##gff-version 3 #!gff-spec-version 1.21 #!processor NCBI annotwriter #!genome-build ASM62709v1 #!genome-build-accession NCBI_Assembly:GCF_000627095.1 #!annotation-date 06/14/2025 10:00:58 #!annotation-source NCBI RefSeq GCF_000627095.1-RS_2025_06_14 ##sequence-region NZ_JJLH01000001.1 1 160394 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000001.1 RefSeq region 1 160394 . + . ID=NZ_JJLH01000001.1:1..160394;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000001.1 RefSeq gene 204 1184 . + . ID=gene-AD39_RS23225;Name=AD39_RS23225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS23225;old_locus_tag=AD39_0001 NZ_JJLH01000001.1 Protein Homology CDS 204 1184 . + 0 ID=cds-WP_000399648.1;Parent=gene-AD39_RS23225;Dbxref=GenBank:WP_000399648.1;Name=WP_000399648.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904434.1;locus_tag=AD39_RS23225;product=IS110-like element IS621 family transposase;protein_id=WP_000399648.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 1376 2152 . - . ID=gene-AD39_RS23220;Name=yaaA;gbkey=Gene;gene=yaaA;gene_biotype=protein_coding;locus_tag=AD39_RS23220;old_locus_tag=AD39_0002 NZ_JJLH01000001.1 Protein Homology CDS 1376 2152 . - 0 ID=cds-WP_000906214.1;Parent=gene-AD39_RS23220;Dbxref=GenBank:WP_000906214.1;Name=WP_000906214.1;gbkey=CDS;gene=yaaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308033.1;locus_tag=AD39_RS23220;product=peroxide stress protein YaaA;protein_id=WP_000906214.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 2222 3652 . - . ID=gene-AD39_RS23215;Name=yaaJ;gbkey=Gene;gene=yaaJ;gene_biotype=protein_coding;locus_tag=AD39_RS23215;old_locus_tag=AD39_0003 NZ_JJLH01000001.1 Protein Homology CDS 2222 3652 . - 0 ID=cds-WP_001112585.1;Parent=gene-AD39_RS23215;Dbxref=GenBank:WP_001112585.1;Name=WP_001112585.1;Ontology_term=GO:0006814,GO:0006865,GO:0005283,GO:0015293,GO:0016020;gbkey=CDS;gene=yaaJ;go_component=membrane|0016020||IEA;go_function=amino acid:sodium symporter activity|0005283||IEA,symporter activity|0015293||IEA;go_process=sodium ion transport|0006814||IEA,amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308034.1;locus_tag=AD39_RS23215;product=alanine/glycine:cation symporter family protein;protein_id=WP_001112585.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 3931 4884 . + . ID=gene-AD39_RS23210;Name=tal;gbkey=Gene;gene=tal;gene_biotype=protein_coding;locus_tag=AD39_RS23210;old_locus_tag=AD39_0004 NZ_JJLH01000001.1 Protein Homology CDS 3931 4884 . + 0 ID=cds-WP_000130187.1;Parent=gene-AD39_RS23210;Dbxref=GenBank:WP_000130187.1;Name=WP_000130187.1;Ontology_term=GO:0006098,GO:0004801,GO:0005737;gbkey=CDS;gene=tal;go_component=cytoplasm|0005737||IEA;go_function=transaldolase activity|0004801||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308035.1;locus_tag=AD39_RS23210;product=transaldolase;protein_id=WP_000130187.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 4999 5586 . + . ID=gene-AD39_RS23205;Name=mog;gbkey=Gene;gene=mog;gene_biotype=protein_coding;locus_tag=AD39_RS23205;old_locus_tag=AD39_0005 NZ_JJLH01000001.1 Protein Homology CDS 4999 5586 . + 0 ID=cds-WP_001094682.1;Parent=gene-AD39_RS23205;Dbxref=GenBank:WP_001094682.1;Name=WP_001094682.1;Ontology_term=GO:0006777;gbkey=CDS;gene=mog;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308036.1;locus_tag=AD39_RS23205;product=molybdopterin adenylyltransferase;protein_id=WP_001094682.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 5621 6187 . - . ID=gene-AD39_RS23200;Name=satP;gbkey=Gene;gene=satP;gene_biotype=protein_coding;locus_tag=AD39_RS23200;old_locus_tag=AD39_0006 NZ_JJLH01000001.1 Protein Homology CDS 5621 6187 . - 0 ID=cds-WP_000528538.1;Parent=gene-AD39_RS23200;Dbxref=GenBank:WP_000528538.1;Name=WP_000528538.1;Ontology_term=GO:0016020;gbkey=CDS;gene=satP;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308037.1;locus_tag=AD39_RS23200;product=acetate uptake transporter;protein_id=WP_000528538.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 6336 7049 . - . ID=gene-AD39_RS23195;Name=msyB;gbkey=Gene;gene=msyB;gene_biotype=protein_coding;locus_tag=AD39_RS23195;old_locus_tag=AD39_0007 NZ_JJLH01000001.1 Protein Homology CDS 6336 7049 . - 0 ID=cds-WP_001389214.1;Parent=gene-AD39_RS23195;Dbxref=GenBank:WP_001389214.1;Name=WP_001389214.1;gbkey=CDS;gene=msyB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414552.1;locus_tag=AD39_RS23195;product=acidic protein MsyB;protein_id=WP_001389214.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 7075 7479 . - . ID=gene-AD39_RS23190;Name=yaaI;gbkey=Gene;gene=yaaI;gene_biotype=protein_coding;locus_tag=AD39_RS23190;old_locus_tag=AD39_0008 NZ_JJLH01000001.1 Protein Homology CDS 7075 7479 . - 0 ID=cds-WP_000843559.1;Parent=gene-AD39_RS23190;Dbxref=GenBank:WP_000843559.1;Name=WP_000843559.1;gbkey=CDS;gene=yaaI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_705972.1;locus_tag=AD39_RS23190;product=DUF2541 family protein;protein_id=WP_000843559.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 7856 9772 . + . ID=gene-AD39_RS23185;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=AD39_RS23185;old_locus_tag=AD39_0010 NZ_JJLH01000001.1 Protein Homology CDS 7856 9772 . + 0 ID=cds-WP_000516135.1;Parent=gene-AD39_RS23185;Dbxref=GenBank:WP_000516135.1;Name=WP_000516135.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887;gbkey=CDS;gene=dnaK;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001737966.1;locus_tag=AD39_RS23185;product=molecular chaperone DnaK;protein_id=WP_000516135.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 9861 10991 . + . ID=gene-AD39_RS23180;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;locus_tag=AD39_RS23180;old_locus_tag=AD39_0011 NZ_JJLH01000001.1 Protein Homology CDS 9861 10991 . + 0 ID=cds-WP_001118464.1;Parent=gene-AD39_RS23180;Dbxref=GenBank:WP_001118464.1;Name=WP_001118464.1;Ontology_term=GO:0006457,GO:0009408,GO:0005515,GO:0005524;gbkey=CDS;gene=dnaJ;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA;go_process=protein folding|0006457||IEA,response to heat|0009408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308042.1;locus_tag=AD39_RS23180;product=molecular chaperone DnaJ;protein_id=WP_001118464.1;transl_table=11 NZ_JJLH01000001.1 RefSeq pseudogene 11098 11247 . - . ID=gene-AD39_RS26125;Name=AD39_RS26125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS26125;partial=true;pseudo=true;start_range=.,11098 NZ_JJLH01000001.1 Protein Homology CDS 11098 11247 . - 0 ID=cds-AD39_RS26125;Parent=gene-AD39_RS26125;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_025292.1;locus_tag=AD39_RS26125;partial=true;product=type I toxin-antitoxin system Hok family toxin;pseudo=true;start_range=.,11098;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 11833 12999 . + . ID=gene-AD39_RS23175;Name=nhaA;gbkey=Gene;gene=nhaA;gene_biotype=protein_coding;locus_tag=AD39_RS23175;old_locus_tag=AD39_0012 NZ_JJLH01000001.1 Protein Homology CDS 11833 12999 . + 0 ID=cds-WP_000681360.1;Parent=gene-AD39_RS23175;Dbxref=GenBank:WP_000681360.1;Name=WP_000681360.1;Ontology_term=GO:0006814,GO:0006885,GO:0015385,GO:0016020;gbkey=CDS;gene=nhaA;go_component=membrane|0016020||IEA;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,regulation of pH|0006885||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308044.1;locus_tag=AD39_RS23175;product=Na+/H+ antiporter NhaA;protein_id=WP_000681360.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 13065 13964 . + . ID=gene-AD39_RS23170;Name=nhaR;gbkey=Gene;gene=nhaR;gene_biotype=protein_coding;locus_tag=AD39_RS23170;old_locus_tag=AD39_0013 NZ_JJLH01000001.1 Protein Homology CDS 13065 13964 . + 0 ID=cds-WP_001360397.1;Parent=gene-AD39_RS23170;Dbxref=GenBank:WP_001360397.1;Name=WP_001360397.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=nhaR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_705976.2;locus_tag=AD39_RS23170;product=transcriptional activator NhaR;protein_id=WP_001360397.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 14002 14961 . - . ID=gene-AD39_RS23165;Name=AD39_RS23165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS23165;old_locus_tag=AD39_0014 NZ_JJLH01000001.1 Protein Homology CDS 14002 14961 . - 0 ID=cds-WP_032282983.1;Parent=gene-AD39_RS23165;Dbxref=GenBank:WP_032282983.1;Name=WP_032282983.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000871680.1;locus_tag=AD39_RS23165;product=fimbrial family protein;protein_id=WP_032282983.1;transl_table=11 NZ_JJLH01000001.1 RefSeq pseudogene 14974 16305 . - . ID=gene-AD39_RS23160;Name=AD39_RS23160;end_range=16305,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS23160;old_locus_tag=AD39_0015;partial=true;pseudo=true NZ_JJLH01000001.1 Protein Homology CDS 14974 16305 . - 0 ID=cds-AD39_RS23160;Parent=gene-AD39_RS23160;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0009297,GO:0015473,GO:0016020;end_range=16305,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308049.1;locus_tag=AD39_RS23160;partial=true;product=fimbria/pilus outer membrane usher protein;pseudo=true;transl_table=11 NZ_JJLH01000001.1 RefSeq pseudogene 16552 17972 . - . ID=gene-AD39_RS23155;Name=espX1;gbkey=Gene;gene=espX1;gene_biotype=pseudogene;locus_tag=AD39_RS23155;old_locus_tag=AD39_0016;pseudo=true NZ_JJLH01000001.1 Protein Homology CDS 16552 17972 . - 0 ID=cds-AD39_RS23155;Parent=gene-AD39_RS23155;Note=frameshifted;gbkey=CDS;gene=espX1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308052.1;locus_tag=AD39_RS23155;product=type III secretion system effector EspX1;pseudo=true;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 18455 18718 . - . ID=gene-AD39_RS0123235;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=AD39_RS0123235;old_locus_tag=AD39_0018 NZ_JJLH01000001.1 Protein Homology CDS 18455 18718 . - 0 ID=cds-WP_001274021.1;Parent=gene-AD39_RS0123235;Dbxref=GenBank:WP_001274021.1;Name=WP_001274021.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsT;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006117633.1;locus_tag=AD39_RS0123235;product=30S ribosomal protein S20;protein_id=WP_001274021.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 18821 19039 . + . ID=gene-AD39_RS0123240;Name=yaaY;gbkey=Gene;gene=yaaY;gene_biotype=protein_coding;locus_tag=AD39_RS0123240 NZ_JJLH01000001.1 Protein Homology CDS 18821 19039 . + 0 ID=cds-WP_001295417.1;Parent=gene-AD39_RS0123240;Dbxref=GenBank:WP_001295417.1;Name=WP_001295417.1;gbkey=CDS;gene=yaaY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414565.1;locus_tag=AD39_RS0123240;product=DUF2575 family protein;protein_id=WP_001295417.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 19047 19988 . + . ID=gene-AD39_RS23150;Name=ribF;gbkey=Gene;gene=ribF;gene_biotype=protein_coding;locus_tag=AD39_RS23150;old_locus_tag=AD39_0019 NZ_JJLH01000001.1 Protein Homology CDS 19047 19988 . + 0 ID=cds-WP_000767329.1;Parent=gene-AD39_RS23150;Dbxref=GenBank:WP_000767329.1;Name=WP_000767329.1;Ontology_term=GO:0003919;gbkey=CDS;gene=ribF;go_function=FMN adenylyltransferase activity|0003919||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308055.1;locus_tag=AD39_RS23150;product=bifunctional riboflavin kinase/FAD synthetase;protein_id=WP_000767329.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 20031 22847 . + . ID=gene-AD39_RS23145;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=AD39_RS23145;old_locus_tag=AD39_0020 NZ_JJLH01000001.1 Protein Homology CDS 20031 22847 . + 0 ID=cds-WP_001286857.1;Parent=gene-AD39_RS23145;Dbxref=GenBank:WP_001286857.1;Name=WP_001286857.1;Ontology_term=GO:0006428,GO:0000166,GO:0004822,GO:0005524;gbkey=CDS;gene=ileS;go_function=nucleotide binding|0000166||IEA,isoleucine-tRNA ligase activity|0004822||IEA,ATP binding|0005524||IEA;go_process=isoleucyl-tRNA aminoacylation|0006428||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124083.1;locus_tag=AD39_RS23145;product=isoleucine--tRNA ligase;protein_id=WP_001286857.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 22847 23341 . + . ID=gene-AD39_RS23140;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=AD39_RS23140;old_locus_tag=AD39_0021 NZ_JJLH01000001.1 Protein Homology CDS 22847 23341 . + 0 ID=cds-WP_000083369.1;Parent=gene-AD39_RS23140;Dbxref=GenBank:WP_000083369.1;Name=WP_000083369.1;Ontology_term=GO:0006508,GO:0009306,GO:0004190,GO:0005886;gbkey=CDS;gene=lspA;go_component=plasma membrane|0005886||IEA;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=proteolysis|0006508||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414568.1;locus_tag=AD39_RS23140;product=signal peptidase II;protein_id=WP_000083369.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 23429 23878 . + . ID=gene-AD39_RS23135;Name=fkpB;gbkey=Gene;gene=fkpB;gene_biotype=protein_coding;locus_tag=AD39_RS23135;old_locus_tag=AD39_0022 NZ_JJLH01000001.1 Protein Homology CDS 23429 23878 . + 0 ID=cds-WP_000004655.1;Parent=gene-AD39_RS23135;Dbxref=GenBank:WP_000004655.1;Name=WP_000004655.1;Ontology_term=GO:0003755;gbkey=CDS;gene=fkpB;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308058.1;locus_tag=AD39_RS23135;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000004655.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 23880 24830 . + . ID=gene-AD39_RS23130;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;gene_synonym=lytB;locus_tag=AD39_RS23130;old_locus_tag=AD39_0023 NZ_JJLH01000001.1 Protein Homology CDS 23880 24830 . + 0 ID=cds-WP_001166405.1;Parent=gene-AD39_RS23130;Dbxref=GenBank:WP_001166405.1;Name=WP_001166405.1;Ontology_term=GO:0019288,GO:0050992,GO:0046872,GO:0051745;gbkey=CDS;gene=ispH;go_function=metal ion binding|0046872||IEA,4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity|0051745||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA,dimethylallyl diphosphate biosynthetic process|0050992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124087.1;locus_tag=AD39_RS23130;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=WP_001166405.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 24896 25810 . + . ID=gene-AD39_RS23125;Name=rihC;gbkey=Gene;gene=rihC;gene_biotype=protein_coding;locus_tag=AD39_RS23125;old_locus_tag=AD39_0024 NZ_JJLH01000001.1 Protein Homology CDS 24896 25810 . + 0 ID=cds-WP_001239119.1;Parent=gene-AD39_RS23125;Dbxref=GenBank:WP_001239119.1;Name=WP_001239119.1;Ontology_term=GO:0016799;gbkey=CDS;gene=rihC;go_function=hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414571.1;locus_tag=AD39_RS23125;product=ribonucleoside hydrolase RihC;protein_id=WP_001239119.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 25977 26798 . + . ID=gene-AD39_RS23120;Name=dapB;gbkey=Gene;gene=dapB;gene_biotype=protein_coding;locus_tag=AD39_RS23120;old_locus_tag=AD39_0025 NZ_JJLH01000001.1 Protein Homology CDS 25977 26798 . + 0 ID=cds-WP_000543605.1;Parent=gene-AD39_RS23120;Dbxref=GenBank:WP_000543605.1;Name=WP_000543605.1;Ontology_term=GO:0009089,GO:0008839;gbkey=CDS;gene=dapB;go_function=4-hydroxy-tetrahydrodipicolinate reductase|0008839||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414572.1;locus_tag=AD39_RS23120;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=WP_000543605.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 27254 28402 . + . ID=gene-AD39_RS23115;Name=carA;gbkey=Gene;gene=carA;gene_biotype=protein_coding;locus_tag=AD39_RS23115;old_locus_tag=AD39_0027 NZ_JJLH01000001.1 Protein Homology CDS 27254 28402 . + 0 ID=cds-WP_000597260.1;Parent=gene-AD39_RS23115;Dbxref=GenBank:WP_000597260.1;Name=WP_000597260.1;Ontology_term=GO:0006207,GO:0006541,GO:0004088;gbkey=CDS;gene=carA;go_function=carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|0004088||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308062.1;locus_tag=AD39_RS23115;product=glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit;protein_id=WP_000597260.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 28420 31641 . + . ID=gene-AD39_RS23110;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=AD39_RS23110;old_locus_tag=AD39_0028 NZ_JJLH01000001.1 Protein Homology CDS 28420 31641 . + 0 ID=cds-WP_001460415.1;Parent=gene-AD39_RS23110;Dbxref=GenBank:WP_001460415.1;Name=WP_001460415.1;Ontology_term=GO:0008152,GO:0005524,GO:0046872;gbkey=CDS;gene=carB;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308063.1;locus_tag=AD39_RS23110;product=carbamoyl-phosphate synthase large subunit;protein_id=WP_001460415.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 31902 32297 . + . ID=gene-AD39_RS23100;Name=caiF;gbkey=Gene;gene=caiF;gene_biotype=protein_coding;locus_tag=AD39_RS23100;old_locus_tag=AD39_0030 NZ_JJLH01000001.1 Protein Homology CDS 31902 32297 . + 0 ID=cds-WP_000333120.1;Parent=gene-AD39_RS23100;Dbxref=GenBank:WP_000333120.1;Name=WP_000333120.1;gbkey=CDS;gene=caiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414576.4;locus_tag=AD39_RS23100;product=carnitine metabolism transcriptional regulator CaiF;protein_id=WP_000333120.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 32383 32973 . - . ID=gene-AD39_RS23095;Name=caiE;gbkey=Gene;gene=caiE;gene_biotype=protein_coding;locus_tag=AD39_RS23095;old_locus_tag=AD39_0031 NZ_JJLH01000001.1 Protein Homology CDS 32383 32973 . - 0 ID=cds-WP_000122876.1;Parent=gene-AD39_RS23095;Dbxref=GenBank:WP_000122876.1;Name=WP_000122876.1;gbkey=CDS;gene=caiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308065.2;locus_tag=AD39_RS23095;product=carnitine operon protein CaiE;protein_id=WP_000122876.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 32979 33764 . - . ID=gene-AD39_RS23090;Name=caiD;gbkey=Gene;gene=caiD;gene_biotype=protein_coding;locus_tag=AD39_RS23090;old_locus_tag=AD39_0032 NZ_JJLH01000001.1 Protein Homology CDS 32979 33764 . - 0 ID=cds-WP_000004397.1;Parent=gene-AD39_RS23090;Dbxref=GenBank:WP_000004397.1;Name=WP_000004397.1;Ontology_term=GO:0016836;gbkey=CDS;gene=caiD;go_function=hydro-lyase activity|0016836||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414578.2;locus_tag=AD39_RS23090;product=crotonobetainyl-CoA hydratase;protein_id=WP_000004397.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 33873 35426 . - . ID=gene-AD39_RS23085;Name=caiC;gbkey=Gene;gene=caiC;gene_biotype=protein_coding;locus_tag=AD39_RS23085;old_locus_tag=AD39_0033 NZ_JJLH01000001.1 Protein Homology CDS 33873 35426 . - 0 ID=cds-WP_001395601.1;Parent=gene-AD39_RS23085;Dbxref=GenBank:WP_001395601.1;Name=WP_001395601.1;Ontology_term=GO:0009437,GO:0016405;gbkey=CDS;gene=caiC;go_function=CoA-ligase activity|0016405||IEA;go_process=carnitine metabolic process|0009437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308067.2;locus_tag=AD39_RS23085;product=crotonobetaine/carnitine-CoA ligase;protein_id=WP_001395601.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 35500 36717 . - . ID=gene-AD39_RS23080;Name=caiB;gbkey=Gene;gene=caiB;gene_biotype=protein_coding;locus_tag=AD39_RS23080;old_locus_tag=AD39_0034 NZ_JJLH01000001.1 Protein Homology CDS 35500 36717 . - 0 ID=cds-WP_032287469.1;Parent=gene-AD39_RS23080;Dbxref=GenBank:WP_032287469.1;Name=WP_032287469.1;Ontology_term=GO:0009437,GO:0016782;gbkey=CDS;gene=caiB;go_function=transferase activity%2C transferring sulphur-containing groups|0016782||IEA;go_process=carnitine metabolic process|0009437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_705994.1;locus_tag=AD39_RS23080;product=L-carnitine CoA-transferase;protein_id=WP_032287469.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 36846 37988 . - . ID=gene-AD39_RS23075;Name=caiA;gbkey=Gene;gene=caiA;gene_biotype=protein_coding;locus_tag=AD39_RS23075;old_locus_tag=AD39_0035 NZ_JJLH01000001.1 Protein Homology CDS 36846 37988 . - 0 ID=cds-WP_000347117.1;Parent=gene-AD39_RS23075;Dbxref=GenBank:WP_000347117.1;Name=WP_000347117.1;Ontology_term=GO:0009437,GO:0003995,GO:0016627;gbkey=CDS;gene=caiA;go_function=acyl-CoA dehydrogenase activity|0003995||IEA,oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA;go_process=carnitine metabolic process|0009437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124373.1;locus_tag=AD39_RS23075;product=crotonobetainyl-CoA dehydrogenase;protein_id=WP_000347117.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 38019 39533 . - . ID=gene-AD39_RS23070;Name=caiT;gbkey=Gene;gene=caiT;gene_biotype=protein_coding;locus_tag=AD39_RS23070;old_locus_tag=AD39_0036 NZ_JJLH01000001.1 Protein Homology CDS 38019 39533 . - 0 ID=cds-WP_000787090.1;Parent=gene-AD39_RS23070;Dbxref=GenBank:WP_000787090.1;Name=WP_000787090.1;gbkey=CDS;gene=caiT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414582.1;locus_tag=AD39_RS23070;product=L-carnitine/gamma-butyrobetaine antiporter;protein_id=WP_000787090.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 40007 40777 . + . ID=gene-AD39_RS23065;Name=fixA;gbkey=Gene;gene=fixA;gene_biotype=protein_coding;locus_tag=AD39_RS23065;old_locus_tag=AD39_0037 NZ_JJLH01000001.1 Protein Homology CDS 40007 40777 . + 0 ID=cds-WP_000692206.1;Parent=gene-AD39_RS23065;Dbxref=GenBank:WP_000692206.1;Name=WP_000692206.1;gbkey=CDS;gene=fixA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414583.2;locus_tag=AD39_RS23065;product=electron transfer flavoprotein FixA;protein_id=WP_000692206.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 40792 41733 . + . ID=gene-AD39_RS23060;Name=fixB;gbkey=Gene;gene=fixB;gene_biotype=protein_coding;locus_tag=AD39_RS23060;old_locus_tag=AD39_0038 NZ_JJLH01000001.1 Protein Homology CDS 40792 41733 . + 0 ID=cds-WP_001091528.1;Parent=gene-AD39_RS23060;Dbxref=GenBank:WP_001091528.1;Name=WP_001091528.1;gbkey=CDS;gene=fixB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414584.1;locus_tag=AD39_RS23060;product=electron transfer flavoprotein subunit alpha/FixB family protein;protein_id=WP_001091528.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 41784 43070 . + . ID=gene-AD39_RS23055;Name=fixC;gbkey=Gene;gene=fixC;gene_biotype=protein_coding;locus_tag=AD39_RS23055;old_locus_tag=AD39_0039 NZ_JJLH01000001.1 Protein Homology CDS 41784 43070 . + 0 ID=cds-WP_001287715.1;Parent=gene-AD39_RS23055;Dbxref=GenBank:WP_001287715.1;Name=WP_001287715.1;gbkey=CDS;gene=fixC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414585.1;locus_tag=AD39_RS23055;product=FAD-dependent oxidoreductase;protein_id=WP_001287715.