01000380.1	Protein Homology	CDS	8697	9113	.	-	0	ID=cds-WP_001026760.1;Parent=gene-CFSAN001082_RS42185;Dbxref=GenBank:WP_001026760.1;Name=WP_001026760.1;gbkey=CDS;gene=cueR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459494.1;locus_tag=CFSAN001082_RS42185;product=Cu(I)-responsive transcriptional regulator;protein_id=WP_001026760.1;transl_table=11
NZ_APAH01000380.1	RefSeq	gene	9223	11724	.	+	.	ID=gene-CFSAN001082_RS42190;Name=copA;gbkey=Gene;gene=copA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42190;old_locus_tag=CFSAN001082_18601
NZ_APAH01000380.1	Protein Homology	CDS	9223	11724	.	+	0	ID=cds-WP_000083913.1;Parent=gene-CFSAN001082_RS42190;Dbxref=GenBank:WP_000083913.1;Name=WP_000083913.1;Ontology_term=GO:0006812,GO:0019829;gbkey=CDS;gene=copA;go_function=ATPase-coupled monoatomic cation transmembrane transporter activity|0019829||IEA;go_process=monoatomic cation transport|0006812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459493.1;locus_tag=CFSAN001082_RS42190;product=copper-exporting P-type ATPase CopA;protein_id=WP_000083913.1;transl_table=11
##sequence-region NZ_APAH01000381.1 1 2042
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000381.1	RefSeq	region	1	2042	.	+	.	ID=NZ_APAH01000381.1:1..2042;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000381.1	RefSeq	gene	212	1264	.	+	.	ID=gene-CFSAN001082_RS42195;Name=pipB2;gbkey=Gene;gene=pipB2;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42195;old_locus_tag=CFSAN001082_18606
NZ_APAH01000381.1	Protein Homology	CDS	212	1264	.	+	0	ID=cds-WP_023254736.1;Parent=gene-CFSAN001082_RS42195;Dbxref=GenBank:WP_023254736.1;Name=WP_023254736.1;gbkey=CDS;gene=pipB2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461706.1;locus_tag=CFSAN001082_RS42195;product=type III secretion system effector PipB2;protein_id=WP_023254736.1;transl_table=11
NZ_APAH01000381.1	RefSeq	gene	1438	1770	.	+	.	ID=gene-CFSAN001082_RS47445;Name=CFSAN001082_RS47445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47445
NZ_APAH01000381.1	Protein Homology	CDS	1438	1770	.	+	0	ID=cds-WP_077911176.1;Parent=gene-CFSAN001082_RS47445;Dbxref=GenBank:WP_077911176.1;Name=WP_077911176.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_449164.1;locus_tag=CFSAN001082_RS47445;product=hypothetical protein;protein_id=WP_077911176.1;transl_table=11
##sequence-region NZ_APAH01000382.1 1 266
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000382.1	RefSeq	region	1	266	.	+	.	ID=NZ_APAH01000382.1:1..266;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000382.1	RefSeq	pseudogene	1	263	.	-	.	ID=gene-CFSAN001082_RS42200;Name=CFSAN001082_RS42200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS42200;old_locus_tag=CFSAN001082_18616;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000382.1	Protein Homology	CDS	1	263	.	-	0	ID=cds-CFSAN001082_RS42200;Parent=gene-CFSAN001082_RS42200;Note=phosphorylates the response regulator SsrB%3B is involved in the expression of the virulence genes of Salmonella pathogenicity island-2%3B incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460357.1;locus_tag=CFSAN001082_RS42200;partial=true;product=two component system sensor kinase;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000383.1 1 5642
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000383.1	RefSeq	region	1	5642	.	+	.	ID=NZ_APAH01000383.1:1..5642;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000383.1	RefSeq	gene	1	289	.	-	.	ID=gene-CFSAN001082_RS48370;Name=CFSAN001082_RS48370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48370;partial=true;start_range=.,1
NZ_APAH01000383.1	Protein Homology	CDS	1	289	.	-	0	ID=cds-WP_024150326.1;Parent=gene-CFSAN001082_RS48370;Dbxref=GenBank:WP_024150326.1;Name=WP_024150326.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001535435.1;locus_tag=CFSAN001082_RS48370;partial=true;product=STY0301 family protein;protein_id=WP_024150326.1;start_range=.,1;transl_table=11
NZ_APAH01000383.1	RefSeq	gene	302	688	.	-	.	ID=gene-CFSAN001082_RS48375;Name=CFSAN001082_RS48375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48375;old_locus_tag=CFSAN001082_18621
NZ_APAH01000383.1	Protein Homology	CDS	302	688	.	-	0	ID=cds-WP_023202546.1;Parent=gene-CFSAN001082_RS48375;Dbxref=GenBank:WP_023202546.1;Name=WP_023202546.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000323515.1;locus_tag=CFSAN001082_RS48375;product=BPSL0067 family protein;protein_id=WP_023202546.1;transl_table=11
NZ_APAH01000383.1	RefSeq	gene	755	2263	.	-	.	ID=gene-CFSAN001082_RS42210;Name=tssC;gbkey=Gene;gene=tssC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42210;old_locus_tag=CFSAN001082_18626
NZ_APAH01000383.1	Protein Homology	CDS	755	2263	.	-	0	ID=cds-WP_000013884.1;Parent=gene-CFSAN001082_RS42210;Dbxref=GenBank:WP_000013884.1;Name=WP_000013884.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;gene=tssC;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459271.1;locus_tag=CFSAN001082_RS42210;product=type VI secretion system contractile sheath large subunit;protein_id=WP_000013884.1;transl_table=11
NZ_APAH01000383.1	RefSeq	gene	2287	2829	.	-	.	ID=gene-CFSAN001082_RS42215;Name=tssB;gbkey=Gene;gene=tssB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42215;old_locus_tag=CFSAN001082_18631
NZ_APAH01000383.1	Protein Homology	CDS	2287	2829	.	-	0	ID=cds-WP_000996815.1;Parent=gene-CFSAN001082_RS42215;Dbxref=GenBank:WP_000996815.1;Name=WP_000996815.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssB;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459270.1;locus_tag=CFSAN001082_RS42215;product=type VI secretion system contractile sheath small subunit;protein_id=WP_000996815.1;transl_table=11
NZ_APAH01000383.1	RefSeq	gene	2929	5568	.	-	.	ID=gene-CFSAN001082_RS42220;Name=tssH;gbkey=Gene;gene=tssH;gene_biotype=protein_coding;gene_synonym=clpV;locus_tag=CFSAN001082_RS42220;old_locus_tag=CFSAN001082_18636
NZ_APAH01000383.1	Protein Homology	CDS	2929	5568	.	-	0	ID=cds-WP_023254739.1;Parent=gene-CFSAN001082_RS42220;Dbxref=GenBank:WP_023254739.1;Name=WP_023254739.1;Ontology_term=GO:0033103,GO:0016887,GO:0033104;gbkey=CDS;gene=tssH;go_component=type VI protein secretion system complex|0033104||IEA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459269.1;locus_tag=CFSAN001082_RS42220;product=type VI secretion system ATPase TssH;protein_id=WP_023254739.1;transl_table=11
##sequence-region NZ_APAH01000384.1 1 3315
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000384.1	RefSeq	region	1	3315	.	+	.	ID=NZ_APAH01000384.1:1..3315;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000384.1	RefSeq	gene	1	2817	.	+	.	ID=gene-CFSAN001082_RS42225;Name=CFSAN001082_RS42225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42225;old_locus_tag=CFSAN001082_18641;partial=true;start_range=.,1
NZ_APAH01000384.1	Protein Homology	CDS	1	2817	.	+	0	ID=cds-WP_023254740.1;Parent=gene-CFSAN001082_RS42225;Dbxref=GenBank:WP_023254740.1;Name=WP_023254740.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001044774.1;locus_tag=CFSAN001082_RS42225;partial=true;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_023254740.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000385.1 1 2054
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000385.1	RefSeq	region	1	2054	.	+	.	ID=NZ_APAH01000385.1:1..2054;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000385.1	RefSeq	gene	131	406	.	+	.	ID=gene-CFSAN001082_RS42230;Name=CFSAN001082_RS42230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42230;old_locus_tag=CFSAN001082_18646
NZ_APAH01000385.1	Protein Homology	CDS	131	406	.	+	0	ID=cds-WP_001254682.1;Parent=gene-CFSAN001082_RS42230;Dbxref=GenBank:WP_001254682.1;Name=WP_001254682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465441.1;locus_tag=CFSAN001082_RS42230;product=YnjH family protein;protein_id=WP_001254682.1;transl_table=11
NZ_APAH01000385.1	RefSeq	gene	366	782	.	-	.	ID=gene-CFSAN001082_RS42235;Name=CFSAN001082_RS42235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42235;old_locus_tag=CFSAN001082_18651
NZ_APAH01000385.1	Protein Homology	CDS	366	782	.	-	0	ID=cds-WP_000592139.1;Parent=gene-CFSAN001082_RS42235;Dbxref=GenBank:WP_000592139.1;Name=WP_000592139.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460267.1;locus_tag=CFSAN001082_RS42235;product=pyrimidine (deoxy)nucleoside triphosphate diphosphatase;protein_id=WP_000592139.1;transl_table=11
NZ_APAH01000385.1	RefSeq	gene	855	1661	.	-	.	ID=gene-CFSAN001082_RS42240;Name=xthA;gbkey=Gene;gene=xthA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42240;old_locus_tag=CFSAN001082_18656
NZ_APAH01000385.1	Protein Homology	CDS	855	1661	.	-	0	ID=cds-WP_000673954.1;Parent=gene-CFSAN001082_RS42240;Dbxref=GenBank:WP_000673954.1;Name=WP_000673954.1;Ontology_term=GO:0006281,GO:0003677,GO:0004519,GO:0008311;gbkey=CDS;gene=xthA;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA,double-stranded DNA 3'-5' DNA exonuclease activity|0008311||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460268.1;locus_tag=CFSAN001082_RS42240;product=exodeoxyribonuclease III;protein_id=WP_000673954.1;transl_table=11
##sequence-region NZ_APAH01000386.1 1 309
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000386.1	RefSeq	region	1	309	.	+	.	ID=NZ_APAH01000386.1:1..309;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000386.1	RefSeq	pseudogene	1	309	.	-	.	ID=gene-CFSAN001082_RS42245;Name=CFSAN001082_RS42245;end_range=309,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS42245;old_locus_tag=CFSAN001082_18661;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000386.1	Protein Homology	CDS	1	309	.	-	0	ID=cds-CFSAN001082_RS42245;Parent=gene-CFSAN001082_RS42245;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=309,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000626463.1;locus_tag=CFSAN001082_RS42245;partial=true;product=glycosyltransferase;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000387.1 1 80255
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000387.1	RefSeq	region	1	80255	.	+	.	ID=NZ_APAH01000387.1:1..80255;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000387.1	RefSeq	gene	15	1118	.	-	.	ID=gene-CFSAN001082_RS42250;Name=CFSAN001082_RS42250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42250;old_locus_tag=CFSAN001082_18666
NZ_APAH01000387.1	Protein Homology	CDS	15	1118	.	-	0	ID=cds-WP_023254742.1;Parent=gene-CFSAN001082_RS42250;Dbxref=GenBank:WP_023254742.1;Name=WP_023254742.1;Ontology_term=GO:0003677,GO:0004518;gbkey=CDS;go_function=DNA binding|0003677||IEA,nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462242.1;locus_tag=CFSAN001082_RS42250;product=PDDEXK nuclease domain-containing protein;protein_id=WP_023254742.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	1326	2744	.	-	.	ID=gene-CFSAN001082_RS42255;Name=gltD;gbkey=Gene;gene=gltD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42255;old_locus_tag=CFSAN001082_18671
NZ_APAH01000387.1	Protein Homology	CDS	1326	2744	.	-	0	ID=cds-WP_000081635.1;Parent=gene-CFSAN001082_RS42255;Dbxref=GenBank:WP_000081635.1;Name=WP_000081635.1;gbkey=CDS;gene=gltD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001540975.1;locus_tag=CFSAN001082_RS42255;product=glutamate synthase subunit GltD;protein_id=WP_000081635.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	2754	7214	.	-	.	ID=gene-CFSAN001082_RS42260;Name=gltB;gbkey=Gene;gene=gltB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42260;old_locus_tag=CFSAN001082_18676
NZ_APAH01000387.1	Protein Homology	CDS	2754	7214	.	-	0	ID=cds-WP_023254743.1;Parent=gene-CFSAN001082_RS42260;Dbxref=GenBank:WP_023254743.1;Name=WP_023254743.1;Ontology_term=GO:0006537,GO:0008152,GO:0003824,GO:0015930,GO:0016491;gbkey=CDS;gene=gltB;go_function=catalytic activity|0003824||IEA,glutamate synthase activity|0015930||IEA,oxidoreductase activity|0016491||IEA;go_process=glutamate biosynthetic process|0006537||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742510.1;locus_tag=CFSAN001082_RS42260;product=glutamate synthase large subunit;protein_id=WP_023254743.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	7886	8815	.	+	.	ID=gene-CFSAN001082_RS42270;Name=CFSAN001082_RS42270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42270;old_locus_tag=CFSAN001082_18686
NZ_APAH01000387.1	Protein Homology	CDS	7886	8815	.	+	0	ID=cds-WP_023206690.1;Parent=gene-CFSAN001082_RS42270;Dbxref=GenBank:WP_023206690.1;Name=WP_023206690.1;Note=This family includes YhcC from E. coli K-12%2C an uncharacterized radical SAM protein.;Ontology_term=GO:0051536,GO:1904047;gbkey=CDS;go_function=iron-sulfur cluster binding|0051536||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462239.1;locus_tag=CFSAN001082_RS42270;product=TIGR01212 family radical SAM protein;protein_id=WP_023206690.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	8909	11245	.	+	.	ID=gene-CFSAN001082_RS42275;Name=arcB;gbkey=Gene;gene=arcB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42275;old_locus_tag=CFSAN001082_18691
NZ_APAH01000387.1	Protein Homology	CDS	8909	11245	.	+	0	ID=cds-WP_000809819.1;Parent=gene-CFSAN001082_RS42275;Dbxref=GenBank:WP_000809819.1;Name=WP_000809819.1;Ontology_term=GO:0000160,GO:0006355,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=arcB;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462238.1;locus_tag=CFSAN001082_RS42275;product=aerobic respiration two-component sensor histidine kinase ArcB;protein_id=WP_000809819.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	11472	12125	.	+	.	ID=gene-CFSAN001082_RS42280;Name=elbB;gbkey=Gene;gene=elbB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42280;old_locus_tag=CFSAN001082_18696
NZ_APAH01000387.1	Protein Homology	CDS	11472	12125	.	+	0	ID=cds-WP_000719811.1;Parent=gene-CFSAN001082_RS42280;Dbxref=GenBank:WP_000719811.1;Name=WP_000719811.1;gbkey=CDS;gene=elbB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462237.1;locus_tag=CFSAN001082_RS42280;product=isoprenoid biosynthesis glyoxalase ElbB;protein_id=WP_000719811.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	12122	12850	.	+	.	ID=gene-CFSAN001082_RS42285;Name=mtgA;gbkey=Gene;gene=mtgA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42285;old_locus_tag=CFSAN001082_18701
NZ_APAH01000387.1	Protein Homology	CDS	12122	12850	.	+	0	ID=cds-WP_000044645.1;Parent=gene-CFSAN001082_RS42285;Dbxref=GenBank:WP_000044645.1;Name=WP_000044645.1;Ontology_term=GO:0009252,GO:0016763,GO:0009274,GO:0016020;gbkey=CDS;gene=mtgA;go_component=peptidoglycan-based cell wall|0009274||IEA,membrane|0016020||IEA;go_function=pentosyltransferase activity|0016763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462236.1;locus_tag=CFSAN001082_RS42285;product=monofunctional biosynthetic peptidoglycan transglycosylase;protein_id=WP_000044645.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	12925	13557	.	-	.	ID=gene-CFSAN001082_RS42290;Name=yrbL;gbkey=Gene;gene=yrbL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42290;old_locus_tag=CFSAN001082_18706
NZ_APAH01000387.1	Protein Homology	CDS	12925	13557	.	-	0	ID=cds-WP_000602198.1;Parent=gene-CFSAN001082_RS42290;Dbxref=GenBank:WP_000602198.1;Name=WP_000602198.1;gbkey=CDS;gene=yrbL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462235.1;locus_tag=CFSAN001082_RS42290;product=PhoP regulatory network protein YrbL;protein_id=WP_000602198.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	13806	14078	.	-	.	ID=gene-CFSAN001082_RS42295;Name=npr;gbkey=Gene;gene=npr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42295;old_locus_tag=CFSAN001082_18711
NZ_APAH01000387.1	Protein Homology	CDS	13806	14078	.	-	0	ID=cds-WP_000216797.1;Parent=gene-CFSAN001082_RS42295;Dbxref=GenBank:WP_000216797.1;Name=WP_000216797.1;gbkey=CDS;gene=npr;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000216792.1;locus_tag=CFSAN001082_RS42295;product=PTS phosphocarrier protein NPr;protein_id=WP_000216797.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	14075	14929	.	-	.	ID=gene-CFSAN001082_RS42300;Name=rapZ;gbkey=Gene;gene=rapZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42300;old_locus_tag=CFSAN001082_18716
NZ_APAH01000387.1	Protein Homology	CDS	14075	14929	.	-	0	ID=cds-WP_000243749.1;Parent=gene-CFSAN001082_RS42300;Dbxref=GenBank:WP_000243749.1;Name=WP_000243749.1;Ontology_term=GO:0005524;gbkey=CDS;gene=rapZ;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462233.1;locus_tag=CFSAN001082_RS42300;product=RNase adapter RapZ;protein_id=WP_000243749.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	14975	15466	.	-	.	ID=gene-CFSAN001082_RS42305;Name=ptsN;gbkey=Gene;gene=ptsN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42305;old_locus_tag=CFSAN001082_18721
NZ_APAH01000387.1	Protein Homology	CDS	14975	15466	.	-	0	ID=cds-WP_000609332.1;Parent=gene-CFSAN001082_RS42305;Dbxref=GenBank:WP_000609332.1;Name=WP_000609332.1;gbkey=CDS;gene=ptsN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462232.1;locus_tag=CFSAN001082_RS42305;product=PTS IIA-like nitrogen regulatory protein PtsN;protein_id=WP_000609332.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	15584	15871	.	-	.	ID=gene-CFSAN001082_RS42310;Name=hpf;gbkey=Gene;gene=hpf;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42310;old_locus_tag=CFSAN001082_18726
NZ_APAH01000387.1	Protein Homology	CDS	15584	15871	.	-	0	ID=cds-WP_001176589.1;Parent=gene-CFSAN001082_RS42310;Dbxref=GenBank:WP_001176589.1;Name=WP_001176589.1;Ontology_term=GO:0044238;gbkey=CDS;gene=hpf;go_process=primary metabolic process|0044238||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462231.1;locus_tag=CFSAN001082_RS42310;product=ribosome hibernation promoting factor;protein_id=WP_001176589.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	15894	17327	.	-	.	ID=gene-CFSAN001082_RS42315;Name=rpoN;gbkey=Gene;gene=rpoN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42315;old_locus_tag=CFSAN001082_18731
NZ_APAH01000387.1	Protein Homology	CDS	15894	17327	.	-	0	ID=cds-WP_000809020.1;Parent=gene-CFSAN001082_RS42315;Dbxref=GenBank:WP_000809020.1;Name=WP_000809020.1;Ontology_term=GO:0006352,GO:0001216,GO:0003677,GO:0016987;gbkey=CDS;gene=rpoN;go_function=DNA-binding transcription activator activity|0001216||IEA,DNA binding|0003677||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462230.1;locus_tag=CFSAN001082_RS42315;product=RNA polymerase factor sigma-54;protein_id=WP_000809020.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	17375	18100	.	-	.	ID=gene-CFSAN001082_RS42320;Name=lptB;gbkey=Gene;gene=lptB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42320;old_locus_tag=CFSAN001082_18736
NZ_APAH01000387.1	Protein Homology	CDS	17375	18100	.	-	0	ID=cds-WP_000224104.1;Parent=gene-CFSAN001082_RS42320;Dbxref=GenBank:WP_000224104.1;Name=WP_000224104.1;Ontology_term=GO:0055085,GO:0005524,GO:0043190;gbkey=CDS;gene=lptB;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003861862.1;locus_tag=CFSAN001082_RS42320;product=LPS export ABC transporter ATP-binding protein;protein_id=WP_000224104.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	18107	18661	.	-	.	ID=gene-CFSAN001082_RS42325;Name=lptA;gbkey=Gene;gene=lptA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42325;old_locus_tag=CFSAN001082_18741
NZ_APAH01000387.1	Protein Homology	CDS	18107	18661	.	-	0	ID=cds-WP_000669770.1;Parent=gene-CFSAN001082_RS42325;Dbxref=GenBank:WP_000669770.1;Name=WP_000669770.1;gbkey=CDS;gene=lptA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462228.1;locus_tag=CFSAN001082_RS42325;product=lipopolysaccharide ABC transporter substrate-binding protein LptA;protein_id=WP_000669770.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	18630	19205	.	-	.	ID=gene-CFSAN001082_RS42330;Name=lptC;gbkey=Gene;gene=lptC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42330;old_locus_tag=CFSAN001082_18746
NZ_APAH01000387.1	Protein Homology	CDS	18630	19205	.	-	0	ID=cds-WP_000047845.1;Parent=gene-CFSAN001082_RS42330;Dbxref=GenBank:WP_000047845.1;Name=WP_000047845.1;gbkey=CDS;gene=lptC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462227.1;locus_tag=CFSAN001082_RS42330;product=LPS export ABC transporter periplasmic protein LptC;protein_id=WP_000047845.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	19202	19768	.	-	.	ID=gene-CFSAN001082_RS42335;Name=kdsC;gbkey=Gene;gene=kdsC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42335;old_locus_tag=CFSAN001082_18751
NZ_APAH01000387.1	Protein Homology	CDS	19202	19768	.	-	0	ID=cds-WP_000030029.1;Parent=gene-CFSAN001082_RS42335;Dbxref=GenBank:WP_000030029.1;Name=WP_000030029.1;Ontology_term=GO:0016788;gbkey=CDS;gene=kdsC;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462226.1;locus_tag=CFSAN001082_RS42335;product=3-deoxy-manno-octulosonate-8-phosphatase KdsC;protein_id=WP_000030029.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	19789	20775	.	-	.	ID=gene-CFSAN001082_RS42340;Name=kdsD;gbkey=Gene;gene=kdsD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42340;old_locus_tag=CFSAN001082_18756
NZ_APAH01000387.1	Protein Homology	CDS	19789	20775	.	-	0	ID=cds-WP_023214441.1;Parent=gene-CFSAN001082_RS42340;Dbxref=GenBank:WP_023214441.1;Name=WP_023214441.1;Ontology_term=GO:1901135,GO:0016853,GO:0097367;gbkey=CDS;gene=kdsD;go_function=isomerase activity|0016853||IEA,carbohydrate derivative binding|0097367||IEA;go_process=carbohydrate derivative metabolic process|1901135||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462225.1;locus_tag=CFSAN001082_RS42340;product=arabinose-5-phosphate isomerase KdsD;protein_id=WP_023214441.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	20789	21766	.	-	.	ID=gene-CFSAN001082_RS42345;Name=CFSAN001082_RS42345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42345;old_locus_tag=CFSAN001082_18761
NZ_APAH01000387.1	Protein Homology	CDS	20789	21766	.	-	0	ID=cds-WP_000922736.1;Parent=gene-CFSAN001082_RS42345;Dbxref=GenBank:WP_000922736.1;Name=WP_000922736.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462224.1;locus_tag=CFSAN001082_RS42345;product=calcium/sodium antiporter;protein_id=WP_000922736.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	21979	22791	.	+	.	ID=gene-CFSAN001082_RS42350;Name=mlaF;gbkey=Gene;gene=mlaF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42350;old_locus_tag=CFSAN001082_18766
NZ_APAH01000387.1	Protein Homology	CDS	21979	22791	.	+	0	ID=cds-WP_000531566.1;Parent=gene-CFSAN001082_RS42350;Dbxref=GenBank:WP_000531566.1;Name=WP_000531566.1;Ontology_term=GO:0005524;gbkey=CDS;gene=mlaF;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462223.1;locus_tag=CFSAN001082_RS42350;product=phospholipid ABC transporter ATP-binding protein MlaF;protein_id=WP_000531566.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	22799	23581	.	+	.	ID=gene-CFSAN001082_RS42355;Name=mlaE;gbkey=Gene;gene=mlaE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42355;old_locus_tag=CFSAN001082_18771
NZ_APAH01000387.1	Protein Homology	CDS	22799	23581	.	+	0	ID=cds-WP_000925786.1;Parent=gene-CFSAN001082_RS42355;Dbxref=GenBank:WP_000925786.1;Name=WP_000925786.1;Ontology_term=GO:0043190;gbkey=CDS;gene=mlaE;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014071945.1;locus_tag=CFSAN001082_RS42355;product=lipid asymmetry maintenance ABC transporter permease subunit MlaE;protein_id=WP_000925786.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	23586	24137	.	+	.	ID=gene-CFSAN001082_RS42360;Name=mlaD;gbkey=Gene;gene=mlaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42360;old_locus_tag=CFSAN001082_18776
NZ_APAH01000387.1	Protein Homology	CDS	23586	24137	.	+	0	ID=cds-WP_001193591.1;Parent=gene-CFSAN001082_RS42360;Dbxref=GenBank:WP_001193591.1;Name=WP_001193591.1;Ontology_term=GO:0015914;gbkey=CDS;gene=mlaD;go_process=phospholipid transport|0015914||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462221.1;locus_tag=CFSAN001082_RS42360;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=WP_001193591.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	24156	24791	.	+	.	ID=gene-CFSAN001082_RS42365;Name=mlaC;gbkey=Gene;gene=mlaC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42365;old_locus_tag=CFSAN001082_18781
NZ_APAH01000387.1	Protein Homology	CDS	24156	24791	.	+	0	ID=cds-WP_000476475.1;Parent=gene-CFSAN001082_RS42365;Dbxref=GenBank:WP_000476475.1;Name=WP_000476475.1;gbkey=CDS;gene=mlaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462220.1;locus_tag=CFSAN001082_RS42365;product=phospholipid-binding protein MlaC;protein_id=WP_000476475.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	24791	25087	.	+	.	ID=gene-CFSAN001082_RS42370;Name=mlaB;gbkey=Gene;gene=mlaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42370;old_locus_tag=CFSAN001082_18786
NZ_APAH01000387.1	Protein Homology	CDS	24791	25087	.	+	0	ID=cds-WP_000188844.1;Parent=gene-CFSAN001082_RS42370;Dbxref=GenBank:WP_000188844.1;Name=WP_000188844.1;gbkey=CDS;gene=mlaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462219.1;locus_tag=CFSAN001082_RS42370;product=lipid asymmetry maintenance protein MlaB;protein_id=WP_000188844.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	25275	25529	.	+	.	ID=gene-CFSAN001082_RS42375;Name=ibaG;gbkey=Gene;gene=ibaG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42375;old_locus_tag=CFSAN001082_18791
NZ_APAH01000387.1	Protein Homology	CDS	25275	25529	.	+	0	ID=cds-WP_001518349.1;Parent=gene-CFSAN001082_RS42375;Dbxref=GenBank:WP_001518349.1;Name=WP_001518349.1;gbkey=CDS;gene=ibaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417657.2;locus_tag=CFSAN001082_RS42375;product=BolA family iron metabolism protein IbaG;protein_id=WP_001518349.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	25583	26842	.	+	.	ID=gene-CFSAN001082_RS42380;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42380;old_locus_tag=CFSAN001082_18796
NZ_APAH01000387.1	Protein Homology	CDS	25583	26842	.	+	0	ID=cds-WP_000357288.1;Parent=gene-CFSAN001082_RS42380;Dbxref=GenBank:WP_000357288.1;Name=WP_000357288.1;Ontology_term=GO:0019277,GO:0008760;gbkey=CDS;gene=murA;go_function=UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity|0008760||IEA;go_process=UDP-N-acetylgalactosamine biosynthetic process|0019277||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462217.1;locus_tag=CFSAN001082_RS42380;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_000357288.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	26901	27188	.	-	.	ID=gene-CFSAN001082_RS42385;Name=sfsB;gbkey=Gene;gene=sfsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42385;old_locus_tag=CFSAN001082_18801
NZ_APAH01000387.1	Protein Homology	CDS	26901	27188	.	-	0	ID=cds-WP_000444167.1;Parent=gene-CFSAN001082_RS42385;Dbxref=GenBank:WP_000444167.1;Name=WP_000444167.1;gbkey=CDS;gene=sfsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462216.1;locus_tag=CFSAN001082_RS42385;product=DNA-binding transcriptional regulator SfsB;protein_id=WP_000444167.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	27420	28391	.	-	.	ID=gene-CFSAN001082_RS42390;Name=ispB;gbkey=Gene;gene=ispB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42390;old_locus_tag=CFSAN001082_18806
NZ_APAH01000387.1	Protein Homology	CDS	27420	28391	.	-	0	ID=cds-WP_001047354.1;Parent=gene-CFSAN001082_RS42390;Dbxref=GenBank:WP_001047354.1;Name=WP_001047354.1;Ontology_term=GO:0008299;gbkey=CDS;gene=ispB;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462215.1;locus_tag=CFSAN001082_RS42390;product=octaprenyl diphosphate synthase;protein_id=WP_001047354.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	28649	28960	.	+	.	ID=gene-CFSAN001082_RS42395;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42395;old_locus_tag=CFSAN001082_18811
NZ_APAH01000387.1	Protein Homology	CDS	28649	28960	.	+	0	ID=cds-WP_000271396.1;Parent=gene-CFSAN001082_RS42395;Dbxref=GenBank:WP_000271396.1;Name=WP_000271396.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rplU;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015960603.1;locus_tag=CFSAN001082_RS42395;product=50S ribosomal protein L21;protein_id=WP_000271396.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	28980	29237	.	+	.	ID=gene-CFSAN001082_RS42400;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42400;old_locus_tag=CFSAN001082_18816
NZ_APAH01000387.1	Protein Homology	CDS	28980	29237	.	+	0	ID=cds-WP_000940593.1;Parent=gene-CFSAN001082_RS42400;Dbxref=GenBank:WP_000940593.1;Name=WP_000940593.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmA;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004933559.1;locus_tag=CFSAN001082_RS42400;product=50S ribosomal protein L27;protein_id=WP_000940593.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	29367	30332	.	+	.	ID=gene-CFSAN001082_RS42405;Name=CFSAN001082_RS42405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42405;old_locus_tag=CFSAN001082_18821
NZ_APAH01000387.1	Protein Homology	CDS	29367	30332	.	+	0	ID=cds-WP_000813052.1;Parent=gene-CFSAN001082_RS42405;Dbxref=GenBank:WP_000813052.1;Name=WP_000813052.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012135318.1;locus_tag=CFSAN001082_RS42405;product=DMT family transporter;protein_id=WP_000813052.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	30348	31520	.	+	.	ID=gene-CFSAN001082_RS42410;Name=cgtA;gbkey=Gene;gene=cgtA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42410;old_locus_tag=CFSAN001082_18826
NZ_APAH01000387.1	Protein Homology	CDS	30348	31520	.	+	0	ID=cds-WP_000673556.1;Parent=gene-CFSAN001082_RS42410;Dbxref=GenBank:WP_000673556.1;Name=WP_000673556.1;Ontology_term=GO:0000287,GO:0003924,GO:0005525;gbkey=CDS;gene=cgtA;go_function=magnesium ion binding|0000287||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462212.1;locus_tag=CFSAN001082_RS42410;product=Obg family GTPase CgtA;protein_id=WP_000673556.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	31651	33084	.	-	.	ID=gene-CFSAN001082_RS42415;Name=dacB;gbkey=Gene;gene=dacB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42415;old_locus_tag=CFSAN001082_18831
NZ_APAH01000387.1	Protein Homology	CDS	31651	33084	.	-	0	ID=cds-WP_001212675.1;Parent=gene-CFSAN001082_RS42415;Dbxref=GenBank:WP_001212675.1;Name=WP_001212675.1;Ontology_term=GO:0006508,GO:0004185;gbkey=CDS;gene=dacB;go_function=serine-type carboxypeptidase activity|0004185||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462211.1;locus_tag=CFSAN001082_RS42415;product=serine-type D-Ala-D-Ala carboxypeptidase;protein_id=WP_001212675.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	33332	33808	.	+	.	ID=gene-CFSAN001082_RS42425;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42425;old_locus_tag=CFSAN001082_18841
NZ_APAH01000387.1	Protein Homology	CDS	33332	33808	.	+	0	ID=cds-WP_001148008.1;Parent=gene-CFSAN001082_RS42425;Dbxref=GenBank:WP_001148008.1;Name=WP_001148008.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=greA;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006178768.1;locus_tag=CFSAN001082_RS42425;product=transcription elongation factor GreA;protein_id=WP_001148008.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	33964	34257	.	-	.	ID=gene-CFSAN001082_RS42430;Name=yhbY;gbkey=Gene;gene=yhbY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42430;old_locus_tag=CFSAN001082_18846
NZ_APAH01000387.1	Protein Homology	CDS	33964	34257	.	-	0	ID=cds-WP_001592995.1;Parent=gene-CFSAN001082_RS42430;Dbxref=GenBank:WP_001592995.1;Name=WP_001592995.1;gbkey=CDS;gene=yhbY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014833438.1;locus_tag=CFSAN001082_RS42430;product=ribosome assembly RNA-binding protein YhbY;protein_id=WP_001592995.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	34384	35010	.	+	.	ID=gene-CFSAN001082_RS42435;Name=rlmE;gbkey=Gene;gene=rlmE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42435;old_locus_tag=CFSAN001082_18851
NZ_APAH01000387.1	Protein Homology	CDS	34384	35010	.	+	0	ID=cds-WP_000145974.1;Parent=gene-CFSAN001082_RS42435;Dbxref=GenBank:WP_000145974.1;Name=WP_000145974.1;Ontology_term=GO:0001510,GO:0006364,GO:0016436;gbkey=CDS;gene=rlmE;go_function=rRNA (uridine) methyltransferase activity|0016436||IEA;go_process=RNA methylation|0001510||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462208.1;locus_tag=CFSAN001082_RS42435;product=23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE;protein_id=WP_000145974.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	35114	37048	.	+	.	ID=gene-CFSAN001082_RS42440;Name=ftsH;gbkey=Gene;gene=ftsH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42440;old_locus_tag=CFSAN001082_18856
NZ_APAH01000387.1	Protein Homology	CDS	35114	37048	.	+	0	ID=cds-WP_001107481.1;Parent=gene-CFSAN001082_RS42440;Dbxref=GenBank:WP_001107481.1;Name=WP_001107481.1;Ontology_term=GO:0006508,GO:0004176,GO:0004222;gbkey=CDS;gene=ftsH;go_function=ATP-dependent peptidase activity|0004176||IEA,metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014833437.1;locus_tag=CFSAN001082_RS42440;product=ATP-dependent zinc metalloprotease FtsH;protein_id=WP_001107481.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	37153	38001	.	+	.	ID=gene-CFSAN001082_RS42445;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42445;old_locus_tag=CFSAN001082_18861
NZ_APAH01000387.1	Protein Homology	CDS	37153	38001	.	+	0	ID=cds-WP_000764711.1;Parent=gene-CFSAN001082_RS42445;Dbxref=GenBank:WP_000764711.1;Name=WP_000764711.1;Ontology_term=GO:0004156;gbkey=CDS;gene=folP;go_function=dihydropteroate synthase activity|0004156||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462206.1;locus_tag=CFSAN001082_RS42445;product=dihydropteroate synthase;protein_id=WP_000764711.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	37994	39331	.	+	.	ID=gene-CFSAN001082_RS42450;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42450;old_locus_tag=CFSAN001082_18866
NZ_APAH01000387.1	Protein Homology	CDS	37994	39331	.	+	0	ID=cds-WP_000071169.1;Parent=gene-CFSAN001082_RS42450;Dbxref=GenBank:WP_000071169.1;Name=WP_000071169.1;Ontology_term=GO:0005975,GO:0000287,GO:0008966,GO:0016868;gbkey=CDS;gene=glmM;go_function=magnesium ion binding|0000287||IEA,phosphoglucosamine mutase activity|0008966||IEA,intramolecular phosphotransferase activity|0016868||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462205.1;locus_tag=CFSAN001082_RS42450;product=phosphoglucosamine mutase;protein_id=WP_000071169.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	39554	39886	.	+	.	ID=gene-CFSAN001082_RS42455;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42455;old_locus_tag=CFSAN001082_18871
NZ_APAH01000387.1	Protein Homology	CDS	39554	39886	.	+	0	ID=cds-WP_000272680.1;Parent=gene-CFSAN001082_RS42455;Dbxref=GenBank:WP_000272680.1;Name=WP_000272680.1;Ontology_term=GO:0015739,GO:0015136,GO:0016020;gbkey=CDS;gene=secG;go_component=membrane|0016020||IEA;go_function=sialic acid transmembrane transporter activity|0015136||IEA;go_process=sialic acid transport|0015739||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462204.1;locus_tag=CFSAN001082_RS42455;product=preprotein translocase subunit SecG;protein_id=WP_000272680.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	39900	39986	.	+	.	ID=gene-CFSAN001082_RS42460;Name=CFSAN001082_RS42460;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS42460;old_locus_tag=CFSAN001082_t19063
NZ_APAH01000387.1	tRNAscan-SE	tRNA	39900	39986	.	+	.	ID=rna-CFSAN001082_RS42460;Parent=gene-CFSAN001082_RS42460;anticodon=(pos:39934..39936);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS42460;product=tRNA-Leu
NZ_APAH01000387.1	tRNAscan-SE	exon	39900	39986	.	+	.	ID=exon-CFSAN001082_RS42460-1;Parent=rna-CFSAN001082_RS42460;anticodon=(pos:39934..39936);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS42460;product=tRNA-Leu
NZ_APAH01000387.1	RefSeq	gene	40322	41386	.	+	.	ID=gene-CFSAN001082_RS42465;Name=CFSAN001082_RS42465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42465;old_locus_tag=CFSAN001082_18876
NZ_APAH01000387.1	Protein Homology	CDS	40322	41386	.	+	0	ID=cds-WP_023254744.1;Parent=gene-CFSAN001082_RS42465;Dbxref=GenBank:WP_023254744.1;Name=WP_023254744.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462203.1;locus_tag=CFSAN001082_RS42465;product=DUF1963 domain-containing protein;protein_id=WP_023254744.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	41472	42815	.	-	.	ID=gene-CFSAN001082_RS42470;Name=argG;gbkey=Gene;gene=argG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42470;old_locus_tag=CFSAN001082_18881
NZ_APAH01000387.1	Protein Homology	CDS	41472	42815	.	-	0	ID=cds-WP_000207646.1;Parent=gene-CFSAN001082_RS42470;Dbxref=GenBank:WP_000207646.1;Name=WP_000207646.1;Ontology_term=GO:0006526,GO:0004055,GO:0005524,GO:0042803;gbkey=CDS;gene=argG;go_function=argininosuccinate synthase activity|0004055||IEA,ATP binding|0005524||IEA,protein homodimerization activity|0042803||IEA;go_process=L-arginine biosynthetic process|0006526||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417640.1;locus_tag=CFSAN001082_RS42470;product=argininosuccinate synthase;protein_id=WP_000207646.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	43159	43235	.	+	.	ID=gene-CFSAN001082_RS42475;Name=CFSAN001082_RS42475;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS42475;old_locus_tag=CFSAN001082_t19065
NZ_APAH01000387.1	tRNAscan-SE	tRNA	43159	43235	.	+	.	ID=rna-CFSAN001082_RS42475;Parent=gene-CFSAN001082_RS42475;anticodon=(pos:43193..43195);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS42475;product=tRNA-Met
NZ_APAH01000387.1	tRNAscan-SE	exon	43159	43235	.	+	.	ID=exon-CFSAN001082_RS42475-1;Parent=rna-CFSAN001082_RS42475;anticodon=(pos:43193..43195);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS42475;product=tRNA-Met
NZ_APAH01000387.1	RefSeq	gene	43443	43895	.	+	.	ID=gene-CFSAN001082_RS42480;Name=rimP;gbkey=Gene;gene=rimP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42480;old_locus_tag=CFSAN001082_18886
NZ_APAH01000387.1	Protein Homology	CDS	43443	43895	.	+	0	ID=cds-WP_000105461.1;Parent=gene-CFSAN001082_RS42480;Dbxref=GenBank:WP_000105461.1;Name=WP_000105461.1;Ontology_term=GO:0042274;gbkey=CDS;gene=rimP;go_process=ribosomal small subunit biogenesis|0042274||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004125659.1;locus_tag=CFSAN001082_RS42480;product=ribosome maturation factor RimP;protein_id=WP_000105461.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	43923	45425	.	+	.	ID=gene-CFSAN001082_RS42485;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42485;old_locus_tag=CFSAN001082_18891
NZ_APAH01000387.1	Protein Homology	CDS	43923	45425	.	+	0	ID=cds-WP_001031038.1;Parent=gene-CFSAN001082_RS42485;Dbxref=GenBank:WP_001031038.1;Name=WP_001031038.1;Ontology_term=GO:0006353,GO:0003723;gbkey=CDS;gene=nusA;go_function=RNA binding|0003723||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005131833.1;locus_tag=CFSAN001082_RS42485;product=transcription termination factor NusA;protein_id=WP_001031038.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	45450	48128	.	+	.	ID=gene-CFSAN001082_RS42490;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42490;old_locus_tag=CFSAN001082_18896
NZ_APAH01000387.1	Protein Homology	CDS	45450	48128	.	+	0	ID=cds-WP_023254745.1;Parent=gene-CFSAN001082_RS42490;Dbxref=GenBank:WP_023254745.1;Name=WP_023254745.1;Ontology_term=GO:0006413,GO:0003743,GO:0003924,GO:0005525,GO:0005737;gbkey=CDS;gene=infB;go_component=cytoplasm|0005737||IEA;go_function=translation initiation factor activity|0003743||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462199.1;locus_tag=CFSAN001082_RS42490;product=translation initiation factor IF-2;protein_id=WP_023254745.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	48349	48750	.	+	.	ID=gene-CFSAN001082_RS42495;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42495;old_locus_tag=CFSAN001082_18901
NZ_APAH01000387.1	Protein Homology	CDS	48349	48750	.	+	0	ID=cds-WP_001040208.1;Parent=gene-CFSAN001082_RS42495;Dbxref=GenBank:WP_001040208.1;Name=WP_001040208.1;Ontology_term=GO:0006364;gbkey=CDS;gene=rbfA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001712908.1;locus_tag=CFSAN001082_RS42495;product=30S ribosome-binding factor RbfA;protein_id=WP_001040208.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	48750	49694	.	+	.	ID=gene-CFSAN001082_RS42500;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42500;old_locus_tag=CFSAN001082_18906
NZ_APAH01000387.1	Protein Homology	CDS	48750	49694	.	+	0	ID=cds-WP_023254746.1;Parent=gene-CFSAN001082_RS42500;Dbxref=GenBank:WP_023254746.1;Name=WP_023254746.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truB;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462197.1;locus_tag=CFSAN001082_RS42500;product=tRNA pseudouridine(55) synthase TruB;protein_id=WP_023254746.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	49845	50114	.	+	.	ID=gene-CFSAN001082_RS42505;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42505;old_locus_tag=CFSAN001082_18911
NZ_APAH01000387.1	Protein Homology	CDS	49845	50114	.	+	0	ID=cds-WP_000059465.1;Parent=gene-CFSAN001082_RS42505;Dbxref=GenBank:WP_000059465.1;Name=WP_000059465.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004933502.1;locus_tag=CFSAN001082_RS42505;product=30S ribosomal protein S15;protein_id=WP_000059465.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	50356	52491	.	+	.	ID=gene-CFSAN001082_RS42510;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42510;old_locus_tag=CFSAN001082_18916
NZ_APAH01000387.1	Protein Homology	CDS	50356	52491	.	+	0	ID=cds-WP_001670767.1;Parent=gene-CFSAN001082_RS42510;Dbxref=GenBank:WP_001670767.1;Name=WP_001670767.1;Ontology_term=GO:0006402,GO:0003723,GO:0004654;gbkey=CDS;gene=pnp;go_function=RNA binding|0003723||IEA,polyribonucleotide nucleotidyltransferase activity|0004654||IEA;go_process=mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462195.1;locus_tag=CFSAN001082_RS42510;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_001670767.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	52601	53485	.	+	.	ID=gene-CFSAN001082_RS42515;Name=nlpI;gbkey=Gene;gene=nlpI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42515;old_locus_tag=CFSAN001082_18921
NZ_APAH01000387.1	Protein Homology	CDS	52601	53485	.	+	0	ID=cds-WP_000802069.1;Parent=gene-CFSAN001082_RS42515;Dbxref=GenBank:WP_000802069.1;Name=WP_000802069.1;Ontology_term=GO:0005515;gbkey=CDS;gene=nlpI;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020802045.1;locus_tag=CFSAN001082_RS42515;product=lipoprotein NlpI;protein_id=WP_000802069.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	53591	53671	.	+	.	ID=gene-CFSAN001082_RS48380;Name=yrbN;gbkey=Gene;gene=yrbN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48380
NZ_APAH01000387.1	Protein Homology	CDS	53591	53671	.	+	0	ID=cds-WP_010723222.1;Parent=gene-CFSAN001082_RS48380;Dbxref=GenBank:WP_010723222.1;Name=WP_010723222.1;gbkey=CDS;gene=yrbN;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791258.1;locus_tag=CFSAN001082_RS48380;product=protein YrbN;protein_id=WP_010723222.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	53664	55553	.	+	.	ID=gene-CFSAN001082_RS42520;Name=deaD;gbkey=Gene;gene=deaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42520;old_locus_tag=CFSAN001082_18926
NZ_APAH01000387.1	Protein Homology	CDS	53664	55553	.	+	0	ID=cds-WP_000807248.1;Parent=gene-CFSAN001082_RS42520;Dbxref=GenBank:WP_000807248.1;Name=WP_000807248.1;gbkey=CDS;gene=deaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312070.2;locus_tag=CFSAN001082_RS42520;product=ATP-dependent RNA helicase DeaD;protein_id=WP_000807248.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	55707	56951	.	+	.	ID=gene-CFSAN001082_RS42525;Name=mtr;gbkey=Gene;gene=mtr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42525;old_locus_tag=CFSAN001082_18931
NZ_APAH01000387.1	Protein Homology	CDS	55707	56951	.	+	0	ID=cds-WP_023254747.1;Parent=gene-CFSAN001082_RS42525;Dbxref=GenBank:WP_023254747.1;Name=WP_023254747.1;Ontology_term=GO:0015801,GO:0015173,GO:0005886;gbkey=CDS;gene=mtr;go_component=plasma membrane|0005886||IEA;go_function=aromatic amino acid transmembrane transporter activity|0015173||IEA;go_process=aromatic amino acid transport|0015801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462192.1;locus_tag=CFSAN001082_RS42525;product=tryptophan permease;protein_id=WP_023254747.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	57042	58049	.	-	.	ID=gene-CFSAN001082_RS42530;Name=CFSAN001082_RS42530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42530;old_locus_tag=CFSAN001082_18936
NZ_APAH01000387.1	Protein Homology	CDS	57042	58049	.	-	0	ID=cds-WP_017441477.1;Parent=gene-CFSAN001082_RS42530;Dbxref=GenBank:WP_017441477.1;Name=WP_017441477.1;Ontology_term=GO:0016705;gbkey=CDS;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen|0016705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462189.1;locus_tag=CFSAN001082_RS42530;product=luciferase-like monooxygenase;protein_id=WP_017441477.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	58227	59105	.	-	.	ID=gene-CFSAN001082_RS42535;Name=CFSAN001082_RS42535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42535;old_locus_tag=CFSAN001082_18941
NZ_APAH01000387.1	Protein Homology	CDS	58227	59105	.	-	0	ID=cds-WP_000877713.1;Parent=gene-CFSAN001082_RS42535;Dbxref=GenBank:WP_000877713.1;Name=WP_000877713.1;Ontology_term=GO:0006744;gbkey=CDS;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312067.2;locus_tag=CFSAN001082_RS42535;product=U32 family peptidase;protein_id=WP_000877713.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	59114	60109	.	-	.	ID=gene-CFSAN001082_RS42540;Name=ubiU;gbkey=Gene;gene=ubiU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42540;old_locus_tag=CFSAN001082_18946
NZ_APAH01000387.1	Protein Homology	CDS	59114	60109	.	-	0	ID=cds-WP_000421309.1;Parent=gene-CFSAN001082_RS42540;Dbxref=GenBank:WP_000421309.1;Name=WP_000421309.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiU;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017457364.1;locus_tag=CFSAN001082_RS42540;product=ubiquinone anaerobic biosynthesis protein UbiU;protein_id=WP_000421309.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	60326	60850	.	+	.	ID=gene-CFSAN001082_RS42545;Name=ubiT;gbkey=Gene;gene=ubiT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42545;old_locus_tag=CFSAN001082_18951
NZ_APAH01000387.1	Protein Homology	CDS	60326	60850	.	+	0	ID=cds-WP_000884721.1;Parent=gene-CFSAN001082_RS42545;Dbxref=GenBank:WP_000884721.1;Name=WP_000884721.1;Ontology_term=GO:0006744,GO:0110142;gbkey=CDS;gene=ubiT;go_component=ubiquinone biosynthesis complex|0110142||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462186.1;locus_tag=CFSAN001082_RS42545;product=ubiquinone anaerobic biosynthesis accessory factor UbiT;protein_id=WP_000884721.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	60844	61347	.	+	.	ID=gene-CFSAN001082_RS42550;Name=CFSAN001082_RS42550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42550;old_locus_tag=CFSAN001082_18956
NZ_APAH01000387.1	Protein Homology	CDS	60844	61347	.	+	0	ID=cds-WP_000908562.1;Parent=gene-CFSAN001082_RS42550;Dbxref=GenBank:WP_000908562.1;Name=WP_000908562.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462185.1;locus_tag=CFSAN001082_RS42550;product=GNAT family N-acetyltransferase;protein_id=WP_000908562.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	61334	61651	.	-	.	ID=gene-CFSAN001082_RS42555;Name=CFSAN001082_RS42555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42555;old_locus_tag=CFSAN001082_18961
NZ_APAH01000387.1	Protein Homology	CDS	61334	61651	.	-	0	ID=cds-WP_000928379.1;Parent=gene-CFSAN001082_RS42555;Dbxref=GenBank:WP_000928379.1;Name=WP_000928379.1;Ontology_term=GO:0004518;gbkey=CDS;go_function=nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462184.3;locus_tag=CFSAN001082_RS42555;product=GIY-YIG nuclease family protein;protein_id=WP_000928379.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	61689	62132	.	+	.	ID=gene-CFSAN001082_RS42560;Name=CFSAN001082_RS42560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42560;old_locus_tag=CFSAN001082_18966
NZ_APAH01000387.1	Protein Homology	CDS	61689	62132	.	+	0	ID=cds-WP_000380404.1;Parent=gene-CFSAN001082_RS42560;Dbxref=GenBank:WP_000380404.1;Name=WP_000380404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462183.1;locus_tag=CFSAN001082_RS42560;product=YhbP family protein;protein_id=WP_000380404.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	62112	62630	.	-	.	ID=gene-CFSAN001082_RS42565;Name=yhbO;gbkey=Gene;gene=yhbO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42565;old_locus_tag=CFSAN001082_18971
NZ_APAH01000387.1	Protein Homology	CDS	62112	62630	.	-	0	ID=cds-WP_000037599.1;Parent=gene-CFSAN001082_RS42565;Dbxref=GenBank:WP_000037599.1;Name=WP_000037599.1;gbkey=CDS;gene=yhbO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462182.1;locus_tag=CFSAN001082_RS42565;product=protein/nucleic acid deglycase;protein_id=WP_000037599.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	62761	63396	.	+	.	ID=gene-CFSAN001082_RS42570;Name=CFSAN001082_RS42570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42570;old_locus_tag=CFSAN001082_18976
NZ_APAH01000387.1	Protein Homology	CDS	62761	63396	.	+	0	ID=cds-WP_023254748.1;Parent=gene-CFSAN001082_RS42570;Dbxref=GenBank:WP_023254748.1;Name=WP_023254748.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000084527.1;locus_tag=CFSAN001082_RS42570;product=NAD(P)H-binding protein;protein_id=WP_023254748.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	63463	64038	.	-	.	ID=gene-CFSAN001082_RS42575;Name=dolP;gbkey=Gene;gene=dolP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42575;old_locus_tag=CFSAN001082_18981
NZ_APAH01000387.1	Protein Homology	CDS	63463	64038	.	-	0	ID=cds-WP_000643280.1;Parent=gene-CFSAN001082_RS42575;Dbxref=GenBank:WP_000643280.1;Name=WP_000643280.1;Ontology_term=GO:0006970;gbkey=CDS;gene=dolP;go_process=response to osmotic stress|0006970||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462180.1;locus_tag=CFSAN001082_RS42575;product=division/outer membrane stress-associated lipid-binding lipoprotein;protein_id=WP_000643280.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	64048	64638	.	-	.	ID=gene-CFSAN001082_RS48385;Name=diaA;gbkey=Gene;gene=diaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48385;old_locus_tag=CFSAN001082_18986
NZ_APAH01000387.1	Protein Homology	CDS	64048	64638	.	-	0	ID=cds-WP_000893481.1;Parent=gene-CFSAN001082_RS48385;Dbxref=GenBank:WP_000893481.1;Name=WP_000893481.1;gbkey=CDS;gene=diaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462179.1;locus_tag=CFSAN001082_RS48385;product=DnaA initiator-associating protein DiaA;protein_id=WP_000893481.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	64660	65055	.	-	.	ID=gene-CFSAN001082_RS48390;Name=CFSAN001082_RS48390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48390;old_locus_tag=CFSAN001082_18991
NZ_APAH01000387.1	Protein Homology	CDS	64660	65055	.	-	0	ID=cds-WP_000057285.1;Parent=gene-CFSAN001082_RS48390;Dbxref=GenBank:WP_000057285.1;Name=WP_000057285.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462178.1;locus_tag=CFSAN001082_RS48390;product=YraN family protein;protein_id=WP_000057285.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	65013	67055	.	-	.	ID=gene-CFSAN001082_RS42590;Name=CFSAN001082_RS42590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42590;old_locus_tag=CFSAN001082_18996
NZ_APAH01000387.1	Protein Homology	CDS	65013	67055	.	-	0	ID=cds-WP_023254749.1;Parent=gene-CFSAN001082_RS42590;Dbxref=GenBank:WP_023254749.1;Name=WP_023254749.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462177.1;locus_tag=CFSAN001082_RS42590;product=penicillin-binding protein activator;protein_id=WP_023254749.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	67119	67982	.	+	.	ID=gene-CFSAN001082_RS42595;Name=rsmI;gbkey=Gene;gene=rsmI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42595;old_locus_tag=CFSAN001082_19001
NZ_APAH01000387.1	Protein Homology	CDS	67119	67982	.	+	0	ID=cds-WP_000812295.1;Parent=gene-CFSAN001082_RS42595;Dbxref=GenBank:WP_000812295.1;Name=WP_000812295.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rsmI;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462176.1;locus_tag=CFSAN001082_RS42595;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=WP_000812295.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	68140	68913	.	-	.	ID=gene-CFSAN001082_RS42600;Name=CFSAN001082_RS42600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42600;old_locus_tag=CFSAN001082_19006
NZ_APAH01000387.1	Protein Homology	CDS	68140	68913	.	-	0	ID=cds-WP_023254750.1;Parent=gene-CFSAN001082_RS42600;Dbxref=GenBank:WP_023254750.1;Name=WP_023254750.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462175.1;locus_tag=CFSAN001082_RS42600;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_023254750.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	69024	70067	.	-	.	ID=gene-CFSAN001082_RS42605;Name=gatD;gbkey=Gene;gene=gatD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42605;old_locus_tag=CFSAN001082_19011
NZ_APAH01000387.1	Protein Homology	CDS	69024	70067	.	-	0	ID=cds-WP_000844173.1;Parent=gene-CFSAN001082_RS42605;Dbxref=GenBank:WP_000844173.1;Name=WP_000844173.1;Ontology_term=GO:0008270,GO:0016491;gbkey=CDS;gene=gatD;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462174.1;locus_tag=CFSAN001082_RS42605;product=galactitol-1-phosphate 5-dehydrogenase;protein_id=WP_000844173.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	70111	71484	.	-	.	ID=gene-CFSAN001082_RS42610;Name=CFSAN001082_RS42610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42610;old_locus_tag=CFSAN001082_19016
NZ_APAH01000387.1	Protein Homology	CDS	70111	71484	.	-	0	ID=cds-WP_000490601.1;Parent=gene-CFSAN001082_RS42610;Dbxref=GenBank:WP_000490601.1;Name=WP_000490601.1;Ontology_term=GO:0009401,GO:0015796,GO:0015577,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=galactitol transmembrane transporter activity|0015577||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,galactitol transmembrane transport|0015796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462173.1;locus_tag=CFSAN001082_RS42610;product=galactitol-specific PTS transporter subunit IIC;protein_id=WP_000490601.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	71488	71772	.	-	.	ID=gene-CFSAN001082_RS42615;Name=gatB;gbkey=Gene;gene=gatB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42615;old_locus_tag=CFSAN001082_19021
NZ_APAH01000387.1	Protein Homology	CDS	71488	71772	.	-	0	ID=cds-WP_000824293.1;Parent=gene-CFSAN001082_RS42615;Dbxref=GenBank:WP_000824293.1;Name=WP_000824293.1;gbkey=CDS;gene=gatB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462172.1;locus_tag=CFSAN001082_RS42615;product=PTS galactitol transporter subunit IIB;protein_id=WP_000824293.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	71803	72267	.	-	.	ID=gene-CFSAN001082_RS42620;Name=gatA;gbkey=Gene;gene=gatA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42620;old_locus_tag=CFSAN001082_19026
NZ_APAH01000387.1	Protein Homology	CDS	71803	72267	.	-	0	ID=cds-WP_000080445.1;Parent=gene-CFSAN001082_RS42620;Dbxref=GenBank:WP_000080445.1;Name=WP_000080445.1;gbkey=CDS;gene=gatA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462171.1;locus_tag=CFSAN001082_RS42620;product=PTS galactitol transporter subunit IIA;protein_id=WP_000080445.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	72282	73553	.	-	.	ID=gene-CFSAN001082_RS42625;Name=gatZ;gbkey=Gene;gene=gatZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42625;old_locus_tag=CFSAN001082_19031
NZ_APAH01000387.1	Protein Homology	CDS	72282	73553	.	-	0	ID=cds-WP_001805535.1;Parent=gene-CFSAN001082_RS42625;Dbxref=GenBank:WP_001805535.1;Name=WP_001805535.1;gbkey=CDS;gene=gatZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462170.1;locus_tag=CFSAN001082_RS42625;product=tagatose-bisphosphate aldolase subunit GatZ;protein_id=WP_001805535.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	73673	74527	.	-	.	ID=gene-CFSAN001082_RS42630;Name=CFSAN001082_RS42630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42630;old_locus_tag=CFSAN001082_19036
NZ_APAH01000387.1	Protein Homology	CDS	73673	74527	.	-	0	ID=cds-WP_000469979.1;Parent=gene-CFSAN001082_RS42630;Dbxref=GenBank:WP_000469979.1;Name=WP_000469979.1;Ontology_term=GO:0005975,GO:0008270,GO:0009025;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,tagatose-bisphosphate aldolase activity|0009025||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462166.1;locus_tag=CFSAN001082_RS42630;product=tagatose bisphosphate family class II aldolase;protein_id=WP_000469979.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	74785	76356	.	-	.	ID=gene-CFSAN001082_RS42635;Name=garD;gbkey=Gene;gene=garD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42635;old_locus_tag=CFSAN001082_19041
NZ_APAH01000387.1	Protein Homology	CDS	74785	76356	.	-	0	ID=cds-WP_023254751.1;Parent=gene-CFSAN001082_RS42635;Dbxref=GenBank:WP_023254751.1;Name=WP_023254751.1;Ontology_term=GO:0046392,GO:0008867;gbkey=CDS;gene=garD;go_function=galactarate dehydratase activity|0008867||IEA;go_process=galactarate catabolic process|0046392||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462163.1;locus_tag=CFSAN001082_RS42635;product=galactarate dehydratase;protein_id=WP_023254751.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	76886	77656	.	+	.	ID=gene-CFSAN001082_RS42640;Name=garL;gbkey=Gene;gene=garL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42640;old_locus_tag=CFSAN001082_19046
NZ_APAH01000387.1	Protein Homology	CDS	76886	77656	.	+	0	ID=cds-WP_023254752.1;Parent=gene-CFSAN001082_RS42640;Dbxref=GenBank:WP_023254752.1;Name=WP_023254752.1;Ontology_term=GO:0019394,GO:0008672;gbkey=CDS;gene=garL;go_function=2-dehydro-3-deoxyglucarate aldolase activity|0008672||IEA;go_process=glucarate catabolic process|0019394||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462162.1;locus_tag=CFSAN001082_RS42640;product=2-dehydro-3-deoxyglucarate aldolase;protein_id=WP_023254752.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	77682	78572	.	+	.	ID=gene-CFSAN001082_RS42645;Name=garR;gbkey=Gene;gene=garR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42645;old_locus_tag=CFSAN001082_19051
NZ_APAH01000387.1	Protein Homology	CDS	77682	78572	.	+	0	ID=cds-WP_000178106.1;Parent=gene-CFSAN001082_RS42645;Dbxref=GenBank:WP_000178106.1;Name=WP_000178106.1;Ontology_term=GO:0046487,GO:0008679;gbkey=CDS;gene=garR;go_function=2-hydroxy-3-oxopropionate reductase activity|0008679||IEA;go_process=glyoxylate metabolic process|0046487||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462161.1;locus_tag=CFSAN001082_RS42645;product=2-hydroxy-3-oxopropionate reductase;protein_id=WP_000178106.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	78670	79815	.	+	.	ID=gene-CFSAN001082_RS42650;Name=garK;gbkey=Gene;gene=garK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42650;old_locus_tag=CFSAN001082_19056
NZ_APAH01000387.1	Protein Homology	CDS	78670	79815	.	+	0	ID=cds-WP_000706458.1;Parent=gene-CFSAN001082_RS42650;Dbxref=GenBank:WP_000706458.1;Name=WP_000706458.1;Ontology_term=GO:0031388,GO:0008887;gbkey=CDS;gene=garK;go_function=glycerate kinase activity|0008887||IEA;go_process=organic acid phosphorylation|0031388||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462160.1;locus_tag=CFSAN001082_RS42650;product=glycerate 2-kinase;protein_id=WP_000706458.1;transl_table=11
NZ_APAH01000387.1	RefSeq	gene	79848	80222	.	+	.	ID=gene-CFSAN001082_RS42655;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=RNase_P_RNA;locus_tag=CFSAN001082_RS42655
NZ_APAH01000387.1	cmsearch	RNase_P_RNA	79848	80222	.	+	.	ID=rna-CFSAN001082_RS42655;Parent=gene-CFSAN001082_RS42655;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS42655;product=RNase P RNA component class A
NZ_APAH01000387.1	cmsearch	exon	79848	80222	.	+	.	ID=exon-CFSAN001082_RS42655-1;Parent=rna-CFSAN001082_RS42655;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS42655;product=RNase P RNA component class A
##sequence-region NZ_APAH01000388.1 1 999
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000388.1	RefSeq	region	1	999	.	+	.	ID=NZ_APAH01000388.1:1..999;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000388.1	RefSeq	gene	1	971	.	+	.	ID=gene-CFSAN001082_RS42660;Name=CFSAN001082_RS42660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42660;old_locus_tag=CFSAN001082_19065;partial=true;start_range=.,1
NZ_APAH01000388.1	Protein Homology	CDS	1	971	.	+	2	ID=cds-WP_023254753.1;Parent=gene-CFSAN001082_RS42660;Dbxref=GenBank:WP_023254753.1;Name=WP_023254753.1;Ontology_term=GO:0000271,GO:0016779;gbkey=CDS;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310863.1;locus_tag=CFSAN001082_RS42660;partial=true;product=mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase;protein_id=WP_023254753.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000389.1 1 25373
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000389.1	RefSeq	region	1	25373	.	+	.	ID=NZ_APAH01000389.1:1..25373;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000389.1	RefSeq	gene	111	2282	.	-	.	ID=gene-CFSAN001082_RS42665;Name=CFSAN001082_RS42665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42665;old_locus_tag=CFSAN001082_19070
NZ_APAH01000389.1	Protein Homology	CDS	111	2282	.	-	0	ID=cds-WP_023254754.1;Parent=gene-CFSAN001082_RS42665;Dbxref=GenBank:WP_023254754.1;Name=WP_023254754.1;Ontology_term=GO:1904047;gbkey=CDS;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462083.1;locus_tag=CFSAN001082_RS42665;product=YgiQ family radical SAM protein;protein_id=WP_023254754.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	2770	3753	.	+	.	ID=gene-CFSAN001082_RS42670;Name=CFSAN001082_RS42670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42670;old_locus_tag=CFSAN001082_19075
NZ_APAH01000389.1	Protein Homology	CDS	2770	3753	.	+	0	ID=cds-WP_023254755.1;Parent=gene-CFSAN001082_RS42670;Dbxref=GenBank:WP_023254755.1;Name=WP_023254755.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462084.1;locus_tag=CFSAN001082_RS42670;product=TRAP transporter substrate-binding protein;protein_id=WP_023254755.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	3795	4277	.	+	.	ID=gene-CFSAN001082_RS42675;Name=CFSAN001082_RS42675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42675;old_locus_tag=CFSAN001082_19080
NZ_APAH01000389.1	Protein Homology	CDS	3795	4277	.	+	0	ID=cds-WP_001221825.1;Parent=gene-CFSAN001082_RS42675;Dbxref=GenBank:WP_001221825.1;Name=WP_001221825.1;Ontology_term=GO:0015740,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=C4-dicarboxylate transport|0015740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462085.1;locus_tag=CFSAN001082_RS42675;product=TRAP transporter small permease;protein_id=WP_001221825.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	4288	5595	.	+	.	ID=gene-CFSAN001082_RS42680;Name=CFSAN001082_RS42680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42680;old_locus_tag=CFSAN001082_19085
NZ_APAH01000389.1	Protein Homology	CDS	4288	5595	.	+	0	ID=cds-WP_001650715.1;Parent=gene-CFSAN001082_RS42680;Dbxref=GenBank:WP_001650715.1;Name=WP_001650715.1;Ontology_term=GO:0008643,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462086.1;locus_tag=CFSAN001082_RS42680;product=TRAP transporter large permease;protein_id=WP_001650715.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	5640	7052	.	-	.	ID=gene-CFSAN001082_RS42685;Name=ftsP;gbkey=Gene;gene=ftsP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42685;old_locus_tag=CFSAN001082_19090
NZ_APAH01000389.1	Protein Homology	CDS	5640	7052	.	-	0	ID=cds-WP_000010658.1;Parent=gene-CFSAN001082_RS42685;Dbxref=GenBank:WP_000010658.1;Name=WP_000010658.1;Ontology_term=GO:0043093,GO:0016491;gbkey=CDS;gene=ftsP;go_function=oxidoreductase activity|0016491||IEA;go_process=FtsZ-dependent cytokinesis|0043093||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462087.1;locus_tag=CFSAN001082_RS42685;product=cell division protein FtsP;protein_id=WP_000010658.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	7126	7863	.	-	.	ID=gene-CFSAN001082_RS42690;Name=plsC;gbkey=Gene;gene=plsC;gene_biotype=protein_coding;gene_synonym=parF;locus_tag=CFSAN001082_RS42690;old_locus_tag=CFSAN001082_19095
NZ_APAH01000389.1	Protein Homology	CDS	7126	7863	.	-	0	ID=cds-WP_000965730.1;Parent=gene-CFSAN001082_RS42690;Dbxref=GenBank:WP_000965730.1;Name=WP_000965730.1;gbkey=CDS;gene=plsC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462088.1;locus_tag=CFSAN001082_RS42690;product=1-acylglycerol-3-phosphate O-acyltransferase;protein_id=WP_000965730.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	8120	10378	.	-	.	ID=gene-CFSAN001082_RS42695;Name=parC;gbkey=Gene;gene=parC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42695;old_locus_tag=CFSAN001082_19100
NZ_APAH01000389.1	Protein Homology	CDS	8120	10378	.	-	0	ID=cds-WP_001281861.1;Parent=gene-CFSAN001082_RS42695;Dbxref=GenBank:WP_001281861.1;Name=WP_001281861.1;Ontology_term=GO:0006265,GO:0003918,GO:0009340;gbkey=CDS;gene=parC;go_component=DNA topoisomerase IV complex|0009340||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462089.1;locus_tag=CFSAN001082_RS42695;product=DNA topoisomerase IV subunit A;protein_id=WP_001281861.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	10489	11355	.	-	.	ID=gene-CFSAN001082_RS42700;Name=CFSAN001082_RS42700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42700;old_locus_tag=CFSAN001082_19105
NZ_APAH01000389.1	Protein Homology	CDS	10489	11355	.	-	0	ID=cds-WP_017441056.1;Parent=gene-CFSAN001082_RS42700;Dbxref=GenBank:WP_017441056.1;Name=WP_017441056.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462090.1;locus_tag=CFSAN001082_RS42700;product=AraC family transcriptional regulator;protein_id=WP_017441056.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	11427	11819	.	-	.	ID=gene-CFSAN001082_RS42705;Name=CFSAN001082_RS42705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42705;old_locus_tag=CFSAN001082_19110
NZ_APAH01000389.1	Protein Homology	CDS	11427	11819	.	-	0	ID=cds-WP_000731552.1;Parent=gene-CFSAN001082_RS42705;Dbxref=GenBank:WP_000731552.1;Name=WP_000731552.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462091.1;locus_tag=CFSAN001082_RS42705;product=YgiW/YdeI family stress tolerance OB fold protein;protein_id=WP_000731552.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	11971	12630	.	+	.	ID=gene-CFSAN001082_RS42710;Name=qseB;gbkey=Gene;gene=qseB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42710;old_locus_tag=CFSAN001082_19115
NZ_APAH01000389.1	Protein Homology	CDS	11971	12630	.	+	0	ID=cds-WP_001221574.1;Parent=gene-CFSAN001082_RS42710;Dbxref=GenBank:WP_001221574.1;Name=WP_001221574.1;gbkey=CDS;gene=qseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462092.1;locus_tag=CFSAN001082_RS42710;product=quorum sensing response regulator transcription factor QseB;protein_id=WP_001221574.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	12627	13976	.	+	.	ID=gene-CFSAN001082_RS42715;Name=qseC;gbkey=Gene;gene=qseC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42715;old_locus_tag=CFSAN001082_19120
NZ_APAH01000389.1	Protein Homology	CDS	12627	13976	.	+	0	ID=cds-WP_017441055.1;Parent=gene-CFSAN001082_RS42715;Dbxref=GenBank:WP_017441055.1;Name=WP_017441055.1;Ontology_term=GO:0007165,GO:0000155;gbkey=CDS;gene=qseC;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462093.1;locus_tag=CFSAN001082_RS42715;product=quorum sensing histidine kinase QseC;protein_id=WP_017441055.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	14083	14664	.	+	.	ID=gene-CFSAN001082_RS42720;Name=CFSAN001082_RS42720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42720;old_locus_tag=CFSAN001082_19125
NZ_APAH01000389.1	Protein Homology	CDS	14083	14664	.	+	0	ID=cds-WP_000065416.1;Parent=gene-CFSAN001082_RS42720;Dbxref=GenBank:WP_000065416.1;Name=WP_000065416.1;Ontology_term=GO:0008753,GO:0010181,GO:0050136;gbkey=CDS;go_function=NADPH dehydrogenase (quinone) activity|0008753||IEA,FMN binding|0010181||IEA,NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462094.1;locus_tag=CFSAN001082_RS42720;product=NAD(P)H-dependent oxidoreductase;protein_id=WP_000065416.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	14696	15010	.	+	.	ID=gene-CFSAN001082_RS42725;Name=CFSAN001082_RS42725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42725;old_locus_tag=CFSAN001082_19130
NZ_APAH01000389.1	Protein Homology	CDS	14696	15010	.	+	0	ID=cds-WP_023254756.1;Parent=gene-CFSAN001082_RS42725;Dbxref=GenBank:WP_023254756.1;Name=WP_023254756.1;Ontology_term=GO:0017000,GO:0004497,GO:0016491;gbkey=CDS;go_function=monooxygenase activity|0004497||IEA,oxidoreductase activity|0016491||IEA;go_process=antibiotic biosynthetic process|0017000||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462095.1;locus_tag=CFSAN001082_RS42725;product=putative quinol monooxygenase;protein_id=WP_023254756.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	15135	17027	.	-	.	ID=gene-CFSAN001082_RS42730;Name=parE;gbkey=Gene;gene=parE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42730;old_locus_tag=CFSAN001082_19135
NZ_APAH01000389.1	Protein Homology	CDS	15135	17027	.	-	0	ID=cds-WP_000195318.1;Parent=gene-CFSAN001082_RS42730;Dbxref=GenBank:WP_000195318.1;Name=WP_000195318.1;Ontology_term=GO:0006265,GO:0003677,GO:0003918,GO:0005524,GO:0005694;gbkey=CDS;gene=parE;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462096.1;locus_tag=CFSAN001082_RS42730;product=DNA topoisomerase IV subunit B;protein_id=WP_000195318.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	17055	17636	.	-	.	ID=gene-CFSAN001082_RS42735;Name=yqiA;gbkey=Gene;gene=yqiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42735;old_locus_tag=CFSAN001082_19140
NZ_APAH01000389.1	Protein Homology	CDS	17055	17636	.	-	0	ID=cds-WP_000105725.1;Parent=gene-CFSAN001082_RS42735;Dbxref=GenBank:WP_000105725.1;Name=WP_000105725.1;gbkey=CDS;gene=yqiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462097.1;locus_tag=CFSAN001082_RS42735;product=esterase YqiA;protein_id=WP_000105725.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	17636	18463	.	-	.	ID=gene-CFSAN001082_RS42740;Name=cpdA;gbkey=Gene;gene=cpdA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42740;old_locus_tag=CFSAN001082_19145
NZ_APAH01000389.1	Protein Homology	CDS	17636	18463	.	-	0	ID=cds-WP_000444735.1;Parent=gene-CFSAN001082_RS42740;Dbxref=GenBank:WP_000444735.1;Name=WP_000444735.1;Ontology_term=GO:0004115;gbkey=CDS;gene=cpdA;go_function=3'%2C5'-cyclic-AMP phosphodiesterase activity|0004115||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462098.1;locus_tag=CFSAN001082_RS42740;product=3'%2C5'-cyclic-AMP phosphodiesterase;protein_id=WP_000444735.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	18488	18910	.	-	.	ID=gene-CFSAN001082_RS42745;Name=CFSAN001082_RS42745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42745;old_locus_tag=CFSAN001082_19150
NZ_APAH01000389.1	Protein Homology	CDS	18488	18910	.	-	0	ID=cds-WP_000833404.1;Parent=gene-CFSAN001082_RS42745;Dbxref=GenBank:WP_000833404.1;Name=WP_000833404.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462099.1;locus_tag=CFSAN001082_RS42745;product=DUF1249 family protein;protein_id=WP_000833404.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	18907	19539	.	-	.	ID=gene-CFSAN001082_RS42750;Name=nudF;gbkey=Gene;gene=nudF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42750;old_locus_tag=CFSAN001082_19155
NZ_APAH01000389.1	Protein Homology	CDS	18907	19539	.	-	0	ID=cds-WP_001231950.1;Parent=gene-CFSAN001082_RS42750;Dbxref=GenBank:WP_001231950.1;Name=WP_001231950.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;gene=nudF;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462100.1;locus_tag=CFSAN001082_RS42750;product=ADP-ribose diphosphatase;protein_id=WP_001231950.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	19740	21215	.	+	.	ID=gene-CFSAN001082_RS42755;Name=tolC;gbkey=Gene;gene=tolC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42755;old_locus_tag=CFSAN001082_19160
NZ_APAH01000389.1	Protein Homology	CDS	19740	21215	.	+	0	ID=cds-WP_072100461.1;Parent=gene-CFSAN001082_RS42755;Dbxref=GenBank:WP_072100461.1;Name=WP_072100461.1;Ontology_term=GO:0055085,GO:0015562;gbkey=CDS;gene=tolC;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462101.3;locus_tag=CFSAN001082_RS42755;product=outer membrane channel protein TolC;protein_id=WP_072100461.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	21428	22099	.	+	.	ID=gene-CFSAN001082_RS42760;Name=CFSAN001082_RS42760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42760;old_locus_tag=CFSAN001082_19165
NZ_APAH01000389.1	Protein Homology	CDS	21428	22099	.	+	0	ID=cds-WP_000831528.1;Parent=gene-CFSAN001082_RS42760;Dbxref=GenBank:WP_000831528.1;Name=WP_000831528.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462102.1;locus_tag=CFSAN001082_RS42760;product=DUF1190 family protein;protein_id=WP_000831528.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	22105	23268	.	+	.	ID=gene-CFSAN001082_RS42765;Name=CFSAN001082_RS42765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42765;old_locus_tag=CFSAN001082_19170
NZ_APAH01000389.1	Protein Homology	CDS	22105	23268	.	+	0	ID=cds-WP_000442834.1;Parent=gene-CFSAN001082_RS42765;Dbxref=GenBank:WP_000442834.1;Name=WP_000442834.1;Ontology_term=GO:0005524,GO:0016874,GO:0046872;gbkey=CDS;go_function=ATP binding|0005524||IEA,ligase activity|0016874||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462103.1;locus_tag=CFSAN001082_RS42765;product=glutathionylspermidine synthase family protein;protein_id=WP_000442834.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	23330	24118	.	-	.	ID=gene-CFSAN001082_RS42770;Name=ygiD;gbkey=Gene;gene=ygiD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42770;old_locus_tag=CFSAN001082_19175
NZ_APAH01000389.1	Protein Homology	CDS	23330	24118	.	-	0	ID=cds-WP_023205455.1;Parent=gene-CFSAN001082_RS42770;Dbxref=GenBank:WP_023205455.1;Name=WP_023205455.1;gbkey=CDS;gene=ygiD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001356237.1;locus_tag=CFSAN001082_RS42770;product=4%2C5-DOPA dioxygenase extradiol;protein_id=WP_023205455.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	24259	25032	.	+	.	ID=gene-CFSAN001082_RS42775;Name=zupT;gbkey=Gene;gene=zupT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42775;old_locus_tag=CFSAN001082_19180
NZ_APAH01000389.1	Protein Homology	CDS	24259	25032	.	+	0	ID=cds-WP_000115871.1;Parent=gene-CFSAN001082_RS42775;Dbxref=GenBank:WP_000115871.1;Name=WP_000115871.1;gbkey=CDS;gene=zupT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462105.1;locus_tag=CFSAN001082_RS42775;product=zinc transporter ZupT;protein_id=WP_000115871.1;transl_table=11
NZ_APAH01000389.1	RefSeq	gene	25099	25275	.	-	.	ID=gene-CFSAN001082_RS49090;Name=CFSAN001082_RS49090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49090;old_locus_tag=CFSAN001082_19185
NZ_APAH01000389.1	Protein Homology	CDS	25099	25275	.	-	0	ID=cds-WP_000469259.1;Parent=gene-CFSAN001082_RS49090;Dbxref=GenBank:WP_000469259.1;Name=WP_000469259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518818.1;locus_tag=CFSAN001082_RS49090;product=hypothetical protein;protein_id=WP_000469259.1;transl_table=11
##sequence-region NZ_APAH01000390.1 1 10550
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000390.1	RefSeq	region	1	10550	.	+	.	ID=NZ_APAH01000390.1:1..10550;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000390.1	RefSeq	gene	110	511	.	-	.	ID=gene-CFSAN001082_RS48010;Name=CFSAN001082_RS48010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48010
NZ_APAH01000390.1	Protein Homology	CDS	110	511	.	-	0	ID=cds-WP_023888773.1;Parent=gene-CFSAN001082_RS48010;Dbxref=GenBank:WP_023888773.1;Name=WP_023888773.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448047.1;locus_tag=CFSAN001082_RS48010;product=hypothetical protein;protein_id=WP_023888773.1;transl_table=11
NZ_APAH01000390.1	RefSeq	gene	1030	1305	.	+	.	ID=gene-CFSAN001082_RS42785;Name=CFSAN001082_RS42785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42785;old_locus_tag=CFSAN001082_19190
NZ_APAH01000390.1	Protein Homology	CDS	1030	1305	.	+	0	ID=cds-WP_001120770.1;Parent=gene-CFSAN001082_RS42785;Dbxref=GenBank:WP_001120770.1;Name=WP_001120770.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460587.1;locus_tag=CFSAN001082_RS42785;product=metal/formaldehyde-sensitive transcriptional repressor;protein_id=WP_001120770.1;transl_table=11
NZ_APAH01000390.1	RefSeq	gene	1337	2455	.	+	.	ID=gene-CFSAN001082_RS42790;Name=CFSAN001082_RS42790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42790;old_locus_tag=CFSAN001082_19195
NZ_APAH01000390.1	Protein Homology	CDS	1337	2455	.	+	0	ID=cds-WP_017441318.1;Parent=gene-CFSAN001082_RS42790;Dbxref=GenBank:WP_017441318.1;Name=WP_017441318.1;Ontology_term=GO:0004022,GO:0008270,GO:0051903;gbkey=CDS;go_function=alcohol dehydrogenase (NAD+) activity|0004022||IEA,zinc ion binding|0008270||IEA,S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity|0051903||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460586.1;locus_tag=CFSAN001082_RS42790;product=S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase;protein_id=WP_017441318.1;transl_table=11
NZ_APAH01000390.1	RefSeq	gene	2624	4249	.	+	.	ID=gene-CFSAN001082_RS42795;Name=CFSAN001082_RS42795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42795;old_locus_tag=CFSAN001082_19200
NZ_APAH01000390.1	Protein Homology	CDS	2624	4249	.	+	0	ID=cds-WP_000528480.1;Parent=gene-CFSAN001082_RS42795;Dbxref=GenBank:WP_000528480.1;Name=WP_000528480.1;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460585.2;locus_tag=CFSAN001082_RS42795;product=methyl-accepting chemotaxis protein;protein_id=WP_000528480.1;transl_table=11
NZ_APAH01000390.1	RefSeq	gene	4310	5233	.	-	.	ID=gene-CFSAN001082_RS42800;Name=CFSAN001082_RS42800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42800;old_locus_tag=CFSAN001082_19205
NZ_APAH01000390.1	Protein Homology	CDS	4310	5233	.	-	0	ID=cds-WP_000414259.1;Parent=gene-CFSAN001082_RS42800;Dbxref=GenBank:WP_000414259.1;Name=WP_000414259.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460584.1;locus_tag=CFSAN001082_RS42800;product=LysR substrate-binding domain-containing protein;protein_id=WP_000414259.1;transl_table=11
NZ_APAH01000390.1	RefSeq	gene	5526	6869	.	+	.	ID=gene-CFSAN001082_RS42805;Name=hglS;gbkey=Gene;gene=hglS;gene_biotype=protein_coding;gene_synonym=ydcJ;locus_tag=CFSAN001082_RS42805;old_locus_tag=CFSAN001082_19210
NZ_APAH01000390.1	Protein Homology	CDS	5526	6869	.	+	0	ID=cds-WP_000024092.1;Parent=gene-CFSAN001082_RS42805;Dbxref=GenBank:WP_000024092.1;Name=WP_000024092.1;Ontology_term=GO:0051213;gbkey=CDS;gene=hglS;go_function=dioxygenase activity|0051213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460583.1;locus_tag=CFSAN001082_RS42805;product=2-oxoadipate dioxygenase/decarboxylase HglS;protein_id=WP_000024092.1;transl_table=11
NZ_APAH01000390.1	RefSeq	gene	6918	8426	.	+	.	ID=gene-CFSAN001082_RS42810;Name=CFSAN001082_RS42810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42810;old_locus_tag=CFSAN001082_19215
NZ_APAH01000390.1	Protein Homology	CDS	6918	8426	.	+	0	ID=cds-WP_023182165.1;Parent=gene-CFSAN001082_RS42810;Dbxref=GenBank:WP_023182165.1;Name=WP_023182165.1;Ontology_term=GO:0016298,GO:0052689;gbkey=CDS;go_function=lipase activity|0016298||IEA,carboxylic ester hydrolase activity|0052689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460582.1;locus_tag=CFSAN001082_RS42810;product=carboxylesterase/lipase family protein;protein_id=WP_023182165.1;transl_table=11
NZ_APAH01000390.1	RefSeq	gene	8646	10301	.	+	.	ID=gene-CFSAN001082_RS42815;Name=CFSAN001082_RS42815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42815;old_locus_tag=CFSAN001082_19220
NZ_APAH01000390.1	Protein Homology	CDS	8646	10301	.	+	0	ID=cds-WP_023254757.1;Parent=gene-CFSAN001082_RS42815;Dbxref=GenBank:WP_023254757.1;Name=WP_023254757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460581.1;locus_tag=CFSAN001082_RS42815;product=glucan biosynthesis protein D;protein_id=WP_023254757.1;transl_table=11
##sequence-region NZ_APAH01000391.1 1 9369
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000391.1	RefSeq	region	1	9369	.	+	.	ID=NZ_APAH01000391.1:1..9369;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000391.1	RefSeq	gene	1	589	.	-	.	ID=gene-CFSAN001082_RS42820;Name=gloB;gbkey=Gene;gene=gloB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42820;old_locus_tag=CFSAN001082_19225;partial=true;start_range=.,1
NZ_APAH01000391.1	Protein Homology	CDS	1	589	.	-	0	ID=cds-WP_023254758.1;Parent=gene-CFSAN001082_RS42820;Dbxref=GenBank:WP_023254758.1;Name=WP_023254758.1;Ontology_term=GO:0019243,GO:0004416;gbkey=CDS;gene=gloB;go_function=hydroxyacylglutathione hydrolase activity|0004416||IEA;go_process=methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione|0019243||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459259.1;locus_tag=CFSAN001082_RS42820;partial=true;product=hydroxyacylglutathione hydrolase;protein_id=WP_023254758.1;start_range=.,1;transl_table=11
NZ_APAH01000391.1	RefSeq	gene	624	1346	.	+	.	ID=gene-CFSAN001082_RS42825;Name=CFSAN001082_RS42825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42825;old_locus_tag=CFSAN001082_19230
NZ_APAH01000391.1	Protein Homology	CDS	624	1346	.	+	0	ID=cds-WP_000801238.1;Parent=gene-CFSAN001082_RS42825;Dbxref=GenBank:WP_000801238.1;Name=WP_000801238.1;Ontology_term=GO:0032259,GO:0008168,GO:0008757,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459260.1;locus_tag=CFSAN001082_RS42825;product=class I SAM-dependent methyltransferase;protein_id=WP_000801238.1;transl_table=11
NZ_APAH01000391.1	RefSeq	gene	1343	1810	.	-	.	ID=gene-CFSAN001082_RS42830;Name=rnhA;gbkey=Gene;gene=rnhA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42830;old_locus_tag=CFSAN001082_19235
NZ_APAH01000391.1	Protein Homology	CDS	1343	1810	.	-	0	ID=cds-WP_000917872.1;Parent=gene-CFSAN001082_RS42830;Dbxref=GenBank:WP_000917872.1;Name=WP_000917872.1;Ontology_term=GO:0003676,GO:0004523;gbkey=CDS;gene=rnhA;go_function=nucleic acid binding|0003676||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459261.1;locus_tag=CFSAN001082_RS42830;product=ribonuclease HI;protein_id=WP_000917872.1;transl_table=11
NZ_APAH01000391.1	RefSeq	gene	1874	2605	.	+	.	ID=gene-CFSAN001082_RS42835;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42835;old_locus_tag=CFSAN001082_19240
NZ_APAH01000391.1	Protein Homology	CDS	1874	2605	.	+	0	ID=cds-WP_001670675.1;Parent=gene-CFSAN001082_RS42835;Dbxref=GenBank:WP_001670675.1;Name=WP_001670675.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=dnaQ;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459262.1;locus_tag=CFSAN001082_RS42835;product=DNA polymerase III subunit epsilon;protein_id=WP_001670675.1;transl_table=11
NZ_APAH01000391.1	RefSeq	gene	2739	2815	.	+	.	ID=gene-CFSAN001082_RS42840;Name=CFSAN001082_RS42840;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS42840;old_locus_tag=CFSAN001082_t19277
NZ_APAH01000391.1	tRNAscan-SE	tRNA	2739	2815	.	+	.	ID=rna-CFSAN001082_RS42840;Parent=gene-CFSAN001082_RS42840;anticodon=(pos:2773..2775);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS42840;product=tRNA-Asp
NZ_APAH01000391.1	tRNAscan-SE	exon	2739	2815	.	+	.	ID=exon-CFSAN001082_RS42840-1;Parent=rna-CFSAN001082_RS42840;anticodon=(pos:2773..2775);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS42840;product=tRNA-Asp
NZ_APAH01000391.1	RefSeq	gene	3138	4193	.	-	.	ID=gene-CFSAN001082_RS42845;Name=CFSAN001082_RS42845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42845;old_locus_tag=CFSAN001082_19245
NZ_APAH01000391.1	Protein Homology	CDS	3138	4193	.	-	0	ID=cds-WP_000367619.1;Parent=gene-CFSAN001082_RS42845;Dbxref=GenBank:WP_000367619.1;Name=WP_000367619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459263.1;locus_tag=CFSAN001082_RS42845;product=ImpA family type VI secretion system protein;protein_id=WP_000367619.1;transl_table=11
NZ_APAH01000391.1	RefSeq	gene	4204	5199	.	-	.	ID=gene-CFSAN001082_RS42850;Name=tssG;gbkey=Gene;gene=tssG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42850;old_locus_tag=CFSAN001082_19250
NZ_APAH01000391.1	Protein Homology	CDS	4204	5199	.	-	0	ID=cds-WP_001658733.1;Parent=gene-CFSAN001082_RS42850;Dbxref=GenBank:WP_001658733.1;Name=WP_001658733.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssG;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459264.1;locus_tag=CFSAN001082_RS42850;product=type VI secretion system baseplate subunit TssG;protein_id=WP_001658733.1;transl_table=11
NZ_APAH01000391.1	RefSeq	gene	5196	7079	.	-	.	ID=gene-CFSAN001082_RS42855;Name=tssF;gbkey=Gene;gene=tssF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42855;old_locus_tag=CFSAN001082_19255
NZ_APAH01000391.1	Protein Homology	CDS	5196	7079	.	-	0	ID=cds-WP_023254759.1;Parent=gene-CFSAN001082_RS42855;Dbxref=GenBank:WP_023254759.1;Name=WP_023254759.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssF;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459265.1;locus_tag=CFSAN001082_RS42855;product=type VI secretion system baseplate subunit TssF;protein_id=WP_023254759.1;transl_table=11
NZ_APAH01000391.1	RefSeq	gene	7095	7589	.	-	.	ID=gene-CFSAN001082_RS42860;Name=tssE;gbkey=Gene;gene=tssE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42860;old_locus_tag=CFSAN001082_19260
NZ_APAH01000391.1	Protein Homology	CDS	7095	7589	.	-	0	ID=cds-WP_000108007.1;Parent=gene-CFSAN001082_RS42860;Dbxref=GenBank:WP_000108007.1;Name=WP_000108007.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssE;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459266.1;locus_tag=CFSAN001082_RS42860;product=type VI secretion system baseplate subunit TssE;protein_id=WP_000108007.1;transl_table=11
NZ_APAH01000391.1	RefSeq	gene	7586	8410	.	-	.	ID=gene-CFSAN001082_RS42865;Name=CFSAN001082_RS42865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42865;old_locus_tag=CFSAN001082_19265
NZ_APAH01000391.1	Protein Homology	CDS	7586	8410	.	-	0	ID=cds-WP_017442152.1;Parent=gene-CFSAN001082_RS42865;Dbxref=GenBank:WP_017442152.1;Name=WP_017442152.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459267.1;locus_tag=CFSAN001082_RS42865;product=type VI secretion system accessory protein TagJ;protein_id=WP_017442152.1;transl_table=11
NZ_APAH01000391.1	RefSeq	gene	8397	9299	.	-	.	ID=gene-CFSAN001082_RS42870;Name=tagK;gbkey=Gene;gene=tagK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42870;old_locus_tag=CFSAN001082_19270
NZ_APAH01000391.1	Protein Homology	CDS	8397	9299	.	-	0	ID=cds-WP_001524811.1;Parent=gene-CFSAN001082_RS42870;Dbxref=GenBank:WP_001524811.1;Name=WP_001524811.1;gbkey=CDS;gene=tagK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459268.1;locus_tag=CFSAN001082_RS42870;product=type VI secretion system-associated protein TagK;protein_id=WP_001524811.1;transl_table=11
##sequence-region NZ_APAH01000392.1 1 11022
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000392.1	RefSeq	region	1	11022	.	+	.	ID=NZ_APAH01000392.1:1..11022;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000392.1	RefSeq	gene	43	678	.	+	.	ID=gene-CFSAN001082_RS42875;Name=comR;gbkey=Gene;gene=comR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42875;old_locus_tag=CFSAN001082_19277
NZ_APAH01000392.1	Protein Homology	CDS	43	678	.	+	0	ID=cds-WP_000205986.1;Parent=gene-CFSAN001082_RS42875;Dbxref=GenBank:WP_000205986.1;Name=WP_000205986.1;gbkey=CDS;gene=comR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460183.1;locus_tag=CFSAN001082_RS42875;product=TetR family copper-responsive transcriptional repressor ComR;protein_id=WP_000205986.1;transl_table=11
NZ_APAH01000392.1	RefSeq	gene	752	1291	.	-	.	ID=gene-CFSAN001082_RS42880;Name=CFSAN001082_RS42880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42880;old_locus_tag=CFSAN001082_19282
NZ_APAH01000392.1	Protein Homology	CDS	752	1291	.	-	0	ID=cds-WP_001043449.1;Parent=gene-CFSAN001082_RS42880;Dbxref=GenBank:WP_001043449.1;Name=WP_001043449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460182.1;locus_tag=CFSAN001082_RS42880;product=glycine zipper 2TM domain-containing protein;protein_id=WP_001043449.1;transl_table=11
NZ_APAH01000392.1	RefSeq	gene	1470	2774	.	-	.	ID=gene-CFSAN001082_RS42885;Name=ndh;gbkey=Gene;gene=ndh;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42885;old_locus_tag=CFSAN001082_19287
NZ_APAH01000392.1	Protein Homology	CDS	1470	2774	.	-	0	ID=cds-WP_000211053.1;Parent=gene-CFSAN001082_RS42885;Dbxref=GenBank:WP_000211053.1;Name=WP_000211053.1;gbkey=CDS;gene=ndh;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017384716.1;locus_tag=CFSAN001082_RS42885;product=NADH-quinone dehydrogenase;protein_id=WP_000211053.1;transl_table=11
NZ_APAH01000392.1	RefSeq	gene	3028	3570	.	-	.	ID=gene-CFSAN001082_RS42890;Name=ycfP;gbkey=Gene;gene=ycfP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42890;old_locus_tag=CFSAN001082_19292
NZ_APAH01000392.1	Protein Homology	CDS	3028	3570	.	-	0	ID=cds-WP_000587945.1;Parent=gene-CFSAN001082_RS42890;Dbxref=GenBank:WP_000587945.1;Name=WP_000587945.1;gbkey=CDS;gene=ycfP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126033.1;locus_tag=CFSAN001082_RS42890;product=alpha/beta hydrolase YcfP;protein_id=WP_000587945.1;transl_table=11
NZ_APAH01000392.1	RefSeq	gene	3595	4620	.	-	.	ID=gene-CFSAN001082_RS42895;Name=nagZ;gbkey=Gene;gene=nagZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42895;old_locus_tag=CFSAN001082_19297
NZ_APAH01000392.1	Protein Homology	CDS	3595	4620	.	-	0	ID=cds-WP_000529340.1;Parent=gene-CFSAN001082_RS42895;Dbxref=GenBank:WP_000529340.1;Name=WP_000529340.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=nagZ;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460179.1;locus_tag=CFSAN001082_RS42895;product=beta-N-acetylhexosaminidase;protein_id=WP_000529340.1;transl_table=11
NZ_APAH01000392.1	RefSeq	gene	4631	5455	.	-	.	ID=gene-CFSAN001082_RS42900;Name=thiK;gbkey=Gene;gene=thiK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42900;old_locus_tag=CFSAN001082_19302
NZ_APAH01000392.1	Protein Homology	CDS	4631	5455	.	-	0	ID=cds-WP_001257320.1;Parent=gene-CFSAN001082_RS42900;Dbxref=GenBank:WP_001257320.1;Name=WP_001257320.1;Ontology_term=GO:0006772,GO:0016310,GO:0019165;gbkey=CDS;gene=thiK;go_function=thiamine kinase activity|0019165||IEA;go_process=thiamine metabolic process|0006772||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460178.1;locus_tag=CFSAN001082_RS42900;product=thiamine kinase;protein_id=WP_001257320.1;transl_table=11
NZ_APAH01000392.1	RefSeq	gene	5436	6074	.	-	.	ID=gene-CFSAN001082_RS42905;Name=lpoB;gbkey=Gene;gene=lpoB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42905;old_locus_tag=CFSAN001082_19307
NZ_APAH01000392.1	Protein Homology	CDS	5436	6074	.	-	0	ID=cds-WP_000164355.1;Parent=gene-CFSAN001082_RS42905;Dbxref=GenBank:WP_000164355.1;Name=WP_000164355.1;gbkey=CDS;gene=lpoB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460177.1;locus_tag=CFSAN001082_RS42905;product=penicillin-binding protein activator LpoB;protein_id=WP_000164355.1;transl_table=11
NZ_APAH01000392.1	RefSeq	gene	6088	6462	.	-	.	ID=gene-CFSAN001082_RS42910;Name=CFSAN001082_RS42910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42910;old_locus_tag=CFSAN001082_19312
NZ_APAH01000392.1	Protein Homology	CDS	6088	6462	.	-	0	ID=cds-WP_000589563.1;Parent=gene-CFSAN001082_RS42910;Dbxref=GenBank:WP_000589563.1;Name=WP_000589563.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460176.1;locus_tag=CFSAN001082_RS42910;product=YcfL family protein;protein_id=WP_000589563.1;transl_table=11
NZ_APAH01000392.1	RefSeq	gene	6465	6824	.	-	.	ID=gene-CFSAN001082_RS42915;Name=hinT;gbkey=Gene;gene=hinT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42915;old_locus_tag=CFSAN001082_19317
NZ_APAH01000392.1	Protein Homology	CDS	6465	6824	.	-	0	ID=cds-WP_001532068.1;Parent=gene-CFSAN001082_RS42915;Dbxref=GenBank:WP_001532068.1;Name=WP_001532068.1;gbkey=CDS;gene=hinT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460175.1;locus_tag=CFSAN001082_RS42915;product=purine nucleoside phosphoramidase;protein_id=WP_001532068.1;transl_table=11
NZ_APAH01000392.1	RefSeq	gene	7166	9340	.	+	.	ID=gene-CFSAN001082_RS42920;Name=fhuE;gbkey=Gene;gene=fhuE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42920;old_locus_tag=CFSAN001082_19322
NZ_APAH01000392.1	Protein Homology	CDS	7166	9340	.	+	0	ID=cds-WP_023254760.1;Parent=gene-CFSAN001082_RS42920;Dbxref=GenBank:WP_023254760.1;Name=WP_023254760.1;Ontology_term=GO:0015891,GO:0015344,GO:0038023,GO:0009279;gbkey=CDS;gene=fhuE;go_component=cell outer membrane|0009279||IEA;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA,signaling receptor activity|0038023||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460174.1;locus_tag=CFSAN001082_RS42920;product=ferric-rhodotorulic acid/ferric-coprogen receptor FhuE;protein_id=WP_023254760.1;transl_table=11
NZ_APAH01000392.1	RefSeq	gene	9425	10858	.	-	.	ID=gene-CFSAN001082_RS42925;Name=ptsG;gbkey=Gene;gene=ptsG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42925;old_locus_tag=CFSAN001082_19327
NZ_APAH01000392.1	Protein Homology	CDS	9425	10858	.	-	0	ID=cds-WP_000475705.1;Parent=gene-CFSAN001082_RS42925;Dbxref=GenBank:WP_000475705.1;Name=WP_000475705.1;Ontology_term=GO:0009401,GO:1904659,GO:0008982,GO:0055056;gbkey=CDS;gene=ptsG;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,D-glucose transmembrane transporter activity|0055056||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,D-glucose transmembrane transport|1904659||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460173.1;locus_tag=CFSAN001082_RS42925;product=PTS glucose transporter subunit IIBC;protein_id=WP_000475705.1;transl_table=11
##sequence-region NZ_APAH01000393.1 1 20167
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000393.1	RefSeq	region	1	20167	.	+	.	ID=NZ_APAH01000393.1:1..20167;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000393.1	RefSeq	gene	328	11802	.	+	.	ID=gene-CFSAN001082_RS42930;Name=bapA;gbkey=Gene;gene=bapA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42930;old_locus_tag=CFSAN001082_19332
NZ_APAH01000393.1	Protein Homology	CDS	328	11802	.	+	0	ID=cds-WP_023254761.1;Parent=gene-CFSAN001082_RS42930;Dbxref=GenBank:WP_023254761.1;Name=WP_023254761.1;gbkey=CDS;gene=bapA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001237670.1;locus_tag=CFSAN001082_RS42930;product=biofilm-associated protein BapA;protein_id=WP_023254761.1;transl_table=11
NZ_APAH01000393.1	RefSeq	gene	11867	13276	.	+	.	ID=gene-CFSAN001082_RS42935;Name=CFSAN001082_RS42935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42935;old_locus_tag=CFSAN001082_19337
NZ_APAH01000393.1	Protein Homology	CDS	11867	13276	.	+	0	ID=cds-WP_023254762.1;Parent=gene-CFSAN001082_RS42935;Dbxref=GenBank:WP_023254762.1;Name=WP_023254762.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461619.1;locus_tag=CFSAN001082_RS42935;product=TolC family outer membrane protein;protein_id=WP_023254762.1;transl_table=11
NZ_APAH01000393.1	RefSeq	gene	13273	15453	.	+	.	ID=gene-CFSAN001082_RS42940;Name=CFSAN001082_RS42940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42940;old_locus_tag=CFSAN001082_19342
NZ_APAH01000393.1	Protein Homology	CDS	13273	15453	.	+	0	ID=cds-WP_023254763.1;Parent=gene-CFSAN001082_RS42940;Dbxref=GenBank:WP_023254763.1;Name=WP_023254763.1;Ontology_term=GO:0055085,GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461620.1;locus_tag=CFSAN001082_RS42940;product=type I secretion system permease/ATPase;protein_id=WP_023254763.1;transl_table=11
NZ_APAH01000393.1	RefSeq	gene	15461	16624	.	+	.	ID=gene-CFSAN001082_RS42945;Name=CFSAN001082_RS42945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42945;old_locus_tag=CFSAN001082_19347
NZ_APAH01000393.1	Protein Homology	CDS	15461	16624	.	+	0	ID=cds-WP_072101449.1;Parent=gene-CFSAN001082_RS42945;Dbxref=GenBank:WP_072101449.1;Name=WP_072101449.1;Ontology_term=GO:0015031,GO:0030253,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,protein secretion by the type I secretion system|0030253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461621.1;locus_tag=CFSAN001082_RS42945;product=HlyD family type I secretion periplasmic adaptor subunit;protein_id=WP_072101449.1;transl_table=11
NZ_APAH01000393.1	RefSeq	gene	16696	17058	.	+	.	ID=gene-CFSAN001082_RS46335;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=tmRNA;locus_tag=CFSAN001082_RS46335
NZ_APAH01000393.1	cmsearch	tmRNA	16696	17058	.	+	.	ID=rna-CFSAN001082_RS46335;Parent=gene-CFSAN001082_RS46335;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46335;product=transfer-messenger RNA
NZ_APAH01000393.1	cmsearch	exon	16696	17058	.	+	.	ID=exon-CFSAN001082_RS46335-1;Parent=rna-CFSAN001082_RS46335;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS46335;product=transfer-messenger RNA
NZ_APAH01000393.1	RefSeq	gene	17156	17749	.	+	.	ID=gene-CFSAN001082_RS42950;Name=CFSAN001082_RS42950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42950;old_locus_tag=CFSAN001082_19357
NZ_APAH01000393.1	Protein Homology	CDS	17156	17749	.	+	0	ID=cds-WP_001142974.1;Parent=gene-CFSAN001082_RS42950;Dbxref=GenBank:WP_001142974.1;Name=WP_001142974.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001142974.1;locus_tag=CFSAN001082_RS42950;product=hypothetical protein;protein_id=WP_001142974.1;transl_table=11
NZ_APAH01000393.1	RefSeq	gene	18148	18951	.	+	.	ID=gene-CFSAN001082_RS42955;Name=CFSAN001082_RS42955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42955;old_locus_tag=CFSAN001082_19362
NZ_APAH01000393.1	Protein Homology	CDS	18148	18951	.	+	0	ID=cds-WP_000445376.1;Parent=gene-CFSAN001082_RS42955;Dbxref=GenBank:WP_000445376.1;Name=WP_000445376.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000445378.1;locus_tag=CFSAN001082_RS42955;product=DUF3800 domain-containing protein;protein_id=WP_000445376.1;transl_table=11
NZ_APAH01000393.1	RefSeq	pseudogene	20020	20167	.	+	.	ID=gene-CFSAN001082_RS48395;Name=CFSAN001082_RS48395;end_range=20167,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48395;old_locus_tag=CFSAN001082_19367;partial=true;pseudo=true
NZ_APAH01000393.1	Protein Homology	CDS	20020	20167	.	+	0	ID=cds-CFSAN001082_RS48395;Parent=gene-CFSAN001082_RS48395;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=20167,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461700.1;locus_tag=CFSAN001082_RS48395;partial=true;product=glycosyl transferase;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000394.1 1 14813
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000394.1	RefSeq	region	1	14813	.	+	.	ID=NZ_APAH01000394.1:1..14813;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000394.1	RefSeq	gene	139	204	.	+	.	ID=gene-CFSAN001082_RS0123910;Name=thrL;gbkey=Gene;gene=thrL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123910
NZ_APAH01000394.1	Protein Homology	CDS	139	204	.	+	0	ID=cds-WP_001575544.1;Parent=gene-CFSAN001082_RS0123910;Dbxref=GenBank:WP_001575544.1;Name=WP_001575544.1;Ontology_term=GO:0009088,GO:0031554,GO:0031556;gbkey=CDS;gene=thrL;go_process=threonine biosynthetic process|0009088||IEA,regulation of termination of DNA-templated transcription|0031554||IEA,transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459006.1;locus_tag=CFSAN001082_RS0123910;product=thr operon leader peptide;protein_id=WP_001575544.1;transl_table=11
NZ_APAH01000394.1	cmsearch	sequence_feature	140	260	.	+	.	ID=id-NZ_APAH01000394.1:140..260;Dbxref=RFAM:RF00506;Note=Thr leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5
NZ_APAH01000394.1	RefSeq	gene	286	2748	.	+	.	ID=gene-CFSAN001082_RS42960;Name=thrA;gbkey=Gene;gene=thrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42960;old_locus_tag=CFSAN001082_19372
NZ_APAH01000394.1	Protein Homology	CDS	286	2748	.	+	0	ID=cds-WP_023254765.1;Parent=gene-CFSAN001082_RS42960;Dbxref=GenBank:WP_023254765.1;Name=WP_023254765.1;Ontology_term=GO:0008652,GO:0009067,GO:0004072,GO:0004412,GO:0050661;gbkey=CDS;gene=thrA;go_function=aspartate kinase activity|0004072||IEA,homoserine dehydrogenase activity|0004412||IEA,NADP binding|0050661||IEA;go_process=amino acid biosynthetic process|0008652||IEA,aspartate family amino acid biosynthetic process|0009067||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124053.1;locus_tag=CFSAN001082_RS42960;product=bifunctional aspartate kinase/homoserine dehydrogenase I;protein_id=WP_023254765.1;transl_table=11
NZ_APAH01000394.1	RefSeq	gene	2750	3679	.	+	.	ID=gene-CFSAN001082_RS42965;Name=thrB;gbkey=Gene;gene=thrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42965;old_locus_tag=CFSAN001082_19377
NZ_APAH01000394.1	Protein Homology	CDS	2750	3679	.	+	0	ID=cds-WP_000241685.1;Parent=gene-CFSAN001082_RS42965;Dbxref=GenBank:WP_000241685.1;Name=WP_000241685.1;Ontology_term=GO:0009088,GO:0004413,GO:0005524;gbkey=CDS;gene=thrB;go_function=homoserine kinase activity|0004413||IEA,ATP binding|0005524||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459008.1;locus_tag=CFSAN001082_RS42965;product=homoserine kinase;protein_id=WP_000241685.1;transl_table=11
NZ_APAH01000394.1	RefSeq	gene	3683	4969	.	+	.	ID=gene-CFSAN001082_RS42970;Name=thrC;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42970;old_locus_tag=CFSAN001082_19382
NZ_APAH01000394.1	Protein Homology	CDS	3683	4969	.	+	0	ID=cds-WP_000781110.1;Parent=gene-CFSAN001082_RS42970;Dbxref=GenBank:WP_000781110.1;Name=WP_000781110.1;Ontology_term=GO:0009088,GO:0004795;gbkey=CDS;gene=thrC;go_function=threonine synthase activity|0004795||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459009.1;locus_tag=CFSAN001082_RS42970;product=threonine synthase;protein_id=WP_000781110.1;transl_table=11
NZ_APAH01000394.1	RefSeq	gene	5063	5836	.	-	.	ID=gene-CFSAN001082_RS42975;Name=yaaA;gbkey=Gene;gene=yaaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42975;old_locus_tag=CFSAN001082_19387
NZ_APAH01000394.1	Protein Homology	CDS	5063	5836	.	-	0	ID=cds-WP_000906175.1;Parent=gene-CFSAN001082_RS42975;Dbxref=GenBank:WP_000906175.1;Name=WP_000906175.1;gbkey=CDS;gene=yaaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459010.1;locus_tag=CFSAN001082_RS42975;product=peroxide stress protein YaaA;protein_id=WP_000906175.1;transl_table=11
NZ_APAH01000394.1	RefSeq	gene	5915	7345	.	-	.	ID=gene-CFSAN001082_RS42980;Name=CFSAN001082_RS42980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42980;old_locus_tag=CFSAN001082_19392
NZ_APAH01000394.1	Protein Homology	CDS	5915	7345	.	-	0	ID=cds-WP_001113818.1;Parent=gene-CFSAN001082_RS42980;Dbxref=GenBank:WP_001113818.1;Name=WP_001113818.1;Ontology_term=GO:0006814,GO:0006865,GO:0005283,GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid:sodium symporter activity|0005283||IEA,symporter activity|0015293||IEA;go_process=sodium ion transport|0006814||IEA,amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459011.1;locus_tag=CFSAN001082_RS42980;product=alanine/glycine:cation symporter family protein;protein_id=WP_001113818.1;transl_table=11
NZ_APAH01000394.1	RefSeq	gene	7614	8567	.	+	.	ID=gene-CFSAN001082_RS42985;Name=tal;gbkey=Gene;gene=tal;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42985;old_locus_tag=CFSAN001082_19397
NZ_APAH01000394.1	Protein Homology	CDS	7614	8567	.	+	0	ID=cds-WP_000130175.1;Parent=gene-CFSAN001082_RS42985;Dbxref=GenBank:WP_000130175.1;Name=WP_000130175.1;Ontology_term=GO:0006098,GO:0004801,GO:0005737;gbkey=CDS;gene=tal;go_component=cytoplasm|0005737||IEA;go_function=transaldolase activity|0004801||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459012.1;locus_tag=CFSAN001082_RS42985;product=transaldolase;protein_id=WP_000130175.1;transl_table=11
NZ_APAH01000394.1	RefSeq	gene	8678	9268	.	+	.	ID=gene-CFSAN001082_RS42990;Name=mog;gbkey=Gene;gene=mog;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42990;old_locus_tag=CFSAN001082_19402
NZ_APAH01000394.1	Protein Homology	CDS	8678	9268	.	+	0	ID=cds-WP_023254766.1;Parent=gene-CFSAN001082_RS42990;Dbxref=GenBank:WP_023254766.1;Name=WP_023254766.1;Ontology_term=GO:0006777;gbkey=CDS;gene=mog;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000380375.1;locus_tag=CFSAN001082_RS42990;product=molybdopterin adenylyltransferase;protein_id=WP_023254766.1;transl_table=11
NZ_APAH01000394.1	RefSeq	gene	9325	9891	.	-	.	ID=gene-CFSAN001082_RS42995;Name=satP;gbkey=Gene;gene=satP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS42995;old_locus_tag=CFSAN001082_19407
NZ_APAH01000394.1	Protein Homology	CDS	9325	9891	.	-	0	ID=cds-WP_023195070.1;Parent=gene-CFSAN001082_RS42995;Dbxref=GenBank:WP_023195070.1;Name=WP_023195070.1;Ontology_term=GO:0016020;gbkey=CDS;gene=satP;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459014.1;locus_tag=CFSAN001082_RS42995;product=acetate uptake transporter;protein_id=WP_023195070.1;transl_table=11
NZ_APAH01000394.1	RefSeq	gene	10041	10754	.	-	.	ID=gene-CFSAN001082_RS43000;Name=msyB;gbkey=Gene;gene=msyB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43000;old_locus_tag=CFSAN001082_19412
NZ_APAH01000394.1	Protein Homology	CDS	10041	10754	.	-	0	ID=cds-WP_001103477.1;Parent=gene-CFSAN001082_RS43000;Dbxref=GenBank:WP_001103477.1;Name=WP_001103477.1;gbkey=CDS;gene=msyB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459015.1;locus_tag=CFSAN001082_RS43000;product=acidic protein MsyB;protein_id=WP_001103477.1;transl_table=11
NZ_APAH01000394.1	RefSeq	gene	10790	11194	.	-	.	ID=gene-CFSAN001082_RS43005;Name=CFSAN001082_RS43005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43005;old_locus_tag=CFSAN001082_19417
NZ_APAH01000394.1	Protein Homology	CDS	10790	11194	.	-	0	ID=cds-WP_001258086.1;Parent=gene-CFSAN001082_RS43005;Dbxref=GenBank:WP_001258086.1;Name=WP_001258086.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459016.1;locus_tag=CFSAN001082_RS43005;product=DUF2541 family protein;protein_id=WP_001258086.1;transl_table=11
NZ_APAH01000394.1	RefSeq	gene	11543	13459	.	+	.	ID=gene-CFSAN001082_RS43010;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43010;old_locus_tag=CFSAN001082_19422
NZ_APAH01000394.1	Protein Homology	CDS	11543	13459	.	+	0	ID=cds-WP_000516126.1;Parent=gene-CFSAN001082_RS43010;Dbxref=GenBank:WP_000516126.1;Name=WP_000516126.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887;gbkey=CDS;gene=dnaK;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001737966.1;locus_tag=CFSAN001082_RS43010;product=molecular chaperone DnaK;protein_id=WP_000516126.1;transl_table=11
NZ_APAH01000394.1	RefSeq	gene	13545	14684	.	+	.	ID=gene-CFSAN001082_RS43015;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43015;old_locus_tag=CFSAN001082_19427
NZ_APAH01000394.1	Protein Homology	CDS	13545	14684	.	+	0	ID=cds-WP_001119009.1;Parent=gene-CFSAN001082_RS43015;Dbxref=GenBank:WP_001119009.1;Name=WP_001119009.1;Ontology_term=GO:0006457,GO:0009408,GO:0005515,GO:0005524;gbkey=CDS;gene=dnaJ;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA;go_process=protein folding|0006457||IEA,response to heat|0009408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459018.1;locus_tag=CFSAN001082_RS43015;product=molecular chaperone DnaJ;protein_id=WP_001119009.1;transl_table=11
##sequence-region NZ_APAH01000395.1 1 578
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000395.1	RefSeq	region	1	578	.	+	.	ID=NZ_APAH01000395.1:1..578;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000395.1	RefSeq	pseudogene	1	576	.	-	.	ID=gene-CFSAN001082_RS43020;Name=siiF;gbkey=Gene;gene=siiF;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS43020;old_locus_tag=CFSAN001082_19432;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000395.1	Protein Homology	CDS	1	576	.	-	0	ID=cds-CFSAN001082_RS43020;Parent=gene-CFSAN001082_RS43020;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=siiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463127.1;locus_tag=CFSAN001082_RS43020;partial=true;product=SPI-4 type I secretion system protein SiiF;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000396.1 1 12521
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000396.1	RefSeq	region	1	12521	.	+	.	ID=NZ_APAH01000396.1:1..12521;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000396.1	RefSeq	gene	80	685	.	+	.	ID=gene-CFSAN001082_RS43025;Name=CFSAN001082_RS43025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43025;old_locus_tag=CFSAN001082_19437
NZ_APAH01000396.1	Protein Homology	CDS	80	685	.	+	0	ID=cds-WP_001202375.1;Parent=gene-CFSAN001082_RS43025;Dbxref=GenBank:WP_001202375.1;Name=WP_001202375.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460046.1;locus_tag=CFSAN001082_RS43025;product=TfoX/Sxy family DNA transformation protein;protein_id=WP_001202375.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	672	2825	.	-	.	ID=gene-CFSAN001082_RS43030;Name=yccS;gbkey=Gene;gene=yccS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43030;old_locus_tag=CFSAN001082_19442
NZ_APAH01000396.1	Protein Homology	CDS	672	2825	.	-	0	ID=cds-WP_020898645.1;Parent=gene-CFSAN001082_RS43030;Dbxref=GenBank:WP_020898645.1;Name=WP_020898645.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yccS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460047.1;locus_tag=CFSAN001082_RS43030;product=YccS family putative transporter;protein_id=WP_020898645.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	2844	3290	.	-	.	ID=gene-CFSAN001082_RS43035;Name=CFSAN001082_RS43035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43035;old_locus_tag=CFSAN001082_19447
NZ_APAH01000396.1	Protein Homology	CDS	2844	3290	.	-	0	ID=cds-WP_001261222.1;Parent=gene-CFSAN001082_RS43035;Dbxref=GenBank:WP_001261222.1;Name=WP_001261222.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460048.1;locus_tag=CFSAN001082_RS43035;product=YccF domain-containing protein;protein_id=WP_001261222.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	3414	5468	.	+	.	ID=gene-CFSAN001082_RS43040;Name=helD;gbkey=Gene;gene=helD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43040;old_locus_tag=CFSAN001082_19452
NZ_APAH01000396.1	Protein Homology	CDS	3414	5468	.	+	0	ID=cds-WP_023254768.1;Parent=gene-CFSAN001082_RS43040;Dbxref=GenBank:WP_023254768.1;Name=WP_023254768.1;Ontology_term=GO:0003677,GO:0003678,GO:0005524;gbkey=CDS;gene=helD;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460049.1;locus_tag=CFSAN001082_RS43040;product=DNA helicase IV;protein_id=WP_023254768.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	5504	5962	.	-	.	ID=gene-CFSAN001082_RS43045;Name=mgsA;gbkey=Gene;gene=mgsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43045;old_locus_tag=CFSAN001082_19457
NZ_APAH01000396.1	Protein Homology	CDS	5504	5962	.	-	0	ID=cds-WP_000424187.1;Parent=gene-CFSAN001082_RS43045;Dbxref=GenBank:WP_000424187.1;Name=WP_000424187.1;Ontology_term=GO:0006007,GO:0019242,GO:0008929;gbkey=CDS;gene=mgsA;go_function=methylglyoxal synthase activity|0008929||IEA;go_process=glucose catabolic process|0006007||IEA,methylglyoxal biosynthetic process|0019242||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460050.1;locus_tag=CFSAN001082_RS43045;product=methylglyoxal synthase;protein_id=WP_000424187.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	6057	6719	.	-	.	ID=gene-CFSAN001082_RS43050;Name=CFSAN001082_RS43050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43050;old_locus_tag=CFSAN001082_19462
NZ_APAH01000396.1	Protein Homology	CDS	6057	6719	.	-	0	ID=cds-WP_000847732.1;Parent=gene-CFSAN001082_RS43050;Dbxref=GenBank:WP_000847732.1;Name=WP_000847732.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460051.1;locus_tag=CFSAN001082_RS43050;product=DUF2057 family protein;protein_id=WP_000847732.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	6893	7306	.	+	.	ID=gene-CFSAN001082_RS43055;Name=CFSAN001082_RS43055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43055;old_locus_tag=CFSAN001082_19467
NZ_APAH01000396.1	Protein Homology	CDS	6893	7306	.	+	0	ID=cds-WP_023203512.1;Parent=gene-CFSAN001082_RS43055;Dbxref=GenBank:WP_023203512.1;Name=WP_023203512.1;Ontology_term=GO:0120225;gbkey=CDS;go_function=coenzyme A binding|0120225||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309076.1;locus_tag=CFSAN001082_RS43055;product=CoA-binding protein;protein_id=WP_023203512.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	7352	7669	.	-	.	ID=gene-CFSAN001082_RS43060;Name=hspQ;gbkey=Gene;gene=hspQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43060;old_locus_tag=CFSAN001082_19472
NZ_APAH01000396.1	Protein Homology	CDS	7352	7669	.	-	0	ID=cds-WP_000561983.1;Parent=gene-CFSAN001082_RS43060;Dbxref=GenBank:WP_000561983.1;Name=WP_000561983.1;gbkey=CDS;gene=hspQ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123508.1;locus_tag=CFSAN001082_RS43060;product=heat shock protein HspQ;protein_id=WP_000561983.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	7727	8938	.	-	.	ID=gene-CFSAN001082_RS43065;Name=rlmI;gbkey=Gene;gene=rlmI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43065;old_locus_tag=CFSAN001082_19477
NZ_APAH01000396.1	Protein Homology	CDS	7727	8938	.	-	0	ID=cds-WP_000140480.1;Parent=gene-CFSAN001082_RS43065;Dbxref=GenBank:WP_000140480.1;Name=WP_000140480.1;Ontology_term=GO:0003723,GO:0008649;gbkey=CDS;gene=rlmI;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460054.1;locus_tag=CFSAN001082_RS43065;product=23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI;protein_id=WP_000140480.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	9153	9701	.	+	.	ID=gene-CFSAN001082_RS43070;Name=CFSAN001082_RS43070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43070;old_locus_tag=CFSAN001082_19487
NZ_APAH01000396.1	Protein Homology	CDS	9153	9701	.	+	0	ID=cds-WP_000859416.1;Parent=gene-CFSAN001082_RS43070;Dbxref=GenBank:WP_000859416.1;Name=WP_000859416.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460055.1;locus_tag=CFSAN001082_RS43070;product=YbhB/YbcL family Raf kinase inhibitor-like protein;protein_id=WP_000859416.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	9727	10506	.	+	.	ID=gene-CFSAN001082_RS43075;Name=CFSAN001082_RS43075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43075;old_locus_tag=CFSAN001082_19492
NZ_APAH01000396.1	Protein Homology	CDS	9727	10506	.	+	0	ID=cds-WP_000548080.1;Parent=gene-CFSAN001082_RS43075;Dbxref=GenBank:WP_000548080.1;Name=WP_000548080.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460056.1;locus_tag=CFSAN001082_RS43075;product=AraC family transcriptional regulator;protein_id=WP_000548080.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	10555	10836	.	+	.	ID=gene-CFSAN001082_RS43080;Name=yccX;gbkey=Gene;gene=yccX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43080;old_locus_tag=CFSAN001082_19497
NZ_APAH01000396.1	Protein Homology	CDS	10555	10836	.	+	0	ID=cds-WP_000072884.1;Parent=gene-CFSAN001082_RS43080;Dbxref=GenBank:WP_000072884.1;Name=WP_000072884.1;Ontology_term=GO:0003998;gbkey=CDS;gene=yccX;go_function=acylphosphatase activity|0003998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460057.1;locus_tag=CFSAN001082_RS43080;product=acylphosphatase;protein_id=WP_000072884.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	10833	11162	.	-	.	ID=gene-CFSAN001082_RS43085;Name=tusE;gbkey=Gene;gene=tusE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43085;old_locus_tag=CFSAN001082_19502
NZ_APAH01000396.1	Protein Homology	CDS	10833	11162	.	-	0	ID=cds-WP_000904446.1;Parent=gene-CFSAN001082_RS43085;Dbxref=GenBank:WP_000904446.1;Name=WP_000904446.1;gbkey=CDS;gene=tusE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460058.1;locus_tag=CFSAN001082_RS43085;product=sulfurtransferase TusE;protein_id=WP_000904446.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	11249	11908	.	-	.	ID=gene-CFSAN001082_RS43090;Name=yccA;gbkey=Gene;gene=yccA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43090;old_locus_tag=CFSAN001082_19507
NZ_APAH01000396.1	Protein Homology	CDS	11249	11908	.	-	0	ID=cds-WP_000374046.1;Parent=gene-CFSAN001082_RS43090;Dbxref=GenBank:WP_000374046.1;Name=WP_000374046.1;gbkey=CDS;gene=yccA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000375124.1;locus_tag=CFSAN001082_RS43090;product=FtsH protease modulator YccA;protein_id=WP_000374046.1;transl_table=11
NZ_APAH01000396.1	RefSeq	gene	12303	12390	.	+	.	ID=gene-CFSAN001082_RS43095;Name=CFSAN001082_RS43095;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS43095;old_locus_tag=CFSAN001082_t19514
NZ_APAH01000396.1	tRNAscan-SE	tRNA	12303	12390	.	+	.	ID=rna-CFSAN001082_RS43095;Parent=gene-CFSAN001082_RS43095;anticodon=(pos:12337..12339);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS43095;product=tRNA-Ser
NZ_APAH01000396.1	tRNAscan-SE	exon	12303	12390	.	+	.	ID=exon-CFSAN001082_RS43095-1;Parent=rna-CFSAN001082_RS43095;anticodon=(pos:12337..12339);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS43095;product=tRNA-Ser
##sequence-region NZ_APAH01000397.1 1 452
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000397.1	RefSeq	region	1	452	.	+	.	ID=NZ_APAH01000397.1:1..452;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000397.1	RefSeq	pseudogene	79	452	.	+	.	ID=gene-CFSAN001082_RS43100;Name=CFSAN001082_RS43100;end_range=452,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS43100;old_locus_tag=CFSAN001082_19514;partial=true;pseudo=true
NZ_APAH01000397.1	GeneMarkS-2+	CDS	79	452	.	+	0	ID=cds-CFSAN001082_RS43100;Parent=gene-CFSAN001082_RS43100;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=452,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS43100;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000398.1 1 16041
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000398.1	RefSeq	region	1	16041	.	+	.	ID=NZ_APAH01000398.1:1..16041;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000398.1	RefSeq	gene	70	1428	.	+	.	ID=gene-CFSAN001082_RS43105;Name=chbC;gbkey=Gene;gene=chbC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43105;old_locus_tag=CFSAN001082_19519
NZ_APAH01000398.1	Protein Homology	CDS	70	1428	.	+	0	ID=cds-WP_023240348.1;Parent=gene-CFSAN001082_RS43105;Dbxref=GenBank:WP_023240348.1;Name=WP_023240348.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;gene=chbC;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460279.1;locus_tag=CFSAN001082_RS43105;product=PTS N%2CN'-diacetylchitobiose transporter subunit IIC;protein_id=WP_023240348.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	1479	1826	.	+	.	ID=gene-CFSAN001082_RS43110;Name=chbA;gbkey=Gene;gene=chbA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43110;old_locus_tag=CFSAN001082_19524
NZ_APAH01000398.1	Protein Homology	CDS	1479	1826	.	+	0	ID=cds-WP_000459883.1;Parent=gene-CFSAN001082_RS43110;Dbxref=GenBank:WP_000459883.1;Name=WP_000459883.1;gbkey=CDS;gene=chbA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460280.1;locus_tag=CFSAN001082_RS43110;product=PTS N%2CN'-diacetylchitobiose transporter subunit IIA;protein_id=WP_000459883.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	1837	2679	.	+	.	ID=gene-CFSAN001082_RS43115;Name=chbR;gbkey=Gene;gene=chbR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43115;old_locus_tag=CFSAN001082_19529
NZ_APAH01000398.1	Protein Homology	CDS	1837	2679	.	+	0	ID=cds-WP_023254770.1;Parent=gene-CFSAN001082_RS43115;Dbxref=GenBank:WP_023254770.1;Name=WP_023254770.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=chbR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460281.1;locus_tag=CFSAN001082_RS43115;product=transcriptional regulator ChbR;protein_id=WP_023254770.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	2804	4159	.	+	.	ID=gene-CFSAN001082_RS43120;Name=CFSAN001082_RS43120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43120;old_locus_tag=CFSAN001082_19534
NZ_APAH01000398.1	Protein Homology	CDS	2804	4159	.	+	0	ID=cds-WP_000078780.1;Parent=gene-CFSAN001082_RS43120;Dbxref=GenBank:WP_000078780.1;Name=WP_000078780.1;Ontology_term=GO:0005975,GO:0008706,GO:0046872;gbkey=CDS;go_function=6-phospho-beta-glucosidase activity|0008706||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460282.1;locus_tag=CFSAN001082_RS43120;product=6-phospho-beta-glucosidase;protein_id=WP_000078780.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	4172	4930	.	+	.	ID=gene-CFSAN001082_RS43125;Name=chbG;gbkey=Gene;gene=chbG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43125;old_locus_tag=CFSAN001082_19539
NZ_APAH01000398.1	Protein Homology	CDS	4172	4930	.	+	0	ID=cds-WP_000442730.1;Parent=gene-CFSAN001082_RS43125;Dbxref=GenBank:WP_000442730.1;Name=WP_000442730.1;Ontology_term=GO:0000272,GO:0016811;gbkey=CDS;gene=chbG;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amides|0016811||IEA;go_process=polysaccharide catabolic process|0000272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460283.1;locus_tag=CFSAN001082_RS43125;product=chitin disaccharide deacetylase;protein_id=WP_000442730.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	4974	7226	.	-	.	ID=gene-CFSAN001082_RS43130;Name=katE;gbkey=Gene;gene=katE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43130;old_locus_tag=CFSAN001082_19544
NZ_APAH01000398.1	Protein Homology	CDS	4974	7226	.	-	0	ID=cds-WP_000019101.1;Parent=gene-CFSAN001082_RS43130;Dbxref=GenBank:WP_000019101.1;Name=WP_000019101.1;Ontology_term=GO:0006979,GO:0004096,GO:0020037;gbkey=CDS;gene=katE;go_function=catalase activity|0004096||IEA,heme binding|0020037||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460284.1;locus_tag=CFSAN001082_RS43130;product=catalase HPII;protein_id=WP_000019101.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	7591	7833	.	+	.	ID=gene-CFSAN001082_RS43135;Name=cedA;gbkey=Gene;gene=cedA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43135;old_locus_tag=CFSAN001082_19549
NZ_APAH01000398.1	Protein Homology	CDS	7591	7833	.	+	0	ID=cds-WP_000977510.1;Parent=gene-CFSAN001082_RS43135;Dbxref=GenBank:WP_000977510.1;Name=WP_000977510.1;gbkey=CDS;gene=cedA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460285.1;locus_tag=CFSAN001082_RS43135;product=cell division activator CedA;protein_id=WP_000977510.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	7936	9327	.	-	.	ID=gene-CFSAN001082_RS43140;Name=tcyP;gbkey=Gene;gene=tcyP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43140;old_locus_tag=CFSAN001082_19554
NZ_APAH01000398.1	Protein Homology	CDS	7936	9327	.	-	0	ID=cds-WP_001010662.1;Parent=gene-CFSAN001082_RS43140;Dbxref=GenBank:WP_001010662.1;Name=WP_001010662.1;gbkey=CDS;gene=tcyP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120792.1;locus_tag=CFSAN001082_RS43140;product=cystine/sulfocysteine:cation symporter;protein_id=WP_001010662.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	9464	10063	.	-	.	ID=gene-CFSAN001082_RS43145;Name=CFSAN001082_RS43145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43145;old_locus_tag=CFSAN001082_19559
NZ_APAH01000398.1	Protein Homology	CDS	9464	10063	.	-	0	ID=cds-WP_000505804.1;Parent=gene-CFSAN001082_RS43145;Dbxref=GenBank:WP_000505804.1;Name=WP_000505804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460287.3;locus_tag=CFSAN001082_RS43145;product=metal-dependent hydrolase;protein_id=WP_000505804.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	10201	10869	.	-	.	ID=gene-CFSAN001082_RS43150;Name=hxpB;gbkey=Gene;gene=hxpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43150;old_locus_tag=CFSAN001082_19564
NZ_APAH01000398.1	Protein Homology	CDS	10201	10869	.	-	0	ID=cds-WP_000106854.1;Parent=gene-CFSAN001082_RS43150;Dbxref=GenBank:WP_000106854.1;Name=WP_000106854.1;gbkey=CDS;gene=hxpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460288.1;locus_tag=CFSAN001082_RS43150;product=hexitol phosphatase HxpB;protein_id=WP_000106854.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	11018	11554	.	+	.	ID=gene-CFSAN001082_RS43155;Name=CFSAN001082_RS43155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43155;old_locus_tag=CFSAN001082_19569
NZ_APAH01000398.1	Protein Homology	CDS	11018	11554	.	+	0	ID=cds-WP_000222158.1;Parent=gene-CFSAN001082_RS43155;Dbxref=GenBank:WP_000222158.1;Name=WP_000222158.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460289.1;locus_tag=CFSAN001082_RS43155;product=YniB family protein;protein_id=WP_000222158.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	11597	12457	.	-	.	ID=gene-CFSAN001082_RS43160;Name=CFSAN001082_RS43160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43160;old_locus_tag=CFSAN001082_19574
NZ_APAH01000398.1	Protein Homology	CDS	11597	12457	.	-	0	ID=cds-WP_000267686.1;Parent=gene-CFSAN001082_RS43160;Dbxref=GenBank:WP_000267686.1;Name=WP_000267686.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460290.1;locus_tag=CFSAN001082_RS43160;product=fructosamine kinase family protein;protein_id=WP_000267686.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	12564	12854	.	-	.	ID=gene-CFSAN001082_RS43165;Name=ghoS;gbkey=Gene;gene=ghoS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43165;old_locus_tag=CFSAN001082_19579
NZ_APAH01000398.1	Protein Homology	CDS	12564	12854	.	-	0	ID=cds-WP_000146133.1;Parent=gene-CFSAN001082_RS43165;Dbxref=GenBank:WP_000146133.1;Name=WP_000146133.1;Ontology_term=GO:0004521;gbkey=CDS;gene=ghoS;go_function=RNA endonuclease activity|0004521||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460291.1;locus_tag=CFSAN001082_RS43165;product=type V toxin-antitoxin system endoribonuclease antitoxin GhoS;protein_id=WP_000146133.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	12951	13883	.	-	.	ID=gene-CFSAN001082_RS43170;Name=pfkB;gbkey=Gene;gene=pfkB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43170;old_locus_tag=CFSAN001082_19584
NZ_APAH01000398.1	Protein Homology	CDS	12951	13883	.	-	0	ID=cds-WP_000251707.1;Parent=gene-CFSAN001082_RS43170;Dbxref=GenBank:WP_000251707.1;Name=WP_000251707.1;Ontology_term=GO:0005975,GO:0016773;gbkey=CDS;gene=pfkB;go_function=phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460292.1;locus_tag=CFSAN001082_RS43170;product=6-phosphofructokinase II;protein_id=WP_000251707.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	14172	14930	.	+	.	ID=gene-CFSAN001082_RS43175;Name=CFSAN001082_RS43175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43175;old_locus_tag=CFSAN001082_19589
NZ_APAH01000398.1	Protein Homology	CDS	14172	14930	.	+	0	ID=cds-WP_000770981.1;Parent=gene-CFSAN001082_RS43175;Dbxref=GenBank:WP_000770981.1;Name=WP_000770981.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460293.1;locus_tag=CFSAN001082_RS43175;product=DUF481 domain-containing protein;protein_id=WP_000770981.1;transl_table=11
NZ_APAH01000398.1	RefSeq	gene	14979	15938	.	-	.	ID=gene-CFSAN001082_RS43180;Name=CFSAN001082_RS43180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43180;old_locus_tag=CFSAN001082_19594
NZ_APAH01000398.1	Protein Homology	CDS	14979	15938	.	-	0	ID=cds-WP_001046434.1;Parent=gene-CFSAN001082_RS43180;Dbxref=GenBank:WP_001046434.1;Name=WP_001046434.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460294.1;locus_tag=CFSAN001082_RS43180;product=lipid A deacylase LpxR family protein;protein_id=WP_001046434.1;transl_table=11
##sequence-region NZ_APAH01000399.1 1 8633
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000399.1	RefSeq	region	1	8633	.	+	.	ID=NZ_APAH01000399.1:1..8633;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000399.1	RefSeq	gene	252	1781	.	+	.	ID=gene-CFSAN001082_RS43185;Name=pntA;gbkey=Gene;gene=pntA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43185;old_locus_tag=CFSAN001082_19599
NZ_APAH01000399.1	Protein Homology	CDS	252	1781	.	+	0	ID=cds-WP_023254771.1;Parent=gene-CFSAN001082_RS43185;Dbxref=GenBank:WP_023254771.1;Name=WP_023254771.1;Ontology_term=GO:1902600,GO:0008750;gbkey=CDS;gene=pntA;go_function=proton-translocating NAD(P)+ transhydrogenase activity|0008750||IEA;go_process=proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460439.1;locus_tag=CFSAN001082_RS43185;product=Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha;protein_id=WP_023254771.1;transl_table=11
NZ_APAH01000399.1	RefSeq	gene	1792	3180	.	+	.	ID=gene-CFSAN001082_RS43190;Name=pntB;gbkey=Gene;gene=pntB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43190;old_locus_tag=CFSAN001082_19604
NZ_APAH01000399.1	Protein Homology	CDS	1792	3180	.	+	0	ID=cds-WP_000014056.1;Parent=gene-CFSAN001082_RS43190;Dbxref=GenBank:WP_000014056.1;Name=WP_000014056.1;Ontology_term=GO:0008750,GO:0050661,GO:0016020;gbkey=CDS;gene=pntB;go_component=membrane|0016020||IEA;go_function=proton-translocating NAD(P)+ transhydrogenase activity|0008750||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000014033.1;locus_tag=CFSAN001082_RS43190;product=Re/Si-specific NAD(P)(+) transhydrogenase subunit beta;protein_id=WP_000014056.1;transl_table=11
NZ_APAH01000399.1	RefSeq	gene	3355	4389	.	-	.	ID=gene-CFSAN001082_RS43195;Name=CFSAN001082_RS43195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43195;old_locus_tag=CFSAN001082_19609
NZ_APAH01000399.1	Protein Homology	CDS	3355	4389	.	-	0	ID=cds-WP_001118268.1;Parent=gene-CFSAN001082_RS43195;Dbxref=GenBank:WP_001118268.1;Name=WP_001118268.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460441.1;locus_tag=CFSAN001082_RS43195;product=AI-2E family transporter;protein_id=WP_001118268.1;transl_table=11
NZ_APAH01000399.1	RefSeq	gene	4525	4695	.	+	.	ID=gene-CFSAN001082_RS49275;Name=CFSAN001082_RS49275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49275;old_locus_tag=CFSAN001082_19614
NZ_APAH01000399.1	Protein Homology	CDS	4525	4695	.	+	0	ID=cds-WP_001539987.1;Parent=gene-CFSAN001082_RS49275;Dbxref=GenBank:WP_001539987.1;Name=WP_001539987.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001334396.1;locus_tag=CFSAN001082_RS49275;product=hypothetical protein;protein_id=WP_001539987.1;transl_table=11
NZ_APAH01000399.1	RefSeq	gene	4807	5169	.	+	.	ID=gene-CFSAN001082_RS43200;Name=mdtJ;gbkey=Gene;gene=mdtJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43200;old_locus_tag=CFSAN001082_19619
NZ_APAH01000399.1	Protein Homology	CDS	4807	5169	.	+	0	ID=cds-WP_023254772.1;Parent=gene-CFSAN001082_RS43200;Dbxref=GenBank:WP_023254772.1;Name=WP_023254772.1;Ontology_term=GO:0015848,GO:0015606,GO:0016020;gbkey=CDS;gene=mdtJ;go_component=membrane|0016020||IEA;go_function=spermidine transmembrane transporter activity|0015606||IEA;go_process=spermidine transport|0015848||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460442.1;locus_tag=CFSAN001082_RS43200;product=multidrug/spermidine efflux SMR transporter subunit MdtJ;protein_id=WP_023254772.1;transl_table=11
NZ_APAH01000399.1	RefSeq	gene	5156	5485	.	+	.	ID=gene-CFSAN001082_RS43205;Name=mdtI;gbkey=Gene;gene=mdtI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43205;old_locus_tag=CFSAN001082_19624
NZ_APAH01000399.1	Protein Homology	CDS	5156	5485	.	+	0	ID=cds-WP_001183821.1;Parent=gene-CFSAN001082_RS43205;Dbxref=GenBank:WP_001183821.1;Name=WP_001183821.1;gbkey=CDS;gene=mdtI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460443.1;locus_tag=CFSAN001082_RS43205;product=multidrug/spermidine efflux SMR transporter subunit MdtI;protein_id=WP_001183821.1;transl_table=11
NZ_APAH01000399.1	RefSeq	gene	5520	6341	.	-	.	ID=gene-CFSAN001082_RS43210;Name=CFSAN001082_RS43210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43210;old_locus_tag=CFSAN001082_19629
NZ_APAH01000399.1	Protein Homology	CDS	5520	6341	.	-	0	ID=cds-WP_000549649.1;Parent=gene-CFSAN001082_RS43210;Dbxref=GenBank:WP_000549649.1;Name=WP_000549649.1;Ontology_term=GO:0006508,GO:0004252,GO:0008233,GO:0008236;gbkey=CDS;go_function=serine-type endopeptidase activity|0004252||IEA,peptidase activity|0008233||IEA,serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460444.1;locus_tag=CFSAN001082_RS43210;product=trypsin-like serine peptidase;protein_id=WP_000549649.1;transl_table=11
NZ_APAH01000399.1	RefSeq	gene	6610	6861	.	-	.	ID=gene-CFSAN001082_RS43215;Name=asr;gbkey=Gene;gene=asr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43215;old_locus_tag=CFSAN001082_19634
NZ_APAH01000399.1	Protein Homology	CDS	6610	6861	.	-	0	ID=cds-WP_017441038.1;Parent=gene-CFSAN001082_RS43215;Dbxref=GenBank:WP_017441038.1;Name=WP_017441038.1;gbkey=CDS;gene=asr;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001698353.1;locus_tag=CFSAN001082_RS43215;product=acid resistance repetitive basic protein Asr;protein_id=WP_017441038.1;transl_table=11
NZ_APAH01000399.1	RefSeq	gene	7097	7189	.	+	.	ID=gene-CFSAN001082_RS48990;Name=CFSAN001082_RS48990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48990;old_locus_tag=CFSAN001082_19639