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 43067 43354 . + . ID=gene-AD39_RS23050;Name=fixX;gbkey=Gene;gene=fixX;gene_biotype=protein_coding;locus_tag=AD39_RS23050;old_locus_tag=AD39_0040 NZ_JJLH01000001.1 Protein Homology CDS 43067 43354 . + 0 ID=cds-WP_000203747.1;Parent=gene-AD39_RS23050;Dbxref=GenBank:WP_000203747.1;Name=WP_000203747.1;gbkey=CDS;gene=fixX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706000.1;locus_tag=AD39_RS23050;product=ferredoxin-like protein FixX;protein_id=WP_000203747.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 43412 44743 . + . ID=gene-AD39_RS23045;Name=yaaU;gbkey=Gene;gene=yaaU;gene_biotype=protein_coding;locus_tag=AD39_RS23045;old_locus_tag=AD39_0041 NZ_JJLH01000001.1 Protein Homology CDS 43412 44743 . + 0 ID=cds-WP_001183198.1;Parent=gene-AD39_RS23045;Dbxref=GenBank:WP_001183198.1;Name=WP_001183198.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yaaU;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414587.1;locus_tag=AD39_RS23045;product=MFS transporter;protein_id=WP_001183198.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 44851 45381 . + . ID=gene-AD39_RS23040;Name=kefF;gbkey=Gene;gene=kefF;gene_biotype=protein_coding;locus_tag=AD39_RS23040;old_locus_tag=AD39_0042 NZ_JJLH01000001.1 Protein Homology CDS 44851 45381 . + 0 ID=cds-WP_000600725.1;Parent=gene-AD39_RS23040;Dbxref=GenBank:WP_000600725.1;Name=WP_000600725.1;Ontology_term=GO:0006813;gbkey=CDS;gene=kefF;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414588.1;locus_tag=AD39_RS23040;product=glutathione-regulated potassium-efflux system oxidoreductase KefF;protein_id=WP_000600725.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 45374 47236 . + . ID=gene-AD39_RS23035;Name=kefC;gbkey=Gene;gene=kefC;gene_biotype=protein_coding;locus_tag=AD39_RS23035;old_locus_tag=AD39_0043 NZ_JJLH01000001.1 Protein Homology CDS 45374 47236 . + 0 ID=cds-WP_032282985.1;Parent=gene-AD39_RS23035;Dbxref=GenBank:WP_032282985.1;Name=WP_032282985.1;Ontology_term=GO:0006813,GO:0015503;gbkey=CDS;gene=kefC;go_function=glutathione-regulated potassium exporter activity|0015503||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414589.1;locus_tag=AD39_RS23035;product=glutathione-regulated potassium-efflux system protein KefC;protein_id=WP_032282985.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 47428 47907 . + . ID=gene-AD39_RS23030;Name=folA;gbkey=Gene;gene=folA;gene_biotype=protein_coding;locus_tag=AD39_RS23030;old_locus_tag=AD39_0044 NZ_JJLH01000001.1 Protein Homology CDS 47428 47907 . + 0 ID=cds-WP_000624375.1;Parent=gene-AD39_RS23030;Dbxref=GenBank:WP_000624375.1;Name=WP_000624375.1;Ontology_term=GO:0046654,GO:0004146;gbkey=CDS;gene=folA;go_function=dihydrofolate reductase activity|0004146||IEA;go_process=tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020456510.1;locus_tag=AD39_RS23030;product=type 3 dihydrofolate reductase;protein_id=WP_000624375.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 47985 48827 . - . ID=gene-AD39_RS23025;Name=apaH;gbkey=Gene;gene=apaH;gene_biotype=protein_coding;locus_tag=AD39_RS23025;old_locus_tag=AD39_0045 NZ_JJLH01000001.1 Protein Homology CDS 47985 48827 . - 0 ID=cds-WP_000257192.1;Parent=gene-AD39_RS23025;Dbxref=GenBank:WP_000257192.1;Name=WP_000257192.1;Ontology_term=GO:0008803;gbkey=CDS;gene=apaH;go_function=bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity|0008803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414591.1;locus_tag=AD39_RS23025;product=bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH;protein_id=WP_000257192.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 48834 49211 . - . ID=gene-AD39_RS0123255;Name=apaG;gbkey=Gene;gene=apaG;gene_biotype=protein_coding;locus_tag=AD39_RS0123255;old_locus_tag=AD39_0046 NZ_JJLH01000001.1 Protein Homology CDS 48834 49211 . - 0 ID=cds-WP_000610901.1;Parent=gene-AD39_RS0123255;Dbxref=GenBank:WP_000610901.1;Name=WP_000610901.1;gbkey=CDS;gene=apaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308082.1;locus_tag=AD39_RS0123255;product=Co2+/Mg2+ efflux protein ApaG;protein_id=WP_000610901.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 49214 50035 . - . ID=gene-AD39_RS23020;Name=rsmA;gbkey=Gene;gene=rsmA;gene_biotype=protein_coding;locus_tag=AD39_RS23020;old_locus_tag=AD39_0047 NZ_JJLH01000001.1 Protein Homology CDS 49214 50035 . - 0 ID=cds-WP_001065373.1;Parent=gene-AD39_RS23020;Dbxref=GenBank:WP_001065373.1;Name=WP_001065373.1;Ontology_term=GO:0006364,GO:0000179;gbkey=CDS;gene=rsmA;go_function=rRNA (adenine-N6%2CN6-)-dimethyltransferase activity|0000179||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414593.1;locus_tag=AD39_RS23020;product=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA;protein_id=WP_001065373.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 50032 51021 . - . ID=gene-AD39_RS23015;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=AD39_RS23015;old_locus_tag=AD39_0048 NZ_JJLH01000001.1 Protein Homology CDS 50032 51021 . - 0 ID=cds-WP_032287470.1;Parent=gene-AD39_RS23015;Dbxref=GenBank:WP_032287470.1;Name=WP_032287470.1;Ontology_term=GO:0008615,GO:0050570;gbkey=CDS;gene=pdxA;go_function=4-hydroxythreonine-4-phosphate dehydrogenase activity|0050570||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414594.1;locus_tag=AD39_RS23015;product=4-hydroxythreonine-4-phosphate dehydrogenase PdxA;protein_id=WP_032287470.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 51021 52307 . - . ID=gene-AD39_RS23010;Name=surA;gbkey=Gene;gene=surA;gene_biotype=protein_coding;locus_tag=AD39_RS23010;old_locus_tag=AD39_0049 NZ_JJLH01000001.1 Protein Homology CDS 51021 52307 . - 0 ID=cds-WP_000800457.1;Parent=gene-AD39_RS23010;Dbxref=GenBank:WP_000800457.1;Name=WP_000800457.1;Ontology_term=GO:0006457,GO:0043165,GO:0050821,GO:0060274,GO:0003755,GO:0042277,GO:0051082,GO:0030288;gbkey=CDS;gene=surA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,peptide binding|0042277||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA,Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA,protein stabilization|0050821||IEA,maintenance of stationary phase|0060274||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308085.1;locus_tag=AD39_RS23010;product=peptidylprolyl isomerase SurA;protein_id=WP_000800457.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 52360 54714 . - . ID=gene-AD39_RS23005;Name=lptD;gbkey=Gene;gene=lptD;gene_biotype=protein_coding;locus_tag=AD39_RS23005;old_locus_tag=AD39_0050 NZ_JJLH01000001.1 Protein Homology CDS 52360 54714 . - 0 ID=cds-WP_000746151.1;Parent=gene-AD39_RS23005;Dbxref=GenBank:WP_000746151.1;Name=WP_000746151.1;Ontology_term=GO:0015920,GO:0043165,GO:0019867;gbkey=CDS;gene=lptD;go_component=outer membrane|0019867||IEA;go_process=lipopolysaccharide transport|0015920||IEA,Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414596.1;locus_tag=AD39_RS23005;product=LPS assembly protein LptD;protein_id=WP_000746151.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 54969 55784 . + . ID=gene-AD39_RS23000;Name=djlA;gbkey=Gene;gene=djlA;gene_biotype=protein_coding;locus_tag=AD39_RS23000;old_locus_tag=AD39_0051 NZ_JJLH01000001.1 Protein Homology CDS 54969 55784 . + 0 ID=cds-WP_001200573.1;Parent=gene-AD39_RS23000;Dbxref=GenBank:WP_001200573.1;Name=WP_001200573.1;Ontology_term=GO:0051087;gbkey=CDS;gene=djlA;go_function=protein-folding chaperone binding|0051087||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308087.1;locus_tag=AD39_RS23000;product=co-chaperone DjlA;protein_id=WP_001200573.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 55901 56560 . - . ID=gene-AD39_RS22995;Name=rluA;gbkey=Gene;gene=rluA;gene_biotype=protein_coding;locus_tag=AD39_RS22995;old_locus_tag=AD39_0052 NZ_JJLH01000001.1 Protein Homology CDS 55901 56560 . - 0 ID=cds-WP_000525176.1;Parent=gene-AD39_RS22995;Dbxref=GenBank:WP_000525176.1;Name=WP_000525176.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=rluA;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414600.1;locus_tag=AD39_RS22995;product=bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA;protein_id=WP_000525176.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 56572 59478 . - . ID=gene-AD39_RS22990;Name=rapA;gbkey=Gene;gene=rapA;gene_biotype=protein_coding;locus_tag=AD39_RS22990;old_locus_tag=AD39_0053 NZ_JJLH01000001.1 Protein Homology CDS 56572 59478 . - 0 ID=cds-WP_032287471.1;Parent=gene-AD39_RS22990;Dbxref=GenBank:WP_032287471.1;Name=WP_032287471.1;Ontology_term=GO:0006355,GO:0005524,GO:0016817,GO:0140658;gbkey=CDS;gene=rapA;go_function=ATP binding|0005524||IEA,hydrolase activity%2C acting on acid anhydrides|0016817||IEA,ATP-dependent chromatin remodeler activity|0140658||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001117023.1;locus_tag=AD39_RS22990;product=RNA polymerase-associated protein RapA;protein_id=WP_032287471.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 59643 61994 . - . ID=gene-AD39_RS22985;Name=polB;gbkey=Gene;gene=polB;gene_biotype=protein_coding;locus_tag=AD39_RS22985;old_locus_tag=AD39_0054 NZ_JJLH01000001.1 Protein Homology CDS 59643 61994 . - 0 ID=cds-WP_032287472.1;Parent=gene-AD39_RS22985;Dbxref=GenBank:WP_032287472.1;Name=WP_032287472.1;Ontology_term=GO:0003677,GO:0003887;gbkey=CDS;gene=polB;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414602.1;locus_tag=AD39_RS22985;product=DNA polymerase II;protein_id=WP_032287472.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 62069 62764 . - . ID=gene-AD39_RS22980;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=AD39_RS22980;old_locus_tag=AD39_0055 NZ_JJLH01000001.1 Protein Homology CDS 62069 62764 . - 0 ID=cds-WP_000888668.1;Parent=gene-AD39_RS22980;Dbxref=GenBank:WP_000888668.1;Name=WP_000888668.1;Ontology_term=GO:0019568,GO:0008270,GO:0008742;gbkey=CDS;gene=araD;go_function=zinc ion binding|0008270||IEA,L-ribulose-phosphate 4-epimerase activity|0008742||IEA;go_process=arabinose catabolic process|0019568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414603.1;locus_tag=AD39_RS22980;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_000888668.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 62933 64435 . - . ID=gene-AD39_RS22975;Name=araA;gbkey=Gene;gene=araA;gene_biotype=protein_coding;locus_tag=AD39_RS22975;old_locus_tag=AD39_0056 NZ_JJLH01000001.1 Protein Homology CDS 62933 64435 . - 0 ID=cds-WP_000151734.1;Parent=gene-AD39_RS22975;Dbxref=GenBank:WP_000151734.1;Name=WP_000151734.1;Ontology_term=GO:0005996,GO:0008733;gbkey=CDS;gene=araA;go_function=L-arabinose isomerase activity|0008733||IEA;go_process=monosaccharide metabolic process|0005996||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308093.1;locus_tag=AD39_RS22975;product=L-arabinose isomerase;protein_id=WP_000151734.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 64446 66146 . - . ID=gene-AD39_RS22970;Name=araB;gbkey=Gene;gene=araB;gene_biotype=protein_coding;locus_tag=AD39_RS22970;old_locus_tag=AD39_0057 NZ_JJLH01000001.1 Protein Homology CDS 64446 66146 . - 0 ID=cds-WP_000951778.1;Parent=gene-AD39_RS22970;Dbxref=GenBank:WP_000951778.1;Name=WP_000951778.1;Ontology_term=GO:0019568,GO:0005524,GO:0008741;gbkey=CDS;gene=araB;go_function=ATP binding|0005524||IEA,ribulokinase activity|0008741||IEA;go_process=arabinose catabolic process|0019568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706016.1;locus_tag=AD39_RS22970;product=ribulokinase;protein_id=WP_000951778.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 66485 67363 . + . ID=gene-AD39_RS22965;Name=araC;gbkey=Gene;gene=araC;gene_biotype=protein_coding;locus_tag=AD39_RS22965;old_locus_tag=AD39_0058 NZ_JJLH01000001.1 Protein Homology CDS 66485 67363 . + 0 ID=cds-WP_001300811.1;Parent=gene-AD39_RS22965;Dbxref=GenBank:WP_001300811.1;Name=WP_001300811.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=araC;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308095.1;locus_tag=AD39_RS22965;product=arabinose operon transcriptional regulator AraC;protein_id=WP_001300811.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 67449 68213 . + . ID=gene-AD39_RS22960;Name=yabI;gbkey=Gene;gene=yabI;gene_biotype=protein_coding;locus_tag=AD39_RS22960;old_locus_tag=AD39_0059 NZ_JJLH01000001.1 Protein Homology CDS 67449 68213 . + 0 ID=cds-WP_032261041.1;Parent=gene-AD39_RS22960;Dbxref=GenBank:WP_032261041.1;Name=WP_032261041.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yabI;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706018.1;locus_tag=AD39_RS22960;product=DedA family protein;protein_id=WP_032261041.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 68315 69013 . - . ID=gene-AD39_RS22955;Name=thiQ;gbkey=Gene;gene=thiQ;gene_biotype=protein_coding;locus_tag=AD39_RS22955;old_locus_tag=AD39_0060 NZ_JJLH01000001.1 Protein Homology CDS 68315 69013 . - 0 ID=cds-WP_001402014.1;Parent=gene-AD39_RS22955;Dbxref=GenBank:WP_001402014.1;Name=WP_001402014.1;gbkey=CDS;gene=thiQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308097.1;locus_tag=AD39_RS22955;product=thiamine ABC transporter ATP-binding protein ThiQ;protein_id=WP_001402014.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 68997 70607 . - . ID=gene-AD39_RS22950;Name=thiP;gbkey=Gene;gene=thiP;gene_biotype=protein_coding;locus_tag=AD39_RS22950;old_locus_tag=AD39_0061 NZ_JJLH01000001.1 Protein Homology CDS 68997 70607 . - 0 ID=cds-WP_000235706.1;Parent=gene-AD39_RS22950;Dbxref=GenBank:WP_000235706.1;Name=WP_000235706.1;gbkey=CDS;gene=thiP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706020.1;locus_tag=AD39_RS22950;product=thiamine/thiamine pyrophosphate ABC transporter permease ThiP;protein_id=WP_000235706.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 70583 71566 . - . ID=gene-AD39_RS22945;Name=thiB;gbkey=Gene;gene=thiB;gene_biotype=protein_coding;locus_tag=AD39_RS22945;old_locus_tag=AD39_0062 NZ_JJLH01000001.1 Protein Homology CDS 70583 71566 . - 0 ID=cds-WP_001579881.1;Parent=gene-AD39_RS22945;Dbxref=GenBank:WP_001579881.1;Name=WP_001579881.1;Ontology_term=GO:0015888,GO:0030975,GO:0048502,GO:0030288,GO:0055052;gbkey=CDS;gene=thiB;go_component=outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=thiamine binding|0030975||IEA,ABC-type thiamine transporter activity|0048502||IEA;go_process=thiamine transport|0015888||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706021.2;locus_tag=AD39_RS22945;product=thiamine ABC transporter substrate binding subunit;protein_id=WP_001579881.1;transl_table=11 NZ_JJLH01000001.1 cmsearch riboswitch 71597 71696 . - . ID=id-NZ_JJLH01000001.1:71597..71696;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_JJLH01000001.1 RefSeq gene 71730 73385 . - . ID=gene-AD39_RS22940;Name=sgrR;gbkey=Gene;gene=sgrR;gene_biotype=protein_coding;locus_tag=AD39_RS22940;old_locus_tag=AD39_0063 NZ_JJLH01000001.1 Protein Homology CDS 71730 73385 . - 0 ID=cds-WP_001609201.1;Parent=gene-AD39_RS22940;Dbxref=GenBank:WP_001609201.1;Name=WP_001609201.1;gbkey=CDS;gene=sgrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414611.1;locus_tag=AD39_RS22940;product=DNA-binding transcriptional regulator SgrR;protein_id=WP_001609201.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 73474 73605 . + . ID=gene-AD39_RS22935;Name=sgrT;gbkey=Gene;gene=sgrT;gene_biotype=protein_coding;locus_tag=AD39_RS22935;old_locus_tag=AD39_0064 NZ_JJLH01000001.1 Protein Homology CDS 73474 73605 . + 0 ID=cds-WP_001248770.1;Parent=gene-AD39_RS22935;Dbxref=GenBank:WP_001248770.1;Name=WP_001248770.1;Ontology_term=GO:0046325;gbkey=CDS;gene=sgrT;go_process=negative regulation of D-glucose import|0046325||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791237.1;locus_tag=AD39_RS22935;product=glucose uptake inhibitor SgrT;protein_id=WP_001248770.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 73707 74885 . + . ID=gene-AD39_RS22930;Name=setA;gbkey=Gene;gene=setA;gene_biotype=protein_coding;locus_tag=AD39_RS22930;old_locus_tag=AD39_0065 NZ_JJLH01000001.1 Protein Homology CDS 73707 74885 . + 0 ID=cds-WP_000637846.1;Parent=gene-AD39_RS22930;Dbxref=GenBank:WP_000637846.1;Name=WP_000637846.1;gbkey=CDS;gene=setA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_025293.1;locus_tag=AD39_RS22930;product=sugar efflux transporter SetA;protein_id=WP_000637846.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 74934 75539 . - . ID=gene-AD39_RS22925;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=AD39_RS22925;old_locus_tag=AD39_0066 NZ_JJLH01000001.1 Protein Homology CDS 74934 75539 . - 0 ID=cds-WP_000818228.1;Parent=gene-AD39_RS22925;Dbxref=GenBank:WP_000818228.1;Name=WP_000818228.1;Ontology_term=GO:0009098,GO:0003861,GO:0009316;gbkey=CDS;gene=leuD;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414613.1;locus_tag=AD39_RS22925;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_000818228.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 75550 76950 . - . ID=gene-AD39_RS22920;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;locus_tag=AD39_RS22920;old_locus_tag=AD39_0067 NZ_JJLH01000001.1 Protein Homology CDS 75550 76950 . - 0 ID=cds-WP_001140652.1;Parent=gene-AD39_RS22920;Dbxref=GenBank:WP_001140652.1;Name=WP_001140652.1;Ontology_term=GO:0009098,GO:0003861,GO:0051539,GO:0009316;gbkey=CDS;gene=leuC;go_component=3-isopropylmalate dehydratase complex|0009316||IEA;go_function=3-isopropylmalate dehydratase activity|0003861||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414614.1;locus_tag=AD39_RS22920;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_001140652.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 76953 78044 . - . ID=gene-AD39_RS22915;Name=leuB;gbkey=Gene;gene=leuB;gene_biotype=protein_coding;locus_tag=AD39_RS22915;old_locus_tag=AD39_0068 NZ_JJLH01000001.1 Protein Homology CDS 76953 78044 . - 0 ID=cds-WP_000042353.1;Parent=gene-AD39_RS22915;Dbxref=GenBank:WP_000042353.1;Name=WP_000042353.1;Ontology_term=GO:0009098,GO:0003862;gbkey=CDS;gene=leuB;go_function=3-isopropylmalate dehydrogenase activity|0003862||IEA;go_process=L-leucine biosynthetic process|0009098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124544.1;locus_tag=AD39_RS22915;product=3-isopropylmalate dehydrogenase;protein_id=WP_000042353.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 78044 79615 . - . ID=gene-AD39_RS22910;Name=leuA;gbkey=Gene;gene=leuA;gene_biotype=protein_coding;locus_tag=AD39_RS22910;old_locus_tag=AD39_0069 NZ_JJLH01000001.1 Protein Homology CDS 78044 79615 . - 0 ID=cds-WP_000082846.1;Parent=gene-AD39_RS22910;Dbxref=GenBank:WP_000082846.1;Name=WP_000082846.1;Ontology_term=GO:0019752,GO:0003852;gbkey=CDS;gene=leuA;go_function=2-isopropylmalate synthase activity|0003852||IEA;go_process=carboxylic acid metabolic process|0019752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016831521.1;locus_tag=AD39_RS22910;product=2-isopropylmalate synthase;protein_id=WP_000082846.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 79708 79794 . - . ID=gene-AD39_RS0123260;Name=leuL;gbkey=Gene;gene=leuL;gene_biotype=protein_coding;locus_tag=AD39_RS0123260 NZ_JJLH01000001.1 Protein Homology CDS 79708 79794 . - 0 ID=cds-WP_001300467.1;Parent=gene-AD39_RS0123260;Dbxref=GenBank:WP_001300467.1;Name=WP_001300467.1;gbkey=CDS;gene=leuL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308106.1;locus_tag=AD39_RS0123260;product=leu operon leader peptide;protein_id=WP_001300467.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 80454 81398 . + . ID=gene-AD39_RS22905;Name=leuO;gbkey=Gene;gene=leuO;gene_biotype=protein_coding;locus_tag=AD39_RS22905;old_locus_tag=AD39_0072 NZ_JJLH01000001.1 Protein Homology CDS 80454 81398 . + 0 ID=cds-WP_001606033.1;Parent=gene-AD39_RS22905;Dbxref=GenBank:WP_001606033.1;Name=WP_001606033.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=leuO;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414618.4;locus_tag=AD39_RS22905;product=transcriptional regulator LeuO;protein_id=WP_001606033.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 81553 81597 . - . ID=gene-AD39_RS29360;Name=AD39_RS29360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29360 NZ_JJLH01000001.1 Protein Homology CDS 81553 81597 . - 0 ID=cds-WP_128566915.1;Parent=gene-AD39_RS29360;Dbxref=GenBank:WP_128566915.1;Name=WP_128566915.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518736.1;locus_tag=AD39_RS29360;product=hypothetical protein;protein_id=WP_128566915.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 81716 83440 . + . ID=gene-AD39_RS22900;Name=ilvI;gbkey=Gene;gene=ilvI;gene_biotype=protein_coding;locus_tag=AD39_RS22900;old_locus_tag=AD39_0074 NZ_JJLH01000001.1 Protein Homology CDS 81716 83440 . + 0 ID=cds-WP_000425658.1;Parent=gene-AD39_RS22900;Dbxref=GenBank:WP_000425658.1;Name=WP_000425658.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvI;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020079613.1;locus_tag=AD39_RS22900;product=acetolactate synthase 3 large subunit;protein_id=WP_000425658.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 83443 83934 . + . ID=gene-AD39_RS22895;Name=ilvN;gbkey=Gene;gene=ilvN;gene_biotype=protein_coding;locus_tag=AD39_RS22895;old_locus_tag=AD39_0075 NZ_JJLH01000001.1 Protein Homology CDS 83443 83934 . + 0 ID=cds-WP_001252744.1;Parent=gene-AD39_RS22895;Dbxref=GenBank:WP_001252744.1;Name=WP_001252744.1;Ontology_term=GO:0009082,GO:1990610;gbkey=CDS;gene=ilvN;go_function=acetolactate synthase regulator activity|1990610||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001563086.1;locus_tag=AD39_RS22895;product=acetolactate synthase small subunit;protein_id=WP_001252744.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 83946 84032 . + . ID=gene-AD39_RS0123265;Name=AD39_RS0123265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123265 NZ_JJLH01000001.1 Protein Homology CDS 83946 84032 . + 0 ID=cds-WP_001303787.1;Parent=gene-AD39_RS0123265;Dbxref=GenBank:WP_001303787.1;Name=WP_001303787.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308110.1;locus_tag=AD39_RS0123265;product=fruR/shl operon leader peptide;protein_id=WP_001303787.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 84114 85118 . + . ID=gene-AD39_RS22890;Name=cra;gbkey=Gene;gene=cra;gene_biotype=protein_coding;locus_tag=AD39_RS22890;old_locus_tag=AD39_0076 NZ_JJLH01000001.1 Protein Homology CDS 84114 85118 . + 0 ID=cds-WP_000762401.1;Parent=gene-AD39_RS22890;Dbxref=GenBank:WP_000762401.1;Name=WP_000762401.1;Ontology_term=GO:0006355,GO:0009750,GO:0003677;gbkey=CDS;gene=cra;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,response to fructose|0009750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308111.1;locus_tag=AD39_RS22890;product=catabolite repressor/activator;protein_id=WP_000762401.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 85720 86178 . + . ID=gene-AD39_RS22885;Name=mraZ;gbkey=Gene;gene=mraZ;gene_biotype=protein_coding;locus_tag=AD39_RS22885;old_locus_tag=AD39_0077 NZ_JJLH01000001.1 Protein Homology CDS 85720 86178 . + 0 ID=cds-WP_001295770.1;Parent=gene-AD39_RS22885;Dbxref=GenBank:WP_001295770.1;Name=WP_001295770.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=mraZ;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020325403.1;locus_tag=AD39_RS22885;product=division/cell wall cluster transcriptional repressor MraZ;protein_id=WP_001295770.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 86180 87121 . + . ID=gene-AD39_RS22880;Name=rsmH;gbkey=Gene;gene=rsmH;gene_biotype=protein_coding;locus_tag=AD39_RS22880;old_locus_tag=AD39_0078 NZ_JJLH01000001.1 Protein Homology CDS 86180 87121 . + 0 ID=cds-WP_000970479.1;Parent=gene-AD39_RS22880;Dbxref=GenBank:WP_000970479.1;Name=WP_000970479.1;Ontology_term=GO:0016434;gbkey=CDS;gene=rsmH;go_function=rRNA (cytosine) methyltransferase activity|0016434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124563.1;locus_tag=AD39_RS22880;product=16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH;protein_id=WP_000970479.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 87118 87483 . + . ID=gene-AD39_RS22875;Name=ftsL;gbkey=Gene;gene=ftsL;gene_biotype=protein_coding;locus_tag=AD39_RS22875;old_locus_tag=AD39_0079 NZ_JJLH01000001.1 Protein Homology CDS 87118 87483 . + 0 ID=cds-WP_000625658.1;Parent=gene-AD39_RS22875;Dbxref=GenBank:WP_000625658.1;Name=WP_000625658.1;gbkey=CDS;gene=ftsL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000625658.1;locus_tag=AD39_RS22875;product=cell division protein FtsL;protein_id=WP_000625658.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 87499 89265 . + . ID=gene-AD39_RS22870;Name=ftsI;gbkey=Gene;gene=ftsI;gene_biotype=protein_coding;locus_tag=AD39_RS22870;old_locus_tag=AD39_0080 NZ_JJLH01000001.1 Protein Homology CDS 87499 89265 . + 0 ID=cds-WP_001668378.1;Parent=gene-AD39_RS22870;Dbxref=GenBank:WP_001668378.1;Name=WP_001668378.1;gbkey=CDS;gene=ftsI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000642204.1;locus_tag=AD39_RS22870;product=peptidoglycan glycosyltransferase FtsI;protein_id=WP_001668378.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 89252 90739 . + . ID=gene-AD39_RS22865;Name=murE;gbkey=Gene;gene=murE;gene_biotype=protein_coding;locus_tag=AD39_RS22865;old_locus_tag=AD39_0081 NZ_JJLH01000001.1 Protein Homology CDS 89252 90739 . + 0 ID=cds-WP_001631050.1;Parent=gene-AD39_RS22865;Dbxref=GenBank:WP_001631050.1;Name=WP_001631050.1;Ontology_term=GO:0008360,GO:0009058,GO:0051301,GO:0005524,GO:0016881;gbkey=CDS;gene=murE;go_function=ATP binding|0005524||IEA,acid-amino acid ligase activity|0016881||IEA;go_process=regulation of cell shape|0008360||IEA,biosynthetic process|0009058||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414627.1;locus_tag=AD39_RS22865;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-diaminopimelate ligase;protein_id=WP_001631050.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 90736 92094 . + . ID=gene-AD39_RS22860;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;locus_tag=AD39_RS22860;old_locus_tag=AD39_0082 NZ_JJLH01000001.1 Protein Homology CDS 90736 92094 . + 0 ID=cds-WP_000626688.1;Parent=gene-AD39_RS22860;Dbxref=GenBank:WP_000626688.1;Name=WP_000626688.1;Ontology_term=GO:0009058,GO:0071555,GO:0005524,GO:0047480;gbkey=CDS;gene=murF;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity|0047480||IEA;go_process=biosynthetic process|0009058||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414628.1;locus_tag=AD39_RS22860;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_000626688.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 92088 93170 . + . ID=gene-AD39_RS22855;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=AD39_RS22855;old_locus_tag=AD39_0083 NZ_JJLH01000001.1 Protein Homology CDS 92088 93170 . + 0 ID=cds-WP_000964131.1;Parent=gene-AD39_RS22855;Dbxref=GenBank:WP_000964131.1;Name=WP_000964131.1;Ontology_term=GO:0009252,GO:0008963,GO:0016020;gbkey=CDS;gene=mraY;go_component=membrane|0016020||IEA;go_function=phospho-N-acetylmuramoyl-pentapeptide-transferase activity|0008963||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124610.1;locus_tag=AD39_RS22855;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=WP_000964131.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 93173 94489 . + . ID=gene-AD39_RS22850;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=AD39_RS22850;old_locus_tag=AD39_0084 NZ_JJLH01000001.1 Protein Homology CDS 93173 94489 . + 0 ID=cds-WP_000796467.1;Parent=gene-AD39_RS22850;Dbxref=GenBank:WP_000796467.1;Name=WP_000796467.1;Ontology_term=GO:0008360,GO:0009252,GO:0051301,GO:0005524,GO:0008764,GO:0005737;gbkey=CDS;gene=murD;go_component=cytoplasm|0005737||IEA;go_function=ATP binding|0005524||IEA,UDP-N-acetylmuramoylalanine-D-glutamate ligase activity|0008764||IEA;go_process=regulation of cell shape|0008360||IEA,peptidoglycan biosynthetic process|0009252||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124612.1;locus_tag=AD39_RS22850;product=UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase;protein_id=WP_000796467.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 94489 95733 . + . ID=gene-AD39_RS22845;Name=ftsW;gbkey=Gene;gene=ftsW;gene_biotype=protein_coding;locus_tag=AD39_RS22845;old_locus_tag=AD39_0085 NZ_JJLH01000001.1 Protein Homology CDS 94489 95733 . + 0 ID=cds-WP_001295532.1;Parent=gene-AD39_RS22845;Dbxref=GenBank:WP_001295532.1;Name=WP_001295532.1;Ontology_term=GO:0051301;gbkey=CDS;gene=ftsW;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308120.1;locus_tag=AD39_RS22845;product=cell division protein FtsW;protein_id=WP_001295532.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 95730 96797 . + . ID=gene-AD39_RS22840;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=AD39_RS22840;old_locus_tag=AD39_0086 NZ_JJLH01000001.1 Protein Homology CDS 95730 96797 . + 0 ID=cds-WP_000016559.1;Parent=gene-AD39_RS22840;Dbxref=GenBank:WP_000016559.1;Name=WP_000016559.1;Ontology_term=GO:0009252,GO:0050511;gbkey=CDS;gene=murG;go_function=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity|0050511||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308121.1;locus_tag=AD39_RS22840;product=undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase;protein_id=WP_000016559.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 96851 98326 . + . ID=gene-AD39_RS22835;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=AD39_RS22835;old_locus_tag=AD39_0087 NZ_JJLH01000001.1 Protein Homology CDS 96851 98326 . + 0 ID=cds-WP_001096040.1;Parent=gene-AD39_RS22835;Dbxref=GenBank:WP_001096040.1;Name=WP_001096040.1;Ontology_term=GO:0009252,GO:0008763;gbkey=CDS;gene=murC;go_function=UDP-N-acetylmuramate-L-alanine ligase activity|0008763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308122.1;locus_tag=AD39_RS22835;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_001096040.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 98319 99239 . + . ID=gene-AD39_RS22830;Name=ddlB;gbkey=Gene;gene=ddlB;gene_biotype=protein_coding;locus_tag=AD39_RS22830;old_locus_tag=AD39_0088 NZ_JJLH01000001.1 Protein Homology CDS 98319 99239 . + 0 ID=cds-WP_000130056.1;Parent=gene-AD39_RS22830;Dbxref=GenBank:WP_000130056.1;Name=WP_000130056.1;gbkey=CDS;gene=ddlB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414634.1;locus_tag=AD39_RS22830;product=D-alanine--D-alanine ligase;protein_id=WP_000130056.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 99241 100071 . + . ID=gene-AD39_RS22825;Name=ftsQ;gbkey=Gene;gene=ftsQ;gene_biotype=protein_coding;locus_tag=AD39_RS22825;old_locus_tag=AD39_0089 NZ_JJLH01000001.1 Protein Homology CDS 99241 100071 . + 0 ID=cds-WP_000075744.1;Parent=gene-AD39_RS22825;Dbxref=GenBank:WP_000075744.1;Name=WP_000075744.1;Ontology_term=GO:0090529;gbkey=CDS;gene=ftsQ;go_process=cell septum assembly|0090529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308124.1;locus_tag=AD39_RS22825;product=cell division protein FtsQ;protein_id=WP_000075744.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 100068 101330 . + . ID=gene-AD39_RS22820;Name=ftsA;gbkey=Gene;gene=ftsA;gene_biotype=protein_coding;locus_tag=AD39_RS22820;old_locus_tag=AD39_0090 NZ_JJLH01000001.1 Protein Homology CDS 100068 101330 . + 0 ID=cds-WP_001425111.1;Parent=gene-AD39_RS22820;Dbxref=GenBank:WP_001425111.1;Name=WP_001425111.1;Ontology_term=GO:0051301,GO:0005515;gbkey=CDS;gene=ftsA;go_function=protein binding|0005515||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308125.1;locus_tag=AD39_RS22820;product=cell division protein FtsA;protein_id=WP_001425111.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 101391 102542 . + . ID=gene-AD39_RS22815;Name=ftsZ;gbkey=Gene;gene=ftsZ;gene_biotype=protein_coding;locus_tag=AD39_RS22815;old_locus_tag=AD39_0091 NZ_JJLH01000001.1 Protein Homology CDS 101391 102542 . + 0 ID=cds-WP_000462776.1;Parent=gene-AD39_RS22815;Dbxref=GenBank:WP_000462776.1;Name=WP_000462776.1;Ontology_term=GO:0000910,GO:0003924,GO:0005525;gbkey=CDS;gene=ftsZ;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965916.1;locus_tag=AD39_RS22815;product=cell division protein FtsZ;protein_id=WP_000462776.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 102643 103560 . + . ID=gene-AD39_RS22810;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=AD39_RS22810;old_locus_tag=AD39_0092 NZ_JJLH01000001.1 Protein Homology CDS 102643 103560 . + 0 ID=cds-WP_000595482.1;Parent=gene-AD39_RS22810;Dbxref=GenBank:WP_000595482.1;Name=WP_000595482.1;Ontology_term=GO:0009245,GO:0103117;gbkey=CDS;gene=lpxC;go_function=UDP-3-O-acyl-N-acetylglucosamine deacetylase activity|0103117||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308127.1;locus_tag=AD39_RS22810;product=UDP-3-O-acyl-N-acetylglucosamine deacetylase;protein_id=WP_000595482.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 103792 104304 . + . ID=gene-AD39_RS22805;Name=secM;gbkey=Gene;gene=secM;gene_biotype=protein_coding;locus_tag=AD39_RS22805;old_locus_tag=AD39_0093 NZ_JJLH01000001.1 Protein Homology CDS 103792 104304 . + 0 ID=cds-WP_000014321.1;Parent=gene-AD39_RS22805;Dbxref=GenBank:WP_000014321.1;Name=WP_000014321.1;Ontology_term=GO:0045182;gbkey=CDS;gene=secM;go_function=translation regulator activity|0045182||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414639.2;locus_tag=AD39_RS22805;product=secA translation cis-regulator SecM;protein_id=WP_000014321.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 104366 107071 . + . ID=gene-AD39_RS22800;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;locus_tag=AD39_RS22800;old_locus_tag=AD39_0094 NZ_JJLH01000001.1 Protein Homology CDS 104366 107071 . + 0 ID=cds-WP_000905793.1;Parent=gene-AD39_RS22800;Dbxref=GenBank:WP_000905793.1;Name=WP_000905793.1;Ontology_term=GO:0006605,GO:0006886,GO:0017038,GO:0005524;gbkey=CDS;gene=secA;go_function=ATP binding|0005524||IEA;go_process=protein targeting|0006605||IEA,intracellular protein transport|0006886||IEA,protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414640.1;locus_tag=AD39_RS22800;product=preprotein translocase subunit SecA;protein_id=WP_000905793.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 107131 107520 . + . ID=gene-AD39_RS22795;Name=mutT;gbkey=Gene;gene=mutT;gene_biotype=protein_coding;locus_tag=AD39_RS22795;old_locus_tag=AD39_0095 NZ_JJLH01000001.1 Protein Homology CDS 107131 107520 . + 0 ID=cds-WP_000736013.1;Parent=gene-AD39_RS22795;Dbxref=GenBank:WP_000736013.1;Name=WP_000736013.1;Ontology_term=GO:0006281,GO:0008413;gbkey=CDS;gene=mutT;go_function=8-oxo-7%2C8-dihydroguanosine triphosphate pyrophosphatase activity|0008413||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414641.1;locus_tag=AD39_RS22795;product=8-oxo-dGTP diphosphatase MutT;protein_id=WP_000736013.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 107620 107817 . - . ID=gene-AD39_RS22790;Name=yacG;gbkey=Gene;gene=yacG;gene_biotype=protein_coding;locus_tag=AD39_RS22790;old_locus_tag=AD39_0096 NZ_JJLH01000001.1 Protein Homology CDS 107620 107817 . - 0 ID=cds-WP_000005042.1;Parent=gene-AD39_RS22790;Dbxref=GenBank:WP_000005042.1;Name=WP_000005042.1;Ontology_term=GO:0006355,GO:0008270;gbkey=CDS;gene=yacG;go_function=zinc ion binding|0008270||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308132.1;locus_tag=AD39_RS22790;product=DNA gyrase inhibitor YacG;protein_id=WP_000005042.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 107827 108570 . - . ID=gene-AD39_RS22785;Name=zapD;gbkey=Gene;gene=zapD;gene_biotype=protein_coding;locus_tag=AD39_RS22785;old_locus_tag=AD39_0097 NZ_JJLH01000001.1 Protein Homology CDS 107827 108570 . - 0 ID=cds-WP_001194734.1;Parent=gene-AD39_RS22785;Dbxref=GenBank:WP_001194734.1;Name=WP_001194734.1;gbkey=CDS;gene=zapD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414644.1;locus_tag=AD39_RS22785;product=cell division protein ZapD;protein_id=WP_001194734.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 108570 109190 . - . ID=gene-AD39_RS22780;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=AD39_RS22780;old_locus_tag=AD39_0098 NZ_JJLH01000001.1 Protein Homology CDS 108570 109190 . - 0 ID=cds-WP_001269520.1;Parent=gene-AD39_RS22780;Dbxref=GenBank:WP_001269520.1;Name=WP_001269520.1;Note=Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis.;Ontology_term=GO:0015937,GO:0004140,GO:0005524,GO:0005737;gbkey=CDS;gene=coaE;go_component=cytoplasm|0005737||IEA;go_function=dephospho-CoA kinase activity|0004140||IEA,ATP binding|0005524||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308134.1;locus_tag=AD39_RS22780;product=dephospho-CoA kinase;protein_id=WP_001269520.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 109215 109259 . + . ID=gene-AD39_RS29365;Name=AD39_RS29365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29365 NZ_JJLH01000001.1 Protein Homology CDS 109215 109259 . + 0 ID=cds-WP_120795372.1;Parent=gene-AD39_RS29365;Dbxref=GenBank:WP_120795372.1;Name=WP_120795372.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518737.1;locus_tag=AD39_RS29365;product=protein YacM;protein_id=WP_120795372.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 109415 110458 . + . ID=gene-AD39_RS22775;Name=guaC;gbkey=Gene;gene=guaC;gene_biotype=protein_coding;locus_tag=AD39_RS22775;old_locus_tag=AD39_0099 NZ_JJLH01000001.1 Protein Homology CDS 109415 110458 . + 0 ID=cds-WP_001217338.1;Parent=gene-AD39_RS22775;Dbxref=GenBank:WP_001217338.1;Name=WP_001217338.1;Ontology_term=GO:0009117,GO:0003920,GO:1902560;gbkey=CDS;gene=guaC;go_component=GMP reductase complex|1902560||IEA;go_function=GMP reductase activity|0003920||IEA;go_process=nucleotide metabolic process|0009117||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008461816.1;locus_tag=AD39_RS22775;product=GMP reductase;protein_id=WP_001217338.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 110493 111695 . - . ID=gene-AD39_RS22770;Name=hofC;gbkey=Gene;gene=hofC;gene_biotype=protein_coding;locus_tag=AD39_RS22770;old_locus_tag=AD39_0100 NZ_JJLH01000001.1 Protein Homology CDS 110493 111695 . - 0 ID=cds-WP_000157236.1;Parent=gene-AD39_RS22770;Dbxref=GenBank:WP_000157236.1;Name=WP_000157236.1;Ontology_term=GO:0004827;gbkey=CDS;gene=hofC;go_function=proline-tRNA ligase activity|0004827||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706061.1;locus_tag=AD39_RS22770;product=protein transport protein HofC;protein_id=WP_000157236.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 111685 113070 . - . ID=gene-AD39_RS22765;Name=gspE;gbkey=Gene;gene=gspE;gene_biotype=protein_coding;locus_tag=AD39_RS22765;old_locus_tag=AD39_0101 NZ_JJLH01000001.1 Protein Homology CDS 111685 113070 . - 0 ID=cds-WP_001025170.1;Parent=gene-AD39_RS22765;Dbxref=GenBank:WP_001025170.1;Name=WP_001025170.1;gbkey=CDS;gene=gspE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308138.1;locus_tag=AD39_RS22765;product=type II secretion system protein GspE;protein_id=WP_001025170.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 113080 113520 . - . ID=gene-AD39_RS22760;Name=ppdD;gbkey=Gene;gene=ppdD;gene_biotype=protein_coding;locus_tag=AD39_RS22760;old_locus_tag=AD39_0102 NZ_JJLH01000001.1 Protein Homology CDS 113080 113520 . - 0 ID=cds-WP_000360927.1;Parent=gene-AD39_RS22760;Dbxref=GenBank:WP_000360927.1;Name=WP_000360927.1;gbkey=CDS;gene=ppdD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414650.1;locus_tag=AD39_RS22760;product=prepilin peptidase-dependent pilin;protein_id=WP_000360927.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 113723 114616 . - . ID=gene-AD39_RS22755;Name=nadC;gbkey=Gene;gene=nadC;gene_biotype=protein_coding;locus_tag=AD39_RS22755;old_locus_tag=AD39_0103 NZ_JJLH01000001.1 Protein Homology CDS 113723 114616 . - 0 ID=cds-WP_001135168.1;Parent=gene-AD39_RS22755;Dbxref=GenBank:WP_001135168.1;Name=WP_001135168.1;Ontology_term=GO:0009435,GO:0004514;gbkey=CDS;gene=nadC;go_function=nicotinate-nucleotide diphosphorylase (carboxylating) activity|0004514||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308140.1;locus_tag=AD39_RS22755;product=carboxylating nicotinate-nucleotide diphosphorylase;protein_id=WP_001135168.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 114704 115255 . + . ID=gene-AD39_RS22750;Name=ampD;gbkey=Gene;gene=ampD;gene_biotype=protein_coding;locus_tag=AD39_RS22750;old_locus_tag=AD39_0104 NZ_JJLH01000001.1 Protein Homology CDS 114704 115255 . + 0 ID=cds-WP_000923721.1;Parent=gene-AD39_RS22750;Dbxref=GenBank:WP_000923721.1;Name=WP_000923721.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;gene=ampD;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414652.1;locus_tag=AD39_RS22750;product=1%2C6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD;protein_id=WP_000923721.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 115252 116106 . + . ID=gene-AD39_RS22745;Name=ampE;gbkey=Gene;gene=ampE;gene_biotype=protein_coding;locus_tag=AD39_RS22745;old_locus_tag=AD39_0105 NZ_JJLH01000001.1 Protein Homology CDS 115252 116106 . + 0 ID=cds-WP_000172005.1;Parent=gene-AD39_RS22745;Dbxref=GenBank:WP_000172005.1;Name=WP_000172005.1;gbkey=CDS;gene=ampE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414653.1;locus_tag=AD39_RS22745;product=beta-lactamase regulator AmpE;protein_id=WP_000172005.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 116149 117522 . - . ID=gene-AD39_RS22740;Name=aroP;gbkey=Gene;gene=aroP;gene_biotype=protein_coding;locus_tag=AD39_RS22740;old_locus_tag=AD39_0106 NZ_JJLH01000001.1 Protein Homology CDS 116149 117522 . - 0 ID=cds-WP_000969915.1;Parent=gene-AD39_RS22740;Dbxref=GenBank:WP_000969915.1;Name=WP_000969915.1;Ontology_term=GO:0006865;gbkey=CDS;gene=aroP;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414654.1;locus_tag=AD39_RS22740;product=aromatic amino acid transporter AroP;protein_id=WP_000969915.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 118063 118827 . + . ID=gene-AD39_RS22735;Name=pdhR;gbkey=Gene;gene=pdhR;gene_biotype=protein_coding;locus_tag=AD39_RS22735;old_locus_tag=AD39_0107 NZ_JJLH01000001.1 Protein Homology CDS 118063 118827 . + 0 ID=cds-WP_000331776.1;Parent=gene-AD39_RS22735;Dbxref=GenBank:WP_000331776.1;Name=WP_000331776.1;gbkey=CDS;gene=pdhR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308144.1;locus_tag=AD39_RS22735;product=pyruvate dehydrogenase complex transcriptional repressor PdhR;protein_id=WP_000331776.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 118988 121651 . + . ID=gene-AD39_RS22730;Name=aceE;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;locus_tag=AD39_RS22730;old_locus_tag=AD39_0108 NZ_JJLH01000001.1 Protein Homology CDS 118988 121651 . + 0 ID=cds-WP_000003820.1;Parent=gene-AD39_RS22730;Dbxref=GenBank:WP_000003820.1;Name=WP_000003820.1;Ontology_term=GO:0006086,GO:0004738,GO:0045254;gbkey=CDS;gene=aceE;go_component=pyruvate dehydrogenase complex|0045254||IEA;go_function=pyruvate dehydrogenase activity|0004738||IEA;go_process=pyruvate decarboxylation to acetyl-CoA|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008814576.1;locus_tag=AD39_RS22730;product=pyruvate dehydrogenase (acetyl-transferring)%2C homodimeric type;protein_id=WP_000003820.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 121666 123558 . + . ID=gene-AD39_RS22725;Name=aceF;gbkey=Gene;gene=aceF;gene_biotype=protein_coding;locus_tag=AD39_RS22725;old_locus_tag=AD39_0109 NZ_JJLH01000001.1 Protein Homology CDS 121666 123558 . + 0 ID=cds-WP_000963518.1;Parent=gene-AD39_RS22725;Dbxref=GenBank:WP_000963518.1;Name=WP_000963518.1;Ontology_term=GO:0006096,GO:0004742,GO:0045254;gbkey=CDS;gene=aceF;go_component=pyruvate dehydrogenase complex|0045254||IEA;go_function=dihydrolipoyllysine-residue acetyltransferase activity|0004742||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414657.1;locus_tag=AD39_RS22725;product=pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase;protein_id=WP_000963518.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 123883 125307 . + . ID=gene-AD39_RS22720;Name=lpdA;gbkey=Gene;gene=lpdA;gene_biotype=protein_coding;locus_tag=AD39_RS22720;old_locus_tag=AD39_0110 NZ_JJLH01000001.1 Protein Homology CDS 123883 125307 . + 0 ID=cds-WP_000102485.1;Parent=gene-AD39_RS22720;Dbxref=GenBank:WP_000102485.1;Name=WP_000102485.1;Ontology_term=GO:0004148,GO:0050660;gbkey=CDS;gene=lpdA;go_function=dihydrolipoyl dehydrogenase (NADH) activity|0004148||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001738005.1;locus_tag=AD39_RS22720;product=dihydrolipoyl dehydrogenase;protein_id=WP_000102485.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 125378 127135 . - . ID=gene-AD39_RS22715;Name=yacH;gbkey=Gene;gene=yacH;gene_biotype=protein_coding;locus_tag=AD39_RS22715;old_locus_tag=AD39_0111 NZ_JJLH01000001.1 Protein Homology CDS 125378 127135 . - 0 ID=cds-WP_032282987.1;Parent=gene-AD39_RS22715;Dbxref=GenBank:WP_032282987.1;Name=WP_032282987.1;gbkey=CDS;gene=yacH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308148.1;locus_tag=AD39_RS22715;product=DUF3300 domain-containing protein;protein_id=WP_032282987.