NZ_APAH01000399.1	Protein Homology	CDS	7097	7189	.	+	0	ID=cds-WP_001068154.1;Parent=gene-CFSAN001082_RS48990;Dbxref=GenBank:WP_001068154.1;Name=WP_001068154.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF033695.1;locus_tag=CFSAN001082_RS48990;product=KPN_01571 family protein;protein_id=WP_001068154.1;transl_table=11
NZ_APAH01000399.1	RefSeq	gene	7256	8509	.	-	.	ID=gene-CFSAN001082_RS43220;Name=CFSAN001082_RS43220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43220;old_locus_tag=CFSAN001082_19644
NZ_APAH01000399.1	Protein Homology	CDS	7256	8509	.	-	0	ID=cds-WP_000091796.1;Parent=gene-CFSAN001082_RS43220;Dbxref=GenBank:WP_000091796.1;Name=WP_000091796.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460446.1;locus_tag=CFSAN001082_RS43220;product=MFS transporter;protein_id=WP_000091796.1;transl_table=11
##sequence-region NZ_APAH01000400.1 1 6198
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000400.1	RefSeq	region	1	6198	.	+	.	ID=NZ_APAH01000400.1:1..6198;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000400.1	RefSeq	gene	515	1444	.	-	.	ID=gene-CFSAN001082_RS43225;Name=hilD;gbkey=Gene;gene=hilD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43225;old_locus_tag=CFSAN001082_19654
NZ_APAH01000400.1	Protein Homology	CDS	515	1444	.	-	0	ID=cds-WP_000432699.1;Parent=gene-CFSAN001082_RS43225;Dbxref=GenBank:WP_000432699.1;Name=WP_000432699.1;gbkey=CDS;gene=hilD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461796.1;locus_tag=CFSAN001082_RS43225;product=transcriptional regulator HilD;protein_id=WP_000432699.1;transl_table=11
NZ_APAH01000400.1	RefSeq	gene	1760	2938	.	+	.	ID=gene-CFSAN001082_RS43230;Name=prgH;gbkey=Gene;gene=prgH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43230;old_locus_tag=CFSAN001082_19659
NZ_APAH01000400.1	Protein Homology	CDS	1760	2938	.	+	0	ID=cds-WP_000450196.1;Parent=gene-CFSAN001082_RS43230;Dbxref=GenBank:WP_000450196.1;Name=WP_000450196.1;gbkey=CDS;gene=prgH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461795.1;locus_tag=CFSAN001082_RS43230;product=type III secretion system inner membrane ring protein PrgH;protein_id=WP_000450196.1;transl_table=11
NZ_APAH01000400.1	RefSeq	gene	2963	3205	.	+	.	ID=gene-CFSAN001082_RS43235;Name=prgI;gbkey=Gene;gene=prgI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43235;old_locus_tag=CFSAN001082_19664
NZ_APAH01000400.1	Protein Homology	CDS	2963	3205	.	+	0	ID=cds-WP_000235229.1;Parent=gene-CFSAN001082_RS43235;Dbxref=GenBank:WP_000235229.1;Name=WP_000235229.1;gbkey=CDS;gene=prgI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461794.1;locus_tag=CFSAN001082_RS43235;product=type III secretion system needle filament protein PrgI;protein_id=WP_000235229.1;transl_table=11
NZ_APAH01000400.1	RefSeq	gene	3224	3529	.	+	.	ID=gene-CFSAN001082_RS43240;Name=prgJ;gbkey=Gene;gene=prgJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43240;old_locus_tag=CFSAN001082_19669
NZ_APAH01000400.1	Protein Homology	CDS	3224	3529	.	+	0	ID=cds-WP_000020431.1;Parent=gene-CFSAN001082_RS43240;Dbxref=GenBank:WP_000020431.1;Name=WP_000020431.1;gbkey=CDS;gene=prgJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461793.1;locus_tag=CFSAN001082_RS43240;product=type III secretion system inner rod protein PrgJ;protein_id=WP_000020431.1;transl_table=11
NZ_APAH01000400.1	RefSeq	gene	3526	4284	.	+	.	ID=gene-CFSAN001082_RS43245;Name=prgK;gbkey=Gene;gene=prgK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43245;old_locus_tag=CFSAN001082_19674
NZ_APAH01000400.1	Protein Homology	CDS	3526	4284	.	+	0	ID=cds-WP_000621238.1;Parent=gene-CFSAN001082_RS43245;Dbxref=GenBank:WP_000621238.1;Name=WP_000621238.1;gbkey=CDS;gene=prgK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461792.1;locus_tag=CFSAN001082_RS43245;product=type III secretion system inner membrane ring lipoprotein PrgK;protein_id=WP_000621238.1;transl_table=11
NZ_APAH01000400.1	RefSeq	gene	4256	4855	.	+	.	ID=gene-CFSAN001082_RS43250;Name=orgA;gbkey=Gene;gene=orgA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43250;old_locus_tag=CFSAN001082_19679
NZ_APAH01000400.1	Protein Homology	CDS	4256	4855	.	+	0	ID=cds-WP_077907222.1;Parent=gene-CFSAN001082_RS43250;Dbxref=GenBank:WP_077907222.1;Name=WP_077907222.1;gbkey=CDS;gene=orgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461791.1;locus_tag=CFSAN001082_RS43250;product=oxygen-regulated invasion protein OrgA;protein_id=WP_077907222.1;transl_table=11
NZ_APAH01000400.1	RefSeq	gene	4812	5483	.	+	.	ID=gene-CFSAN001082_RS43255;Name=orgB;gbkey=Gene;gene=orgB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43255;old_locus_tag=CFSAN001082_19684
NZ_APAH01000400.1	Protein Homology	CDS	4812	5483	.	+	0	ID=cds-WP_000916655.1;Parent=gene-CFSAN001082_RS43255;Dbxref=GenBank:WP_000916655.1;Name=WP_000916655.1;gbkey=CDS;gene=orgB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835247.1;locus_tag=CFSAN001082_RS43255;product=type III secretion system linker protein OrgB;protein_id=WP_000916655.1;transl_table=11
NZ_APAH01000400.1	RefSeq	gene	5499	5951	.	+	.	ID=gene-CFSAN001082_RS43260;Name=CFSAN001082_RS43260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43260;old_locus_tag=CFSAN001082_19689
NZ_APAH01000400.1	Protein Homology	CDS	5499	5951	.	+	0	ID=cds-WP_000612177.1;Parent=gene-CFSAN001082_RS43260;Dbxref=GenBank:WP_000612177.1;Name=WP_000612177.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461789.1;locus_tag=CFSAN001082_RS43260;product=type III secretion system effector protein OrgC;protein_id=WP_000612177.1;transl_table=11
##sequence-region NZ_APAH01000401.1 1 14532
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000401.1	RefSeq	region	1	14532	.	+	.	ID=NZ_APAH01000401.1:1..14532;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000401.1	RefSeq	gene	49	840	.	+	.	ID=gene-CFSAN001082_RS43265;Name=nei;gbkey=Gene;gene=nei;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43265;old_locus_tag=CFSAN001082_19694
NZ_APAH01000401.1	Protein Homology	CDS	49	840	.	+	0	ID=cds-WP_001113977.1;Parent=gene-CFSAN001082_RS43265;Dbxref=GenBank:WP_001113977.1;Name=WP_001113977.1;Ontology_term=GO:0006281,GO:0000703,GO:0003677,GO:0008270,GO:0140078;gbkey=CDS;gene=nei;go_function=oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity|0000703||IEA,DNA binding|0003677||IEA,zinc ion binding|0008270||IEA,class I DNA-(apurinic or apyrimidinic site) endonuclease activity|0140078||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459713.1;locus_tag=CFSAN001082_RS43265;product=endonuclease VIII;protein_id=WP_001113977.1;transl_table=11
NZ_APAH01000401.1	RefSeq	gene	895	1941	.	-	.	ID=gene-CFSAN001082_RS43270;Name=CFSAN001082_RS43270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43270;old_locus_tag=CFSAN001082_19699
NZ_APAH01000401.1	Protein Homology	CDS	895	1941	.	-	0	ID=cds-WP_023254774.1;Parent=gene-CFSAN001082_RS43270;Dbxref=GenBank:WP_023254774.1;Name=WP_023254774.1;Ontology_term=GO:0010468,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_process=regulation of gene expression|0010468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459714.1;locus_tag=CFSAN001082_RS43270;product=AbrB family transcriptional regulator;protein_id=WP_023254774.1;transl_table=11
NZ_APAH01000401.1	RefSeq	gene	2078	3361	.	-	.	ID=gene-CFSAN001082_RS43275;Name=CFSAN001082_RS43275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43275;old_locus_tag=CFSAN001082_19704
NZ_APAH01000401.1	Protein Homology	CDS	2078	3361	.	-	0	ID=cds-WP_000785811.1;Parent=gene-CFSAN001082_RS43275;Dbxref=GenBank:WP_000785811.1;Name=WP_000785811.1;Ontology_term=GO:0046912;gbkey=CDS;go_function=acyltransferase activity%2C acyl groups converted into alkyl on transfer|0046912||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459715.1;locus_tag=CFSAN001082_RS43275;product=citrate synthase;protein_id=WP_000785811.1;transl_table=11
NZ_APAH01000401.1	RefSeq	gene	3587	3718	.	-	.	ID=gene-CFSAN001082_RS49280;Name=CFSAN001082_RS49280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49280
NZ_APAH01000401.1	Protein Homology	CDS	3587	3718	.	-	0	ID=cds-WP_418142699.1;Parent=gene-CFSAN001082_RS49280;Dbxref=GenBank:WP_418142699.1;Name=WP_418142699.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049035.1;locus_tag=CFSAN001082_RS49280;product=hypothetical protein;protein_id=WP_418142699.1;transl_table=11
NZ_APAH01000401.1	RefSeq	gene	4101	4505	.	+	.	ID=gene-CFSAN001082_RS43280;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;gene_synonym=cybA,dhsC;locus_tag=CFSAN001082_RS43280;old_locus_tag=CFSAN001082_19709
NZ_APAH01000401.1	Protein Homology	CDS	4101	4505	.	+	0	ID=cds-WP_024150329.1;Parent=gene-CFSAN001082_RS43280;Dbxref=GenBank:WP_024150329.1;Name=WP_024150329.1;Ontology_term=GO:0006099,GO:0000104,GO:0009055,GO:0016020,GO:0045273;gbkey=CDS;gene=sdhC;go_component=membrane|0016020||IEA,respiratory chain complex II (succinate dehydrogenase)|0045273||IEA;go_function=succinate dehydrogenase activity|0000104||IEA,electron transfer activity|0009055||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000263334.1;locus_tag=CFSAN001082_RS43280;product=succinate dehydrogenase cytochrome b556 subunit;protein_id=WP_024150329.1;transl_table=11
NZ_APAH01000401.1	RefSeq	gene	4499	4846	.	+	.	ID=gene-CFSAN001082_RS43285;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;gene_synonym=cybS,dhsD;locus_tag=CFSAN001082_RS43285;old_locus_tag=CFSAN001082_19714
NZ_APAH01000401.1	Protein Homology	CDS	4499	4846	.	+	0	ID=cds-WP_000254356.1;Parent=gene-CFSAN001082_RS43285;Dbxref=GenBank:WP_000254356.1;Name=WP_000254356.1;gbkey=CDS;gene=sdhD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017455938.1;locus_tag=CFSAN001082_RS43285;product=succinate dehydrogenase membrane anchor subunit;protein_id=WP_000254356.1;transl_table=11
NZ_APAH01000401.1	RefSeq	gene	4846	6612	.	+	.	ID=gene-CFSAN001082_RS43290;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43290;old_locus_tag=CFSAN001082_19719
NZ_APAH01000401.1	Protein Homology	CDS	4846	6612	.	+	0	ID=cds-WP_023254776.1;Parent=gene-CFSAN001082_RS43290;Dbxref=GenBank:WP_023254776.1;Name=WP_023254776.1;Ontology_term=GO:0006099,GO:0016627,GO:0050660;gbkey=CDS;gene=sdhA;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122549.1;locus_tag=CFSAN001082_RS43290;product=succinate dehydrogenase flavoprotein subunit;protein_id=WP_023254776.1;transl_table=11
NZ_APAH01000401.1	RefSeq	gene	6629	7345	.	+	.	ID=gene-CFSAN001082_RS43295;Name=sdhB;gbkey=Gene;gene=sdhB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43295;old_locus_tag=CFSAN001082_19724
NZ_APAH01000401.1	Protein Homology	CDS	6629	7345	.	+	0	ID=cds-WP_001727709.1;Parent=gene-CFSAN001082_RS43295;Dbxref=GenBank:WP_001727709.1;Name=WP_001727709.1;gbkey=CDS;gene=sdhB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133276.1;locus_tag=CFSAN001082_RS43295;product=succinate dehydrogenase iron-sulfur subunit SdhB;protein_id=WP_001727709.1;transl_table=11
NZ_APAH01000401.1	RefSeq	gene	7869	10670	.	+	.	ID=gene-CFSAN001082_RS43300;Name=sucA;gbkey=Gene;gene=sucA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43300;old_locus_tag=CFSAN001082_19729
NZ_APAH01000401.1	Protein Homology	CDS	7869	10670	.	+	0	ID=cds-WP_023254777.1;Parent=gene-CFSAN001082_RS43300;Dbxref=GenBank:WP_023254777.1;Name=WP_023254777.1;Ontology_term=GO:0006099,GO:0004591,GO:0030976,GO:0045252;gbkey=CDS;gene=sucA;go_component=oxoglutarate dehydrogenase complex|0045252||IEA;go_function=oxoglutarate dehydrogenase (succinyl-transferring) activity|0004591||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459721.1;locus_tag=CFSAN001082_RS43300;product=2-oxoglutarate dehydrogenase E1 component;protein_id=WP_023254777.1;transl_table=11
NZ_APAH01000401.1	RefSeq	gene	10685	11893	.	+	.	ID=gene-CFSAN001082_RS43305;Name=odhB;gbkey=Gene;gene=odhB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43305;old_locus_tag=CFSAN001082_19734
NZ_APAH01000401.1	Protein Homology	CDS	10685	11893	.	+	0	ID=cds-WP_000099858.1;Parent=gene-CFSAN001082_RS43305;Dbxref=GenBank:WP_000099858.1;Name=WP_000099858.1;Ontology_term=GO:0006099,GO:0004149,GO:0045252;gbkey=CDS;gene=odhB;go_component=oxoglutarate dehydrogenase complex|0045252||IEA;go_function=dihydrolipoyllysine-residue succinyltransferase activity|0004149||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459722.1;locus_tag=CFSAN001082_RS43305;product=2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase;protein_id=WP_000099858.1;transl_table=11
NZ_APAH01000401.1	RefSeq	gene	12035	13201	.	+	.	ID=gene-CFSAN001082_RS43310;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43310;old_locus_tag=CFSAN001082_19739
NZ_APAH01000401.1	Protein Homology	CDS	12035	13201	.	+	0	ID=cds-WP_001048590.1;Parent=gene-CFSAN001082_RS43310;Dbxref=GenBank:WP_001048590.1;Name=WP_001048590.1;Ontology_term=GO:0006099,GO:0003824,GO:0005524,GO:0046872;gbkey=CDS;gene=sucC;go_function=catalytic activity|0003824||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133271.1;locus_tag=CFSAN001082_RS43310;product=ADP-forming succinate--CoA ligase subunit beta;protein_id=WP_001048590.1;transl_table=11
NZ_APAH01000401.1	RefSeq	gene	13201	14070	.	+	.	ID=gene-CFSAN001082_RS43315;Name=sucD;gbkey=Gene;gene=sucD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43315;old_locus_tag=CFSAN001082_19744
NZ_APAH01000401.1	Protein Homology	CDS	13201	14070	.	+	0	ID=cds-WP_000114631.1;Parent=gene-CFSAN001082_RS43315;Dbxref=GenBank:WP_000114631.1;Name=WP_000114631.1;Ontology_term=GO:0003824;gbkey=CDS;gene=sucD;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459724.1;locus_tag=CFSAN001082_RS43315;product=succinate--CoA ligase subunit alpha;protein_id=WP_000114631.1;transl_table=11
##sequence-region NZ_APAH01000402.1 1 787
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000402.1	RefSeq	region	1	787	.	+	.	ID=NZ_APAH01000402.1:1..787;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000402.1	RefSeq	gene	47	787	.	+	.	ID=gene-CFSAN001082_RS43325;Name=CFSAN001082_RS43325;end_range=787,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43325;old_locus_tag=CFSAN001082_19754;partial=true
NZ_APAH01000402.1	Protein Homology	CDS	47	787	.	+	0	ID=cds-WP_023254778.1;Parent=gene-CFSAN001082_RS43325;Dbxref=GenBank:WP_023254778.1;Name=WP_023254778.1;end_range=787,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460590.1;locus_tag=CFSAN001082_RS43325;partial=true;product=type III secretion system effector;protein_id=WP_023254778.1;transl_table=11
##sequence-region NZ_APAH01000403.1 1 12143
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000403.1	RefSeq	region	1	12143	.	+	.	ID=NZ_APAH01000403.1:1..12143;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000403.1	RefSeq	gene	362	2278	.	+	.	ID=gene-CFSAN001082_RS43330;Name=mtlA;gbkey=Gene;gene=mtlA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43330;old_locus_tag=CFSAN001082_19759
NZ_APAH01000403.1	Protein Homology	CDS	362	2278	.	+	0	ID=cds-WP_000093287.1;Parent=gene-CFSAN001082_RS43330;Dbxref=GenBank:WP_000093287.1;Name=WP_000093287.1;gbkey=CDS;gene=mtlA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462585.1;locus_tag=CFSAN001082_RS43330;product=PTS mannitol transporter subunit IICBA;protein_id=WP_000093287.1;transl_table=11
NZ_APAH01000403.1	RefSeq	gene	2509	3657	.	+	.	ID=gene-CFSAN001082_RS43335;Name=mtlD;gbkey=Gene;gene=mtlD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43335;old_locus_tag=CFSAN001082_19764
NZ_APAH01000403.1	Protein Homology	CDS	2509	3657	.	+	0	ID=cds-WP_023254779.1;Parent=gene-CFSAN001082_RS43335;Dbxref=GenBank:WP_023254779.1;Name=WP_023254779.1;Ontology_term=GO:0019594,GO:0008926;gbkey=CDS;gene=mtlD;go_function=mannitol-1-phosphate 5-dehydrogenase activity|0008926||IEA;go_process=mannitol metabolic process|0019594||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462586.1;locus_tag=CFSAN001082_RS43335;product=mannitol-1-phosphate 5-dehydrogenase;protein_id=WP_023254779.1;transl_table=11
NZ_APAH01000403.1	RefSeq	gene	3654	4244	.	+	.	ID=gene-CFSAN001082_RS43340;Name=mtlR;gbkey=Gene;gene=mtlR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43340;old_locus_tag=CFSAN001082_19769
NZ_APAH01000403.1	Protein Homology	CDS	3654	4244	.	+	0	ID=cds-WP_023254780.1;Parent=gene-CFSAN001082_RS43340;Dbxref=GenBank:WP_023254780.1;Name=WP_023254780.1;gbkey=CDS;gene=mtlR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462587.1;locus_tag=CFSAN001082_RS43340;product=mannitol operon repressor MtlR;protein_id=WP_023254780.1;transl_table=11
NZ_APAH01000403.1	RefSeq	gene	4254	4463	.	-	.	ID=gene-CFSAN001082_RS43345;Name=CFSAN001082_RS43345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43345;old_locus_tag=CFSAN001082_19774
NZ_APAH01000403.1	Protein Homology	CDS	4254	4463	.	-	0	ID=cds-WP_001062558.1;Parent=gene-CFSAN001082_RS43345;Dbxref=GenBank:WP_001062558.1;Name=WP_001062558.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462588.1;locus_tag=CFSAN001082_RS43345;product=hypothetical protein;protein_id=WP_001062558.1;transl_table=11
NZ_APAH01000403.1	RefSeq	gene	4754	5116	.	+	.	ID=gene-CFSAN001082_RS43350;Name=CFSAN001082_RS43350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43350;old_locus_tag=CFSAN001082_19779
NZ_APAH01000403.1	Protein Homology	CDS	4754	5116	.	+	0	ID=cds-WP_000665688.1;Parent=gene-CFSAN001082_RS43350;Dbxref=GenBank:WP_000665688.1;Name=WP_000665688.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462589.1;locus_tag=CFSAN001082_RS43350;product=YibL family ribosome-associated protein;protein_id=WP_000665688.1;transl_table=11
NZ_APAH01000403.1	RefSeq	gene	5390	7045	.	+	.	ID=gene-CFSAN001082_RS43355;Name=lldP;gbkey=Gene;gene=lldP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43355;old_locus_tag=CFSAN001082_19784
NZ_APAH01000403.1	Protein Homology	CDS	5390	7045	.	+	0	ID=cds-WP_023254781.1;Parent=gene-CFSAN001082_RS43355;Dbxref=GenBank:WP_023254781.1;Name=WP_023254781.1;Ontology_term=GO:0015727,GO:0015129,GO:0005886;gbkey=CDS;gene=lldP;go_component=plasma membrane|0005886||IEA;go_function=lactate transmembrane transporter activity|0015129||IEA;go_process=lactate transport|0015727||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462592.1;locus_tag=CFSAN001082_RS43355;product=L-lactate permease;protein_id=WP_023254781.1;transl_table=11
NZ_APAH01000403.1	RefSeq	gene	7042	7818	.	+	.	ID=gene-CFSAN001082_RS43360;Name=lldR;gbkey=Gene;gene=lldR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43360;old_locus_tag=CFSAN001082_19789
NZ_APAH01000403.1	Protein Homology	CDS	7042	7818	.	+	0	ID=cds-WP_017442140.1;Parent=gene-CFSAN001082_RS43360;Dbxref=GenBank:WP_017442140.1;Name=WP_017442140.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=lldR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462593.1;locus_tag=CFSAN001082_RS43360;product=transcriptional regulator LldR;protein_id=WP_017442140.1;transl_table=11
NZ_APAH01000403.1	RefSeq	gene	7815	9005	.	+	.	ID=gene-CFSAN001082_RS43365;Name=lldD;gbkey=Gene;gene=lldD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43365;old_locus_tag=CFSAN001082_19794
NZ_APAH01000403.1	Protein Homology	CDS	7815	9005	.	+	0	ID=cds-WP_000586988.1;Parent=gene-CFSAN001082_RS43365;Dbxref=GenBank:WP_000586988.1;Name=WP_000586988.1;gbkey=CDS;gene=lldD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462594.1;locus_tag=CFSAN001082_RS43365;product=quinone-dependent L-lactate dehydrogenase;protein_id=WP_000586988.1;transl_table=11
NZ_APAH01000403.1	RefSeq	gene	9070	9543	.	+	.	ID=gene-CFSAN001082_RS43370;Name=trmL;gbkey=Gene;gene=trmL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43370;old_locus_tag=CFSAN001082_19799
NZ_APAH01000403.1	Protein Homology	CDS	9070	9543	.	+	0	ID=cds-WP_023254782.1;Parent=gene-CFSAN001082_RS43370;Dbxref=GenBank:WP_023254782.1;Name=WP_023254782.1;Ontology_term=GO:0001510,GO:0008173;gbkey=CDS;gene=trmL;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA methylation|0001510||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000932331.1;locus_tag=CFSAN001082_RS43370;product=tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL;protein_id=WP_023254782.1;transl_table=11
NZ_APAH01000403.1	RefSeq	gene	9611	10615	.	-	.	ID=gene-CFSAN001082_RS43375;Name=CFSAN001082_RS43375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43375;old_locus_tag=CFSAN001082_19804
NZ_APAH01000403.1	Protein Homology	CDS	9611	10615	.	-	0	ID=cds-WP_001805166.1;Parent=gene-CFSAN001082_RS43375;Dbxref=GenBank:WP_001805166.1;Name=WP_001805166.1;Ontology_term=GO:0006351,GO:0006355,GO:0045892,GO:0000976,GO:0003677,GO:0003700,GO:0043565;gbkey=CDS;go_function=transcription cis-regulatory region binding|0000976||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=DNA-templated transcription|0006351||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462596.1;locus_tag=CFSAN001082_RS43375;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_001805166.1;transl_table=11
NZ_APAH01000403.1	RefSeq	gene	10934	12130	.	+	.	ID=gene-CFSAN001082_RS43380;Name=CFSAN001082_RS43380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43380;old_locus_tag=CFSAN001082_19809
NZ_APAH01000403.1	Protein Homology	CDS	10934	12130	.	+	0	ID=cds-WP_001218249.1;Parent=gene-CFSAN001082_RS43380;Dbxref=GenBank:WP_001218249.1;Name=WP_001218249.1;Ontology_term=GO:0046392,GO:1903663,GO:0008867,GO:1990594;gbkey=CDS;go_function=galactarate dehydratase activity|0008867||IEA,L-altrarate dehydratase activity|1990594||IEA;go_process=galactarate catabolic process|0046392||IEA,L-altrarate catabolic process|1903663||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462597.1;locus_tag=CFSAN001082_RS43380;product=L-talarate/galactarate dehydratase;protein_id=WP_001218249.1;transl_table=11
##sequence-region NZ_APAH01000404.1 1 1474
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000404.1	RefSeq	region	1	1474	.	+	.	ID=NZ_APAH01000404.1:1..1474;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000404.1	RefSeq	gene	1	1474	.	-	.	ID=gene-CFSAN001082_RS43385;Name=CFSAN001082_RS43385;end_range=1474,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43385;old_locus_tag=CFSAN001082_19814;partial=true;start_range=.,1
NZ_APAH01000404.1	Protein Homology	CDS	1	1474	.	-	0	ID=cds-WP_023254783.1;Parent=gene-CFSAN001082_RS43385;Dbxref=GenBank:WP_023254783.1;Name=WP_023254783.1;end_range=1474,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835222.1;locus_tag=CFSAN001082_RS43385;partial=true;product=DUF4765 family protein;protein_id=WP_023254783.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000405.1 1 15189
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000405.1	RefSeq	region	1	15189	.	+	.	ID=NZ_APAH01000405.1:1..15189;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000405.1	RefSeq	gene	131	454	.	-	.	ID=gene-CFSAN001082_RS43390;Name=CFSAN001082_RS43390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43390;old_locus_tag=CFSAN001082_19819
NZ_APAH01000405.1	Protein Homology	CDS	131	454	.	-	0	ID=cds-WP_001573898.1;Parent=gene-CFSAN001082_RS43390;Dbxref=GenBank:WP_001573898.1;Name=WP_001573898.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459322.1;locus_tag=CFSAN001082_RS43390;product=DUF1889 family protein;protein_id=WP_001573898.1;transl_table=11
NZ_APAH01000405.1	RefSeq	pseudogene	564	639	.	-	.	ID=gene-CFSAN001082_RS49285;Name=CFSAN001082_RS49285;end_range=639,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49285;partial=true;pseudo=true
NZ_APAH01000405.1	Protein Homology	CDS	564	639	.	-	1	ID=cds-CFSAN001082_RS49285;Parent=gene-CFSAN001082_RS49285;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=639,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF020417.6;locus_tag=CFSAN001082_RS49285;partial=true;product=diol dehydratase reactivase ATPase-like domain-containing protein;pseudo=true;transl_table=11
NZ_APAH01000405.1	RefSeq	pseudogene	640	1005	.	-	.	ID=gene-CFSAN001082_RS43395;Name=CFSAN001082_RS43395;end_range=1005,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS43395;old_locus_tag=CFSAN001082_19824;partial=true;pseudo=true;start_range=.,640
NZ_APAH01000405.1	Protein Homology	CDS	640	1005	.	-	0	ID=cds-CFSAN001082_RS43395;Parent=gene-CFSAN001082_RS43395;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1005,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005228916.1;locus_tag=CFSAN001082_RS43395;partial=true;product=diol dehydratase reactivase ATPase-like domain-containing protein;pseudo=true;start_range=.,640;transl_table=11
NZ_APAH01000405.1	RefSeq	pseudogene	1115	1783	.	+	.	ID=gene-CFSAN001082_RS43400;Name=CFSAN001082_RS43400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS43400;old_locus_tag=CFSAN001082_19829;partial=true;pseudo=true;start_range=.,1115
NZ_APAH01000405.1	Protein Homology	CDS	1115	1783	.	+	0	ID=cds-CFSAN001082_RS43400;Parent=gene-CFSAN001082_RS43400;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612087.1;locus_tag=CFSAN001082_RS43400;partial=true;product=IS3-like element ISSty2 family transposase;pseudo=true;start_range=.,1115;transl_table=11
NZ_APAH01000405.1	RefSeq	pseudogene	1801	2055	.	-	.	ID=gene-CFSAN001082_RS47515;Name=CFSAN001082_RS47515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47515;old_locus_tag=CFSAN001082_19834;partial=true;pseudo=true;start_range=.,1801
NZ_APAH01000405.1	Protein Homology	CDS	1801	2055	.	-	0	ID=cds-CFSAN001082_RS47515;Parent=gene-CFSAN001082_RS47515;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225313.1;locus_tag=CFSAN001082_RS47515;partial=true;product=Arm DNA-binding domain-containing protein;pseudo=true;start_range=.,1801;transl_table=11
NZ_APAH01000405.1	RefSeq	gene	2219	2294	.	-	.	ID=gene-CFSAN001082_RS43405;Name=CFSAN001082_RS43405;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS43405;old_locus_tag=CFSAN001082_t19901
NZ_APAH01000405.1	tRNAscan-SE	tRNA	2219	2294	.	-	.	ID=rna-CFSAN001082_RS43405;Parent=gene-CFSAN001082_RS43405;anticodon=(pos:complement(2259..2261));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS43405;product=tRNA-Thr
NZ_APAH01000405.1	tRNAscan-SE	exon	2219	2294	.	-	.	ID=exon-CFSAN001082_RS43405-1;Parent=rna-CFSAN001082_RS43405;anticodon=(pos:complement(2259..2261));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS43405;product=tRNA-Thr
NZ_APAH01000405.1	RefSeq	gene	2410	3660	.	-	.	ID=gene-CFSAN001082_RS43410;Name=proA;gbkey=Gene;gene=proA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43410;old_locus_tag=CFSAN001082_19839
NZ_APAH01000405.1	Protein Homology	CDS	2410	3660	.	-	0	ID=cds-WP_023254785.1;Parent=gene-CFSAN001082_RS43410;Dbxref=GenBank:WP_023254785.1;Name=WP_023254785.1;Ontology_term=GO:0006561,GO:0004350;gbkey=CDS;gene=proA;go_function=glutamate-5-semialdehyde dehydrogenase activity|0004350||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459319.1;locus_tag=CFSAN001082_RS43410;product=glutamate-5-semialdehyde dehydrogenase;protein_id=WP_023254785.1;transl_table=11
NZ_APAH01000405.1	RefSeq	gene	3672	4775	.	-	.	ID=gene-CFSAN001082_RS43415;Name=proB;gbkey=Gene;gene=proB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43415;old_locus_tag=CFSAN001082_19844
NZ_APAH01000405.1	Protein Homology	CDS	3672	4775	.	-	0	ID=cds-WP_001285275.1;Parent=gene-CFSAN001082_RS43415;Dbxref=GenBank:WP_001285275.1;Name=WP_001285275.1;Ontology_term=GO:0006561,GO:0004349,GO:0005737;gbkey=CDS;gene=proB;go_component=cytoplasm|0005737||IEA;go_function=glutamate 5-kinase activity|0004349||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459318.1;locus_tag=CFSAN001082_RS43415;product=glutamate 5-kinase;protein_id=WP_001285275.1;transl_table=11
NZ_APAH01000405.1	RefSeq	gene	5058	6110	.	+	.	ID=gene-CFSAN001082_RS43420;Name=phoE;gbkey=Gene;gene=phoE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43420;old_locus_tag=CFSAN001082_19849
NZ_APAH01000405.1	Protein Homology	CDS	5058	6110	.	+	0	ID=cds-WP_001043672.1;Parent=gene-CFSAN001082_RS43420;Dbxref=GenBank:WP_001043672.1;Name=WP_001043672.1;Ontology_term=GO:0034220,GO:0015288,GO:0016020;gbkey=CDS;gene=phoE;go_component=membrane|0016020||IEA;go_function=porin activity|0015288||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459317.1;locus_tag=CFSAN001082_RS43420;product=phosphoporin PhoE;protein_id=WP_001043672.1;transl_table=11
NZ_APAH01000405.1	RefSeq	gene	6161	6562	.	-	.	ID=gene-CFSAN001082_RS43425;Name=crl;gbkey=Gene;gene=crl;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43425;old_locus_tag=CFSAN001082_19854
NZ_APAH01000405.1	Protein Homology	CDS	6161	6562	.	-	0	ID=cds-WP_023254786.1;Parent=gene-CFSAN001082_RS43425;Dbxref=GenBank:WP_023254786.1;Name=WP_023254786.1;Ontology_term=GO:0045893;gbkey=CDS;gene=crl;go_process=positive regulation of DNA-templated transcription|0045893||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459316.1;locus_tag=CFSAN001082_RS43425;product=sigma factor-binding protein Crl;protein_id=WP_023254786.1;transl_table=11
NZ_APAH01000405.1	RefSeq	gene	6620	7864	.	-	.	ID=gene-CFSAN001082_RS43430;Name=frsA;gbkey=Gene;gene=frsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43430;old_locus_tag=CFSAN001082_19859
NZ_APAH01000405.1	Protein Homology	CDS	6620	7864	.	-	0	ID=cds-WP_000189586.1;Parent=gene-CFSAN001082_RS43430;Dbxref=GenBank:WP_000189586.1;Name=WP_000189586.1;Ontology_term=GO:0016788;gbkey=CDS;gene=frsA;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459315.1;locus_tag=CFSAN001082_RS43430;product=esterase FrsA;protein_id=WP_000189586.1;transl_table=11
NZ_APAH01000405.1	RefSeq	gene	7953	8411	.	-	.	ID=gene-CFSAN001082_RS43435;Name=gpt;gbkey=Gene;gene=gpt;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43435;old_locus_tag=CFSAN001082_19864
NZ_APAH01000405.1	Protein Homology	CDS	7953	8411	.	-	0	ID=cds-WP_001292018.1;Parent=gene-CFSAN001082_RS43435;Dbxref=GenBank:WP_001292018.1;Name=WP_001292018.1;Ontology_term=GO:0009116,GO:0000310;gbkey=CDS;gene=gpt;go_function=xanthine phosphoribosyltransferase activity|0000310||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459314.1;locus_tag=CFSAN001082_RS43435;product=xanthine phosphoribosyltransferase;protein_id=WP_001292018.1;transl_table=11
NZ_APAH01000405.1	RefSeq	gene	8660	10117	.	+	.	ID=gene-CFSAN001082_RS43440;Name=pepD;gbkey=Gene;gene=pepD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43440;old_locus_tag=CFSAN001082_19869
NZ_APAH01000405.1	Protein Homology	CDS	8660	10117	.	+	0	ID=cds-WP_001292977.1;Parent=gene-CFSAN001082_RS43440;Dbxref=GenBank:WP_001292977.1;Name=WP_001292977.1;Ontology_term=GO:0006508,GO:0016787;gbkey=CDS;gene=pepD;go_function=hydrolase activity|0016787||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459313.1;locus_tag=CFSAN001082_RS43440;product=cytosol nonspecific dipeptidase;protein_id=WP_001292977.1;transl_table=11
NZ_APAH01000405.1	RefSeq	gene	10273	10887	.	-	.	ID=gene-CFSAN001082_RS43445;Name=prfH;gbkey=Gene;gene=prfH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43445;old_locus_tag=CFSAN001082_19874
NZ_APAH01000405.1	Protein Homology	CDS	10273	10887	.	-	0	ID=cds-WP_023254787.1;Parent=gene-CFSAN001082_RS43445;Dbxref=GenBank:WP_023254787.1;Name=WP_023254787.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=prfH;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459312.1;locus_tag=CFSAN001082_RS43445;product=peptide chain release factor H;protein_id=WP_023254787.1;transl_table=11
NZ_APAH01000405.1	RefSeq	gene	10884	12023	.	-	.	ID=gene-CFSAN001082_RS43450;Name=CFSAN001082_RS43450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43450;old_locus_tag=CFSAN001082_19879
NZ_APAH01000405.1	Protein Homology	CDS	10884	12023	.	-	0	ID=cds-WP_023223991.1;Parent=gene-CFSAN001082_RS43450;Dbxref=GenBank:WP_023223991.1;Name=WP_023223991.1;Ontology_term=GO:0006415;gbkey=CDS;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006895405.1;locus_tag=CFSAN001082_RS43450;product=RNA ligase RtcB family protein;protein_id=WP_023223991.1;transl_table=11
NZ_APAH01000405.1	RefSeq	gene	12242	13297	.	-	.	ID=gene-CFSAN001082_RS43455;Name=dinB;gbkey=Gene;gene=dinB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43455;old_locus_tag=CFSAN001082_19884
NZ_APAH01000405.1	Protein Homology	CDS	12242	13297	.	-	0	ID=cds-WP_001226199.1;Parent=gene-CFSAN001082_RS43455;Dbxref=GenBank:WP_001226199.1;Name=WP_001226199.1;Ontology_term=GO:0006281,GO:0003684,GO:0003887;gbkey=CDS;gene=dinB;go_function=damaged DNA binding|0003684||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459311.1;locus_tag=CFSAN001082_RS43455;product=DNA polymerase IV;protein_id=WP_001226199.1;transl_table=11
NZ_APAH01000405.1	RefSeq	gene	13547	14287	.	+	.	ID=gene-CFSAN001082_RS43460;Name=dpaA;gbkey=Gene;gene=dpaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43460;old_locus_tag=CFSAN001082_19889
NZ_APAH01000405.1	Protein Homology	CDS	13547	14287	.	+	0	ID=cds-WP_001225658.1;Parent=gene-CFSAN001082_RS43460;Dbxref=GenBank:WP_001225658.1;Name=WP_001225658.1;gbkey=CDS;gene=dpaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459310.1;locus_tag=CFSAN001082_RS43460;product=peptidoglycan meso-diaminopimelic acid protein amidase;protein_id=WP_001225658.1;transl_table=11
NZ_APAH01000405.1	RefSeq	gene	14258	15025	.	-	.	ID=gene-CFSAN001082_RS43465;Name=CFSAN001082_RS43465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43465;old_locus_tag=CFSAN001082_19894
NZ_APAH01000405.1	Protein Homology	CDS	14258	15025	.	-	0	ID=cds-WP_000333387.1;Parent=gene-CFSAN001082_RS43465;Dbxref=GenBank:WP_000333387.1;Name=WP_000333387.1;Ontology_term=GO:0006541,GO:0016740;gbkey=CDS;go_function=transferase activity|0016740||IEA;go_process=glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459309.1;locus_tag=CFSAN001082_RS43465;product=class II glutamine amidotransferase;protein_id=WP_000333387.1;transl_table=11
##sequence-region NZ_APAH01000406.1 1 16328
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000406.1	RefSeq	region	1	16328	.	+	.	ID=NZ_APAH01000406.1:1..16328;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000406.1	RefSeq	gene	68	2266	.	+	.	ID=gene-CFSAN001082_RS43470;Name=speF;gbkey=Gene;gene=speF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43470;old_locus_tag=CFSAN001082_19901
NZ_APAH01000406.1	Protein Homology	CDS	68	2266	.	+	0	ID=cds-WP_001292402.1;Parent=gene-CFSAN001082_RS43470;Dbxref=GenBank:WP_001292402.1;Name=WP_001292402.1;Ontology_term=GO:0006520,GO:0004586;gbkey=CDS;gene=speF;go_function=ornithine decarboxylase activity|0004586||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459686.1;locus_tag=CFSAN001082_RS43470;product=ornithine decarboxylase SpeF;protein_id=WP_001292402.1;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	2263	3582	.	+	.	ID=gene-CFSAN001082_RS43475;Name=potE;gbkey=Gene;gene=potE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43475;old_locus_tag=CFSAN001082_19906
NZ_APAH01000406.1	Protein Homology	CDS	2263	3582	.	+	0	ID=cds-WP_000042658.1;Parent=gene-CFSAN001082_RS43475;Dbxref=GenBank:WP_000042658.1;Name=WP_000042658.1;Ontology_term=GO:0015822,GO:0015847,GO:0055085,GO:0015496,GO:0016020;gbkey=CDS;gene=potE;go_component=membrane|0016020||IEA;go_function=putrescine:ornithine antiporter activity|0015496||IEA;go_process=ornithine transport|0015822||IEA,putrescine transport|0015847||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459685.1;locus_tag=CFSAN001082_RS43475;product=putrescine-ornithine antiporter;protein_id=WP_000042658.1;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	3647	4132	.	+	.	ID=gene-CFSAN001082_RS43480;Name=CFSAN001082_RS43480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43480;old_locus_tag=CFSAN001082_19911
NZ_APAH01000406.1	Protein Homology	CDS	3647	4132	.	+	0	ID=cds-WP_000070056.1;Parent=gene-CFSAN001082_RS43480;Dbxref=GenBank:WP_000070056.1;Name=WP_000070056.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459684.1;locus_tag=CFSAN001082_RS43480;product=pyridoxamine 5'-phosphate oxidase family protein;protein_id=WP_000070056.1;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	4247	5887	.	-	.	ID=gene-CFSAN001082_RS43485;Name=pgm;gbkey=Gene;gene=pgm;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43485;old_locus_tag=CFSAN001082_19916
NZ_APAH01000406.1	Protein Homology	CDS	4247	5887	.	-	0	ID=cds-WP_000974387.1;Parent=gene-CFSAN001082_RS43485;Dbxref=GenBank:WP_000974387.1;Name=WP_000974387.1;Ontology_term=GO:0005975,GO:0004614;gbkey=CDS;gene=pgm;go_function=phosphoglucomutase activity|0004614||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459683.1;locus_tag=CFSAN001082_RS43485;product=phosphoglucomutase (alpha-D-glucose-1%2C6-bisphosphate-dependent);protein_id=WP_000974387.1;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	5912	6454	.	-	.	ID=gene-CFSAN001082_RS48400;Name=seqA;gbkey=Gene;gene=seqA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48400;old_locus_tag=CFSAN001082_19921
NZ_APAH01000406.1	Protein Homology	CDS	5912	6454	.	-	0	ID=cds-WP_000848395.1;Parent=gene-CFSAN001082_RS48400;Dbxref=GenBank:WP_000848395.1;Name=WP_000848395.1;Ontology_term=GO:0032297,GO:0003677;gbkey=CDS;gene=seqA;go_function=DNA binding|0003677||IEA;go_process=negative regulation of DNA-templated DNA replication initiation|0032297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459682.1;locus_tag=CFSAN001082_RS48400;product=replication initiation negative regulator SeqA;protein_id=WP_000848395.1;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	6639	7409	.	+	.	ID=gene-CFSAN001082_RS43495;Name=ybfF;gbkey=Gene;gene=ybfF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43495;old_locus_tag=CFSAN001082_19926
NZ_APAH01000406.1	Protein Homology	CDS	6639	7409	.	+	0	ID=cds-WP_000773245.1;Parent=gene-CFSAN001082_RS43495;Dbxref=GenBank:WP_000773245.1;Name=WP_000773245.1;gbkey=CDS;gene=ybfF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459681.1;locus_tag=CFSAN001082_RS43495;product=esterase;protein_id=WP_000773245.1;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	7543	7836	.	+	.	ID=gene-CFSAN001082_RS43500;Name=ybfE;gbkey=Gene;gene=ybfE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43500;old_locus_tag=CFSAN001082_19931
NZ_APAH01000406.1	Protein Homology	CDS	7543	7836	.	+	0	ID=cds-WP_001040939.1;Parent=gene-CFSAN001082_RS43500;Dbxref=GenBank:WP_001040939.1;Name=WP_001040939.1;gbkey=CDS;gene=ybfE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459680.1;locus_tag=CFSAN001082_RS43500;product=LexA regulated protein;protein_id=WP_001040939.1;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	7987	8517	.	+	.	ID=gene-CFSAN001082_RS43505;Name=fldA;gbkey=Gene;gene=fldA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43505;old_locus_tag=CFSAN001082_19936
NZ_APAH01000406.1	Protein Homology	CDS	7987	8517	.	+	0	ID=cds-WP_001018621.1;Parent=gene-CFSAN001082_RS43505;Dbxref=GenBank:WP_001018621.1;Name=WP_001018621.1;gbkey=CDS;gene=fldA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459679.1;locus_tag=CFSAN001082_RS43505;product=flavodoxin FldA;protein_id=WP_001018621.1;transl_table=11
NZ_APAH01000406.1	RefSeq	pseudogene	8721	8806	.	+	.	ID=gene-CFSAN001082_RS48635;Name=CFSAN001082_RS48635;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48635;pseudo=true
NZ_APAH01000406.1	Protein Homology	CDS	8721	8806	.	+	0	ID=cds-CFSAN001082_RS48635;Parent=gene-CFSAN001082_RS48635;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001491546.1;locus_tag=CFSAN001082_RS48635;product=ryhB-regulated fur leader peptide;pseudo=true;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	8799	9251	.	+	.	ID=gene-CFSAN001082_RS43510;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43510;old_locus_tag=CFSAN001082_19941
NZ_APAH01000406.1	Protein Homology	CDS	8799	9251	.	+	0	ID=cds-WP_000131699.1;Parent=gene-CFSAN001082_RS43510;Dbxref=GenBank:WP_000131699.1;Name=WP_000131699.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=fur;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459678.1;locus_tag=CFSAN001082_RS43510;product=ferric iron uptake transcriptional regulator;protein_id=WP_000131699.1;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	9366	10292	.	+	.	ID=gene-CFSAN001082_RS43515;Name=tcuR;gbkey=Gene;gene=tcuR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43515;old_locus_tag=CFSAN001082_19946
NZ_APAH01000406.1	Protein Homology	CDS	9366	10292	.	+	0	ID=cds-WP_000423371.1;Parent=gene-CFSAN001082_RS43515;Dbxref=GenBank:WP_000423371.1;Name=WP_000423371.1;gbkey=CDS;gene=tcuR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459677.1;locus_tag=CFSAN001082_RS43515;product=tricarballylate utilization LysR family transcriptional regulator TcuR;protein_id=WP_000423371.1;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	10390	11793	.	+	.	ID=gene-CFSAN001082_RS43520;Name=tcuA;gbkey=Gene;gene=tcuA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43520;old_locus_tag=CFSAN001082_19951
NZ_APAH01000406.1	Protein Homology	CDS	10390	11793	.	+	0	ID=cds-WP_000228699.1;Parent=gene-CFSAN001082_RS43520;Dbxref=GenBank:WP_000228699.1;Name=WP_000228699.1;gbkey=CDS;gene=tcuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459676.1;locus_tag=CFSAN001082_RS43520;product=FAD-dependent tricarballylate dehydrogenase TcuA;protein_id=WP_000228699.1;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	11780	12919	.	+	.	ID=gene-CFSAN001082_RS43525;Name=tcuB;gbkey=Gene;gene=tcuB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43525;old_locus_tag=CFSAN001082_19956
NZ_APAH01000406.1	Protein Homology	CDS	11780	12919	.	+	0	ID=cds-WP_000811134.1;Parent=gene-CFSAN001082_RS43525;Dbxref=GenBank:WP_000811134.1;Name=WP_000811134.1;gbkey=CDS;gene=tcuB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459675.1;locus_tag=CFSAN001082_RS43525;product=tricarballylate utilization protein TcuB;protein_id=WP_000811134.1;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	12970	14274	.	+	.	ID=gene-CFSAN001082_RS43530;Name=tcuC;gbkey=Gene;gene=tcuC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43530;old_locus_tag=CFSAN001082_19961
NZ_APAH01000406.1	Protein Homology	CDS	12970	14274	.	+	0	ID=cds-WP_000057014.1;Parent=gene-CFSAN001082_RS43530;Dbxref=GenBank:WP_000057014.1;Name=WP_000057014.1;gbkey=CDS;gene=tcuC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459674.1;locus_tag=CFSAN001082_RS43530;product=tricarballylate/proton symporter TcuC;protein_id=WP_000057014.1;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	14323	14655	.	-	.	ID=gene-CFSAN001082_RS43535;Name=chiQ;gbkey=Gene;gene=chiQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43535;old_locus_tag=CFSAN001082_19966
NZ_APAH01000406.1	Protein Homology	CDS	14323	14655	.	-	0	ID=cds-WP_000722260.1;Parent=gene-CFSAN001082_RS43535;Dbxref=GenBank:WP_000722260.1;Name=WP_000722260.1;gbkey=CDS;gene=chiQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459673.1;locus_tag=CFSAN001082_RS43535;product=ChiQ/YbfN family lipoprotein;protein_id=WP_000722260.1;transl_table=11
NZ_APAH01000406.1	RefSeq	gene	14705	16111	.	-	.	ID=gene-CFSAN001082_RS43540;Name=chiP;gbkey=Gene;gene=chiP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43540;old_locus_tag=CFSAN001082_19971
NZ_APAH01000406.1	Protein Homology	CDS	14705	16111	.	-	0	ID=cds-WP_001258803.1;Parent=gene-CFSAN001082_RS43540;Dbxref=GenBank:WP_001258803.1;Name=WP_001258803.1;Ontology_term=GO:0015774,GO:0052778,GO:0015288;gbkey=CDS;gene=chiP;go_function=porin activity|0015288||IEA;go_process=polysaccharide transport|0015774||IEA,diacetylchitobiose metabolic process|0052778||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459672.1;locus_tag=CFSAN001082_RS43540;product=chitoporin ChiP;protein_id=WP_001258803.1;transl_table=11
##sequence-region NZ_APAH01000407.1 1 11267
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000407.1	RefSeq	region	1	11267	.	+	.	ID=NZ_APAH01000407.1:1..11267;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000407.1	RefSeq	gene	77	1450	.	+	.	ID=gene-CFSAN001082_RS43545;Name=CFSAN001082_RS43545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43545;old_locus_tag=CFSAN001082_19976
NZ_APAH01000407.1	Protein Homology	CDS	77	1450	.	+	0	ID=cds-WP_000099989.1;Parent=gene-CFSAN001082_RS43545;Dbxref=GenBank:WP_000099989.1;Name=WP_000099989.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459047.1;locus_tag=CFSAN001082_RS43545;product=MFS transporter;protein_id=WP_000099989.1;transl_table=11
NZ_APAH01000407.1	RefSeq	gene	1490	3529	.	+	.	ID=gene-CFSAN001082_RS43550;Name=CFSAN001082_RS43550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43550;old_locus_tag=CFSAN001082_19981
NZ_APAH01000407.1	Protein Homology	CDS	1490	3529	.	+	0	ID=cds-WP_001116451.1;Parent=gene-CFSAN001082_RS43550;Dbxref=GenBank:WP_001116451.1;Name=WP_001116451.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459046.1;locus_tag=CFSAN001082_RS43550;product=glycoside hydrolase family 31 protein;protein_id=WP_001116451.1;transl_table=11
NZ_APAH01000407.1	RefSeq	gene	3584	4483	.	-	.	ID=gene-CFSAN001082_RS43555;Name=nhaR;gbkey=Gene;gene=nhaR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43555;old_locus_tag=CFSAN001082_19986
NZ_APAH01000407.1	Protein Homology	CDS	3584	4483	.	-	0	ID=cds-WP_000062872.1;Parent=gene-CFSAN001082_RS43555;Dbxref=GenBank:WP_000062872.1;Name=WP_000062872.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=nhaR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459045.1;locus_tag=CFSAN001082_RS43555;product=transcriptional activator NhaR;protein_id=WP_000062872.1;transl_table=11
NZ_APAH01000407.1	RefSeq	gene	4545	5711	.	-	.	ID=gene-CFSAN001082_RS43560;Name=nhaA;gbkey=Gene;gene=nhaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43560;old_locus_tag=CFSAN001082_19991
NZ_APAH01000407.1	Protein Homology	CDS	4545	5711	.	-	0	ID=cds-WP_000681340.1;Parent=gene-CFSAN001082_RS43560;Dbxref=GenBank:WP_000681340.1;Name=WP_000681340.1;Ontology_term=GO:0006814,GO:0006885,GO:0015385,GO:0016020;gbkey=CDS;gene=nhaA;go_component=membrane|0016020||IEA;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,regulation of pH|0006885||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459044.1;locus_tag=CFSAN001082_RS43560;product=Na+/H+ antiporter NhaA;protein_id=WP_000681340.1;transl_table=11
NZ_APAH01000407.1	RefSeq	pseudogene	5874	6101	.	-	.	ID=gene-CFSAN001082_RS48025;Name=CFSAN001082_RS48025;end_range=6101,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48025;old_locus_tag=CFSAN001082_19996;partial=true;pseudo=true
NZ_APAH01000407.1	Protein Homology	CDS	5874	6101	.	-	0	ID=cds-CFSAN001082_RS48025;Parent=gene-CFSAN001082_RS48025;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=6101,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459043.1;locus_tag=CFSAN001082_RS48025;partial=true;product=aryl-sulfate sulfotransferase;pseudo=true;transl_table=11
NZ_APAH01000407.1	RefSeq	gene	6023	6280	.	-	.	ID=gene-CFSAN001082_RS43565;Name=CFSAN001082_RS43565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43565;old_locus_tag=CFSAN001082_20001
NZ_APAH01000407.1	Protein Homology	CDS	6023	6280	.	-	0	ID=cds-WP_000528983.1;Parent=gene-CFSAN001082_RS43565;Dbxref=GenBank:WP_000528983.1;Name=WP_000528983.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000528979.1;locus_tag=CFSAN001082_RS43565;product=hypothetical protein;protein_id=WP_000528983.1;transl_table=11
NZ_APAH01000407.1	RefSeq	gene	6399	7652	.	-	.	ID=gene-CFSAN001082_RS43570;Name=CFSAN001082_RS43570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43570;old_locus_tag=CFSAN001082_20006
NZ_APAH01000407.1	Protein Homology	CDS	6399	7652	.	-	0	ID=cds-WP_000457885.1;Parent=gene-CFSAN001082_RS43570;Dbxref=GenBank:WP_000457885.1;Name=WP_000457885.1;Ontology_term=GO:0006310,GO:0015074,GO:0032196,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA,transposition|0032196||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000457886.1;locus_tag=CFSAN001082_RS43570;product=IS1/IS1595 family N-terminal zinc-binding domain-containing protein;protein_id=WP_000457885.1;transl_table=11
NZ_APAH01000407.1	RefSeq	gene	7670	8866	.	-	.	ID=gene-CFSAN001082_RS43575;Name=CFSAN001082_RS43575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43575;old_locus_tag=CFSAN001082_20011
NZ_APAH01000407.1	Protein Homology	CDS	7670	8866	.	-	0	ID=cds-WP_001519625.1;Parent=gene-CFSAN001082_RS43575;Dbxref=GenBank:WP_001519625.1;Name=WP_001519625.1;Ontology_term=GO:0018209,GO:0046500,GO:0016491,GO:0051539;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=peptidyl-serine modification|0018209||IEA,S-adenosylmethionine metabolic process|0046500||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001519625.1;locus_tag=CFSAN001082_RS43575;product=anaerobic sulfatase maturase;protein_id=WP_001519625.1;transl_table=11
NZ_APAH01000407.1	RefSeq	gene	8970	10463	.	-	.	ID=gene-CFSAN001082_RS43580;Name=CFSAN001082_RS43580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43580;old_locus_tag=CFSAN001082_20016
NZ_APAH01000407.1	Protein Homology	CDS	8970	10463	.	-	0	ID=cds-WP_000754367.1;Parent=gene-CFSAN001082_RS43580;Dbxref=GenBank:WP_000754367.1;Name=WP_000754367.1;Ontology_term=GO:0008484,GO:0046872;gbkey=CDS;go_function=sulfuric ester hydrolase activity|0008484||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459040.1;locus_tag=CFSAN001082_RS43580;product=sulfatase family protein;protein_id=WP_000754367.1;transl_table=11
NZ_APAH01000407.1	RefSeq	gene	10484	11248	.	-	.	ID=gene-CFSAN001082_RS43585;Name=CFSAN001082_RS43585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43585;old_locus_tag=CFSAN001082_20021
NZ_APAH01000407.1	Protein Homology	CDS	10484	11248	.	-	0	ID=cds-WP_000052612.1;Parent=gene-CFSAN001082_RS43585;Dbxref=GenBank:WP_000052612.1;Name=WP_000052612.1;Ontology_term=GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000052612.1;locus_tag=CFSAN001082_RS43585;product=outer membrane protein OmpK;protein_id=WP_000052612.1;transl_table=11
##sequence-region NZ_APAH01000408.1 1 849
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000408.1	RefSeq	region	1	849	.	+	.	ID=NZ_APAH01000408.1:1..849;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000408.1	RefSeq	gene	88	810	.	-	.	ID=gene-CFSAN001082_RS43590;Name=sopE2;gbkey=Gene;gene=sopE2;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43590;old_locus_tag=CFSAN001082_20026
NZ_APAH01000408.1	Protein Homology	CDS	88	810	.	-	0	ID=cds-WP_001648994.1;Parent=gene-CFSAN001082_RS43590;Dbxref=GenBank:WP_001648994.1;Name=WP_001648994.1;gbkey=CDS;gene=sopE2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460811.1;locus_tag=CFSAN001082_RS43590;product=SPI-1 type III secretion system guanine nucleotide exchange factor SopE2;protein_id=WP_001648994.1;transl_table=11
##sequence-region NZ_APAH01000409.1 1 24414
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000409.1	RefSeq	region	1	24414	.	+	.	ID=NZ_APAH01000409.1:1..24414;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000409.1	RefSeq	gene	28	3327	.	+	.	ID=gene-CFSAN001082_RS43595;Name=CFSAN001082_RS43595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43595;old_locus_tag=CFSAN001082_20031
NZ_APAH01000409.1	Protein Homology	CDS	28	3327	.	+	0	ID=cds-WP_023254789.1;Parent=gene-CFSAN001082_RS43595;Dbxref=GenBank:WP_023254789.1;Name=WP_023254789.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016505867.1;locus_tag=CFSAN001082_RS43595;product=STY4851/ECs_5259 family protein;protein_id=WP_023254789.1;transl_table=11
NZ_APAH01000409.1	RefSeq	gene	3340	9660	.	+	.	ID=gene-CFSAN001082_RS43600;Name=CFSAN001082_RS43600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43600;old_locus_tag=CFSAN001082_20036
NZ_APAH01000409.1	Protein Homology	CDS	3340	9660	.	+	0	ID=cds-WP_023254790.1;Parent=gene-CFSAN001082_RS43600;Dbxref=GenBank:WP_023254790.1;Name=WP_023254790.1;Ontology_term=GO:0003676,GO:0005524;gbkey=CDS;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000213429.1;locus_tag=CFSAN001082_RS43600;product=DEAD/DEAH box helicase;protein_id=WP_023254790.1;transl_table=11
NZ_APAH01000409.1	RefSeq	pseudogene	9818	9940	.	+	.	ID=gene-CFSAN001082_RS43605;Name=CFSAN001082_RS43605;end_range=9940,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS43605;old_locus_tag=CFSAN001082_20041;partial=true;pseudo=true
NZ_APAH01000409.1	Protein Homology	CDS	9818	9940	.	+	0	ID=cds-CFSAN001082_RS43605;Parent=gene-CFSAN001082_RS43605;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=9940,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611504.1;locus_tag=CFSAN001082_RS43605;partial=true;product=transposase;pseudo=true;transl_table=11
NZ_APAH01000409.1	RefSeq	pseudogene	10160	11174	.	-	.	ID=gene-CFSAN001082_RS43610;Name=CFSAN001082_RS43610;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS43610;old_locus_tag=CFSAN001082_20046;pseudo=true
NZ_APAH01000409.1	Protein Homology	CDS	10160	11174	.	-	0	ID=cds-CFSAN001082_RS43610;Parent=gene-CFSAN001082_RS43610;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_032444102.1;locus_tag=CFSAN001082_RS43610;product=IS110 family transposase;pseudo=true;transl_table=11
NZ_APAH01000409.1	RefSeq	pseudogene	11241	12223	.	+	.	ID=gene-CFSAN001082_RS43620;Name=CFSAN001082_RS43620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS43620;old_locus_tag=CFSAN001082_20056;partial=true;pseudo=true;start_range=.,11241
NZ_APAH01000409.1	Protein Homology	CDS	11241	12223	.	+	0	ID=cds-CFSAN001082_RS43620;Parent=gene-CFSAN001082_RS43620;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611505.1;locus_tag=CFSAN001082_RS43620;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,11241;transl_table=11
NZ_APAH01000409.1	RefSeq	gene	12347	12655	.	-	.	ID=gene-CFSAN001082_RS43625;Name=CFSAN001082_RS43625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43625;old_locus_tag=CFSAN001082_20061
NZ_APAH01000409.1	Protein Homology	CDS	12347	12655	.	-	0	ID=cds-WP_001199743.1;Parent=gene-CFSAN001082_RS43625;Dbxref=GenBank:WP_001199743.1;Name=WP_001199743.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001199743.1;locus_tag=CFSAN001082_RS43625;product=CcdB family protein;protein_id=WP_001199743.1;transl_table=11
NZ_APAH01000409.1	RefSeq	gene	12658	12897	.	-	.	ID=gene-CFSAN001082_RS43630;Name=CFSAN001082_RS43630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43630;old_locus_tag=CFSAN001082_20066
NZ_APAH01000409.1	Protein Homology	CDS	12658	12897	.	-	0	ID=cds-WP_000016244.1;Parent=gene-CFSAN001082_RS43630;Dbxref=GenBank:WP_000016244.1;Name=WP_000016244.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001118105.1;locus_tag=CFSAN001082_RS43630;product=type II toxin-antitoxin system CcdA family antitoxin;protein_id=WP_000016244.1;transl_table=11
NZ_APAH01000409.1	RefSeq	gene	13006	13254	.	-	.	ID=gene-CFSAN001082_RS43635;Name=CFSAN001082_RS43635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43635;old_locus_tag=CFSAN001082_20071
NZ_APAH01000409.1	Protein Homology	CDS	13006	13254	.	-	0	ID=cds-WP_000254751.1;Parent=gene-CFSAN001082_RS43635;Dbxref=GenBank:WP_000254751.1;Name=WP_000254751.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000168389.1;locus_tag=CFSAN001082_RS43635;product=CopG family ribbon-helix-helix protein;protein_id=WP_000254751.1;transl_table=11
NZ_APAH01000409.1	RefSeq	gene	13331	14164	.	-	.	ID=gene-CFSAN001082_RS43640;Name=CFSAN001082_RS43640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43640;old_locus_tag=CFSAN001082_20076
NZ_APAH01000409.1	Protein Homology	CDS	13331	14164	.	-	0	ID=cds-WP_023194725.1;Parent=gene-CFSAN001082_RS43640;Dbxref=GenBank:WP_023194725.1;Name=WP_023194725.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014227719.1;locus_tag=CFSAN001082_RS43640;product=DUF4942 domain-containing protein;protein_id=WP_023194725.1;transl_table=11
NZ_APAH01000409.1	RefSeq	gene	14318	15043	.	-	.	ID=gene-CFSAN001082_RS43645;Name=CFSAN001082_RS43645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43645;old_locus_tag=CFSAN001082_20081
NZ_APAH01000409.1	Protein Homology	CDS	14318	15043	.	-	0	ID=cds-WP_023194724.1;Parent=gene-CFSAN001082_RS43645;Dbxref=GenBank:WP_023194724.1;Name=WP_023194724.1;Ontology_term=GO:0051607;gbkey=CDS;go_process=defense response to virus|0051607||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001521981.1;locus_tag=CFSAN001082_RS43645;product=retron system putative HNH endonuclease;protein_id=WP_023194724.1;transl_table=11
NZ_APAH01000409.1	RefSeq	gene	15040	15249	.	-	.	ID=gene-CFSAN001082_RS48030;Name=CFSAN001082_RS48030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48030
NZ_APAH01000409.1	GeneMarkS-2+	CDS	15040	15249	.	-	0	ID=cds-WP_134944366.1;Parent=gene-CFSAN001082_RS48030;Dbxref=GenBank:WP_134944366.1;Name=WP_134944366.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48030;product=hypothetical protein;protein_id=WP_134944366.1;transl_table=11
NZ_APAH01000409.1	RefSeq	pseudogene	15246	16449	.	-	.	ID=gene-CFSAN001082_RS43650;Name=CFSAN001082_RS43650;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS43650;old_locus_tag=CFSAN001082_20086;pseudo=true
NZ_APAH01000409.1	Protein Homology	CDS	15246	16449	.	-	0	ID=cds-CFSAN001082_RS43650;Parent=gene-CFSAN001082_RS43650;Note=frameshifted;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462652.1;locus_tag=CFSAN001082_RS43650;product=AAA family ATPase;pseudo=true;transl_table=11
NZ_APAH01000409.1	RefSeq	pseudogene	16543	16911	.	-	.	ID=gene-CFSAN001082_RS47525;Name=CFSAN001082_RS47525;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47525;pseudo=true
NZ_APAH01000409.1	Protein Homology	CDS	16543	16911	.	-	0	ID=cds-CFSAN001082_RS47525;Parent=gene-CFSAN001082_RS47525;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001181796.1;locus_tag=CFSAN001082_RS47525;product=TA system toxin CbtA family protein;pseudo=true;transl_table=11
NZ_APAH01000409.1	RefSeq	gene	16926	17108	.	-	.	ID=gene-CFSAN001082_RS47530;Name=CFSAN001082_RS47530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47530
NZ_APAH01000409.1	Protein Homology	CDS	16926	17108	.	-	0	ID=cds-WP_071786581.1;Parent=gene-CFSAN001082_RS47530;Dbxref=GenBank:WP_071786581.1;Name=WP_071786581.1;Ontology_term=GO:0051495;gbkey=CDS;go_process=positive regulation of cytoskeleton organization|0051495||IEA;inference=COORDINATES: protein motif:HMM:NF017921.6;locus_tag=CFSAN001082_RS47530;product=type IV toxin-antitoxin system YeeU family antitoxin;protein_id=WP_071786581.1;transl_table=11
NZ_APAH01000409.1	RefSeq	pseudogene	17065	17256	.	-	.	ID=gene-CFSAN001082_RS43655;Name=CFSAN001082_RS43655;end_range=17256,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS43655;old_locus_tag=CFSAN001082_20091;partial=true;pseudo=true;start_range=.,17065
NZ_APAH01000409.1	Protein Homology	CDS	17065	17256	.	-	0	ID=cds-CFSAN001082_RS43655;Parent=gene-CFSAN001082_RS43655;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=17256,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000197552.1;locus_tag=CFSAN001082_RS43655;partial=true;product=DUF932 domain-containing protein;pseudo=true;start_range=.,17065;transl_table=11
NZ_APAH01000409.1	RefSeq	gene	17533	20946	.	+	.	ID=gene-CFSAN001082_RS43660;Name=CFSAN001082_RS43660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43660;old_locus_tag=CFSAN001082_20096
NZ_APAH01000409.1	Protein Homology	CDS	17533	20946	.	+	0	ID=cds-WP_023254792.1;Parent=gene-CFSAN001082_RS43660;Dbxref=GenBank:WP_023254792.1;Name=WP_023254792.1;Ontology_term=GO:0003677,GO:0005524,GO:0016787;gbkey=CDS;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000438152.1;locus_tag=CFSAN001082_RS43660;product=DEAD/DEAH box helicase family protein;protein_id=WP_023254792.1;transl_table=11
NZ_APAH01000409.1	RefSeq	gene	21007	22641	.	+	.	ID=gene-CFSAN001082_RS43665;Name=CFSAN001082_RS43665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43665;old_locus_tag=CFSAN001082_20101
NZ_APAH01000409.1	Protein Homology	CDS	21007	22641	.	+	0	ID=cds-WP_023254793.1;Parent=gene-CFSAN001082_RS43665;Dbxref=GenBank:WP_023254793.1;Name=WP_023254793.1;Ontology_term=GO:0009307,GO:0003677,GO:0008168,GO:1904047;gbkey=CDS;go_function=DNA binding|0003677||IEA,methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000627727.1;locus_tag=CFSAN001082_RS43665;product=type I restriction-modification system subunit M;protein_id=WP_023254793.1;transl_table=11
NZ_APAH01000409.1	RefSeq	gene	22638	23810	.	+	.	ID=gene-CFSAN001082_RS43670;Name=CFSAN001082_RS43670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43670;old_locus_tag=CFSAN001082_20106
NZ_APAH01000409.1	Protein Homology	CDS	22638	23810	.	+	0	ID=cds-WP_023254794.1;Parent=gene-CFSAN001082_RS43670;Dbxref=GenBank:WP_023254794.1;Name=WP_023254794.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001683505.1;locus_tag=CFSAN001082_RS43670;product=restriction endonuclease subunit S;protein_id=WP_023254794.1;transl_table=11
NZ_APAH01000409.1	RefSeq	pseudogene	23832	24414	.	+	.	ID=gene-CFSAN001082_RS43675;Name=CFSAN001082_RS43675;end_range=24414,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS43675;old_locus_tag=CFSAN001082_20111;partial=true;pseudo=true
NZ_APAH01000409.1	GeneMarkS-2+	CDS	23832	24414	.	+	0	ID=cds-CFSAN001082_RS43675;Parent=gene-CFSAN001082_RS43675;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=24414,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS43675;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000410.1 1 9932
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000410.1	RefSeq	region	1	9932	.	+	.	ID=NZ_APAH01000410.1:1..9932;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000410.1	RefSeq	gene	269	1150	.	-	.	ID=gene-CFSAN001082_RS43680;Name=yddG;gbkey=Gene;gene=yddG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43680;old_locus_tag=CFSAN001082_20116
NZ_APAH01000410.1	Protein Homology	CDS	269	1150	.	-	0	ID=cds-WP_023254796.1;Parent=gene-CFSAN001082_RS43680;Dbxref=GenBank:WP_023254796.1;Name=WP_023254796.1;gbkey=CDS;gene=yddG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000203799.1;locus_tag=CFSAN001082_RS43680;product=aromatic amino acid efflux DMT transporter YddG;protein_id=WP_023254796.1;transl_table=11
NZ_APAH01000410.1	RefSeq	gene	1428	4475	.	+	.	ID=gene-CFSAN001082_RS0123950;Name=fdnG;gbkey=Gene;gene=fdnG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123950
NZ_APAH01000410.1	Protein Homology	CDS	1428	4475	.	+	0	ID=cds-WP_079981061.1;Parent=gene-CFSAN001082_RS0123950;Dbxref=GenBank:WP_079981061.1;Name=WP_079981061.1;Ontology_term=GO:0015942,GO:0008863,GO:0009055,GO:0043546,GO:0047111,GO:0009326;gbkey=CDS;gene=fdnG;go_component=formate dehydrogenase complex|0009326||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,electron transfer activity|0009055||IEA,molybdopterin cofactor binding|0043546||IEA,formate dehydrogenase (cytochrome-c-553) activity|0047111||IEA;go_process=formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460529.1;locus_tag=CFSAN001082_RS0123950;product=formate dehydrogenase-N subunit alpha;protein_id=WP_079981061.1;transl_except=(pos:2013..2015%2Caa:Sec);transl_table=11
NZ_APAH01000410.1	RefSeq	gene	4489	5373	.	+	.	ID=gene-CFSAN001082_RS43685;Name=fdxH;gbkey=Gene;gene=fdxH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43685;old_locus_tag=CFSAN001082_20131
NZ_APAH01000410.1	Protein Homology	CDS	4489	5373	.	+	0	ID=cds-WP_000061599.1;Parent=gene-CFSAN001082_RS43685;Dbxref=GenBank:WP_000061599.1;Name=WP_000061599.1;Ontology_term=GO:0015944,GO:0008863,GO:0051539,GO:0016020;gbkey=CDS;gene=fdxH;go_component=membrane|0016020||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=formate oxidation|0015944||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460528.1;locus_tag=CFSAN001082_RS43685;product=formate dehydrogenase subunit beta;protein_id=WP_000061599.1;transl_table=11
NZ_APAH01000410.1	RefSeq	gene	5366	6022	.	+	.	ID=gene-CFSAN001082_RS43690;Name=fdnI;gbkey=Gene;gene=fdnI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43690;old_locus_tag=CFSAN001082_20136
NZ_APAH01000410.1	Protein Homology	CDS	5366	6022	.	+	0	ID=cds-WP_000045658.1;Parent=gene-CFSAN001082_RS43690;Dbxref=GenBank:WP_000045658.1;Name=WP_000045658.1;gbkey=CDS;gene=fdnI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460527.1;locus_tag=CFSAN001082_RS43690;product=formate dehydrogenase-N subunit gamma;protein_id=WP_000045658.1;transl_table=11
NZ_APAH01000410.1	RefSeq	gene	6121	7131	.	-	.	ID=gene-CFSAN001082_RS43695;Name=adhP;gbkey=Gene;gene=adhP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43695;old_locus_tag=CFSAN001082_20141
NZ_APAH01000410.1	Protein Homology	CDS	6121	7131	.	-	0	ID=cds-WP_000642447.1;Parent=gene-CFSAN001082_RS43695;Dbxref=GenBank:WP_000642447.1;Name=WP_000642447.1;gbkey=CDS;gene=adhP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460526.1;locus_tag=CFSAN001082_RS43695;product=alcohol dehydrogenase AdhP;protein_id=WP_000642447.1;transl_table=11
NZ_APAH01000410.1	RefSeq	gene	7413	9110	.	-	.	ID=gene-CFSAN001082_RS43700;Name=CFSAN001082_RS43700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43700;old_locus_tag=CFSAN001082_20146
NZ_APAH01000410.1	Protein Homology	CDS	7413	9110	.	-	0	ID=cds-WP_000450513.1;Parent=gene-CFSAN001082_RS43700;Dbxref=GenBank:WP_000450513.1;Name=WP_000450513.1;Ontology_term=GO:0004470,GO:0004471,GO:0046872,GO:0051287;gbkey=CDS;go_function=malic enzyme activity|0004470||IEA,malate dehydrogenase (decarboxylating) (NAD+) activity|0004471||IEA,metal ion binding|0046872||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460525.1;locus_tag=CFSAN001082_RS43700;product=NAD-dependent malic enzyme;protein_id=WP_000450513.1;transl_table=11
NZ_APAH01000410.1	RefSeq	gene	9287	9430	.	-	.	ID=gene-CFSAN001082_RS43705;Name=sra;gbkey=Gene;gene=sra;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43705;old_locus_tag=CFSAN001082_20151
NZ_APAH01000410.1	Protein Homology	CDS	9287	9430	.	-	0	ID=cds-WP_000841559.1;Parent=gene-CFSAN001082_RS43705;Dbxref=GenBank:WP_000841559.1;Name=WP_000841559.1;gbkey=CDS;gene=sra;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460524.1;locus_tag=CFSAN001082_RS43705;product=stationary-phase-induced ribosome-associated protein;protein_id=WP_000841559.1;transl_table=11
NZ_APAH01000410.1	RefSeq	gene	9525	9740	.	-	.	ID=gene-CFSAN001082_RS43710;Name=bdm;gbkey=Gene;gene=bdm;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43710;old_locus_tag=CFSAN001082_20156
NZ_APAH01000410.1	Protein Homology	CDS	9525	9740	.	-	0	ID=cds-WP_000495700.1;Parent=gene-CFSAN001082_RS43710;Dbxref=GenBank:WP_000495700.1;Name=WP_000495700.1;gbkey=CDS;gene=bdm;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460523.1;locus_tag=CFSAN001082_RS43710;product=biofilm-dependent modulation protein;protein_id=WP_000495700.1;transl_table=11
##sequence-region NZ_APAH01000411.1 1 5092