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 127490 130087 . + . ID=gene-AD39_RS22710;Name=acnB;gbkey=Gene;gene=acnB;gene_biotype=protein_coding;locus_tag=AD39_RS22710;old_locus_tag=AD39_0112 NZ_JJLH01000001.1 Protein Homology CDS 127490 130087 . + 0 ID=cds-WP_001307570.1;Parent=gene-AD39_RS22710;Dbxref=GenBank:WP_001307570.1;Name=WP_001307570.1;Ontology_term=GO:0006099,GO:0003994,GO:0051539,GO:0005829;gbkey=CDS;gene=acnB;go_component=cytosol|0005829||IEA;go_function=aconitate hydratase activity|0003994||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414660.1;locus_tag=AD39_RS22710;product=bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase;protein_id=WP_001307570.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 130262 130624 . + . ID=gene-AD39_RS22705;Name=yacL;gbkey=Gene;gene=yacL;gene_biotype=protein_coding;locus_tag=AD39_RS22705;old_locus_tag=AD39_0113 NZ_JJLH01000001.1 Protein Homology CDS 130262 130624 . + 0 ID=cds-WP_000384306.1;Parent=gene-AD39_RS22705;Dbxref=GenBank:WP_000384306.1;Name=WP_000384306.1;gbkey=CDS;gene=yacL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414661.2;locus_tag=AD39_RS22705;product=protein YacL;protein_id=WP_000384306.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 130662 131456 . - . ID=gene-AD39_RS22700;Name=speD;gbkey=Gene;gene=speD;gene_biotype=protein_coding;locus_tag=AD39_RS22700;old_locus_tag=AD39_0114 NZ_JJLH01000001.1 Protein Homology CDS 130662 131456 . - 0 ID=cds-WP_000734287.1;Parent=gene-AD39_RS22700;Dbxref=GenBank:WP_000734287.1;Name=WP_000734287.1;Ontology_term=GO:0008295,GO:0004014;gbkey=CDS;gene=speD;go_function=adenosylmethionine decarboxylase activity|0004014||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308151.1;locus_tag=AD39_RS22700;product=adenosylmethionine decarboxylase;protein_id=WP_000734287.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 131472 132338 . - . ID=gene-AD39_RS22695;Name=speE;gbkey=Gene;gene=speE;gene_biotype=protein_coding;locus_tag=AD39_RS22695;old_locus_tag=AD39_0115 NZ_JJLH01000001.1 Protein Homology CDS 131472 132338 . - 0 ID=cds-WP_000818411.1;Parent=gene-AD39_RS22695;Dbxref=GenBank:WP_000818411.1;Name=WP_000818411.1;gbkey=CDS;gene=speE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414663.1;locus_tag=AD39_RS22695;product=polyamine aminopropyltransferase;protein_id=WP_000818411.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 132444 132791 . - . ID=gene-AD39_RS22690;Name=yacC;gbkey=Gene;gene=yacC;gene_biotype=protein_coding;locus_tag=AD39_RS22690;old_locus_tag=AD39_0116 NZ_JJLH01000001.1 Protein Homology CDS 132444 132791 . - 0 ID=cds-WP_001295568.1;Parent=gene-AD39_RS22690;Dbxref=GenBank:WP_001295568.1;Name=WP_001295568.1;gbkey=CDS;gene=yacC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414664.4;locus_tag=AD39_RS22690;product=YacC family pilotin-like protein;protein_id=WP_001295568.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 132957 134507 . + . ID=gene-AD39_RS22685;Name=cueO;gbkey=Gene;gene=cueO;gene_biotype=protein_coding;locus_tag=AD39_RS22685;old_locus_tag=AD39_0117 NZ_JJLH01000001.1 Protein Homology CDS 132957 134507 . + 0 ID=cds-WP_001463136.1;Parent=gene-AD39_RS22685;Dbxref=GenBank:WP_001463136.1;Name=WP_001463136.1;Ontology_term=GO:0005507,GO:0016491;gbkey=CDS;gene=cueO;go_function=copper ion binding|0005507||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414665.1;locus_tag=AD39_RS22685;product=multicopper oxidase CueO;protein_id=WP_001463136.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 134554 136944 . - . ID=gene-AD39_RS22680;Name=gcd;gbkey=Gene;gene=gcd;gene_biotype=protein_coding;locus_tag=AD39_RS22680;old_locus_tag=AD39_0118 NZ_JJLH01000001.1 Protein Homology CDS 134554 136944 . - 0 ID=cds-WP_032282988.1;Parent=gene-AD39_RS22680;Dbxref=GenBank:WP_032282988.1;Name=WP_032282988.1;gbkey=CDS;gene=gcd;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414666.1;locus_tag=AD39_RS22680;product=quinoprotein glucose dehydrogenase;protein_id=WP_032282988.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 137150 137686 . + . ID=gene-AD39_RS22675;Name=hpt;gbkey=Gene;gene=hpt;gene_biotype=protein_coding;locus_tag=AD39_RS22675;old_locus_tag=AD39_0119 NZ_JJLH01000001.1 Protein Homology CDS 137150 137686 . + 0 ID=cds-WP_000683335.1;Parent=gene-AD39_RS22675;Dbxref=GenBank:WP_000683335.1;Name=WP_000683335.1;Ontology_term=GO:0006166;gbkey=CDS;gene=hpt;go_process=purine ribonucleoside salvage|0006166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004204384.1;locus_tag=AD39_RS22675;product=hypoxanthine phosphoribosyltransferase;protein_id=WP_000683335.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 137727 138389 . - . ID=gene-AD39_RS22670;Name=can;gbkey=Gene;gene=can;gene_biotype=protein_coding;locus_tag=AD39_RS22670;old_locus_tag=AD39_0120 NZ_JJLH01000001.1 Protein Homology CDS 137727 138389 . - 0 ID=cds-WP_000651599.1;Parent=gene-AD39_RS22670;Dbxref=GenBank:WP_000651599.1;Name=WP_000651599.1;Ontology_term=GO:0015976,GO:0004089,GO:0008270;gbkey=CDS;gene=can;go_function=carbonate dehydratase activity|0004089||IEA,zinc ion binding|0008270||IEA;go_process=carbon utilization|0015976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414668.1;locus_tag=AD39_RS22670;product=carbonate dehydratase;protein_id=WP_000651599.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 138498 139424 . + . ID=gene-AD39_RS22665;Name=yadG;gbkey=Gene;gene=yadG;gene_biotype=protein_coding;locus_tag=AD39_RS22665;old_locus_tag=AD39_0121 NZ_JJLH01000001.1 Protein Homology CDS 138498 139424 . + 0 ID=cds-WP_000150637.1;Parent=gene-AD39_RS22665;Dbxref=GenBank:WP_000150637.1;Name=WP_000150637.1;Ontology_term=GO:0005524,GO:0016887,GO:0140359;gbkey=CDS;gene=yadG;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414669.1;locus_tag=AD39_RS22665;product=ABC transporter ATP-binding protein;protein_id=WP_000150637.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 139421 140191 . + . ID=gene-AD39_RS22660;Name=yadH;gbkey=Gene;gene=yadH;gene_biotype=protein_coding;locus_tag=AD39_RS22660;old_locus_tag=AD39_0122 NZ_JJLH01000001.1 Protein Homology CDS 139421 140191 . + 0 ID=cds-WP_000972203.1;Parent=gene-AD39_RS22660;Dbxref=GenBank:WP_000972203.1;Name=WP_000972203.1;Ontology_term=GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;gene=yadH;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001747261.1;locus_tag=AD39_RS22660;product=ABC transporter permease;protein_id=WP_000972203.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 140296 140736 . + . ID=gene-AD39_RS22655;Name=yadI;gbkey=Gene;gene=yadI;gene_biotype=protein_coding;locus_tag=AD39_RS22655;old_locus_tag=AD39_0123 NZ_JJLH01000001.1 Protein Homology CDS 140296 140736 . + 0 ID=cds-WP_032287473.1;Parent=gene-AD39_RS22655;Dbxref=GenBank:WP_032287473.1;Name=WP_032287473.1;Ontology_term=GO:0008643,GO:0009401,GO:0016310,GO:1902495;gbkey=CDS;gene=yadI;go_component=transmembrane transporter complex|1902495||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414671.1;locus_tag=AD39_RS22655;product=PTS sugar transporter subunit IIA;protein_id=WP_032287473.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 140800 142029 . + . ID=gene-AD39_RS22650;Name=yadE;gbkey=Gene;gene=yadE;gene_biotype=protein_coding;locus_tag=AD39_RS22650;old_locus_tag=AD39_0124 NZ_JJLH01000001.1 Protein Homology CDS 140800 142029 . + 0 ID=cds-WP_000277878.1;Parent=gene-AD39_RS22650;Dbxref=GenBank:WP_000277878.1;Name=WP_000277878.1;Ontology_term=GO:0005975,GO:0016787,GO:0046872;gbkey=CDS;gene=yadE;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308161.1;locus_tag=AD39_RS22650;product=polysaccharide deacetylase family protein;protein_id=WP_000277878.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 142033 142413 . - . ID=gene-AD39_RS22645;Name=panD;gbkey=Gene;gene=panD;gene_biotype=protein_coding;locus_tag=AD39_RS22645;old_locus_tag=AD39_0125 NZ_JJLH01000001.1 Protein Homology CDS 142033 142413 . - 0 ID=cds-WP_000621515.1;Parent=gene-AD39_RS22645;Dbxref=GenBank:WP_000621515.1;Name=WP_000621515.1;Ontology_term=GO:0006523,GO:0004068;gbkey=CDS;gene=panD;go_function=aspartate 1-decarboxylase activity|0004068||IEA;go_process=alanine biosynthetic process|0006523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124704.1;locus_tag=AD39_RS22645;product=aspartate 1-decarboxylase;protein_id=WP_000621515.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 142687 143589 . + . ID=gene-AD39_RS22640;Name=rpnC;gbkey=Gene;gene=rpnC;gene_biotype=protein_coding;locus_tag=AD39_RS22640;old_locus_tag=AD39_0127 NZ_JJLH01000001.1 Protein Homology CDS 142687 143589 . + 0 ID=cds-WP_032282989.1;Parent=gene-AD39_RS22640;Dbxref=GenBank:WP_032282989.1;Name=WP_032282989.1;gbkey=CDS;gene=rpnC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414674.1;locus_tag=AD39_RS22640;product=recombination-promoting nuclease RpnC;protein_id=WP_032282989.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 143663 144514 . - . ID=gene-AD39_RS22635;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=AD39_RS22635;old_locus_tag=AD39_0128 NZ_JJLH01000001.1 Protein Homology CDS 143663 144514 . - 0 ID=cds-WP_000905383.1;Parent=gene-AD39_RS22635;Dbxref=GenBank:WP_000905383.1;Name=WP_000905383.1;Ontology_term=GO:0015940,GO:0004592;gbkey=CDS;gene=panC;go_function=pantoate-beta-alanine ligase activity|0004592||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414675.1;locus_tag=AD39_RS22635;product=pantoate--beta-alanine ligase;protein_id=WP_000905383.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 144526 145320 . - . ID=gene-AD39_RS22630;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=AD39_RS22630;old_locus_tag=AD39_0129 NZ_JJLH01000001.1 Protein Homology CDS 144526 145320 . - 0 ID=cds-WP_003909609.1;Parent=gene-AD39_RS22630;Dbxref=GenBank:WP_003909609.1;Name=WP_003909609.1;Ontology_term=GO:0015940,GO:0003864;gbkey=CDS;gene=panB;go_function=3-methyl-2-oxobutanoate hydroxymethyltransferase activity|0003864||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000805487.1;locus_tag=AD39_RS22630;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=WP_003909609.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 145433 146776 . - . ID=gene-AD39_RS22625;Name=AD39_RS22625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22625;old_locus_tag=AD39_0130 NZ_JJLH01000001.1 Protein Homology CDS 145433 146776 . - 0 ID=cds-WP_001331232.1;Parent=gene-AD39_RS22625;Dbxref=GenBank:WP_001331232.1;Name=WP_001331232.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001462196.1;locus_tag=AD39_RS22625;product=fimbrial-like adhesin;protein_id=WP_001331232.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 146760 147356 . - . ID=gene-AD39_RS22620;Name=AD39_RS22620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22620;old_locus_tag=AD39_0131 NZ_JJLH01000001.1 Protein Homology CDS 146760 147356 . - 0 ID=cds-WP_000553764.1;Parent=gene-AD39_RS22620;Dbxref=GenBank:WP_000553764.1;Name=WP_000553764.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414678.1;locus_tag=AD39_RS22620;product=fimbrial-like protein;protein_id=WP_000553764.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 147383 147985 . - . ID=gene-AD39_RS22615;Name=yadL;gbkey=Gene;gene=yadL;gene_biotype=protein_coding;locus_tag=AD39_RS22615;old_locus_tag=AD39_0132 NZ_JJLH01000001.1 Protein Homology CDS 147383 147985 . - 0 ID=cds-WP_000143205.1;Parent=gene-AD39_RS22615;Dbxref=GenBank:WP_000143205.1;Name=WP_000143205.1;gbkey=CDS;gene=yadL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000143198.1;locus_tag=AD39_RS22615;product=fimbrial-like protein YadL;protein_id=WP_000143205.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 148000 148569 . - . ID=gene-AD39_RS0123280;Name=yadM;gbkey=Gene;gene=yadM;gene_biotype=protein_coding;locus_tag=AD39_RS0123280;old_locus_tag=AD39_0133 NZ_JJLH01000001.1 Protein Homology CDS 148000 148569 . - 0 ID=cds-WP_000591057.1;Parent=gene-AD39_RS0123280;Dbxref=GenBank:WP_000591057.1;Name=WP_000591057.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=yadM;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414680.4;locus_tag=AD39_RS0123280;product=fimbrial protein;protein_id=WP_000591057.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 148586 151186 . - . ID=gene-AD39_RS22610;Name=htrE;gbkey=Gene;gene=htrE;gene_biotype=protein_coding;locus_tag=AD39_RS22610;old_locus_tag=AD39_0135 NZ_JJLH01000001.1 Protein Homology CDS 148586 151186 . - 0 ID=cds-WP_032286013.1;Parent=gene-AD39_RS22610;Dbxref=GenBank:WP_032286013.1;Name=WP_032286013.1;gbkey=CDS;gene=htrE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414681.1;locus_tag=AD39_RS22610;product=Yad fimbria usher protein HtrE;protein_id=WP_032286013.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 151221 151961 . - . ID=gene-AD39_RS22605;Name=yadV;gbkey=Gene;gene=yadV;gene_biotype=protein_coding;locus_tag=AD39_RS22605;old_locus_tag=AD39_0136 NZ_JJLH01000001.1 Protein Homology CDS 151221 151961 . - 0 ID=cds-WP_000465930.1;Parent=gene-AD39_RS22605;Dbxref=GenBank:WP_000465930.1;Name=WP_000465930.1;gbkey=CDS;gene=yadV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414682.1;locus_tag=AD39_RS22605;product=fimbrial chaperone;protein_id=WP_000465930.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 152066 152650 . - . ID=gene-AD39_RS22600;Name=yadN;gbkey=Gene;gene=yadN;gene_biotype=protein_coding;locus_tag=AD39_RS22600;old_locus_tag=AD39_0138 NZ_JJLH01000001.1 Protein Homology CDS 152066 152650 . - 0 ID=cds-WP_000038438.1;Parent=gene-AD39_RS22600;Dbxref=GenBank:WP_000038438.1;Name=WP_000038438.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=yadN;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414683.1;locus_tag=AD39_RS22600;product=fimbrial protein;protein_id=WP_000038438.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 153020 153499 . - . ID=gene-AD39_RS22595;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=AD39_RS22595;old_locus_tag=AD39_0140 NZ_JJLH01000001.1 Protein Homology CDS 153020 153499 . - 0 ID=cds-WP_000215124.1;Parent=gene-AD39_RS22595;Dbxref=GenBank:WP_000215124.1;Name=WP_000215124.1;gbkey=CDS;gene=folK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706090.1;locus_tag=AD39_RS22595;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase;protein_id=WP_000215124.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 153496 154893 . - . ID=gene-AD39_RS22590;Name=pcnB;gbkey=Gene;gene=pcnB;gene_biotype=protein_coding;locus_tag=AD39_RS22590;old_locus_tag=AD39_0141 NZ_JJLH01000001.1 Protein Homology CDS 153496 154893 . - 0 ID=cds-WP_010723084.1;Parent=gene-AD39_RS22590;Dbxref=GenBank:WP_010723084.1;Name=WP_010723084.1;Ontology_term=GO:0003723,GO:1990817;gbkey=CDS;gene=pcnB;go_function=RNA binding|0003723||IEA,poly(A) RNA polymerase activity|1990817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414685.4;locus_tag=AD39_RS22590;product=polynucleotide adenylyltransferase PcnB;protein_id=WP_010723084.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 154953 155849 . - . ID=gene-AD39_RS22585;Name=gluQRS;gbkey=Gene;gene=gluQRS;gene_biotype=protein_coding;locus_tag=AD39_RS22585;old_locus_tag=AD39_0142 NZ_JJLH01000001.1 Protein Homology CDS 154953 155849 . - 0 ID=cds-WP_000132718.1;Parent=gene-AD39_RS22585;Dbxref=GenBank:WP_000132718.1;Name=WP_000132718.1;Ontology_term=GO:0006400,GO:0043039,GO:0000166,GO:0004812,GO:0005524;gbkey=CDS;gene=gluQRS;go_function=nucleotide binding|0000166||IEA,aminoacyl-tRNA ligase activity|0004812||IEA,ATP binding|0005524||IEA;go_process=tRNA modification|0006400||IEA,tRNA aminoacylation|0043039||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001432381.1;locus_tag=AD39_RS22585;product=tRNA glutamyl-Q(34) synthetase GluQRS;protein_id=WP_000132718.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 155916 156371 . - . ID=gene-AD39_RS22580;Name=dksA;gbkey=Gene;gene=dksA;gene_biotype=protein_coding;locus_tag=AD39_RS22580;old_locus_tag=AD39_0143 NZ_JJLH01000001.1 Protein Homology CDS 155916 156371 . - 0 ID=cds-WP_001155227.1;Parent=gene-AD39_RS22580;Dbxref=GenBank:WP_001155227.1;Name=WP_001155227.1;gbkey=CDS;gene=dksA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002209354.1;locus_tag=AD39_RS22580;product=RNA polymerase-binding protein DksA;protein_id=WP_001155227.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 156549 157253 . - . ID=gene-AD39_RS22575;Name=sfsA;gbkey=Gene;gene=sfsA;gene_biotype=protein_coding;locus_tag=AD39_RS22575;old_locus_tag=AD39_0144 NZ_JJLH01000001.1 Protein Homology CDS 156549 157253 . - 0 ID=cds-WP_000396036.1;Parent=gene-AD39_RS22575;Dbxref=GenBank:WP_000396036.1;Name=WP_000396036.1;Ontology_term=GO:0003677;gbkey=CDS;gene=sfsA;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308177.1;locus_tag=AD39_RS22575;product=DNA/RNA nuclease SfsA;protein_id=WP_000396036.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 157268 157798 . - . ID=gene-AD39_RS22570;Name=thpR;gbkey=Gene;gene=thpR;gene_biotype=protein_coding;locus_tag=AD39_RS22570;old_locus_tag=AD39_0145 NZ_JJLH01000001.1 Protein Homology CDS 157268 157798 . - 0 ID=cds-WP_001294697.1;Parent=gene-AD39_RS22570;Dbxref=GenBank:WP_001294697.1;Name=WP_001294697.1;Ontology_term=GO:0004113,GO:0008664;gbkey=CDS;gene=thpR;go_function=2'%2C3'-cyclic-nucleotide 3'-phosphodiesterase activity|0004113||IEA,RNA 2'%2C3'-cyclic 3'-phosphodiesterase activity|0008664||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414689.4;locus_tag=AD39_RS22570;product=RNA 2'%2C3'-cyclic phosphodiesterase;protein_id=WP_001294697.1;transl_table=11 NZ_JJLH01000001.1 RefSeq gene 157872 160301 . + . ID=gene-AD39_RS22565;Name=hrpB;gbkey=Gene;gene=hrpB;gene_biotype=protein_coding;locus_tag=AD39_RS22565;old_locus_tag=AD39_0146 NZ_JJLH01000001.1 Protein Homology CDS 157872 160301 . + 0 ID=cds-WP_001542630.1;Parent=gene-AD39_RS22565;Dbxref=GenBank:WP_001542630.1;Name=WP_001542630.1;Ontology_term=GO:0004386,GO:0005524;gbkey=CDS;gene=hrpB;go_function=helicase activity|0004386||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414690.4;locus_tag=AD39_RS22565;product=ATP-dependent helicase HrpB;protein_id=WP_001542630.1;transl_table=11 ##sequence-region NZ_JJLH01000002.1 1 58999 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000002.1 RefSeq region 1 58999 . + . ID=NZ_JJLH01000002.1:1..58999;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000002.1 RefSeq gene 182 2716 . + . ID=gene-AD39_RS22560;Name=mrcB;gbkey=Gene;gene=mrcB;gene_biotype=protein_coding;locus_tag=AD39_RS22560;old_locus_tag=AD39_0147 NZ_JJLH01000002.1 Protein Homology CDS 182 2716 . + 0 ID=cds-WP_000918166.1;Parent=gene-AD39_RS22560;Dbxref=GenBank:WP_000918166.1;Name=WP_000918166.1;Ontology_term=GO:0009252,GO:0046677,GO:0008658,GO:0008955,GO:0009274;gbkey=CDS;gene=mrcB;go_component=peptidoglycan-based cell wall|0009274||IEA;go_function=penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,response to antibiotic|0046677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706097.2;locus_tag=AD39_RS22560;product=bifunctional glycosyl transferase/transpeptidase;protein_id=WP_000918166.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 2936 5179 . + . ID=gene-AD39_RS22555;Name=fhuA;gbkey=Gene;gene=fhuA;gene_biotype=protein_coding;locus_tag=AD39_RS22555;old_locus_tag=AD39_0149 NZ_JJLH01000002.1 Protein Homology CDS 2936 5179 . + 0 ID=cds-WP_000124438.1;Parent=gene-AD39_RS22555;Dbxref=GenBank:WP_000124438.1;Name=WP_000124438.1;Ontology_term=GO:0015891,GO:0015344,GO:0038023,GO:0009279;gbkey=CDS;gene=fhuA;go_component=cell outer membrane|0009279||IEA;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA,signaling receptor activity|0038023||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414692.1;locus_tag=AD39_RS22555;product=ferrichrome porin FhuA;protein_id=WP_000124438.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 5230 6027 . + . ID=gene-AD39_RS22550;Name=fhuC;gbkey=Gene;gene=fhuC;gene_biotype=protein_coding;locus_tag=AD39_RS22550;old_locus_tag=AD39_0150 NZ_JJLH01000002.1 Protein Homology CDS 5230 6027 . + 0 ID=cds-WP_001158931.1;Parent=gene-AD39_RS22550;Dbxref=GenBank:WP_001158931.1;Name=WP_001158931.1;Ontology_term=GO:0005524;gbkey=CDS;gene=fhuC;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414693.1;locus_tag=AD39_RS22550;product=Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;protein_id=WP_001158931.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 6027 6917 . + . ID=gene-AD39_RS22545;Name=fhuD;gbkey=Gene;gene=fhuD;gene_biotype=protein_coding;locus_tag=AD39_RS22545;old_locus_tag=AD39_0151 NZ_JJLH01000002.1 Protein Homology CDS 6027 6917 . + 0 ID=cds-WP_000015990.1;Parent=gene-AD39_RS22545;Dbxref=GenBank:WP_000015990.1;Name=WP_000015990.1;gbkey=CDS;gene=fhuD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414694.1;locus_tag=AD39_RS22545;product=Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD;protein_id=WP_000015990.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 6914 8896 . + . ID=gene-AD39_RS22540;Name=fhuB;gbkey=Gene;gene=fhuB;gene_biotype=protein_coding;locus_tag=AD39_RS22540;old_locus_tag=AD39_0152 NZ_JJLH01000002.1 Protein Homology CDS 6914 8896 . + 0 ID=cds-WP_032287474.1;Parent=gene-AD39_RS22540;Dbxref=GenBank:WP_032287474.1;Name=WP_032287474.1;Ontology_term=GO:0022857;gbkey=CDS;gene=fhuB;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414695.1;locus_tag=AD39_RS22540;product=Fe(3+)-hydroxamate ABC transporter permease FhuB;protein_id=WP_032287474.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 8931 10211 . - . ID=gene-AD39_RS22535;Name=hemL;gbkey=Gene;gene=hemL;gene_biotype=protein_coding;locus_tag=AD39_RS22535;old_locus_tag=AD39_0153 NZ_JJLH01000002.1 Protein Homology CDS 8931 10211 . - 0 ID=cds-WP_000045304.1;Parent=gene-AD39_RS22535;Dbxref=GenBank:WP_000045304.1;Name=WP_000045304.1;Ontology_term=GO:0033014,GO:0042286;gbkey=CDS;gene=hemL;go_function=glutamate-1-semialdehyde 2%2C1-aminomutase activity|0042286||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020233394.1;locus_tag=AD39_RS22535;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=WP_000045304.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 10377 10424 . + . ID=gene-AD39_RS29605;Name=yadX;gbkey=Gene;gene=yadX;gene_biotype=protein_coding;locus_tag=AD39_RS29605 NZ_JJLH01000002.1 Protein Homology CDS 10377 10424 . + 0 ID=cds-WP_211180485.1;Parent=gene-AD39_RS29605;Dbxref=GenBank:WP_211180485.1;Name=WP_211180485.1;gbkey=CDS;gene=yadX;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051173.1;locus_tag=AD39_RS29605;product=protein YadX;protein_id=WP_211180485.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 10436 11857 . + . ID=gene-AD39_RS22530;Name=clcA;gbkey=Gene;gene=clcA;gene_biotype=protein_coding;locus_tag=AD39_RS22530;old_locus_tag=AD39_0154 NZ_JJLH01000002.1 Protein Homology CDS 10436 11857 . + 0 ID=cds-WP_000845394.1;Parent=gene-AD39_RS22530;Dbxref=GenBank:WP_000845394.1;Name=WP_000845394.1;Ontology_term=GO:0006821,GO:0055085,GO:0005247,GO:0005886;gbkey=CDS;gene=clcA;go_component=plasma membrane|0005886||IEA;go_function=voltage-gated chloride channel activity|0005247||IEA;go_process=chloride transport|0006821||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414697.1;locus_tag=AD39_RS22530;product=H(+)/Cl(-) exchange transporter ClcA;protein_id=WP_000845394.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 11881 11946 . + . ID=gene-AD39_RS28825;Name=yadW;gbkey=Gene;gene=yadW;gene_biotype=protein_coding;locus_tag=AD39_RS28825 NZ_JJLH01000002.1 Protein Homology CDS 11881 11946 . + 0 ID=cds-WP_120795373.1;Parent=gene-AD39_RS28825;Dbxref=GenBank:WP_120795373.1;Name=WP_120795373.1;gbkey=CDS;gene=yadW;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518738.1;locus_tag=AD39_RS28825;product=small protein YadW;protein_id=WP_120795373.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 11939 12283 . + . ID=gene-AD39_RS22525;Name=erpA;gbkey=Gene;gene=erpA;gene_biotype=protein_coding;locus_tag=AD39_RS22525;old_locus_tag=AD39_0155 NZ_JJLH01000002.1 Protein Homology CDS 11939 12283 . + 0 ID=cds-WP_001295564.1;Parent=gene-AD39_RS22525;Dbxref=GenBank:WP_001295564.1;Name=WP_001295564.1;Ontology_term=GO:0016226,GO:0051536;gbkey=CDS;gene=erpA;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001295564.1;locus_tag=AD39_RS22525;product=iron-sulfur cluster insertion protein ErpA;protein_id=WP_001295564.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 12330 12953 . - . ID=gene-AD39_RS22520;Name=yadS;gbkey=Gene;gene=yadS;gene_biotype=protein_coding;locus_tag=AD39_RS22520;old_locus_tag=AD39_0156 NZ_JJLH01000002.1 Protein Homology CDS 12330 12953 . - 0 ID=cds-WP_000964221.1;Parent=gene-AD39_RS22520;Dbxref=GenBank:WP_000964221.1;Name=WP_000964221.1;gbkey=CDS;gene=yadS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414699.1;locus_tag=AD39_RS22520;product=TRIC cation channel family protein;protein_id=WP_000964221.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 12991 13791 . - . ID=gene-AD39_RS22515;Name=btuF;gbkey=Gene;gene=btuF;gene_biotype=protein_coding;locus_tag=AD39_RS22515;old_locus_tag=AD39_0157 NZ_JJLH01000002.1 Protein Homology CDS 12991 13791 . - 0 ID=cds-WP_001129927.1;Parent=gene-AD39_RS22515;Dbxref=GenBank:WP_001129927.1;Name=WP_001129927.1;Ontology_term=GO:0005524,GO:0031419;gbkey=CDS;gene=btuF;go_function=ATP binding|0005524||IEA,cobalamin binding|0031419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414700.1;locus_tag=AD39_RS22515;product=vitamin B12 ABC transporter substrate-binding protein BtuF;protein_id=WP_001129927.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 13784 14482 . - . ID=gene-AD39_RS22510;Name=mtnN;gbkey=Gene;gene=mtnN;gene_biotype=protein_coding;locus_tag=AD39_RS22510;old_locus_tag=AD39_0158 NZ_JJLH01000002.1 Protein Homology CDS 13784 14482 . - 0 ID=cds-WP_000689844.1;Parent=gene-AD39_RS22510;Dbxref=GenBank:WP_000689844.1;Name=WP_000689844.1;Ontology_term=GO:0009164,GO:0019509,GO:0008782,GO:0008930;gbkey=CDS;gene=mtnN;go_function=adenosylhomocysteine nucleosidase activity|0008782||IEA,methylthioadenosine nucleosidase activity|0008930||IEA;go_process=nucleoside catabolic process|0009164||IEA,L-methionine salvage from methylthioadenosine|0019509||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308190.1;locus_tag=AD39_RS22510;product=5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase;protein_id=WP_000689844.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 14566 16083 . + . ID=gene-AD39_RS22505;Name=dgt;gbkey=Gene;gene=dgt;gene_biotype=protein_coding;locus_tag=AD39_RS22505;old_locus_tag=AD39_0159 NZ_JJLH01000002.1 Protein Homology CDS 14566 16083 . + 0 ID=cds-WP_000057067.1;Parent=gene-AD39_RS22505;Dbxref=GenBank:WP_000057067.1;Name=WP_000057067.1;Ontology_term=GO:0006203,GO:0000287,GO:0008832;gbkey=CDS;gene=dgt;go_function=magnesium ion binding|0000287||IEA,dGTPase activity|0008832||IEA;go_process=dGTP catabolic process|0006203||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414702.1;locus_tag=AD39_RS22505;product=dGTPase;protein_id=WP_000057067.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 16213 17637 . + . ID=gene-AD39_RS22500;Name=degP;gbkey=Gene;gene=degP;gene_biotype=protein_coding;locus_tag=AD39_RS22500;old_locus_tag=AD39_0160 NZ_JJLH01000002.1 Protein Homology CDS 16213 17637 . + 0 ID=cds-WP_000753945.1;Parent=gene-AD39_RS22500;Dbxref=GenBank:WP_000753945.1;Name=WP_000753945.1;gbkey=CDS;gene=degP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308192.1;locus_tag=AD39_RS22500;product=serine endoprotease DegP;protein_id=WP_000753945.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 17792 18949 . + . ID=gene-AD39_RS22495;Name=cdaR;gbkey=Gene;gene=cdaR;gene_biotype=protein_coding;locus_tag=AD39_RS22495;old_locus_tag=AD39_0161 NZ_JJLH01000002.1 Protein Homology CDS 17792 18949 . + 0 ID=cds-WP_000929439.1;Parent=gene-AD39_RS22495;Dbxref=GenBank:WP_000929439.1;Name=WP_000929439.1;gbkey=CDS;gene=cdaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308193.1;locus_tag=AD39_RS22495;product=DNA-binding transcriptional regulator CdaR;protein_id=WP_000929439.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 19038 19424 . - . ID=gene-AD39_RS22490;Name=yaeH;gbkey=Gene;gene=yaeH;gene_biotype=protein_coding;locus_tag=AD39_RS22490;old_locus_tag=AD39_0162 NZ_JJLH01000002.1 Protein Homology CDS 19038 19424 . - 0 ID=cds-WP_000272188.1;Parent=gene-AD39_RS22490;Dbxref=GenBank:WP_000272188.1;Name=WP_000272188.1;gbkey=CDS;gene=yaeH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000272186.1;locus_tag=AD39_RS22490;product=DUF3461 family protein;protein_id=WP_000272188.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 19585 20397 . - . ID=gene-AD39_RS22485;Name=yaeI;gbkey=Gene;gene=yaeI;gene_biotype=protein_coding;locus_tag=AD39_RS22485;old_locus_tag=AD39_0163 NZ_JJLH01000002.1 Protein Homology CDS 19585 20397 . - 0 ID=cds-WP_032282992.1;Parent=gene-AD39_RS22485;Dbxref=GenBank:WP_032282992.1;Name=WP_032282992.1;gbkey=CDS;gene=yaeI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414706.2;locus_tag=AD39_RS22485;product=phosphodiesterase YaeI;protein_id=WP_032282992.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 20450 21274 . - . ID=gene-AD39_RS22480;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=AD39_RS22480;old_locus_tag=AD39_0164 NZ_JJLH01000002.1 Protein Homology CDS 20450 21274 . - 0 ID=cds-WP_032282993.1;Parent=gene-AD39_RS22480;Dbxref=GenBank:WP_032282993.1;Name=WP_032282993.1;Ontology_term=GO:0009089,GO:0008666;gbkey=CDS;gene=dapD;go_function=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase activity|0008666||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132123.1;locus_tag=AD39_RS22480;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=WP_032282993.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 21305 23977 . - . ID=gene-AD39_RS22475;Name=glnD;gbkey=Gene;gene=glnD;gene_biotype=protein_coding;locus_tag=AD39_RS22475;old_locus_tag=AD39_0165 NZ_JJLH01000002.1 Protein Homology CDS 21305 23977 . - 0 ID=cds-WP_032282994.1;Parent=gene-AD39_RS22475;Dbxref=GenBank:WP_032282994.1;Name=WP_032282994.1;Ontology_term=GO:0008152,GO:0016779;gbkey=CDS;gene=glnD;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308196.1;locus_tag=AD39_RS22475;product=bifunctional uridylyltransferase/uridylyl-removing protein GlnD;protein_id=WP_032282994.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 24039 24833 . - . ID=gene-AD39_RS22470;Name=map;gbkey=Gene;gene=map;gene_biotype=protein_coding;locus_tag=AD39_RS22470;old_locus_tag=AD39_0166 NZ_JJLH01000002.1 Protein Homology CDS 24039 24833 . - 0 ID=cds-WP_001018194.1;Parent=gene-AD39_RS22470;Dbxref=GenBank:WP_001018194.1;Name=WP_001018194.1;Ontology_term=GO:0006508,GO:0070006;gbkey=CDS;gene=map;go_function=metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308197.1;locus_tag=AD39_RS22470;product=type I methionyl aminopeptidase;protein_id=WP_001018194.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 25201 25926 . + . ID=gene-AD39_RS22465;Name=rpsB;gbkey=Gene;gene=rpsB;gene_biotype=protein_coding;locus_tag=AD39_RS22465;old_locus_tag=AD39_0167 NZ_JJLH01000002.1 Protein Homology CDS 25201 25926 . + 0 ID=cds-WP_000246884.1;Parent=gene-AD39_RS22465;Dbxref=GenBank:WP_000246884.1;Name=WP_000246884.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsB;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132117.1;locus_tag=AD39_RS22465;product=30S ribosomal protein S2;protein_id=WP_000246884.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 26184 27035 . + . ID=gene-AD39_RS22460;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=AD39_RS22460;old_locus_tag=AD39_0169 NZ_JJLH01000002.1 Protein Homology CDS 26184 27035 . + 0 ID=cds-WP_000818114.1;Parent=gene-AD39_RS22460;Dbxref=GenBank:WP_000818114.1;Name=WP_000818114.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=tsf;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132116.1;locus_tag=AD39_RS22460;product=translation elongation factor Ts;protein_id=WP_000818114.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 27182 27907 . + . ID=gene-AD39_RS22455;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;locus_tag=AD39_RS22455;old_locus_tag=AD39_0170 NZ_JJLH01000002.1 Protein Homology CDS 27182 27907 . + 0 ID=cds-WP_000224573.1;Parent=gene-AD39_RS22455;Dbxref=GenBank:WP_000224573.1;Name=WP_000224573.1;Ontology_term=GO:0006221,GO:0015949,GO:0033862,GO:0005737;gbkey=CDS;gene=pyrH;go_component=cytoplasm|0005737||IEA;go_function=UMP kinase activity|0033862||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA,nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000224576.1;locus_tag=AD39_RS22455;product=UMP kinase;protein_id=WP_000224573.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 28199 28756 . + . ID=gene-AD39_RS22450;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=AD39_RS22450;old_locus_tag=AD39_0171 NZ_JJLH01000002.1 Protein Homology CDS 28199 28756 . + 0 ID=cds-WP_000622418.1;Parent=gene-AD39_RS22450;Dbxref=GenBank:WP_000622418.1;Name=WP_000622418.1;Ontology_term=GO:0006412,GO:0008135;gbkey=CDS;gene=frr;go_function=translation factor activity%2C RNA binding|0008135||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000622421.1;locus_tag=AD39_RS22450;product=ribosome recycling factor;protein_id=WP_000622418.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 28848 30044 . + . ID=gene-AD39_RS22445;Name=ispC;gbkey=Gene;gene=ispC;gene_biotype=protein_coding;locus_tag=AD39_RS22445;old_locus_tag=AD39_0172 NZ_JJLH01000002.1 Protein Homology CDS 28848 30044 . + 0 ID=cds-WP_000811923.1;Parent=gene-AD39_RS22445;Dbxref=GenBank:WP_000811923.1;Name=WP_000811923.1;Ontology_term=GO:0008299,GO:0005515,GO:0030604,GO:0046872,GO:0070402;gbkey=CDS;gene=ispC;go_function=protein binding|0005515||IEA,1-deoxy-D-xylulose-5-phosphate reductoisomerase activity|0030604||IEA,metal ion binding|0046872||IEA,NADPH binding|0070402||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414715.1;locus_tag=AD39_RS22445;product=1-deoxy-D-xylulose-5-phosphate reductoisomerase;protein_id=WP_000811923.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 30233 30991 . + . ID=gene-AD39_RS22440;Name=ispU;gbkey=Gene;gene=ispU;gene_biotype=protein_coding;gene_synonym=uppS;locus_tag=AD39_RS22440;old_locus_tag=AD39_0173 NZ_JJLH01000002.1 Protein Homology CDS 30233 30991 . + 0 ID=cds-WP_001295562.1;Parent=gene-AD39_RS22440;Dbxref=GenBank:WP_001295562.1;Name=WP_001295562.1;Ontology_term=GO:0043164,GO:0004659,GO:0008834;gbkey=CDS;gene=ispU;go_function=prenyltransferase activity|0004659||IEA,ditrans%2Cpolycis-undecaprenyl-diphosphate synthase [(2E%2C6E)-farnesyl-diphosphate specific] activity|0008834||IEA;go_process=Gram-negative-bacterium-type cell wall biogenesis|0043164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308203.2;locus_tag=AD39_RS22440;product=(2E%2C6E)-farnesyl-diphosphate-specific ditrans%2Cpolycis-undecaprenyl-diphosphate synthase;protein_id=WP_001295562.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 31004 31861 . + . ID=gene-AD39_RS22435;Name=cdsA;gbkey=Gene;gene=cdsA;gene_biotype=protein_coding;locus_tag=AD39_RS22435;old_locus_tag=AD39_0175 NZ_JJLH01000002.1 Protein Homology CDS 31004 31861 . + 0 ID=cds-WP_032282995.1;Parent=gene-AD39_RS22435;Dbxref=GenBank:WP_032282995.1;Name=WP_032282995.1;Ontology_term=GO:0016772;gbkey=CDS;gene=cdsA;go_function=transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414717.2;locus_tag=AD39_RS22435;product=phosphatidate cytidylyltransferase;protein_id=WP_032282995.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 31873 33225 . + . ID=gene-AD39_RS22430;Name=rseP;gbkey=Gene;gene=rseP;gene_biotype=protein_coding;locus_tag=AD39_RS22430;old_locus_tag=AD39_0176 NZ_JJLH01000002.1 Protein Homology CDS 31873 33225 . + 0 ID=cds-WP_021534273.1;Parent=gene-AD39_RS22430;Dbxref=GenBank:WP_021534273.1;Name=WP_021534273.1;Ontology_term=GO:0006508,GO:0004222,GO:0005515,GO:0016020;gbkey=CDS;gene=rseP;go_component=membrane|0016020||IEA;go_function=metalloendopeptidase activity|0004222||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308205.1;locus_tag=AD39_RS22430;product=sigma E protease regulator RseP;protein_id=WP_021534273.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 33255 35687 . + . ID=gene-AD39_RS22425;Name=bamA;gbkey=Gene;gene=bamA;gene_biotype=protein_coding;locus_tag=AD39_RS22425;old_locus_tag=AD39_0177 NZ_JJLH01000002.1 Protein Homology CDS 33255 35687 . + 0 ID=cds-WP_001240896.1;Parent=gene-AD39_RS22425;Dbxref=GenBank:WP_001240896.1;Name=WP_001240896.1;Ontology_term=GO:0071709,GO:0009279;gbkey=CDS;gene=bamA;go_component=cell outer membrane|0009279||IEA;go_process=membrane assembly|0071709||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308206.1;locus_tag=AD39_RS22425;product=outer membrane protein assembly factor BamA;protein_id=WP_001240896.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 35809 36294 . + . ID=gene-AD39_RS22420;Name=skp;gbkey=Gene;gene=skp;gene_biotype=protein_coding;gene_synonym=hlpA,ompH;locus_tag=AD39_RS22420;old_locus_tag=AD39_0178 NZ_JJLH01000002.1 Protein Homology CDS 35809 36294 . + 0 ID=cds-WP_000758956.1;Parent=gene-AD39_RS22420;Dbxref=GenBank:WP_000758956.1;Name=WP_000758956.1;gbkey=CDS;gene=skp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308207.1;locus_tag=AD39_RS22420;product=molecular chaperone Skp;protein_id=WP_000758956.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 36298 37323 . + . ID=gene-AD39_RS22415;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=AD39_RS22415;old_locus_tag=AD39_0179 NZ_JJLH01000002.1 Protein Homology CDS 36298 37323 . + 0 ID=cds-WP_001479042.1;Parent=gene-AD39_RS22415;Dbxref=GenBank:WP_001479042.1;Name=WP_001479042.1;Ontology_term=GO:0009245,GO:0016410;gbkey=CDS;gene=lpxD;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132101.1;locus_tag=AD39_RS22415;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_001479042.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 37428 37883 . + . ID=gene-AD39_RS22410;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=AD39_RS22410;old_locus_tag=AD39_0180 NZ_JJLH01000002.1 Protein Homology CDS 37428 37883 . + 0 ID=cds-WP_000210739.1;Parent=gene-AD39_RS22410;Dbxref=GenBank:WP_000210739.1;Name=WP_000210739.1;gbkey=CDS;gene=fabZ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000210741.1;locus_tag=AD39_RS22410;product=3-hydroxyacyl-ACP dehydratase FabZ;protein_id=WP_000210739.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 37887 38675 . + . ID=gene-AD39_RS22405;Name=lpxA;gbkey=Gene;gene=lpxA;gene_biotype=protein_coding;locus_tag=AD39_RS22405;old_locus_tag=AD39_0181 NZ_JJLH01000002.1 Protein Homology CDS 37887 38675 . + 0 ID=cds-WP_000565966.1;Parent=gene-AD39_RS22405;Dbxref=GenBank:WP_000565966.1;Name=WP_000565966.1;Ontology_term=GO:0008610,GO:0008780;gbkey=CDS;gene=lpxA;go_function=acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity|0008780||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132096.1;locus_tag=AD39_RS22405;product=acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase;protein_id=WP_000565966.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 38675 39823 . + . ID=gene-AD39_RS22400;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=AD39_RS22400;old_locus_tag=AD39_0182 NZ_JJLH01000002.1 Protein Homology CDS 38675 39823 . + 0 ID=cds-WP_000139659.1;Parent=gene-AD39_RS22400;Dbxref=GenBank:WP_000139659.1;Name=WP_000139659.1;Ontology_term=GO:0009245,GO:0008915;gbkey=CDS;gene=lpxB;go_function=lipid-A-disaccharide synthase activity|0008915||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414724.1;locus_tag=AD39_RS22400;product=lipid-A-disaccharide synthase;protein_id=WP_000139659.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 39820 40416 . + . ID=gene-AD39_RS22395;Name=rnhB;gbkey=Gene;gene=rnhB;gene_biotype=protein_coding;locus_tag=AD39_RS22395;old_locus_tag=AD39_0183 NZ_JJLH01000002.1 Protein Homology CDS 39820 40416 . + 0 ID=cds-WP_000569430.1;Parent=gene-AD39_RS22395;Dbxref=GenBank:WP_000569430.1;Name=WP_000569430.1;Ontology_term=GO:0003723,GO:0004523;gbkey=CDS;gene=rnhB;go_function=RNA binding|0003723||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414725.1;locus_tag=AD39_RS22395;product=ribonuclease HII;protein_id=WP_000569430.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 40453 43935 . + . ID=gene-AD39_RS22390;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;locus_tag=AD39_RS22390;old_locus_tag=AD39_0184 NZ_JJLH01000002.1 Protein Homology CDS 40453 43935 . + 0 ID=cds-WP_001471003.1;Parent=gene-AD39_RS22390;Dbxref=GenBank:WP_001471003.1;Name=WP_001471003.1;Ontology_term=GO:0006260,GO:0003676,GO:0008408;gbkey=CDS;gene=dnaE;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308213.1;locus_tag=AD39_RS22390;product=DNA polymerase III subunit alpha;protein_id=WP_001471003.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 43948 44907 . + . ID=gene-AD39_RS22385;Name=accA;gbkey=Gene;gene=accA;gene_biotype=protein_coding;locus_tag=AD39_RS22385;old_locus_tag=AD39_0185 NZ_JJLH01000002.1 Protein Homology CDS 43948 44907 . + 0 ID=cds-WP_000055741.1;Parent=gene-AD39_RS22385;Dbxref=GenBank:WP_000055741.1;Name=WP_000055741.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accA;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132091.1;locus_tag=AD39_RS22385;product=acetyl-CoA carboxylase carboxyl transferase subunit alpha;protein_id=WP_000055741.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 45006 47147 . + . ID=gene-AD39_RS22380;Name=ldcC;gbkey=Gene;gene=ldcC;gene_biotype=protein_coding;locus_tag=AD39_RS22380;old_locus_tag=AD39_0186 NZ_JJLH01000002.1 Protein Homology CDS 45006 47147 . + 0 ID=cds-WP_001021030.1;Parent=gene-AD39_RS22380;Dbxref=GenBank:WP_001021030.1;Name=WP_001021030.1;gbkey=CDS;gene=ldcC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414728.1;locus_tag=AD39_RS22380;product=lysine decarboxylase LdcC;protein_id=WP_001021030.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 47204 47593 . + . ID=gene-AD39_RS22375;Name=yaeR;gbkey=Gene;gene=yaeR;gene_biotype=protein_coding;locus_tag=AD39_RS22375;old_locus_tag=AD39_0187 NZ_JJLH01000002.1 Protein Homology CDS 47204 47593 . + 0 ID=cds-WP_000901098.1;Parent=gene-AD39_RS22375;Dbxref=GenBank:WP_000901098.1;Name=WP_000901098.1;gbkey=CDS;gene=yaeR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308216.2;locus_tag=AD39_RS22375;product=VOC family protein;protein_id=WP_000901098.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 47658 48956 . + . ID=gene-AD39_RS22370;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=AD39_RS22370;old_locus_tag=AD39_0188 NZ_JJLH01000002.1 Protein Homology CDS 47658 48956 . + 0 ID=cds-WP_000176573.1;Parent=gene-AD39_RS22370;Dbxref=GenBank:WP_000176573.1;Name=WP_000176573.1;Ontology_term=GO:0008033,GO:0000166,GO:0005524,GO:0016879;gbkey=CDS;gene=tilS;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA,ligase activity%2C forming carbon-nitrogen bonds|0016879||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706133.1;locus_tag=AD39_RS22370;product=tRNA lysidine(34) synthetase TilS;protein_id=WP_000176573.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 49005 49265 . - . ID=gene-AD39_RS22365;Name=rof;gbkey=Gene;gene=rof;gene_biotype=protein_coding;locus_tag=AD39_RS22365;old_locus_tag=AD39_0189 NZ_JJLH01000002.1 Protein Homology CDS 49005 49265 . - 0 ID=cds-WP_000062312.1;Parent=gene-AD39_RS22365;Dbxref=GenBank:WP_000062312.1;Name=WP_000062312.1;gbkey=CDS;gene=rof;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706134.1;locus_tag=AD39_RS22365;product=Rho-binding antiterminator;protein_id=WP_000062312.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 49252 49452 . - . ID=gene-AD39_RS22360;Name=yaeP;gbkey=Gene;gene=yaeP;gene_biotype=protein_coding;locus_tag=AD39_RS22360;old_locus_tag=AD39_0190 NZ_JJLH01000002.1 Protein Homology CDS 49252 49452 . - 0 ID=cds-WP_000417058.1;Parent=gene-AD39_RS22360;Dbxref=GenBank:WP_000417058.1;Name=WP_000417058.1;gbkey=CDS;gene=yaeP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133967.1;locus_tag=AD39_RS22360;product=YaeP family protein;protein_id=WP_000417058.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 49618 50163 . + . ID=gene-AD39_RS22355;Name=yaeQ;gbkey=Gene;gene=yaeQ;gene_biotype=protein_coding;locus_tag=AD39_RS22355;old_locus_tag=AD39_0191 NZ_JJLH01000002.1 Protein Homology CDS 49618 50163 . + 0 ID=cds-WP_001185293.1;Parent=gene-AD39_RS22355;Dbxref=GenBank:WP_001185293.1;Name=WP_001185293.1;gbkey=CDS;gene=yaeQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414732.1;locus_tag=AD39_RS22355;product=YaeQ family protein;protein_id=WP_001185293.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 50160 50582 . + . ID=gene-AD39_RS22350;Name=arfB;gbkey=Gene;gene=arfB;gene_biotype=protein_coding;locus_tag=AD39_RS22350;old_locus_tag=AD39_0192 NZ_JJLH01000002.1 Protein Homology CDS 50160 50582 . + 0 ID=cds-WP_000635545.1;Parent=gene-AD39_RS22350;Dbxref=GenBank:WP_000635545.1;Name=WP_000635545.