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000411.1	RefSeq	region	1	5092	.	+	.	ID=NZ_APAH01000411.1:1..5092;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000411.1	RefSeq	gene	1	103	.	-	.	ID=gene-CFSAN001082_RS48995;Name=CFSAN001082_RS48995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48995;old_locus_tag=CFSAN001082_20161;partial=true;start_range=.,1
NZ_APAH01000411.1	Protein Homology	CDS	1	103	.	-	0	ID=cds-WP_023254797.1;Parent=gene-CFSAN001082_RS48995;Dbxref=GenBank:WP_023254797.1;Name=WP_023254797.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460322.1;locus_tag=CFSAN001082_RS48995;partial=true;product=hypothetical protein;protein_id=WP_023254797.1;start_range=.,1;transl_table=11
NZ_APAH01000411.1	RefSeq	gene	117	1712	.	-	.	ID=gene-CFSAN001082_RS43720;Name=CFSAN001082_RS43720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43720;old_locus_tag=CFSAN001082_20166
NZ_APAH01000411.1	Protein Homology	CDS	117	1712	.	-	0	ID=cds-WP_000773598.1;Parent=gene-CFSAN001082_RS43720;Dbxref=GenBank:WP_000773598.1;Name=WP_000773598.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416209.1;locus_tag=CFSAN001082_RS43720;product=acyl CoA:acetate/3-ketoacid CoA transferase;protein_id=WP_000773598.1;transl_table=11
NZ_APAH01000411.1	RefSeq	gene	1867	2625	.	-	.	ID=gene-CFSAN001082_RS43725;Name=aroD;gbkey=Gene;gene=aroD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43725;old_locus_tag=CFSAN001082_20171
NZ_APAH01000411.1	Protein Homology	CDS	1867	2625	.	-	0	ID=cds-WP_000860221.1;Parent=gene-CFSAN001082_RS43725;Dbxref=GenBank:WP_000860221.1;Name=WP_000860221.1;Ontology_term=GO:0009423,GO:0003855;gbkey=CDS;gene=aroD;go_function=3-dehydroquinate dehydratase activity|0003855||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460324.1;locus_tag=CFSAN001082_RS43725;product=type I 3-dehydroquinate dehydratase;protein_id=WP_000860221.1;transl_table=11
NZ_APAH01000411.1	RefSeq	gene	2670	3536	.	-	.	ID=gene-CFSAN001082_RS43730;Name=ydiB;gbkey=Gene;gene=ydiB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43730;old_locus_tag=CFSAN001082_20176
NZ_APAH01000411.1	Protein Homology	CDS	2670	3536	.	-	0	ID=cds-WP_000383488.1;Parent=gene-CFSAN001082_RS43730;Dbxref=GenBank:WP_000383488.1;Name=WP_000383488.1;gbkey=CDS;gene=ydiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460325.1;locus_tag=CFSAN001082_RS43730;product=quinate/shikimate dehydrogenase;protein_id=WP_000383488.1;transl_table=11
NZ_APAH01000411.1	RefSeq	gene	3603	4838	.	-	.	ID=gene-CFSAN001082_RS43735;Name=CFSAN001082_RS43735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43735;old_locus_tag=CFSAN001082_20181
NZ_APAH01000411.1	Protein Homology	CDS	3603	4838	.	-	0	ID=cds-WP_000081211.1;Parent=gene-CFSAN001082_RS43735;Dbxref=GenBank:WP_000081211.1;Name=WP_000081211.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460326.1;locus_tag=CFSAN001082_RS43735;product=MFS transporter;protein_id=WP_000081211.1;transl_table=11
##sequence-region NZ_APAH01000412.1 1 8101
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000412.1	RefSeq	region	1	8101	.	+	.	ID=NZ_APAH01000412.1:1..8101;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000412.1	RefSeq	gene	36	1085	.	+	.	ID=gene-CFSAN001082_RS43740;Name=CFSAN001082_RS43740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43740;old_locus_tag=CFSAN001082_20186
NZ_APAH01000412.1	Protein Homology	CDS	36	1085	.	+	0	ID=cds-WP_000137966.1;Parent=gene-CFSAN001082_RS43740;Dbxref=GenBank:WP_000137966.1;Name=WP_000137966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461147.1;locus_tag=CFSAN001082_RS43740;product=YeiH family protein;protein_id=WP_000137966.1;transl_table=11
NZ_APAH01000412.1	RefSeq	gene	1164	2021	.	+	.	ID=gene-CFSAN001082_RS43745;Name=nfo;gbkey=Gene;gene=nfo;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43745;old_locus_tag=CFSAN001082_20191
NZ_APAH01000412.1	Protein Homology	CDS	1164	2021	.	+	0	ID=cds-WP_000873906.1;Parent=gene-CFSAN001082_RS43745;Dbxref=GenBank:WP_000873906.1;Name=WP_000873906.1;Ontology_term=GO:0006281,GO:0003677,GO:0008270;gbkey=CDS;gene=nfo;go_function=DNA binding|0003677||IEA,zinc ion binding|0008270||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461148.1;locus_tag=CFSAN001082_RS43745;product=deoxyribonuclease IV;protein_id=WP_000873906.1;transl_table=11
NZ_APAH01000412.1	RefSeq	gene	2086	3774	.	-	.	ID=gene-CFSAN001082_RS43750;Name=fruA;gbkey=Gene;gene=fruA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43750;old_locus_tag=CFSAN001082_20196
NZ_APAH01000412.1	Protein Homology	CDS	2086	3774	.	-	0	ID=cds-WP_023254799.1;Parent=gene-CFSAN001082_RS43750;Dbxref=GenBank:WP_023254799.1;Name=WP_023254799.1;Ontology_term=GO:0009401,GO:0008982,GO:0022877;gbkey=CDS;gene=fruA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461149.1;locus_tag=CFSAN001082_RS43750;product=PTS fructose transporter subunit IIBC;protein_id=WP_023254799.1;transl_table=11
NZ_APAH01000412.1	RefSeq	gene	3791	4729	.	-	.	ID=gene-CFSAN001082_RS43755;Name=fruK;gbkey=Gene;gene=fruK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43755;old_locus_tag=CFSAN001082_20201
NZ_APAH01000412.1	Protein Homology	CDS	3791	4729	.	-	0	ID=cds-WP_000091249.1;Parent=gene-CFSAN001082_RS43755;Dbxref=GenBank:WP_000091249.1;Name=WP_000091249.1;Ontology_term=GO:0008662,GO:0016773;gbkey=CDS;gene=fruK;go_function=1-phosphofructokinase activity|0008662||IEA,phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461150.1;locus_tag=CFSAN001082_RS43755;product=1-phosphofructokinase;protein_id=WP_000091249.1;transl_table=11
NZ_APAH01000412.1	RefSeq	gene	4729	5859	.	-	.	ID=gene-CFSAN001082_RS43760;Name=fruB;gbkey=Gene;gene=fruB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43760;old_locus_tag=CFSAN001082_20206
NZ_APAH01000412.1	Protein Homology	CDS	4729	5859	.	-	0	ID=cds-WP_000487287.1;Parent=gene-CFSAN001082_RS43760;Dbxref=GenBank:WP_000487287.1;Name=WP_000487287.1;gbkey=CDS;gene=fruB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461151.1;locus_tag=CFSAN001082_RS43760;product=fused PTS fructose transporter subunit IIA/HPr protein;protein_id=WP_000487287.1;transl_table=11
NZ_APAH01000412.1	RefSeq	gene	6228	7409	.	+	.	ID=gene-CFSAN001082_RS43765;Name=setB;gbkey=Gene;gene=setB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43765;old_locus_tag=CFSAN001082_20216
NZ_APAH01000412.1	Protein Homology	CDS	6228	7409	.	+	0	ID=cds-WP_023254800.1;Parent=gene-CFSAN001082_RS43765;Dbxref=GenBank:WP_023254800.1;Name=WP_023254800.1;Ontology_term=GO:0008643,GO:0055085,GO:0005351,GO:0022857,GO:0016020;gbkey=CDS;gene=setB;go_component=membrane|0016020||IEA;go_function=carbohydrate:proton symporter activity|0005351||IEA,transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461152.1;locus_tag=CFSAN001082_RS43765;product=sugar efflux transporter SetB;protein_id=WP_023254800.1;transl_table=11
NZ_APAH01000412.1	RefSeq	gene	7474	8101	.	-	.	ID=gene-CFSAN001082_RS43770;Name=CFSAN001082_RS43770;end_range=8101,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43770;old_locus_tag=CFSAN001082_20221;partial=true
NZ_APAH01000412.1	Protein Homology	CDS	7474	8101	.	-	1	ID=cds-WP_031613046.1;Parent=gene-CFSAN001082_RS43770;Dbxref=GenBank:WP_031613046.1;Name=WP_031613046.1;end_range=8101,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461153.1;locus_tag=CFSAN001082_RS43770;partial=true;product=GNVR domain-containing protein;protein_id=WP_031613046.1;transl_table=11
##sequence-region NZ_APAH01000413.1 1 5780
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000413.1	RefSeq	region	1	5780	.	+	.	ID=NZ_APAH01000413.1:1..5780;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000413.1	RefSeq	pseudogene	1	356	.	+	.	ID=gene-CFSAN001082_RS48405;Name=CFSAN001082_RS48405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48405;old_locus_tag=CFSAN001082_20226;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000413.1	Protein Homology	CDS	1	356	.	+	2	ID=cds-CFSAN001082_RS48405;Parent=gene-CFSAN001082_RS48405;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000401539.1;locus_tag=CFSAN001082_RS48405;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000413.1	RefSeq	gene	359	1216	.	+	.	ID=gene-CFSAN001082_RS43780;Name=mscS;gbkey=Gene;gene=mscS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43780;old_locus_tag=CFSAN001082_20231
NZ_APAH01000413.1	Protein Homology	CDS	359	1216	.	+	0	ID=cds-WP_000398251.1;Parent=gene-CFSAN001082_RS43780;Dbxref=GenBank:WP_000398251.1;Name=WP_000398251.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=mscS;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462983.1;locus_tag=CFSAN001082_RS43780;product=small-conductance mechanosensitive channel MscS;protein_id=WP_000398251.1;transl_table=11
NZ_APAH01000413.1	RefSeq	gene	1342	3774	.	-	.	ID=gene-CFSAN001082_RS43785;Name=metL;gbkey=Gene;gene=metL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43785;old_locus_tag=CFSAN001082_20236
NZ_APAH01000413.1	Protein Homology	CDS	1342	3774	.	-	0	ID=cds-WP_001528872.1;Parent=gene-CFSAN001082_RS43785;Dbxref=GenBank:WP_001528872.1;Name=WP_001528872.1;gbkey=CDS;gene=metL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000110794.1;locus_tag=CFSAN001082_RS43785;product=bifunctional aspartate kinase/homoserine dehydrogenase II;protein_id=WP_001528872.1;transl_table=11
NZ_APAH01000413.1	RefSeq	gene	3777	4937	.	-	.	ID=gene-CFSAN001082_RS43790;Name=metB;gbkey=Gene;gene=metB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43790;old_locus_tag=CFSAN001082_20241
NZ_APAH01000413.1	Protein Homology	CDS	3777	4937	.	-	0	ID=cds-WP_000197210.1;Parent=gene-CFSAN001082_RS43790;Dbxref=GenBank:WP_000197210.1;Name=WP_000197210.1;Ontology_term=GO:0019346,GO:0003824,GO:0030170;gbkey=CDS;gene=metB;go_function=catalytic activity|0003824||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=transsulfuration|0019346||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462981.1;locus_tag=CFSAN001082_RS43790;product=cystathionine gamma-synthase;protein_id=WP_000197210.1;transl_table=11
NZ_APAH01000413.1	RefSeq	gene	5202	5519	.	+	.	ID=gene-CFSAN001082_RS43795;Name=metJ;gbkey=Gene;gene=metJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43795;old_locus_tag=CFSAN001082_20246
NZ_APAH01000413.1	Protein Homology	CDS	5202	5519	.	+	0	ID=cds-WP_000852811.1;Parent=gene-CFSAN001082_RS43795;Dbxref=GenBank:WP_000852811.1;Name=WP_000852811.1;gbkey=CDS;gene=metJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015855437.1;locus_tag=CFSAN001082_RS43795;product=met regulon transcriptional regulator MetJ;protein_id=WP_000852811.1;transl_table=11
##sequence-region NZ_APAH01000414.1 1 454
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000414.1	RefSeq	region	1	454	.	+	.	ID=NZ_APAH01000414.1:1..454;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000414.1	RefSeq	pseudogene	1	454	.	-	.	ID=gene-CFSAN001082_RS48410;Name=CFSAN001082_RS48410;end_range=454,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48410;old_locus_tag=CFSAN001082_20256;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000414.1	Protein Homology	CDS	1	454	.	-	1	ID=cds-CFSAN001082_RS48410;Parent=gene-CFSAN001082_RS48410;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=454,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000406820.1;locus_tag=CFSAN001082_RS48410;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000415.1 1 632
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000415.1	RefSeq	region	1	632	.	+	.	ID=NZ_APAH01000415.1:1..632;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000415.1	RefSeq	pseudogene	154	246	.	+	.	ID=gene-CFSAN001082_RS48040;Name=CFSAN001082_RS48040;end_range=246,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48040;partial=true;pseudo=true;start_range=.,154
NZ_APAH01000415.1	Protein Homology	CDS	154	246	.	+	0	ID=cds-CFSAN001082_RS48040;Parent=gene-CFSAN001082_RS48040;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=246,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001116083.1;locus_tag=CFSAN001082_RS48040;partial=true;product=tail fiber assembly protein;pseudo=true;start_range=.,154;transl_table=11
NZ_APAH01000415.1	RefSeq	gene	396	620	.	-	.	ID=gene-CFSAN001082_RS49290;Name=CFSAN001082_RS49290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49290
NZ_APAH01000415.1	Protein Homology	CDS	396	620	.	-	0	ID=cds-WP_149022874.1;Parent=gene-CFSAN001082_RS49290;Dbxref=GenBank:WP_149022874.1;Name=WP_149022874.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF026627.6;locus_tag=CFSAN001082_RS49290;product=PagK family vesicle-borne virulence factor;protein_id=WP_149022874.1;transl_table=11
##sequence-region NZ_APAH01000416.1 1 283
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000416.1	RefSeq	region	1	283	.	+	.	ID=NZ_APAH01000416.1:1..283;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000416.1	RefSeq	gene	22	283	.	+	.	ID=gene-CFSAN001082_RS43805;Name=CFSAN001082_RS43805;end_range=283,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43805;old_locus_tag=CFSAN001082_20266;partial=true
NZ_APAH01000416.1	Protein Homology	CDS	22	283	.	+	0	ID=cds-WP_023254806.1;Parent=gene-CFSAN001082_RS43805;Dbxref=GenBank:WP_023254806.1;Name=WP_023254806.1;Ontology_term=GO:0016829;end_range=283,.;gbkey=CDS;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459742.1;locus_tag=CFSAN001082_RS43805;partial=true;product=fumarate hydratase;protein_id=WP_023254806.1;transl_table=11
##sequence-region NZ_APAH01000417.1 1 698
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000417.1	RefSeq	region	1	698	.	+	.	ID=NZ_APAH01000417.1:1..698;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000417.1	RefSeq	pseudogene	1	456	.	-	.	ID=gene-CFSAN001082_RS43810;Name=CFSAN001082_RS43810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS43810;old_locus_tag=CFSAN001082_20271;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000417.1	Protein Homology	CDS	1	456	.	-	0	ID=cds-CFSAN001082_RS43810;Parent=gene-CFSAN001082_RS43810;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460589.1;locus_tag=CFSAN001082_RS43810;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000418.1 1 2604
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000418.1	RefSeq	region	1	2604	.	+	.	ID=NZ_APAH01000418.1:1..2604;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000418.1	RefSeq	gene	122	1051	.	-	.	ID=gene-CFSAN001082_RS43815;Name=metA;gbkey=Gene;gene=metA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43815;old_locus_tag=CFSAN001082_20276
NZ_APAH01000418.1	Protein Homology	CDS	122	1051	.	-	0	ID=cds-WP_001122764.1;Parent=gene-CFSAN001082_RS43815;Dbxref=GenBank:WP_001122764.1;Name=WP_001122764.1;Ontology_term=GO:0019281,GO:0008899,GO:0005737;gbkey=CDS;gene=metA;go_component=cytoplasm|0005737||IEA;go_function=homoserine O-succinyltransferase activity|0008899||IEA;go_process=L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine|0019281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132837.1;locus_tag=CFSAN001082_RS43815;product=homoserine O-acetyltransferase MetA;protein_id=WP_001122764.1;transl_table=11
NZ_APAH01000418.1	RefSeq	gene	1208	1645	.	+	.	ID=gene-CFSAN001082_RS43820;Name=CFSAN001082_RS43820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43820;old_locus_tag=CFSAN001082_20281
NZ_APAH01000418.1	Protein Homology	CDS	1208	1645	.	+	0	ID=cds-WP_000973244.1;Parent=gene-CFSAN001082_RS43820;Dbxref=GenBank:WP_000973244.1;Name=WP_000973244.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463046.1;locus_tag=CFSAN001082_RS43820;product=acetyltransferase;protein_id=WP_000973244.1;transl_table=11
NZ_APAH01000418.1	RefSeq	gene	1935	2050	.	-	.	ID=gene-CFSAN001082_RS43825;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=CFSAN001082_RS43825;old_locus_tag=CFSAN001082_r20288
NZ_APAH01000418.1	cmsearch	rRNA	1935	2050	.	-	.	ID=rna-CFSAN001082_RS43825;Parent=gene-CFSAN001082_RS43825;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS43825;product=5S ribosomal RNA
NZ_APAH01000418.1	cmsearch	exon	1935	2050	.	-	.	ID=exon-CFSAN001082_RS43825-1;Parent=rna-CFSAN001082_RS43825;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS43825;product=5S ribosomal RNA
NZ_APAH01000418.1	RefSeq	gene	2144	2604	.	-	.	ID=gene-CFSAN001082_RS43830;Name=CFSAN001082_RS43830;end_range=2604,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS43830;old_locus_tag=CFSAN001082_r20290;partial=true
NZ_APAH01000418.1	cmsearch	rRNA	2144	2604	.	-	.	ID=rna-CFSAN001082_RS43830;Parent=gene-CFSAN001082_RS43830;Dbxref=RFAM:RF02541;end_range=2604,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS43830;partial=true;product=23S ribosomal RNA
NZ_APAH01000418.1	cmsearch	exon	2144	2604	.	-	.	ID=exon-CFSAN001082_RS43830-1;Parent=rna-CFSAN001082_RS43830;Dbxref=RFAM:RF02541;end_range=2604,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS43830;partial=true;product=23S ribosomal RNA
##sequence-region NZ_APAH01000419.1 1 17300
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000419.1	RefSeq	region	1	17300	.	+	.	ID=NZ_APAH01000419.1:1..17300;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000419.1	RefSeq	gene	169	423	.	+	.	ID=gene-CFSAN001082_RS43835;Name=bssS;gbkey=Gene;gene=bssS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43835;old_locus_tag=CFSAN001082_20290
NZ_APAH01000419.1	Protein Homology	CDS	169	423	.	+	0	ID=cds-WP_000414441.1;Parent=gene-CFSAN001082_RS43835;Dbxref=GenBank:WP_000414441.1;Name=WP_000414441.1;gbkey=CDS;gene=bssS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460132.3;locus_tag=CFSAN001082_RS43835;product=biofilm formation regulator BssS;protein_id=WP_000414441.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	536	1654	.	+	.	ID=gene-CFSAN001082_RS43840;Name=solA;gbkey=Gene;gene=solA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43840;old_locus_tag=CFSAN001082_20295
NZ_APAH01000419.1	Protein Homology	CDS	536	1654	.	+	0	ID=cds-WP_023254808.1;Parent=gene-CFSAN001082_RS43840;Dbxref=GenBank:WP_023254808.1;Name=WP_023254808.1;Ontology_term=GO:0050131;gbkey=CDS;gene=solA;go_function=N-methyl-L-amino-acid oxidase activity|0050131||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460131.1;locus_tag=CFSAN001082_RS43840;product=N-methyl-L-tryptophan oxidase;protein_id=WP_023254808.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	1695	1808	.	+	.	ID=gene-CFSAN001082_RS43845;Name=CFSAN001082_RS43845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43845;old_locus_tag=CFSAN001082_20300
NZ_APAH01000419.1	Protein Homology	CDS	1695	1808	.	+	0	ID=cds-WP_001253282.1;Parent=gene-CFSAN001082_RS43845;Dbxref=GenBank:WP_001253282.1;Name=WP_001253282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460130.1;locus_tag=CFSAN001082_RS43845;product=YceO family protein;protein_id=WP_001253282.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	2071	2643	.	+	.	ID=gene-CFSAN001082_RS43850;Name=CFSAN001082_RS43850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43850;old_locus_tag=CFSAN001082_20305
NZ_APAH01000419.1	Protein Homology	CDS	2071	2643	.	+	0	ID=cds-WP_023254809.1;Parent=gene-CFSAN001082_RS43850;Dbxref=GenBank:WP_023254809.1;Name=WP_023254809.1;Ontology_term=GO:0022904,GO:0009055,GO:0020037,GO:0046872,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460129.1;locus_tag=CFSAN001082_RS43850;product=cytochrome b;protein_id=WP_023254809.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	2640	3215	.	+	.	ID=gene-CFSAN001082_RS43855;Name=CFSAN001082_RS43855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43855;old_locus_tag=CFSAN001082_20310
NZ_APAH01000419.1	Protein Homology	CDS	2640	3215	.	+	0	ID=cds-WP_000739886.1;Parent=gene-CFSAN001082_RS43855;Dbxref=GenBank:WP_000739886.1;Name=WP_000739886.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460128.1;locus_tag=CFSAN001082_RS43855;product=YceI family protein;protein_id=WP_000739886.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	3267	4319	.	-	.	ID=gene-CFSAN001082_RS43860;Name=CFSAN001082_RS43860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43860;old_locus_tag=CFSAN001082_20315
NZ_APAH01000419.1	Protein Homology	CDS	3267	4319	.	-	0	ID=cds-WP_023181161.1;Parent=gene-CFSAN001082_RS43860;Dbxref=GenBank:WP_023181161.1;Name=WP_023181161.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460127.1;locus_tag=CFSAN001082_RS43860;product=rhodanese-related sulfurtransferase;protein_id=WP_023181161.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	4539	5459	.	+	.	ID=gene-CFSAN001082_RS43865;Name=CFSAN001082_RS43865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43865;old_locus_tag=CFSAN001082_20320
NZ_APAH01000419.1	Protein Homology	CDS	4539	5459	.	+	0	ID=cds-WP_000163973.1;Parent=gene-CFSAN001082_RS43865;Dbxref=GenBank:WP_000163973.1;Name=WP_000163973.1;Ontology_term=GO:0036104,GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=Kdo2-lipid A biosynthetic process|0036104||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460126.1;locus_tag=CFSAN001082_RS43865;product=Kdo(2)-lipid IV(A) acyltransferase;protein_id=WP_000163973.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	5614	6828	.	+	.	ID=gene-CFSAN001082_RS43870;Name=mdtG;gbkey=Gene;gene=mdtG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43870;old_locus_tag=CFSAN001082_20325
NZ_APAH01000419.1	Protein Homology	CDS	5614	6828	.	+	0	ID=cds-WP_000075048.1;Parent=gene-CFSAN001082_RS43870;Dbxref=GenBank:WP_000075048.1;Name=WP_000075048.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=mdtG;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460125.1;locus_tag=CFSAN001082_RS43870;product=multidrug efflux MFS transporter MdtG;protein_id=WP_000075048.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	6910	7284	.	+	.	ID=gene-CFSAN001082_RS43875;Name=CFSAN001082_RS43875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43875;old_locus_tag=CFSAN001082_20330
NZ_APAH01000419.1	Protein Homology	CDS	6910	7284	.	+	0	ID=cds-WP_000180050.1;Parent=gene-CFSAN001082_RS43875;Dbxref=GenBank:WP_000180050.1;Name=WP_000180050.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460124.1;locus_tag=CFSAN001082_RS43875;product=MysB family protein;protein_id=WP_000180050.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	7285	7512	.	-	.	ID=gene-CFSAN001082_RS43880;Name=CFSAN001082_RS43880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43880;old_locus_tag=CFSAN001082_20335
NZ_APAH01000419.1	Protein Homology	CDS	7285	7512	.	-	0	ID=cds-WP_001217832.1;Parent=gene-CFSAN001082_RS43880;Dbxref=GenBank:WP_001217832.1;Name=WP_001217832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460123.1;locus_tag=CFSAN001082_RS43880;product=YceK/YidQ family lipoprotein;protein_id=WP_001217832.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	7586	10129	.	-	.	ID=gene-CFSAN001082_RS43885;Name=mdoH;gbkey=Gene;gene=mdoH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43885;old_locus_tag=CFSAN001082_20340
NZ_APAH01000419.1	Protein Homology	CDS	7586	10129	.	-	0	ID=cds-WP_023254810.1;Parent=gene-CFSAN001082_RS43885;Dbxref=GenBank:WP_023254810.1;Name=WP_023254810.1;Ontology_term=GO:0016758;gbkey=CDS;gene=mdoH;go_function=hexosyltransferase activity|0016758||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001044602.1;locus_tag=CFSAN001082_RS43885;product=glucans biosynthesis glucosyltransferase MdoH;protein_id=WP_023254810.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	10122	11657	.	-	.	ID=gene-CFSAN001082_RS43890;Name=mdoG;gbkey=Gene;gene=mdoG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43890;old_locus_tag=CFSAN001082_20345
NZ_APAH01000419.1	Protein Homology	CDS	10122	11657	.	-	0	ID=cds-WP_001562609.1;Parent=gene-CFSAN001082_RS43890;Dbxref=GenBank:WP_001562609.1;Name=WP_001562609.1;gbkey=CDS;gene=mdoG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460121.1;locus_tag=CFSAN001082_RS43890;product=glucans biosynthesis protein MdoG;protein_id=WP_001562609.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	11929	13083	.	+	.	ID=gene-CFSAN001082_RS43895;Name=mdoC;gbkey=Gene;gene=mdoC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43895;old_locus_tag=CFSAN001082_20350
NZ_APAH01000419.1	Protein Homology	CDS	11929	13083	.	+	0	ID=cds-WP_023254811.1;Parent=gene-CFSAN001082_RS43895;Dbxref=GenBank:WP_023254811.1;Name=WP_023254811.1;Ontology_term=GO:0016740;gbkey=CDS;gene=mdoC;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460120.1;locus_tag=CFSAN001082_RS43895;product=glucans biosynthesis protein MdoC;protein_id=WP_023254811.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	13100	14587	.	-	.	ID=gene-CFSAN001082_RS43900;Name=CFSAN001082_RS43900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43900;old_locus_tag=CFSAN001082_20355
NZ_APAH01000419.1	Protein Homology	CDS	13100	14587	.	-	0	ID=cds-WP_000976323.1;Parent=gene-CFSAN001082_RS43900;Dbxref=GenBank:WP_000976323.1;Name=WP_000976323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706957.2;locus_tag=CFSAN001082_RS43900;product=phospholipase D family protein;protein_id=WP_000976323.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	14523	15062	.	-	.	ID=gene-CFSAN001082_RS43905;Name=ymdB;gbkey=Gene;gene=ymdB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43905;old_locus_tag=CFSAN001082_20360
NZ_APAH01000419.1	Protein Homology	CDS	14523	15062	.	-	0	ID=cds-WP_023254812.1;Parent=gene-CFSAN001082_RS43905;Dbxref=GenBank:WP_023254812.1;Name=WP_023254812.1;Ontology_term=GO:0003824;gbkey=CDS;gene=ymdB;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460118.1;locus_tag=CFSAN001082_RS43905;product=O-acetyl-ADP-ribose deacetylase;protein_id=WP_023254812.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	15148	15468	.	-	.	ID=gene-CFSAN001082_RS43910;Name=CFSAN001082_RS43910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43910;old_locus_tag=CFSAN001082_20365
NZ_APAH01000419.1	Protein Homology	CDS	15148	15468	.	-	0	ID=cds-WP_000111254.1;Parent=gene-CFSAN001082_RS43910;Dbxref=GenBank:WP_000111254.1;Name=WP_000111254.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460117.1;locus_tag=CFSAN001082_RS43910;product=type 1 fimbrial protein;protein_id=WP_000111254.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	15599	15925	.	-	.	ID=gene-CFSAN001082_RS0123960;Name=csgC;gbkey=Gene;gene=csgC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123960;old_locus_tag=CFSAN001082_20370
NZ_APAH01000419.1	Protein Homology	CDS	15599	15925	.	-	0	ID=cds-WP_000557256.1;Parent=gene-CFSAN001082_RS0123960;Dbxref=GenBank:WP_000557256.1;Name=WP_000557256.1;gbkey=CDS;gene=csgC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460116.1;locus_tag=CFSAN001082_RS0123960;product=curli assembly chaperone CsgC;protein_id=WP_000557256.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	15987	16442	.	-	.	ID=gene-CFSAN001082_RS43915;Name=csgA;gbkey=Gene;gene=csgA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43915;old_locus_tag=CFSAN001082_20375
NZ_APAH01000419.1	Protein Homology	CDS	15987	16442	.	-	0	ID=cds-WP_000771416.1;Parent=gene-CFSAN001082_RS43915;Dbxref=GenBank:WP_000771416.1;Name=WP_000771416.1;gbkey=CDS;gene=csgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460115.1;locus_tag=CFSAN001082_RS43915;product=curli major subunit CsgA;protein_id=WP_000771416.1;transl_table=11
NZ_APAH01000419.1	RefSeq	gene	16484	16939	.	-	.	ID=gene-CFSAN001082_RS43920;Name=csgB;gbkey=Gene;gene=csgB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43920;old_locus_tag=CFSAN001082_20380
NZ_APAH01000419.1	Protein Homology	CDS	16484	16939	.	-	0	ID=cds-WP_000791656.1;Parent=gene-CFSAN001082_RS43920;Dbxref=GenBank:WP_000791656.1;Name=WP_000791656.1;gbkey=CDS;gene=csgB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460114.1;locus_tag=CFSAN001082_RS43920;product=curli minor subunit CsgB;protein_id=WP_000791656.1;transl_table=11
##sequence-region NZ_APAH01000420.1 1 881
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000420.1	RefSeq	region	1	881	.	+	.	ID=NZ_APAH01000420.1:1..881;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000420.1	RefSeq	gene	177	881	.	+	.	ID=gene-CFSAN001082_RS43925;Name=CFSAN001082_RS43925;end_range=881,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43925;old_locus_tag=CFSAN001082_20385;partial=true
NZ_APAH01000420.1	Protein Homology	CDS	177	881	.	+	0	ID=cds-WP_023254813.1;Parent=gene-CFSAN001082_RS43925;Dbxref=GenBank:WP_023254813.1;Name=WP_023254813.1;Ontology_term=GO:0003677;end_range=881,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001005860.1;locus_tag=CFSAN001082_RS43925;partial=true;product=winged helix-turn-helix domain-containing protein;protein_id=WP_023254813.1;transl_table=11
##sequence-region NZ_APAH01000421.1 1 3092
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000421.1	RefSeq	region	1	3092	.	+	.	ID=NZ_APAH01000421.1:1..3092;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000421.1	RefSeq	pseudogene	1	298	.	+	.	ID=gene-CFSAN001082_RS48045;Name=CFSAN001082_RS48045;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48045;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000421.1	Protein Homology	CDS	1	298	.	+	0	ID=cds-CFSAN001082_RS48045;Parent=gene-CFSAN001082_RS48045;Note=frameshifted%3B incomplete%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459337.1;locus_tag=CFSAN001082_RS48045;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000421.1	RefSeq	gene	800	2374	.	+	.	ID=gene-CFSAN001082_RS43935;Name=CFSAN001082_RS43935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43935;old_locus_tag=CFSAN001082_20395
NZ_APAH01000421.1	Protein Homology	CDS	800	2374	.	+	0	ID=cds-WP_077911180.1;Parent=gene-CFSAN001082_RS43935;Dbxref=GenBank:WP_077911180.1;Name=WP_077911180.1;Ontology_term=GO:0007165,GO:0071111,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459338.1;locus_tag=CFSAN001082_RS43935;product=EAL domain-containing protein;protein_id=WP_077911180.1;transl_table=11
NZ_APAH01000421.1	RefSeq	gene	2474	3092	.	+	.	ID=gene-CFSAN001082_RS43940;Name=CFSAN001082_RS43940;end_range=3092,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43940;old_locus_tag=CFSAN001082_20400;partial=true
NZ_APAH01000421.1	Protein Homology	CDS	2474	3092	.	+	0	ID=cds-WP_023254816.1;Parent=gene-CFSAN001082_RS43940;Dbxref=GenBank:WP_023254816.1;Name=WP_023254816.1;Ontology_term=GO:0003677;end_range=3092,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459339.1;locus_tag=CFSAN001082_RS43940;partial=true;product=transcriptional regulator;protein_id=WP_023254816.1;transl_table=11
##sequence-region NZ_APAH01000422.1 1 14709
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000422.1	RefSeq	region	1	14709	.	+	.	ID=NZ_APAH01000422.1:1..14709;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000422.1	RefSeq	gene	243	1280	.	-	.	ID=gene-CFSAN001082_RS43945;Name=CFSAN001082_RS43945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43945;old_locus_tag=CFSAN001082_20405
NZ_APAH01000422.1	Protein Homology	CDS	243	1280	.	-	0	ID=cds-WP_023254817.1;Parent=gene-CFSAN001082_RS43945;Dbxref=GenBank:WP_023254817.1;Name=WP_023254817.1;Ontology_term=GO:0016628;gbkey=CDS;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors%2C NAD or NADP as acceptor|0016628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001517827.1;locus_tag=CFSAN001082_RS43945;product=NADP-dependent oxidoreductase;protein_id=WP_023254817.1;transl_table=11
NZ_APAH01000422.1	RefSeq	gene	1505	2020	.	+	.	ID=gene-CFSAN001082_RS43950;Name=mddA;gbkey=Gene;gene=mddA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43950;old_locus_tag=CFSAN001082_20410
NZ_APAH01000422.1	Protein Homology	CDS	1505	2020	.	+	0	ID=cds-WP_000155373.1;Parent=gene-CFSAN001082_RS43950;Dbxref=GenBank:WP_000155373.1;Name=WP_000155373.1;Note=Keep exception level- 87%25 similar to E. coli K12 P76112%2C different gene symbol;gbkey=CDS;gene=mddA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460549.1;locus_tag=CFSAN001082_RS43950;product=L-methionine sulfoximine/L-methionine sulfone acetyltransferase;protein_id=WP_000155373.1;transl_table=11
NZ_APAH01000422.1	RefSeq	gene	2020	2469	.	+	.	ID=gene-CFSAN001082_RS43955;Name=CFSAN001082_RS43955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43955;old_locus_tag=CFSAN001082_20415
NZ_APAH01000422.1	Protein Homology	CDS	2020	2469	.	+	0	ID=cds-WP_001076565.1;Parent=gene-CFSAN001082_RS43955;Dbxref=GenBank:WP_001076565.1;Name=WP_001076565.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460550.1;locus_tag=CFSAN001082_RS43955;product=DMT family transporter;protein_id=WP_001076565.1;transl_table=11
NZ_APAH01000422.1	RefSeq	gene	2474	2707	.	-	.	ID=gene-CFSAN001082_RS43960;Name=CFSAN001082_RS43960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43960;old_locus_tag=CFSAN001082_20420
NZ_APAH01000422.1	Protein Homology	CDS	2474	2707	.	-	0	ID=cds-WP_000018716.1;Parent=gene-CFSAN001082_RS43960;Dbxref=GenBank:WP_000018716.1;Name=WP_000018716.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460551.1;locus_tag=CFSAN001082_RS43960;product=YdcY family protein;protein_id=WP_000018716.1;transl_table=11
NZ_APAH01000422.1	RefSeq	gene	2931	4256	.	+	.	ID=gene-CFSAN001082_RS43965;Name=srfA;gbkey=Gene;gene=srfA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43965;old_locus_tag=CFSAN001082_20425
NZ_APAH01000422.1	Protein Homology	CDS	2931	4256	.	+	0	ID=cds-WP_023254818.1;Parent=gene-CFSAN001082_RS43965;Dbxref=GenBank:WP_023254818.1;Name=WP_023254818.1;gbkey=CDS;gene=srfA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460552.1;locus_tag=CFSAN001082_RS43965;product=virulence-associated effector SrfA;protein_id=WP_023254818.1;transl_table=11
NZ_APAH01000422.1	RefSeq	gene	4261	7242	.	+	.	ID=gene-CFSAN001082_RS43970;Name=CFSAN001082_RS43970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43970;old_locus_tag=CFSAN001082_20430
NZ_APAH01000422.1	Protein Homology	CDS	4261	7242	.	+	0	ID=cds-WP_023254819.1;Parent=gene-CFSAN001082_RS43970;Dbxref=GenBank:WP_023254819.1;Name=WP_023254819.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460553.1;locus_tag=CFSAN001082_RS43970;product=virulence factor SrfB;protein_id=WP_023254819.1;transl_table=11
NZ_APAH01000422.1	RefSeq	gene	7239	9383	.	+	.	ID=gene-CFSAN001082_RS43975;Name=srfC;gbkey=Gene;gene=srfC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43975;old_locus_tag=CFSAN001082_20435
NZ_APAH01000422.1	Protein Homology	CDS	7239	9383	.	+	0	ID=cds-WP_023254820.1;Parent=gene-CFSAN001082_RS43975;Dbxref=GenBank:WP_023254820.1;Name=WP_023254820.1;gbkey=CDS;gene=srfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460554.1;locus_tag=CFSAN001082_RS43975;product=virulence-associated effector SrfC;protein_id=WP_023254820.1;transl_table=11
NZ_APAH01000422.1	RefSeq	gene	9431	9604	.	-	.	ID=gene-CFSAN001082_RS43980;Name=CFSAN001082_RS43980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43980;old_locus_tag=CFSAN001082_20440
NZ_APAH01000422.1	Protein Homology	CDS	9431	9604	.	-	0	ID=cds-WP_001522647.1;Parent=gene-CFSAN001082_RS43980;Dbxref=GenBank:WP_001522647.1;Name=WP_001522647.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415962.2;locus_tag=CFSAN001082_RS43980;product=GhoT/OrtT family toxin;protein_id=WP_001522647.1;transl_table=11
NZ_APAH01000422.1	RefSeq	gene	9803	9898	.	+	.	ID=gene-CFSAN001082_RS46345;Name=yncL;gbkey=Gene;gene=yncL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46345;old_locus_tag=CFSAN001082_20445
NZ_APAH01000422.1	Protein Homology	CDS	9803	9898	.	+	0	ID=cds-WP_001103198.1;Parent=gene-CFSAN001082_RS46345;Dbxref=GenBank:WP_001103198.1;Name=WP_001103198.1;gbkey=CDS;gene=yncL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001103198.1;locus_tag=CFSAN001082_RS46345;product=stress response membrane protein YncL;protein_id=WP_001103198.1;transl_table=11
NZ_APAH01000422.1	RefSeq	gene	10003	11448	.	-	.	ID=gene-CFSAN001082_RS43985;Name=patD;gbkey=Gene;gene=patD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43985;old_locus_tag=CFSAN001082_20450
NZ_APAH01000422.1	Protein Homology	CDS	10003	11448	.	-	0	ID=cds-WP_000158093.1;Parent=gene-CFSAN001082_RS43985;Dbxref=GenBank:WP_000158093.1;Name=WP_000158093.1;Ontology_term=GO:0009447,GO:0019145,GO:0051287;gbkey=CDS;gene=patD;go_function=aminobutyraldehyde dehydrogenase (NAD+) activity|0019145||IEA,NAD binding|0051287||IEA;go_process=putrescine catabolic process|0009447||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460556.3;locus_tag=CFSAN001082_RS43985;product=aminobutyraldehyde dehydrogenase;protein_id=WP_000158093.1;transl_table=11
NZ_APAH01000422.1	RefSeq	gene	11563	12987	.	-	.	ID=gene-CFSAN001082_RS43990;Name=ycdR;gbkey=Gene;gene=ycdR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43990;old_locus_tag=CFSAN001082_20455
NZ_APAH01000422.1	Protein Homology	CDS	11563	12987	.	-	0	ID=cds-WP_000760692.1;Parent=gene-CFSAN001082_RS43990;Dbxref=GenBank:WP_000760692.1;Name=WP_000760692.1;gbkey=CDS;gene=ycdR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460557.1;locus_tag=CFSAN001082_RS43990;product=GntR family transcriptional regulator YdcR;protein_id=WP_000760692.1;transl_table=11
NZ_APAH01000422.1	RefSeq	gene	13123	13893	.	-	.	ID=gene-CFSAN001082_RS43995;Name=CFSAN001082_RS43995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS43995;old_locus_tag=CFSAN001082_20460
NZ_APAH01000422.1	Protein Homology	CDS	13123	13893	.	-	0	ID=cds-WP_023254821.1;Parent=gene-CFSAN001082_RS43995;Dbxref=GenBank:WP_023254821.1;Name=WP_023254821.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460558.1;locus_tag=CFSAN001082_RS43995;product=M15 family metallopeptidase;protein_id=WP_023254821.1;transl_table=11
NZ_APAH01000422.1	RefSeq	pseudogene	14152	14383	.	-	.	ID=gene-CFSAN001082_RS48420;Name=CFSAN001082_RS48420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48420;pseudo=true
NZ_APAH01000422.1	Protein Homology	CDS	14152	14383	.	-	0	ID=cds-CFSAN001082_RS48420;Parent=gene-CFSAN001082_RS48420;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448018.1;locus_tag=CFSAN001082_RS48420;product=hypothetical protein;pseudo=true;transl_table=11
NZ_APAH01000422.1	RefSeq	gene	14416	14709	.	-	.	ID=gene-CFSAN001082_RS44000;Name=CFSAN001082_RS44000;end_range=14709,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44000;old_locus_tag=CFSAN001082_20465;partial=true
NZ_APAH01000422.1	Protein Homology	CDS	14416	14709	.	-	0	ID=cds-WP_023254822.1;Parent=gene-CFSAN001082_RS44000;Dbxref=GenBank:WP_023254822.1;Name=WP_023254822.1;end_range=14709,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460560.1;locus_tag=CFSAN001082_RS44000;partial=true;product=hypothetical protein;protein_id=WP_023254822.1;transl_table=11
##sequence-region NZ_APAH01000423.1 1 1084
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000423.1	RefSeq	region	1	1084	.	+	.	ID=NZ_APAH01000423.1:1..1084;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000423.1	RefSeq	gene	31	747	.	-	.	ID=gene-CFSAN001082_RS44005;Name=CFSAN001082_RS44005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44005;old_locus_tag=CFSAN001082_20470
NZ_APAH01000423.1	Protein Homology	CDS	31	747	.	-	0	ID=cds-WP_000532939.1;Parent=gene-CFSAN001082_RS44005;Dbxref=GenBank:WP_000532939.1;Name=WP_000532939.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416490.1;locus_tag=CFSAN001082_RS44005;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=WP_000532939.1;transl_table=11
##sequence-region NZ_APAH01000424.1 1 209
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000424.1	RefSeq	region	1	209	.	+	.	ID=NZ_APAH01000424.1:1..209;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000424.1	RefSeq	gene	1	209	.	-	.	ID=gene-CFSAN001082_RS47555;Name=CFSAN001082_RS47555;end_range=209,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47555;old_locus_tag=CFSAN001082_20475;partial=true;start_range=.,1
NZ_APAH01000424.1	Protein Homology	CDS	1	209	.	-	0	ID=cds-WP_023254823.1;Parent=gene-CFSAN001082_RS47555;Dbxref=GenBank:WP_023254823.1;Name=WP_023254823.1;end_range=209,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010835222.1;locus_tag=CFSAN001082_RS47555;partial=true;product=DUF4765 family protein;protein_id=WP_023254823.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000425.1 1 14431
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000425.1	RefSeq	region	1	14431	.	+	.	ID=NZ_APAH01000425.1:1..14431;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000425.1	RefSeq	pseudogene	1	225	.	+	.	ID=gene-CFSAN001082_RS44010;Name=CFSAN001082_RS44010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS44010;old_locus_tag=CFSAN001082_20480;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000425.1	Protein Homology	CDS	1	225	.	+	0	ID=cds-CFSAN001082_RS44010;Parent=gene-CFSAN001082_RS44010;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000871810.1;locus_tag=CFSAN001082_RS44010;partial=true;product=fimbrial assembly protein;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000425.1	RefSeq	gene	254	2740	.	+	.	ID=gene-CFSAN001082_RS44015;Name=CFSAN001082_RS44015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44015;old_locus_tag=CFSAN001082_20485
NZ_APAH01000425.1	Protein Homology	CDS	254	2740	.	+	0	ID=cds-WP_023254825.1;Parent=gene-CFSAN001082_RS44015;Dbxref=GenBank:WP_023254825.1;Name=WP_023254825.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000413359.1;locus_tag=CFSAN001082_RS44015;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_023254825.1;transl_table=11
NZ_APAH01000425.1	RefSeq	gene	2756	3778	.	+	.	ID=gene-CFSAN001082_RS44020;Name=CFSAN001082_RS44020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44020;old_locus_tag=CFSAN001082_20490
NZ_APAH01000425.1	Protein Homology	CDS	2756	3778	.	+	0	ID=cds-WP_020899006.1;Parent=gene-CFSAN001082_RS44020;Dbxref=GenBank:WP_020899006.1;Name=WP_020899006.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000825913.1;locus_tag=CFSAN001082_RS44020;product=fimbrial protein;protein_id=WP_020899006.1;transl_table=11
NZ_APAH01000425.1	RefSeq	gene	3822	4136	.	-	.	ID=gene-CFSAN001082_RS44025;Name=rcnB;gbkey=Gene;gene=rcnB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44025;old_locus_tag=CFSAN001082_20495
NZ_APAH01000425.1	Protein Homology	CDS	3822	4136	.	-	0	ID=cds-WP_000837534.1;Parent=gene-CFSAN001082_RS44025;Dbxref=GenBank:WP_000837534.1;Name=WP_000837534.1;gbkey=CDS;gene=rcnB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461092.1;locus_tag=CFSAN001082_RS44025;product=Ni(II)/Co(II) efflux transporter accessory subunit RcnB;protein_id=WP_000837534.1;transl_table=11
NZ_APAH01000425.1	cmsearch	riboswitch	4419	4515	.	+	.	ID=id-NZ_APAH01000425.1:4419..4515;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch
NZ_APAH01000425.1	RefSeq	gene	4547	5344	.	+	.	ID=gene-CFSAN001082_RS44030;Name=thiM;gbkey=Gene;gene=thiM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44030;old_locus_tag=CFSAN001082_20500
NZ_APAH01000425.1	Protein Homology	CDS	4547	5344	.	+	0	ID=cds-WP_023254826.1;Parent=gene-CFSAN001082_RS44030;Dbxref=GenBank:WP_023254826.1;Name=WP_023254826.1;Ontology_term=GO:0009228,GO:0004417;gbkey=CDS;gene=thiM;go_function=hydroxyethylthiazole kinase activity|0004417||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461091.1;locus_tag=CFSAN001082_RS44030;product=hydroxyethylthiazole kinase;protein_id=WP_023254826.1;transl_table=11
NZ_APAH01000425.1	RefSeq	gene	5331	6131	.	+	.	ID=gene-CFSAN001082_RS44035;Name=thiD;gbkey=Gene;gene=thiD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44035;old_locus_tag=CFSAN001082_20505
NZ_APAH01000425.1	Protein Homology	CDS	5331	6131	.	+	0	ID=cds-WP_000822242.1;Parent=gene-CFSAN001082_RS44035;Dbxref=GenBank:WP_000822242.1;Name=WP_000822242.1;Ontology_term=GO:0009228,GO:0008902,GO:0008972;gbkey=CDS;gene=thiD;go_function=hydroxymethylpyrimidine kinase activity|0008902||IEA,phosphomethylpyrimidine kinase activity|0008972||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461090.1;locus_tag=CFSAN001082_RS44035;product=bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase;protein_id=WP_000822242.1;transl_table=11
NZ_APAH01000425.1	RefSeq	gene	6167	6913	.	+	.	ID=gene-CFSAN001082_RS44040;Name=CFSAN001082_RS44040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44040;old_locus_tag=CFSAN001082_20510
NZ_APAH01000425.1	Protein Homology	CDS	6167	6913	.	+	0	ID=cds-WP_000434062.1;Parent=gene-CFSAN001082_RS44040;Dbxref=GenBank:WP_000434062.1;Name=WP_000434062.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461089.1;locus_tag=CFSAN001082_RS44040;product=GntR family transcriptional regulator;protein_id=WP_000434062.1;transl_table=11
NZ_APAH01000425.1	RefSeq	gene	6887	7852	.	-	.	ID=gene-CFSAN001082_RS44045;Name=CFSAN001082_RS44045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44045;old_locus_tag=CFSAN001082_20515
NZ_APAH01000425.1	Protein Homology	CDS	6887	7852	.	-	0	ID=cds-WP_023254827.1;Parent=gene-CFSAN001082_RS44045;Dbxref=GenBank:WP_023254827.1;Name=WP_023254827.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461088.1;locus_tag=CFSAN001082_RS44045;product=PfkB family carbohydrate kinase;protein_id=WP_023254827.1;transl_table=11
NZ_APAH01000425.1	RefSeq	gene	7849	8853	.	-	.	ID=gene-CFSAN001082_RS44050;Name=CFSAN001082_RS44050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44050;old_locus_tag=CFSAN001082_20520
NZ_APAH01000425.1	Protein Homology	CDS	7849	8853	.	-	0	ID=cds-WP_000642793.1;Parent=gene-CFSAN001082_RS44050;Dbxref=GenBank:WP_000642793.1;Name=WP_000642793.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461087.1;locus_tag=CFSAN001082_RS44050;product=ADP-ribosylglycohydrolase family protein;protein_id=WP_000642793.1;transl_table=11
NZ_APAH01000425.1	RefSeq	gene	8850	10121	.	-	.	ID=gene-CFSAN001082_RS44055;Name=CFSAN001082_RS44055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44055;old_locus_tag=CFSAN001082_20525
NZ_APAH01000425.1	Protein Homology	CDS	8850	10121	.	-	0	ID=cds-WP_000858698.1;Parent=gene-CFSAN001082_RS44055;Dbxref=GenBank:WP_000858698.1;Name=WP_000858698.1;Ontology_term=GO:0015858,GO:0005337,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=nucleoside transmembrane transporter activity|0005337||IEA;go_process=nucleoside transport|0015858||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461086.1;locus_tag=CFSAN001082_RS44055;product=nucleoside permease;protein_id=WP_000858698.1;transl_table=11
NZ_APAH01000425.1	RefSeq	gene	10375	11427	.	+	.	ID=gene-CFSAN001082_RS44060;Name=fbaB;gbkey=Gene;gene=fbaB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44060;old_locus_tag=CFSAN001082_20530
NZ_APAH01000425.1	Protein Homology	CDS	10375	11427	.	+	0	ID=cds-WP_000129590.1;Parent=gene-CFSAN001082_RS44060;Dbxref=GenBank:WP_000129590.1;Name=WP_000129590.1;Ontology_term=GO:0004332;gbkey=CDS;gene=fbaB;go_function=fructose-bisphosphate aldolase activity|0004332||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006820796.1;locus_tag=CFSAN001082_RS44060;product=class I fructose-bisphosphate aldolase;protein_id=WP_000129590.1;transl_table=11
NZ_APAH01000425.1	RefSeq	gene	11480	12379	.	-	.	ID=gene-CFSAN001082_RS44065;Name=yegS;gbkey=Gene;gene=yegS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44065;old_locus_tag=CFSAN001082_20535
NZ_APAH01000425.1	Protein Homology	CDS	11480	12379	.	-	0	ID=cds-WP_001273393.1;Parent=gene-CFSAN001082_RS44065;Dbxref=GenBank:WP_001273393.1;Name=WP_001273393.1;Ontology_term=GO:0001727,GO:0046872;gbkey=CDS;gene=yegS;go_function=lipid kinase activity|0001727||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461084.1;locus_tag=CFSAN001082_RS44065;product=lipid kinase YegS;protein_id=WP_001273393.1;transl_table=11
NZ_APAH01000425.1	RefSeq	gene	12944	13279	.	+	.	ID=gene-CFSAN001082_RS0123980;Name=steD;gbkey=Gene;gene=steD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0123980
NZ_APAH01000425.1	Protein Homology	CDS	12944	13279	.	+	0	ID=cds-WP_001650047.1;Parent=gene-CFSAN001082_RS0123980;Dbxref=GenBank:WP_001650047.1;Name=WP_001650047.1;gbkey=CDS;gene=steD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461083.1;locus_tag=CFSAN001082_RS0123980;product=type III secretion system effector SteD;protein_id=WP_001650047.1;transl_table=11
NZ_APAH01000425.1	RefSeq	gene	13401	13817	.	+	.	ID=gene-CFSAN001082_RS44070;Name=CFSAN001082_RS44070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44070;old_locus_tag=CFSAN001082_20540
NZ_APAH01000425.1	Protein Homology	CDS	13401	13817	.	+	0	ID=cds-WP_001555792.1;Parent=gene-CFSAN001082_RS44070;Dbxref=GenBank:WP_001555792.1;Name=WP_001555792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461082.1;locus_tag=CFSAN001082_RS44070;product=CesT family type III secretion system chaperone;protein_id=WP_001555792.1;transl_table=11
NZ_APAH01000425.1	RefSeq	pseudogene	13853	14431	.	-	.	ID=gene-CFSAN001082_RS44075;Name=sseK2;end_range=14431,.;gbkey=Gene;gene=sseK2;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS44075;old_locus_tag=CFSAN001082_20545;partial=true;pseudo=true
NZ_APAH01000425.1	Protein Homology	CDS	13853	14431	.	-	0	ID=cds-CFSAN001082_RS44075;Parent=gene-CFSAN001082_RS44075;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=14431,.;gbkey=CDS;gene=sseK2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461081.1;locus_tag=CFSAN001082_RS44075;partial=true;product=type III secretion system effector arginine glycosyltransferase SseK2;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000426.1 1 8676
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000426.1	RefSeq	region	1	8676	.	+	.	ID=NZ_APAH01000426.1:1..8676;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000426.1	RefSeq	gene	180	473	.	-	.	ID=gene-CFSAN001082_RS44085;Name=cas2e;gbkey=Gene;gene=cas2e;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44085;old_locus_tag=CFSAN001082_20550
NZ_APAH01000426.1	Protein Homology	CDS	180	473	.	-	0	ID=cds-WP_023254829.1;Parent=gene-CFSAN001082_RS44085;Dbxref=GenBank:WP_023254829.1;Name=WP_023254829.1;Ontology_term=GO:0043571,GO:0004521;gbkey=CDS;gene=cas2e;go_function=RNA endonuclease activity|0004521||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311635.1;locus_tag=CFSAN001082_RS44085;product=type I-E CRISPR-associated endoribonuclease Cas2e;protein_id=WP_023254829.1;transl_table=11
NZ_APAH01000426.1	RefSeq	gene	473	1393	.	-	.	ID=gene-CFSAN001082_RS44090;Name=cas1e;gbkey=Gene;gene=cas1e;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44090;old_locus_tag=CFSAN001082_20555
NZ_APAH01000426.1	Protein Homology	CDS	473	1393	.	-	0	ID=cds-WP_000144830.1;Parent=gene-CFSAN001082_RS44090;Dbxref=GenBank:WP_000144830.1;Name=WP_000144830.1;Ontology_term=GO:0043571,GO:0051607,GO:0003676,GO:0004520,GO:0046872;gbkey=CDS;gene=cas1e;go_function=nucleic acid binding|0003676||IEA,DNA endonuclease activity|0004520||IEA,metal ion binding|0046872||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA,defense response to virus|0051607||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461859.1;locus_tag=CFSAN001082_RS44090;product=type I-E CRISPR-associated endonuclease Cas1e;protein_id=WP_000144830.1;transl_table=11
NZ_APAH01000426.1	RefSeq	gene	1390	2040	.	-	.	ID=gene-CFSAN001082_RS44095;Name=cas6e;gbkey=Gene;gene=cas6e;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44095;old_locus_tag=CFSAN001082_20560
NZ_APAH01000426.1	Protein Homology	CDS	1390	2040	.	-	0	ID=cds-WP_023254830.1;Parent=gene-CFSAN001082_RS44095;Dbxref=GenBank:WP_023254830.1;Name=WP_023254830.1;Ontology_term=GO:0043571;gbkey=CDS;gene=cas6e;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461860.1;locus_tag=CFSAN001082_RS44095;product=type I-E CRISPR-associated protein Cas6/Cse3/CasE;protein_id=WP_023254830.1;transl_table=11
NZ_APAH01000426.1	RefSeq	gene	2022	2768	.	-	.	ID=gene-CFSAN001082_RS44100;Name=cas5e;gbkey=Gene;gene=cas5e;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44100;old_locus_tag=CFSAN001082_20565
NZ_APAH01000426.1	Protein Homology	CDS	2022	2768	.	-	0	ID=cds-WP_000085112.1;Parent=gene-CFSAN001082_RS44100;Dbxref=GenBank:WP_000085112.1;Name=WP_000085112.1;Ontology_term=GO:0043571,GO:0051607,GO:0003723;gbkey=CDS;gene=cas5e;go_function=RNA binding|0003723||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA,defense response to virus|0051607||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461861.1;locus_tag=CFSAN001082_RS44100;product=type I-E CRISPR-associated protein Cas5/CasD;protein_id=WP_000085112.1;transl_table=11
NZ_APAH01000426.1	RefSeq	gene	2779	3837	.	-	.	ID=gene-CFSAN001082_RS44105;Name=cas7e;gbkey=Gene;gene=cas7e;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44105;old_locus_tag=CFSAN001082_20570
NZ_APAH01000426.1	Protein Homology	CDS	2779	3837	.	-	0	ID=cds-WP_000206415.1;Parent=gene-CFSAN001082_RS44105;Dbxref=GenBank:WP_000206415.1;Name=WP_000206415.1;Ontology_term=GO:0043571;gbkey=CDS;gene=cas7e;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461862.1;locus_tag=CFSAN001082_RS44105;product=type I-E CRISPR-associated protein Cas7/Cse4/CasC;protein_id=WP_000206415.1;transl_table=11
NZ_APAH01000426.1	RefSeq	gene	3851	4411	.	-	.	ID=gene-CFSAN001082_RS44110;Name=casB;gbkey=Gene;gene=casB;gene_biotype=protein_coding;gene_synonym=cse2;locus_tag=CFSAN001082_RS44110;old_locus_tag=CFSAN001082_20575
NZ_APAH01000426.1	Protein Homology	CDS	3851	4411	.	-	0	ID=cds-WP_000117944.1;Parent=gene-CFSAN001082_RS44110;Dbxref=GenBank:WP_000117944.1;Name=WP_000117944.1;Ontology_term=GO:0043571;gbkey=CDS;gene=casB;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461863.1;locus_tag=CFSAN001082_RS44110;product=type I-E CRISPR-associated protein Cse2/CasB;protein_id=WP_000117944.1;transl_table=11
NZ_APAH01000426.1	RefSeq	gene	4408	5964	.	-	.	ID=gene-CFSAN001082_RS44115;Name=casA;gbkey=Gene;gene=casA;gene_biotype=protein_coding;gene_synonym=cse1;locus_tag=CFSAN001082_RS44115;old_locus_tag=CFSAN001082_20580
NZ_APAH01000426.1	Protein Homology	CDS	4408	5964	.	-	0	ID=cds-WP_023254831.1;Parent=gene-CFSAN001082_RS44115;Dbxref=GenBank:WP_023254831.1;Name=WP_023254831.1;Ontology_term=GO:0043571;gbkey=CDS;gene=casA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461864.1;locus_tag=CFSAN001082_RS44115;product=type I-E CRISPR-associated protein Cse1/CasA;protein_id=WP_023254831.1;transl_table=11
NZ_APAH01000426.1	RefSeq	gene	5976	8639	.	-	.	ID=gene-CFSAN001082_RS44120;Name=CFSAN001082_RS44120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44120;old_locus_tag=CFSAN001082_20585
NZ_APAH01000426.1	Protein Homology	CDS	5976	8639	.	-	0	ID=cds-WP_023228029.1;Parent=gene-CFSAN001082_RS44120;Dbxref=GenBank:WP_023228029.1;Name=WP_023228029.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461865.1;locus_tag=CFSAN001082_RS44120;product=CRISPR-associated helicase/endonuclease Cas3;protein_id=WP_023228029.1;transl_table=11
##sequence-region NZ_APAH01000427.1 1 2643
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000427.1	RefSeq	region	1	2643	.	+	.	ID=NZ_APAH01000427.1:1..2643;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000427.1	RefSeq	gene	1	338	.	-	.	ID=gene-CFSAN001082_RS44125;Name=CFSAN001082_RS44125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44125;old_locus_tag=CFSAN001082_20590;partial=true;start_range=.,1
NZ_APAH01000427.1	Protein Homology	CDS	1	338	.	-	0	ID=cds-WP_023254832.1;Parent=gene-CFSAN001082_RS44125;Dbxref=GenBank:WP_023254832.1;Name=WP_023254832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000375124.1;locus_tag=CFSAN001082_RS44125;partial=true;product=Bax inhibitor-1 family protein;protein_id=WP_023254832.1;start_range=.,1;transl_table=11
NZ_APAH01000427.1	RefSeq	gene	733	820	.	+	.	ID=gene-CFSAN001082_RS44130;Name=CFSAN001082_RS44130;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS44130;old_locus_tag=CFSAN001082_t20612
NZ_APAH01000427.1	tRNAscan-SE	tRNA	733	820	.	+	.	ID=rna-CFSAN001082_RS44130;Parent=gene-CFSAN001082_RS44130;anticodon=(pos:767..769);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44130;product=tRNA-Ser
NZ_APAH01000427.1	tRNAscan-SE	exon	733	820	.	+	.	ID=exon-CFSAN001082_RS44130-1;Parent=rna-CFSAN001082_RS44130;anticodon=(pos:767..769);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44130;product=tRNA-Ser
NZ_APAH01000427.1	RefSeq	gene	957	1637	.	-	.	ID=gene-CFSAN001082_RS44135;Name=pipA;gbkey=Gene;gene=pipA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44135;old_locus_tag=CFSAN001082_20595
NZ_APAH01000427.1	Protein Homology	CDS	957	1637	.	-	0	ID=cds-WP_000938180.1;Parent=gene-CFSAN001082_RS44135;Dbxref=GenBank:WP_000938180.1;Name=WP_000938180.1;gbkey=CDS;gene=pipA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460060.1;locus_tag=CFSAN001082_RS44135;product=type III secretion system effector protease PipA;protein_id=WP_000938180.1;transl_table=11
NZ_APAH01000427.1	RefSeq	gene	1860	2643	.	-	.	ID=gene-CFSAN001082_RS44140;Name=pipB;end_range=2643,.;gbkey=Gene;gene=pipB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44140;old_locus_tag=CFSAN001082_20605;partial=true
NZ_APAH01000427.1	Protein Homology	CDS	1860	2643	.	-	1	ID=cds-WP_023254833.1;Parent=gene-CFSAN001082_RS44140;Dbxref=GenBank:WP_023254833.1;Name=WP_023254833.1;end_range=2643,.;gbkey=CDS;gene=pipB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460061.1;locus_tag=CFSAN001082_RS44140;partial=true;product=SPI-2 type III secretion system effector PipB;protein_id=WP_023254833.1;transl_table=11
##sequence-region NZ_APAH01000428.1 1 19446
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000428.1	RefSeq	region	1	19446	.	+	.	ID=NZ_APAH01000428.1:1..19446;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000428.1	RefSeq	gene	255	1184	.	+	.	ID=gene-CFSAN001082_RS44145;Name=CFSAN001082_RS44145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44145;old_locus_tag=CFSAN001082_20612
NZ_APAH01000428.1	Protein Homology	CDS	255	1184	.	+	0	ID=cds-WP_000178739.1;Parent=gene-CFSAN001082_RS44145;Dbxref=GenBank:WP_000178739.1;Name=WP_000178739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461707.1;locus_tag=CFSAN001082_RS44145;product=VirK family antimicrobial peptide resistance protein;protein_id=WP_000178739.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	1478	2374	.	+	.	ID=gene-CFSAN001082_RS44150;Name=CFSAN001082_RS44150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44150;old_locus_tag=CFSAN001082_20617
NZ_APAH01000428.1	Protein Homology	CDS	1478	2374	.	+	0	ID=cds-WP_000701504.1;Parent=gene-CFSAN001082_RS44150;Dbxref=GenBank:WP_000701504.1;Name=WP_000701504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461708.1;locus_tag=CFSAN001082_RS44150;product=antimicrobial resistance protein Mig-14;protein_id=WP_000701504.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	3094	4107	.	-	.	ID=gene-CFSAN001082_RS44160;Name=CFSAN001082_RS44160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44160;old_locus_tag=CFSAN001082_20627
NZ_APAH01000428.1	Protein Homology	CDS	3094	4107	.	-	0	ID=cds-WP_001059351.1;Parent=gene-CFSAN001082_RS44160;Dbxref=GenBank:WP_001059351.1;Name=WP_001059351.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461709.1;locus_tag=CFSAN001082_RS44160;product=HoxN/HupN/NixA family nickel/cobalt transporter;protein_id=WP_001059351.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	4240	5655	.	-	.	ID=gene-CFSAN001082_RS44165;Name=CFSAN001082_RS44165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44165;old_locus_tag=CFSAN001082_20632
NZ_APAH01000428.1	Protein Homology	CDS	4240	5655	.	-	0	ID=cds-WP_021294309.1;Parent=gene-CFSAN001082_RS44165;Dbxref=GenBank:WP_021294309.1;Name=WP_021294309.1;Ontology_term=GO:0007165,GO:0000155,GO:0004673,GO:0005524;gbkey=CDS;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,ATP binding|0005524||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461710.1;locus_tag=CFSAN001082_RS44165;product=sensor histidine kinase;protein_id=WP_021294309.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	5642	6316	.	-	.	ID=gene-CFSAN001082_RS44170;Name=tctD;gbkey=Gene;gene=tctD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44170;old_locus_tag=CFSAN001082_20637
NZ_APAH01000428.1	Protein Homology	CDS	5642	6316	.	-	0	ID=cds-WP_001237934.1;Parent=gene-CFSAN001082_RS44170;Dbxref=GenBank:WP_001237934.1;Name=WP_001237934.1;gbkey=CDS;gene=tctD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461711.1;locus_tag=CFSAN001082_RS44170;product=transcriptional regulator TctD;protein_id=WP_001237934.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	6471	7448	.	+	.	ID=gene-CFSAN001082_RS44175;Name=CFSAN001082_RS44175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44175;old_locus_tag=CFSAN001082_20642
NZ_APAH01000428.1	Protein Homology	CDS	6471	7448	.	+	0	ID=cds-WP_000744413.1;Parent=gene-CFSAN001082_RS44175;Dbxref=GenBank:WP_000744413.1;Name=WP_000744413.1;Ontology_term=GO:0042597;gbkey=CDS;go_component=periplasmic space|0042597||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461712.1;locus_tag=CFSAN001082_RS44175;product=Bug family tripartite tricarboxylate transporter substrate binding protein;protein_id=WP_000744413.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	7460	7894	.	+	.	ID=gene-CFSAN001082_RS44180;Name=CFSAN001082_RS44180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44180;old_locus_tag=CFSAN001082_20647
NZ_APAH01000428.1	Protein Homology	CDS	7460	7894	.	+	0	ID=cds-WP_001574835.1;Parent=gene-CFSAN001082_RS44180;Dbxref=GenBank:WP_001574835.1;Name=WP_001574835.1;Ontology_term=GO:0005215;gbkey=CDS;go_function=transporter activity|0005215||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461713.3;locus_tag=CFSAN001082_RS44180;product=tripartite tricarboxylate transporter TctB family protein;protein_id=WP_001574835.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	7905	9419	.	+	.	ID=gene-CFSAN001082_RS44185;Name=CFSAN001082_RS44185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44185;old_locus_tag=CFSAN001082_20652
NZ_APAH01000428.1	Protein Homology	CDS	7905	9419	.	+	0	ID=cds-WP_000382034.1;Parent=gene-CFSAN001082_RS44185;Dbxref=GenBank:WP_000382034.1;Name=WP_000382034.1;Ontology_term=GO:0006810,GO:0042597;gbkey=CDS;go_component=periplasmic space|0042597||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461714.1;locus_tag=CFSAN001082_RS44185;product=tripartite tricarboxylate transporter permease;protein_id=WP_000382034.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	9723	10700	.	+	.	ID=gene-CFSAN001082_RS44190;Name=glaH;gbkey=Gene;gene=glaH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44190;old_locus_tag=CFSAN001082_20657
NZ_APAH01000428.1	Protein Homology	CDS	9723	10700	.	+	0	ID=cds-WP_000993100.1;Parent=gene-CFSAN001082_RS44190;Dbxref=GenBank:WP_000993100.1;Name=WP_000993100.1;Ontology_term=GO:0050498;gbkey=CDS;gene=glaH;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C with 2-oxoglutarate as one donor%2C and the other dehydrogenated|0050498||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417145.4;locus_tag=CFSAN001082_RS44190;product=glutarate dioxygenase GlaH;protein_id=WP_000993100.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	10726	11994	.	+	.	ID=gene-CFSAN001082_RS44195;Name=lhgO;gbkey=Gene;gene=lhgO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44195;old_locus_tag=CFSAN001082_20662
NZ_APAH01000428.1	Protein Homology	CDS	10726	11994	.	+	0	ID=cds-WP_023254834.1;Parent=gene-CFSAN001082_RS44195;Dbxref=GenBank:WP_023254834.1;Name=WP_023254834.1;Ontology_term=GO:0016491;gbkey=CDS;gene=lhgO;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461716.1;locus_tag=CFSAN001082_RS44195;product=L-2-hydroxyglutarate oxidase;protein_id=WP_023254834.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	12016	13464	.	+	.	ID=gene-CFSAN001082_RS44200;Name=gabD;gbkey=Gene;gene=gabD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44200;old_locus_tag=CFSAN001082_20667
NZ_APAH01000428.1	Protein Homology	CDS	12016	13464	.	+	0	ID=cds-WP_023254835.1;Parent=gene-CFSAN001082_RS44200;Dbxref=GenBank:WP_023254835.1;Name=WP_023254835.1;Ontology_term=GO:0009450,GO:0009013;gbkey=CDS;gene=gabD;go_function=succinate-semialdehyde dehydrogenase [NAD(P)+] activity|0009013||IEA;go_process=gamma-aminobutyric acid catabolic process|0009450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461717.1;locus_tag=CFSAN001082_RS44200;product=NADP-dependent succinate-semialdehyde dehydrogenase;protein_id=WP_023254835.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	13479	14762	.	+	.	ID=gene-CFSAN001082_RS44205;Name=gabT;gbkey=Gene;gene=gabT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44205;old_locus_tag=CFSAN001082_20672
NZ_APAH01000428.1	Protein Homology	CDS	13479	14762	.	+	0	ID=cds-WP_001095558.1;Parent=gene-CFSAN001082_RS44205;Dbxref=GenBank:WP_001095558.1;Name=WP_001095558.1;Ontology_term=GO:0009448,GO:0030170;gbkey=CDS;gene=gabT;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=gamma-aminobutyric acid metabolic process|0009448||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461718.1;locus_tag=CFSAN001082_RS44205;product=4-aminobutyrate--2-oxoglutarate transaminase;protein_id=WP_001095558.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	14893	16293	.	+	.	ID=gene-CFSAN001082_RS44210;Name=gabP;gbkey=Gene;gene=gabP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44210;old_locus_tag=CFSAN001082_20677
NZ_APAH01000428.1	Protein Homology	CDS	14893	16293	.	+	0	ID=cds-WP_023254836.1;Parent=gene-CFSAN001082_RS44210;Dbxref=GenBank:WP_023254836.1;Name=WP_023254836.1;Ontology_term=GO:0006865,GO:0015185,GO:0016020;gbkey=CDS;gene=gabP;go_component=membrane|0016020||IEA;go_function=gamma-aminobutyric acid transmembrane transporter activity|0015185||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461719.1;locus_tag=CFSAN001082_RS44210;product=GABA permease;protein_id=WP_023254836.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	16335	17012	.	+	.	ID=gene-CFSAN001082_RS44215;Name=csiR;gbkey=Gene;gene=csiR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44215;old_locus_tag=CFSAN001082_20682
NZ_APAH01000428.1	Protein Homology	CDS	16335	17012	.	+	0	ID=cds-WP_000126152.1;Parent=gene-CFSAN001082_RS44215;Dbxref=GenBank:WP_000126152.1;Name=WP_000126152.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=csiR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461720.1;locus_tag=CFSAN001082_RS44215;product=DNA-binding transcriptional regulator CsiR;protein_id=WP_000126152.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	17034	17483	.	-	.	ID=gene-CFSAN001082_RS44220;Name=lysM;gbkey=Gene;gene=lysM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44220;old_locus_tag=CFSAN001082_20687
NZ_APAH01000428.1	Protein Homology	CDS	17034	17483	.	-	0	ID=cds-WP_000522406.1;Parent=gene-CFSAN001082_RS44220;Dbxref=GenBank:WP_000522406.1;Name=WP_000522406.1;gbkey=CDS;gene=lysM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461721.1;locus_tag=CFSAN001082_RS44220;product=peptidoglycan-binding protein LysM;protein_id=WP_000522406.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	17583	17741	.	-	.	ID=gene-CFSAN001082_RS44225;Name=CFSAN001082_RS44225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44225;old_locus_tag=CFSAN001082_20692
NZ_APAH01000428.1	Protein Homology	CDS	17583	17741	.	-	0	ID=cds-WP_000508175.1;Parent=gene-CFSAN001082_RS44225;Dbxref=GenBank:WP_000508175.1;Name=WP_000508175.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461722.1;locus_tag=CFSAN001082_RS44225;product=YqaE/Pmp3 family membrane protein;protein_id=WP_000508175.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	17924	18223	.	+	.	ID=gene-CFSAN001082_RS44230;Name=CFSAN001082_RS44230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44230;old_locus_tag=CFSAN001082_20697
NZ_APAH01000428.1	Protein Homology	CDS	17924	18223	.	+	0	ID=cds-WP_023194768.1;Parent=gene-CFSAN001082_RS44230;Dbxref=GenBank:WP_023194768.1;Name=WP_023194768.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461723.1;locus_tag=CFSAN001082_RS44230;product=ArsR/SmtB family transcription factor;protein_id=WP_023194768.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	18233	18760	.	+	.	ID=gene-CFSAN001082_RS44235;Name=CFSAN001082_RS44235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44235;old_locus_tag=CFSAN001082_20702
NZ_APAH01000428.1	Protein Homology	CDS	18233	18760	.	+	0	ID=cds-WP_023254837.1;Parent=gene-CFSAN001082_RS44235;Dbxref=GenBank:WP_023254837.1;Name=WP_023254837.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461724.1;locus_tag=CFSAN001082_RS44235;product=rhodanese family protein;protein_id=WP_023254837.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	18839	19018	.	+	.	ID=gene-CFSAN001082_RS44240;Name=CFSAN001082_RS44240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44240;old_locus_tag=CFSAN001082_20707
NZ_APAH01000428.1	Protein Homology	CDS	18839	19018	.	+	0	ID=cds-WP_000494942.1;Parent=gene-CFSAN001082_RS44240;Dbxref=GenBank:WP_000494942.1;Name=WP_000494942.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000494935.1;locus_tag=CFSAN001082_RS44240;product=hypothetical protein;protein_id=WP_000494942.1;transl_table=11
NZ_APAH01000428.1	RefSeq	gene	19108	19446	.	-	.	ID=gene-CFSAN001082_RS44245;Name=stpA;end_range=19446,.;gbkey=Gene;gene=stpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44245;old_locus_tag=CFSAN001082_20712;partial=true
NZ_APAH01000428.1	Protein Homology	CDS	19108	19446	.	-	0	ID=cds-WP_023253138.1;Parent=gene-CFSAN001082_RS44245;Dbxref=GenBank:WP_023253138.1;Name=WP_023253138.1;end_range=19446,.;gbkey=CDS;gene=stpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461725.1;locus_tag=CFSAN001082_RS44245;partial=true;product=DNA-binding protein StpA;protein_id=WP_023253138.1;transl_table=11
##sequence-region NZ_APAH01000429.1 1 293
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000429.1	RefSeq	region	1	293	.	+	.	ID=NZ_APAH01000429.1:1..293;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000429.1	RefSeq	gene	1	293	.	-	.	ID=gene-CFSAN001082_RS48590;Name=CFSAN001082_RS48590;end_range=293,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48590;old_locus_tag=CFSAN001082_20717;partial=true;start_range=.,1
NZ_APAH01000429.1	GeneMarkS-2+	CDS	1	293	.	-	2	ID=cds-WP_023254838.1;Parent=gene-CFSAN001082_RS48590;Dbxref=GenBank:WP_023254838.1;Name=WP_023254838.1;end_range=293,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48590;partial=true;product=hypothetical protein;protein_id=WP_023254838.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000430.1 1 7492
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000430.1	RefSeq	region	1	7492	.	+	.	ID=NZ_APAH01000430.1:1..7492;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000430.1	RefSeq	gene	99	1220	.	+	.	ID=gene-CFSAN001082_RS44255;Name=anmK;gbkey=Gene;gene=anmK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44255;old_locus_tag=CFSAN001082_20722
NZ_APAH01000430.1	Protein Homology	CDS	99	1220	.	+	0	ID=cds-WP_000835021.1;Parent=gene-CFSAN001082_RS44255;Dbxref=GenBank:WP_000835021.1;Name=WP_000835021.1;gbkey=CDS;gene=anmK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460409.1;locus_tag=CFSAN001082_RS44255;product=anhydro-N-acetylmuramic acid kinase;protein_id=WP_000835021.1;transl_table=11
NZ_APAH01000430.1	RefSeq	gene	1307	1636	.	+	.	ID=gene-CFSAN001082_RS44260;Name=mliC;gbkey=Gene;gene=mliC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44260;old_locus_tag=CFSAN001082_20727
NZ_APAH01000430.1	Protein Homology	CDS	1307	1636	.	+	0	ID=cds-WP_001132086.1;Parent=gene-CFSAN001082_RS44260;Dbxref=GenBank:WP_001132086.1;Name=WP_001132086.1;gbkey=CDS;gene=mliC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460410.1;locus_tag=CFSAN001082_RS44260;product=C-type lysozyme inhibitor;protein_id=WP_001132086.1;transl_table=11
NZ_APAH01000430.1	RefSeq	gene	1695	2351	.	+	.	ID=gene-CFSAN001082_RS44265;Name=pdxH;gbkey=Gene;gene=pdxH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44265;old_locus_tag=CFSAN001082_20732
NZ_APAH01000430.1	Protein Homology	CDS	1695	2351	.	+	0	ID=cds-WP_001282334.1;Parent=gene-CFSAN001082_RS44265;Dbxref=GenBank:WP_001282334.1;Name=WP_001282334.1;Ontology_term=GO:0008615,GO:0004733,GO:0010181;gbkey=CDS;gene=pdxH;go_function=pyridoxamine phosphate oxidase activity|0004733||IEA,FMN binding|0010181||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005127173.1;locus_tag=CFSAN001082_RS44265;product=pyridoxamine 5'-phosphate oxidase;protein_id=WP_001282334.1;transl_table=11
NZ_APAH01000430.1	RefSeq	gene	2478	3752	.	+	.	ID=gene-CFSAN001082_RS44270;Name=tyrS;gbkey=Gene;gene=tyrS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44270;old_locus_tag=CFSAN001082_20737
NZ_APAH01000430.1	Protein Homology	CDS	2478	3752	.	+	0	ID=cds-WP_000168626.1;Parent=gene-CFSAN001082_RS44270;Dbxref=GenBank:WP_000168626.1;Name=WP_000168626.1;Ontology_term=GO:0006437,GO:0000166,GO:0004831,GO:0005524;gbkey=CDS;gene=tyrS;go_function=nucleotide binding|0000166||IEA,tyrosine-tRNA ligase activity|0004831||IEA,ATP binding|0005524||IEA;go_process=tyrosyl-tRNA aminoacylation|0006437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460412.1;locus_tag=CFSAN001082_RS44270;product=tyrosine--tRNA ligase;protein_id=WP_000168626.1;transl_table=11
NZ_APAH01000430.1	RefSeq	gene	3812	4672	.	+	.	ID=gene-CFSAN001082_RS44275;Name=pdxY;gbkey=Gene;gene=pdxY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44275;old_locus_tag=CFSAN001082_20742
NZ_APAH01000430.1	Protein Homology	CDS	3812	4672	.	+	0	ID=cds-WP_000789732.1;Parent=gene-CFSAN001082_RS44275;Dbxref=GenBank:WP_000789732.1;Name=WP_000789732.1;Ontology_term=GO:0009443,GO:0008478;gbkey=CDS;gene=pdxY;go_function=pyridoxal kinase activity|0008478||IEA;go_process=pyridoxal 5'-phosphate salvage|0009443||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460413.1;locus_tag=CFSAN001082_RS44275;product=pyridoxal kinase PdxY;protein_id=WP_000789732.1;transl_table=11
NZ_APAH01000430.1	RefSeq	gene	4731	5336	.	-	.	ID=gene-CFSAN001082_RS44280;Name=gstA;gbkey=Gene;gene=gstA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44280;old_locus_tag=CFSAN001082_20747
NZ_APAH01000430.1	Protein Homology	CDS	4731	5336	.	-	0	ID=cds-WP_000765727.1;Parent=gene-CFSAN001082_RS44280;Dbxref=GenBank:WP_000765727.1;Name=WP_000765727.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;gene=gstA;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460414.1;locus_tag=CFSAN001082_RS44280;product=glutathione transferase GstA;protein_id=WP_000765727.1;transl_table=11
NZ_APAH01000430.1	RefSeq	gene	5441	6946	.	-	.	ID=gene-CFSAN001082_RS44285;Name=dtpA;gbkey=Gene;gene=dtpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44285;old_locus_tag=CFSAN001082_20752
NZ_APAH01000430.1	Protein Homology	CDS	5441	6946	.	-	0	ID=cds-WP_000100911.1;Parent=gene-CFSAN001082_RS44285;Dbxref=GenBank:WP_000100911.1;Name=WP_000100911.1;Ontology_term=GO:0015833,GO:0055085,GO:1904680,GO:0016020;gbkey=CDS;gene=dtpA;go_component=membrane|0016020||IEA;go_function=peptide transmembrane transporter activity|1904680||IEA;go_process=peptide transport|0015833||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460415.1;locus_tag=CFSAN001082_RS44285;product=dipeptide/tripeptide permease DtpA;protein_id=WP_000100911.1;transl_table=11
##sequence-region NZ_APAH01000431.1 1 32640
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000431.1	RefSeq	region	1	32640	.	+	.	ID=NZ_APAH01000431.1:1..32640;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000431.1	RefSeq	gene	41	1381	.	+	.	ID=gene-CFSAN001082_RS44290;Name=dcuB;gbkey=Gene;gene=dcuB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44290;old_locus_tag=CFSAN001082_20757
NZ_APAH01000431.1	Protein Homology	CDS	41	1381	.	+	0	ID=cds-WP_000899149.1;Parent=gene-CFSAN001082_RS44290;Dbxref=GenBank:WP_000899149.1;Name=WP_000899149.1;gbkey=CDS;gene=dcuB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463166.1;locus_tag=CFSAN001082_RS44290;product=anaerobic C4-dicarboxylate transporter DcuB;protein_id=WP_000899149.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	1477	3123	.	+	.	ID=gene-CFSAN001082_RS44295;Name=fumA;gbkey=Gene;gene=fumA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44295;old_locus_tag=CFSAN001082_20762
NZ_APAH01000431.1	Protein Homology	CDS	1477	3123	.	+	0	ID=cds-WP_000037187.1;Parent=gene-CFSAN001082_RS44295;Dbxref=GenBank:WP_000037187.1;Name=WP_000037187.1;gbkey=CDS;gene=fumA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463165.1;locus_tag=CFSAN001082_RS44295;product=class I fumarate hydratase FumA;protein_id=WP_000037187.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	3221	4651	.	-	.	ID=gene-CFSAN001082_RS44300;Name=melB;gbkey=Gene;gene=melB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44300;old_locus_tag=CFSAN001082_20767
NZ_APAH01000431.1	Protein Homology	CDS	3221	4651	.	-	0	ID=cds-WP_000028070.1;Parent=gene-CFSAN001082_RS44300;Dbxref=GenBank:WP_000028070.1;Name=WP_000028070.1;Ontology_term=GO:0006814,GO:0008643,GO:0015293,GO:0022857,GO:0016020;gbkey=CDS;gene=melB;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA,transmembrane transporter activity|0022857||IEA;go_process=sodium ion transport|0006814||IEA,carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463164.1;locus_tag=CFSAN001082_RS44300;product=melibiose:sodium transporter MelB;protein_id=WP_000028070.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	4735	6090	.	-	.	ID=gene-CFSAN001082_RS44305;Name=melA;gbkey=Gene;gene=melA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44305;old_locus_tag=CFSAN001082_20772
NZ_APAH01000431.1	Protein Homology	CDS	4735	6090	.	-	0	ID=cds-WP_023254839.1;Parent=gene-CFSAN001082_RS44305;Dbxref=GenBank:WP_023254839.1;Name=WP_023254839.1;gbkey=CDS;gene=melA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463163.1;locus_tag=CFSAN001082_RS44305;product=alpha-galactosidase;protein_id=WP_023254839.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	6359	7291	.	+	.	ID=gene-CFSAN001082_RS44310;Name=melR;gbkey=Gene;gene=melR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44310;old_locus_tag=CFSAN001082_20777
NZ_APAH01000431.1	Protein Homology	CDS	6359	7291	.	+	0	ID=cds-WP_023203285.1;Parent=gene-CFSAN001082_RS44310;Dbxref=GenBank:WP_023203285.1;Name=WP_023203285.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=melR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463162.1;locus_tag=CFSAN001082_RS44310;product=transcriptional regulator MelR;protein_id=WP_023203285.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	7524	9791	.	+	.	ID=gene-CFSAN001082_RS44315;Name=adiA;gbkey=Gene;gene=adiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44315;old_locus_tag=CFSAN001082_20782
NZ_APAH01000431.1	Protein Homology	CDS	7524	9791	.	+	0	ID=cds-WP_001538051.1;Parent=gene-CFSAN001082_RS44315;Dbxref=GenBank:WP_001538051.1;Name=WP_001538051.1;Ontology_term=GO:0006520,GO:0016831;gbkey=CDS;gene=adiA;go_function=carboxy-lyase activity|0016831||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709824.2;locus_tag=CFSAN001082_RS44315;product=arginine decarboxylase;protein_id=WP_001538051.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	10088	10849	.	+	.	ID=gene-CFSAN001082_RS44320;Name=CFSAN001082_RS44320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44320;old_locus_tag=CFSAN001082_20787
NZ_APAH01000431.1	Protein Homology	CDS	10088	10849	.	+	0	ID=cds-WP_001217083.1;Parent=gene-CFSAN001082_RS44320;Dbxref=GenBank:WP_001217083.1;Name=WP_001217083.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463160.1;locus_tag=CFSAN001082_RS44320;product=AraC family transcriptional regulator;protein_id=WP_001217083.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	10989	12326	.	+	.	ID=gene-CFSAN001082_RS44325;Name=adiC;gbkey=Gene;gene=adiC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44325;old_locus_tag=CFSAN001082_20792
NZ_APAH01000431.1	Protein Homology	CDS	10989	12326	.	+	0	ID=cds-WP_000093130.1;Parent=gene-CFSAN001082_RS44325;Dbxref=GenBank:WP_000093130.1;Name=WP_000093130.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=adiC;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463159.1;locus_tag=CFSAN001082_RS44325;product=arginine/agmatine antiporter;protein_id=WP_000093130.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	12460	14103	.	+	.	ID=gene-CFSAN001082_RS44330;Name=eptA;gbkey=Gene;gene=eptA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44330;old_locus_tag=CFSAN001082_20797
NZ_APAH01000431.1	Protein Homology	CDS	12460	14103	.	+	0	ID=cds-WP_023254840.1;Parent=gene-CFSAN001082_RS44330;Dbxref=GenBank:WP_023254840.1;Name=WP_023254840.1;Ontology_term=GO:0016772;gbkey=CDS;gene=eptA;go_function=transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463158.1;locus_tag=CFSAN001082_RS44330;product=phosphoethanolamine transferase EptA;protein_id=WP_023254840.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	14100	14768	.	+	.	ID=gene-CFSAN001082_RS44335;Name=pmrA;gbkey=Gene;gene=pmrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44335;old_locus_tag=CFSAN001082_20802
NZ_APAH01000431.1	Protein Homology	CDS	14100	14768	.	+	0	ID=cds-WP_023254841.1;Parent=gene-CFSAN001082_RS44335;Dbxref=GenBank:WP_023254841.1;Name=WP_023254841.1;gbkey=CDS;gene=pmrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463157.1;locus_tag=CFSAN001082_RS44335;product=two-component system response regulator PmrA;protein_id=WP_023254841.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	14778	15848	.	+	.	ID=gene-CFSAN001082_RS44340;Name=pmrB;gbkey=Gene;gene=pmrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44340;old_locus_tag=CFSAN001082_20807
NZ_APAH01000431.1	Protein Homology	CDS	14778	15848	.	+	0	ID=cds-WP_001212189.1;Parent=gene-CFSAN001082_RS44340;Dbxref=GenBank:WP_001212189.1;Name=WP_001212189.1;gbkey=CDS;gene=pmrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463156.1;locus_tag=CFSAN001082_RS44340;product=two-component system sensor histidine kinase PmrB;protein_id=WP_001212189.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	15856	15945	.	-	.	ID=gene-CFSAN001082_RS48435;Name=pmrR;gbkey=Gene;gene=pmrR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48435;old_locus_tag=CFSAN001082_20812
NZ_APAH01000431.1	Protein Homology	CDS	15856	15945	.	-	0	ID=cds-WP_000844399.1;Parent=gene-CFSAN001082_RS48435;Dbxref=GenBank:WP_000844399.1;Name=WP_000844399.1;gbkey=CDS;gene=pmrR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000844399.1;locus_tag=CFSAN001082_RS48435;product=LpxT activity modulator PmrR;protein_id=WP_000844399.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	16015	17517	.	-	.	ID=gene-CFSAN001082_RS44345;Name=proP;gbkey=Gene;gene=proP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44345;old_locus_tag=CFSAN001082_20817
NZ_APAH01000431.1	Protein Homology	CDS	16015	17517	.	-	0	ID=cds-WP_000919711.1;Parent=gene-CFSAN001082_RS44345;Dbxref=GenBank:WP_000919711.1;Name=WP_000919711.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=proP;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463155.1;locus_tag=CFSAN001082_RS44345;product=glycine betaine/L-proline transporter ProP;protein_id=WP_000919711.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	17985	18320	.	+	.	ID=gene-CFSAN001082_RS44350;Name=CFSAN001082_RS44350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44350;old_locus_tag=CFSAN001082_20822
NZ_APAH01000431.1	Protein Homology	CDS	17985	18320	.	+	0	ID=cds-WP_000056482.1;Parent=gene-CFSAN001082_RS44350;Dbxref=GenBank:WP_000056482.1;Name=WP_000056482.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463154.1;locus_tag=CFSAN001082_RS44350;product=zinc ribbon domain-containing protein YjdM;protein_id=WP_000056482.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	18440	18883	.	+	.	ID=gene-CFSAN001082_RS44355;Name=yjdN;gbkey=Gene;gene=yjdN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44355;old_locus_tag=CFSAN001082_20827
NZ_APAH01000431.1	Protein Homology	CDS	18440	18883	.	+	0	ID=cds-WP_001131305.1;Parent=gene-CFSAN001082_RS44355;Dbxref=GenBank:WP_001131305.1;Name=WP_001131305.1;gbkey=CDS;gene=yjdN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463153.1;locus_tag=CFSAN001082_RS44355;product=VOC family metalloprotein YjdN;protein_id=WP_001131305.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	19035	19469	.	+	.	ID=gene-CFSAN001082_RS44360;Name=phnO;gbkey=Gene;gene=phnO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44360;old_locus_tag=CFSAN001082_20832
NZ_APAH01000431.1	Protein Homology	CDS	19035	19469	.	+	0	ID=cds-WP_001549776.1;Parent=gene-CFSAN001082_RS44360;Dbxref=GenBank:WP_001549776.1;Name=WP_001549776.1;gbkey=CDS;gene=phnO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418517.1;locus_tag=CFSAN001082_RS44360;product=aminoalkylphosphonate N-acetyltransferase;protein_id=WP_001549776.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	19727	20635	.	+	.	ID=gene-CFSAN001082_RS44365;Name=lpxO;gbkey=Gene;gene=lpxO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44365;old_locus_tag=CFSAN001082_20837
NZ_APAH01000431.1	Protein Homology	CDS	19727	20635	.	+	0	ID=cds-WP_023194567.1;Parent=gene-CFSAN001082_RS44365;Dbxref=GenBank:WP_023194567.1;Name=WP_023194567.1;Ontology_term=GO:0018193;gbkey=CDS;gene=lpxO;go_process=peptidyl-amino acid modification|0018193||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463151.1;locus_tag=CFSAN001082_RS44365;product=lipid A hydroxylase LpxO;protein_id=WP_023194567.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	21001	23148	.	+	.	ID=gene-CFSAN001082_RS44375;Name=CFSAN001082_RS44375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44375;old_locus_tag=CFSAN001082_20847
NZ_APAH01000431.1	Protein Homology	CDS	21001	23148	.	+	0	ID=cds-WP_011233236.1;Parent=gene-CFSAN001082_RS44375;Dbxref=GenBank:WP_011233236.1;Name=WP_011233236.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463150.1;locus_tag=CFSAN001082_RS44375;product=formate dehydrogenase H subunit alpha%2C selenocysteine-containing;protein_id=WP_011233236.1;transl_except=(pos:21418..21420%2Caa:Sec);transl_table=11
NZ_APAH01000431.1	RefSeq	gene	23325	24014	.	+	.	ID=gene-CFSAN001082_RS44380;Name=yjcO;gbkey=Gene;gene=yjcO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44380;old_locus_tag=CFSAN001082_20852
NZ_APAH01000431.1	Protein Homology	CDS	23325	24014	.	+	0	ID=cds-WP_000771454.1;Parent=gene-CFSAN001082_RS44380;Dbxref=GenBank:WP_000771454.1;Name=WP_000771454.1;gbkey=CDS;gene=yjcO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463149.1;locus_tag=CFSAN001082_RS44380;product=Sel1 family TPR-like repeat protein YjcO;protein_id=WP_000771454.1;transl_table=11
NZ_APAH01000431.1	RefSeq	pseudogene	24091	24167	.	-	.	ID=gene-CFSAN001082_RS49295;Name=CFSAN001082_RS49295;end_range=24167,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49295;partial=true;pseudo=true;start_range=.,24091
NZ_APAH01000431.1	Protein Homology	CDS	24091	24167	.	-	0	ID=cds-CFSAN001082_RS49295;Parent=gene-CFSAN001082_RS49295;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=24167,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=CFSAN001082_RS49295;partial=true;product=hypothetical protein;pseudo=true;start_range=.,24091;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	24172	25482	.	-	.	ID=gene-CFSAN001082_RS44385;Name=gltP;gbkey=Gene;gene=gltP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44385;old_locus_tag=CFSAN001082_20857
NZ_APAH01000431.1	Protein Homology	CDS	24172	25482	.	-	0	ID=cds-WP_000793278.1;Parent=gene-CFSAN001082_RS44385;Dbxref=GenBank:WP_000793278.1;Name=WP_000793278.1;Ontology_term=GO:0006835,GO:0015293,GO:0016020;gbkey=CDS;gene=gltP;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=dicarboxylic acid transport|0006835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463148.1;locus_tag=CFSAN001082_RS44385;product=glutamate/aspartate:proton symporter GltP;protein_id=WP_000793278.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	25827	26447	.	-	.	ID=gene-CFSAN001082_RS44390;Name=nrfG;gbkey=Gene;gene=nrfG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44390;old_locus_tag=CFSAN001082_20862
NZ_APAH01000431.1	Protein Homology	CDS	25827	26447	.	-	0	ID=cds-WP_000083232.1;Parent=gene-CFSAN001082_RS44390;Dbxref=GenBank:WP_000083232.1;Name=WP_000083232.1;gbkey=CDS;gene=nrfG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463147.1;locus_tag=CFSAN001082_RS44390;product=heme lyase NrfEFG subunit NrfG;protein_id=WP_000083232.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	26444	28666	.	-	.	ID=gene-CFSAN001082_RS44395;Name=nrfEF;gbkey=Gene;gene=nrfEF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44395;old_locus_tag=CFSAN001082_20867
NZ_APAH01000431.1	Protein Homology	CDS	26444	28666	.	-	0	ID=cds-WP_023224113.1;Parent=gene-CFSAN001082_RS44395;Dbxref=GenBank:WP_023224113.1;Name=WP_023224113.1;gbkey=CDS;gene=nrfEF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463146.1;locus_tag=CFSAN001082_RS44395;product=heme lyase NrfEFG subunit NrfEF;protein_id=WP_023224113.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	28659	29615	.	-	.	ID=gene-CFSAN001082_RS44400;Name=nrfD;gbkey=Gene;gene=nrfD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44400;old_locus_tag=CFSAN001082_20872
NZ_APAH01000431.1	Protein Homology	CDS	28659	29615	.	-	0	ID=cds-WP_021001034.1;Parent=gene-CFSAN001082_RS44400;Dbxref=GenBank:WP_021001034.1;Name=WP_021001034.1;gbkey=CDS;gene=nrfD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463145.1;locus_tag=CFSAN001082_RS44400;product=cytochrome c nitrite reductase subunit NrfD;protein_id=WP_021001034.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	29612	30283	.	-	.	ID=gene-CFSAN001082_RS44405;Name=nrfC;gbkey=Gene;gene=nrfC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44405;old_locus_tag=CFSAN001082_20877
NZ_APAH01000431.1	Protein Homology	CDS	29612	30283	.	-	0	ID=cds-WP_023254842.1;Parent=gene-CFSAN001082_RS44405;Dbxref=GenBank:WP_023254842.1;Name=WP_023254842.1;gbkey=CDS;gene=nrfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463144.1;locus_tag=CFSAN001082_RS44405;product=cytochrome c nitrite reductase Fe-S protein;protein_id=WP_023254842.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	30280	30846	.	-	.	ID=gene-CFSAN001082_RS44410;Name=nrfB;gbkey=Gene;gene=nrfB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44410;old_locus_tag=CFSAN001082_20882
NZ_APAH01000431.1	Protein Homology	CDS	30280	30846	.	-	0	ID=cds-WP_017441244.1;Parent=gene-CFSAN001082_RS44410;Dbxref=GenBank:WP_017441244.1;Name=WP_017441244.1;Ontology_term=GO:0008152,GO:0042597;gbkey=CDS;gene=nrfB;go_component=periplasmic space|0042597||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418495.2;locus_tag=CFSAN001082_RS44410;product=cytochrome c nitrite reductase pentaheme subunit;protein_id=WP_017441244.1;transl_table=11
NZ_APAH01000431.1	RefSeq	gene	30958	32394	.	-	.	ID=gene-CFSAN001082_RS44415;Name=nrfA;gbkey=Gene;gene=nrfA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44415;old_locus_tag=CFSAN001082_20887
NZ_APAH01000431.1	Protein Homology	CDS	30958	32394	.	-	0	ID=cds-WP_001527354.1;Parent=gene-CFSAN001082_RS44415;Dbxref=GenBank:WP_001527354.1;Name=WP_001527354.1;Ontology_term=GO:0008152,GO:0005509,GO:0020037,GO:0042279,GO:0042597;gbkey=CDS;gene=nrfA;go_component=periplasmic space|0042597||IEA;go_function=calcium ion binding|0005509||IEA,heme binding|0020037||IEA,nitrite reductase (cytochrome%2C ammonia-forming) activity|0042279||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463142.1;locus_tag=CFSAN001082_RS44415;product=ammonia-forming nitrite reductase cytochrome c552 subunit;protein_id=WP_001527354.1;transl_table=11
##sequence-region NZ_APAH01000432.1 1 8962
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000432.1	RefSeq	region	1	8962	.	+	.	ID=NZ_APAH01000432.1:1..8962;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000432.1	RefSeq	gene	107	928	.	+	.	ID=gene-CFSAN001082_RS44425;Name=CFSAN001082_RS44425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44425;old_locus_tag=CFSAN001082_20897
NZ_APAH01000432.1	Protein Homology	CDS	107	928	.	+	0	ID=cds-WP_000119391.1;Parent=gene-CFSAN001082_RS44425;Dbxref=GenBank:WP_000119391.1;Name=WP_000119391.1;Ontology_term=GO:0005975,GO:0016787,GO:0016810,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459301.1;locus_tag=CFSAN001082_RS44425;product=polysaccharide deacetylase family protein;protein_id=WP_000119391.1;transl_table=11
NZ_APAH01000432.1	RefSeq	pseudogene	1011	1248	.	+	.	ID=gene-CFSAN001082_RS44430;Name=CFSAN001082_RS44430;end_range=1248,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS44430;old_locus_tag=CFSAN001082_20902;partial=true;pseudo=true
NZ_APAH01000432.1	Protein Homology	CDS	1011	1248	.	+	0	ID=cds-CFSAN001082_RS44430;Parent=gene-CFSAN001082_RS44430;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1248,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012602066.1;locus_tag=CFSAN001082_RS44430;partial=true;product=PerC family transcriptional regulator;pseudo=true;transl_table=11
NZ_APAH01000432.1	RefSeq	gene	1745	2692	.	+	.	ID=gene-CFSAN001082_RS44440;Name=CFSAN001082_RS44440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44440;old_locus_tag=CFSAN001082_20912
NZ_APAH01000432.1	Protein Homology	CDS	1745	2692	.	+	0	ID=cds-WP_000970302.1;Parent=gene-CFSAN001082_RS44440;Dbxref=GenBank:WP_000970302.1;Name=WP_000970302.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459302.1;locus_tag=CFSAN001082_RS44440;product=LysR family transcriptional regulator;protein_id=WP_000970302.1;transl_table=11
NZ_APAH01000432.1	RefSeq	gene	2812	3027	.	+	.	ID=gene-CFSAN001082_RS0124010;Name=CFSAN001082_RS0124010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0124010
NZ_APAH01000432.1	Protein Homology	CDS	2812	3027	.	+	0	ID=cds-WP_031613066.1;Parent=gene-CFSAN001082_RS0124010;Dbxref=GenBank:WP_031613066.1;Name=WP_031613066.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459303.1;locus_tag=CFSAN001082_RS0124010;product=hypothetical protein;protein_id=WP_031613066.1;transl_table=11
NZ_APAH01000432.1	RefSeq	gene	3031	3750	.	-	.	ID=gene-CFSAN001082_RS44445;Name=pagN;gbkey=Gene;gene=pagN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44445;old_locus_tag=CFSAN001082_20917
NZ_APAH01000432.1	Protein Homology	CDS	3031	3750	.	-	0	ID=cds-WP_023254844.1;Parent=gene-CFSAN001082_RS44445;Dbxref=GenBank:WP_023254844.1;Name=WP_023254844.1;gbkey=CDS;gene=pagN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459304.1;locus_tag=CFSAN001082_RS44445;product=adhesin/invasin protein PagN;protein_id=WP_023254844.1;transl_table=11
NZ_APAH01000432.1	RefSeq	gene	4081	4488	.	-	.	ID=gene-CFSAN001082_RS44450;Name=CFSAN001082_RS44450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44450;old_locus_tag=CFSAN001082_20922
NZ_APAH01000432.1	Protein Homology	CDS	4081	4488	.	-	0	ID=cds-WP_000788200.1;Parent=gene-CFSAN001082_RS44450;Dbxref=GenBank:WP_000788200.1;Name=WP_000788200.1;Ontology_term=GO:0061077,GO:0044183,GO:0051082;gbkey=CDS;go_function=protein folding chaperone|0044183||IEA,unfolded protein binding|0051082||IEA;go_process=chaperone-mediated protein folding|0061077||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459305.1;locus_tag=CFSAN001082_RS44450;product=Spy/CpxP family protein refolding chaperone;protein_id=WP_000788200.1;transl_table=11
NZ_APAH01000432.1	RefSeq	gene	4859	5626	.	-	.	ID=gene-CFSAN001082_RS44455;Name=CFSAN001082_RS44455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44455;old_locus_tag=CFSAN001082_20927
NZ_APAH01000432.1	Protein Homology	CDS	4859	5626	.	-	0	ID=cds-WP_000015789.1;Parent=gene-CFSAN001082_RS44455;Dbxref=GenBank:WP_000015789.1;Name=WP_000015789.1;Ontology_term=GO:0008152;gbkey=CDS;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459306.1;locus_tag=CFSAN001082_RS44455;product=amidohydrolase;protein_id=WP_000015789.1;transl_table=11
NZ_APAH01000432.1	RefSeq	gene	5735	8179	.	-	.	ID=gene-CFSAN001082_RS44460;Name=fadE;gbkey=Gene;gene=fadE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44460;old_locus_tag=CFSAN001082_20932
NZ_APAH01000432.1	Protein Homology	CDS	5735	8179	.	-	0	ID=cds-WP_023254845.1;Parent=gene-CFSAN001082_RS44460;Dbxref=GenBank:WP_023254845.1;Name=WP_023254845.1;Ontology_term=GO:0033539,GO:0003995,GO:0050660;gbkey=CDS;gene=fadE;go_function=acyl-CoA dehydrogenase activity|0003995||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=fatty acid beta-oxidation using acyl-CoA dehydrogenase|0033539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459307.1;locus_tag=CFSAN001082_RS44460;product=acyl-CoA dehydrogenase FadE;protein_id=WP_023254845.1;transl_table=11
NZ_APAH01000432.1	RefSeq	gene	8419	8962	.	+	.	ID=gene-CFSAN001082_RS44465;Name=lpcA;end_range=8962,.;gbkey=Gene;gene=lpcA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44465;old_locus_tag=CFSAN001082_20937;partial=true
NZ_APAH01000432.1	Protein Homology	CDS	8419	8962	.	+	0	ID=cds-WP_023254846.1;Parent=gene-CFSAN001082_RS44465;Dbxref=GenBank:WP_023254846.1;Name=WP_023254846.1;Ontology_term=GO:1901135,GO:0008968;end_range=8962,.;gbkey=CDS;gene=lpcA;go_function=D-sedoheptulose 7-phosphate isomerase activity|0008968||IEA;go_process=carbohydrate derivative metabolic process|1901135||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459308.1;locus_tag=CFSAN001082_RS44465;partial=true;product=D-sedoheptulose 7-phosphate isomerase;protein_id=WP_023254846.1;transl_table=11
##sequence-region NZ_APAH01000433.1 1 353
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000433.1	RefSeq	region	1	353	.	+	.	ID=NZ_APAH01000433.1:1..353;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000433.1	RefSeq	pseudogene	1	138	.	+	.	ID=gene-CFSAN001082_RS49135;Name=CFSAN001082_RS49135;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49135;old_locus_tag=CFSAN001082_20942;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000433.1	Protein Homology	CDS	1	138	.	+	0	ID=cds-CFSAN001082_RS49135;Parent=gene-CFSAN001082_RS49135;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000828176.1;locus_tag=CFSAN001082_RS49135;partial=true;product=sugar tyrosine-protein kinase;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000433.1	RefSeq	pseudogene	168	353	.	+	.	ID=gene-CFSAN001082_RS49300;Name=CFSAN001082_RS49300;end_range=353,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49300;partial=true;pseudo=true;start_range=.,168
NZ_APAH01000433.1	Protein Homology	CDS	168	353	.	+	0	ID=cds-CFSAN001082_RS49300;Parent=gene-CFSAN001082_RS49300;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=353,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418050.1;locus_tag=CFSAN001082_RS49300;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;start_range=.,168;transl_table=11
##sequence-region NZ_APAH01000434.1 1 735
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000434.1	RefSeq	region	1	735	.	+	.	ID=NZ_APAH01000434.1:1..735;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000434.1	RefSeq	gene	1	697	.	-	.	ID=gene-CFSAN001082_RS44475;Name=waaB;gbkey=Gene;gene=waaB;gene_biotype=protein_coding;gene_synonym=rfaB;locus_tag=CFSAN001082_RS44475;old_locus_tag=CFSAN001082_20947;partial=true;start_range=.,1
NZ_APAH01000434.1	Protein Homology	CDS	1	697	.	-	0	ID=cds-WP_024150334.1;Parent=gene-CFSAN001082_RS44475;Dbxref=GenBank:WP_024150334.1;Name=WP_024150334.1;gbkey=CDS;gene=waaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462619.1;locus_tag=CFSAN001082_RS44475;partial=true;product=lipopolysaccharide 1%2C6-galactosyltransferase;protein_id=WP_024150334.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000435.1 1 25109
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000435.1	RefSeq	region	1	25109	.	+	.	ID=NZ_APAH01000435.1:1..25109;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000435.1	RefSeq	gene	72	797	.	+	.	ID=gene-CFSAN001082_RS44480;Name=CFSAN001082_RS44480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44480;old_locus_tag=CFSAN001082_20952
NZ_APAH01000435.1	Protein Homology	CDS	72	797	.	+	0	ID=cds-WP_023207051.1;Parent=gene-CFSAN001082_RS44480;Dbxref=GenBank:WP_023207051.1;Name=WP_023207051.1;Ontology_term=GO:0006355;gbkey=CDS;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463406.1;locus_tag=CFSAN001082_RS44480;product=response regulator transcription factor;protein_id=WP_023207051.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	758	1432	.	+	.	ID=gene-CFSAN001082_RS44485;Name=bglJ;gbkey=Gene;gene=bglJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44485;old_locus_tag=CFSAN001082_20957
NZ_APAH01000435.1	Protein Homology	CDS	758	1432	.	+	0	ID=cds-WP_000431546.1;Parent=gene-CFSAN001082_RS44485;Dbxref=GenBank:WP_000431546.1;Name=WP_000431546.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=bglJ;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463407.3;locus_tag=CFSAN001082_RS44485;product=DNA-binding transcriptional activator BglJ;protein_id=WP_000431546.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	1483	1941	.	-	.	ID=gene-CFSAN001082_RS44490;Name=CFSAN001082_RS44490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44490;old_locus_tag=CFSAN001082_20962
NZ_APAH01000435.1	Protein Homology	CDS	1483	1941	.	-	0	ID=cds-WP_000058276.1;Parent=gene-CFSAN001082_RS44490;Dbxref=GenBank:WP_000058276.1;Name=WP_000058276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463408.1;locus_tag=CFSAN001082_RS44490;product=YbaK/EbsC family protein;protein_id=WP_000058276.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	2092	2880	.	-	.	ID=gene-CFSAN001082_RS44495;Name=fhuF;gbkey=Gene;gene=fhuF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44495;old_locus_tag=CFSAN001082_20967
NZ_APAH01000435.1	Protein Homology	CDS	2092	2880	.	-	0	ID=cds-WP_023207052.1;Parent=gene-CFSAN001082_RS44495;Dbxref=GenBank:WP_023207052.1;Name=WP_023207052.1;Ontology_term=GO:0051537;gbkey=CDS;gene=fhuF;go_function=2 iron%2C 2 sulfur cluster binding|0051537||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463409.1;locus_tag=CFSAN001082_RS44495;product=siderophore-iron reductase FhuF;protein_id=WP_023207052.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	3001	4065	.	-	.	ID=gene-CFSAN001082_RS44500;Name=CFSAN001082_RS44500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44500;old_locus_tag=CFSAN001082_20972
NZ_APAH01000435.1	Protein Homology	CDS	3001	4065	.	-	0	ID=cds-WP_023224107.1;Parent=gene-CFSAN001082_RS44500;Dbxref=GenBank:WP_023224107.1;Name=WP_023224107.1;Ontology_term=GO:0005525,GO:0046872,GO:0052621,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=GTP binding|0005525||IEA,metal ion binding|0046872||IEA,diguanylate cyclase activity|0052621||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463410.1;locus_tag=CFSAN001082_RS44500;product=GGDEF domain-containing protein;protein_id=WP_023224107.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	4316	4552	.	+	.	ID=gene-CFSAN001082_RS44505;Name=CFSAN001082_RS44505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44505;old_locus_tag=CFSAN001082_20977
NZ_APAH01000435.1	Protein Homology	CDS	4316	4552	.	+	0	ID=cds-WP_000941876.1;Parent=gene-CFSAN001082_RS44505;Dbxref=GenBank:WP_000941876.1;Name=WP_000941876.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463411.1;locus_tag=CFSAN001082_RS44505;product=DUF1435 domain-containing protein;protein_id=WP_000941876.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	4584	4670	.	-	.	ID=gene-CFSAN001082_RS44510;Name=CFSAN001082_RS44510;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS44510;old_locus_tag=CFSAN001082_t21084
NZ_APAH01000435.1	tRNAscan-SE	tRNA	4584	4670	.	-	.	ID=rna-CFSAN001082_RS44510;Parent=gene-CFSAN001082_RS44510;anticodon=(pos:complement(4634..4636));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44510;product=tRNA-Leu
NZ_APAH01000435.1	tRNAscan-SE	exon	4584	4670	.	-	.	ID=exon-CFSAN001082_RS44510-1;Parent=rna-CFSAN001082_RS44510;anticodon=(pos:complement(4634..4636));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44510;product=tRNA-Leu
NZ_APAH01000435.1	RefSeq	gene	4702	4788	.	-	.	ID=gene-CFSAN001082_RS44515;Name=CFSAN001082_RS44515;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS44515;old_locus_tag=CFSAN001082_t21086
NZ_APAH01000435.1	tRNAscan-SE	tRNA	4702	4788	.	-	.	ID=rna-CFSAN001082_RS44515;Parent=gene-CFSAN001082_RS44515;anticodon=(pos:complement(4752..4754));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44515;product=tRNA-Leu
NZ_APAH01000435.1	tRNAscan-SE	exon	4702	4788	.	-	.	ID=exon-CFSAN001082_RS44515-1;Parent=rna-CFSAN001082_RS44515;anticodon=(pos:complement(4752..4754));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44515;product=tRNA-Leu
NZ_APAH01000435.1	RefSeq	gene	4816	4902	.	-	.	ID=gene-CFSAN001082_RS44520;Name=CFSAN001082_RS44520;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS44520;old_locus_tag=CFSAN001082_t21088
NZ_APAH01000435.1	tRNAscan-SE	tRNA	4816	4902	.	-	.	ID=rna-CFSAN001082_RS44520;Parent=gene-CFSAN001082_RS44520;anticodon=(pos:complement(4866..4868));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44520;product=tRNA-Leu
NZ_APAH01000435.1	tRNAscan-SE	exon	4816	4902	.	-	.	ID=exon-CFSAN001082_RS44520-1;Parent=rna-CFSAN001082_RS44520;anticodon=(pos:complement(4866..4868));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44520;product=tRNA-Leu
NZ_APAH01000435.1	RefSeq	gene	5093	6121	.	-	.	ID=gene-CFSAN001082_RS44525;Name=rsmC;gbkey=Gene;gene=rsmC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44525;old_locus_tag=CFSAN001082_20982
NZ_APAH01000435.1	Protein Homology	CDS	5093	6121	.	-	0	ID=cds-WP_023137538.1;Parent=gene-CFSAN001082_RS44525;Dbxref=GenBank:WP_023137538.1;Name=WP_023137538.1;Ontology_term=GO:0006364,GO:0003676,GO:0008990;gbkey=CDS;gene=rsmC;go_function=nucleic acid binding|0003676||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463412.1;locus_tag=CFSAN001082_RS44525;product=16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC;protein_id=WP_023137538.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	6224	6661	.	+	.	ID=gene-CFSAN001082_RS44530;Name=CFSAN001082_RS44530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44530;old_locus_tag=CFSAN001082_20987
NZ_APAH01000435.1	Protein Homology	CDS	6224	6661	.	+	0	ID=cds-WP_000203993.1;Parent=gene-CFSAN001082_RS44530;Dbxref=GenBank:WP_000203993.1;Name=WP_000203993.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463413.1;locus_tag=CFSAN001082_RS44530;product=DNA polymerase III subunit psi;protein_id=WP_000203993.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	6606	7052	.	+	.	ID=gene-CFSAN001082_RS44535;Name=rimI;gbkey=Gene;gene=rimI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44535;old_locus_tag=CFSAN001082_20992
NZ_APAH01000435.1	Protein Homology	CDS	6606	7052	.	+	0	ID=cds-WP_001092435.1;Parent=gene-CFSAN001082_RS44535;Dbxref=GenBank:WP_001092435.1;Name=WP_001092435.1;Ontology_term=GO:0006474,GO:0008080;gbkey=CDS;gene=rimI;go_function=N-acetyltransferase activity|0008080||IEA;go_process=N-terminal protein amino acid acetylation|0006474||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463414.1;locus_tag=CFSAN001082_RS44535;product=ribosomal protein S18-alanine N-acetyltransferase;protein_id=WP_001092435.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	7074	7751	.	+	.	ID=gene-CFSAN001082_RS44540;Name=yjjG;gbkey=Gene;gene=yjjG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44540;old_locus_tag=CFSAN001082_20997
NZ_APAH01000435.1	Protein Homology	CDS	7074	7751	.	+	0	ID=cds-WP_001651448.1;Parent=gene-CFSAN001082_RS44540;Dbxref=GenBank:WP_001651448.1;Name=WP_001651448.1;Ontology_term=GO:0008253;gbkey=CDS;gene=yjjG;go_function=5'-nucleotidase activity|0008253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313359.1;locus_tag=CFSAN001082_RS44540;product=pyrimidine 5'-nucleotidase;protein_id=WP_001651448.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	7843	9432	.	+	.	ID=gene-CFSAN001082_RS44545;Name=prfC;gbkey=Gene;gene=prfC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44545;old_locus_tag=CFSAN001082_21002
NZ_APAH01000435.1	Protein Homology	CDS	7843	9432	.	+	0	ID=cds-WP_000175965.1;Parent=gene-CFSAN001082_RS44545;Dbxref=GenBank:WP_000175965.1;Name=WP_000175965.1;Ontology_term=GO:0006415,GO:0003747,GO:0003924,GO:0005525;gbkey=CDS;gene=prfC;go_function=translation release factor activity|0003747||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123889.1;locus_tag=CFSAN001082_RS44545;product=peptide chain release factor 3;protein_id=WP_000175965.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	9834	10451	.	+	.	ID=gene-CFSAN001082_RS44550;Name=osmY;gbkey=Gene;gene=osmY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44550;old_locus_tag=CFSAN001082_21007
NZ_APAH01000435.1	Protein Homology	CDS	9834	10451	.	+	0	ID=cds-WP_000178963.1;Parent=gene-CFSAN001082_RS44550;Dbxref=GenBank:WP_000178963.1;Name=WP_000178963.1;gbkey=CDS;gene=osmY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463417.1;locus_tag=CFSAN001082_RS44550;product=molecular chaperone OsmY;protein_id=WP_000178963.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	10580	10741	.	+	.	ID=gene-CFSAN001082_RS44555;Name=CFSAN001082_RS44555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44555;old_locus_tag=CFSAN001082_21012
NZ_APAH01000435.1	Protein Homology	CDS	10580	10741	.	+	0	ID=cds-WP_000490276.1;Parent=gene-CFSAN001082_RS44555;Dbxref=GenBank:WP_000490276.1;Name=WP_000490276.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002887716.1;locus_tag=CFSAN001082_RS44555;product=DUF1328 domain-containing protein;protein_id=WP_000490276.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	10865	11938	.	+	.	ID=gene-CFSAN001082_RS44560;Name=CFSAN001082_RS44560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44560;old_locus_tag=CFSAN001082_21017
NZ_APAH01000435.1	Protein Homology	CDS	10865	11938	.	+	0	ID=cds-WP_000531545.1;Parent=gene-CFSAN001082_RS44560;Dbxref=GenBank:WP_000531545.1;Name=WP_000531545.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463419.1;locus_tag=CFSAN001082_RS44560;product=patatin-like phospholipase family protein;protein_id=WP_000531545.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	11935	12708	.	+	.	ID=gene-CFSAN001082_RS44565;Name=CFSAN001082_RS44565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44565;old_locus_tag=CFSAN001082_21022
NZ_APAH01000435.1	Protein Homology	CDS	11935	12708	.	+	0	ID=cds-WP_000119012.1;Parent=gene-CFSAN001082_RS44565;Dbxref=GenBank:WP_000119012.1;Name=WP_000119012.1;Ontology_term=GO:0016788;gbkey=CDS;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463420.1;locus_tag=CFSAN001082_RS44565;product=metal-dependent hydrolase;protein_id=WP_000119012.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	12741	13604	.	-	.	ID=gene-CFSAN001082_RS44570;Name=CFSAN001082_RS44570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44570;old_locus_tag=CFSAN001082_21027
NZ_APAH01000435.1	Protein Homology	CDS	12741	13604	.	-	0	ID=cds-WP_023254849.1;Parent=gene-CFSAN001082_RS44570;Dbxref=GenBank:WP_023254849.1;Name=WP_023254849.1;Ontology_term=GO:0051539,GO:1904047;gbkey=CDS;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463421.1;locus_tag=CFSAN001082_RS44570;product=YjjW family glycine radical enzyme activase;protein_id=WP_023254849.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	13576	15126	.	-	.	ID=gene-CFSAN001082_RS44575;Name=CFSAN001082_RS44575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44575;old_locus_tag=CFSAN001082_21032
NZ_APAH01000435.1	Protein Homology	CDS	13576	15126	.	-	0	ID=cds-WP_001111671.1;Parent=gene-CFSAN001082_RS44575;Dbxref=GenBank:WP_001111671.1;Name=WP_001111671.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463422.1;locus_tag=CFSAN001082_RS44575;product=YjjI family glycine radical enzyme;protein_id=WP_001111671.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	15386	16165	.	+	.	ID=gene-CFSAN001082_RS44580;Name=deoC;gbkey=Gene;gene=deoC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44580;old_locus_tag=CFSAN001082_21037
NZ_APAH01000435.1	Protein Homology	CDS	15386	16165	.	+	0	ID=cds-WP_001519713.1;Parent=gene-CFSAN001082_RS44580;Dbxref=GenBank:WP_001519713.1;Name=WP_001519713.1;Ontology_term=GO:0009264,GO:0004139,GO:0005737;gbkey=CDS;gene=deoC;go_component=cytoplasm|0005737||IEA;go_function=deoxyribose-phosphate aldolase activity|0004139||IEA;go_process=deoxyribonucleotide catabolic process|0009264||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005097947.1;locus_tag=CFSAN001082_RS44580;product=deoxyribose-phosphate aldolase;protein_id=WP_001519713.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	16289	17611	.	+	.	ID=gene-CFSAN001082_RS44585;Name=deoA;gbkey=Gene;gene=deoA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44585;old_locus_tag=CFSAN001082_21042
NZ_APAH01000435.1	Protein Homology	CDS	16289	17611	.	+	0	ID=cds-WP_000477838.1;Parent=gene-CFSAN001082_RS44585;Dbxref=GenBank:WP_000477838.1;Name=WP_000477838.1;Ontology_term=GO:0006213,GO:0009032;gbkey=CDS;gene=deoA;go_function=thymidine phosphorylase activity|0009032||IEA;go_process=pyrimidine nucleoside metabolic process|0006213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123902.1;locus_tag=CFSAN001082_RS44585;product=thymidine phosphorylase;protein_id=WP_000477838.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	17663	18886	.	+	.	ID=gene-CFSAN001082_RS44590;Name=deoB;gbkey=Gene;gene=deoB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44590;old_locus_tag=CFSAN001082_21047
NZ_APAH01000435.1	Protein Homology	CDS	17663	18886	.	+	0	ID=cds-WP_000816454.1;Parent=gene-CFSAN001082_RS44590;Dbxref=GenBank:WP_000816454.1;Name=WP_000816454.1;Ontology_term=GO:0009117,GO:0043094,GO:0000287,GO:0008973,GO:0005737;gbkey=CDS;gene=deoB;go_component=cytoplasm|0005737||IEA;go_function=magnesium ion binding|0000287||IEA,phosphopentomutase activity|0008973||IEA;go_process=nucleotide metabolic process|0009117||IEA,metabolic compound salvage|0043094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463425.1;locus_tag=CFSAN001082_RS44590;product=phosphopentomutase;protein_id=WP_000816454.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	19096	19815	.	+	.	ID=gene-CFSAN001082_RS44595;Name=deoD;gbkey=Gene;gene=deoD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44595;old_locus_tag=CFSAN001082_21052
NZ_APAH01000435.1	Protein Homology	CDS	19096	19815	.	+	0	ID=cds-WP_000224864.1;Parent=gene-CFSAN001082_RS44595;Dbxref=GenBank:WP_000224864.1;Name=WP_000224864.1;Ontology_term=GO:0006139,GO:0004731;gbkey=CDS;gene=deoD;go_function=purine-nucleoside phosphorylase activity|0004731||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463426.1;locus_tag=CFSAN001082_RS44595;product=purine-nucleoside phosphorylase;protein_id=WP_000224864.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	19853	20425	.	-	.	ID=gene-CFSAN001082_RS44600;Name=CFSAN001082_RS44600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44600;old_locus_tag=CFSAN001082_21057
NZ_APAH01000435.1	Protein Homology	CDS	19853	20425	.	-	0	ID=cds-WP_017441766.1;Parent=gene-CFSAN001082_RS44600;Dbxref=GenBank:WP_017441766.1;Name=WP_017441766.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463427.1;locus_tag=CFSAN001082_RS44600;product=membrane protein;protein_id=WP_017441766.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	20422	22830	.	-	.	ID=gene-CFSAN001082_RS44605;Name=CFSAN001082_RS44605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44605;old_locus_tag=CFSAN001082_21062
NZ_APAH01000435.1	Protein Homology	CDS	20422	22830	.	-	0	ID=cds-WP_023254850.1;Parent=gene-CFSAN001082_RS44605;Dbxref=GenBank:WP_023254850.1;Name=WP_023254850.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463428.1;locus_tag=CFSAN001082_RS44605;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_023254850.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	22844	23551	.	-	.	ID=gene-CFSAN001082_RS44610;Name=stjC;gbkey=Gene;gene=stjC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44610;old_locus_tag=CFSAN001082_21067
NZ_APAH01000435.1	Protein Homology	CDS	22844	23551	.	-	0	ID=cds-WP_001112028.1;Parent=gene-CFSAN001082_RS44610;Dbxref=GenBank:WP_001112028.1;Name=WP_001112028.1;gbkey=CDS;gene=stjC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463429.1;locus_tag=CFSAN001082_RS44610;product=fimbrial biogenesis chaperone StjC;protein_id=WP_001112028.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	23629	24318	.	-	.	ID=gene-CFSAN001082_RS44615;Name=CFSAN001082_RS44615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44615;old_locus_tag=CFSAN001082_21072
NZ_APAH01000435.1	Protein Homology	CDS	23629	24318	.	-	0	ID=cds-WP_000722272.1;Parent=gene-CFSAN001082_RS44615;Dbxref=GenBank:WP_000722272.1;Name=WP_000722272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463430.1;locus_tag=CFSAN001082_RS44615;product=DUF1120 domain-containing protein;protein_id=WP_000722272.1;transl_table=11
NZ_APAH01000435.1	RefSeq	gene	24366	25055	.	-	.	ID=gene-CFSAN001082_RS44620;Name=CFSAN001082_RS44620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44620;old_locus_tag=CFSAN001082_21077
NZ_APAH01000435.1	Protein Homology	CDS	24366	25055	.	-	0	ID=cds-WP_023254851.1;Parent=gene-CFSAN001082_RS44620;Dbxref=GenBank:WP_023254851.1;Name=WP_023254851.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463431.1;locus_tag=CFSAN001082_RS44620;product=DUF1120 domain-containing protein;protein_id=WP_023254851.1;transl_table=11
##sequence-region NZ_APAH01000436.1 1 804
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000436.1	RefSeq	region	1	804	.	+	.	ID=NZ_APAH01000436.1:1..804;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000436.1	RefSeq	gene	1	804	.	-	.	ID=gene-CFSAN001082_RS44625;Name=waaO;end_range=804,.;gbkey=Gene;gene=waaO;gene_biotype=protein_coding;gene_synonym=rfaI;locus_tag=CFSAN001082_RS44625;old_locus_tag=CFSAN001082_21088;partial=true;start_range=.,1
NZ_APAH01000436.1	Protein Homology	CDS	1	804	.	-	2	ID=cds-WP_023254852.1;Parent=gene-CFSAN001082_RS44625;Dbxref=GenBank:WP_023254852.1;Name=WP_023254852.1;Ontology_term=GO:0009103,GO:0008918;end_range=804,.;gbkey=CDS;gene=waaO;go_function=lipopolysaccharide 3-alpha-galactosyltransferase activity|0008918||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462618.1;locus_tag=CFSAN001082_RS44625;partial=true;product=lipopolysaccharide 3-alpha-galactosyltransferase;protein_id=WP_023254852.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000437.1 1 47698
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000437.1	RefSeq	region	1	47698	.	+	.	ID=NZ_APAH01000437.1:1..47698;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000437.1	RefSeq	gene	1	560	.	+	.	ID=gene-CFSAN001082_RS44630;Name=CFSAN001082_RS44630;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS44630;old_locus_tag=CFSAN001082_r21319;partial=true;start_range=.,1
NZ_APAH01000437.1	cmsearch	rRNA	1	560	.	+	.	ID=rna-CFSAN001082_RS44630;Parent=gene-CFSAN001082_RS44630;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS44630;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_APAH01000437.1	cmsearch	exon	1	560	.	+	.	ID=exon-CFSAN001082_RS44630-1;Parent=rna-CFSAN001082_RS44630;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS44630;partial=true;product=23S ribosomal RNA;start_range=.,1
NZ_APAH01000437.1	RefSeq	gene	756	871	.	+	.	ID=gene-CFSAN001082_RS44635;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=CFSAN001082_RS44635;old_locus_tag=CFSAN001082_r21317
NZ_APAH01000437.1	cmsearch	rRNA	756	871	.	+	.	ID=rna-CFSAN001082_RS44635;Parent=gene-CFSAN001082_RS44635;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS44635;product=5S ribosomal RNA
NZ_APAH01000437.1	cmsearch	exon	756	871	.	+	.	ID=exon-CFSAN001082_RS44635-1;Parent=rna-CFSAN001082_RS44635;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS44635;product=5S ribosomal RNA
NZ_APAH01000437.1	RefSeq	gene	926	1002	.	+	.	ID=gene-CFSAN001082_RS44640;Name=CFSAN001082_RS44640;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS44640;old_locus_tag=CFSAN001082_t21305
NZ_APAH01000437.1	tRNAscan-SE	tRNA	926	1002	.	+	.	ID=rna-CFSAN001082_RS44640;Parent=gene-CFSAN001082_RS44640;anticodon=(pos:960..962);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44640;product=tRNA-Asp
NZ_APAH01000437.1	tRNAscan-SE	exon	926	1002	.	+	.	ID=exon-CFSAN001082_RS44640-1;Parent=rna-CFSAN001082_RS44640;anticodon=(pos:960..962);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44640;product=tRNA-Asp
NZ_APAH01000437.1	RefSeq	gene	1011	1086	.	+	.	ID=gene-CFSAN001082_RS44645;Name=CFSAN001082_RS44645;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS44645;old_locus_tag=CFSAN001082_t21307
NZ_APAH01000437.1	tRNAscan-SE	tRNA	1011	1086	.	+	.	ID=rna-CFSAN001082_RS44645;Parent=gene-CFSAN001082_RS44645;anticodon=(pos:1044..1046);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44645;product=tRNA-Trp
NZ_APAH01000437.1	tRNAscan-SE	exon	1011	1086	.	+	.	ID=exon-CFSAN001082_RS44645-1;Parent=rna-CFSAN001082_RS44645;anticodon=(pos:1044..1046);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44645;product=tRNA-Trp
NZ_APAH01000437.1	RefSeq	gene	1188	2036	.	-	.	ID=gene-CFSAN001082_RS44650;Name=hdfR;gbkey=Gene;gene=hdfR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44650;old_locus_tag=CFSAN001082_21093
NZ_APAH01000437.1	Protein Homology	CDS	1188	2036	.	-	0	ID=cds-WP_001541181.1;Parent=gene-CFSAN001082_RS44650;Dbxref=GenBank:WP_001541181.1;Name=WP_001541181.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=hdfR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462788.3;locus_tag=CFSAN001082_RS44650;product=HTH-type transcriptional regulator HdfR;protein_id=WP_001541181.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	2143	2481	.	+	.	ID=gene-CFSAN001082_RS44655;Name=maoP;gbkey=Gene;gene=maoP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44655;old_locus_tag=CFSAN001082_21098
NZ_APAH01000437.1	Protein Homology	CDS	2143	2481	.	+	0	ID=cds-WP_000840996.1;Parent=gene-CFSAN001082_RS44655;Dbxref=GenBank:WP_000840996.1;Name=WP_000840996.1;gbkey=CDS;gene=maoP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462789.1;locus_tag=CFSAN001082_RS44655;product=macrodomain Ori organization protein MaoP;protein_id=WP_000840996.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	2506	4026	.	-	.	ID=gene-CFSAN001082_RS44660;Name=CFSAN001082_RS44660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44660;old_locus_tag=CFSAN001082_21103
NZ_APAH01000437.1	Protein Homology	CDS	2506	4026	.	-	0	ID=cds-WP_023254853.1;Parent=gene-CFSAN001082_RS44660;Dbxref=GenBank:WP_023254853.1;Name=WP_023254853.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462790.1;locus_tag=CFSAN001082_RS44660;product=YifB family Mg chelatase-like AAA ATPase;protein_id=WP_023254853.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	4378	4476	.	+	.	ID=gene-CFSAN001082_RS0124015;Name=ilvL;gbkey=Gene;gene=ilvL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0124015
NZ_APAH01000437.1	Protein Homology	CDS	4378	4476	.	+	0	ID=cds-WP_001311244.1;Parent=gene-CFSAN001082_RS0124015;Dbxref=GenBank:WP_001311244.1;Name=WP_001311244.1;Ontology_term=GO:0031556;gbkey=CDS;gene=ilvL;go_process=transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312728.1;locus_tag=CFSAN001082_RS0124015;product=ilv operon leader peptide;protein_id=WP_001311244.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	4563	4613	.	+	.	ID=gene-CFSAN001082_RS48640;Name=ilvX;gbkey=Gene;gene=ilvX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48640
NZ_APAH01000437.1	Protein Homology	CDS	4563	4613	.	+	0	ID=cds-WP_192930503.1;Parent=gene-CFSAN001082_RS48640;Dbxref=GenBank:WP_192930503.1;Name=WP_192930503.1;gbkey=CDS;gene=ilvX;inference=COORDINATES: protein motif:HMM:NF038286.1;locus_tag=CFSAN001082_RS48640;product=peptide IlvX;protein_id=WP_192930503.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	4616	6262	.	+	.	ID=gene-CFSAN001082_RS44665;Name=ilvG;gbkey=Gene;gene=ilvG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44665;old_locus_tag=CFSAN001082_21113
NZ_APAH01000437.1	Protein Homology	CDS	4616	6262	.	+	0	ID=cds-WP_001012570.1;Parent=gene-CFSAN001082_RS44665;Dbxref=GenBank:WP_001012570.1;Name=WP_001012570.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvG;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001012636.1;locus_tag=CFSAN001082_RS44665;product=acetolactate synthase 2 catalytic subunit;protein_id=WP_001012570.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	6259	6522	.	+	.	ID=gene-CFSAN001082_RS44670;Name=ilvM;gbkey=Gene;gene=ilvM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44670;old_locus_tag=CFSAN001082_21118
NZ_APAH01000437.1	Protein Homology	CDS	6259	6522	.	+	0	ID=cds-WP_000983260.1;Parent=gene-CFSAN001082_RS44670;Dbxref=GenBank:WP_000983260.1;Name=WP_000983260.1;gbkey=CDS;gene=ilvM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312730.1;locus_tag=CFSAN001082_RS44670;product=acetolactate synthase 2 small subunit;protein_id=WP_000983260.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	6540	7469	.	+	.	ID=gene-CFSAN001082_RS44675;Name=ilvE;gbkey=Gene;gene=ilvE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44675;old_locus_tag=CFSAN001082_21123
NZ_APAH01000437.1	Protein Homology	CDS	6540	7469	.	+	0	ID=cds-WP_023254854.1;Parent=gene-CFSAN001082_RS44675;Dbxref=GenBank:WP_023254854.1;Name=WP_023254854.1;Ontology_term=GO:0009081,GO:0004084;gbkey=CDS;gene=ilvE;go_function=branched-chain-amino-acid transaminase activity|0004084||IEA;go_process=branched-chain amino acid metabolic process|0009081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462794.1;locus_tag=CFSAN001082_RS44675;product=branched-chain-amino-acid transaminase;protein_id=WP_023254854.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	7629	9479	.	+	.	ID=gene-CFSAN001082_RS44680;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44680;old_locus_tag=CFSAN001082_21128
NZ_APAH01000437.1	Protein Homology	CDS	7629	9479	.	+	0	ID=cds-WP_001127446.1;Parent=gene-CFSAN001082_RS44680;Dbxref=GenBank:WP_001127446.1;Name=WP_001127446.1;Ontology_term=GO:0009082,GO:0004160;gbkey=CDS;gene=ilvD;go_function=dihydroxy-acid dehydratase activity|0004160||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133366.1;locus_tag=CFSAN001082_RS44680;product=dihydroxy-acid dehydratase;protein_id=WP_001127446.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	9482	11026	.	+	.	ID=gene-CFSAN001082_RS44685;Name=ilvA;gbkey=Gene;gene=ilvA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44685;old_locus_tag=CFSAN001082_21133
NZ_APAH01000437.1	Protein Homology	CDS	9482	11026	.	+	0	ID=cds-WP_001518457.1;Parent=gene-CFSAN001082_RS44685;Dbxref=GenBank:WP_001518457.1;Name=WP_001518457.1;Ontology_term=GO:0009097,GO:0004794;gbkey=CDS;gene=ilvA;go_function=threonine deaminase activity|0004794||IEA;go_process=isoleucine biosynthetic process|0009097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462796.1;locus_tag=CFSAN001082_RS44685;product=threonine ammonia-lyase%2C biosynthetic;protein_id=WP_001518457.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	11309	11626	.	+	.	ID=gene-CFSAN001082_RS44690;Name=CFSAN001082_RS44690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44690;old_locus_tag=CFSAN001082_21138
NZ_APAH01000437.1	Protein Homology	CDS	11309	11626	.	+	0	ID=cds-WP_000535852.1;Parent=gene-CFSAN001082_RS44690;Dbxref=GenBank:WP_000535852.1;Name=WP_000535852.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462797.1;locus_tag=CFSAN001082_RS44690;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_000535852.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	11623	11964	.	+	.	ID=gene-CFSAN001082_RS44695;Name=CFSAN001082_RS44695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44695;old_locus_tag=CFSAN001082_21143
NZ_APAH01000437.1	Protein Homology	CDS	11623	11964	.	+	0	ID=cds-WP_000560824.1;Parent=gene-CFSAN001082_RS44695;Dbxref=GenBank:WP_000560824.1;Name=WP_000560824.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462798.1;locus_tag=CFSAN001082_RS44695;product=helix-turn-helix domain-containing protein;protein_id=WP_000560824.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	11967	12854	.	-	.	ID=gene-CFSAN001082_RS44700;Name=ilvY;gbkey=Gene;gene=ilvY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44700;old_locus_tag=CFSAN001082_21148
NZ_APAH01000437.1	Protein Homology	CDS	11967	12854	.	-	0	ID=cds-WP_000365798.1;Parent=gene-CFSAN001082_RS44700;Dbxref=GenBank:WP_000365798.1;Name=WP_000365798.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ilvY;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462799.1;locus_tag=CFSAN001082_RS44700;product=HTH-type transcriptional activator IlvY;protein_id=WP_000365798.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	13018	14493	.	+	.	ID=gene-CFSAN001082_RS44705;Name=ilvC;gbkey=Gene;gene=ilvC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44705;old_locus_tag=CFSAN001082_21153
NZ_APAH01000437.1	Protein Homology	CDS	13018	14493	.	+	0	ID=cds-WP_000024943.1;Parent=gene-CFSAN001082_RS44705;Dbxref=GenBank:WP_000024943.1;Name=WP_000024943.1;Ontology_term=GO:0009082,GO:0004455;gbkey=CDS;gene=ilvC;go_function=ketol-acid reductoisomerase activity|0004455||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133363.1;locus_tag=CFSAN001082_RS44705;product=ketol-acid reductoisomerase;protein_id=WP_000024943.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	14585	14866	.	-	.	ID=gene-CFSAN001082_RS44710;Name=ppiC;gbkey=Gene;gene=ppiC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44710;old_locus_tag=CFSAN001082_21158
NZ_APAH01000437.1	Protein Homology	CDS	14585	14866	.	-	0	ID=cds-WP_001096806.1;Parent=gene-CFSAN001082_RS44710;Dbxref=GenBank:WP_001096806.1;Name=WP_001096806.1;gbkey=CDS;gene=ppiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462801.1;locus_tag=CFSAN001082_RS44710;product=peptidylprolyl isomerase PpiC;protein_id=WP_001096806.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	15060	15761	.	+	.	ID=gene-CFSAN001082_RS0124020;Name=CFSAN001082_RS0124020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0124020
NZ_APAH01000437.1	Protein Homology	CDS	15060	15761	.	+	0	ID=cds-WP_001024340.1;Parent=gene-CFSAN001082_RS0124020;Dbxref=GenBank:WP_001024340.1;Name=WP_001024340.1;Ontology_term=GO:0003677,GO:0030552;gbkey=CDS;go_function=DNA binding|0003677||IEA,cAMP binding|0030552||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017442089.1;locus_tag=CFSAN001082_RS0124020;product=Crp/Fnr family transcriptional regulator;protein_id=WP_001024340.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	15790	16533	.	+	.	ID=gene-CFSAN001082_RS44715;Name=CFSAN001082_RS44715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44715;old_locus_tag=CFSAN001082_21168
NZ_APAH01000437.1	Protein Homology	CDS	15790	16533	.	+	0	ID=cds-WP_001182428.1;Parent=gene-CFSAN001082_RS44715;Dbxref=GenBank:WP_001182428.1;Name=WP_001182428.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001182423.1;locus_tag=CFSAN001082_RS44715;product=nucleoside phosphorylase;protein_id=WP_001182428.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	16533	17261	.	+	.	ID=gene-CFSAN001082_RS44720;Name=pnuC;gbkey=Gene;gene=pnuC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44720;old_locus_tag=CFSAN001082_21173
NZ_APAH01000437.1	Protein Homology	CDS	16533	17261	.	+	0	ID=cds-WP_020838007.1;Parent=gene-CFSAN001082_RS44720;Dbxref=GenBank:WP_020838007.1;Name=WP_020838007.1;Ontology_term=GO:0015890,GO:0015663,GO:0016020;gbkey=CDS;gene=pnuC;go_component=membrane|0016020||IEA;go_function=nicotinamide mononucleotide transmembrane transporter activity|0015663||IEA;go_process=nicotinamide mononucleotide transport|0015890||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016506088.1;locus_tag=CFSAN001082_RS44720;product=nicotinamide riboside transporter PnuC;protein_id=WP_020838007.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	17361	19385	.	+	.	ID=gene-CFSAN001082_RS44725;Name=rep;gbkey=Gene;gene=rep;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44725;old_locus_tag=CFSAN001082_21178
NZ_APAH01000437.1	Protein Homology	CDS	17361	19385	.	+	0	ID=cds-WP_001238842.1;Parent=gene-CFSAN001082_RS44725;Dbxref=GenBank:WP_001238842.1;Name=WP_001238842.1;Ontology_term=GO:0006260,GO:0003678;gbkey=CDS;gene=rep;go_function=DNA helicase activity|0003678||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462803.1;locus_tag=CFSAN001082_RS44725;product=DNA helicase Rep;protein_id=WP_001238842.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	19425	20906	.	-	.	ID=gene-CFSAN001082_RS44730;Name=gppA;gbkey=Gene;gene=gppA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44730;old_locus_tag=CFSAN001082_21183
NZ_APAH01000437.1	Protein Homology	CDS	19425	20906	.	-	0	ID=cds-WP_001089447.1;Parent=gene-CFSAN001082_RS44730;Dbxref=GenBank:WP_001089447.1;Name=WP_001089447.1;Ontology_term=GO:0015974,GO:0008894;gbkey=CDS;gene=gppA;go_function=guanosine-5'-triphosphate%2C3'-diphosphate diphosphatase activity|0008894||IEA;go_process=guanosine pentaphosphate catabolic process|0015974||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462804.1;locus_tag=CFSAN001082_RS44730;product=guanosine-5'-triphosphate%2C3'-diphosphate diphosphatase;protein_id=WP_001089447.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	21025	22290	.	-	.	ID=gene-CFSAN001082_RS44735;Name=rhlB;gbkey=Gene;gene=rhlB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44735;old_locus_tag=CFSAN001082_21188