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=arfB;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308220.1;locus_tag=AD39_RS22350;product=alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB;protein_id=WP_000635545.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 50596 51306 . + . ID=gene-AD39_RS22345;Name=nlpE;gbkey=Gene;gene=nlpE;gene_biotype=protein_coding;gene_synonym=cutF;locus_tag=AD39_RS22345;old_locus_tag=AD39_0193 NZ_JJLH01000002.1 Protein Homology CDS 50596 51306 . + 0 ID=cds-WP_032282996.1;Parent=gene-AD39_RS22345;Dbxref=GenBank:WP_032282996.1;Name=WP_032282996.1;Note=NlpE%2C an outer membrane lipoprotein%2C interacts directly with CpxA%2C the sensor histidine kinase of the Cpx system for response to envelope stress.;gbkey=CDS;gene=nlpE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706138.1;locus_tag=AD39_RS22345;product=envelope stress response activation lipoprotein NlpE;protein_id=WP_032282996.1;transl_table=11 NZ_JJLH01000002.1 RefSeq pseudogene 51461 52284 . - . ID=gene-AD39_RS22335;Name=yaeF;gbkey=Gene;gene=yaeF;gene_biotype=pseudogene;locus_tag=AD39_RS22335;old_locus_tag=AD39_0195;pseudo=true NZ_JJLH01000002.1 Protein Homology CDS 51461 52284 . - 0 ID=cds-AD39_RS22335;Parent=gene-AD39_RS22335;Note=frameshifted;gbkey=CDS;gene=yaeF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414735.4;locus_tag=AD39_RS22335;product=YaeF family permuted papain-like enzyme;pseudo=true;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 52338 54056 . - . ID=gene-AD39_RS22330;Name=proS;gbkey=Gene;gene=proS;gene_biotype=protein_coding;locus_tag=AD39_RS22330;old_locus_tag=AD39_0196 NZ_JJLH01000002.1 Protein Homology CDS 52338 54056 . - 0 ID=cds-WP_001260716.1;Parent=gene-AD39_RS22330;Dbxref=GenBank:WP_001260716.1;Name=WP_001260716.1;Ontology_term=GO:0006433,GO:0004827,GO:0005524,GO:0005737;gbkey=CDS;gene=proS;go_component=cytoplasm|0005737||IEA;go_function=proline-tRNA ligase activity|0004827||IEA,ATP binding|0005524||IEA;go_process=prolyl-tRNA aminoacylation|0006433||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133963.1;locus_tag=AD39_RS22330;product=proline--tRNA ligase;protein_id=WP_001260716.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 54167 54874 . - . ID=gene-AD39_RS22325;Name=tsaA;gbkey=Gene;gene=tsaA;gene_biotype=protein_coding;locus_tag=AD39_RS22325;old_locus_tag=AD39_0197 NZ_JJLH01000002.1 Protein Homology CDS 54167 54874 . - 0 ID=cds-WP_000094031.1;Parent=gene-AD39_RS22325;Dbxref=GenBank:WP_000094031.1;Name=WP_000094031.1;Ontology_term=GO:0006400,GO:0008757,GO:0005737;gbkey=CDS;gene=tsaA;go_component=cytoplasm|0005737||IEA;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414737.1;locus_tag=AD39_RS22325;product=tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO;protein_id=WP_000094031.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 54871 55275 . - . ID=gene-AD39_RS22320;Name=rcsF;gbkey=Gene;gene=rcsF;gene_biotype=protein_coding;locus_tag=AD39_RS22320;old_locus_tag=AD39_0198 NZ_JJLH01000002.1 Protein Homology CDS 54871 55275 . - 0 ID=cds-WP_001202329.1;Parent=gene-AD39_RS22320;Dbxref=GenBank:WP_001202329.1;Name=WP_001202329.1;gbkey=CDS;gene=rcsF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414738.1;locus_tag=AD39_RS22320;product=Rcs stress response system protein RcsF;protein_id=WP_001202329.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 55366 56208 . - . ID=gene-AD39_RS22315;Name=metQ;gbkey=Gene;gene=metQ;gene_biotype=protein_coding;locus_tag=AD39_RS22315;old_locus_tag=AD39_0199 NZ_JJLH01000002.1 Protein Homology CDS 55366 56208 . - 0 ID=cds-WP_001460459.1;Parent=gene-AD39_RS22315;Dbxref=GenBank:WP_001460459.1;Name=WP_001460459.1;gbkey=CDS;gene=metQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706143.1;locus_tag=AD39_RS22315;product=methionine ABC transporter substrate-binding lipoprotein MetQ;protein_id=WP_001460459.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 56248 56901 . - . ID=gene-AD39_RS22310;Name=metI;gbkey=Gene;gene=metI;gene_biotype=protein_coding;locus_tag=AD39_RS22310;old_locus_tag=AD39_0200 NZ_JJLH01000002.1 Protein Homology CDS 56248 56901 . - 0 ID=cds-WP_001294600.1;Parent=gene-AD39_RS22310;Dbxref=GenBank:WP_001294600.1;Name=WP_001294600.1;gbkey=CDS;gene=metI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132073.1;locus_tag=AD39_RS22310;product=methionine ABC transporter permease MetI;protein_id=WP_001294600.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 56894 57925 . - . ID=gene-AD39_RS22305;Name=metN;gbkey=Gene;gene=metN;gene_biotype=protein_coding;locus_tag=AD39_RS22305;old_locus_tag=AD39_0201 NZ_JJLH01000002.1 Protein Homology CDS 56894 57925 . - 0 ID=cds-WP_000593994.1;Parent=gene-AD39_RS22305;Dbxref=GenBank:WP_000593994.1;Name=WP_000593994.1;Ontology_term=GO:0048473,GO:0005524,GO:0033232,GO:0009276;gbkey=CDS;gene=metN;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA;go_function=ATP binding|0005524||IEA,ABC-type D-methionine transporter activity|0033232||IEA;go_process=D-methionine transmembrane transport|0048473||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014168731.1;locus_tag=AD39_RS22305;product=methionine ABC transporter ATP-binding protein MetN;protein_id=WP_000593994.1;transl_table=11 NZ_JJLH01000002.1 RefSeq gene 58113 58685 . + . ID=gene-AD39_RS22300;Name=gmhB;gbkey=Gene;gene=gmhB;gene_biotype=protein_coding;locus_tag=AD39_RS22300;old_locus_tag=AD39_0202 NZ_JJLH01000002.1 Protein Homology CDS 58113 58685 . + 0 ID=cds-WP_001140186.1;Parent=gene-AD39_RS22300;Dbxref=GenBank:WP_001140186.1;Name=WP_001140186.1;Ontology_term=GO:0005975,GO:0016791;gbkey=CDS;gene=gmhB;go_function=phosphatase activity|0016791||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001608862.1;locus_tag=AD39_RS22300;product=D-glycero-beta-D-manno-heptose 1%2C7-bisphosphate 7-phosphatase;protein_id=WP_001140186.1;transl_table=11 ##sequence-region NZ_JJLH01000003.1 1 421 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000003.1 RefSeq region 1 421 . + . ID=NZ_JJLH01000003.1:1..421;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000003.1 RefSeq gene 1 421 . + . ID=gene-AD39_RS0123290;Name=AD39_RS0123290;end_range=421,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0123290;partial=true;start_range=.,1 NZ_JJLH01000003.1 cmsearch rRNA 1 421 . + . ID=rna-AD39_RS0123290;Parent=gene-AD39_RS0123290;Dbxref=RFAM:RF02541;end_range=421,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0123290;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_JJLH01000003.1 cmsearch exon 1 421 . + . ID=exon-AD39_RS0123290-1;Parent=rna-AD39_RS0123290;Dbxref=RFAM:RF02541;end_range=421,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0123290;partial=true;product=23S ribosomal RNA;start_range=.,1 ##sequence-region NZ_JJLH01000004.1 1 8712 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000004.1 RefSeq region 1 8712 . + . ID=NZ_JJLH01000004.1:1..8712;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000004.1 RefSeq gene 145 1281 . + . ID=gene-AD39_RS22295;Name=AD39_RS22295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22295;old_locus_tag=AD39_0203 NZ_JJLH01000004.1 Protein Homology CDS 145 1281 . + 0 ID=cds-WP_000420795.1;Parent=gene-AD39_RS22295;Dbxref=GenBank:WP_000420795.1;Name=WP_000420795.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000420980.1;locus_tag=AD39_RS22295;product=ISAs1-like element ISEc1 family transposase;protein_id=WP_000420795.1;transl_table=11 NZ_JJLH01000004.1 RefSeq pseudogene 1292 1462 . + . ID=gene-AD39_RS22290;Name=dkgB;gbkey=Gene;gene=dkgB;gene_biotype=pseudogene;locus_tag=AD39_RS22290;old_locus_tag=AD39_0204;partial=true;pseudo=true;start_range=.,1292 NZ_JJLH01000004.1 Protein Homology CDS 1292 1462 . + 0 ID=cds-AD39_RS22290;Parent=gene-AD39_RS22290;Note=catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;gene=dkgB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414743.1;locus_tag=AD39_RS22290;partial=true;product=2%2C5-didehydrogluconate reductase DkgB;pseudo=true;start_range=.,1292;transl_table=11 NZ_JJLH01000004.1 RefSeq gene 1459 2373 . - . ID=gene-AD39_RS22285;Name=yafC;gbkey=Gene;gene=yafC;gene_biotype=protein_coding;locus_tag=AD39_RS22285;old_locus_tag=AD39_0205 NZ_JJLH01000004.1 Protein Homology CDS 1459 2373 . - 0 ID=cds-WP_023155851.1;Parent=gene-AD39_RS22285;Dbxref=GenBank:WP_023155851.1;Name=WP_023155851.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yafC;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414744.1;locus_tag=AD39_RS22285;product=DNA-binding transcriptional regulator YafC;protein_id=WP_023155851.1;transl_table=11 NZ_JJLH01000004.1 RefSeq gene 2614 3414 . + . ID=gene-AD39_RS22280;Name=yafD;gbkey=Gene;gene=yafD;gene_biotype=protein_coding;locus_tag=AD39_RS22280;old_locus_tag=AD39_0206 NZ_JJLH01000004.1 Protein Homology CDS 2614 3414 . + 0 ID=cds-WP_001230983.1;Parent=gene-AD39_RS22280;Dbxref=GenBank:WP_001230983.1;Name=WP_001230983.1;gbkey=CDS;gene=yafD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414745.1;locus_tag=AD39_RS22280;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_001230983.1;transl_table=11 NZ_JJLH01000004.1 RefSeq gene 3492 4262 . + . ID=gene-AD39_RS22275;Name=AD39_RS22275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22275;old_locus_tag=AD39_0207 NZ_JJLH01000004.1 Protein Homology CDS 3492 4262 . + 0 ID=cds-WP_023155852.1;Parent=gene-AD39_RS22275;Dbxref=GenBank:WP_023155852.1;Name=WP_023155852.1;Ontology_term=GO:0008168,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308233.1;locus_tag=AD39_RS22275;product=class I SAM-dependent methyltransferase;protein_id=WP_023155852.1;transl_table=11 NZ_JJLH01000004.1 RefSeq gene 4310 5668 . - . ID=gene-AD39_RS22270;Name=mltD;gbkey=Gene;gene=mltD;gene_biotype=protein_coding;locus_tag=AD39_RS22270;old_locus_tag=AD39_0208 NZ_JJLH01000004.1 Protein Homology CDS 4310 5668 . - 0 ID=cds-WP_000644685.1;Parent=gene-AD39_RS22270;Dbxref=GenBank:WP_000644685.1;Name=WP_000644685.1;Ontology_term=GO:0000270,GO:0008933,GO:0016020;gbkey=CDS;gene=mltD;go_component=membrane|0016020||IEA;go_function=peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414747.1;locus_tag=AD39_RS22270;product=murein transglycosylase D;protein_id=WP_000644685.1;transl_table=11 NZ_JJLH01000004.1 RefSeq gene 5740 6495 . - . ID=gene-AD39_RS22265;Name=gloB;gbkey=Gene;gene=gloB;gene_biotype=protein_coding;locus_tag=AD39_RS22265;old_locus_tag=AD39_0209 NZ_JJLH01000004.1 Protein Homology CDS 5740 6495 . - 0 ID=cds-WP_001052707.1;Parent=gene-AD39_RS22265;Dbxref=GenBank:WP_001052707.1;Name=WP_001052707.1;Ontology_term=GO:0019243,GO:0004416;gbkey=CDS;gene=gloB;go_function=hydroxyacylglutathione hydrolase activity|0004416||IEA;go_process=methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione|0019243||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308235.1;locus_tag=AD39_RS22265;product=hydroxyacylglutathione hydrolase;protein_id=WP_001052707.1;transl_table=11 NZ_JJLH01000004.1 RefSeq gene 6529 7251 . + . ID=gene-AD39_RS22260;Name=yafS;gbkey=Gene;gene=yafS;gene_biotype=protein_coding;locus_tag=AD39_RS22260;old_locus_tag=AD39_0210 NZ_JJLH01000004.1 Protein Homology CDS 6529 7251 . + 0 ID=cds-WP_001295200.1;Parent=gene-AD39_RS22260;Dbxref=GenBank:WP_001295200.1;Name=WP_001295200.1;Ontology_term=GO:0032259,GO:0008168,GO:0008757,GO:1904047;gbkey=CDS;gene=yafS;go_function=methyltransferase activity|0008168||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414749.2;locus_tag=AD39_RS22260;product=class I SAM-dependent methyltransferase;protein_id=WP_001295200.1;transl_table=11 NZ_JJLH01000004.1 RefSeq gene 7248 7715 . - . ID=gene-AD39_RS22255;Name=rnhA;gbkey=Gene;gene=rnhA;gene_biotype=protein_coding;locus_tag=AD39_RS22255;old_locus_tag=AD39_0211 NZ_JJLH01000004.1 Protein Homology CDS 7248 7715 . - 0 ID=cds-WP_000917883.1;Parent=gene-AD39_RS22255;Dbxref=GenBank:WP_000917883.1;Name=WP_000917883.1;Ontology_term=GO:0003676,GO:0004523;gbkey=CDS;gene=rnhA;go_function=nucleic acid binding|0003676||IEA,RNA-DNA hybrid ribonuclease activity|0004523||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308237.1;locus_tag=AD39_RS22255;product=ribonuclease HI;protein_id=WP_000917883.1;transl_table=11 NZ_JJLH01000004.1 RefSeq gene 7780 8511 . + . ID=gene-AD39_RS22250;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=protein_coding;locus_tag=AD39_RS22250;old_locus_tag=AD39_0212 NZ_JJLH01000004.1 Protein Homology CDS 7780 8511 . + 0 ID=cds-WP_001366128.1;Parent=gene-AD39_RS22250;Dbxref=GenBank:WP_001366128.1;Name=WP_001366128.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=dnaQ;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706156.2;locus_tag=AD39_RS22250;product=DNA polymerase III subunit epsilon;protein_id=WP_001366128.1;transl_table=11 ##sequence-region NZ_JJLH01000005.1 1 2127 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000005.1 RefSeq region 1 2127 . + . ID=NZ_JJLH01000005.1:1..2127;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000005.1 RefSeq gene 145 1281 . + . ID=gene-AD39_RS22240;Name=AD39_RS22240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22240;old_locus_tag=AD39_0214 NZ_JJLH01000005.1 Protein Homology CDS 145 1281 . + 0 ID=cds-WP_000420795.1-2;Parent=gene-AD39_RS22240;Dbxref=GenBank:WP_000420795.1;Name=WP_000420795.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000420980.1;locus_tag=AD39_RS22240;product=ISAs1-like element ISEc1 family transposase;protein_id=WP_000420795.1;transl_table=11 NZ_JJLH01000005.1 RefSeq pseudogene 1293 2120 . + . ID=gene-AD39_RS22235;Name=AD39_RS22235;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS22235;old_locus_tag=AD39_0215;partial=true;pseudo=true;start_range=.,1293 NZ_JJLH01000005.1 Protein Homology CDS 1293 2120 . + 0 ID=cds-AD39_RS22235;Parent=gene-AD39_RS22235;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000503215.1;locus_tag=AD39_RS22235;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;start_range=.,1293;transl_table=11 ##sequence-region NZ_JJLH01000006.1 1 27299 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000006.1 RefSeq region 1 27299 . + . ID=NZ_JJLH01000006.1:1..27299;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000006.1 RefSeq gene 1 580 . + . ID=gene-AD39_RS22230;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=protein_coding;locus_tag=AD39_RS22230;old_locus_tag=AD39_0216;partial=true;start_range=.,1 NZ_JJLH01000006.1 Protein Homology CDS 1 580 . + 1 ID=cds-WP_032287475.1;Parent=gene-AD39_RS22230;Dbxref=GenBank:WP_032287475.1;Name=WP_032287475.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=dnaQ;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706156.2;locus_tag=AD39_RS22230;partial=true;product=DNA polymerase III subunit epsilon;protein_id=WP_032287475.1;start_range=.,1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 713 789 . + . ID=gene-AD39_RS22225;Name=AD39_RS22225;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS22225;old_locus_tag=AD39_0217 NZ_JJLH01000006.1 tRNAscan-SE tRNA 713 789 . + . ID=rna-AD39_RS22225;Parent=gene-AD39_RS22225;anticodon=(pos:747..749);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS22225;product=tRNA-Asp NZ_JJLH01000006.1 tRNAscan-SE exon 713 789 . + . ID=exon-AD39_RS22225-1;Parent=rna-AD39_RS22225;anticodon=(pos:747..749);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS22225;product=tRNA-Asp NZ_JJLH01000006.1 RefSeq gene 888 1658 . - . ID=gene-AD39_RS22220;Name=yafV;gbkey=Gene;gene=yafV;gene_biotype=protein_coding;locus_tag=AD39_RS22220;old_locus_tag=AD39_0218 NZ_JJLH01000006.1 Protein Homology CDS 888 1658 . - 0 ID=cds-WP_023155853.1;Parent=gene-AD39_RS22220;Dbxref=GenBank:WP_023155853.1;Name=WP_023155853.1;gbkey=CDS;gene=yafV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308273.1;locus_tag=AD39_RS22220;product=2-oxoglutaramate amidase;protein_id=WP_023155853.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 1839 2285 . + . ID=gene-AD39_RS22215;Name=ivy;gbkey=Gene;gene=ivy;gene_biotype=protein_coding;locus_tag=AD39_RS22215;old_locus_tag=AD39_0219 NZ_JJLH01000006.1 Protein Homology CDS 1839 2285 . + 0 ID=cds-WP_001308392.1;Parent=gene-AD39_RS22215;Dbxref=GenBank:WP_001308392.1;Name=WP_001308392.1;gbkey=CDS;gene=ivy;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308274.2;locus_tag=AD39_RS22215;product=Ivy family C-type lysozyme inhibitor;protein_id=WP_001308392.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 2328 4772 . - . ID=gene-AD39_RS22210;Name=fadE;gbkey=Gene;gene=fadE;gene_biotype=protein_coding;locus_tag=AD39_RS22210;old_locus_tag=AD39_0220 NZ_JJLH01000006.1 Protein Homology CDS 2328 4772 . - 0 ID=cds-WP_000973082.1;Parent=gene-AD39_RS22210;Dbxref=GenBank:WP_000973082.1;Name=WP_000973082.1;Ontology_term=GO:0033539,GO:0003995,GO:0050660;gbkey=CDS;gene=fadE;go_function=acyl-CoA dehydrogenase activity|0003995||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=fatty acid beta-oxidation using acyl-CoA dehydrogenase|0033539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414756.2;locus_tag=AD39_RS22210;product=acyl-CoA dehydrogenase FadE;protein_id=WP_000973082.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 5012 5590 . + . ID=gene-AD39_RS22205;Name=lpcA;gbkey=Gene;gene=lpcA;gene_biotype=protein_coding;locus_tag=AD39_RS22205;old_locus_tag=AD39_0221 NZ_JJLH01000006.1 Protein Homology CDS 5012 5590 . + 0 ID=cds-WP_000284050.1;Parent=gene-AD39_RS22205;Dbxref=GenBank:WP_000284050.1;Name=WP_000284050.1;Ontology_term=GO:1901135,GO:0008968;gbkey=CDS;gene=lpcA;go_function=D-sedoheptulose 7-phosphate isomerase activity|0008968||IEA;go_process=carbohydrate derivative metabolic process|1901135||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308276.1;locus_tag=AD39_RS22205;product=D-sedoheptulose 7-phosphate isomerase;protein_id=WP_000284050.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 5799 6566 . + . ID=gene-AD39_RS22200;Name=yafJ;gbkey=Gene;gene=yafJ;gene_biotype=protein_coding;locus_tag=AD39_RS22200;old_locus_tag=AD39_0222 NZ_JJLH01000006.1 Protein Homology CDS 5799 6566 . + 0 ID=cds-WP_032283006.1;Parent=gene-AD39_RS22200;Dbxref=GenBank:WP_032283006.1;Name=WP_032283006.1;Ontology_term=GO:0006541,GO:0016740;gbkey=CDS;gene=yafJ;go_function=transferase activity|0016740||IEA;go_process=glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414758.1;locus_tag=AD39_RS22200;product=class II glutamine amidotransferase;protein_id=WP_032283006.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 6537 7277 . - . ID=gene-AD39_RS22195;Name=dpaA;gbkey=Gene;gene=dpaA;gene_biotype=protein_coding;locus_tag=AD39_RS22195;old_locus_tag=AD39_0223 NZ_JJLH01000006.1 Protein Homology CDS 6537 7277 . - 0 ID=cds-WP_001225679.1;Parent=gene-AD39_RS22195;Dbxref=GenBank:WP_001225679.1;Name=WP_001225679.1;gbkey=CDS;gene=dpaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308278.1;locus_tag=AD39_RS22195;product=peptidoglycan meso-diaminopimelic acid protein amidase;protein_id=WP_001225679.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 7569 8327 . + . ID=gene-AD39_RS22190;Name=yafL;gbkey=Gene;gene=yafL;gene_biotype=protein_coding;locus_tag=AD39_RS22190;old_locus_tag=AD39_0224 NZ_JJLH01000006.1 Protein Homology CDS 7569 8327 . + 0 ID=cds-WP_024172591.1;Parent=gene-AD39_RS22190;Dbxref=GenBank:WP_024172591.1;Name=WP_024172591.1;Ontology_term=GO:0000270,GO:0006508,GO:0008233,GO:0008234,GO:0016787;gbkey=CDS;gene=yafL;go_function=peptidase activity|0008233||IEA,cysteine-type peptidase activity|0008234||IEA,hydrolase activity|0016787||IEA;go_process=peptidoglycan metabolic process|0000270||IEA,proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012599877.1;locus_tag=AD39_RS22190;product=C40 family peptidase;protein_id=WP_024172591.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 8503 9000 . + . ID=gene-AD39_RS0123295;Name=rayT;gbkey=Gene;gene=rayT;gene_biotype=protein_coding;locus_tag=AD39_RS0123295 NZ_JJLH01000006.1 Protein Homology CDS 8503 9000 . + 0 ID=cds-WP_000006256.1;Parent=gene-AD39_RS0123295;Dbxref=GenBank:WP_000006256.1;Name=WP_000006256.1;gbkey=CDS;gene=rayT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706228.1;locus_tag=AD39_RS0123295;product=REP-associated tyrosine transposase RayT;protein_id=WP_000006256.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 9318 11411 . - . ID=gene-AD39_RS22185;Name=AD39_RS22185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22185;old_locus_tag=AD39_0229 NZ_JJLH01000006.1 Protein Homology CDS 9318 11411 . - 0 ID=cds-WP_032286029.1;Parent=gene-AD39_RS22185;Dbxref=GenBank:WP_032286029.1;Name=WP_032286029.1;Ontology_term=GO:0009306,GO:0044780,GO:0071978;gbkey=CDS;go_process=protein secretion|0009306||IEA,bacterial-type flagellum assembly|0044780||IEA,bacterial-type flagellum-dependent swarming motility|0071978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001140833.1;locus_tag=AD39_RS22185;product=flagellar biosynthesis protein FlhA;protein_id=WP_032286029.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 11395 12534 . - . ID=gene-AD39_RS22180;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=AD39_RS22180;old_locus_tag=AD39_0230 NZ_JJLH01000006.1 Protein Homology CDS 11395 12534 . - 0 ID=cds-WP_032287476.1;Parent=gene-AD39_RS22180;Dbxref=GenBank:WP_032287476.1;Name=WP_032287476.1;Ontology_term=GO:0009306,GO:0015031,GO:0044780,GO:0016020;gbkey=CDS;gene=flhB;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA,protein transport|0015031||IEA,bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016236920.1;locus_tag=AD39_RS22180;product=flagellar type III secretion system protein FlhB;protein_id=WP_032287476.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 12524 13306 . - . ID=gene-AD39_RS22175;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;locus_tag=AD39_RS22175;old_locus_tag=AD39_0231 NZ_JJLH01000006.1 Protein Homology CDS 12524 13306 . - 0 ID=cds-WP_001260507.1;Parent=gene-AD39_RS22175;Dbxref=GenBank:WP_001260507.1;Name=WP_001260507.1;Ontology_term=GO:0006605,GO:0044780,GO:0016020;gbkey=CDS;gene=fliR;go_component=membrane|0016020||IEA;go_process=protein targeting|0006605||IEA,bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001260509.1;locus_tag=AD39_RS22175;product=flagellar biosynthetic protein FliR;protein_id=WP_001260507.