NZ_APAH01000437.1	Protein Homology	CDS	21025	22290	.	-	0	ID=cds-WP_000047525.1;Parent=gene-CFSAN001082_RS44735;Dbxref=GenBank:WP_000047525.1;Name=WP_000047525.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=rhlB;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462805.1;locus_tag=CFSAN001082_RS44735;product=ATP-dependent RNA helicase RhlB;protein_id=WP_000047525.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	22434	22763	.	+	.	ID=gene-CFSAN001082_RS44740;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44740;old_locus_tag=CFSAN001082_21193
NZ_APAH01000437.1	Protein Homology	CDS	22434	22763	.	+	0	ID=cds-WP_001280776.1;Parent=gene-CFSAN001082_RS44740;Dbxref=GenBank:WP_001280776.1;Name=WP_001280776.1;Ontology_term=GO:0006662,GO:0015035;gbkey=CDS;gene=trxA;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=glycerol ether metabolic process|0006662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017375425.1;locus_tag=CFSAN001082_RS44740;product=thioredoxin TrxA;protein_id=WP_001280776.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	23011	23094	.	+	.	ID=gene-CFSAN001082_RS49005;Name=CFSAN001082_RS49005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49005
NZ_APAH01000437.1	Protein Homology	CDS	23011	23094	.	+	0	ID=cds-WP_134820045.1;Parent=gene-CFSAN001082_RS49005;Dbxref=GenBank:WP_134820045.1;Name=WP_134820045.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312742.1;locus_tag=CFSAN001082_RS49005;product=rho operon leader peptide;protein_id=WP_134820045.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	23182	24441	.	+	.	ID=gene-CFSAN001082_RS44745;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44745;old_locus_tag=CFSAN001082_21198
NZ_APAH01000437.1	Protein Homology	CDS	23182	24441	.	+	0	ID=cds-WP_001054532.1;Parent=gene-CFSAN001082_RS44745;Dbxref=GenBank:WP_001054532.1;Name=WP_001054532.1;Ontology_term=GO:0006353,GO:0003723,GO:0005524,GO:0008186;gbkey=CDS;gene=rho;go_function=RNA binding|0003723||IEA,ATP binding|0005524||IEA,ATP-dependent activity%2C acting on RNA|0008186||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017492510.1;locus_tag=CFSAN001082_RS44745;product=transcription termination factor Rho;protein_id=WP_001054532.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	24681	25784	.	+	.	ID=gene-CFSAN001082_RS44755;Name=wecA;gbkey=Gene;gene=wecA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44755;old_locus_tag=CFSAN001082_21208
NZ_APAH01000437.1	Protein Homology	CDS	24681	25784	.	+	0	ID=cds-WP_001050948.1;Parent=gene-CFSAN001082_RS44755;Dbxref=GenBank:WP_001050948.1;Name=WP_001050948.1;Ontology_term=GO:0009103,GO:0009246,GO:0000287,GO:0016780,GO:0030145,GO:0036380,GO:0009276,GO:0016020;gbkey=CDS;gene=wecA;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA,membrane|0016020||IEA;go_function=magnesium ion binding|0000287||IEA,phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA,manganese ion binding|0030145||IEA,UDP-N-acetylglucosamine-undecaprenyl-phosphate N-acetylglucosaminephosphotransferase activity|0036380||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA,enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418231.1;locus_tag=CFSAN001082_RS44755;product=UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase;protein_id=WP_001050948.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	25796	26842	.	+	.	ID=gene-CFSAN001082_RS44760;Name=wzzE;gbkey=Gene;gene=wzzE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44760;old_locus_tag=CFSAN001082_21213
NZ_APAH01000437.1	Protein Homology	CDS	25796	26842	.	+	0	ID=cds-WP_000193420.1;Parent=gene-CFSAN001082_RS44760;Dbxref=GenBank:WP_000193420.1;Name=WP_000193420.1;Ontology_term=GO:0009103,GO:0009246,GO:0016020;gbkey=CDS;gene=wzzE;go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA,enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462809.1;locus_tag=CFSAN001082_RS44760;product=ECA polysaccharide chain length modulation protein;protein_id=WP_000193420.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	26898	28028	.	+	.	ID=gene-CFSAN001082_RS44765;Name=wecB;gbkey=Gene;gene=wecB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44765;old_locus_tag=CFSAN001082_21218
NZ_APAH01000437.1	Protein Homology	CDS	26898	28028	.	+	0	ID=cds-WP_000866685.1;Parent=gene-CFSAN001082_RS44765;Dbxref=GenBank:WP_000866685.1;Name=WP_000866685.1;Ontology_term=GO:0008761;gbkey=CDS;gene=wecB;go_function=UDP-N-acetylglucosamine 2-epimerase activity|0008761||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462810.1;locus_tag=CFSAN001082_RS44765;product=non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase;protein_id=WP_000866685.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	28025	29287	.	+	.	ID=gene-CFSAN001082_RS44770;Name=wecC;gbkey=Gene;gene=wecC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44770;old_locus_tag=CFSAN001082_21223
NZ_APAH01000437.1	Protein Homology	CDS	28025	29287	.	+	0	ID=cds-WP_000011236.1;Parent=gene-CFSAN001082_RS44770;Dbxref=GenBank:WP_000011236.1;Name=WP_000011236.1;Ontology_term=GO:0009246,GO:0051287,GO:0089714;gbkey=CDS;gene=wecC;go_function=NAD binding|0051287||IEA,UDP-N-acetyl-D-mannosamine dehydrogenase activity|0089714||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462811.1;locus_tag=CFSAN001082_RS44770;product=UDP-N-acetyl-D-mannosamine dehydrogenase;protein_id=WP_000011236.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	29287	30354	.	+	.	ID=gene-CFSAN001082_RS44775;Name=rffG;gbkey=Gene;gene=rffG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44775;old_locus_tag=CFSAN001082_21228
NZ_APAH01000437.1	Protein Homology	CDS	29287	30354	.	+	0	ID=cds-WP_000822143.1;Parent=gene-CFSAN001082_RS44775;Dbxref=GenBank:WP_000822143.1;Name=WP_000822143.1;Ontology_term=GO:0009225,GO:0008460;gbkey=CDS;gene=rffG;go_function=dTDP-glucose 4%2C6-dehydratase activity|0008460||IEA;go_process=nucleotide-sugar metabolic process|0009225||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462812.1;locus_tag=CFSAN001082_RS44775;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_000822143.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	30387	31268	.	+	.	ID=gene-CFSAN001082_RS44780;Name=rfbA;gbkey=Gene;gene=rfbA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44780;old_locus_tag=CFSAN001082_21233
NZ_APAH01000437.1	Protein Homology	CDS	30387	31268	.	+	0	ID=cds-WP_000676077.1;Parent=gene-CFSAN001082_RS44780;Dbxref=GenBank:WP_000676077.1;Name=WP_000676077.1;Ontology_term=GO:0000271,GO:0019305,GO:0008879;gbkey=CDS;gene=rfbA;go_function=glucose-1-phosphate thymidylyltransferase activity|0008879||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133346.1;locus_tag=CFSAN001082_RS44780;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_000676077.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	31246	31923	.	+	.	ID=gene-CFSAN001082_RS44785;Name=rffC;gbkey=Gene;gene=rffC;gene_biotype=protein_coding;gene_synonym=wecD;locus_tag=CFSAN001082_RS44785;old_locus_tag=CFSAN001082_21238
NZ_APAH01000437.1	Protein Homology	CDS	31246	31923	.	+	0	ID=cds-WP_017442082.1;Parent=gene-CFSAN001082_RS44785;Dbxref=GenBank:WP_017442082.1;Name=WP_017442082.1;Ontology_term=GO:0008080;gbkey=CDS;gene=rffC;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026256.2;locus_tag=CFSAN001082_RS44785;product=dTDP-4-amino-4%2C6-dideoxy-D-galactose acyltransferase;protein_id=WP_017442082.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	31928	33058	.	+	.	ID=gene-CFSAN001082_RS44790;Name=rffA;gbkey=Gene;gene=rffA;gene_biotype=protein_coding;gene_synonym=fcnA,wecE;locus_tag=CFSAN001082_RS44790;old_locus_tag=CFSAN001082_21243
NZ_APAH01000437.1	Protein Homology	CDS	31928	33058	.	+	0	ID=cds-WP_023254856.1;Parent=gene-CFSAN001082_RS44790;Dbxref=GenBank:WP_023254856.1;Name=WP_023254856.1;Ontology_term=GO:0009246,GO:0019180;gbkey=CDS;gene=rffA;go_function=dTDP-4-amino-4%2C6-dideoxygalactose transaminase activity|0019180||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462815.1;locus_tag=CFSAN001082_RS44790;product=dTDP-4-amino-4%2C6-dideoxygalactose transaminase;protein_id=WP_023254856.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	33060	34310	.	+	.	ID=gene-CFSAN001082_RS44795;Name=wzxE;gbkey=Gene;gene=wzxE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44795;old_locus_tag=CFSAN001082_21248
NZ_APAH01000437.1	Protein Homology	CDS	33060	34310	.	+	0	ID=cds-WP_023254857.1;Parent=gene-CFSAN001082_RS44795;Dbxref=GenBank:WP_023254857.1;Name=WP_023254857.1;Ontology_term=GO:0009246,GO:0016020;gbkey=CDS;gene=wzxE;go_component=membrane|0016020||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462816.1;locus_tag=CFSAN001082_RS44795;product=lipid III flippase WzxE;protein_id=WP_023254857.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	34307	35386	.	+	.	ID=gene-CFSAN001082_RS44800;Name=CFSAN001082_RS44800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44800;old_locus_tag=CFSAN001082_21253
NZ_APAH01000437.1	Protein Homology	CDS	34307	35386	.	+	0	ID=cds-WP_000217174.1;Parent=gene-CFSAN001082_RS44800;Dbxref=GenBank:WP_000217174.1;Name=WP_000217174.1;Ontology_term=GO:0036065,GO:0008417;gbkey=CDS;go_function=fucosyltransferase activity|0008417||IEA;go_process=fucosylation|0036065||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462817.1;locus_tag=CFSAN001082_RS44800;product=TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase;protein_id=WP_000217174.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	35383	36741	.	+	.	ID=gene-CFSAN001082_RS44805;Name=wzyE;gbkey=Gene;gene=wzyE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44805;old_locus_tag=CFSAN001082_21258
NZ_APAH01000437.1	Protein Homology	CDS	35383	36741	.	+	0	ID=cds-WP_000055605.1;Parent=gene-CFSAN001082_RS44805;Dbxref=GenBank:WP_000055605.1;Name=WP_000055605.1;Ontology_term=GO:0009246,GO:0016020;gbkey=CDS;gene=wzyE;go_component=membrane|0016020||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462818.1;locus_tag=CFSAN001082_RS44805;product=ECA oligosaccharide polymerase;protein_id=WP_000055605.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	36738	37478	.	+	.	ID=gene-CFSAN001082_RS44810;Name=wecG;gbkey=Gene;gene=wecG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44810;old_locus_tag=CFSAN001082_21263
NZ_APAH01000437.1	Protein Homology	CDS	36738	37478	.	+	0	ID=cds-WP_000183617.1;Parent=gene-CFSAN001082_RS44810;Dbxref=GenBank:WP_000183617.1;Name=WP_000183617.1;Ontology_term=GO:0047241;gbkey=CDS;gene=wecG;go_function=lipopolysaccharide N-acetylmannosaminouronosyltransferase activity|0047241||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462819.1;locus_tag=CFSAN001082_RS44810;product=lipopolysaccharide N-acetylmannosaminouronosyltransferase;protein_id=WP_000183617.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	37685	39070	.	+	.	ID=gene-CFSAN001082_RS44815;Name=thrP;gbkey=Gene;gene=thrP;gene_biotype=protein_coding;gene_synonym=yifK;locus_tag=CFSAN001082_RS44815;old_locus_tag=CFSAN001082_21268
NZ_APAH01000437.1	Protein Homology	CDS	37685	39070	.	+	0	ID=cds-WP_000818378.1;Parent=gene-CFSAN001082_RS44815;Dbxref=GenBank:WP_000818378.1;Name=WP_000818378.1;Ontology_term=GO:0015194,GO:0015195;gbkey=CDS;gene=thrP;go_function=L-serine transmembrane transporter activity|0015194||IEA,L-threonine transmembrane transporter activity|0015195||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462820.1;locus_tag=CFSAN001082_RS44815;product=bifunctional threonine/serine APC transporter ThrP;protein_id=WP_000818378.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	39173	39249	.	+	.	ID=gene-CFSAN001082_RS44820;Name=CFSAN001082_RS44820;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS44820;old_locus_tag=CFSAN001082_t21309
NZ_APAH01000437.1	tRNAscan-SE	tRNA	39173	39249	.	+	.	ID=rna-CFSAN001082_RS44820;Parent=gene-CFSAN001082_RS44820;anticodon=(pos:39207..39209);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44820;product=tRNA-Arg
NZ_APAH01000437.1	tRNAscan-SE	exon	39173	39249	.	+	.	ID=exon-CFSAN001082_RS44820-1;Parent=rna-CFSAN001082_RS44820;anticodon=(pos:39207..39209);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44820;product=tRNA-Arg
NZ_APAH01000437.1	RefSeq	gene	39304	39379	.	+	.	ID=gene-CFSAN001082_RS44825;Name=CFSAN001082_RS44825;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS44825;old_locus_tag=CFSAN001082_t21311
NZ_APAH01000437.1	tRNAscan-SE	tRNA	39304	39379	.	+	.	ID=rna-CFSAN001082_RS44825;Parent=gene-CFSAN001082_RS44825;anticodon=(pos:39337..39339);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44825;product=tRNA-His
NZ_APAH01000437.1	tRNAscan-SE	exon	39304	39379	.	+	.	ID=exon-CFSAN001082_RS44825-1;Parent=rna-CFSAN001082_RS44825;anticodon=(pos:39337..39339);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44825;product=tRNA-His
NZ_APAH01000437.1	RefSeq	gene	39400	39486	.	+	.	ID=gene-CFSAN001082_RS44830;Name=CFSAN001082_RS44830;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS44830;old_locus_tag=CFSAN001082_t21313
NZ_APAH01000437.1	tRNAscan-SE	tRNA	39400	39486	.	+	.	ID=rna-CFSAN001082_RS44830;Parent=gene-CFSAN001082_RS44830;anticodon=(pos:39434..39436);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44830;product=tRNA-Leu
NZ_APAH01000437.1	tRNAscan-SE	exon	39400	39486	.	+	.	ID=exon-CFSAN001082_RS44830-1;Parent=rna-CFSAN001082_RS44830;anticodon=(pos:39434..39436);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44830;product=tRNA-Leu
NZ_APAH01000437.1	RefSeq	gene	39529	39605	.	+	.	ID=gene-CFSAN001082_RS44835;Name=CFSAN001082_RS44835;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS44835;old_locus_tag=CFSAN001082_t21315
NZ_APAH01000437.1	tRNAscan-SE	tRNA	39529	39605	.	+	.	ID=rna-CFSAN001082_RS44835;Parent=gene-CFSAN001082_RS44835;anticodon=(pos:39563..39565);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44835;product=tRNA-Pro
NZ_APAH01000437.1	tRNAscan-SE	exon	39529	39605	.	+	.	ID=exon-CFSAN001082_RS44835-1;Parent=rna-CFSAN001082_RS44835;anticodon=(pos:39563..39565);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS44835;product=tRNA-Pro
NZ_APAH01000437.1	RefSeq	gene	40186	41382	.	-	.	ID=gene-CFSAN001082_RS44840;Name=hemY;gbkey=Gene;gene=hemY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44840;old_locus_tag=CFSAN001082_21273
NZ_APAH01000437.1	Protein Homology	CDS	40186	41382	.	-	0	ID=cds-WP_001546072.1;Parent=gene-CFSAN001082_RS44840;Dbxref=GenBank:WP_001546072.1;Name=WP_001546072.1;Ontology_term=GO:0042168,GO:0005515,GO:0016020;gbkey=CDS;gene=hemY;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA;go_process=heme metabolic process|0042168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312759.1;locus_tag=CFSAN001082_RS44840;product=protoheme IX biogenesis protein HemY;protein_id=WP_001546072.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	41385	42554	.	-	.	ID=gene-CFSAN001082_RS44845;Name=hemX;gbkey=Gene;gene=hemX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44845;old_locus_tag=CFSAN001082_21278
NZ_APAH01000437.1	Protein Homology	CDS	41385	42554	.	-	0	ID=cds-WP_000138955.1;Parent=gene-CFSAN001082_RS44845;Dbxref=GenBank:WP_000138955.1;Name=WP_000138955.1;gbkey=CDS;gene=hemX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462822.1;locus_tag=CFSAN001082_RS44845;product=uroporphyrinogen-III C-methyltransferase;protein_id=WP_000138955.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	42576	43316	.	-	.	ID=gene-CFSAN001082_RS44850;Name=hemD;gbkey=Gene;gene=hemD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44850;old_locus_tag=CFSAN001082_21283
NZ_APAH01000437.1	Protein Homology	CDS	42576	43316	.	-	0	ID=cds-WP_000025491.1;Parent=gene-CFSAN001082_RS44850;Dbxref=GenBank:WP_000025491.1;Name=WP_000025491.1;Ontology_term=GO:0006780,GO:0004852;gbkey=CDS;gene=hemD;go_function=uroporphyrinogen-III synthase activity|0004852||IEA;go_process=uroporphyrinogen III biosynthetic process|0006780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462823.1;locus_tag=CFSAN001082_RS44850;product=uroporphyrinogen-III synthase;protein_id=WP_000025491.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	43313	44254	.	-	.	ID=gene-CFSAN001082_RS44855;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44855;old_locus_tag=CFSAN001082_21288
NZ_APAH01000437.1	Protein Homology	CDS	43313	44254	.	-	0	ID=cds-WP_023254858.1;Parent=gene-CFSAN001082_RS44855;Dbxref=GenBank:WP_023254858.1;Name=WP_023254858.1;Ontology_term=GO:0033014,GO:0004418;gbkey=CDS;gene=hemC;go_function=hydroxymethylbilane synthase activity|0004418||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026260.1;locus_tag=CFSAN001082_RS44855;product=hydroxymethylbilane synthase;protein_id=WP_023254858.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	44631	47177	.	+	.	ID=gene-CFSAN001082_RS44860;Name=cyaA;gbkey=Gene;gene=cyaA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44860;old_locus_tag=CFSAN001082_21293
NZ_APAH01000437.1	Protein Homology	CDS	44631	47177	.	+	0	ID=cds-WP_000281718.1;Parent=gene-CFSAN001082_RS44860;Dbxref=GenBank:WP_000281718.1;Name=WP_000281718.1;Ontology_term=GO:0006171,GO:0004016;gbkey=CDS;gene=cyaA;go_function=adenylate cyclase activity|0004016||IEA;go_process=cAMP biosynthetic process|0006171||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462825.1;locus_tag=CFSAN001082_RS44860;product=class I adenylate cyclase;protein_id=WP_000281718.1;transl_table=11
NZ_APAH01000437.1	RefSeq	gene	47285	47641	.	+	.	ID=gene-CFSAN001082_RS44865;Name=CFSAN001082_RS44865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44865;old_locus_tag=CFSAN001082_21298
NZ_APAH01000437.1	Protein Homology	CDS	47285	47641	.	+	0	ID=cds-WP_000752580.1;Parent=gene-CFSAN001082_RS44865;Dbxref=GenBank:WP_000752580.1;Name=WP_000752580.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462826.1;locus_tag=CFSAN001082_RS44865;product=hypothetical protein;protein_id=WP_000752580.1;transl_table=11
##sequence-region NZ_APAH01000438.1 1 2035
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000438.1	RefSeq	region	1	2035	.	+	.	ID=NZ_APAH01000438.1:1..2035;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000438.1	RefSeq	gene	56	1462	.	-	.	ID=gene-CFSAN001082_RS44870;Name=gndA;gbkey=Gene;gene=gndA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44870;old_locus_tag=CFSAN001082_21319
NZ_APAH01000438.1	Protein Homology	CDS	56	1462	.	-	0	ID=cds-WP_000043533.1;Parent=gene-CFSAN001082_RS44870;Dbxref=GenBank:WP_000043533.1;Name=WP_000043533.1;Ontology_term=GO:0006098,GO:0004616,GO:0050661;gbkey=CDS;gene=gndA;go_function=phosphogluconate dehydrogenase (decarboxylating) activity|0004616||IEA,NADP binding|0050661||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461026.1;locus_tag=CFSAN001082_RS44870;product=NADP-dependent phosphogluconate dehydrogenase;protein_id=WP_000043533.1;transl_table=11
NZ_APAH01000438.1	RefSeq	gene	1592	2035	.	-	.	ID=gene-CFSAN001082_RS44875;Name=CFSAN001082_RS44875;end_range=2035,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44875;old_locus_tag=CFSAN001082_21324;partial=true
NZ_APAH01000438.1	Protein Homology	CDS	1592	2035	.	-	0	ID=cds-WP_023254859.1;Parent=gene-CFSAN001082_RS44875;Dbxref=GenBank:WP_023254859.1;Name=WP_023254859.1;Ontology_term=GO:0005975,GO:0043413,GO:0008417,GO:0016020;end_range=2035,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=fucosyltransferase activity|0008417||IEA;go_process=carbohydrate metabolic process|0005975||IEA,macromolecule glycosylation|0043413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000286640.1;locus_tag=CFSAN001082_RS44875;partial=true;product=alpha-1%2C2-fucosyltransferase;protein_id=WP_023254859.1;transl_table=11
##sequence-region NZ_APAH01000439.1 1 6986
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000439.1	RefSeq	region	1	6986	.	+	.	ID=NZ_APAH01000439.1:1..6986;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000439.1	RefSeq	gene	105	1343	.	+	.	ID=gene-CFSAN001082_RS44880;Name=CFSAN001082_RS44880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44880;old_locus_tag=CFSAN001082_21329
NZ_APAH01000439.1	Protein Homology	CDS	105	1343	.	+	0	ID=cds-WP_077910695.1;Parent=gene-CFSAN001082_RS44880;Dbxref=GenBank:WP_077910695.1;Name=WP_077910695.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459323.3;locus_tag=CFSAN001082_RS44880;product=MFS transporter;protein_id=WP_077910695.1;transl_table=11
NZ_APAH01000439.1	RefSeq	gene	1475	2896	.	+	.	ID=gene-CFSAN001082_RS44885;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44885;old_locus_tag=CFSAN001082_21334
NZ_APAH01000439.1	Protein Homology	CDS	1475	2896	.	+	0	ID=cds-WP_023254861.1;Parent=gene-CFSAN001082_RS44885;Dbxref=GenBank:WP_023254861.1;Name=WP_023254861.1;Ontology_term=GO:0009098,GO:0003861,GO:0051539,GO:0009316;gbkey=CDS;gene=leuC;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459324.1;locus_tag=CFSAN001082_RS44885;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_023254861.1;transl_table=11
NZ_APAH01000439.1	RefSeq	gene	2898	3524	.	+	.	ID=gene-CFSAN001082_RS44890;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44890;old_locus_tag=CFSAN001082_21339
NZ_APAH01000439.1	Protein Homology	CDS	2898	3524	.	+	0	ID=cds-WP_000379343.1;Parent=gene-CFSAN001082_RS44890;Dbxref=GenBank:WP_000379343.1;Name=WP_000379343.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuD;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459325.1;locus_tag=CFSAN001082_RS44890;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_000379343.1;transl_table=11
NZ_APAH01000439.1	RefSeq	gene	3539	4417	.	+	.	ID=gene-CFSAN001082_RS44895;Name=CFSAN001082_RS44895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44895;old_locus_tag=CFSAN001082_21344
NZ_APAH01000439.1	Protein Homology	CDS	3539	4417	.	+	0	ID=cds-WP_000780210.1;Parent=gene-CFSAN001082_RS44895;Dbxref=GenBank:WP_000780210.1;Name=WP_000780210.1;Ontology_term=GO:0003824,GO:0016787;gbkey=CDS;go_function=catalytic activity|0003824||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459326.1;locus_tag=CFSAN001082_RS44895;product=fumarylacetoacetate hydrolase family protein;protein_id=WP_000780210.1;transl_table=11
NZ_APAH01000439.1	RefSeq	gene	4417	5331	.	+	.	ID=gene-CFSAN001082_RS44900;Name=CFSAN001082_RS44900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44900;old_locus_tag=CFSAN001082_21349
NZ_APAH01000439.1	Protein Homology	CDS	4417	5331	.	+	0	ID=cds-WP_000105592.1;Parent=gene-CFSAN001082_RS44900;Dbxref=GenBank:WP_000105592.1;Name=WP_000105592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459327.1;locus_tag=CFSAN001082_RS44900;product=alpha/beta fold hydrolase;protein_id=WP_000105592.1;transl_table=11
NZ_APAH01000439.1	RefSeq	gene	5365	6330	.	+	.	ID=gene-CFSAN001082_RS44905;Name=CFSAN001082_RS44905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44905;old_locus_tag=CFSAN001082_21354
NZ_APAH01000439.1	Protein Homology	CDS	5365	6330	.	+	0	ID=cds-WP_000859023.1;Parent=gene-CFSAN001082_RS44905;Dbxref=GenBank:WP_000859023.1;Name=WP_000859023.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459328.1;locus_tag=CFSAN001082_RS44905;product=LysR family transcriptional regulator;protein_id=WP_000859023.1;transl_table=11
NZ_APAH01000439.1	RefSeq	gene	6275	6547	.	-	.	ID=gene-CFSAN001082_RS48065;Name=CFSAN001082_RS48065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48065;old_locus_tag=CFSAN001082_21359
NZ_APAH01000439.1	Protein Homology	CDS	6275	6547	.	-	0	ID=cds-WP_001675688.1;Parent=gene-CFSAN001082_RS48065;Dbxref=GenBank:WP_001675688.1;Name=WP_001675688.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459329.1;locus_tag=CFSAN001082_RS48065;product=hypothetical protein;protein_id=WP_001675688.1;transl_table=11
##sequence-region NZ_APAH01000440.1 1 20018
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000440.1	RefSeq	region	1	20018	.	+	.	ID=NZ_APAH01000440.1:1..20018;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000440.1	RefSeq	gene	69	269	.	+	.	ID=gene-CFSAN001082_RS48445;Name=CFSAN001082_RS48445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48445
NZ_APAH01000440.1	GeneMarkS-2+	CDS	69	269	.	+	0	ID=cds-WP_016705258.1;Parent=gene-CFSAN001082_RS48445;Dbxref=GenBank:WP_016705258.1;Name=WP_016705258.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48445;product=hypothetical protein;protein_id=WP_016705258.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	414	1700	.	-	.	ID=gene-CFSAN001082_RS44915;Name=CFSAN001082_RS44915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44915;old_locus_tag=CFSAN001082_21364
NZ_APAH01000440.1	Protein Homology	CDS	414	1700	.	-	0	ID=cds-WP_000219717.1;Parent=gene-CFSAN001082_RS44915;Dbxref=GenBank:WP_000219717.1;Name=WP_000219717.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460250.1;locus_tag=CFSAN001082_RS44915;product=YeaH/YhbH family protein;protein_id=WP_000219717.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	1823	3757	.	-	.	ID=gene-CFSAN001082_RS44920;Name=yeaG;gbkey=Gene;gene=yeaG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44920;old_locus_tag=CFSAN001082_21369
NZ_APAH01000440.1	Protein Homology	CDS	1823	3757	.	-	0	ID=cds-WP_001518010.1;Parent=gene-CFSAN001082_RS44920;Dbxref=GenBank:WP_001518010.1;Name=WP_001518010.1;gbkey=CDS;gene=yeaG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011411173.1;locus_tag=CFSAN001082_RS44920;product=protein kinase YeaG;protein_id=WP_001518010.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	4184	4930	.	+	.	ID=gene-CFSAN001082_RS44925;Name=CFSAN001082_RS44925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44925;old_locus_tag=CFSAN001082_21374
NZ_APAH01000440.1	Protein Homology	CDS	4184	4930	.	+	0	ID=cds-WP_000163762.1;Parent=gene-CFSAN001082_RS44925;Dbxref=GenBank:WP_000163762.1;Name=WP_000163762.1;Ontology_term=GO:0009252,GO:0030674,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=protein-macromolecule adaptor activity|0030674||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460252.1;locus_tag=CFSAN001082_RS44925;product=MipA/OmpV family protein;protein_id=WP_000163762.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	5220	6416	.	+	.	ID=gene-CFSAN001082_RS44930;Name=CFSAN001082_RS44930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44930;old_locus_tag=CFSAN001082_21379
NZ_APAH01000440.1	Protein Homology	CDS	5220	6416	.	+	0	ID=cds-WP_023254862.1;Parent=gene-CFSAN001082_RS44930;Dbxref=GenBank:WP_023254862.1;Name=WP_023254862.1;Ontology_term=GO:0018209,GO:0046500,GO:0016491,GO:0051539;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=peptidyl-serine modification|0018209||IEA,S-adenosylmethionine metabolic process|0046500||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460253.1;locus_tag=CFSAN001082_RS44930;product=anaerobic sulfatase maturase;protein_id=WP_023254862.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	6513	7370	.	+	.	ID=gene-CFSAN001082_RS44935;Name=CFSAN001082_RS44935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44935;old_locus_tag=CFSAN001082_21384
NZ_APAH01000440.1	Protein Homology	CDS	6513	7370	.	+	0	ID=cds-WP_000843752.1;Parent=gene-CFSAN001082_RS44935;Dbxref=GenBank:WP_000843752.1;Name=WP_000843752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460254.1;locus_tag=CFSAN001082_RS44935;product=aldo/keto reductase;protein_id=WP_000843752.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	7469	8353	.	-	.	ID=gene-CFSAN001082_RS44940;Name=CFSAN001082_RS44940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44940;old_locus_tag=CFSAN001082_21389
NZ_APAH01000440.1	Protein Homology	CDS	7469	8353	.	-	0	ID=cds-WP_000608657.1;Parent=gene-CFSAN001082_RS44940;Dbxref=GenBank:WP_000608657.1;Name=WP_000608657.1;Ontology_term=GO:0005975,GO:0016857;gbkey=CDS;go_function=racemase and epimerase activity%2C acting on carbohydrates and derivatives|0016857||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460255.1;locus_tag=CFSAN001082_RS44940;product=D-hexose-6-phosphate mutarotase;protein_id=WP_000608657.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	8682	9677	.	-	.	ID=gene-CFSAN001082_RS44945;Name=gapA;gbkey=Gene;gene=gapA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44945;old_locus_tag=CFSAN001082_21394
NZ_APAH01000440.1	Protein Homology	CDS	8682	9677	.	-	0	ID=cds-WP_000153505.1;Parent=gene-CFSAN001082_RS44945;Dbxref=GenBank:WP_000153505.1;Name=WP_000153505.1;gbkey=CDS;gene=gapA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006322611.1;locus_tag=CFSAN001082_RS44945;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_000153505.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	10019	10432	.	+	.	ID=gene-CFSAN001082_RS44950;Name=msrB;gbkey=Gene;gene=msrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44950;old_locus_tag=CFSAN001082_21399
NZ_APAH01000440.1	Protein Homology	CDS	10019	10432	.	+	0	ID=cds-WP_001519539.1;Parent=gene-CFSAN001082_RS44950;Dbxref=GenBank:WP_001519539.1;Name=WP_001519539.1;Ontology_term=GO:0006979,GO:0030091,GO:0033743;gbkey=CDS;gene=msrB;go_function=peptide-methionine (R)-S-oxide reductase activity|0033743||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310514.1;locus_tag=CFSAN001082_RS44950;product=peptide-methionine (R)-S-oxide reductase MsrB;protein_id=WP_001519539.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	10474	10752	.	+	.	ID=gene-CFSAN001082_RS44955;Name=CFSAN001082_RS44955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44955;old_locus_tag=CFSAN001082_21404
NZ_APAH01000440.1	Protein Homology	CDS	10474	10752	.	+	0	ID=cds-WP_001046864.1;Parent=gene-CFSAN001082_RS44955;Dbxref=GenBank:WP_001046864.1;Name=WP_001046864.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460258.1;locus_tag=CFSAN001082_RS44955;product=YeaC family protein;protein_id=WP_001046864.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	11103	11759	.	-	.	ID=gene-CFSAN001082_RS44960;Name=pncA;gbkey=Gene;gene=pncA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44960;old_locus_tag=CFSAN001082_21409
NZ_APAH01000440.1	Protein Homology	CDS	11103	11759	.	-	0	ID=cds-WP_000184707.1;Parent=gene-CFSAN001082_RS44960;Dbxref=GenBank:WP_000184707.1;Name=WP_000184707.1;gbkey=CDS;gene=pncA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460259.1;locus_tag=CFSAN001082_RS44960;product=bifunctional nicotinamidase/pyrazinamidase;protein_id=WP_000184707.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	11786	12802	.	-	.	ID=gene-CFSAN001082_RS44965;Name=ansA;gbkey=Gene;gene=ansA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44965;old_locus_tag=CFSAN001082_21414
NZ_APAH01000440.1	Protein Homology	CDS	11786	12802	.	-	0	ID=cds-WP_001170136.1;Parent=gene-CFSAN001082_RS44965;Dbxref=GenBank:WP_001170136.1;Name=WP_001170136.1;Ontology_term=GO:0006520,GO:0004067;gbkey=CDS;gene=ansA;go_function=asparaginase activity|0004067||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460260.1;locus_tag=CFSAN001082_RS44965;product=asparaginase;protein_id=WP_001170136.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	12898	14754	.	-	.	ID=gene-CFSAN001082_RS44970;Name=sppA;gbkey=Gene;gene=sppA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44970;old_locus_tag=CFSAN001082_21419
NZ_APAH01000440.1	Protein Homology	CDS	12898	14754	.	-	0	ID=cds-WP_001259874.1;Parent=gene-CFSAN001082_RS44970;Dbxref=GenBank:WP_001259874.1;Name=WP_001259874.1;Ontology_term=GO:0006465,GO:0008233;gbkey=CDS;gene=sppA;go_function=peptidase activity|0008233||IEA;go_process=signal peptide processing|0006465||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460261.1;locus_tag=CFSAN001082_RS44970;product=signal peptide peptidase SppA;protein_id=WP_001259874.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	14928	15479	.	+	.	ID=gene-CFSAN001082_RS44975;Name=CFSAN001082_RS44975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44975;old_locus_tag=CFSAN001082_21424
NZ_APAH01000440.1	Protein Homology	CDS	14928	15479	.	+	0	ID=cds-WP_000339313.1;Parent=gene-CFSAN001082_RS44975;Dbxref=GenBank:WP_000339313.1;Name=WP_000339313.1;Ontology_term=GO:0016491;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460262.1;locus_tag=CFSAN001082_RS44975;product=NAD(P)H nitroreductase;protein_id=WP_000339313.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	15597	16640	.	+	.	ID=gene-CFSAN001082_RS44980;Name=selD;gbkey=Gene;gene=selD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44980;old_locus_tag=CFSAN001082_21429
NZ_APAH01000440.1	Protein Homology	CDS	15597	16640	.	+	0	ID=cds-WP_001294888.1;Parent=gene-CFSAN001082_RS44980;Dbxref=GenBank:WP_001294888.1;Name=WP_001294888.1;Ontology_term=GO:0016260,GO:0004756;gbkey=CDS;gene=selD;go_function=selenide%2C water dikinase activity|0004756||IEA;go_process=selenocysteine biosynthetic process|0016260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460263.1;locus_tag=CFSAN001082_RS44980;product=selenide%2C water dikinase SelD;protein_id=WP_001294888.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	16645	18594	.	+	.	ID=gene-CFSAN001082_RS44985;Name=topB;gbkey=Gene;gene=topB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44985;old_locus_tag=CFSAN001082_21434
NZ_APAH01000440.1	Protein Homology	CDS	16645	18594	.	+	0	ID=cds-WP_001235874.1;Parent=gene-CFSAN001082_RS44985;Dbxref=GenBank:WP_001235874.1;Name=WP_001235874.1;gbkey=CDS;gene=topB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460264.1;locus_tag=CFSAN001082_RS44985;product=DNA topoisomerase III;protein_id=WP_001235874.1;transl_table=11
NZ_APAH01000440.1	RefSeq	gene	18624	19967	.	-	.	ID=gene-CFSAN001082_RS44990;Name=gdhA;gbkey=Gene;gene=gdhA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44990;old_locus_tag=CFSAN001082_21439
NZ_APAH01000440.1	Protein Homology	CDS	18624	19967	.	-	0	ID=cds-WP_023254863.1;Parent=gene-CFSAN001082_RS44990;Dbxref=GenBank:WP_023254863.1;Name=WP_023254863.1;Ontology_term=GO:0006520,GO:0016639;gbkey=CDS;gene=gdhA;go_function=oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor|0016639||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460265.1;locus_tag=CFSAN001082_RS44990;product=NADP-specific glutamate dehydrogenase;protein_id=WP_023254863.1;transl_table=11
##sequence-region NZ_APAH01000441.1 1 477
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000441.1	RefSeq	region	1	477	.	+	.	ID=NZ_APAH01000441.1:1..477;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000441.1	RefSeq	gene	1	402	.	+	.	ID=gene-CFSAN001082_RS44995;Name=CFSAN001082_RS44995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS44995;old_locus_tag=CFSAN001082_21444;partial=true;start_range=.,1
NZ_APAH01000441.1	Protein Homology	CDS	1	402	.	+	0	ID=cds-WP_023254864.1;Parent=gene-CFSAN001082_RS44995;Dbxref=GenBank:WP_023254864.1;Name=WP_023254864.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462619.1;locus_tag=CFSAN001082_RS44995;partial=true;product=glycosyltransferase;protein_id=WP_023254864.1;start_range=.,1;transl_table=11
NZ_APAH01000441.1	RefSeq	gene	408	477	.	+	.	ID=gene-CFSAN001082_RS49010;Name=CFSAN001082_RS49010;end_range=477,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49010;partial=true
NZ_APAH01000441.1	Protein Homology	CDS	408	477	.	+	0	ID=cds-WP_235654394.1;Parent=gene-CFSAN001082_RS49010;Dbxref=GenBank:WP_235654394.1;Name=WP_235654394.1;end_range=477,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462618.1;locus_tag=CFSAN001082_RS49010;partial=true;product=hypothetical protein;protein_id=WP_235654394.1;transl_table=11
##sequence-region NZ_APAH01000442.1 1 289
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000442.1	RefSeq	region	1	289	.	+	.	ID=NZ_APAH01000442.1:1..289;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000443.1 1 7606
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000443.1	RefSeq	region	1	7606	.	+	.	ID=NZ_APAH01000443.1:1..7606;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000443.1	RefSeq	gene	1	153	.	+	.	ID=gene-CFSAN001082_RS45000;Name=CFSAN001082_RS45000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45000;old_locus_tag=CFSAN001082_21449;partial=true;start_range=.,1
NZ_APAH01000443.1	Protein Homology	CDS	1	153	.	+	0	ID=cds-WP_023254865.1;Parent=gene-CFSAN001082_RS45000;Dbxref=GenBank:WP_023254865.1;Name=WP_023254865.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459259.1;locus_tag=CFSAN001082_RS45000;partial=true;product=hydroxyacylglutathione hydrolase C-terminal domain-containing protein;protein_id=WP_023254865.1;start_range=.,1;transl_table=11
NZ_APAH01000443.1	RefSeq	gene	225	1592	.	+	.	ID=gene-CFSAN001082_RS45005;Name=mltD;gbkey=Gene;gene=mltD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45005;old_locus_tag=CFSAN001082_21454
NZ_APAH01000443.1	Protein Homology	CDS	225	1592	.	+	0	ID=cds-WP_000644706.1;Parent=gene-CFSAN001082_RS45005;Dbxref=GenBank:WP_000644706.1;Name=WP_000644706.1;Ontology_term=GO:0000270,GO:0008933,GO:0016020;gbkey=CDS;gene=mltD;go_component=membrane|0016020||IEA;go_function=peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459258.1;locus_tag=CFSAN001082_RS45005;product=murein transglycosylase D;protein_id=WP_000644706.1;transl_table=11
NZ_APAH01000443.1	RefSeq	gene	1648	2418	.	-	.	ID=gene-CFSAN001082_RS45010;Name=CFSAN001082_RS45010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45010;old_locus_tag=CFSAN001082_21459
NZ_APAH01000443.1	Protein Homology	CDS	1648	2418	.	-	0	ID=cds-WP_023254866.1;Parent=gene-CFSAN001082_RS45010;Dbxref=GenBank:WP_023254866.1;Name=WP_023254866.1;Ontology_term=GO:0008168,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459257.1;locus_tag=CFSAN001082_RS45010;product=class I SAM-dependent methyltransferase;protein_id=WP_023254866.1;transl_table=11
NZ_APAH01000443.1	RefSeq	gene	2496	3296	.	-	.	ID=gene-CFSAN001082_RS45015;Name=CFSAN001082_RS45015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45015;old_locus_tag=CFSAN001082_21464
NZ_APAH01000443.1	Protein Homology	CDS	2496	3296	.	-	0	ID=cds-WP_001230970.1;Parent=gene-CFSAN001082_RS45015;Dbxref=GenBank:WP_001230970.1;Name=WP_001230970.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414745.1;locus_tag=CFSAN001082_RS45015;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_001230970.1;transl_table=11
NZ_APAH01000443.1	RefSeq	gene	3428	4603	.	-	.	ID=gene-CFSAN001082_RS45020;Name=CFSAN001082_RS45020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45020;old_locus_tag=CFSAN001082_21469
NZ_APAH01000443.1	Protein Homology	CDS	3428	4603	.	-	0	ID=cds-WP_023254867.1;Parent=gene-CFSAN001082_RS45020;Dbxref=GenBank:WP_023254867.1;Name=WP_023254867.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459255.1;locus_tag=CFSAN001082_RS45020;product=MFS transporter;protein_id=WP_023254867.1;transl_table=11
NZ_APAH01000443.1	RefSeq	gene	4708	5622	.	+	.	ID=gene-CFSAN001082_RS45025;Name=yafC;gbkey=Gene;gene=yafC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45025;old_locus_tag=CFSAN001082_21474
NZ_APAH01000443.1	Protein Homology	CDS	4708	5622	.	+	0	ID=cds-WP_000648534.1;Parent=gene-CFSAN001082_RS45025;Dbxref=GenBank:WP_000648534.1;Name=WP_000648534.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yafC;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459254.1;locus_tag=CFSAN001082_RS45025;product=DNA-binding transcriptional regulator YafC;protein_id=WP_000648534.1;transl_table=11
NZ_APAH01000443.1	RefSeq	gene	5644	6447	.	-	.	ID=gene-CFSAN001082_RS45030;Name=dkgB;gbkey=Gene;gene=dkgB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45030;old_locus_tag=CFSAN001082_21479
NZ_APAH01000443.1	Protein Homology	CDS	5644	6447	.	-	0	ID=cds-WP_023254868.1;Parent=gene-CFSAN001082_RS45030;Dbxref=GenBank:WP_023254868.1;Name=WP_023254868.1;Ontology_term=GO:0047834;gbkey=CDS;gene=dkgB;go_function=D-threo-aldose 1-dehydrogenase activity|0047834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459253.1;locus_tag=CFSAN001082_RS45030;product=2%2C5-didehydrogluconate reductase DkgB;protein_id=WP_023254868.1;transl_table=11
NZ_APAH01000443.1	RefSeq	gene	6612	6688	.	-	.	ID=gene-CFSAN001082_RS45035;Name=CFSAN001082_RS45035;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS45035;old_locus_tag=CFSAN001082_t21486
NZ_APAH01000443.1	tRNAscan-SE	tRNA	6612	6688	.	-	.	ID=rna-CFSAN001082_RS45035;Parent=gene-CFSAN001082_RS45035;anticodon=(pos:complement(6652..6654));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS45035;product=tRNA-Asp
NZ_APAH01000443.1	tRNAscan-SE	exon	6612	6688	.	-	.	ID=exon-CFSAN001082_RS45035-1;Parent=rna-CFSAN001082_RS45035;anticodon=(pos:complement(6652..6654));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS45035;product=tRNA-Asp
NZ_APAH01000443.1	RefSeq	gene	6880	6995	.	-	.	ID=gene-CFSAN001082_RS45040;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=CFSAN001082_RS45040;old_locus_tag=CFSAN001082_r21488
NZ_APAH01000443.1	cmsearch	rRNA	6880	6995	.	-	.	ID=rna-CFSAN001082_RS45040;Parent=gene-CFSAN001082_RS45040;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS45040;product=5S ribosomal RNA
NZ_APAH01000443.1	cmsearch	exon	6880	6995	.	-	.	ID=exon-CFSAN001082_RS45040-1;Parent=rna-CFSAN001082_RS45040;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS45040;product=5S ribosomal RNA
NZ_APAH01000443.1	RefSeq	gene	7192	7606	.	-	.	ID=gene-CFSAN001082_RS45045;Name=CFSAN001082_RS45045;end_range=7606,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS45045;old_locus_tag=CFSAN001082_r21490;partial=true
NZ_APAH01000443.1	cmsearch	rRNA	7192	7606	.	-	.	ID=rna-CFSAN001082_RS45045;Parent=gene-CFSAN001082_RS45045;Dbxref=RFAM:RF02541;end_range=7606,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS45045;partial=true;product=23S ribosomal RNA
NZ_APAH01000443.1	cmsearch	exon	7192	7606	.	-	.	ID=exon-CFSAN001082_RS45045-1;Parent=rna-CFSAN001082_RS45045;Dbxref=RFAM:RF02541;end_range=7606,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS45045;partial=true;product=23S ribosomal RNA
##sequence-region NZ_APAH01000444.1 1 424
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000444.1	RefSeq	region	1	424	.	+	.	ID=NZ_APAH01000444.1:1..424;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000444.1	RefSeq	pseudogene	1	424	.	-	.	ID=gene-CFSAN001082_RS45050;Name=CFSAN001082_RS45050;end_range=424,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS45050;old_locus_tag=CFSAN001082_21490;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000444.1	Protein Homology	CDS	1	424	.	-	1	ID=cds-CFSAN001082_RS45050;Parent=gene-CFSAN001082_RS45050;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=424,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461011.1;locus_tag=CFSAN001082_RS45050;partial=true;product=E3 ubiquitin--protein ligase;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000445.1 1 3484
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000445.1	RefSeq	region	1	3484	.	+	.	ID=NZ_APAH01000445.1:1..3484;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000445.1	RefSeq	gene	5	73	.	+	.	ID=gene-CFSAN001082_RS48450;Name=CFSAN001082_RS48450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48450
NZ_APAH01000445.1	Protein Homology	CDS	5	73	.	+	0	ID=cds-WP_226985663.1;Parent=gene-CFSAN001082_RS48450;Dbxref=GenBank:WP_226985663.1;Name=WP_226985663.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF022500.6;locus_tag=CFSAN001082_RS48450;product=hypothetical protein;protein_id=WP_226985663.1;transl_table=11
NZ_APAH01000445.1	RefSeq	gene	145	2427	.	-	.	ID=gene-CFSAN001082_RS45055;Name=pflB;gbkey=Gene;gene=pflB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45055;old_locus_tag=CFSAN001082_21495
NZ_APAH01000445.1	Protein Homology	CDS	145	2427	.	-	0	ID=cds-WP_001292799.1;Parent=gene-CFSAN001082_RS45055;Dbxref=GenBank:WP_001292799.1;Name=WP_001292799.1;Ontology_term=GO:0005975,GO:0008861,GO:0005737;gbkey=CDS;gene=pflB;go_component=cytoplasm|0005737||IEA;go_function=formate C-acetyltransferase activity|0008861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459948.1;locus_tag=CFSAN001082_RS45055;product=formate C-acetyltransferase;protein_id=WP_001292799.1;transl_table=11
NZ_APAH01000445.1	RefSeq	gene	2487	3344	.	-	.	ID=gene-CFSAN001082_RS45060;Name=focA;gbkey=Gene;gene=focA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45060;old_locus_tag=CFSAN001082_21500
NZ_APAH01000445.1	Protein Homology	CDS	2487	3344	.	-	0	ID=cds-WP_000642539.1;Parent=gene-CFSAN001082_RS45060;Dbxref=GenBank:WP_000642539.1;Name=WP_000642539.1;gbkey=CDS;gene=focA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459949.1;locus_tag=CFSAN001082_RS45060;product=formate transporter FocA;protein_id=WP_000642539.1;transl_table=11
##sequence-region NZ_APAH01000446.1 1 296
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000446.1	RefSeq	region	1	296	.	+	.	ID=NZ_APAH01000446.1:1..296;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000446.1	RefSeq	pseudogene	1	184	.	-	.	ID=gene-CFSAN001082_RS49015;Name=CFSAN001082_RS49015;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49015;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000446.1	Protein Homology	CDS	1	184	.	-	0	ID=cds-CFSAN001082_RS49015;Parent=gene-CFSAN001082_RS49015;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000286640.1;locus_tag=CFSAN001082_RS49015;partial=true;product=alpha-1%2C2-fucosyltransferase;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000447.1 1 202
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000447.1	RefSeq	region	1	202	.	+	.	ID=NZ_APAH01000447.1:1..202;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000447.1	RefSeq	gene	122	202	.	+	.	ID=gene-CFSAN001082_RS47590;Name=CFSAN001082_RS47590;end_range=202,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS47590;partial=true
NZ_APAH01000447.1	Protein Homology	CDS	122	202	.	+	0	ID=cds-WP_149022876.1;Parent=gene-CFSAN001082_RS47590;Dbxref=GenBank:WP_149022876.1;Name=WP_149022876.1;end_range=202,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461866.1;locus_tag=CFSAN001082_RS47590;partial=true;product=hypothetical protein;protein_id=WP_149022876.1;transl_table=11
##sequence-region NZ_APAH01000448.1 1 631
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000448.1	RefSeq	region	1	631	.	+	.	ID=NZ_APAH01000448.1:1..631;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000448.1	RefSeq	gene	1	615	.	-	.	ID=gene-CFSAN001082_RS45070;Name=sifA;gbkey=Gene;gene=sifA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45070;old_locus_tag=CFSAN001082_21510;partial=true;start_range=.,1
NZ_APAH01000448.1	Protein Homology	CDS	1	615	.	-	0	ID=cds-WP_024150336.1;Parent=gene-CFSAN001082_RS45070;Dbxref=GenBank:WP_024150336.1;Name=WP_024150336.1;gbkey=CDS;gene=sifA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460194.1;locus_tag=CFSAN001082_RS45070;partial=true;product=SPI-2 type III secretion system effector SifA;protein_id=WP_024150336.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000449.1 1 264
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000449.1	RefSeq	region	1	264	.	+	.	ID=NZ_APAH01000449.1:1..264;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000450.1 1 7447
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000450.1	RefSeq	region	1	7447	.	+	.	ID=NZ_APAH01000450.1:1..7447;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000450.1	RefSeq	gene	302	1006	.	-	.	ID=gene-CFSAN001082_RS45075;Name=CFSAN001082_RS45075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45075;old_locus_tag=CFSAN001082_21515
NZ_APAH01000450.1	Protein Homology	CDS	302	1006	.	-	0	ID=cds-WP_023225083.1;Parent=gene-CFSAN001082_RS45075;Dbxref=GenBank:WP_023225083.1;Name=WP_023225083.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462542.1;locus_tag=CFSAN001082_RS45075;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_023225083.1;transl_table=11
NZ_APAH01000450.1	RefSeq	gene	1163	1744	.	+	.	ID=gene-CFSAN001082_RS45080;Name=tag;gbkey=Gene;gene=tag;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45080;old_locus_tag=CFSAN001082_21520
NZ_APAH01000450.1	Protein Homology	CDS	1163	1744	.	+	0	ID=cds-WP_001188421.1;Parent=gene-CFSAN001082_RS45080;Dbxref=GenBank:WP_001188421.1;Name=WP_001188421.1;gbkey=CDS;gene=tag;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462543.1;locus_tag=CFSAN001082_RS45080;product=DNA-3-methyladenine glycosylase I;protein_id=WP_001188421.1;transl_table=11
NZ_APAH01000450.1	RefSeq	gene	1722	2162	.	+	.	ID=gene-CFSAN001082_RS45085;Name=CFSAN001082_RS45085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45085;old_locus_tag=CFSAN001082_21525
NZ_APAH01000450.1	Protein Homology	CDS	1722	2162	.	+	0	ID=cds-WP_000619902.1;Parent=gene-CFSAN001082_RS45085;Dbxref=GenBank:WP_000619902.1;Name=WP_000619902.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462544.1;locus_tag=CFSAN001082_RS45085;product=N-acetyltransferase;protein_id=WP_000619902.1;transl_table=11
NZ_APAH01000450.1	RefSeq	gene	2131	4464	.	-	.	ID=gene-CFSAN001082_RS45090;Name=CFSAN001082_RS45090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45090;old_locus_tag=CFSAN001082_21530
NZ_APAH01000450.1	Protein Homology	CDS	2131	4464	.	-	0	ID=cds-WP_023254872.1;Parent=gene-CFSAN001082_RS45090;Dbxref=GenBank:WP_023254872.1;Name=WP_023254872.1;Ontology_term=GO:0016491,GO:0043546;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,molybdopterin cofactor binding|0043546||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462545.1;locus_tag=CFSAN001082_RS45090;product=molybdopterin guanine dinucleotide-containing S/N-oxide reductase;protein_id=WP_023254872.1;transl_table=11
NZ_APAH01000450.1	RefSeq	gene	4617	5279	.	+	.	ID=gene-CFSAN001082_RS45095;Name=CFSAN001082_RS45095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45095;old_locus_tag=CFSAN001082_21535
NZ_APAH01000450.1	Protein Homology	CDS	4617	5279	.	+	0	ID=cds-WP_000747548.1;Parent=gene-CFSAN001082_RS45095;Dbxref=GenBank:WP_000747548.1;Name=WP_000747548.1;Ontology_term=GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462546.1;locus_tag=CFSAN001082_RS45095;product=OmpA family lipoprotein;protein_id=WP_000747548.1;transl_table=11
NZ_APAH01000450.1	RefSeq	gene	5498	6472	.	+	.	ID=gene-CFSAN001082_RS45100;Name=ghrB;gbkey=Gene;gene=ghrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45100;old_locus_tag=CFSAN001082_21540
NZ_APAH01000450.1	Protein Homology	CDS	5498	6472	.	+	0	ID=cds-WP_017441633.1;Parent=gene-CFSAN001082_RS45100;Dbxref=GenBank:WP_017441633.1;Name=WP_017441633.1;Ontology_term=GO:0016616,GO:0051287;gbkey=CDS;gene=ghrB;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462547.1;locus_tag=CFSAN001082_RS45100;product=glyoxylate/hydroxypyruvate reductase GhrB;protein_id=WP_017441633.1;transl_table=11
NZ_APAH01000450.1	RefSeq	gene	6522	7232	.	-	.	ID=gene-CFSAN001082_RS45105;Name=CFSAN001082_RS45105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45105;old_locus_tag=CFSAN001082_21545
NZ_APAH01000450.1	Protein Homology	CDS	6522	7232	.	-	0	ID=cds-WP_000190524.1;Parent=gene-CFSAN001082_RS45105;Dbxref=GenBank:WP_000190524.1;Name=WP_000190524.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462548.1;locus_tag=CFSAN001082_RS45105;product=DUF3053 domain-containing protein;protein_id=WP_000190524.1;transl_table=11
##sequence-region NZ_APAH01000451.1 1 14401
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000451.1	RefSeq	region	1	14401	.	+	.	ID=NZ_APAH01000451.1:1..14401;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000451.1	RefSeq	gene	1	2096	.	+	.	ID=gene-CFSAN001082_RS45110;Name=CFSAN001082_RS45110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45110;old_locus_tag=CFSAN001082_21550;partial=true;start_range=.,1
NZ_APAH01000451.1	Protein Homology	CDS	1	2096	.	+	2	ID=cds-WP_023254873.1;Parent=gene-CFSAN001082_RS45110;Dbxref=GenBank:WP_023254873.1;Name=WP_023254873.1;Ontology_term=GO:0000160,GO:0007165,GO:0071111;gbkey=CDS;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461351.1;locus_tag=CFSAN001082_RS45110;partial=true;product=EAL domain-containing protein;protein_id=WP_023254873.1;start_range=.,1;transl_table=11
NZ_APAH01000451.1	RefSeq	gene	2149	3351	.	-	.	ID=gene-CFSAN001082_RS45115;Name=nupC;gbkey=Gene;gene=nupC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45115;old_locus_tag=CFSAN001082_21555
NZ_APAH01000451.1	Protein Homology	CDS	2149	3351	.	-	0	ID=cds-WP_000376347.1;Parent=gene-CFSAN001082_RS45115;Dbxref=GenBank:WP_000376347.1;Name=WP_000376347.1;gbkey=CDS;gene=nupC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461350.1;locus_tag=CFSAN001082_RS45115;product=nucleoside permease NupC;protein_id=WP_000376347.1;transl_table=11
NZ_APAH01000451.1	RefSeq	gene	3657	3701	.	+	.	ID=gene-CFSAN001082_RS49305;Name=CFSAN001082_RS49305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49305
NZ_APAH01000451.1	Protein Homology	CDS	3657	3701	.	+	0	ID=cds-WP_418338175.1;Parent=gene-CFSAN001082_RS49305;Dbxref=GenBank:WP_418338175.1;Name=WP_418338175.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049535.1;locus_tag=CFSAN001082_RS49305;product=hypothetical protein;protein_id=WP_418338175.1;transl_table=11
NZ_APAH01000451.1	RefSeq	gene	3694	4935	.	+	.	ID=gene-CFSAN001082_RS45120;Name=CFSAN001082_RS45120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45120;old_locus_tag=CFSAN001082_21560
NZ_APAH01000451.1	Protein Homology	CDS	3694	4935	.	+	0	ID=cds-WP_000131734.1;Parent=gene-CFSAN001082_RS45120;Dbxref=GenBank:WP_000131734.1;Name=WP_000131734.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461349.1;locus_tag=CFSAN001082_RS45120;product=Nramp family divalent metal transporter;protein_id=WP_000131734.1;transl_table=11
NZ_APAH01000451.1	RefSeq	gene	4996	5322	.	-	.	ID=gene-CFSAN001082_RS45125;Name=ypeC;gbkey=Gene;gene=ypeC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45125;old_locus_tag=CFSAN001082_21565
NZ_APAH01000451.1	Protein Homology	CDS	4996	5322	.	-	0	ID=cds-WP_000490091.1;Parent=gene-CFSAN001082_RS45125;Dbxref=GenBank:WP_000490091.1;Name=WP_000490091.1;gbkey=CDS;gene=ypeC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461348.1;locus_tag=CFSAN001082_RS45125;product=DUF2502 domain-containing protein YpeC;protein_id=WP_000490091.1;transl_table=11
NZ_APAH01000451.1	RefSeq	gene	5436	6434	.	-	.	ID=gene-CFSAN001082_RS45130;Name=mgrA;gbkey=Gene;gene=mgrA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45130;old_locus_tag=CFSAN001082_21570
NZ_APAH01000451.1	Protein Homology	CDS	5436	6434	.	-	0	ID=cds-WP_017441406.1;Parent=gene-CFSAN001082_RS45130;Dbxref=GenBank:WP_017441406.1;Name=WP_017441406.1;Ontology_term=GO:0047834;gbkey=CDS;gene=mgrA;go_function=D-threo-aldose 1-dehydrogenase activity|0047834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461347.1;locus_tag=CFSAN001082_RS45130;product=L-glyceraldehyde 3-phosphate reductase;protein_id=WP_017441406.1;transl_table=11
NZ_APAH01000451.1	RefSeq	gene	6614	8266	.	+	.	ID=gene-CFSAN001082_RS45135;Name=CFSAN001082_RS45135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45135;old_locus_tag=CFSAN001082_21575
NZ_APAH01000451.1	Protein Homology	CDS	6614	8266	.	+	0	ID=cds-WP_001180856.1;Parent=gene-CFSAN001082_RS45135;Dbxref=GenBank:WP_001180856.1;Name=WP_001180856.1;Ontology_term=GO:0016831,GO:0030976,GO:0046872;gbkey=CDS;go_function=carboxy-lyase activity|0016831||IEA,thiamine pyrophosphate binding|0030976||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461346.1;locus_tag=CFSAN001082_RS45135;product=alpha-keto acid decarboxylase family protein;protein_id=WP_001180856.1;transl_table=11
NZ_APAH01000451.1	RefSeq	gene	8286	9521	.	-	.	ID=gene-CFSAN001082_RS45140;Name=CFSAN001082_RS45140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45140;old_locus_tag=CFSAN001082_21580
NZ_APAH01000451.1	Protein Homology	CDS	8286	9521	.	-	0	ID=cds-WP_023254874.1;Parent=gene-CFSAN001082_RS45140;Dbxref=GenBank:WP_023254874.1;Name=WP_023254874.1;Ontology_term=GO:0005247;gbkey=CDS;go_function=voltage-gated chloride channel activity|0005247||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461345.1;locus_tag=CFSAN001082_RS45140;product=ion channel protein;protein_id=WP_023254874.1;transl_table=11
NZ_APAH01000451.1	RefSeq	gene	9725	10690	.	+	.	ID=gene-CFSAN001082_RS45145;Name=glk;gbkey=Gene;gene=glk;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45145;old_locus_tag=CFSAN001082_21585
NZ_APAH01000451.1	Protein Homology	CDS	9725	10690	.	+	0	ID=cds-WP_000170380.1;Parent=gene-CFSAN001082_RS45145;Dbxref=GenBank:WP_000170380.1;Name=WP_000170380.1;Ontology_term=GO:0006096,GO:0051156,GO:0004340,GO:0005524,GO:0005536;gbkey=CDS;gene=glk;go_function=glucokinase activity|0004340||IEA,ATP binding|0005524||IEA,D-glucose binding|0005536||IEA;go_process=glycolytic process|0006096||IEA,glucose 6-phosphate metabolic process|0051156||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461344.1;locus_tag=CFSAN001082_RS45145;product=glucokinase;protein_id=WP_000170380.1;transl_table=11
NZ_APAH01000451.1	RefSeq	gene	11413	12651	.	+	.	ID=gene-CFSAN001082_RS45150;Name=alaC;gbkey=Gene;gene=alaC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45150;old_locus_tag=CFSAN001082_21590
NZ_APAH01000451.1	Protein Homology	CDS	11413	12651	.	+	0	ID=cds-WP_000763118.1;Parent=gene-CFSAN001082_RS45150;Dbxref=GenBank:WP_000763118.1;Name=WP_000763118.1;Ontology_term=GO:0009058,GO:0003824,GO:0030170;gbkey=CDS;gene=alaC;go_function=catalytic activity|0003824||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461343.1;locus_tag=CFSAN001082_RS45150;product=alanine transaminase;protein_id=WP_000763118.1;transl_table=11
NZ_APAH01000451.1	RefSeq	gene	12701	12772	.	-	.	ID=gene-CFSAN001082_RS48460;Name=ypdK;gbkey=Gene;gene=ypdK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48460
NZ_APAH01000451.1	Protein Homology	CDS	12701	12772	.	-	0	ID=cds-WP_010723117.1;Parent=gene-CFSAN001082_RS48460;Dbxref=GenBank:WP_010723117.1;Name=WP_010723117.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ypdK;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_077777854.1;locus_tag=CFSAN001082_RS48460;product=membrane protein YpdK;protein_id=WP_010723117.1;transl_table=11
NZ_APAH01000451.1	RefSeq	gene	13175	14095	.	-	.	ID=gene-CFSAN001082_RS45155;Name=lpxP;gbkey=Gene;gene=lpxP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45155;old_locus_tag=CFSAN001082_21595
NZ_APAH01000451.1	Protein Homology	CDS	13175	14095	.	-	0	ID=cds-WP_000484431.1;Parent=gene-CFSAN001082_RS45155;Dbxref=GenBank:WP_000484431.1;Name=WP_000484431.1;Ontology_term=GO:0009409,GO:0036104,GO:0008951,GO:0016020;gbkey=CDS;gene=lpxP;go_component=membrane|0016020||IEA;go_function=palmitoleoyl [acyl-carrier-protein]-dependent acyltransferase activity|0008951||IEA;go_process=response to cold|0009409||IEA,Kdo2-lipid A biosynthetic process|0036104||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461342.1;locus_tag=CFSAN001082_RS45155;product=kdo(2)-lipid IV(A) palmitoleoyltransferase;protein_id=WP_000484431.1;transl_table=11
##sequence-region NZ_APAH01000452.1 1 19146
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000452.1	RefSeq	region	1	19146	.	+	.	ID=NZ_APAH01000452.1:1..19146;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000452.1	RefSeq	pseudogene	126	479	.	-	.	ID=gene-CFSAN001082_RS45160;Name=CFSAN001082_RS45160;end_range=479,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS45160;old_locus_tag=CFSAN001082_21600;partial=true;pseudo=true
NZ_APAH01000452.1	Protein Homology	CDS	126	479	.	-	0	ID=cds-CFSAN001082_RS45160;Parent=gene-CFSAN001082_RS45160;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0003677;end_range=479,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524896.1;locus_tag=CFSAN001082_RS45160;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;transl_table=11
NZ_APAH01000452.1	RefSeq	gene	1380	1467	.	-	.	ID=gene-CFSAN001082_RS45165;Name=CFSAN001082_RS45165;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS45165;old_locus_tag=CFSAN001082_t21672
NZ_APAH01000452.1	tRNAscan-SE	tRNA	1380	1467	.	-	.	ID=rna-CFSAN001082_RS45165;Parent=gene-CFSAN001082_RS45165;anticodon=(pos:complement(1431..1433));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS45165;product=tRNA-Ser
NZ_APAH01000452.1	tRNAscan-SE	exon	1380	1467	.	-	.	ID=exon-CFSAN001082_RS45165-1;Parent=rna-CFSAN001082_RS45165;anticodon=(pos:complement(1431..1433));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS45165;product=tRNA-Ser
NZ_APAH01000452.1	RefSeq	gene	1616	2293	.	-	.	ID=gene-CFSAN001082_RS45170;Name=CFSAN001082_RS45170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45170;old_locus_tag=CFSAN001082_21605
NZ_APAH01000452.1	Protein Homology	CDS	1616	2293	.	-	0	ID=cds-WP_000097893.1;Parent=gene-CFSAN001082_RS45170;Dbxref=GenBank:WP_000097893.1;Name=WP_000097893.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459926.1;locus_tag=CFSAN001082_RS45170;product=hydrolase;protein_id=WP_000097893.1;transl_table=11
NZ_APAH01000452.1	RefSeq	gene	2313	3173	.	-	.	ID=gene-CFSAN001082_RS45175;Name=CFSAN001082_RS45175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45175;old_locus_tag=CFSAN001082_21610
NZ_APAH01000452.1	Protein Homology	CDS	2313	3173	.	-	0	ID=cds-WP_023254876.1;Parent=gene-CFSAN001082_RS45175;Dbxref=GenBank:WP_023254876.1;Name=WP_023254876.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459927.1;locus_tag=CFSAN001082_RS45175;product=pirin family protein;protein_id=WP_023254876.1;transl_table=11
NZ_APAH01000452.1	RefSeq	gene	3282	4193	.	+	.	ID=gene-CFSAN001082_RS45180;Name=CFSAN001082_RS45180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45180;old_locus_tag=CFSAN001082_21615
NZ_APAH01000452.1	Protein Homology	CDS	3282	4193	.	+	0	ID=cds-WP_000597928.1;Parent=gene-CFSAN001082_RS45180;Dbxref=GenBank:WP_000597928.1;Name=WP_000597928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459928.1;locus_tag=CFSAN001082_RS45180;product=LysR family transcriptional regulator;protein_id=WP_000597928.1;transl_table=11
NZ_APAH01000452.1	RefSeq	gene	4284	4502	.	-	.	ID=gene-CFSAN001082_RS45185;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45185;old_locus_tag=CFSAN001082_21620
NZ_APAH01000452.1	Protein Homology	CDS	4284	4502	.	-	0	ID=cds-WP_001040187.1;Parent=gene-CFSAN001082_RS45185;Dbxref=GenBank:WP_001040187.1;Name=WP_001040187.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001040186.1;locus_tag=CFSAN001082_RS45185;product=translation initiation factor IF-1;protein_id=WP_001040187.1;transl_table=11
NZ_APAH01000452.1	RefSeq	gene	4814	5518	.	-	.	ID=gene-CFSAN001082_RS45190;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45190;old_locus_tag=CFSAN001082_21625
NZ_APAH01000452.1	Protein Homology	CDS	4814	5518	.	-	0	ID=cds-WP_001241649.1;Parent=gene-CFSAN001082_RS45190;Dbxref=GenBank:WP_001241649.1;Name=WP_001241649.1;Ontology_term=GO:0006508,GO:0008914;gbkey=CDS;gene=aat;go_function=leucyl-tRNA--protein transferase activity|0008914||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459931.1;locus_tag=CFSAN001082_RS45190;product=leucyl/phenylalanyl-tRNA--protein transferase;protein_id=WP_001241649.1;transl_table=11
NZ_APAH01000452.1	RefSeq	gene	5563	7284	.	-	.	ID=gene-CFSAN001082_RS45195;Name=cydC;gbkey=Gene;gene=cydC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45195;old_locus_tag=CFSAN001082_21630
NZ_APAH01000452.1	Protein Homology	CDS	5563	7284	.	-	0	ID=cds-WP_023254877.1;Parent=gene-CFSAN001082_RS45195;Dbxref=GenBank:WP_023254877.1;Name=WP_023254877.1;Ontology_term=GO:0045454,GO:0005524,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;gene=cydC;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459932.1;locus_tag=CFSAN001082_RS45195;product=heme ABC transporter ATP-binding protein/permease CydC;protein_id=WP_023254877.1;transl_table=11
NZ_APAH01000452.1	RefSeq	gene	7285	9051	.	-	.	ID=gene-CFSAN001082_RS45200;Name=cydD;gbkey=Gene;gene=cydD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45200;old_locus_tag=CFSAN001082_21635
NZ_APAH01000452.1	Protein Homology	CDS	7285	9051	.	-	0	ID=cds-WP_001044541.1;Parent=gene-CFSAN001082_RS45200;Dbxref=GenBank:WP_001044541.1;Name=WP_001044541.1;Ontology_term=GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;gene=cydD;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459933.1;locus_tag=CFSAN001082_RS45200;product=heme ABC transporter permease/ATP-binding protein CydD;protein_id=WP_001044541.1;transl_table=11
NZ_APAH01000452.1	RefSeq	gene	9165	10133	.	-	.	ID=gene-CFSAN001082_RS45205;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45205;old_locus_tag=CFSAN001082_21640
NZ_APAH01000452.1	Protein Homology	CDS	9165	10133	.	-	0	ID=cds-WP_000537407.1;Parent=gene-CFSAN001082_RS45205;Dbxref=GenBank:WP_000537407.1;Name=WP_000537407.1;Ontology_term=GO:0019430,GO:0004791;gbkey=CDS;gene=trxB;go_function=thioredoxin-disulfide reductase (NADPH) activity|0004791||IEA;go_process=removal of superoxide radicals|0019430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459934.1;locus_tag=CFSAN001082_RS45205;product=thioredoxin-disulfide reductase;protein_id=WP_000537407.1;transl_table=11
NZ_APAH01000452.1	RefSeq	gene	10680	11174	.	+	.	ID=gene-CFSAN001082_RS45210;Name=lrp;gbkey=Gene;gene=lrp;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45210;old_locus_tag=CFSAN001082_21645
NZ_APAH01000452.1	Protein Homology	CDS	10680	11174	.	+	0	ID=cds-WP_000228469.1;Parent=gene-CFSAN001082_RS45210;Dbxref=GenBank:WP_000228469.1;Name=WP_000228469.1;gbkey=CDS;gene=lrp;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001591745.1;locus_tag=CFSAN001082_RS45210;product=leucine-responsive transcriptional regulator Lrp;protein_id=WP_000228469.1;transl_table=11
NZ_APAH01000452.1	RefSeq	gene	11309	15274	.	+	.	ID=gene-CFSAN001082_RS45215;Name=ftsK;gbkey=Gene;gene=ftsK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45215;old_locus_tag=CFSAN001082_21650
NZ_APAH01000452.1	Protein Homology	CDS	11309	15274	.	+	0	ID=cds-WP_023254878.1;Parent=gene-CFSAN001082_RS45215;Dbxref=GenBank:WP_023254878.1;Name=WP_023254878.1;Ontology_term=GO:0003677,GO:0005524;gbkey=CDS;gene=ftsK;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459936.1;locus_tag=CFSAN001082_RS45215;product=DNA translocase FtsK;protein_id=WP_023254878.1;transl_table=11
NZ_APAH01000452.1	RefSeq	gene	15417	16028	.	+	.	ID=gene-CFSAN001082_RS45220;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45220;old_locus_tag=CFSAN001082_21655