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 13308 13580 . - . ID=gene-AD39_RS22170;Name=AD39_RS22170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22170;old_locus_tag=AD39_0232 NZ_JJLH01000006.1 Protein Homology CDS 13308 13580 . - 0 ID=cds-WP_001341234.1;Parent=gene-AD39_RS22170;Dbxref=GenBank:WP_001341234.1;Name=WP_001341234.1;Ontology_term=GO:0009306,GO:0044780,GO:0005886,GO:0009425;gbkey=CDS;go_component=plasma membrane|0005886||IEA,bacterial-type flagellum basal body|0009425||IEA;go_process=protein secretion|0009306||IEA,bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001341234.1;locus_tag=AD39_RS22170;product=flagellar biosynthetic protein FliQ;protein_id=WP_001341234.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 13583 14335 . - . ID=gene-AD39_RS22165;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=AD39_RS22165;old_locus_tag=AD39_0233 NZ_JJLH01000006.1 Protein Homology CDS 13583 14335 . - 0 ID=cds-WP_032283011.1;Parent=gene-AD39_RS22165;Dbxref=GenBank:WP_032283011.1;Name=WP_032283011.1;Note=The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly.;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;gene=fliP;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001538309.1;locus_tag=AD39_RS22165;product=flagellar type III secretion system pore protein FliP;protein_id=WP_032283011.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 14332 14703 . - . ID=gene-AD39_RS22160;Name=AD39_RS22160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22160;old_locus_tag=AD39_0234 NZ_JJLH01000006.1 Protein Homology CDS 14332 14703 . - 0 ID=cds-WP_000043127.1;Parent=gene-AD39_RS22160;Dbxref=GenBank:WP_000043127.1;Name=WP_000043127.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016233859.1;locus_tag=AD39_RS22160;product=FliM/FliN family flagellar motor switch protein;protein_id=WP_000043127.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 14696 15547 . - . ID=gene-AD39_RS22155;Name=AD39_RS22155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22155;old_locus_tag=AD39_0235 NZ_JJLH01000006.1 Protein Homology CDS 14696 15547 . - 0 ID=cds-WP_001754873.1;Parent=gene-AD39_RS22155;Dbxref=GenBank:WP_001754873.1;Name=WP_001754873.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000922508.1;locus_tag=AD39_RS22155;product=FliM/FliN family flagellar motor switch protein;protein_id=WP_001754873.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 15934 16920 . + . ID=gene-AD39_RS22150;Name=AD39_RS22150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22150;old_locus_tag=AD39_0237 NZ_JJLH01000006.1 Protein Homology CDS 15934 16920 . + 0 ID=cds-WP_032287477.1;Parent=gene-AD39_RS22150;Dbxref=GenBank:WP_032287477.1;Name=WP_032287477.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001292201.1;locus_tag=AD39_RS22150;product=sigma-54 interaction domain-containing protein;protein_id=WP_032287477.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 16935 17276 . + . ID=gene-AD39_RS22145;Name=AD39_RS22145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22145;old_locus_tag=AD39_0238 NZ_JJLH01000006.1 Protein Homology CDS 16935 17276 . + 0 ID=cds-WP_023568996.1;Parent=gene-AD39_RS22145;Dbxref=GenBank:WP_023568996.1;Name=WP_023568996.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001538312.1;locus_tag=AD39_RS22145;product=flagellar hook-basal body complex protein FliE;protein_id=WP_023568996.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 17281 18927 . + . ID=gene-AD39_RS22140;Name=fliF;gbkey=Gene;gene=fliF;gene_biotype=protein_coding;locus_tag=AD39_RS22140;old_locus_tag=AD39_0239 NZ_JJLH01000006.1 Protein Homology CDS 17281 18927 . + 0 ID=cds-WP_032286030.1;Parent=gene-AD39_RS22140;Dbxref=GenBank:WP_032286030.1;Name=WP_032286030.1;Ontology_term=GO:0001539,GO:0005198,GO:0009431;gbkey=CDS;gene=fliF;go_component=bacterial-type flagellum basal body%2C MS ring|0009431||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001643010.1;locus_tag=AD39_RS22140;product=flagellar basal-body MS-ring/collar protein FliF;protein_id=WP_032286030.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 18905 19915 . + . ID=gene-AD39_RS22135;Name=AD39_RS22135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22135;old_locus_tag=AD39_0240 NZ_JJLH01000006.1 Protein Homology CDS 18905 19915 . + 0 ID=cds-WP_001293171.1;Parent=gene-AD39_RS22135;Dbxref=GenBank:WP_001293171.1;Name=WP_001293171.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001293121.1;locus_tag=AD39_RS22135;product=flagellar motor switch protein FliG;protein_id=WP_001293171.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 19918 20628 . + . ID=gene-AD39_RS22130;Name=fliH;gbkey=Gene;gene=fliH;gene_biotype=protein_coding;locus_tag=AD39_RS22130;old_locus_tag=AD39_0241 NZ_JJLH01000006.1 Protein Homology CDS 19918 20628 . + 0 ID=cds-WP_000151527.1;Parent=gene-AD39_RS22130;Dbxref=GenBank:WP_000151527.1;Name=WP_000151527.1;gbkey=CDS;gene=fliH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001521882.1;locus_tag=AD39_RS22130;product=flagellar assembly protein FliH;protein_id=WP_000151527.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 20621 21958 . + . ID=gene-AD39_RS22125;Name=fliI;gbkey=Gene;gene=fliI;gene_biotype=protein_coding;locus_tag=AD39_RS22125;old_locus_tag=AD39_0242 NZ_JJLH01000006.1 Protein Homology CDS 20621 21958 . + 0 ID=cds-WP_001279404.1;Parent=gene-AD39_RS22125;Dbxref=GenBank:WP_001279404.1;Name=WP_001279404.1;Ontology_term=GO:0030254,GO:0005524,GO:0016887;gbkey=CDS;gene=fliI;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001279390.1;locus_tag=AD39_RS22125;product=flagellar protein export ATPase FliI;protein_id=WP_001279404.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 21961 22395 . + . ID=gene-AD39_RS22120;Name=fliJ;gbkey=Gene;gene=fliJ;gene_biotype=protein_coding;locus_tag=AD39_RS22120;old_locus_tag=AD39_0243 NZ_JJLH01000006.1 Protein Homology CDS 21961 22395 . + 0 ID=cds-WP_032283012.1;Parent=gene-AD39_RS22120;Dbxref=GenBank:WP_032283012.1;Name=WP_032283012.1;Ontology_term=GO:0071973,GO:0003774,GO:0009288;gbkey=CDS;gene=fliJ;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001248915.1;locus_tag=AD39_RS22120;product=flagellar export protein FliJ;protein_id=WP_032283012.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 22398 22793 . + . ID=gene-AD39_RS22115;Name=AD39_RS22115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22115;old_locus_tag=AD39_0244 NZ_JJLH01000006.1 Protein Homology CDS 22398 22793 . + 0 ID=cds-WP_000859525.1;Parent=gene-AD39_RS22115;Dbxref=GenBank:WP_000859525.1;Name=WP_000859525.1;Ontology_term=GO:0009058,GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001637450.1;locus_tag=AD39_RS22115;product=adenylyltransferase/cytidyltransferase family protein;protein_id=WP_000859525.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 22911 25355 . - . ID=gene-AD39_RS22110;Name=AD39_RS22110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22110;old_locus_tag=AD39_0245 NZ_JJLH01000006.1 Protein Homology CDS 22911 25355 . - 0 ID=cds-WP_032286031.1;Parent=gene-AD39_RS22110;Dbxref=GenBank:WP_032286031.1;Name=WP_032286031.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001412594.1;locus_tag=AD39_RS22110;product=glycosyltransferase;protein_id=WP_032286031.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 25534 26463 . - . ID=gene-AD39_RS22105;Name=AD39_RS22105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22105;old_locus_tag=AD39_0246 NZ_JJLH01000006.1 Protein Homology CDS 25534 26463 . - 0 ID=cds-WP_001402044.1;Parent=gene-AD39_RS22105;Dbxref=GenBank:WP_001402044.1;Name=WP_001402044.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000008086.1;locus_tag=AD39_RS22105;product=hypothetical protein;protein_id=WP_001402044.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 26590 27018 . - . ID=gene-AD39_RS22100;Name=flgN;gbkey=Gene;gene=flgN;gene_biotype=protein_coding;locus_tag=AD39_RS22100;old_locus_tag=AD39_0247 NZ_JJLH01000006.1 Protein Homology CDS 26590 27018 . - 0 ID=cds-WP_024170768.1;Parent=gene-AD39_RS22100;Dbxref=GenBank:WP_024170768.1;Name=WP_024170768.1;Ontology_term=GO:0044780,GO:0005515;gbkey=CDS;gene=flgN;go_function=protein binding|0005515||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001329715.1;locus_tag=AD39_RS22100;product=flagellar protein FlgN;protein_id=WP_024170768.1;transl_table=11 NZ_JJLH01000006.1 RefSeq gene 27031 27291 . - . ID=gene-AD39_RS22095;Name=flgM;gbkey=Gene;gene=flgM;gene_biotype=protein_coding;locus_tag=AD39_RS22095;old_locus_tag=AD39_0248 NZ_JJLH01000006.1 Protein Homology CDS 27031 27291 . - 0 ID=cds-WP_032287478.1;Parent=gene-AD39_RS22095;Dbxref=GenBank:WP_032287478.1;Name=WP_032287478.1;Ontology_term=GO:0045892;gbkey=CDS;gene=flgM;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001489568.1;locus_tag=AD39_RS22095;product=flagellar biosynthesis anti-sigma factor FlgM;protein_id=WP_032287478.1;transl_table=11 ##sequence-region NZ_JJLH01000007.1 1 407331 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000007.1 RefSeq region 1 407331 . + . ID=NZ_JJLH01000007.1:1..407331;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000007.1 RefSeq gene 20 949 . - . ID=gene-AD39_RS22090;Name=AD39_RS22090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22090;old_locus_tag=AD39_0249 NZ_JJLH01000007.1 Protein Homology CDS 20 949 . - 0 ID=cds-WP_001402044.1-2;Parent=gene-AD39_RS22090;Dbxref=GenBank:WP_001402044.1;Name=WP_001402044.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000008086.1;locus_tag=AD39_RS22090;product=hypothetical protein;protein_id=WP_001402044.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 1076 1504 . - . ID=gene-AD39_RS22085;Name=flgN;gbkey=Gene;gene=flgN;gene_biotype=protein_coding;locus_tag=AD39_RS22085;old_locus_tag=AD39_0250 NZ_JJLH01000007.1 Protein Homology CDS 1076 1504 . - 0 ID=cds-WP_024170768.1-2;Parent=gene-AD39_RS22085;Dbxref=GenBank:WP_024170768.1;Name=WP_024170768.1;Ontology_term=GO:0044780,GO:0005515;gbkey=CDS;gene=flgN;go_function=protein binding|0005515||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001329715.1;locus_tag=AD39_RS22085;product=flagellar protein FlgN;protein_id=WP_024170768.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 1517 1795 . - . ID=gene-AD39_RS22080;Name=flgM;gbkey=Gene;gene=flgM;gene_biotype=protein_coding;locus_tag=AD39_RS22080;old_locus_tag=AD39_0251 NZ_JJLH01000007.1 Protein Homology CDS 1517 1795 . - 0 ID=cds-WP_000705394.1;Parent=gene-AD39_RS22080;Dbxref=GenBank:WP_000705394.1;Name=WP_000705394.1;Ontology_term=GO:0045892;gbkey=CDS;gene=flgM;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000705216.1;locus_tag=AD39_RS22080;product=flagellar biosynthesis anti-sigma factor FlgM;protein_id=WP_000705394.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 1876 2613 . - . ID=gene-AD39_RS22075;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=AD39_RS22075;old_locus_tag=AD39_0252 NZ_JJLH01000007.1 Protein Homology CDS 1876 2613 . - 0 ID=cds-WP_000009751.1;Parent=gene-AD39_RS22075;Dbxref=GenBank:WP_000009751.1;Name=WP_000009751.1;Ontology_term=GO:0001539,GO:0005198,GO:0009428;gbkey=CDS;gene=flgA;go_component=bacterial-type flagellum basal body%2C distal rod%2C P ring|0009428||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016233868.1;locus_tag=AD39_RS22075;product=flagellar basal body P-ring formation chaperone FlgA;protein_id=WP_000009751.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 2695 3030 . + . ID=gene-AD39_RS22070;Name=AD39_RS22070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22070;old_locus_tag=AD39_0253 NZ_JJLH01000007.1 Protein Homology CDS 2695 3030 . + 0 ID=cds-WP_000512950.1;Parent=gene-AD39_RS22070;Dbxref=GenBank:WP_000512950.1;Name=WP_000512950.1;Ontology_term=GO:0071973;gbkey=CDS;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003838822.1;locus_tag=AD39_RS22070;product=flagellar basal body protein;protein_id=WP_000512950.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 3033 3464 . + . ID=gene-AD39_RS22065;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=protein_coding;locus_tag=AD39_RS22065;old_locus_tag=AD39_0254 NZ_JJLH01000007.1 Protein Homology CDS 3033 3464 . + 0 ID=cds-WP_000010950.1;Parent=gene-AD39_RS22065;Dbxref=GenBank:WP_000010950.1;Name=WP_000010950.1;Ontology_term=GO:0071973,GO:0030694;gbkey=CDS;gene=flgC;go_component=bacterial-type flagellum basal body%2C rod|0030694||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000010944.1;locus_tag=AD39_RS22065;product=flagellar basal body rod protein FlgC;protein_id=WP_000010950.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 3464 4177 . + . ID=gene-AD39_RS22060;Name=AD39_RS22060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22060;old_locus_tag=AD39_0255 NZ_JJLH01000007.1 Protein Homology CDS 3464 4177 . + 0 ID=cds-WP_001093673.1;Parent=gene-AD39_RS22060;Dbxref=GenBank:WP_001093673.1;Name=WP_001093673.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001508388.1;locus_tag=AD39_RS22060;product=flagellar hook capping FlgD N-terminal domain-containing protein;protein_id=WP_001093673.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 4262 5464 . + . ID=gene-AD39_RS22055;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=AD39_RS22055;old_locus_tag=AD39_0256 NZ_JJLH01000007.1 Protein Homology CDS 4262 5464 . + 0 ID=cds-WP_000119528.1;Parent=gene-AD39_RS22055;Dbxref=GenBank:WP_000119528.1;Name=WP_000119528.1;gbkey=CDS;gene=flgE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904671.1;locus_tag=AD39_RS22055;product=flagellar hook protein FlgE;protein_id=WP_000119528.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 5464 6201 . + . ID=gene-AD39_RS22050;Name=AD39_RS22050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22050;old_locus_tag=AD39_0257 NZ_JJLH01000007.1 Protein Homology CDS 5464 6201 . + 0 ID=cds-WP_000375468.1;Parent=gene-AD39_RS22050;Dbxref=GenBank:WP_000375468.1;Name=WP_000375468.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000375458.1;locus_tag=AD39_RS22050;product=flagellar basal body rod protein FlgF;protein_id=WP_000375468.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 6280 7065 . + . ID=gene-AD39_RS22045;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=AD39_RS22045;old_locus_tag=AD39_0258 NZ_JJLH01000007.1 Protein Homology CDS 6280 7065 . + 0 ID=cds-WP_000990540.1;Parent=gene-AD39_RS22045;Dbxref=GenBank:WP_000990540.1;Name=WP_000990540.1;Ontology_term=GO:0071973,GO:0009426;gbkey=CDS;gene=flgG;go_component=bacterial-type flagellum basal body%2C distal rod|0009426||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003838810.1;locus_tag=AD39_RS22045;product=flagellar basal-body rod protein FlgG;protein_id=WP_000990540.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 7148 7813 . + . ID=gene-AD39_RS22040;Name=flgH;gbkey=Gene;gene=flgH;gene_biotype=protein_coding;locus_tag=AD39_RS22040;old_locus_tag=AD39_0260 NZ_JJLH01000007.1 Protein Homology CDS 7148 7813 . + 0 ID=cds-WP_000800868.1;Parent=gene-AD39_RS22040;Dbxref=GenBank:WP_000800868.1;Name=WP_000800868.1;Ontology_term=GO:0071973,GO:0003774,GO:0009427;gbkey=CDS;gene=flgH;go_component=bacterial-type flagellum basal body%2C distal rod%2C L ring|0009427||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002211429.1;locus_tag=AD39_RS22040;product=flagellar basal body L-ring protein FlgH;protein_id=WP_000800868.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 7828 8928 . + . ID=gene-AD39_RS22035;Name=AD39_RS22035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22035;old_locus_tag=AD39_0261 NZ_JJLH01000007.1 Protein Homology CDS 7828 8928 . + 0 ID=cds-WP_023569001.1;Parent=gene-AD39_RS22035;Dbxref=GenBank:WP_023569001.1;Name=WP_023569001.1;Ontology_term=GO:0071973,GO:0005198,GO:0009428,GO:0030288;gbkey=CDS;go_component=bacterial-type flagellum basal body%2C distal rod%2C P ring|0009428||IEA,outer membrane-bounded periplasmic space|0030288||IEA;go_function=structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001181884.1;locus_tag=AD39_RS22035;product=flagellar basal body P-ring protein FlgI;protein_id=WP_023569001.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 8928 9227 . + . ID=gene-AD39_RS22030;Name=AD39_RS22030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22030;old_locus_tag=AD39_0262 NZ_JJLH01000007.1 Protein Homology CDS 8928 9227 . + 0 ID=cds-WP_000772687.1;Parent=gene-AD39_RS22030;Dbxref=GenBank:WP_000772687.1;Name=WP_000772687.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000867283.1;locus_tag=AD39_RS22030;product=rod-binding protein;protein_id=WP_000772687.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 9416 10792 . + . ID=gene-AD39_RS22025;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=protein_coding;locus_tag=AD39_RS22025;old_locus_tag=AD39_0263 NZ_JJLH01000007.1 Protein Homology CDS 9416 10792 . + 0 ID=cds-WP_032283013.1;Parent=gene-AD39_RS22025;Dbxref=GenBank:WP_032283013.1;Name=WP_032283013.1;Ontology_term=GO:0044780,GO:0005198,GO:0009424;gbkey=CDS;gene=flgK;go_component=bacterial-type flagellum hook|0009424||IEA;go_function=structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000367241.1;locus_tag=AD39_RS22025;product=flagellar hook-associated protein FlgK;protein_id=WP_032283013.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 10807 11736 . + . ID=gene-AD39_RS22020;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=AD39_RS22020;old_locus_tag=AD39_0264 NZ_JJLH01000007.1 Protein Homology CDS 10807 11736 . + 0 ID=cds-WP_001266804.1;Parent=gene-AD39_RS22020;Dbxref=GenBank:WP_001266804.1;Name=WP_001266804.1;Ontology_term=GO:0001539,GO:0005198,GO:0009424;gbkey=CDS;gene=flgL;go_component=bacterial-type flagellum hook|0009424||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020219239.1;locus_tag=AD39_RS22020;product=flagellar hook-associated protein FlgL;protein_id=WP_001266804.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 11753 12730 . + . ID=gene-AD39_RS22015;Name=AD39_RS22015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22015;old_locus_tag=AD39_0265 NZ_JJLH01000007.1 Protein Homology CDS 11753 12730 . + 0 ID=cds-WP_032287479.1;Parent=gene-AD39_RS22015;Dbxref=GenBank:WP_032287479.1;Name=WP_032287479.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001195949.1;locus_tag=AD39_RS22015;product=hypothetical protein;protein_id=WP_032287479.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 12785 13627 . - . ID=gene-AD39_RS22010;Name=AD39_RS22010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS22010;old_locus_tag=AD39_0266 NZ_JJLH01000007.1 Protein Homology CDS 12785 13627 . - 0 ID=cds-WP_001724439.1;Parent=gene-AD39_RS22010;Dbxref=GenBank:WP_001724439.1;Name=WP_001724439.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000022370.1;locus_tag=AD39_RS22010;product=transcriptional regulator;protein_id=WP_001724439.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 14113 15027 . + . ID=gene-AD39_RS22005;Name=lafA;gbkey=Gene;gene=lafA;gene_biotype=protein_coding;locus_tag=AD39_RS22005;old_locus_tag=AD39_0267 NZ_JJLH01000007.1 Protein Homology CDS 14113 15027 . + 0 ID=cds-WP_000949083.1;Parent=gene-AD39_RS22005;Dbxref=GenBank:WP_000949083.1;Name=WP_000949083.1;gbkey=CDS;gene=lafA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001570969.1;locus_tag=AD39_RS22005;product=lateral flagellin LafA;protein_id=WP_000949083.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 15234 16550 . + . ID=gene-AD39_RS22000;Name=fliD;gbkey=Gene;gene=fliD;gene_biotype=protein_coding;locus_tag=AD39_RS22000;old_locus_tag=AD39_0268 NZ_JJLH01000007.1 Protein Homology CDS 15234 16550 . + 0 ID=cds-WP_000609676.1;Parent=gene-AD39_RS22000;Dbxref=GenBank:WP_000609676.1;Name=WP_000609676.1;Ontology_term=GO:0007155,GO:0009288;gbkey=CDS;gene=fliD;go_component=bacterial-type flagellum|0009288||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000609688.1;locus_tag=AD39_RS22000;product=flagellar filament capping protein FliD;protein_id=WP_000609676.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 16573 16965 . + . ID=gene-AD39_RS21995;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;locus_tag=AD39_RS21995;old_locus_tag=AD39_0269 NZ_JJLH01000007.1 Protein Homology CDS 16573 16965 . + 0 ID=cds-WP_000285319.1;Parent=gene-AD39_RS21995;Dbxref=GenBank:WP_000285319.1;Name=WP_000285319.1;Ontology_term=GO:0044780;gbkey=CDS;gene=fliS;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000285320.1;locus_tag=AD39_RS21995;product=flagellar export chaperone FliS;protein_id=WP_000285319.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 16970 17281 . + . ID=gene-AD39_RS21990;Name=AD39_RS21990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS21990;old_locus_tag=AD39_0270 NZ_JJLH01000007.1 Protein Homology CDS 16970 17281 . + 0 ID=cds-WP_032283014.1;Parent=gene-AD39_RS21990;Dbxref=GenBank:WP_032283014.1;Name=WP_032283014.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000414995.1;locus_tag=AD39_RS21990;product=hypothetical protein;protein_id=WP_032283014.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 17278 18339 . + . ID=gene-AD39_RS21985;Name=AD39_RS21985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS21985;old_locus_tag=AD39_0271 NZ_JJLH01000007.1 Protein Homology CDS 17278 18339 . + 0 ID=cds-WP_001402047.1;Parent=gene-AD39_RS21985;Dbxref=GenBank:WP_001402047.1;Name=WP_001402047.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001067462.1;locus_tag=AD39_RS21985;product=flagellar hook-length control protein FliK;protein_id=WP_001402047.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 18347 18814 . + . ID=gene-AD39_RS21980;Name=AD39_RS21980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS21980;old_locus_tag=AD39_0272 NZ_JJLH01000007.1 Protein Homology CDS 18347 18814 . + 0 ID=cds-WP_000725257.1;Parent=gene-AD39_RS21980;Dbxref=GenBank:WP_000725257.1;Name=WP_000725257.1;Ontology_term=GO:0006935,GO:0071978,GO:0009425;gbkey=CDS;go_component=bacterial-type flagellum basal body|0009425||IEA;go_process=chemotaxis|0006935||IEA,bacterial-type flagellum-dependent swarming motility|0071978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001521900.1;locus_tag=AD39_RS21980;product=flagellar basal body-associated FliL family protein;protein_id=WP_000725257.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 18834 19550 . + . ID=gene-AD39_RS21975;Name=AD39_RS21975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS21975;old_locus_tag=AD39_0273 NZ_JJLH01000007.1 Protein Homology CDS 18834 19550 . + 0 ID=cds-WP_000938729.1;Parent=gene-AD39_RS21975;Dbxref=GenBank:WP_000938729.1;Name=WP_000938729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000938732.1;locus_tag=AD39_RS21975;product=FliA/WhiG family RNA polymerase sigma factor;protein_id=WP_000938729.