NZ_APAH01000452.1	Protein Homology	CDS	15417	16028	.	+	0	ID=cds-WP_001519746.1;Parent=gene-CFSAN001082_RS45220;Dbxref=GenBank:WP_001519746.1;Name=WP_001519746.1;Ontology_term=GO:0042953,GO:0042597;gbkey=CDS;gene=lolA;go_component=periplasmic space|0042597||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010354356.1;locus_tag=CFSAN001082_RS45220;product=outer membrane lipoprotein chaperone LolA;protein_id=WP_001519746.1;transl_table=11
NZ_APAH01000452.1	RefSeq	gene	16038	17381	.	+	.	ID=gene-CFSAN001082_RS45225;Name=rarA;gbkey=Gene;gene=rarA;gene_biotype=protein_coding;gene_synonym=mgsA;locus_tag=CFSAN001082_RS45225;old_locus_tag=CFSAN001082_21660
NZ_APAH01000452.1	Protein Homology	CDS	16038	17381	.	+	0	ID=cds-WP_023254879.1;Parent=gene-CFSAN001082_RS45225;Dbxref=GenBank:WP_023254879.1;Name=WP_023254879.1;gbkey=CDS;gene=rarA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459938.1;locus_tag=CFSAN001082_RS45225;product=replication-associated recombination protein RarA;protein_id=WP_023254879.1;transl_table=11
NZ_APAH01000452.1	RefSeq	gene	17640	18932	.	+	.	ID=gene-CFSAN001082_RS45230;Name=serS;gbkey=Gene;gene=serS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45230;old_locus_tag=CFSAN001082_21665
NZ_APAH01000452.1	Protein Homology	CDS	17640	18932	.	+	0	ID=cds-WP_000886697.1;Parent=gene-CFSAN001082_RS45230;Dbxref=GenBank:WP_000886697.1;Name=WP_000886697.1;Ontology_term=GO:0006434,GO:0000166,GO:0004828,GO:0005524;gbkey=CDS;gene=serS;go_function=nucleotide binding|0000166||IEA,serine-tRNA ligase activity|0004828||IEA,ATP binding|0005524||IEA;go_process=seryl-tRNA aminoacylation|0006434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000887397.1;locus_tag=CFSAN001082_RS45230;product=serine--tRNA ligase;protein_id=WP_000886697.1;transl_table=11
##sequence-region NZ_APAH01000453.1 1 6943
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000453.1	RefSeq	region	1	6943	.	+	.	ID=NZ_APAH01000453.1:1..6943;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000453.1	RefSeq	gene	205	411	.	+	.	ID=gene-CFSAN001082_RS45235;Name=CFSAN001082_RS45235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45235;old_locus_tag=CFSAN001082_21672
NZ_APAH01000453.1	Protein Homology	CDS	205	411	.	+	0	ID=cds-WP_000401433.1;Parent=gene-CFSAN001082_RS45235;Dbxref=GenBank:WP_000401433.1;Name=WP_000401433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459693.1;locus_tag=CFSAN001082_RS45235;product=YbfA family protein;protein_id=WP_000401433.1;transl_table=11
NZ_APAH01000453.1	RefSeq	gene	522	1943	.	+	.	ID=gene-CFSAN001082_RS45240;Name=phrB;gbkey=Gene;gene=phrB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45240;old_locus_tag=CFSAN001082_21677
NZ_APAH01000453.1	Protein Homology	CDS	522	1943	.	+	0	ID=cds-WP_023254880.1;Parent=gene-CFSAN001082_RS45240;Dbxref=GenBank:WP_023254880.1;Name=WP_023254880.1;gbkey=CDS;gene=phrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459694.1;locus_tag=CFSAN001082_RS45240;product=deoxyribodipyrimidine photo-lyase;protein_id=WP_023254880.1;transl_table=11
NZ_APAH01000453.1	RefSeq	gene	1982	3463	.	-	.	ID=gene-CFSAN001082_RS45245;Name=CFSAN001082_RS45245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45245;old_locus_tag=CFSAN001082_21682
NZ_APAH01000453.1	Protein Homology	CDS	1982	3463	.	-	0	ID=cds-WP_023254881.1;Parent=gene-CFSAN001082_RS45245;Dbxref=GenBank:WP_023254881.1;Name=WP_023254881.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459695.1;locus_tag=CFSAN001082_RS45245;product=MFS transporter;protein_id=WP_023254881.1;transl_table=11
NZ_APAH01000453.1	RefSeq	gene	3792	4535	.	+	.	ID=gene-CFSAN001082_RS45250;Name=ybgI;gbkey=Gene;gene=ybgI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45250;old_locus_tag=CFSAN001082_21687
NZ_APAH01000453.1	Protein Homology	CDS	3792	4535	.	+	0	ID=cds-WP_000798844.1;Parent=gene-CFSAN001082_RS45250;Dbxref=GenBank:WP_000798844.1;Name=WP_000798844.1;gbkey=CDS;gene=ybgI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000798886.1;locus_tag=CFSAN001082_RS45250;product=radiation resistance protein YbgI;protein_id=WP_000798844.1;transl_table=11
NZ_APAH01000453.1	RefSeq	gene	4551	5207	.	+	.	ID=gene-CFSAN001082_RS45255;Name=pxpB;gbkey=Gene;gene=pxpB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45255;old_locus_tag=CFSAN001082_21692
NZ_APAH01000453.1	Protein Homology	CDS	4551	5207	.	+	0	ID=cds-WP_001188371.1;Parent=gene-CFSAN001082_RS45255;Dbxref=GenBank:WP_001188371.1;Name=WP_001188371.1;Ontology_term=GO:0005975,GO:0008152,GO:0017168;gbkey=CDS;gene=pxpB;go_function=5-oxoprolinase (ATP-hydrolyzing) activity|0017168||IEA;go_process=carbohydrate metabolic process|0005975||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459697.1;locus_tag=CFSAN001082_RS45255;product=5-oxoprolinase subunit PxpB;protein_id=WP_001188371.1;transl_table=11
NZ_APAH01000453.1	RefSeq	gene	5201	6133	.	+	.	ID=gene-CFSAN001082_RS45260;Name=pxpC;gbkey=Gene;gene=pxpC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45260;old_locus_tag=CFSAN001082_21697
NZ_APAH01000453.1	Protein Homology	CDS	5201	6133	.	+	0	ID=cds-WP_000932044.1;Parent=gene-CFSAN001082_RS45260;Dbxref=GenBank:WP_000932044.1;Name=WP_000932044.1;Ontology_term=GO:0005975,GO:0008152,GO:0017168;gbkey=CDS;gene=pxpC;go_function=5-oxoprolinase (ATP-hydrolyzing) activity|0017168||IEA;go_process=carbohydrate metabolic process|0005975||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459698.1;locus_tag=CFSAN001082_RS45260;product=5-oxoprolinase subunit PxpC;protein_id=WP_000932044.1;transl_table=11
NZ_APAH01000453.1	RefSeq	gene	6123	6857	.	+	.	ID=gene-CFSAN001082_RS45265;Name=pxpA;gbkey=Gene;gene=pxpA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45265;old_locus_tag=CFSAN001082_21702
NZ_APAH01000453.1	Protein Homology	CDS	6123	6857	.	+	0	ID=cds-WP_023254882.1;Parent=gene-CFSAN001082_RS45265;Dbxref=GenBank:WP_023254882.1;Name=WP_023254882.1;Ontology_term=GO:0005975,GO:0003824;gbkey=CDS;gene=pxpA;go_function=catalytic activity|0003824||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459699.1;locus_tag=CFSAN001082_RS45265;product=5-oxoprolinase subunit PxpA;protein_id=WP_023254882.1;transl_table=11
##sequence-region NZ_APAH01000454.1 1 287
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000454.1	RefSeq	region	1	287	.	+	.	ID=NZ_APAH01000454.1:1..287;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000455.1 1 1894
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000455.1	RefSeq	region	1	1894	.	+	.	ID=NZ_APAH01000455.1:1..1894;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000455.1	RefSeq	gene	3	78	.	+	.	ID=gene-CFSAN001082_RS45270;Name=CFSAN001082_RS45270;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS45270;old_locus_tag=CFSAN001082_t21724
NZ_APAH01000455.1	tRNAscan-SE	tRNA	3	78	.	+	.	ID=rna-CFSAN001082_RS45270;Parent=gene-CFSAN001082_RS45270;anticodon=(pos:36..38);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS45270;product=tRNA-Asn
NZ_APAH01000455.1	tRNAscan-SE	exon	3	78	.	+	.	ID=exon-CFSAN001082_RS45270-1;Parent=rna-CFSAN001082_RS45270;anticodon=(pos:36..38);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS45270;product=tRNA-Asn
NZ_APAH01000455.1	RefSeq	pseudogene	297	1495	.	+	.	ID=gene-CFSAN001082_RS49020;Name=CFSAN001082_RS49020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49020;pseudo=true
NZ_APAH01000455.1	Protein Homology	CDS	297	1495	.	+	0	ID=cds-CFSAN001082_RS49020;Parent=gene-CFSAN001082_RS49020;Note=frameshifted%3B internal stop;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012541215.1;locus_tag=CFSAN001082_RS49020;product=tyrosine-type recombinase/integrase;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000456.1 1 819
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000456.1	RefSeq	region	1	819	.	+	.	ID=NZ_APAH01000456.1:1..819;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000456.1	RefSeq	pseudogene	135	420	.	+	.	ID=gene-CFSAN001082_RS48075;Name=CFSAN001082_RS48075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48075;partial=true;pseudo=true;start_range=.,135
NZ_APAH01000456.1	Protein Homology	CDS	135	420	.	+	0	ID=cds-CFSAN001082_RS48075;Parent=gene-CFSAN001082_RS48075;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000420980.1;locus_tag=CFSAN001082_RS48075;partial=true;product=transposase;pseudo=true;start_range=.,135;transl_table=11
NZ_APAH01000456.1	RefSeq	pseudogene	616	819	.	+	.	ID=gene-CFSAN001082_RS49025;Name=CFSAN001082_RS49025;end_range=819,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49025;partial=true;pseudo=true
NZ_APAH01000456.1	Protein Homology	CDS	616	819	.	+	0	ID=cds-CFSAN001082_RS49025;Parent=gene-CFSAN001082_RS49025;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=819,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000092682.1;locus_tag=CFSAN001082_RS49025;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000457.1 1 247
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000457.1	RefSeq	region	1	247	.	+	.	ID=NZ_APAH01000457.1:1..247;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000457.1	RefSeq	pseudogene	1	247	.	-	.	ID=gene-CFSAN001082_RS49030;Name=sprB;end_range=247,.;gbkey=Gene;gene=sprB;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49030;old_locus_tag=CFSAN001082_21729;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000457.1	Protein Homology	CDS	1	247	.	-	0	ID=cds-CFSAN001082_RS49030;Parent=gene-CFSAN001082_RS49030;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=247,.;gbkey=CDS;gene=sprB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461787.1;locus_tag=CFSAN001082_RS49030;partial=true;product=transcriptional regulator SprB;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000458.1 1 439
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000458.1	RefSeq	region	1	439	.	+	.	ID=NZ_APAH01000458.1:1..439;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000458.1	RefSeq	gene	61	439	.	+	.	ID=gene-CFSAN001082_RS45285;Name=CFSAN001082_RS45285;end_range=439,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45285;old_locus_tag=CFSAN001082_21734;partial=true
NZ_APAH01000458.1	Protein Homology	CDS	61	439	.	+	0	ID=cds-WP_149022877.1;Parent=gene-CFSAN001082_RS45285;Dbxref=GenBank:WP_149022877.1;Name=WP_149022877.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;end_range=439,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459744.1;locus_tag=CFSAN001082_RS45285;partial=true;product=LysR family transcriptional regulator;protein_id=WP_149022877.1;transl_table=11
##sequence-region NZ_APAH01000459.1 1 477
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000459.1	RefSeq	region	1	477	.	+	.	ID=NZ_APAH01000459.1:1..477;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000459.1	RefSeq	pseudogene	1	477	.	+	.	ID=gene-CFSAN001082_RS45290;Name=sprB;end_range=477,.;gbkey=Gene;gene=sprB;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS45290;old_locus_tag=CFSAN001082_21739;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000459.1	Protein Homology	CDS	1	477	.	+	1	ID=cds-CFSAN001082_RS45290;Parent=gene-CFSAN001082_RS45290;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus and C-terminus;end_range=477,.;gbkey=CDS;gene=sprB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461787.1;locus_tag=CFSAN001082_RS45290;partial=true;product=transcriptional regulator SprB;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000460.1 1 26974
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000460.1	RefSeq	region	1	26974	.	+	.	ID=NZ_APAH01000460.1:1..26974;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000460.1	RefSeq	gene	1	561	.	+	.	ID=gene-CFSAN001082_RS45295;Name=CFSAN001082_RS45295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45295;old_locus_tag=CFSAN001082_21744;partial=true;start_range=.,1
NZ_APAH01000460.1	Protein Homology	CDS	1	561	.	+	0	ID=cds-WP_023254887.1;Parent=gene-CFSAN001082_RS45295;Dbxref=GenBank:WP_023254887.1;Name=WP_023254887.1;Ontology_term=GO:0005525;gbkey=CDS;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312217.1;locus_tag=CFSAN001082_RS45295;partial=true;product=EF-Tu/IF-2/RF-3 family GTPase;protein_id=WP_023254887.1;start_range=.,1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	746	940	.	+	.	ID=gene-CFSAN001082_RS45300;Name=bfd;gbkey=Gene;gene=bfd;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45300;old_locus_tag=CFSAN001082_21754
NZ_APAH01000460.1	Protein Homology	CDS	746	940	.	+	0	ID=cds-WP_000289082.1;Parent=gene-CFSAN001082_RS45300;Dbxref=GenBank:WP_000289082.1;Name=WP_000289082.1;gbkey=CDS;gene=bfd;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462348.1;locus_tag=CFSAN001082_RS45300;product=bacterioferritin-associated ferredoxin;protein_id=WP_000289082.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	1013	1489	.	+	.	ID=gene-CFSAN001082_RS45305;Name=bfr;gbkey=Gene;gene=bfr;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45305;old_locus_tag=CFSAN001082_21759
NZ_APAH01000460.1	Protein Homology	CDS	1013	1489	.	+	0	ID=cds-WP_000675530.1;Parent=gene-CFSAN001082_RS45305;Dbxref=GenBank:WP_000675530.1;Name=WP_000675530.1;Ontology_term=GO:0006879,GO:0004322,GO:0008199;gbkey=CDS;gene=bfr;go_function=ferroxidase activity|0004322||IEA,ferric iron binding|0008199||IEA;go_process=intracellular iron ion homeostasis|0006879||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462347.1;locus_tag=CFSAN001082_RS45305;product=bacterioferritin;protein_id=WP_000675530.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	1486	1953	.	-	.	ID=gene-CFSAN001082_RS45310;Name=hopD;gbkey=Gene;gene=hopD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45310;old_locus_tag=CFSAN001082_21764
NZ_APAH01000460.1	Protein Homology	CDS	1486	1953	.	-	0	ID=cds-WP_023254888.1;Parent=gene-CFSAN001082_RS45310;Dbxref=GenBank:WP_023254888.1;Name=WP_023254888.1;gbkey=CDS;gene=hopD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462346.1;locus_tag=CFSAN001082_RS45310;product=prepilin peptidase;protein_id=WP_023254888.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	2333	2644	.	+	.	ID=gene-CFSAN001082_RS45315;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45315;old_locus_tag=CFSAN001082_21769
NZ_APAH01000460.1	Protein Homology	CDS	2333	2644	.	+	0	ID=cds-WP_001181005.1;Parent=gene-CFSAN001082_RS45315;Dbxref=GenBank:WP_001181005.1;Name=WP_001181005.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsJ;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014268624.1;locus_tag=CFSAN001082_RS45315;product=30S ribosomal protein S10;protein_id=WP_001181005.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	2677	3306	.	+	.	ID=gene-CFSAN001082_RS45320;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45320;old_locus_tag=CFSAN001082_21774
NZ_APAH01000460.1	Protein Homology	CDS	2677	3306	.	+	0	ID=cds-WP_000579838.1;Parent=gene-CFSAN001082_RS45320;Dbxref=GenBank:WP_000579838.1;Name=WP_000579838.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000579825.1;locus_tag=CFSAN001082_RS45320;product=50S ribosomal protein L3;protein_id=WP_000579838.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	3317	3922	.	+	.	ID=gene-CFSAN001082_RS45325;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45325;old_locus_tag=CFSAN001082_21779
NZ_APAH01000460.1	Protein Homology	CDS	3317	3922	.	+	0	ID=cds-WP_000424395.1;Parent=gene-CFSAN001082_RS45325;Dbxref=GenBank:WP_000424395.1;Name=WP_000424395.1;Ontology_term=GO:0006412,GO:0003735,GO:0022625;gbkey=CDS;gene=rplD;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010304939.1;locus_tag=CFSAN001082_RS45325;product=50S ribosomal protein L4;protein_id=WP_000424395.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	3919	4221	.	+	.	ID=gene-CFSAN001082_RS45330;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45330;old_locus_tag=CFSAN001082_21784
NZ_APAH01000460.1	Protein Homology	CDS	3919	4221	.	+	0	ID=cds-WP_000617546.1;Parent=gene-CFSAN001082_RS45330;Dbxref=GenBank:WP_000617546.1;Name=WP_000617546.1;gbkey=CDS;gene=rplW;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007891652.1;locus_tag=CFSAN001082_RS45330;product=50S ribosomal protein L23;protein_id=WP_000617546.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	4239	5060	.	+	.	ID=gene-CFSAN001082_RS45335;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45335;old_locus_tag=CFSAN001082_21789
NZ_APAH01000460.1	Protein Homology	CDS	4239	5060	.	+	0	ID=cds-WP_000301869.1;Parent=gene-CFSAN001082_RS45335;Dbxref=GenBank:WP_000301869.1;Name=WP_000301869.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0016740,GO:0015934;gbkey=CDS;gene=rplB;go_component=large ribosomal subunit|0015934||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA,transferase activity|0016740||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001738551.1;locus_tag=CFSAN001082_RS45335;product=50S ribosomal protein L2;protein_id=WP_000301869.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	5077	5355	.	+	.	ID=gene-CFSAN001082_RS45340;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45340;old_locus_tag=CFSAN001082_21794
NZ_APAH01000460.1	Protein Homology	CDS	5077	5355	.	+	0	ID=cds-WP_001138115.1;Parent=gene-CFSAN001082_RS45340;Dbxref=GenBank:WP_001138115.1;Name=WP_001138115.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsS;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011148791.1;locus_tag=CFSAN001082_RS45340;product=30S ribosomal protein S19;protein_id=WP_001138115.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	5370	5702	.	+	.	ID=gene-CFSAN001082_RS45345;Name=rplV;gbkey=Gene;gene=rplV;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45345;old_locus_tag=CFSAN001082_21799
NZ_APAH01000460.1	Protein Homology	CDS	5370	5702	.	+	0	ID=cds-WP_000447529.1;Parent=gene-CFSAN001082_RS45345;Dbxref=GenBank:WP_000447529.1;Name=WP_000447529.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplV;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000447526.1;locus_tag=CFSAN001082_RS45345;product=50S ribosomal protein L22;protein_id=WP_000447529.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	5720	6421	.	+	.	ID=gene-CFSAN001082_RS45350;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45350;old_locus_tag=CFSAN001082_21804
NZ_APAH01000460.1	Protein Homology	CDS	5720	6421	.	+	0	ID=cds-WP_000529945.1;Parent=gene-CFSAN001082_RS45350;Dbxref=GenBank:WP_000529945.1;Name=WP_000529945.1;Ontology_term=GO:0006412,GO:0003735;gbkey=CDS;gene=rpsC;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742302.1;locus_tag=CFSAN001082_RS45350;product=30S ribosomal protein S3;protein_id=WP_000529945.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	6434	6844	.	+	.	ID=gene-CFSAN001082_RS45355;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45355;old_locus_tag=CFSAN001082_21809
NZ_APAH01000460.1	Protein Homology	CDS	6434	6844	.	+	0	ID=cds-WP_000941208.1;Parent=gene-CFSAN001082_RS45355;Dbxref=GenBank:WP_000941208.1;Name=WP_000941208.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843;gbkey=CDS;gene=rplP;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017805229.1;locus_tag=CFSAN001082_RS45355;product=50S ribosomal protein L16;protein_id=WP_000941208.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	6844	7035	.	+	.	ID=gene-CFSAN001082_RS45360;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45360;old_locus_tag=CFSAN001082_21814
NZ_APAH01000460.1	Protein Homology	CDS	6844	7035	.	+	0	ID=cds-WP_000644742.1;Parent=gene-CFSAN001082_RS45360;Dbxref=GenBank:WP_000644742.1;Name=WP_000644742.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000644743.1;locus_tag=CFSAN001082_RS45360;product=50S ribosomal protein L29;protein_id=WP_000644742.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	7035	7289	.	+	.	ID=gene-CFSAN001082_RS45365;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45365;old_locus_tag=CFSAN001082_21819
NZ_APAH01000460.1	Protein Homology	CDS	7035	7289	.	+	0	ID=cds-WP_000130101.1;Parent=gene-CFSAN001082_RS45365;Dbxref=GenBank:WP_000130101.1;Name=WP_000130101.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006817275.1;locus_tag=CFSAN001082_RS45365;product=30S ribosomal protein S17;protein_id=WP_000130101.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	7453	7824	.	+	.	ID=gene-CFSAN001082_RS45370;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45370;old_locus_tag=CFSAN001082_21824
NZ_APAH01000460.1	Protein Homology	CDS	7453	7824	.	+	0	ID=cds-WP_000613954.1;Parent=gene-CFSAN001082_RS45370;Dbxref=GenBank:WP_000613954.1;Name=WP_000613954.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplN;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012728338.1;locus_tag=CFSAN001082_RS45370;product=50S ribosomal protein L14;protein_id=WP_000613954.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	7835	8149	.	+	.	ID=gene-CFSAN001082_RS45375;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45375;old_locus_tag=CFSAN001082_21829
NZ_APAH01000460.1	Protein Homology	CDS	7835	8149	.	+	0	ID=cds-WP_000729185.1;Parent=gene-CFSAN001082_RS45375;Dbxref=GenBank:WP_000729185.1;Name=WP_000729185.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplX;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000729185.1;locus_tag=CFSAN001082_RS45375;product=50S ribosomal protein L24;protein_id=WP_000729185.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	8164	8703	.	+	.	ID=gene-CFSAN001082_RS45380;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45380;old_locus_tag=CFSAN001082_21834
NZ_APAH01000460.1	Protein Homology	CDS	8164	8703	.	+	0	ID=cds-WP_001096206.1;Parent=gene-CFSAN001082_RS45380;Dbxref=GenBank:WP_001096206.1;Name=WP_001096206.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001096198.1;locus_tag=CFSAN001082_RS45380;product=50S ribosomal protein L5;protein_id=WP_001096206.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	8718	9023	.	+	.	ID=gene-CFSAN001082_RS45385;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45385;old_locus_tag=CFSAN001082_21839
NZ_APAH01000460.1	Protein Homology	CDS	8718	9023	.	+	0	ID=cds-WP_001118932.1;Parent=gene-CFSAN001082_RS45385;Dbxref=GenBank:WP_001118932.1;Name=WP_001118932.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsN;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005599304.1;locus_tag=CFSAN001082_RS45385;product=30S ribosomal protein S14;protein_id=WP_001118932.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	9057	9449	.	+	.	ID=gene-CFSAN001082_RS45390;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45390;old_locus_tag=CFSAN001082_21844
NZ_APAH01000460.1	Protein Homology	CDS	9057	9449	.	+	0	ID=cds-WP_000062611.1;Parent=gene-CFSAN001082_RS45390;Dbxref=GenBank:WP_000062611.1;Name=WP_000062611.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsH;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011148781.1;locus_tag=CFSAN001082_RS45390;product=30S ribosomal protein S8;protein_id=WP_000062611.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	9462	9995	.	+	.	ID=gene-CFSAN001082_RS45395;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45395;old_locus_tag=CFSAN001082_21849
NZ_APAH01000460.1	Protein Homology	CDS	9462	9995	.	+	0	ID=cds-WP_000091939.1;Parent=gene-CFSAN001082_RS45395;Dbxref=GenBank:WP_000091939.1;Name=WP_000091939.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0005840;gbkey=CDS;gene=rplF;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003031129.1;locus_tag=CFSAN001082_RS45395;product=50S ribosomal protein L6;protein_id=WP_000091939.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	10005	10358	.	+	.	ID=gene-CFSAN001082_RS45400;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45400;old_locus_tag=CFSAN001082_21854
NZ_APAH01000460.1	Protein Homology	CDS	10005	10358	.	+	0	ID=cds-WP_000358956.1;Parent=gene-CFSAN001082_RS45400;Dbxref=GenBank:WP_000358956.1;Name=WP_000358956.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplR;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005970258.1;locus_tag=CFSAN001082_RS45400;product=50S ribosomal protein L18;protein_id=WP_000358956.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	10373	10876	.	+	.	ID=gene-CFSAN001082_RS45405;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45405;old_locus_tag=CFSAN001082_21859
NZ_APAH01000460.1	Protein Homology	CDS	10373	10876	.	+	0	ID=cds-WP_000940121.1;Parent=gene-CFSAN001082_RS45405;Dbxref=GenBank:WP_000940121.1;Name=WP_000940121.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsE;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004106339.1;locus_tag=CFSAN001082_RS45405;product=30S ribosomal protein S5;protein_id=WP_000940121.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	10880	11059	.	+	.	ID=gene-CFSAN001082_RS45410;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45410;old_locus_tag=CFSAN001082_21864
NZ_APAH01000460.1	Protein Homology	CDS	10880	11059	.	+	0	ID=cds-WP_001140434.1;Parent=gene-CFSAN001082_RS45410;Dbxref=GenBank:WP_001140434.1;Name=WP_001140434.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rpmD;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012147215.1;locus_tag=CFSAN001082_RS45410;product=50S ribosomal protein L30;protein_id=WP_001140434.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	11063	11497	.	+	.	ID=gene-CFSAN001082_RS45415;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45415;old_locus_tag=CFSAN001082_21869
NZ_APAH01000460.1	Protein Homology	CDS	11063	11497	.	+	0	ID=cds-WP_001238917.1;Parent=gene-CFSAN001082_RS45415;Dbxref=GenBank:WP_001238917.1;Name=WP_001238917.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplO;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011095501.1;locus_tag=CFSAN001082_RS45415;product=50S ribosomal protein L15;protein_id=WP_001238917.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	11505	12824	.	+	.	ID=gene-CFSAN001082_RS45420;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45420;old_locus_tag=CFSAN001082_21874
NZ_APAH01000460.1	Protein Homology	CDS	11505	12824	.	+	0	ID=cds-WP_023254889.1;Parent=gene-CFSAN001082_RS45420;Dbxref=GenBank:WP_023254889.1;Name=WP_023254889.1;Ontology_term=GO:0015031,GO:0043952,GO:0016020;gbkey=CDS;gene=secY;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004868351.1;locus_tag=CFSAN001082_RS45420;product=preprotein translocase subunit SecY;protein_id=WP_023254889.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	12856	12972	.	+	.	ID=gene-CFSAN001082_RS45425;Name=rpmJ;gbkey=Gene;gene=rpmJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45425;old_locus_tag=CFSAN001082_21879
NZ_APAH01000460.1	Protein Homology	CDS	12856	12972	.	+	0	ID=cds-WP_000868187.1;Parent=gene-CFSAN001082_RS45425;Dbxref=GenBank:WP_000868187.1;Name=WP_000868187.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmJ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020322760.1;locus_tag=CFSAN001082_RS45425;product=50S ribosomal protein L36;protein_id=WP_000868187.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	13119	13475	.	+	.	ID=gene-CFSAN001082_RS45430;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45430;old_locus_tag=CFSAN001082_21884
NZ_APAH01000460.1	Protein Homology	CDS	13119	13475	.	+	0	ID=cds-WP_000090780.1;Parent=gene-CFSAN001082_RS45430;Dbxref=GenBank:WP_000090780.1;Name=WP_000090780.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsM;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019935869.1;locus_tag=CFSAN001082_RS45430;product=30S ribosomal protein S13;protein_id=WP_000090780.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	13492	13881	.	+	.	ID=gene-CFSAN001082_RS45435;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45435;old_locus_tag=CFSAN001082_21889
NZ_APAH01000460.1	Protein Homology	CDS	13492	13881	.	+	0	ID=cds-WP_001029758.1;Parent=gene-CFSAN001082_RS45435;Dbxref=GenBank:WP_001029758.1;Name=WP_001029758.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001029758.1;locus_tag=CFSAN001082_RS45435;product=30S ribosomal protein S11;protein_id=WP_001029758.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	13915	14535	.	+	.	ID=gene-CFSAN001082_RS45440;Name=rpsD;gbkey=Gene;gene=rpsD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45440;old_locus_tag=CFSAN001082_21894
NZ_APAH01000460.1	Protein Homology	CDS	13915	14535	.	+	0	ID=cds-WP_000135226.1;Parent=gene-CFSAN001082_RS45440;Dbxref=GenBank:WP_000135226.1;Name=WP_000135226.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0015935;gbkey=CDS;gene=rpsD;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004410410.1;locus_tag=CFSAN001082_RS45440;product=30S ribosomal protein S4;protein_id=WP_000135226.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	14561	15550	.	+	.	ID=gene-CFSAN001082_RS45445;Name=CFSAN001082_RS45445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45445;old_locus_tag=CFSAN001082_21899
NZ_APAH01000460.1	Protein Homology	CDS	14561	15550	.	+	0	ID=cds-WP_001162094.1;Parent=gene-CFSAN001082_RS45445;Dbxref=GenBank:WP_001162094.1;Name=WP_001162094.1;Ontology_term=GO:0006351,GO:0003899;gbkey=CDS;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005970247.1;locus_tag=CFSAN001082_RS45445;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_001162094.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	15591	15974	.	+	.	ID=gene-CFSAN001082_RS45450;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45450;old_locus_tag=CFSAN001082_21904
NZ_APAH01000460.1	Protein Homology	CDS	15591	15974	.	+	0	ID=cds-WP_001216370.1;Parent=gene-CFSAN001082_RS45450;Dbxref=GenBank:WP_001216370.1;Name=WP_001216370.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462318.1;locus_tag=CFSAN001082_RS45450;product=50S ribosomal protein L17;protein_id=WP_001216370.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	16082	16450	.	+	.	ID=gene-CFSAN001082_RS45455;Name=CFSAN001082_RS45455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45455;old_locus_tag=CFSAN001082_21909
NZ_APAH01000460.1	Protein Homology	CDS	16082	16450	.	+	0	ID=cds-WP_023254890.1;Parent=gene-CFSAN001082_RS45455;Dbxref=GenBank:WP_023254890.1;Name=WP_023254890.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462317.1;locus_tag=CFSAN001082_RS45455;product=DUF1992 domain-containing protein;protein_id=WP_023254890.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	16461	16886	.	+	.	ID=gene-CFSAN001082_RS45460;Name=zntR;gbkey=Gene;gene=zntR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45460;old_locus_tag=CFSAN001082_21914
NZ_APAH01000460.1	Protein Homology	CDS	16461	16886	.	+	0	ID=cds-WP_000285585.1;Parent=gene-CFSAN001082_RS45460;Dbxref=GenBank:WP_000285585.1;Name=WP_000285585.1;Ontology_term=GO:0006355,GO:0003677,GO:0008270;gbkey=CDS;gene=zntR;go_function=DNA binding|0003677||IEA,zinc ion binding|0008270||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462316.1;locus_tag=CFSAN001082_RS45460;product=Zn(2+)-responsive transcriptional regulator;protein_id=WP_000285585.1;transl_table=11
NZ_APAH01000460.1	RefSeq	pseudogene	16944	17147	.	+	.	ID=gene-CFSAN001082_RS45465;Name=CFSAN001082_RS45465;end_range=17147,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS45465;old_locus_tag=CFSAN001082_21919;partial=true;pseudo=true
NZ_APAH01000460.1	Protein Homology	CDS	16944	17147	.	+	0	ID=cds-CFSAN001082_RS45465;Parent=gene-CFSAN001082_RS45465;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=17147,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588467.1;locus_tag=CFSAN001082_RS45465;partial=true;product=alternative ribosome-rescue factor A;pseudo=true;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	17149	17562	.	-	.	ID=gene-CFSAN001082_RS45470;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45470;old_locus_tag=CFSAN001082_21924
NZ_APAH01000460.1	Protein Homology	CDS	17149	17562	.	-	0	ID=cds-WP_000008119.1;Parent=gene-CFSAN001082_RS45470;Dbxref=GenBank:WP_000008119.1;Name=WP_000008119.1;gbkey=CDS;gene=mscL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462314.1;locus_tag=CFSAN001082_RS45470;product=large-conductance mechanosensitive channel protein MscL;protein_id=WP_000008119.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	17704	19080	.	-	.	ID=gene-CFSAN001082_RS45475;Name=trkA;gbkey=Gene;gene=trkA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45475;old_locus_tag=CFSAN001082_21929
NZ_APAH01000460.1	Protein Homology	CDS	17704	19080	.	-	0	ID=cds-WP_000691374.1;Parent=gene-CFSAN001082_RS45475;Dbxref=GenBank:WP_000691374.1;Name=WP_000691374.1;Ontology_term=GO:0006813,GO:0015079,GO:0016020;gbkey=CDS;gene=trkA;go_component=membrane|0016020||IEA;go_function=potassium ion transmembrane transporter activity|0015079||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004125888.1;locus_tag=CFSAN001082_RS45475;product=Trk system potassium transporter TrkA;protein_id=WP_000691374.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	19102	20391	.	-	.	ID=gene-CFSAN001082_RS45480;Name=rsmB;gbkey=Gene;gene=rsmB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45480;old_locus_tag=CFSAN001082_21934
NZ_APAH01000460.1	Protein Homology	CDS	19102	20391	.	-	0	ID=cds-WP_023254892.1;Parent=gene-CFSAN001082_RS45480;Dbxref=GenBank:WP_023254892.1;Name=WP_023254892.1;Ontology_term=GO:0001510,GO:0006355,GO:0006364,GO:0003723,GO:0008649;gbkey=CDS;gene=rsmB;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;go_process=RNA methylation|0001510||IEA,regulation of DNA-templated transcription|0006355||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462312.1;locus_tag=CFSAN001082_RS45480;product=16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;protein_id=WP_023254892.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	20443	21390	.	-	.	ID=gene-CFSAN001082_RS45485;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45485;old_locus_tag=CFSAN001082_21939
NZ_APAH01000460.1	Protein Homology	CDS	20443	21390	.	-	0	ID=cds-WP_001285174.1;Parent=gene-CFSAN001082_RS45485;Dbxref=GenBank:WP_001285174.1;Name=WP_001285174.1;Ontology_term=GO:0071951,GO:0004479,GO:0005737;gbkey=CDS;gene=fmt;go_component=cytoplasm|0005737||IEA;go_function=methionyl-tRNA formyltransferase activity|0004479||IEA;go_process=conversion of methionyl-tRNA to N-formyl-methionyl-tRNA|0071951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462311.1;locus_tag=CFSAN001082_RS45485;product=methionyl-tRNA formyltransferase;protein_id=WP_001285174.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	21406	21915	.	-	.	ID=gene-CFSAN001082_RS45490;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45490;old_locus_tag=CFSAN001082_21944
NZ_APAH01000460.1	Protein Homology	CDS	21406	21915	.	-	0	ID=cds-WP_000114987.1;Parent=gene-CFSAN001082_RS45490;Dbxref=GenBank:WP_000114987.1;Name=WP_000114987.1;Ontology_term=GO:0036211,GO:0042586;gbkey=CDS;gene=def;go_function=peptide deformylase activity|0042586||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462310.1;locus_tag=CFSAN001082_RS45490;product=peptide deformylase;protein_id=WP_000114987.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	22047	23171	.	+	.	ID=gene-CFSAN001082_RS45495;Name=dprA;gbkey=Gene;gene=dprA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45495;old_locus_tag=CFSAN001082_21949
NZ_APAH01000460.1	Protein Homology	CDS	22047	23171	.	+	0	ID=cds-WP_023254893.1;Parent=gene-CFSAN001082_RS45495;Dbxref=GenBank:WP_023254893.1;Name=WP_023254893.1;Ontology_term=GO:0009294;gbkey=CDS;gene=dprA;go_process=DNA-mediated transformation|0009294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462309.1;locus_tag=CFSAN001082_RS45495;product=DNA-protecting protein DprA;protein_id=WP_023254893.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	23143	23616	.	+	.	ID=gene-CFSAN001082_RS45500;Name=smg;gbkey=Gene;gene=smg;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45500;old_locus_tag=CFSAN001082_21954
NZ_APAH01000460.1	Protein Homology	CDS	23143	23616	.	+	0	ID=cds-WP_023254894.1;Parent=gene-CFSAN001082_RS45500;Dbxref=GenBank:WP_023254894.1;Name=WP_023254894.1;gbkey=CDS;gene=smg;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134083.1;locus_tag=CFSAN001082_RS45500;product=DUF494 family protein Smg;protein_id=WP_023254894.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	23643	24185	.	+	.	ID=gene-CFSAN001082_RS45505;Name=CFSAN001082_RS45505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45505;old_locus_tag=CFSAN001082_21959
NZ_APAH01000460.1	Protein Homology	CDS	23643	24185	.	+	0	ID=cds-WP_001129708.1;Parent=gene-CFSAN001082_RS45505;Dbxref=GenBank:WP_001129708.1;Name=WP_001129708.1;Ontology_term=GO:0006265,GO:0003677,GO:0003916,GO:0005694;gbkey=CDS;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462307.1;locus_tag=CFSAN001082_RS45505;product=DNA topoisomerase family protein;protein_id=WP_001129708.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	24190	24762	.	+	.	ID=gene-CFSAN001082_RS45510;Name=tsaC;gbkey=Gene;gene=tsaC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45510;old_locus_tag=CFSAN001082_21964
NZ_APAH01000460.1	Protein Homology	CDS	24190	24762	.	+	0	ID=cds-WP_001650846.1;Parent=gene-CFSAN001082_RS45510;Dbxref=GenBank:WP_001650846.1;Name=WP_001650846.1;Ontology_term=GO:0002949,GO:0003725,GO:0005524;gbkey=CDS;gene=tsaC;go_function=double-stranded RNA binding|0003725||IEA,ATP binding|0005524||IEA;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462306.1;locus_tag=CFSAN001082_RS45510;product=L-threonylcarbamoyladenylate synthase type 1 TsaC;protein_id=WP_001650846.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	24767	25585	.	+	.	ID=gene-CFSAN001082_RS45515;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45515;old_locus_tag=CFSAN001082_21969
NZ_APAH01000460.1	Protein Homology	CDS	24767	25585	.	+	0	ID=cds-WP_000451202.1;Parent=gene-CFSAN001082_RS45515;Dbxref=GenBank:WP_000451202.1;Name=WP_000451202.1;Ontology_term=GO:0019632,GO:0004764;gbkey=CDS;gene=aroE;go_function=shikimate 3-dehydrogenase (NADP+) activity|0004764||IEA;go_process=shikimate metabolic process|0019632||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462305.1;locus_tag=CFSAN001082_RS45515;product=shikimate dehydrogenase;protein_id=WP_000451202.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	25582	25839	.	+	.	ID=gene-CFSAN001082_RS45520;Name=CFSAN001082_RS45520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45520;old_locus_tag=CFSAN001082_21974
NZ_APAH01000460.1	Protein Homology	CDS	25582	25839	.	+	0	ID=cds-WP_001070576.1;Parent=gene-CFSAN001082_RS45520;Dbxref=GenBank:WP_001070576.1;Name=WP_001070576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462304.1;locus_tag=CFSAN001082_RS45520;product=DUF1488 domain-containing protein;protein_id=WP_001070576.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	25815	26369	.	-	.	ID=gene-CFSAN001082_RS45525;Name=CFSAN001082_RS45525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45525;old_locus_tag=CFSAN001082_21979
NZ_APAH01000460.1	Protein Homology	CDS	25815	26369	.	-	0	ID=cds-WP_001285635.1;Parent=gene-CFSAN001082_RS45525;Dbxref=GenBank:WP_001285635.1;Name=WP_001285635.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462303.1;locus_tag=CFSAN001082_RS45525;product=gamma carbonic anhydrase family protein;protein_id=WP_001285635.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	26483	26635	.	+	.	ID=gene-CFSAN001082_RS48610;Name=CFSAN001082_RS48610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS48610;old_locus_tag=CFSAN001082_21984
NZ_APAH01000460.1	GeneMarkS-2+	CDS	26483	26635	.	+	0	ID=cds-WP_000795911.1;Parent=gene-CFSAN001082_RS48610;Dbxref=GenBank:WP_000795911.1;Name=WP_000795911.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS48610;product=hypothetical protein;protein_id=WP_000795911.1;transl_table=11
NZ_APAH01000460.1	RefSeq	gene	26844	26974	.	+	.	ID=gene-CFSAN001082_RS45530;Name=CFSAN001082_RS45530;end_range=26974,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=CFSAN001082_RS45530;old_locus_tag=CFSAN001082_r21991;partial=true
NZ_APAH01000460.1	cmsearch	rRNA	26844	26974	.	+	.	ID=rna-CFSAN001082_RS45530;Parent=gene-CFSAN001082_RS45530;Dbxref=RFAM:RF00177;end_range=26974,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS45530;partial=true;product=16S ribosomal RNA
NZ_APAH01000460.1	cmsearch	exon	26844	26974	.	+	.	ID=exon-CFSAN001082_RS45530-1;Parent=rna-CFSAN001082_RS45530;Dbxref=RFAM:RF00177;end_range=26974,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=CFSAN001082_RS45530;partial=true;product=16S ribosomal RNA
##sequence-region NZ_APAH01000461.1 1 19654
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000461.1	RefSeq	region	1	19654	.	+	.	ID=NZ_APAH01000461.1:1..19654;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000461.1	RefSeq	gene	1	1279	.	-	.	ID=gene-CFSAN001082_RS45535;Name=CFSAN001082_RS45535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45535;old_locus_tag=CFSAN001082_21991;partial=true;start_range=.,1
NZ_APAH01000461.1	Protein Homology	CDS	1	1279	.	-	0	ID=cds-WP_024150337.1;Parent=gene-CFSAN001082_RS45535;Dbxref=GenBank:WP_024150337.1;Name=WP_024150337.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459860.1;locus_tag=CFSAN001082_RS45535;partial=true;product=PTS sugar transporter subunit IIC;protein_id=WP_024150337.1;start_range=.,1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	1562	2692	.	-	.	ID=gene-CFSAN001082_RS45540;Name=rlmC;gbkey=Gene;gene=rlmC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45540;old_locus_tag=CFSAN001082_21996
NZ_APAH01000461.1	Protein Homology	CDS	1562	2692	.	-	0	ID=cds-WP_023254896.1;Parent=gene-CFSAN001082_RS45540;Dbxref=GenBank:WP_023254896.1;Name=WP_023254896.1;Ontology_term=GO:0016070,GO:0008649;gbkey=CDS;gene=rlmC;go_function=rRNA methyltransferase activity|0008649||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459859.1;locus_tag=CFSAN001082_RS45540;product=23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;protein_id=WP_023254896.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	2735	3208	.	-	.	ID=gene-CFSAN001082_RS45545;Name=CFSAN001082_RS45545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45545;old_locus_tag=CFSAN001082_22001
NZ_APAH01000461.1	Protein Homology	CDS	2735	3208	.	-	0	ID=cds-WP_000505788.1;Parent=gene-CFSAN001082_RS45545;Dbxref=GenBank:WP_000505788.1;Name=WP_000505788.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459858.1;locus_tag=CFSAN001082_RS45545;product=YbjO family protein;protein_id=WP_000505788.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	3282	4127	.	-	.	ID=gene-CFSAN001082_RS45550;Name=potI;gbkey=Gene;gene=potI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45550;old_locus_tag=CFSAN001082_22006
NZ_APAH01000461.1	Protein Homology	CDS	3282	4127	.	-	0	ID=cds-WP_001061629.1;Parent=gene-CFSAN001082_RS45550;Dbxref=GenBank:WP_001061629.1;Name=WP_001061629.1;Ontology_term=GO:0055085;gbkey=CDS;gene=potI;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459857.1;locus_tag=CFSAN001082_RS45550;product=putrescine ABC transporter permease PotI;protein_id=WP_001061629.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	4124	5077	.	-	.	ID=gene-CFSAN001082_RS45555;Name=potH;gbkey=Gene;gene=potH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45555;old_locus_tag=CFSAN001082_22011
NZ_APAH01000461.1	Protein Homology	CDS	4124	5077	.	-	0	ID=cds-WP_000105453.1;Parent=gene-CFSAN001082_RS45555;Dbxref=GenBank:WP_000105453.1;Name=WP_000105453.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=potH;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459856.1;locus_tag=CFSAN001082_RS45555;product=putrescine ABC transporter permease PotH;protein_id=WP_000105453.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	5087	6220	.	-	.	ID=gene-CFSAN001082_RS45560;Name=potG;gbkey=Gene;gene=potG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45560;old_locus_tag=CFSAN001082_22016
NZ_APAH01000461.1	Protein Homology	CDS	5087	6220	.	-	0	ID=cds-WP_001000698.1;Parent=gene-CFSAN001082_RS45560;Dbxref=GenBank:WP_001000698.1;Name=WP_001000698.1;Ontology_term=GO:0015846,GO:0055085,GO:0005524,GO:0015417,GO:0022857,GO:0043190;gbkey=CDS;gene=potG;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type polyamine transporter activity|0015417||IEA,transmembrane transporter activity|0022857||IEA;go_process=polyamine transport|0015846||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000996010.1;locus_tag=CFSAN001082_RS45560;product=putrescine ABC transporter ATP-binding subunit PotG;protein_id=WP_001000698.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	6308	7420	.	-	.	ID=gene-CFSAN001082_RS45565;Name=potF;gbkey=Gene;gene=potF;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45565;old_locus_tag=CFSAN001082_22021
NZ_APAH01000461.1	Protein Homology	CDS	6308	7420	.	-	0	ID=cds-WP_000125769.1;Parent=gene-CFSAN001082_RS45565;Dbxref=GenBank:WP_000125769.1;Name=WP_000125769.1;Ontology_term=GO:0015846,GO:0019808,GO:0042597;gbkey=CDS;gene=potF;go_component=periplasmic space|0042597||IEA;go_function=polyamine binding|0019808||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459854.1;locus_tag=CFSAN001082_RS45565;product=spermidine/putrescine ABC transporter substrate-binding protein PotF;protein_id=WP_000125769.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	7769	8245	.	-	.	ID=gene-CFSAN001082_RS45570;Name=CFSAN001082_RS45570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45570;old_locus_tag=CFSAN001082_22026
NZ_APAH01000461.1	Protein Homology	CDS	7769	8245	.	-	0	ID=cds-WP_000624814.1;Parent=gene-CFSAN001082_RS45570;Dbxref=GenBank:WP_000624814.1;Name=WP_000624814.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459853.1;locus_tag=CFSAN001082_RS45570;product=YbjN domain-containing protein;protein_id=WP_000624814.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	8342	9244	.	-	.	ID=gene-CFSAN001082_RS45575;Name=rimK;gbkey=Gene;gene=rimK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45575;old_locus_tag=CFSAN001082_22031
NZ_APAH01000461.1	Protein Homology	CDS	8342	9244	.	-	0	ID=cds-WP_000684361.1;Parent=gene-CFSAN001082_RS45575;Dbxref=GenBank:WP_000684361.1;Name=WP_000684361.1;Ontology_term=GO:0036211,GO:0005524,GO:0046872;gbkey=CDS;gene=rimK;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459852.1;locus_tag=CFSAN001082_RS45575;product=30S ribosomal protein S6--L-glutamate ligase;protein_id=WP_000684361.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	9302	10024	.	-	.	ID=gene-CFSAN001082_RS45580;Name=nfsA;gbkey=Gene;gene=nfsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45580;old_locus_tag=CFSAN001082_22036
NZ_APAH01000461.1	Protein Homology	CDS	9302	10024	.	-	0	ID=cds-WP_020898587.1;Parent=gene-CFSAN001082_RS45580;Dbxref=GenBank:WP_020898587.1;Name=WP_020898587.1;gbkey=CDS;gene=nfsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459851.1;locus_tag=CFSAN001082_RS45580;product=nitroreductase NfsA;protein_id=WP_020898587.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	10008	10298	.	-	.	ID=gene-CFSAN001082_RS45585;Name=CFSAN001082_RS45585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45585;old_locus_tag=CFSAN001082_22041
NZ_APAH01000461.1	Protein Homology	CDS	10008	10298	.	-	0	ID=cds-WP_001259128.1;Parent=gene-CFSAN001082_RS45585;Dbxref=GenBank:WP_001259128.1;Name=WP_001259128.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459850.1;locus_tag=CFSAN001082_RS45585;product=YbjC family protein;protein_id=WP_001259128.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	10468	10731	.	+	.	ID=gene-CFSAN001082_RS45590;Name=CFSAN001082_RS45590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45590;old_locus_tag=CFSAN001082_22046
NZ_APAH01000461.1	Protein Homology	CDS	10468	10731	.	+	0	ID=cds-WP_000495513.1;Parent=gene-CFSAN001082_RS45590;Dbxref=GenBank:WP_000495513.1;Name=WP_000495513.1;Ontology_term=GO:0045454,GO:0009055,GO:0015035;gbkey=CDS;go_function=electron transfer activity|0009055||IEA,protein-disulfide reductase activity|0015035||IEA;go_process=cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459849.1;locus_tag=CFSAN001082_RS45590;product=GrxA family glutaredoxin;protein_id=WP_000495513.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	10763	11140	.	-	.	ID=gene-CFSAN001082_RS45595;Name=CFSAN001082_RS45595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45595;old_locus_tag=CFSAN001082_22051
NZ_APAH01000461.1	Protein Homology	CDS	10763	11140	.	-	0	ID=cds-WP_000680850.1;Parent=gene-CFSAN001082_RS45595;Dbxref=GenBank:WP_000680850.1;Name=WP_000680850.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459848.1;locus_tag=CFSAN001082_RS45595;product=inner membrane protein YbjM;protein_id=WP_000680850.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	11411	13096	.	+	.	ID=gene-CFSAN001082_RS45600;Name=CFSAN001082_RS45600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45600;old_locus_tag=CFSAN001082_22056
NZ_APAH01000461.1	Protein Homology	CDS	11411	13096	.	+	0	ID=cds-WP_001024853.1;Parent=gene-CFSAN001082_RS45600;Dbxref=GenBank:WP_001024853.1;Name=WP_001024853.1;Ontology_term=GO:0006813,GO:0008324;gbkey=CDS;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001024888.1;locus_tag=CFSAN001082_RS45600;product=aspartate:alanine antiporter;protein_id=WP_001024853.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	13213	13833	.	-	.	ID=gene-CFSAN001082_RS45605;Name=CFSAN001082_RS45605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45605;old_locus_tag=CFSAN001082_22061
NZ_APAH01000461.1	Protein Homology	CDS	13213	13833	.	-	0	ID=cds-WP_000661873.1;Parent=gene-CFSAN001082_RS45605;Dbxref=GenBank:WP_000661873.1;Name=WP_000661873.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459846.1;locus_tag=CFSAN001082_RS45605;product=TetR/AcrR family transcriptional regulator;protein_id=WP_000661873.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	14001	15212	.	+	.	ID=gene-CFSAN001082_RS45610;Name=CFSAN001082_RS45610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45610;old_locus_tag=CFSAN001082_22066
NZ_APAH01000461.1	Protein Homology	CDS	14001	15212	.	+	0	ID=cds-WP_000217420.1;Parent=gene-CFSAN001082_RS45610;Dbxref=GenBank:WP_000217420.1;Name=WP_000217420.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459845.1;locus_tag=CFSAN001082_RS45610;product=MFS transporter;protein_id=WP_000217420.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	15209	16024	.	+	.	ID=gene-CFSAN001082_RS45615;Name=CFSAN001082_RS45615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45615;old_locus_tag=CFSAN001082_22071
NZ_APAH01000461.1	Protein Homology	CDS	15209	16024	.	+	0	ID=cds-WP_023254897.1;Parent=gene-CFSAN001082_RS45615;Dbxref=GenBank:WP_023254897.1;Name=WP_023254897.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459844.1;locus_tag=CFSAN001082_RS45615;product=Cof-type HAD-IIB family hydrolase;protein_id=WP_023254897.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	16078	17310	.	-	.	ID=gene-CFSAN001082_RS45620;Name=CFSAN001082_RS45620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45620;old_locus_tag=CFSAN001082_22076
NZ_APAH01000461.1	Protein Homology	CDS	16078	17310	.	-	0	ID=cds-WP_001181284.1;Parent=gene-CFSAN001082_RS45620;Dbxref=GenBank:WP_001181284.1;Name=WP_001181284.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459843.1;locus_tag=CFSAN001082_RS45620;product=MFS transporter;protein_id=WP_001181284.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	17623	18231	.	+	.	ID=gene-CFSAN001082_RS45625;Name=ybjG;gbkey=Gene;gene=ybjG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45625;old_locus_tag=CFSAN001082_22081
NZ_APAH01000461.1	Protein Homology	CDS	17623	18231	.	+	0	ID=cds-WP_023181381.1;Parent=gene-CFSAN001082_RS45625;Dbxref=GenBank:WP_023181381.1;Name=WP_023181381.1;Ontology_term=GO:0050380,GO:0005886;gbkey=CDS;gene=ybjG;go_component=plasma membrane|0005886||IEA;go_function=undecaprenyl-diphosphatase activity|0050380||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459842.1;locus_tag=CFSAN001082_RS45625;product=undecaprenyl-diphosphate phosphatase;protein_id=WP_023181381.1;transl_table=11
NZ_APAH01000461.1	RefSeq	gene	18303	19061	.	+	.	ID=gene-CFSAN001082_RS45630;Name=deoR;gbkey=Gene;gene=deoR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45630;old_locus_tag=CFSAN001082_22086
NZ_APAH01000461.1	Protein Homology	CDS	18303	19061	.	+	0	ID=cds-WP_000450103.1;Parent=gene-CFSAN001082_RS45630;Dbxref=GenBank:WP_000450103.1;Name=WP_000450103.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=deoR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459841.1;locus_tag=CFSAN001082_RS45630;product=DNA-binding transcriptional repressor DeoR;protein_id=WP_000450103.1;transl_table=11
NZ_APAH01000461.1	RefSeq	pseudogene	19106	19654	.	-	.	ID=gene-CFSAN001082_RS45635;Name=CFSAN001082_RS45635;end_range=19654,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS45635;old_locus_tag=CFSAN001082_22091;partial=true;pseudo=true
NZ_APAH01000461.1	Protein Homology	CDS	19106	19654	.	-	0	ID=cds-CFSAN001082_RS45635;Parent=gene-CFSAN001082_RS45635;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=19654,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459840.1;locus_tag=CFSAN001082_RS45635;partial=true;product=D-alanyl-D-alanine carboxypeptidase;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000462.1 1 21759
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000462.1	RefSeq	region	1	21759	.	+	.	ID=NZ_APAH01000462.1:1..21759;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000462.1	RefSeq	gene	149	658	.	+	.	ID=gene-CFSAN001082_RS45640;Name=sulA;gbkey=Gene;gene=sulA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45640;old_locus_tag=CFSAN001082_22096
NZ_APAH01000462.1	Protein Homology	CDS	149	658	.	+	0	ID=cds-WP_000288732.1;Parent=gene-CFSAN001082_RS45640;Dbxref=GenBank:WP_000288732.1;Name=WP_000288732.1;Ontology_term=GO:0009432,GO:0051782,GO:0005515;gbkey=CDS;gene=sulA;go_function=protein binding|0005515||IEA;go_process=SOS response|0009432||IEA,negative regulation of cell division|0051782||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460045.1;locus_tag=CFSAN001082_RS45640;product=SOS-induced cell division inhibitor SulA;protein_id=WP_000288732.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	1015	2067	.	+	.	ID=gene-CFSAN001082_RS45645;Name=ompA;gbkey=Gene;gene=ompA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45645;old_locus_tag=CFSAN001082_22101
NZ_APAH01000462.1	Protein Homology	CDS	1015	2067	.	+	0	ID=cds-WP_001670727.1;Parent=gene-CFSAN001082_RS45645;Dbxref=GenBank:WP_001670727.1;Name=WP_001670727.1;gbkey=CDS;gene=ompA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460044.1;locus_tag=CFSAN001082_RS45645;product=porin OmpA;protein_id=WP_001670727.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	2139	2591	.	-	.	ID=gene-CFSAN001082_RS45650;Name=matP;gbkey=Gene;gene=matP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45650;old_locus_tag=CFSAN001082_22106
NZ_APAH01000462.1	Protein Homology	CDS	2139	2591	.	-	0	ID=cds-WP_000877172.1;Parent=gene-CFSAN001082_RS45650;Dbxref=GenBank:WP_000877172.1;Name=WP_000877172.1;Ontology_term=GO:0006355,GO:0043565;gbkey=CDS;gene=matP;go_function=sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460043.1;locus_tag=CFSAN001082_RS45650;product=macrodomain Ter protein MatP;protein_id=WP_000877172.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	2777	4537	.	+	.	ID=gene-CFSAN001082_RS45655;Name=CFSAN001082_RS45655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45655;old_locus_tag=CFSAN001082_22111
NZ_APAH01000462.1	Protein Homology	CDS	2777	4537	.	+	0	ID=cds-WP_023254899.1;Parent=gene-CFSAN001082_RS45655;Dbxref=GenBank:WP_023254899.1;Name=WP_023254899.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460042.1;locus_tag=CFSAN001082_RS45655;product=AAA family ATPase;protein_id=WP_023254899.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	4606	5124	.	+	.	ID=gene-CFSAN001082_RS45660;Name=fabA;gbkey=Gene;gene=fabA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45660;old_locus_tag=CFSAN001082_22116
NZ_APAH01000462.1	Protein Homology	CDS	4606	5124	.	+	0	ID=cds-WP_000227928.1;Parent=gene-CFSAN001082_RS45660;Dbxref=GenBank:WP_000227928.1;Name=WP_000227928.1;Ontology_term=GO:0006633,GO:0019171;gbkey=CDS;gene=fabA;go_function=(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity|0019171||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014915875.1;locus_tag=CFSAN001082_RS45660;product=bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase;protein_id=WP_000227928.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	5224	5391	.	-	.	ID=gene-CFSAN001082_RS45665;Name=rmf;gbkey=Gene;gene=rmf;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45665;old_locus_tag=CFSAN001082_22121
NZ_APAH01000462.1	Protein Homology	CDS	5224	5391	.	-	0	ID=cds-WP_001537784.1;Parent=gene-CFSAN001082_RS45665;Dbxref=GenBank:WP_001537784.1;Name=WP_001537784.1;Ontology_term=GO:0141014,GO:0043022;gbkey=CDS;gene=rmf;go_function=ribosome binding|0043022||IEA;go_process=ribosome hibernation|0141014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460040.1;locus_tag=CFSAN001082_RS45665;product=ribosome modulation factor;protein_id=WP_001537784.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	5647	6210	.	-	.	ID=gene-CFSAN001082_RS45670;Name=pqiC;gbkey=Gene;gene=pqiC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45670;old_locus_tag=CFSAN001082_22126
NZ_APAH01000462.1	Protein Homology	CDS	5647	6210	.	-	0	ID=cds-WP_000759136.1;Parent=gene-CFSAN001082_RS45670;Dbxref=GenBank:WP_000759136.1;Name=WP_000759136.1;gbkey=CDS;gene=pqiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460039.1;locus_tag=CFSAN001082_RS45670;product=membrane integrity-associated transporter subunit PqiC;protein_id=WP_000759136.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	6207	7847	.	-	.	ID=gene-CFSAN001082_RS45675;Name=pqiB;gbkey=Gene;gene=pqiB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45675;old_locus_tag=CFSAN001082_22131
NZ_APAH01000462.1	Protein Homology	CDS	6207	7847	.	-	0	ID=cds-WP_000433414.1;Parent=gene-CFSAN001082_RS45675;Dbxref=GenBank:WP_000433414.1;Name=WP_000433414.1;gbkey=CDS;gene=pqiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460038.1;locus_tag=CFSAN001082_RS45675;product=intermembrane transport protein PqiB;protein_id=WP_000433414.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	7852	9105	.	-	.	ID=gene-CFSAN001082_RS45680;Name=pqiA;gbkey=Gene;gene=pqiA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45680;old_locus_tag=CFSAN001082_22136
NZ_APAH01000462.1	Protein Homology	CDS	7852	9105	.	-	0	ID=cds-WP_023254900.1;Parent=gene-CFSAN001082_RS45680;Dbxref=GenBank:WP_023254900.1;Name=WP_023254900.1;gbkey=CDS;gene=pqiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460037.1;locus_tag=CFSAN001082_RS45680;product=membrane integrity-associated transporter subunit PqiA;protein_id=WP_023254900.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	9120	11027	.	-	.	ID=gene-CFSAN001082_RS45685;Name=CFSAN001082_RS45685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45685;old_locus_tag=CFSAN001082_22141
NZ_APAH01000462.1	Protein Homology	CDS	9120	11027	.	-	0	ID=cds-WP_000053051.1;Parent=gene-CFSAN001082_RS45685;Dbxref=GenBank:WP_000053051.1;Name=WP_000053051.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000053132.1;locus_tag=CFSAN001082_RS45685;product=ABC transporter ATP-binding protein;protein_id=WP_000053051.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	11040	13148	.	-	.	ID=gene-CFSAN001082_RS45690;Name=rlmKL;gbkey=Gene;gene=rlmKL;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45690;old_locus_tag=CFSAN001082_22146
NZ_APAH01000462.1	Protein Homology	CDS	11040	13148	.	-	0	ID=cds-WP_023254901.1;Parent=gene-CFSAN001082_RS45690;Dbxref=GenBank:WP_023254901.1;Name=WP_023254901.1;Ontology_term=GO:0031167,GO:0003723,GO:0008990;gbkey=CDS;gene=rlmKL;go_function=RNA binding|0003723||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460035.1;locus_tag=CFSAN001082_RS45690;product=bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL;protein_id=WP_023254901.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	13247	14356	.	+	.	ID=gene-CFSAN001082_RS45695;Name=CFSAN001082_RS45695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45695;old_locus_tag=CFSAN001082_22151
NZ_APAH01000462.1	Protein Homology	CDS	13247	14356	.	+	0	ID=cds-WP_000224073.1;Parent=gene-CFSAN001082_RS45695;Dbxref=GenBank:WP_000224073.1;Name=WP_000224073.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460034.1;locus_tag=CFSAN001082_RS45695;product=YcbX family protein;protein_id=WP_000224073.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	14353	14895	.	-	.	ID=gene-CFSAN001082_RS45700;Name=zapC;gbkey=Gene;gene=zapC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45700;old_locus_tag=CFSAN001082_22156
NZ_APAH01000462.1	Protein Homology	CDS	14353	14895	.	-	0	ID=cds-WP_001220671.1;Parent=gene-CFSAN001082_RS45700;Dbxref=GenBank:WP_001220671.1;Name=WP_001220671.1;gbkey=CDS;gene=zapC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460033.1;locus_tag=CFSAN001082_RS45700;product=cell division protein ZapC;protein_id=WP_001220671.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	15061	16071	.	-	.	ID=gene-CFSAN001082_RS45705;Name=pyrD;gbkey=Gene;gene=pyrD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45705;old_locus_tag=CFSAN001082_22161
NZ_APAH01000462.1	Protein Homology	CDS	15061	16071	.	-	0	ID=cds-WP_000291723.1;Parent=gene-CFSAN001082_RS45705;Dbxref=GenBank:WP_000291723.1;Name=WP_000291723.1;Ontology_term=GO:0006222,GO:0004152,GO:0016020;gbkey=CDS;gene=pyrD;go_component=membrane|0016020||IEA;go_function=dihydroorotate dehydrogenase activity|0004152||IEA;go_process=UMP biosynthetic process|0006222||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460032.1;locus_tag=CFSAN001082_RS45705;product=quinone-dependent dihydroorotate dehydrogenase;protein_id=WP_000291723.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	16279	18891	.	-	.	ID=gene-CFSAN001082_RS45710;Name=pepN;gbkey=Gene;gene=pepN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45710;old_locus_tag=CFSAN001082_22166
NZ_APAH01000462.1	Protein Homology	CDS	16279	18891	.	-	0	ID=cds-WP_023254902.1;Parent=gene-CFSAN001082_RS45710;Dbxref=GenBank:WP_023254902.1;Name=WP_023254902.1;Ontology_term=GO:0006508,GO:0004177,GO:0008237,GO:0008270;gbkey=CDS;gene=pepN;go_function=aminopeptidase activity|0004177||IEA,metallopeptidase activity|0008237||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000193787.1;locus_tag=CFSAN001082_RS45710;product=aminopeptidase N;protein_id=WP_023254902.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	19158	20360	.	+	.	ID=gene-CFSAN001082_RS45715;Name=pncB;gbkey=Gene;gene=pncB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45715;old_locus_tag=CFSAN001082_22171
NZ_APAH01000462.1	Protein Homology	CDS	19158	20360	.	+	0	ID=cds-WP_000191406.1;Parent=gene-CFSAN001082_RS45715;Dbxref=GenBank:WP_000191406.1;Name=WP_000191406.1;Ontology_term=GO:0009435,GO:0004516;gbkey=CDS;gene=pncB;go_function=nicotinate phosphoribosyltransferase activity|0004516||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459979.1;locus_tag=CFSAN001082_RS45715;product=nicotinate phosphoribosyltransferase;protein_id=WP_000191406.1;transl_table=11
NZ_APAH01000462.1	RefSeq	gene	20438	21759	.	-	.	ID=gene-CFSAN001082_RS45720;Name=CFSAN001082_RS45720;end_range=21759,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45720;old_locus_tag=CFSAN001082_22176;partial=true
NZ_APAH01000462.1	Protein Homology	CDS	20438	21759	.	-	2	ID=cds-WP_023254903.1;Parent=gene-CFSAN001082_RS45720;Dbxref=GenBank:WP_023254903.1;Name=WP_023254903.1;Ontology_term=GO:0006814,GO:0006865,GO:0005283,GO:0015293,GO:0016020;end_range=21759,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=amino acid:sodium symporter activity|0005283||IEA,symporter activity|0015293||IEA;go_process=sodium ion transport|0006814||IEA,amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459978.1;locus_tag=CFSAN001082_RS45720;partial=true;product=alanine/glycine:cation symporter family protein;protein_id=WP_023254903.1;transl_table=11
##sequence-region NZ_APAH01000463.1 1 6569
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000463.1	RefSeq	region	1	6569	.	+	.	ID=NZ_APAH01000463.1:1..6569;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000463.1	RefSeq	gene	74	190	.	+	.	ID=gene-CFSAN001082_RS0124065;Name=CFSAN001082_RS0124065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0124065
NZ_APAH01000463.1	Protein Homology	CDS	74	190	.	+	0	ID=cds-WP_001617301.1;Parent=gene-CFSAN001082_RS0124065;Dbxref=GenBank:WP_001617301.1;Name=WP_001617301.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_448342.1;locus_tag=CFSAN001082_RS0124065;product=hypothetical protein;protein_id=WP_001617301.1;transl_table=11
NZ_APAH01000463.1	RefSeq	gene	187	615	.	+	.	ID=gene-CFSAN001082_RS45725;Name=uspC;gbkey=Gene;gene=uspC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45725;old_locus_tag=CFSAN001082_22181
NZ_APAH01000463.1	Protein Homology	CDS	187	615	.	+	0	ID=cds-WP_000122606.1;Parent=gene-CFSAN001082_RS45725;Dbxref=GenBank:WP_000122606.1;Name=WP_000122606.1;gbkey=CDS;gene=uspC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460884.1;locus_tag=CFSAN001082_RS45725;product=universal stress protein UspC;protein_id=WP_000122606.1;transl_table=11
NZ_APAH01000463.1	RefSeq	gene	633	2054	.	-	.	ID=gene-CFSAN001082_RS45730;Name=otsA;gbkey=Gene;gene=otsA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45730;old_locus_tag=CFSAN001082_22186
NZ_APAH01000463.1	Protein Homology	CDS	633	2054	.	-	0	ID=cds-WP_000089042.1;Parent=gene-CFSAN001082_RS45730;Dbxref=GenBank:WP_000089042.1;Name=WP_000089042.1;Ontology_term=GO:0005992,GO:0003825;gbkey=CDS;gene=otsA;go_function=alpha%2Calpha-trehalose-phosphate synthase (UDP-forming) activity|0003825||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460885.1;locus_tag=CFSAN001082_RS45730;product=alpha%2Calpha-trehalose-phosphate synthase;protein_id=WP_000089042.1;transl_table=11
NZ_APAH01000463.1	RefSeq	gene	2029	2832	.	-	.	ID=gene-CFSAN001082_RS45735;Name=otsB;gbkey=Gene;gene=otsB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45735;old_locus_tag=CFSAN001082_22191
NZ_APAH01000463.1	Protein Homology	CDS	2029	2832	.	-	0	ID=cds-WP_000840114.1;Parent=gene-CFSAN001082_RS45735;Dbxref=GenBank:WP_000840114.1;Name=WP_000840114.1;Ontology_term=GO:0005992,GO:0004805;gbkey=CDS;gene=otsB;go_function=trehalose-phosphatase activity|0004805||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460886.1;locus_tag=CFSAN001082_RS45735;product=trehalose-phosphatase;protein_id=WP_000840114.1;transl_table=11
NZ_APAH01000463.1	RefSeq	pseudogene	3055	3236	.	-	.	ID=gene-CFSAN001082_RS47650;Name=araH;end_range=3236,.;gbkey=Gene;gene=araH;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47650;partial=true;pseudo=true
NZ_APAH01000463.1	Protein Homology	CDS	3055	3236	.	-	0	ID=cds-CFSAN001082_RS47650;Parent=gene-CFSAN001082_RS47650;Note=Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose%3B frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=3236,.;gbkey=CDS;gene=araH;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026162.2;locus_tag=CFSAN001082_RS47650;partial=true;product=L-arabinose ABC transporter permease AraH;pseudo=true;transl_table=11
NZ_APAH01000463.1	RefSeq	gene	3348	3905	.	-	.	ID=gene-CFSAN001082_RS45740;Name=CFSAN001082_RS45740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45740;old_locus_tag=CFSAN001082_22196
NZ_APAH01000463.1	Protein Homology	CDS	3348	3905	.	-	0	ID=cds-WP_023254904.1;Parent=gene-CFSAN001082_RS45740;Dbxref=GenBank:WP_023254904.1;Name=WP_023254904.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460887.1;locus_tag=CFSAN001082_RS45740;product=DJ-1/PfpI family protein;protein_id=WP_023254904.1;transl_table=11
NZ_APAH01000463.1	RefSeq	gene	4455	4958	.	+	.	ID=gene-CFSAN001082_RS45745;Name=CFSAN001082_RS45745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45745;old_locus_tag=CFSAN001082_22206
NZ_APAH01000463.1	Protein Homology	CDS	4455	4958	.	+	0	ID=cds-WP_000741707.1;Parent=gene-CFSAN001082_RS45745;Dbxref=GenBank:WP_000741707.1;Name=WP_000741707.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460888.1;locus_tag=CFSAN001082_RS45745;product=non-heme ferritin-like protein;protein_id=WP_000741707.1;transl_table=11
NZ_APAH01000463.1	RefSeq	gene	5137	5775	.	-	.	ID=gene-CFSAN001082_RS45750;Name=CFSAN001082_RS45750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45750;old_locus_tag=CFSAN001082_22211
NZ_APAH01000463.1	Protein Homology	CDS	5137	5775	.	-	0	ID=cds-WP_000684804.1;Parent=gene-CFSAN001082_RS45750;Dbxref=GenBank:WP_000684804.1;Name=WP_000684804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460889.1;locus_tag=CFSAN001082_RS45750;product=RpiB/LacA/LacB family sugar-phosphate isomerase;protein_id=WP_000684804.1;transl_table=11
NZ_APAH01000463.1	RefSeq	gene	6031	6366	.	+	.	ID=gene-CFSAN001082_RS45755;Name=CFSAN001082_RS45755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45755;old_locus_tag=CFSAN001082_22216
NZ_APAH01000463.1	Protein Homology	CDS	6031	6366	.	+	0	ID=cds-WP_000803229.1;Parent=gene-CFSAN001082_RS45755;Dbxref=GenBank:WP_000803229.1;Name=WP_000803229.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460890.1;locus_tag=CFSAN001082_RS45755;product=YecR-like lipofamily protein;protein_id=WP_000803229.1;transl_table=11
##sequence-region NZ_APAH01000464.1 1 6549
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000464.1	RefSeq	region	1	6549	.	+	.	ID=NZ_APAH01000464.1:1..6549;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000464.1	RefSeq	gene	120	824	.	-	.	ID=gene-CFSAN001082_RS45760;Name=CFSAN001082_RS45760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45760;old_locus_tag=CFSAN001082_22221
NZ_APAH01000464.1	Protein Homology	CDS	120	824	.	-	0	ID=cds-WP_000738619.1;Parent=gene-CFSAN001082_RS45760;Dbxref=GenBank:WP_000738619.1;Name=WP_000738619.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459025.1;locus_tag=CFSAN001082_RS45760;product=winged helix-turn-helix transcriptional regulator;protein_id=WP_000738619.1;transl_table=11
NZ_APAH01000464.1	RefSeq	gene	1105	4101	.	-	.	ID=gene-CFSAN001082_RS45765;Name=CFSAN001082_RS45765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45765;old_locus_tag=CFSAN001082_22226
NZ_APAH01000464.1	Protein Homology	CDS	1105	4101	.	-	0	ID=cds-WP_023254906.1;Parent=gene-CFSAN001082_RS45765;Dbxref=GenBank:WP_023254906.1;Name=WP_023254906.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459024.1;locus_tag=CFSAN001082_RS45765;product=hypothetical protein;protein_id=WP_023254906.1;transl_table=11
NZ_APAH01000464.1	RefSeq	gene	4194	6293	.	-	.	ID=gene-CFSAN001082_RS45770;Name=CFSAN001082_RS45770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45770;old_locus_tag=CFSAN001082_22231
NZ_APAH01000464.1	Protein Homology	CDS	4194	6293	.	-	0	ID=cds-WP_023254907.1;Parent=gene-CFSAN001082_RS45770;Dbxref=GenBank:WP_023254907.1;Name=WP_023254907.1;Ontology_term=GO:0005975;gbkey=CDS;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459023.1;locus_tag=CFSAN001082_RS45770;product=glycosyl hydrolase family 18 protein;protein_id=WP_023254907.1;transl_table=11
##sequence-region NZ_APAH01000465.1 1 18617
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000465.1	RefSeq	region	1	18617	.	+	.	ID=NZ_APAH01000465.1:1..18617;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000465.1	RefSeq	gene	81	698	.	+	.	ID=gene-CFSAN001082_RS45775;Name=CFSAN001082_RS45775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45775;old_locus_tag=CFSAN001082_22236
NZ_APAH01000465.1	Protein Homology	CDS	81	698	.	+	0	ID=cds-WP_000924334.1;Parent=gene-CFSAN001082_RS45775;Dbxref=GenBank:WP_000924334.1;Name=WP_000924334.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462638.1;locus_tag=CFSAN001082_RS45775;product=trimeric intracellular cation channel family protein;protein_id=WP_000924334.1;transl_table=11
NZ_APAH01000465.1	RefSeq	gene	695	2380	.	-	.	ID=gene-CFSAN001082_RS45780;Name=ligB;gbkey=Gene;gene=ligB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45780;old_locus_tag=CFSAN001082_22241
NZ_APAH01000465.1	Protein Homology	CDS	695	2380	.	-	0	ID=cds-WP_023254908.1;Parent=gene-CFSAN001082_RS45780;Dbxref=GenBank:WP_023254908.1;Name=WP_023254908.1;Ontology_term=GO:0006260,GO:0006281,GO:0003911;gbkey=CDS;gene=ligB;go_function=DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462639.1;locus_tag=CFSAN001082_RS45780;product=NAD-dependent DNA ligase LigB;protein_id=WP_023254908.1;transl_table=11
NZ_APAH01000465.1	RefSeq	gene	2637	3260	.	+	.	ID=gene-CFSAN001082_RS45785;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45785;old_locus_tag=CFSAN001082_22246
NZ_APAH01000465.1	Protein Homology	CDS	2637	3260	.	+	0	ID=cds-WP_023214559.1;Parent=gene-CFSAN001082_RS45785;Dbxref=GenBank:WP_023214559.1;Name=WP_023214559.1;Ontology_term=GO:0006163,GO:0004385;gbkey=CDS;gene=gmk;go_function=guanylate kinase activity|0004385||IEA;go_process=purine nucleotide metabolic process|0006163||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000046969.1;locus_tag=CFSAN001082_RS45785;product=guanylate kinase;protein_id=WP_023214559.1;transl_table=11
NZ_APAH01000465.1	RefSeq	gene	3315	3590	.	+	.	ID=gene-CFSAN001082_RS45790;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45790;old_locus_tag=CFSAN001082_22251
NZ_APAH01000465.1	Protein Homology	CDS	3315	3590	.	+	0	ID=cds-WP_000135058.1;Parent=gene-CFSAN001082_RS45790;Dbxref=GenBank:WP_000135058.1;Name=WP_000135058.1;Ontology_term=GO:0006351,GO:0003899;gbkey=CDS;gene=rpoZ;go_function=DNA-directed 5'-3' RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013511051.1;locus_tag=CFSAN001082_RS45790;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_000135058.1;transl_table=11
NZ_APAH01000465.1	RefSeq	gene	3609	5720	.	+	.	ID=gene-CFSAN001082_RS45795;Name=spoT;gbkey=Gene;gene=spoT;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45795;old_locus_tag=CFSAN001082_22256
NZ_APAH01000465.1	Protein Homology	CDS	3609	5720	.	+	0	ID=cds-WP_000280481.1;Parent=gene-CFSAN001082_RS45795;Dbxref=GenBank:WP_000280481.1;Name=WP_000280481.1;Ontology_term=GO:0015969,GO:0008728,GO:0008893;gbkey=CDS;gene=spoT;go_function=GTP diphosphokinase activity|0008728||IEA,guanosine-3'%2C5'-bis(diphosphate) 3'-diphosphatase activity|0008893||IEA;go_process=guanosine tetraphosphate metabolic process|0015969||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462642.1;locus_tag=CFSAN001082_RS45795;product=bifunctional GTP diphosphokinase/guanosine-3'%2C5'-bis pyrophosphate 3'-pyrophosphohydrolase;protein_id=WP_000280481.1;transl_table=11
NZ_APAH01000465.1	RefSeq	gene	5725	6414	.	+	.	ID=gene-CFSAN001082_RS45800;Name=trmH;gbkey=Gene;gene=trmH;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45800;old_locus_tag=CFSAN001082_22261
NZ_APAH01000465.1	Protein Homology	CDS	5725	6414	.	+	0	ID=cds-WP_023254909.1;Parent=gene-CFSAN001082_RS45800;Dbxref=GenBank:WP_023254909.1;Name=WP_023254909.1;Ontology_term=GO:0030488,GO:0141100;gbkey=CDS;gene=trmH;go_function=tRNA (guanine(18)-2'-O)-methyltransferase activity|0141100||IEA;go_process=tRNA methylation|0030488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462643.1;locus_tag=CFSAN001082_RS45800;product=tRNA (guanosine(18)-2'-O)-methyltransferase TrmH;protein_id=WP_023254909.1;transl_table=11
NZ_APAH01000465.1	RefSeq	gene	6420	8501	.	+	.	ID=gene-CFSAN001082_RS45805;Name=recG;gbkey=Gene;gene=recG;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45805;old_locus_tag=CFSAN001082_22266
NZ_APAH01000465.1	Protein Homology	CDS	6420	8501	.	+	0	ID=cds-WP_000016751.1;Parent=gene-CFSAN001082_RS45805;Dbxref=GenBank:WP_000016751.1;Name=WP_000016751.1;Ontology_term=GO:0006281,GO:0006310,GO:0003676,GO:0003678,GO:0005524;gbkey=CDS;gene=recG;go_function=nucleic acid binding|0003676||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462644.1;locus_tag=CFSAN001082_RS45805;product=ATP-dependent DNA helicase RecG;protein_id=WP_000016751.1;transl_table=11
NZ_APAH01000465.1	RefSeq	gene	8537	9742	.	-	.	ID=gene-CFSAN001082_RS45810;Name=gltS;gbkey=Gene;gene=gltS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45810;old_locus_tag=CFSAN001082_22271
NZ_APAH01000465.1	Protein Homology	CDS	8537	9742	.	-	0	ID=cds-WP_000462255.1;Parent=gene-CFSAN001082_RS45810;Dbxref=GenBank:WP_000462255.1;Name=WP_000462255.1;Ontology_term=GO:0015813,GO:0015501,GO:0016020;gbkey=CDS;gene=gltS;go_component=membrane|0016020||IEA;go_function=glutamate:sodium symporter activity|0015501||IEA;go_process=L-glutamate transmembrane transport|0015813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016507315.1;locus_tag=CFSAN001082_RS45810;product=sodium/glutamate symporter;protein_id=WP_000462255.1;transl_table=11
NZ_APAH01000465.1	RefSeq	gene	9970	11361	.	+	.	ID=gene-CFSAN001082_RS45815;Name=xanP;gbkey=Gene;gene=xanP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45815;old_locus_tag=CFSAN001082_22276
NZ_APAH01000465.1	Protein Homology	CDS	9970	11361	.	+	0	ID=cds-WP_000115428.1;Parent=gene-CFSAN001082_RS45815;Dbxref=GenBank:WP_000115428.1;Name=WP_000115428.1;gbkey=CDS;gene=xanP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462647.1;locus_tag=CFSAN001082_RS45815;product=xanthine/proton symporter XanP;protein_id=WP_000115428.1;transl_table=11
NZ_APAH01000465.1	RefSeq	gene	11482	13191	.	+	.	ID=gene-CFSAN001082_RS45820;Name=CFSAN001082_RS45820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45820;old_locus_tag=CFSAN001082_22281
NZ_APAH01000465.1	Protein Homology	CDS	11482	13191	.	+	0	ID=cds-WP_000766665.1;Parent=gene-CFSAN001082_RS45820;Dbxref=GenBank:WP_000766665.1;Name=WP_000766665.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462648.1;locus_tag=CFSAN001082_RS45820;product=AsmA family protein;protein_id=WP_000766665.1;transl_table=11
NZ_APAH01000465.1	RefSeq	gene	13294	15612	.	-	.	ID=gene-CFSAN001082_RS45825;Name=yicI;gbkey=Gene;gene=yicI;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45825;old_locus_tag=CFSAN001082_22286
NZ_APAH01000465.1	Protein Homology	CDS	13294	15612	.	-	0	ID=cds-WP_023254910.1;Parent=gene-CFSAN001082_RS45825;Dbxref=GenBank:WP_023254910.1;Name=WP_023254910.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=yicI;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462649.1;locus_tag=CFSAN001082_RS45825;product=alpha-xylosidase;protein_id=WP_023254910.1;transl_table=11
NZ_APAH01000465.1	RefSeq	gene	15624	17006	.	-	.	ID=gene-CFSAN001082_RS45830;Name=CFSAN001082_RS45830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45830;old_locus_tag=CFSAN001082_22291
NZ_APAH01000465.1	Protein Homology	CDS	15624	17006	.	-	0	ID=cds-WP_000834257.1;Parent=gene-CFSAN001082_RS45830;Dbxref=GenBank:WP_000834257.1;Name=WP_000834257.1;Ontology_term=GO:0006814,GO:0008643,GO:0015293,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=sodium ion transport|0006814||IEA,carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462650.1;locus_tag=CFSAN001082_RS45830;product=glycoside-pentoside-hexuronide family transporter;protein_id=WP_000834257.1;transl_table=11
NZ_APAH01000465.1	RefSeq	gene	17294	17388	.	+	.	ID=gene-CFSAN001082_RS0124070;Name=CFSAN001082_RS0124070;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS0124070
NZ_APAH01000465.1	tRNAscan-SE	tRNA	17294	17388	.	+	.	ID=rna-CFSAN001082_RS0124070;Parent=gene-CFSAN001082_RS0124070;anticodon=(pos:17328..17330);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS0124070;product=tRNA-Sec
NZ_APAH01000465.1	tRNAscan-SE	exon	17294	17388	.	+	.	ID=exon-CFSAN001082_RS0124070-1;Parent=rna-CFSAN001082_RS0124070;anticodon=(pos:17328..17330);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS0124070;product=tRNA-Sec
NZ_APAH01000465.1	RefSeq	pseudogene	17424	17763	.	-	.	ID=gene-CFSAN001082_RS48645;Name=CFSAN001082_RS48645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS48645;old_locus_tag=CFSAN001082_22296;partial=true;pseudo=true;start_range=.,17424
NZ_APAH01000465.1	Protein Homology	CDS	17424	17763	.	-	0	ID=cds-CFSAN001082_RS48645;Parent=gene-CFSAN001082_RS48645;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611920.1;locus_tag=CFSAN001082_RS48645;partial=true;product=transposase;pseudo=true;start_range=.,17424;transl_table=11
NZ_APAH01000465.1	RefSeq	pseudogene	18172	18282	.	+	.	ID=gene-CFSAN001082_RS49035;Name=CFSAN001082_RS49035;end_range=18282,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49035;old_locus_tag=CFSAN001082_22301;partial=true;pseudo=true
NZ_APAH01000465.1	Protein Homology	CDS	18172	18282	.	+	0	ID=cds-CFSAN001082_RS49035;Parent=gene-CFSAN001082_RS49035;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=18282,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015671526.1;locus_tag=CFSAN001082_RS49035;partial=true;product=transposase;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000466.1 1 1173
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000466.1	RefSeq	region	1	1173	.	+	.	ID=NZ_APAH01000466.1:1..1173;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000466.1	RefSeq	gene	141	217	.	-	.	ID=gene-CFSAN001082_RS45840;Name=CFSAN001082_RS45840;gbkey=Gene;gene_biotype=tRNA;locus_tag=CFSAN001082_RS45840;old_locus_tag=CFSAN001082_t22315
NZ_APAH01000466.1	tRNAscan-SE	tRNA	141	217	.	-	.	ID=rna-CFSAN001082_RS45840;Parent=gene-CFSAN001082_RS45840;anticodon=(pos:complement(181..183));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS45840;product=tRNA-Arg
NZ_APAH01000466.1	tRNAscan-SE	exon	141	217	.	-	.	ID=exon-CFSAN001082_RS45840-1;Parent=rna-CFSAN001082_RS45840;anticodon=(pos:complement(181..183));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=CFSAN001082_RS45840;product=tRNA-Arg
NZ_APAH01000466.1	RefSeq	gene	608	1165	.	-	.	ID=gene-CFSAN001082_RS45845;Name=pagC;gbkey=Gene;gene=pagC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45845;old_locus_tag=CFSAN001082_22308
NZ_APAH01000466.1	Protein Homology	CDS	608	1165	.	-	0	ID=cds-WP_000789471.1;Parent=gene-CFSAN001082_RS45845;Dbxref=GenBank:WP_000789471.1;Name=WP_000789471.1;gbkey=CDS;gene=pagC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460215.1;locus_tag=CFSAN001082_RS45845;product=virulence membrane protein PagC;protein_id=WP_000789471.1;transl_table=11
##sequence-region NZ_APAH01000467.1 1 250
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000467.1	RefSeq	region	1	250	.	+	.	ID=NZ_APAH01000467.1:1..250;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000467.1	RefSeq	pseudogene	1	195	.	-	.	ID=gene-CFSAN001082_RS45850;Name=CFSAN001082_RS45850;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS45850;old_locus_tag=CFSAN001082_22315;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000467.1	Protein Homology	CDS	1	195	.	-	0	ID=cds-CFSAN001082_RS45850;Parent=gene-CFSAN001082_RS45850;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000074132.1;locus_tag=CFSAN001082_RS45850;partial=true;product=SLC13 family permease;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000468.1 1 9710
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000468.1	RefSeq	region	1	9710	.	+	.	ID=NZ_APAH01000468.1:1..9710;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000468.1	RefSeq	gene	26	571	.	+	.	ID=gene-CFSAN001082_RS45855;Name=CFSAN001082_RS45855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45855;old_locus_tag=CFSAN001082_22320
NZ_APAH01000468.1	Protein Homology	CDS	26	571	.	+	0	ID=cds-WP_000482235.1;Parent=gene-CFSAN001082_RS45855;Dbxref=GenBank:WP_000482235.1;Name=WP_000482235.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463451.1;locus_tag=CFSAN001082_RS45855;product=fimbrial protein;protein_id=WP_000482235.1;transl_table=11
NZ_APAH01000468.1	RefSeq	gene	642	1325	.	+	.	ID=gene-CFSAN001082_RS45860;Name=sthA;gbkey=Gene;gene=sthA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45860;old_locus_tag=CFSAN001082_22325
NZ_APAH01000468.1	Protein Homology	CDS	642	1325	.	+	0	ID=cds-WP_000680522.1;Parent=gene-CFSAN001082_RS45860;Dbxref=GenBank:WP_000680522.1;Name=WP_000680522.1;gbkey=CDS;gene=sthA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463450.1;locus_tag=CFSAN001082_RS45860;product=fimbrial biogenesis chaperone SthA;protein_id=WP_000680522.1;transl_table=11
NZ_APAH01000468.1	RefSeq	gene	1371	3908	.	+	.	ID=gene-CFSAN001082_RS45865;Name=CFSAN001082_RS45865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45865;old_locus_tag=CFSAN001082_22330
NZ_APAH01000468.1	Protein Homology	CDS	1371	3908	.	+	0	ID=cds-WP_023254914.1;Parent=gene-CFSAN001082_RS45865;Dbxref=GenBank:WP_023254914.1;Name=WP_023254914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463449.1;locus_tag=CFSAN001082_RS45865;product=fimbrial outer membrane usher protein;protein_id=WP_023254914.1;transl_table=11
NZ_APAH01000468.1	RefSeq	gene	3926	4483	.	+	.	ID=gene-CFSAN001082_RS45870;Name=CFSAN001082_RS45870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45870;old_locus_tag=CFSAN001082_22335
NZ_APAH01000468.1	Protein Homology	CDS	3926	4483	.	+	0	ID=cds-WP_023254915.1;Parent=gene-CFSAN001082_RS45870;Dbxref=GenBank:WP_023254915.1;Name=WP_023254915.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463448.1;locus_tag=CFSAN001082_RS45870;product=fimbrial protein;protein_id=WP_023254915.1;transl_table=11
NZ_APAH01000468.1	RefSeq	gene	4525	5610	.	+	.	ID=gene-CFSAN001082_RS45875;Name=sthE;gbkey=Gene;gene=sthE;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45875;old_locus_tag=CFSAN001082_22340
NZ_APAH01000468.1	Protein Homology	CDS	4525	5610	.	+	0	ID=cds-WP_023205038.1;Parent=gene-CFSAN001082_RS45875;Dbxref=GenBank:WP_023205038.1;Name=WP_023205038.1;gbkey=CDS;gene=sthE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463447.1;locus_tag=CFSAN001082_RS45875;product=fimbrial major subunit SthE;protein_id=WP_023205038.1;transl_table=11
NZ_APAH01000468.1	RefSeq	gene	5668	7017	.	-	.	ID=gene-CFSAN001082_RS45880;Name=creD;gbkey=Gene;gene=creD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45880;old_locus_tag=CFSAN001082_22345
NZ_APAH01000468.1	Protein Homology	CDS	5668	7017	.	-	0	ID=cds-WP_000920390.1;Parent=gene-CFSAN001082_RS45880;Dbxref=GenBank:WP_000920390.1;Name=WP_000920390.1;gbkey=CDS;gene=creD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463446.1;locus_tag=CFSAN001082_RS45880;product=cell envelope integrity protein CreD;protein_id=WP_000920390.1;transl_table=11
NZ_APAH01000468.1	RefSeq	gene	7075	8499	.	-	.	ID=gene-CFSAN001082_RS45885;Name=creC;gbkey=Gene;gene=creC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45885;old_locus_tag=CFSAN001082_22350
NZ_APAH01000468.1	Protein Homology	CDS	7075	8499	.	-	0	ID=cds-WP_017441769.1;Parent=gene-CFSAN001082_RS45885;Dbxref=GenBank:WP_017441769.1;Name=WP_017441769.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=creC;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463445.1;locus_tag=CFSAN001082_RS45885;product=two-component system sensor histidine kinase CreC;protein_id=WP_017441769.1;transl_table=11
NZ_APAH01000468.1	RefSeq	gene	8499	9188	.	-	.	ID=gene-CFSAN001082_RS45890;Name=creB;gbkey=Gene;gene=creB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45890;old_locus_tag=CFSAN001082_22355
NZ_APAH01000468.1	Protein Homology	CDS	8499	9188	.	-	0	ID=cds-WP_001187046.1;Parent=gene-CFSAN001082_RS45890;Dbxref=GenBank:WP_001187046.1;Name=WP_001187046.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=creB;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463444.1;locus_tag=CFSAN001082_RS45890;product=two-component system response regulator CreB;protein_id=WP_001187046.1;transl_table=11
NZ_APAH01000468.1	RefSeq	gene	9201	9674	.	-	.	ID=gene-CFSAN001082_RS45895;Name=creA;gbkey=Gene;gene=creA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45895;old_locus_tag=CFSAN001082_22360
NZ_APAH01000468.1	Protein Homology	CDS	9201	9674	.	-	0	ID=cds-WP_000875811.1;Parent=gene-CFSAN001082_RS45895;Dbxref=GenBank:WP_000875811.1;Name=WP_000875811.1;gbkey=CDS;gene=creA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463443.1;locus_tag=CFSAN001082_RS45895;product=protein CreA;protein_id=WP_000875811.1;transl_table=11
##sequence-region NZ_APAH01000469.1 1 460
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000469.1	RefSeq	region	1	460	.	+	.	ID=NZ_APAH01000469.1:1..460;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000469.1	RefSeq	gene	2	460	.	+	.	ID=gene-CFSAN001082_RS45900;Name=CFSAN001082_RS45900;end_range=460,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45900;old_locus_tag=CFSAN001082_22365;partial=true
NZ_APAH01000469.1	Protein Homology	CDS	2	460	.	+	0	ID=cds-WP_023254916.1;Parent=gene-CFSAN001082_RS45900;Dbxref=GenBank:WP_023254916.1;Name=WP_023254916.1;Ontology_term=GO:0005515;end_range=460,.;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459433.1;locus_tag=CFSAN001082_RS45900;partial=true;product=tetratricopeptide repeat protein;protein_id=WP_023254916.1;transl_table=11
##sequence-region NZ_APAH01000470.1 1 36283
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000470.1	RefSeq	region	1	36283	.	+	.	ID=NZ_APAH01000470.1:1..36283;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000470.1	RefSeq	pseudogene	160	588	.	-	.	ID=gene-CFSAN001082_RS49040;Name=CFSAN001082_RS49040;end_range=588,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS49040;partial=true;pseudo=true
NZ_APAH01000470.1	Protein Homology	CDS	160	588	.	-	0	ID=cds-CFSAN001082_RS49040;Parent=gene-CFSAN001082_RS49040;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0015074,GO:0032196,GO:0003677;end_range=588,.;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA,transposition|0032196||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611947.1;locus_tag=CFSAN001082_RS49040;partial=true;product=transposase;pseudo=true;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	1054	3123	.	-	.	ID=gene-CFSAN001082_RS45905;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45905;old_locus_tag=CFSAN001082_22380
NZ_APAH01000470.1	Protein Homology	CDS	1054	3123	.	-	0	ID=cds-WP_001291745.1;Parent=gene-CFSAN001082_RS45905;Dbxref=GenBank:WP_001291745.1;Name=WP_001291745.1;Ontology_term=GO:0006426,GO:0000166,GO:0004820,GO:0005524,GO:0005737;gbkey=CDS;gene=glyS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glycine-tRNA ligase activity|0004820||IEA,ATP binding|0005524||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001291772.1;locus_tag=CFSAN001082_RS45905;product=glycine--tRNA ligase subunit beta;protein_id=WP_001291745.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	3133	4044	.	-	.	ID=gene-CFSAN001082_RS45910;Name=glyQ;gbkey=Gene;gene=glyQ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45910;old_locus_tag=CFSAN001082_22385
NZ_APAH01000470.1	Protein Homology	CDS	3133	4044	.	-	0	ID=cds-WP_001168551.1;Parent=gene-CFSAN001082_RS45910;Dbxref=GenBank:WP_001168551.1;Name=WP_001168551.1;Ontology_term=GO:0006426,GO:0000166,GO:0004820,GO:0005524,GO:0005737;gbkey=CDS;gene=glyQ;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glycine-tRNA ligase activity|0004820||IEA,ATP binding|0005524||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462556.1;locus_tag=CFSAN001082_RS45910;product=glycine--tRNA ligase subunit alpha;protein_id=WP_001168551.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	4183	4485	.	-	.	ID=gene-CFSAN001082_RS45915;Name=CFSAN001082_RS45915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45915;old_locus_tag=CFSAN001082_22390
NZ_APAH01000470.1	Protein Homology	CDS	4183	4485	.	-	0	ID=cds-WP_000605590.1;Parent=gene-CFSAN001082_RS45915;Dbxref=GenBank:WP_000605590.1;Name=WP_000605590.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462557.1;locus_tag=CFSAN001082_RS45915;product=YsaB family lipoprotein;protein_id=WP_000605590.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	4651	5646	.	+	.	ID=gene-CFSAN001082_RS45920;Name=CFSAN001082_RS45920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45920;old_locus_tag=CFSAN001082_22395
NZ_APAH01000470.1	Protein Homology	CDS	4651	5646	.	+	0	ID=cds-WP_001182584.1;Parent=gene-CFSAN001082_RS45920;Dbxref=GenBank:WP_001182584.1;Name=WP_001182584.1;Ontology_term=GO:0016413,GO:0016747;gbkey=CDS;go_function=O-acetyltransferase activity|0016413||IEA,acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462558.1;locus_tag=CFSAN001082_RS45920;product=acyltransferase;protein_id=WP_001182584.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	5669	6022	.	-	.	ID=gene-CFSAN001082_RS45925;Name=CFSAN001082_RS45925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45925;old_locus_tag=CFSAN001082_22400
NZ_APAH01000470.1	Protein Homology	CDS	5669	6022	.	-	0	ID=cds-WP_001635944.1;Parent=gene-CFSAN001082_RS45925;Dbxref=GenBank:WP_001635944.1;Name=WP_001635944.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462559.1;locus_tag=CFSAN001082_RS45925;product=YiaA/YiaB family protein;protein_id=WP_001635944.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	6197	7651	.	-	.	ID=gene-CFSAN001082_RS45930;Name=xylB;gbkey=Gene;gene=xylB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45930;old_locus_tag=CFSAN001082_22405
NZ_APAH01000470.1	Protein Homology	CDS	6197	7651	.	-	0	ID=cds-WP_000275322.1;Parent=gene-CFSAN001082_RS45930;Dbxref=GenBank:WP_000275322.1;Name=WP_000275322.1;Ontology_term=GO:0005997,GO:0004856;gbkey=CDS;gene=xylB;go_function=D-xylulokinase activity|0004856||IEA;go_process=xylulose metabolic process|0005997||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462560.1;locus_tag=CFSAN001082_RS45930;product=xylulokinase;protein_id=WP_000275322.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	7751	9073	.	-	.	ID=gene-CFSAN001082_RS45935;Name=xylA;gbkey=Gene;gene=xylA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45935;old_locus_tag=CFSAN001082_22410
NZ_APAH01000470.1	Protein Homology	CDS	7751	9073	.	-	0	ID=cds-WP_023254917.1;Parent=gene-CFSAN001082_RS45935;Dbxref=GenBank:WP_023254917.1;Name=WP_023254917.1;Ontology_term=GO:0042732,GO:0009045;gbkey=CDS;gene=xylA;go_function=xylose isomerase activity|0009045||IEA;go_process=D-xylose metabolic process|0042732||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462561.1;locus_tag=CFSAN001082_RS45935;product=xylose isomerase;protein_id=WP_023254917.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	9436	10614	.	+	.	ID=gene-CFSAN001082_RS45940;Name=xylR;gbkey=Gene;gene=xylR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45940;old_locus_tag=CFSAN001082_22415
NZ_APAH01000470.1	Protein Homology	CDS	9436	10614	.	+	0	ID=cds-WP_000459824.1;Parent=gene-CFSAN001082_RS45940;Dbxref=GenBank:WP_000459824.1;Name=WP_000459824.1;Note=D-xylose enhances binding of XylR to the xyl promoter and activates transcription.;gbkey=CDS;gene=xylR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462562.1;locus_tag=CFSAN001082_RS45940;product=D-xylose utilization transcriptional activator XylR;protein_id=WP_000459824.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	10675	11499	.	-	.	ID=gene-CFSAN001082_RS45945;Name=CFSAN001082_RS45945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45945;old_locus_tag=CFSAN001082_22420
NZ_APAH01000470.1	Protein Homology	CDS	10675	11499	.	-	0	ID=cds-WP_001575119.1;Parent=gene-CFSAN001082_RS45945;Dbxref=GenBank:WP_001575119.1;Name=WP_001575119.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462563.1;locus_tag=CFSAN001082_RS45945;product=protein bax;protein_id=WP_001575119.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	11815	13842	.	+	.	ID=gene-CFSAN001082_RS45950;Name=CFSAN001082_RS45950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45950;old_locus_tag=CFSAN001082_22425
NZ_APAH01000470.1	Protein Homology	CDS	11815	13842	.	+	0	ID=cds-WP_023254918.1;Parent=gene-CFSAN001082_RS45950;Dbxref=GenBank:WP_023254918.1;Name=WP_023254918.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462564.1;locus_tag=CFSAN001082_RS45950;product=alpha-amylase;protein_id=WP_023254918.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	14016	15266	.	+	.	ID=gene-CFSAN001082_RS45955;Name=avtA;gbkey=Gene;gene=avtA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45955;old_locus_tag=CFSAN001082_22430
NZ_APAH01000470.1	Protein Homology	CDS	14016	15266	.	+	0	ID=cds-WP_000144383.1;Parent=gene-CFSAN001082_RS45955;Dbxref=GenBank:WP_000144383.1;Name=WP_000144383.1;gbkey=CDS;gene=avtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462565.1;locus_tag=CFSAN001082_RS45955;product=valine--pyruvate transaminase;protein_id=WP_000144383.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	15303	15776	.	-	.	ID=gene-CFSAN001082_RS45960;Name=CFSAN001082_RS45960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45960;old_locus_tag=CFSAN001082_22435
NZ_APAH01000470.1	Protein Homology	CDS	15303	15776	.	-	0	ID=cds-WP_001078817.1;Parent=gene-CFSAN001082_RS45960;Dbxref=GenBank:WP_001078817.1;Name=WP_001078817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462566.1;locus_tag=CFSAN001082_RS45960;product=4Fe-4S dicluster domain-containing protein;protein_id=WP_001078817.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	15893	16693	.	-	.	ID=gene-CFSAN001082_RS45965;Name=yiaJ;gbkey=Gene;gene=yiaJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45965;old_locus_tag=CFSAN001082_22440
NZ_APAH01000470.1	Protein Homology	CDS	15893	16693	.	-	0	ID=cds-WP_000081338.1;Parent=gene-CFSAN001082_RS45965;Dbxref=GenBank:WP_000081338.1;Name=WP_000081338.1;gbkey=CDS;gene=yiaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462567.1;locus_tag=CFSAN001082_RS45965;product=IclR family transcriptional regulator YiaJ;protein_id=WP_000081338.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	16923	17921	.	+	.	ID=gene-CFSAN001082_RS45970;Name=yiaK;gbkey=Gene;gene=yiaK;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45970;old_locus_tag=CFSAN001082_22445
NZ_APAH01000470.1	Protein Homology	CDS	16923	17921	.	+	0	ID=cds-WP_000861182.1;Parent=gene-CFSAN001082_RS45970;Dbxref=GenBank:WP_000861182.1;Name=WP_000861182.1;Ontology_term=GO:0047559,GO:0070403;gbkey=CDS;gene=yiaK;go_function=3-dehydro-L-gulonate 2-dehydrogenase activity|0047559||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462568.1;locus_tag=CFSAN001082_RS45970;product=3-dehydro-L-gulonate 2-dehydrogenase;protein_id=WP_000861182.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	17933	18397	.	+	.	ID=gene-CFSAN001082_RS45975;Name=CFSAN001082_RS45975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45975;old_locus_tag=CFSAN001082_22450
NZ_APAH01000470.1	Protein Homology	CDS	17933	18397	.	+	0	ID=cds-WP_001650971.1;Parent=gene-CFSAN001082_RS45975;Dbxref=GenBank:WP_001650971.1;Name=WP_001650971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462569.1;locus_tag=CFSAN001082_RS45975;product=YhcH/YjgK/YiaL family protein;protein_id=WP_001650971.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	18421	19353	.	+	.	ID=gene-CFSAN001082_RS45980;Name=CFSAN001082_RS45980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45980;old_locus_tag=CFSAN001082_22455
NZ_APAH01000470.1	Protein Homology	CDS	18421	19353	.	+	0	ID=cds-WP_023254919.1;Parent=gene-CFSAN001082_RS45980;Dbxref=GenBank:WP_023254919.1;Name=WP_023254919.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462570.1;locus_tag=CFSAN001082_RS45980;product=DUF4862 family protein;protein_id=WP_023254919.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	19492	19965	.	+	.	ID=gene-CFSAN001082_RS45985;Name=yiaM;gbkey=Gene;gene=yiaM;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45985;old_locus_tag=CFSAN001082_22460
NZ_APAH01000470.1	Protein Homology	CDS	19492	19965	.	+	0	ID=cds-WP_000832313.1;Parent=gene-CFSAN001082_RS45985;Dbxref=GenBank:WP_000832313.1;Name=WP_000832313.1;Ontology_term=GO:0031317;gbkey=CDS;gene=yiaM;go_component=tripartite ATP-independent periplasmic transporter complex|0031317||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462571.1;locus_tag=CFSAN001082_RS45985;product=2%2C3-diketo-L-gulonate TRAP transporter small permease YiaM;protein_id=WP_000832313.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	19968	21245	.	+	.	ID=gene-CFSAN001082_RS45990;Name=yiaN;gbkey=Gene;gene=yiaN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45990;old_locus_tag=CFSAN001082_22465
NZ_APAH01000470.1	Protein Homology	CDS	19968	21245	.	+	0	ID=cds-WP_000301822.1;Parent=gene-CFSAN001082_RS45990;Dbxref=GenBank:WP_000301822.1;Name=WP_000301822.1;Ontology_term=GO:0031317;gbkey=CDS;gene=yiaN;go_component=tripartite ATP-independent periplasmic transporter complex|0031317||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462572.1;locus_tag=CFSAN001082_RS45990;product=2%2C3-diketo-L-gulonate TRAP transporter large permease YiaN;protein_id=WP_000301822.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	21257	22243	.	+	.	ID=gene-CFSAN001082_RS45995;Name=yiaO;gbkey=Gene;gene=yiaO;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS45995;old_locus_tag=CFSAN001082_22470
NZ_APAH01000470.1	Protein Homology	CDS	21257	22243	.	+	0	ID=cds-WP_000766337.1;Parent=gene-CFSAN001082_RS45995;Dbxref=GenBank:WP_000766337.1;Name=WP_000766337.1;gbkey=CDS;gene=yiaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462573.1;locus_tag=CFSAN001082_RS45995;product=2%2C3-diketo-L-gulonate TRAP transporter substrate-binding protein YiaO;protein_id=WP_000766337.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	22247	23743	.	+	.	ID=gene-CFSAN001082_RS46000;Name=CFSAN001082_RS46000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46000;old_locus_tag=CFSAN001082_22475
NZ_APAH01000470.1	Protein Homology	CDS	22247	23743	.	+	0	ID=cds-WP_023254920.1;Parent=gene-CFSAN001082_RS46000;Dbxref=GenBank:WP_023254920.1;Name=WP_023254920.1;Ontology_term=GO:0016310,GO:0005524,GO:0019200;gbkey=CDS;go_function=ATP binding|0005524||IEA,carbohydrate kinase activity|0019200||IEA;go_process=phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462574.1;locus_tag=CFSAN001082_RS46000;product=FGGY-family carbohydrate kinase;protein_id=WP_023254920.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	23740	24402	.	+	.	ID=gene-CFSAN001082_RS46005;Name=ulaD;gbkey=Gene;gene=ulaD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46005;old_locus_tag=CFSAN001082_22480
NZ_APAH01000470.1	Protein Homology	CDS	23740	24402	.	+	0	ID=cds-WP_023254921.1;Parent=gene-CFSAN001082_RS46005;Dbxref=GenBank:WP_023254921.1;Name=WP_023254921.1;gbkey=CDS;gene=ulaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462575.1;locus_tag=CFSAN001082_RS46005;product=3-keto-L-gulonate-6-phosphate decarboxylase UlaD;protein_id=WP_023254921.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	24395	25255	.	+	.	ID=gene-CFSAN001082_RS46010;Name=CFSAN001082_RS46010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46010;old_locus_tag=CFSAN001082_22485
NZ_APAH01000470.1	Protein Homology	CDS	24395	25255	.	+	0	ID=cds-WP_001244038.1;Parent=gene-CFSAN001082_RS46010;Dbxref=GenBank:WP_001244038.1;Name=WP_001244038.1;Ontology_term=GO:0005975,GO:0016861;gbkey=CDS;go_function=intramolecular oxidoreductase activity%2C interconverting aldoses and ketoses|0016861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462576.1;locus_tag=CFSAN001082_RS46010;product=L-ribulose-5-phosphate 3-epimerase;protein_id=WP_001244038.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	25249	25944	.	+	.	ID=gene-CFSAN001082_RS46015;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46015;old_locus_tag=CFSAN001082_22490
NZ_APAH01000470.1	Protein Homology	CDS	25249	25944	.	+	0	ID=cds-WP_000893169.1;Parent=gene-CFSAN001082_RS46015;Dbxref=GenBank:WP_000893169.1;Name=WP_000893169.1;Ontology_term=GO:0019568,GO:0008270,GO:0008742;gbkey=CDS;gene=araD;go_function=zinc ion binding|0008270||IEA,L-ribulose-phosphate 4-epimerase activity|0008742||IEA;go_process=arabinose catabolic process|0019568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462577.1;locus_tag=CFSAN001082_RS46015;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_000893169.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	26105	26920	.	-	.	ID=gene-CFSAN001082_RS46020;Name=CFSAN001082_RS46020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46020;old_locus_tag=CFSAN001082_22495
NZ_APAH01000470.1	Protein Homology	CDS	26105	26920	.	-	0	ID=cds-WP_023254922.1;Parent=gene-CFSAN001082_RS46020;Dbxref=GenBank:WP_023254922.1;Name=WP_023254922.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462578.1;locus_tag=CFSAN001082_RS46020;product=AraC family transcriptional regulator;protein_id=WP_023254922.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	27184	29139	.	+	.	ID=gene-CFSAN001082_RS46025;Name=CFSAN001082_RS46025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46025;old_locus_tag=CFSAN001082_22500
NZ_APAH01000470.1	Protein Homology	CDS	27184	29139	.	+	0	ID=cds-WP_023254923.1;Parent=gene-CFSAN001082_RS46025;Dbxref=GenBank:WP_023254923.1;Name=WP_023254923.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462579.1;locus_tag=CFSAN001082_RS46025;product=glycoside hydrolase family 127 protein;protein_id=WP_023254923.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	29369	30907	.	-	.	ID=gene-CFSAN001082_RS46030;Name=aldB;gbkey=Gene;gene=aldB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46030;old_locus_tag=CFSAN001082_22505
NZ_APAH01000470.1	Protein Homology	CDS	29369	30907	.	-	0	ID=cds-WP_000183989.1;Parent=gene-CFSAN001082_RS46030;Dbxref=GenBank:WP_000183989.1;Name=WP_000183989.1;gbkey=CDS;gene=aldB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462580.1;locus_tag=CFSAN001082_RS46030;product=aldehyde dehydrogenase AldB;protein_id=WP_000183989.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	31076	31957	.	+	.	ID=gene-CFSAN001082_RS46035;Name=CFSAN001082_RS46035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46035;old_locus_tag=CFSAN001082_22510
NZ_APAH01000470.1	Protein Homology	CDS	31076	31957	.	+	0	ID=cds-WP_001650978.1;Parent=gene-CFSAN001082_RS46035;Dbxref=GenBank:WP_001650978.1;Name=WP_001650978.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462581.1;locus_tag=CFSAN001082_RS46035;product=ROK family protein;protein_id=WP_001650978.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	32205	34055	.	-	.	ID=gene-CFSAN001082_RS46040;Name=selB;gbkey=Gene;gene=selB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46040;old_locus_tag=CFSAN001082_22515
NZ_APAH01000470.1	Protein Homology	CDS	32205	34055	.	-	0	ID=cds-WP_000582394.1;Parent=gene-CFSAN001082_RS46040;Dbxref=GenBank:WP_000582394.1;Name=WP_000582394.1;Ontology_term=GO:0001514,GO:0003723,GO:0003746,GO:0003924,GO:0005525,GO:0005737;gbkey=CDS;gene=selB;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,translation elongation factor activity|0003746||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=selenocysteine incorporation|0001514||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462582.1;locus_tag=CFSAN001082_RS46040;product=selenocysteine-specific translation elongation factor;protein_id=WP_000582394.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	34052	35443	.	-	.	ID=gene-CFSAN001082_RS46045;Name=selA;gbkey=Gene;gene=selA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46045;old_locus_tag=CFSAN001082_22520
NZ_APAH01000470.1	Protein Homology	CDS	34052	35443	.	-	0	ID=cds-WP_023254924.1;Parent=gene-CFSAN001082_RS46045;Dbxref=GenBank:WP_023254924.1;Name=WP_023254924.1;Ontology_term=GO:0001514,GO:0004125,GO:0005737;gbkey=CDS;gene=selA;go_component=cytoplasm|0005737||IEA;go_function=L-seryl-tRNA(Sec) selenium transferase activity|0004125||IEA;go_process=selenocysteine incorporation|0001514||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462583.1;locus_tag=CFSAN001082_RS46045;product=L-seryl-tRNA(Sec) selenium transferase;protein_id=WP_023254924.1;transl_table=11
NZ_APAH01000470.1	RefSeq	gene	35542	36150	.	-	.	ID=gene-CFSAN001082_RS46050;Name=CFSAN001082_RS46050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46050;old_locus_tag=CFSAN001082_22525
NZ_APAH01000470.1	Protein Homology	CDS	35542	36150	.	-	0	ID=cds-WP_000766681.1;Parent=gene-CFSAN001082_RS46050;Dbxref=GenBank:WP_000766681.1;Name=WP_000766681.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462584.1;locus_tag=CFSAN001082_RS46050;product=glutathione S-transferase;protein_id=WP_000766681.1;transl_table=11
##sequence-region NZ_APAH01000471.1 1 7285
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000471.1	RefSeq	region	1	7285	.	+	.	ID=NZ_APAH01000471.1:1..7285;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000471.1	RefSeq	gene	219	989	.	+	.	ID=gene-CFSAN001082_RS46060;Name=CFSAN001082_RS46060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46060;old_locus_tag=CFSAN001082_22535
NZ_APAH01000471.1	Protein Homology	CDS	219	989	.	+	0	ID=cds-WP_023254926.1;Parent=gene-CFSAN001082_RS46060;Dbxref=GenBank:WP_023254926.1;Name=WP_023254926.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459080.1;locus_tag=CFSAN001082_RS46060;product=electron transfer flavoprotein FixA;protein_id=WP_023254926.1;transl_table=11
NZ_APAH01000471.1	RefSeq	gene	1005	1946	.	+	.	ID=gene-CFSAN001082_RS46065;Name=CFSAN001082_RS46065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46065;old_locus_tag=CFSAN001082_22540
NZ_APAH01000471.1	Protein Homology	CDS	1005	1946	.	+	0	ID=cds-WP_001032202.1;Parent=gene-CFSAN001082_RS46065;Dbxref=GenBank:WP_001032202.1;Name=WP_001032202.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459081.1;locus_tag=CFSAN001082_RS46065;product=electron transfer flavoprotein subunit alpha/FixB family protein;protein_id=WP_001032202.1;transl_table=11
NZ_APAH01000471.1	RefSeq	gene	1996	3282	.	+	.	ID=gene-CFSAN001082_RS46070;Name=CFSAN001082_RS46070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46070;old_locus_tag=CFSAN001082_22545
NZ_APAH01000471.1	Protein Homology	CDS	1996	3282	.	+	0	ID=cds-WP_001287771.1;Parent=gene-CFSAN001082_RS46070;Dbxref=GenBank:WP_001287771.1;Name=WP_001287771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459082.1;locus_tag=CFSAN001082_RS46070;product=FAD-dependent oxidoreductase;protein_id=WP_001287771.1;transl_table=11
NZ_APAH01000471.1	RefSeq	gene	3279	3566	.	+	.	ID=gene-CFSAN001082_RS46075;Name=fixX;gbkey=Gene;gene=fixX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46075;old_locus_tag=CFSAN001082_22550
NZ_APAH01000471.1	Protein Homology	CDS	3279	3566	.	+	0	ID=cds-WP_000203737.1;Parent=gene-CFSAN001082_RS46075;Dbxref=GenBank:WP_000203737.1;Name=WP_000203737.1;gbkey=CDS;gene=fixX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459083.1;locus_tag=CFSAN001082_RS46075;product=ferredoxin-like protein FixX;protein_id=WP_000203737.1;transl_table=11
NZ_APAH01000471.1	RefSeq	gene	3713	5053	.	+	.	ID=gene-CFSAN001082_RS46080;Name=CFSAN001082_RS46080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46080;old_locus_tag=CFSAN001082_22555
NZ_APAH01000471.1	Protein Homology	CDS	3713	5053	.	+	0	ID=cds-WP_001187057.1;Parent=gene-CFSAN001082_RS46080;Dbxref=GenBank:WP_001187057.1;Name=WP_001187057.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459084.1;locus_tag=CFSAN001082_RS46080;product=MFS transporter;protein_id=WP_001187057.1;transl_table=11
NZ_APAH01000471.1	RefSeq	gene	5142	5372	.	+	.	ID=gene-CFSAN001082_RS46085;Name=CFSAN001082_RS46085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46085;old_locus_tag=CFSAN001082_22560
NZ_APAH01000471.1	Protein Homology	CDS	5142	5372	.	+	0	ID=cds-WP_001172089.1;Parent=gene-CFSAN001082_RS46085;Dbxref=GenBank:WP_001172089.1;Name=WP_001172089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459085.1;locus_tag=CFSAN001082_RS46085;product=YgdI/YgdR family lipoprotein;protein_id=WP_001172089.1;transl_table=11
NZ_APAH01000471.1	RefSeq	gene	5672	6088	.	+	.	ID=gene-CFSAN001082_RS46090;Name=CFSAN001082_RS46090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46090;old_locus_tag=CFSAN001082_22565
NZ_APAH01000471.1	Protein Homology	CDS	5672	6088	.	+	0	ID=cds-WP_161460226.1;Parent=gene-CFSAN001082_RS46090;Dbxref=GenBank:WP_161460226.1;Name=WP_161460226.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459086.1;locus_tag=CFSAN001082_RS46090;product=hypothetical protein;protein_id=WP_161460226.1;transl_table=11
NZ_APAH01000471.1	RefSeq	gene	6312	6602	.	-	.	ID=gene-CFSAN001082_RS46095;Name=srfN;gbkey=Gene;gene=srfN;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46095;old_locus_tag=CFSAN001082_22570
NZ_APAH01000471.1	Protein Homology	CDS	6312	6602	.	-	0	ID=cds-WP_000745961.1;Parent=gene-CFSAN001082_RS46095;Dbxref=GenBank:WP_000745961.1;Name=WP_000745961.1;gbkey=CDS;gene=srfN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459087.1;locus_tag=CFSAN001082_RS46095;product=DUF1471 family virulence protein SrfN;protein_id=WP_000745961.1;transl_table=11
##sequence-region NZ_APAH01000472.1 1 522
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000472.1	RefSeq	region	1	522	.	+	.	ID=NZ_APAH01000472.1:1..522;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000472.1	RefSeq	gene	439	522	.	+	.	ID=gene-CFSAN001082_RS49045;Name=CFSAN001082_RS49045;end_range=522,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49045;partial=true
NZ_APAH01000472.1	Protein Homology	CDS	439	522	.	+	0	ID=cds-WP_233618582.1;Parent=gene-CFSAN001082_RS49045;Dbxref=GenBank:WP_233618582.1;Name=WP_233618582.1;end_range=522,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461081.1;locus_tag=CFSAN001082_RS49045;partial=true;product=hypothetical protein;protein_id=WP_233618582.1;transl_table=11
##sequence-region NZ_APAH01000473.1 1 210
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000473.1	RefSeq	region	1	210	.	+	.	ID=NZ_APAH01000473.1:1..210;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
##sequence-region NZ_APAH01000474.1 1 303
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000474.1	RefSeq	region	1	303	.	+	.	ID=NZ_APAH01000474.1:1..303;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000474.1	RefSeq	pseudogene	1	243	.	-	.	ID=gene-CFSAN001082_RS46100;Name=CFSAN001082_RS46100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46100;old_locus_tag=CFSAN001082_22580;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000474.1	Protein Homology	CDS	1	243	.	-	0	ID=cds-CFSAN001082_RS46100;Parent=gene-CFSAN001082_RS46100;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_463122.1;locus_tag=CFSAN001082_RS46100;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000475.1 1 692
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000475.1	RefSeq	region	1	692	.	+	.	ID=NZ_APAH01000475.1:1..692;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000475.1	RefSeq	gene	1	692	.	-	.	ID=gene-CFSAN001082_RS0124110;Name=rfaJ;end_range=692,.;gbkey=Gene;gene=rfaJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS0124110;old_locus_tag=CFSAN001082_22585;partial=true;start_range=.,1
NZ_APAH01000475.1	Protein Homology	CDS	1	692	.	-	2	ID=cds-WP_031613109.1;Parent=gene-CFSAN001082_RS0124110;Dbxref=GenBank:WP_031613109.1;Name=WP_031613109.1;end_range=692,.;gbkey=CDS;gene=rfaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462617.1;locus_tag=CFSAN001082_RS0124110;partial=true;product=lipopolysaccharide 1%2C2-glucosyltransferase RfaJ;protein_id=WP_031613109.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000476.1 1 12296
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000476.1	RefSeq	region	1	12296	.	+	.	ID=NZ_APAH01000476.1:1..12296;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000476.1	RefSeq	gene	112	990	.	-	.	ID=gene-CFSAN001082_RS46105;Name=CFSAN001082_RS46105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46105;old_locus_tag=CFSAN001082_22590
NZ_APAH01000476.1	Protein Homology	CDS	112	990	.	-	0	ID=cds-WP_000174944.1;Parent=gene-CFSAN001082_RS46105;Dbxref=GenBank:WP_000174944.1;Name=WP_000174944.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461482.1;locus_tag=CFSAN001082_RS46105;product=alpha/beta hydrolase;protein_id=WP_000174944.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	1135	1938	.	-	.	ID=gene-CFSAN001082_RS46110;Name=suhB;gbkey=Gene;gene=suhB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46110;old_locus_tag=CFSAN001082_22595
NZ_APAH01000476.1	Protein Homology	CDS	1135	1938	.	-	0	ID=cds-WP_000553473.1;Parent=gene-CFSAN001082_RS46110;Dbxref=GenBank:WP_000553473.1;Name=WP_000553473.1;Ontology_term=GO:0046854,GO:0008934;gbkey=CDS;gene=suhB;go_function=inositol monophosphate 1-phosphatase activity|0008934||IEA;go_process=phosphatidylinositol phosphate biosynthetic process|0046854||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000553460.1;locus_tag=CFSAN001082_RS46110;product=inositol-1-monophosphatase;protein_id=WP_000553473.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	2057	2788	.	+	.	ID=gene-CFSAN001082_RS46115;Name=trmJ;gbkey=Gene;gene=trmJ;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46115;old_locus_tag=CFSAN001082_22600
NZ_APAH01000476.1	Protein Homology	CDS	2057	2788	.	+	0	ID=cds-WP_023254930.1;Parent=gene-CFSAN001082_RS46115;Dbxref=GenBank:WP_023254930.1;Name=WP_023254930.1;Ontology_term=GO:0006396,GO:0003723,GO:0008173;gbkey=CDS;gene=trmJ;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461480.1;locus_tag=CFSAN001082_RS46115;product=tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ;protein_id=WP_023254930.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	2948	3442	.	+	.	ID=gene-CFSAN001082_RS46120;Name=iscR;gbkey=Gene;gene=iscR;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46120;old_locus_tag=CFSAN001082_22605
NZ_APAH01000476.1	Protein Homology	CDS	2948	3442	.	+	0	ID=cds-WP_001241346.1;Parent=gene-CFSAN001082_RS46120;Dbxref=GenBank:WP_001241346.1;Name=WP_001241346.1;gbkey=CDS;gene=iscR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001241352.1;locus_tag=CFSAN001082_RS46120;product=Fe-S cluster assembly transcriptional regulator IscR;protein_id=WP_001241346.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	3623	4837	.	+	.	ID=gene-CFSAN001082_RS46125;Name=iscS;gbkey=Gene;gene=iscS;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46125;old_locus_tag=CFSAN001082_22610
NZ_APAH01000476.1	Protein Homology	CDS	3623	4837	.	+	0	ID=cds-WP_000775263.1;Parent=gene-CFSAN001082_RS46125;Dbxref=GenBank:WP_000775263.1;Name=WP_000775263.1;gbkey=CDS;gene=iscS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017459011.1;locus_tag=CFSAN001082_RS46125;product=cysteine desulfurase;protein_id=WP_000775263.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	4865	5251	.	+	.	ID=gene-CFSAN001082_RS46130;Name=iscU;gbkey=Gene;gene=iscU;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46130;old_locus_tag=CFSAN001082_22615
NZ_APAH01000476.1	Protein Homology	CDS	4865	5251	.	+	0	ID=cds-WP_000331704.1;Parent=gene-CFSAN001082_RS46130;Dbxref=GenBank:WP_000331704.1;Name=WP_000331704.1;Ontology_term=GO:0016226,GO:0005198,GO:0005506,GO:0051536;gbkey=CDS;gene=iscU;go_function=structural molecule activity|0005198||IEA,iron ion binding|0005506||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000331707.1;locus_tag=CFSAN001082_RS46130;product=Fe-S cluster assembly scaffold IscU;protein_id=WP_000331704.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	5280	5603	.	+	.	ID=gene-CFSAN001082_RS46135;Name=iscA;gbkey=Gene;gene=iscA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46135;old_locus_tag=CFSAN001082_22620
NZ_APAH01000476.1	Protein Homology	CDS	5280	5603	.	+	0	ID=cds-WP_000028952.1;Parent=gene-CFSAN001082_RS46135;Dbxref=GenBank:WP_000028952.1;Name=WP_000028952.1;gbkey=CDS;gene=iscA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461476.1;locus_tag=CFSAN001082_RS46135;product=iron-sulfur cluster assembly protein IscA;protein_id=WP_000028952.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	5799	6314	.	+	.	ID=gene-CFSAN001082_RS46140;Name=hscB;gbkey=Gene;gene=hscB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46140;old_locus_tag=CFSAN001082_22625
NZ_APAH01000476.1	Protein Homology	CDS	5799	6314	.	+	0	ID=cds-WP_023254931.1;Parent=gene-CFSAN001082_RS46140;Dbxref=GenBank:WP_023254931.1;Name=WP_023254931.1;Ontology_term=GO:0051604,GO:0051087;gbkey=CDS;gene=hscB;go_function=protein-folding chaperone binding|0051087||IEA;go_process=protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461475.1;locus_tag=CFSAN001082_RS46140;product=co-chaperone HscB;protein_id=WP_023254931.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	6327	8177	.	+	.	ID=gene-CFSAN001082_RS46145;Name=hscA;gbkey=Gene;gene=hscA;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46145;old_locus_tag=CFSAN001082_22630
NZ_APAH01000476.1	Protein Homology	CDS	6327	8177	.	+	0	ID=cds-WP_001196651.1;Parent=gene-CFSAN001082_RS46145;Dbxref=GenBank:WP_001196651.1;Name=WP_001196651.1;Ontology_term=GO:0006457,GO:0016226,GO:0005515,GO:0005524,GO:0016887;gbkey=CDS;gene=hscA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA,iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001559634.1;locus_tag=CFSAN001082_RS46145;product=Fe-S protein assembly chaperone HscA;protein_id=WP_001196651.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	8179	8514	.	+	.	ID=gene-CFSAN001082_RS46150;Name=fdx;gbkey=Gene;gene=fdx;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46150;old_locus_tag=CFSAN001082_22635
NZ_APAH01000476.1	Protein Homology	CDS	8179	8514	.	+	0	ID=cds-WP_001124466.1;Parent=gene-CFSAN001082_RS46150;Dbxref=GenBank:WP_001124466.1;Name=WP_001124466.1;Ontology_term=GO:0016226,GO:0009055,GO:0051537;gbkey=CDS;gene=fdx;go_function=electron transfer activity|0009055||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015683702.1;locus_tag=CFSAN001082_RS46150;product=ISC system 2Fe-2S type ferredoxin;protein_id=WP_001124466.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	8526	8726	.	+	.	ID=gene-CFSAN001082_RS46155;Name=iscX;gbkey=Gene;gene=iscX;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46155;old_locus_tag=CFSAN001082_22640
NZ_APAH01000476.1	Protein Homology	CDS	8526	8726	.	+	0	ID=cds-WP_000523621.1;Parent=gene-CFSAN001082_RS46155;Dbxref=GenBank:WP_000523621.1;Name=WP_000523621.1;Ontology_term=GO:0016226,GO:0005506;gbkey=CDS;gene=iscX;go_function=iron ion binding|0005506||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004104502.1;locus_tag=CFSAN001082_RS46155;product=Fe-S cluster assembly protein IscX;protein_id=WP_000523621.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	8904	10187	.	+	.	ID=gene-CFSAN001082_RS46160;Name=pepB;gbkey=Gene;gene=pepB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46160;old_locus_tag=CFSAN001082_22645
NZ_APAH01000476.1	Protein Homology	CDS	8904	10187	.	+	0	ID=cds-WP_023254932.1;Parent=gene-CFSAN001082_RS46160;Dbxref=GenBank:WP_023254932.1;Name=WP_023254932.1;Ontology_term=GO:0006508,GO:0019538,GO:0030145,GO:0070006;gbkey=CDS;gene=pepB;go_function=manganese ion binding|0030145||IEA,metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA,protein metabolic process|0019538||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461471.1;locus_tag=CFSAN001082_RS46160;product=aminopeptidase PepB;protein_id=WP_023254932.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	10297	11073	.	+	.	ID=gene-CFSAN001082_RS46165;Name=sseB;gbkey=Gene;gene=sseB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46165;old_locus_tag=CFSAN001082_22650
NZ_APAH01000476.1	Protein Homology	CDS	10297	11073	.	+	0	ID=cds-WP_023254933.1;Parent=gene-CFSAN001082_RS46165;Dbxref=GenBank:WP_023254933.1;Name=WP_023254933.1;gbkey=CDS;gene=sseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311415.2;locus_tag=CFSAN001082_RS46165;product=enhanced serine sensitivity protein SseB;protein_id=WP_023254933.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	11110	11226	.	-	.	ID=gene-CFSAN001082_RS49310;Name=timP;gbkey=Gene;gene=timP;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49310
NZ_APAH01000476.1	Protein Homology	CDS	11110	11226	.	-	0	ID=cds-WP_350028759.1;Parent=gene-CFSAN001082_RS49310;Dbxref=GenBank:WP_350028759.1;Name=WP_350028759.1;gbkey=CDS;gene=timP;inference=COORDINATES: protein motif:HMM:NF040796.1;locus_tag=CFSAN001082_RS49310;product=small toxic inner membrane protein TimP;protein_id=WP_350028759.1;transl_table=11
NZ_APAH01000476.1	RefSeq	gene	11642	12296	.	-	.	ID=gene-CFSAN001082_RS46170;Name=CFSAN001082_RS46170;end_range=12296,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46170;old_locus_tag=CFSAN001082_22660;partial=true
NZ_APAH01000476.1	Protein Homology	CDS	11642	12296	.	-	1	ID=cds-WP_023254934.1;Parent=gene-CFSAN001082_RS46170;Dbxref=GenBank:WP_023254934.1;Name=WP_023254934.1;end_range=12296,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000355299.1;locus_tag=CFSAN001082_RS46170;partial=true;product=DUF5066 family protein;protein_id=WP_023254934.1;transl_table=11
##sequence-region NZ_APAH01000477.1 1 414
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000477.1	RefSeq	region	1	414	.	+	.	ID=NZ_APAH01000477.1:1..414;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000477.1	RefSeq	pseudogene	1	197	.	-	.	ID=gene-CFSAN001082_RS46175;Name=ssaP;gbkey=Gene;gene=ssaP;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46175;old_locus_tag=CFSAN001082_22665;partial=true;pseudo=true;start_range=.,1
NZ_APAH01000477.1	Protein Homology	CDS	1	197	.	-	0	ID=cds-CFSAN001082_RS46175;Parent=gene-CFSAN001082_RS46175;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;gene=ssaP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460382.1;locus_tag=CFSAN001082_RS46175;partial=true;product=SPI-2 type III secretion system apparatus protein SsaP;pseudo=true;start_range=.,1;transl_table=11
NZ_APAH01000477.1	RefSeq	pseudogene	178	414	.	-	.	ID=gene-CFSAN001082_RS46180;Name=ssaO;end_range=414,.;gbkey=Gene;gene=ssaO;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS46180;old_locus_tag=CFSAN001082_22670;partial=true;pseudo=true
NZ_APAH01000477.1	Protein Homology	CDS	178	414	.	-	0	ID=cds-CFSAN001082_RS46180;Parent=gene-CFSAN001082_RS46180;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=414,.;gbkey=CDS;gene=ssaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460381.1;locus_tag=CFSAN001082_RS46180;partial=true;product=SPI-2 type III secretion system apparatus protein SsaO;pseudo=true;transl_table=11
##sequence-region NZ_APAH01000478.1 1 260
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000478.1	RefSeq	region	1	260	.	+	.	ID=NZ_APAH01000478.1:1..260;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000478.1	RefSeq	gene	1	214	.	+	.	ID=gene-CFSAN001082_RS49050;Name=CFSAN001082_RS49050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49050;old_locus_tag=CFSAN001082_22675;partial=true;start_range=.,1
NZ_APAH01000478.1	GeneMarkS-2+	CDS	1	214	.	+	1	ID=cds-WP_023254937.1;Parent=gene-CFSAN001082_RS49050;Dbxref=GenBank:WP_023254937.1;Name=WP_023254937.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=CFSAN001082_RS49050;partial=true;product=hypothetical protein;protein_id=WP_023254937.1;start_range=.,1;transl_table=11
##sequence-region NZ_APAH01000479.1 1 4889
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000479.1	RefSeq	region	1	4889	.	+	.	ID=NZ_APAH01000479.1:1..4889;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000479.1	RefSeq	gene	1	127	.	-	.	ID=gene-CFSAN001082_RS49315;Name=CFSAN001082_RS49315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49315;partial=true;start_range=.,1
NZ_APAH01000479.1	Protein Homology	CDS	1	127	.	-	0	ID=cds-WP_149022879.1;Parent=gene-CFSAN001082_RS49315;Dbxref=GenBank:WP_149022879.1;Name=WP_149022879.1;Ontology_term=GO:0042546;gbkey=CDS;go_process=cell wall biogenesis|0042546||IEA;inference=COORDINATES: protein motif:HMM:NF020904.6;locus_tag=CFSAN001082_RS49315;partial=true;product=SMI1/KNR4 family protein;protein_id=WP_149022879.1;start_range=.,1;transl_table=11
NZ_APAH01000479.1	RefSeq	gene	141	407	.	-	.	ID=gene-CFSAN001082_RS49095;Name=CFSAN001082_RS49095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS49095
NZ_APAH01000479.1	Protein Homology	CDS	141	407	.	-	0	ID=cds-WP_272944499.1;Parent=gene-CFSAN001082_RS49095;Dbxref=GenBank:WP_272944499.1;Name=WP_272944499.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF025771.6;locus_tag=CFSAN001082_RS49095;product=HNH endonuclease;protein_id=WP_272944499.1;transl_table=11
NZ_APAH01000479.1	RefSeq	pseudogene	522	1568	.	-	.	ID=gene-CFSAN001082_RS47685;Name=CFSAN001082_RS47685;end_range=1568,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS47685;old_locus_tag=CFSAN001082_22680;partial=true;pseudo=true;start_range=.,522
NZ_APAH01000479.1	Protein Homology	CDS	522	1568	.	-	0	ID=cds-CFSAN001082_RS47685;Parent=gene-CFSAN001082_RS47685;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1568,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459289.1;locus_tag=CFSAN001082_RS47685;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;start_range=.,522;transl_table=11
NZ_APAH01000479.1	RefSeq	gene	1624	1881	.	+	.	ID=gene-CFSAN001082_RS46190;Name=CFSAN001082_RS46190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46190;old_locus_tag=CFSAN001082_22685
NZ_APAH01000479.1	Protein Homology	CDS	1624	1881	.	+	0	ID=cds-WP_023181790.1;Parent=gene-CFSAN001082_RS46190;Dbxref=GenBank:WP_023181790.1;Name=WP_023181790.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000994230.1;locus_tag=CFSAN001082_RS46190;product=SymE family type I addiction module toxin;protein_id=WP_023181790.1;transl_table=11
NZ_APAH01000479.1	RefSeq	gene	1945	2283	.	-	.	ID=gene-CFSAN001082_RS46195;Name=CFSAN001082_RS46195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46195;old_locus_tag=CFSAN001082_22690
NZ_APAH01000479.1	Protein Homology	CDS	1945	2283	.	-	0	ID=cds-WP_023181791.1;Parent=gene-CFSAN001082_RS46195;Dbxref=GenBank:WP_023181791.1;Name=WP_023181791.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000382983.1;locus_tag=CFSAN001082_RS46195;product=hypothetical protein;protein_id=WP_023181791.1;transl_table=11
NZ_APAH01000479.1	RefSeq	pseudogene	2273	4411	.	-	.	ID=gene-CFSAN001082_RS0124130;Name=CFSAN001082_RS0124130;end_range=4411,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=CFSAN001082_RS0124130;old_locus_tag=CFSAN001082_22695;partial=true;pseudo=true
NZ_APAH01000479.1	Protein Homology	CDS	2273	4411	.	-	0	ID=cds-CFSAN001082_RS0124130;Parent=gene-CFSAN001082_RS0124130;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4411,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001601611.1;locus_tag=CFSAN001082_RS0124130;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;transl_table=11
NZ_APAH01000479.1	RefSeq	gene	4616	4849	.	+	.	ID=gene-CFSAN001082_RS46200;Name=CFSAN001082_RS46200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46200;old_locus_tag=CFSAN001082_22700
NZ_APAH01000479.1	Protein Homology	CDS	4616	4849	.	+	0	ID=cds-WP_000035941.1;Parent=gene-CFSAN001082_RS46200;Dbxref=GenBank:WP_000035941.1;Name=WP_000035941.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001532831.1;locus_tag=CFSAN001082_RS46200;product=hypothetical protein;protein_id=WP_000035941.1;transl_table=11
##sequence-region NZ_APAH01000480.1 1 3917
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1194156
NZ_APAH01000480.1	RefSeq	region	1	3917	.	+	.	ID=NZ_APAH01000480.1:1..3917;Dbxref=taxon:1194156;collection-date=31-May-1972;country=Egypt;gbkey=Src;genome=genomic;isolation-source=bone meal;mol_type=genomic DNA;serovar=Havana;strain=CFSAN001082;sub-species=enterica
NZ_APAH01000480.1	RefSeq	gene	1	1584	.	+	.	ID=gene-CFSAN001082_RS46205;Name=dpiB;gbkey=Gene;gene=dpiB;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46205;old_locus_tag=CFSAN001082_22705;partial=true;start_range=.,1
NZ_APAH01000480.1	Protein Homology	CDS	1	1584	.	+	0	ID=cds-WP_031613119.1;Parent=gene-CFSAN001082_RS46205;Dbxref=GenBank:WP_031613119.1;Name=WP_031613119.1;Ontology_term=GO:0000160,GO:0000155;gbkey=CDS;gene=dpiB;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459617.1;locus_tag=CFSAN001082_RS46205;partial=true;product=sensor histidine kinase DpiB;protein_id=WP_031613119.1;start_range=.,1;transl_table=11
NZ_APAH01000480.1	RefSeq	gene	1553	2233	.	+	.	ID=gene-CFSAN001082_RS46210;Name=dpiA;gbkey=Gene;gene=dpiA;gene_biotype=protein_coding;gene_synonym=citB;locus_tag=CFSAN001082_RS46210;old_locus_tag=CFSAN001082_22710
NZ_APAH01000480.1	Protein Homology	CDS	1553	2233	.	+	0	ID=cds-WP_000138779.1;Parent=gene-CFSAN001082_RS46210;Dbxref=GenBank:WP_000138779.1;Name=WP_000138779.1;gbkey=CDS;gene=dpiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459618.1;locus_tag=CFSAN001082_RS46210;product=two-component response regulator DpiA;protein_id=WP_000138779.1;transl_table=11
NZ_APAH01000480.1	RefSeq	gene	2287	3672	.	-	.	ID=gene-CFSAN001082_RS46215;Name=dcuC;gbkey=Gene;gene=dcuC;gene_biotype=protein_coding;locus_tag=CFSAN001082_RS46215;old_locus_tag=CFSAN001082_22715
NZ_APAH01000480.1	Protein Homology	CDS	2287	3672	.	-	0	ID=cds-WP_000958619.1;Parent=gene-CFSAN001082_RS46215;Dbxref=GenBank:WP_000958619.1;Name=WP_000958619.1;Ontology_term=GO:0015740,GO:0015556;gbkey=CDS;gene=dcuC;go_function=C4-dicarboxylate transmembrane transporter activity|0015556||IEA;go_process=C4-dicarboxylate transport|0015740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459619.1;locus_tag=CFSAN001082_RS46215;product=anaerobic C4-dicarboxylate transporter DcuC;protein_id=WP_000958619.1;transl_table=11
###