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 19563 20426 . + . ID=gene-AD39_RS21970;Name=motA;gbkey=Gene;gene=motA;gene_biotype=protein_coding;locus_tag=AD39_RS21970;old_locus_tag=AD39_0274 NZ_JJLH01000007.1 Protein Homology CDS 19563 20426 . + 0 ID=cds-WP_001169518.1;Parent=gene-AD39_RS21970;Dbxref=GenBank:WP_001169518.1;Name=WP_001169518.1;gbkey=CDS;gene=motA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001169515.1;locus_tag=AD39_RS21970;product=flagellar motor stator protein MotA;protein_id=WP_001169518.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 20429 21352 . + . ID=gene-AD39_RS21965;Name=lafU;gbkey=Gene;gene=lafU;gene_biotype=protein_coding;locus_tag=AD39_RS21965;old_locus_tag=AD39_0275 NZ_JJLH01000007.1 Protein Homology CDS 20429 21352 . + 0 ID=cds-WP_032226559.1;Parent=gene-AD39_RS21965;Dbxref=GenBank:WP_032226559.1;Name=WP_032226559.1;gbkey=CDS;gene=lafU;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001521902.1;locus_tag=AD39_RS21965;product=putative lateral flagellar export/assembly protein LafU;protein_id=WP_032226559.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 21423 22478 . + . ID=gene-AD39_RS21960;Name=dinB;gbkey=Gene;gene=dinB;gene_biotype=protein_coding;locus_tag=AD39_RS21960;old_locus_tag=AD39_0276 NZ_JJLH01000007.1 Protein Homology CDS 21423 22478 . + 0 ID=cds-WP_001465152.1;Parent=gene-AD39_RS21960;Dbxref=GenBank:WP_001465152.1;Name=WP_001465152.1;Ontology_term=GO:0006281,GO:0003684,GO:0003887;gbkey=CDS;gene=dinB;go_function=damaged DNA binding|0003684||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308285.1;locus_tag=AD39_RS21960;product=DNA polymerase IV;protein_id=WP_001465152.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 22475 22927 . + . ID=gene-AD39_RS21955;Name=yafP;gbkey=Gene;gene=yafP;gene_biotype=protein_coding;locus_tag=AD39_RS21955;old_locus_tag=AD39_0277 NZ_JJLH01000007.1 Protein Homology CDS 22475 22927 . + 0 ID=cds-WP_001059855.1;Parent=gene-AD39_RS21955;Dbxref=GenBank:WP_001059855.1;Name=WP_001059855.1;gbkey=CDS;gene=yafP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706234.1;locus_tag=AD39_RS21955;product=GNAT family N-acetyltransferase;protein_id=WP_001059855.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 23173 24312 . + . ID=gene-AD39_RS21950;Name=AD39_RS21950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS21950;old_locus_tag=AD39_0278 NZ_JJLH01000007.1 Protein Homology CDS 23173 24312 . + 0 ID=cds-WP_001398672.1;Parent=gene-AD39_RS21950;Dbxref=GenBank:WP_001398672.1;Name=WP_001398672.1;Ontology_term=GO:0006396,GO:0008452;gbkey=CDS;go_function=RNA ligase activity|0008452||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000521550.1;locus_tag=AD39_RS21950;product=RNA ligase RtcB family protein;protein_id=WP_001398672.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 24309 24923 . + . ID=gene-AD39_RS21945;Name=prfH;gbkey=Gene;gene=prfH;gene_biotype=protein_coding;locus_tag=AD39_RS21945;old_locus_tag=AD39_0279 NZ_JJLH01000007.1 Protein Homology CDS 24309 24923 . + 0 ID=cds-WP_000602112.1;Parent=gene-AD39_RS21945;Dbxref=GenBank:WP_000602112.1;Name=WP_000602112.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=prfH;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000602105.1;locus_tag=AD39_RS21945;product=peptide chain release factor H;protein_id=WP_000602112.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 24980 26437 . - . ID=gene-AD39_RS21940;Name=pepD;gbkey=Gene;gene=pepD;gene_biotype=protein_coding;locus_tag=AD39_RS21940;old_locus_tag=AD39_0280 NZ_JJLH01000007.1 Protein Homology CDS 24980 26437 . - 0 ID=cds-WP_001293016.1;Parent=gene-AD39_RS21940;Dbxref=GenBank:WP_001293016.1;Name=WP_001293016.1;Ontology_term=GO:0006508,GO:0016787;gbkey=CDS;gene=pepD;go_function=hydrolase activity|0016787||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308291.1;locus_tag=AD39_RS21940;product=cytosol nonspecific dipeptidase;protein_id=WP_001293016.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 26698 27156 . + . ID=gene-AD39_RS21935;Name=gpt;gbkey=Gene;gene=gpt;gene_biotype=protein_coding;locus_tag=AD39_RS21935;old_locus_tag=AD39_0281 NZ_JJLH01000007.1 Protein Homology CDS 26698 27156 . + 0 ID=cds-WP_001291990.1;Parent=gene-AD39_RS21935;Dbxref=GenBank:WP_001291990.1;Name=WP_001291990.1;Ontology_term=GO:0009116,GO:0000310;gbkey=CDS;gene=gpt;go_function=xanthine phosphoribosyltransferase activity|0000310||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308292.1;locus_tag=AD39_RS21935;product=xanthine phosphoribosyltransferase;protein_id=WP_001291990.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 27248 28492 . + . ID=gene-AD39_RS21930;Name=frsA;gbkey=Gene;gene=frsA;gene_biotype=protein_coding;locus_tag=AD39_RS21930;old_locus_tag=AD39_0282 NZ_JJLH01000007.1 Protein Homology CDS 27248 28492 . + 0 ID=cds-WP_000189543.1;Parent=gene-AD39_RS21930;Dbxref=GenBank:WP_000189543.1;Name=WP_000189543.1;Ontology_term=GO:0016788;gbkey=CDS;gene=frsA;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706239.1;locus_tag=AD39_RS21930;product=esterase FrsA;protein_id=WP_000189543.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 28550 28951 . + . ID=gene-AD39_RS21925;Name=crl;gbkey=Gene;gene=crl;gene_biotype=protein_coding;locus_tag=AD39_RS21925;old_locus_tag=AD39_0283 NZ_JJLH01000007.1 Protein Homology CDS 28550 28951 . + 0 ID=cds-WP_000174677.1;Parent=gene-AD39_RS21925;Dbxref=GenBank:WP_000174677.1;Name=WP_000174677.1;Ontology_term=GO:0045893;gbkey=CDS;gene=crl;go_process=positive regulation of DNA-templated transcription|0045893||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308294.1;locus_tag=AD39_RS21925;product=sigma factor-binding protein Crl;protein_id=WP_000174677.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 28990 30045 . - . ID=gene-AD39_RS21920;Name=phoE;gbkey=Gene;gene=phoE;gene_biotype=protein_coding;locus_tag=AD39_RS21920;old_locus_tag=AD39_0284 NZ_JJLH01000007.1 Protein Homology CDS 28990 30045 . - 0 ID=cds-WP_000749865.1;Parent=gene-AD39_RS21920;Dbxref=GenBank:WP_000749865.1;Name=WP_000749865.1;Ontology_term=GO:0034220,GO:0015288,GO:0016020;gbkey=CDS;gene=phoE;go_component=membrane|0016020||IEA;go_function=porin activity|0015288||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414776.1;locus_tag=AD39_RS21920;product=phosphoporin PhoE;protein_id=WP_000749865.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 30333 31436 . + . ID=gene-AD39_RS21915;Name=proB;gbkey=Gene;gene=proB;gene_biotype=protein_coding;locus_tag=AD39_RS21915;old_locus_tag=AD39_0286 NZ_JJLH01000007.1 Protein Homology CDS 30333 31436 . + 0 ID=cds-WP_001285288.1;Parent=gene-AD39_RS21915;Dbxref=GenBank:WP_001285288.1;Name=WP_001285288.1;Ontology_term=GO:0006561,GO:0004349,GO:0005737;gbkey=CDS;gene=proB;go_component=cytoplasm|0005737||IEA;go_function=glutamate 5-kinase activity|0004349||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308296.1;locus_tag=AD39_RS21915;product=glutamate 5-kinase;protein_id=WP_001285288.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 31448 32701 . + . ID=gene-AD39_RS21910;Name=proA;gbkey=Gene;gene=proA;gene_biotype=protein_coding;locus_tag=AD39_RS21910;old_locus_tag=AD39_0287 NZ_JJLH01000007.1 Protein Homology CDS 31448 32701 . + 0 ID=cds-WP_000893255.1;Parent=gene-AD39_RS21910;Dbxref=GenBank:WP_000893255.1;Name=WP_000893255.1;Ontology_term=GO:0006561,GO:0004350;gbkey=CDS;gene=proA;go_function=glutamate-5-semialdehyde dehydrogenase activity|0004350||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414778.1;locus_tag=AD39_RS21910;product=glutamate-5-semialdehyde dehydrogenase;protein_id=WP_000893255.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 32816 32891 . + . ID=gene-AD39_RS21905;Name=AD39_RS21905;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS21905;old_locus_tag=AD39_0288 NZ_JJLH01000007.1 tRNAscan-SE tRNA 32816 32891 . + . ID=rna-AD39_RS21905;Parent=gene-AD39_RS21905;anticodon=(pos:32849..32851);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS21905;product=tRNA-Thr NZ_JJLH01000007.1 tRNAscan-SE exon 32816 32891 . + . ID=exon-AD39_RS21905-1;Parent=rna-AD39_RS21905;anticodon=(pos:32849..32851);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS21905;product=tRNA-Thr NZ_JJLH01000007.1 RefSeq pseudogene 33018 33356 . - . ID=gene-AD39_RS21900;Name=AD39_RS21900;end_range=33356,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS21900;old_locus_tag=AD39_0289;partial=true;pseudo=true NZ_JJLH01000007.1 Protein Homology CDS 33018 33356 . - 0 ID=cds-AD39_RS21900;Parent=gene-AD39_RS21900;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=33356,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014831000.1;locus_tag=AD39_RS21900;partial=true;product=LysR substrate-binding domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 33407 34363 . - . ID=gene-AD39_RS21895;Name=paoD;gbkey=Gene;gene=paoD;gene_biotype=protein_coding;locus_tag=AD39_RS21895;old_locus_tag=AD39_0290 NZ_JJLH01000007.1 Protein Homology CDS 33407 34363 . - 0 ID=cds-WP_000121333.1;Parent=gene-AD39_RS21895;Dbxref=GenBank:WP_000121333.1;Name=WP_000121333.1;gbkey=CDS;gene=paoD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414817.1;locus_tag=AD39_RS21895;product=molybdenum cofactor insertion chaperone PaoD;protein_id=WP_000121333.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 34373 36571 . - . ID=gene-AD39_RS21890;Name=paoC;gbkey=Gene;gene=paoC;gene_biotype=protein_coding;locus_tag=AD39_RS21890;old_locus_tag=AD39_0291 NZ_JJLH01000007.1 Protein Homology CDS 34373 36571 . - 0 ID=cds-WP_001389339.1;Parent=gene-AD39_RS21890;Dbxref=GenBank:WP_001389339.1;Name=WP_001389339.1;gbkey=CDS;gene=paoC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414818.1;locus_tag=AD39_RS21890;product=aldehyde oxidoreductase molybdenum-binding subunit PaoC;protein_id=WP_001389339.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 36568 37524 . - . ID=gene-AD39_RS21885;Name=paoB;gbkey=Gene;gene=paoB;gene_biotype=protein_coding;locus_tag=AD39_RS21885;old_locus_tag=AD39_0292 NZ_JJLH01000007.1 Protein Homology CDS 36568 37524 . - 0 ID=cds-WP_000643333.1;Parent=gene-AD39_RS21885;Dbxref=GenBank:WP_000643333.1;Name=WP_000643333.1;gbkey=CDS;gene=paoB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414819.1;locus_tag=AD39_RS21885;product=aldehyde oxidoreductase FAD-binding subunit PaoB;protein_id=WP_000643333.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 37521 38210 . - . ID=gene-AD39_RS21880;Name=paoA;gbkey=Gene;gene=paoA;gene_biotype=protein_coding;locus_tag=AD39_RS21880;old_locus_tag=AD39_0293 NZ_JJLH01000007.1 Protein Homology CDS 37521 38210 . - 0 ID=cds-WP_029488689.1;Parent=gene-AD39_RS21880;Dbxref=GenBank:WP_029488689.1;Name=WP_029488689.1;Ontology_term=GO:0046872,GO:0047770,GO:0051536;gbkey=CDS;gene=paoA;go_function=metal ion binding|0046872||IEA,carboxylate reductase activity|0047770||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414820.1;locus_tag=AD39_RS21880;product=aldehyde dehydrogenase iron-sulfur subunit PaoA;protein_id=WP_029488689.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 38628 39242 . + . ID=gene-AD39_RS21875;Name=yagU;gbkey=Gene;gene=yagU;gene_biotype=protein_coding;locus_tag=AD39_RS21875;old_locus_tag=AD39_0295 NZ_JJLH01000007.1 Protein Homology CDS 38628 39242 . + 0 ID=cds-WP_001019920.1;Parent=gene-AD39_RS21875;Dbxref=GenBank:WP_001019920.1;Name=WP_001019920.1;gbkey=CDS;gene=yagU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308344.1;locus_tag=AD39_RS21875;product=YagU family protein;protein_id=WP_001019920.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 39490 39819 . - . ID=gene-AD39_RS0123300;Name=ykgJ;gbkey=Gene;gene=ykgJ;gene_biotype=protein_coding;locus_tag=AD39_RS0123300 NZ_JJLH01000007.1 Protein Homology CDS 39490 39819 . - 0 ID=cds-WP_001303809.1;Parent=gene-AD39_RS0123300;Dbxref=GenBank:WP_001303809.1;Name=WP_001303809.1;Ontology_term=GO:0046872,GO:0051536;gbkey=CDS;gene=ykgJ;go_function=metal ion binding|0046872||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414822.1;locus_tag=AD39_RS0123300;product=YkgJ family cysteine cluster protein;protein_id=WP_001303809.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 40132 40842 . - . ID=gene-AD39_RS21870;Name=ecpE;gbkey=Gene;gene=ecpE;gene_biotype=protein_coding;locus_tag=AD39_RS21870;old_locus_tag=AD39_0297 NZ_JJLH01000007.1 Protein Homology CDS 40132 40842 . - 0 ID=cds-WP_001296887.1;Parent=gene-AD39_RS21870;Dbxref=GenBank:WP_001296887.1;Name=WP_001296887.1;gbkey=CDS;gene=ecpE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414823.2;locus_tag=AD39_RS21870;product=fimbrial chaperone EcpE;protein_id=WP_001296887.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 40811 42454 . - . ID=gene-AD39_RS21865;Name=ecpD;gbkey=Gene;gene=ecpD;gene_biotype=protein_coding;locus_tag=AD39_RS21865;old_locus_tag=AD39_0298 NZ_JJLH01000007.1 Protein Homology CDS 40811 42454 . - 0 ID=cds-WP_001315269.1;Parent=gene-AD39_RS21865;Dbxref=GenBank:WP_001315269.1;Name=WP_001315269.1;gbkey=CDS;gene=ecpD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414824.1;locus_tag=AD39_RS21865;product=fimbrial adhesin EcpD;protein_id=WP_001315269.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 42444 44969 . - . ID=gene-AD39_RS21860;Name=ecpC;gbkey=Gene;gene=ecpC;gene_biotype=protein_coding;gene_synonym=yagX;locus_tag=AD39_RS21860;old_locus_tag=AD39_0299 NZ_JJLH01000007.1 Protein Homology CDS 42444 44969 . - 0 ID=cds-WP_001398685.1;Parent=gene-AD39_RS21860;Dbxref=GenBank:WP_001398685.1;Name=WP_001398685.1;gbkey=CDS;gene=ecpC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414825.1;locus_tag=AD39_RS21860;product=fimbrial usher EcpC;protein_id=WP_001398685.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 44995 45663 . - . ID=gene-AD39_RS21855;Name=ecpB;gbkey=Gene;gene=ecpB;gene_biotype=protein_coding;gene_synonym=yagY;locus_tag=AD39_RS21855;old_locus_tag=AD39_0300 NZ_JJLH01000007.1 Protein Homology CDS 44995 45663 . - 0 ID=cds-WP_000716398.1;Parent=gene-AD39_RS21855;Dbxref=GenBank:WP_000716398.1;Name=WP_000716398.1;gbkey=CDS;gene=ecpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414826.1;locus_tag=AD39_RS21855;product=fimbrial chaperone EcpB;protein_id=WP_000716398.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 45721 46308 . - . ID=gene-AD39_RS21850;Name=ecpA;gbkey=Gene;gene=ecpA;gene_biotype=protein_coding;gene_synonym=matB;locus_tag=AD39_RS21850;old_locus_tag=AD39_0301 NZ_JJLH01000007.1 Protein Homology CDS 45721 46308 . - 0 ID=cds-WP_000730974.1;Parent=gene-AD39_RS21850;Dbxref=GenBank:WP_000730974.1;Name=WP_000730974.1;gbkey=CDS;gene=ecpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308350.1;locus_tag=AD39_RS21850;product=common pilus major fimbrillin subunit EcpA;protein_id=WP_000730974.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 46383 46925 . - . ID=gene-AD39_RS21845;Name=ecpR;gbkey=Gene;gene=ecpR;gene_biotype=protein_coding;gene_synonym=matA;locus_tag=AD39_RS21845;old_locus_tag=AD39_0302 NZ_JJLH01000007.1 Protein Homology CDS 46383 46925 . - 0 ID=cds-WP_001296902.1;Parent=gene-AD39_RS21845;Dbxref=GenBank:WP_001296902.1;Name=WP_001296902.1;Ontology_term=GO:0006355,GO:1902021,GO:0003677;gbkey=CDS;gene=ecpR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,regulation of bacterial-type flagellum-dependent cell motility|1902021||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308351.2;locus_tag=AD39_RS21845;product=ECP biosynthesis operon DNA-binding transcriptional regulator EcpR;protein_id=WP_001296902.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 47748 47975 . + . ID=gene-AD39_RS0123305;Name=ykgL;gbkey=Gene;gene=ykgL;gene_biotype=protein_coding;locus_tag=AD39_RS0123305 NZ_JJLH01000007.1 Protein Homology CDS 47748 47975 . + 0 ID=cds-WP_001147277.1;Parent=gene-AD39_RS0123305;Dbxref=GenBank:WP_001147277.1;Name=WP_001147277.1;gbkey=CDS;gene=ykgL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414829.1;locus_tag=AD39_RS0123305;product=protein YkgL;protein_id=WP_001147277.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 48010 48150 . - . ID=gene-AD39_RS21840;Name=ykgO;gbkey=Gene;gene=ykgO;gene_biotype=protein_coding;locus_tag=AD39_RS21840;old_locus_tag=AD39_0303 NZ_JJLH01000007.1 Protein Homology CDS 48010 48150 . - 0 ID=cds-WP_000866436.1;Parent=gene-AD39_RS21840;Dbxref=GenBank:WP_000866436.1;Name=WP_000866436.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=ykgO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588437.1;locus_tag=AD39_RS21840;product=type B 50S ribosomal protein L36;protein_id=WP_000866436.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 48150 48413 . - . ID=gene-AD39_RS0123310;Name=ykgM;gbkey=Gene;gene=ykgM;gene_biotype=protein_coding;locus_tag=AD39_RS0123310 NZ_JJLH01000007.1 Protein Homology CDS 48150 48413 . - 0 ID=cds-WP_000803999.1;Parent=gene-AD39_RS0123310;Dbxref=GenBank:WP_000803999.1;Name=WP_000803999.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=ykgM;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414830.1;locus_tag=AD39_RS0123310;product=type B 50S ribosomal protein L31;protein_id=WP_000803999.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 48776 48877 . - . ID=gene-AD39_RS30020;Name=ykgR;gbkey=Gene;gene=ykgR;gene_biotype=protein_coding;locus_tag=AD39_RS30020 NZ_JJLH01000007.1 Protein Homology CDS 48776 48877 . - 0 ID=cds-WP_000662258.1;Parent=gene-AD39_RS30020;Dbxref=GenBank:WP_000662258.1;Name=WP_000662258.1;gbkey=CDS;gene=ykgR;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791238.1;locus_tag=AD39_RS30020;product=small membrane protein YkgR;protein_id=WP_000662258.1;transl_table=11 NZ_JJLH01000007.1 RefSeq pseudogene 49351 49440 . - . ID=gene-AD39_RS29610;Name=AD39_RS29610;end_range=49440,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29610;partial=true;pseudo=true NZ_JJLH01000007.1 Protein Homology CDS 49351 49440 . - 0 ID=cds-AD39_RS29610;Parent=gene-AD39_RS29610;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=49440,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308358.1;locus_tag=AD39_RS29610;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 49993 54249 . + . ID=gene-AD39_RS21835;Name=fdeC;gbkey=Gene;gene=fdeC;gene_biotype=protein_coding;locus_tag=AD39_RS21835;old_locus_tag=AD39_0305 NZ_JJLH01000007.1 Protein Homology CDS 49993 54249 . + 0 ID=cds-WP_032287481.1;Parent=gene-AD39_RS21835;Dbxref=GenBank:WP_032287481.1;Name=WP_032287481.1;gbkey=CDS;gene=fdeC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001635811.1;locus_tag=AD39_RS21835;product=inverse autotransporter adhesin FdeC;protein_id=WP_032287481.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 54389 55240 . - . ID=gene-AD39_RS21830;Name=AD39_RS21830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS21830;old_locus_tag=AD39_0307 NZ_JJLH01000007.1 Protein Homology CDS 54389 55240 . - 0 ID=cds-WP_000621009.1;Parent=gene-AD39_RS21830;Dbxref=GenBank:WP_000621009.1;Name=WP_000621009.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308364.2;locus_tag=AD39_RS21830;product=helix-turn-helix domain-containing protein;protein_id=WP_000621009.1;transl_table=11 NZ_JJLH01000007.1 RefSeq pseudogene 55543 55671 . + . ID=gene-AD39_RS28830;Name=AD39_RS28830;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28830;partial=true;pseudo=true;start_range=.,55543 NZ_JJLH01000007.1 Protein Homology CDS 55543 55671 . + 0 ID=cds-AD39_RS28830;Parent=gene-AD39_RS28830;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308365.3;locus_tag=AD39_RS28830;partial=true;product=aldo/keto reductase;pseudo=true;start_range=.,55543;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 55831 56424 . - . ID=gene-AD39_RS21825;Name=rclC;gbkey=Gene;gene=rclC;gene_biotype=protein_coding;locus_tag=AD39_RS21825;old_locus_tag=AD39_0308 NZ_JJLH01000007.1 Protein Homology CDS 55831 56424 . - 0 ID=cds-WP_001306921.1;Parent=gene-AD39_RS21825;Dbxref=GenBank:WP_001306921.1;Name=WP_001306921.1;gbkey=CDS;gene=rclC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414835.2;locus_tag=AD39_RS21825;product=reactive chlorine species resistance protein RclC;protein_id=WP_001306921.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 56436 56672 . - . ID=gene-AD39_RS21820;Name=rclB;gbkey=Gene;gene=rclB;gene_biotype=protein_coding;locus_tag=AD39_RS21820;old_locus_tag=AD39_0309 NZ_JJLH01000007.1 Protein Homology CDS 56436 56672 . - 0 ID=cds-WP_024166601.1;Parent=gene-AD39_RS21820;Dbxref=GenBank:WP_024166601.1;Name=WP_024166601.1;gbkey=CDS;gene=rclB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414837.2;locus_tag=AD39_RS21820;product=reactive chlorine resistance periplasmic protein RclB;protein_id=WP_024166601.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 56781 58106 . - . ID=gene-AD39_RS21815;Name=rclA;gbkey=Gene;gene=rclA;gene_biotype=protein_coding;locus_tag=AD39_RS21815;old_locus_tag=AD39_0310 NZ_JJLH01000007.1 Protein Homology CDS 56781 58106 . - 0 ID=cds-WP_001046306.1;Parent=gene-AD39_RS21815;Dbxref=GenBank:WP_001046306.1;Name=WP_001046306.1;gbkey=CDS;gene=rclA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414838.2;locus_tag=AD39_RS21815;product=reactive chlorine resistance oxidoreductase RclA;protein_id=WP_001046306.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 58332 59186 . + . ID=gene-AD39_RS21810;Name=rclR;gbkey=Gene;gene=rclR;gene_biotype=protein_coding;locus_tag=AD39_RS21810;old_locus_tag=AD39_0311 NZ_JJLH01000007.1 Protein Homology CDS 58332 59186 . + 0 ID=cds-WP_000339593.1;Parent=gene-AD39_RS21810;Dbxref=GenBank:WP_000339593.1;Name=WP_000339593.1;gbkey=CDS;gene=rclR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308370.1;locus_tag=AD39_RS21810;product=reactive chlorine-specific transcriptional regulator RclR;protein_id=WP_000339593.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 59714 60433 . + . ID=gene-AD39_RS21805;Name=ykgE;gbkey=Gene;gene=ykgE;gene_biotype=protein_coding;locus_tag=AD39_RS21805;old_locus_tag=AD39_0312 NZ_JJLH01000007.1 Protein Homology CDS 59714 60433 . + 0 ID=cds-WP_001102119.1;Parent=gene-AD39_RS21805;Dbxref=GenBank:WP_001102119.1;Name=WP_001102119.1;Ontology_term=GO:0016491,GO:0046872,GO:0051536;gbkey=CDS;gene=ykgE;go_function=oxidoreductase activity|0016491||IEA,metal ion binding|0046872||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308371.1;locus_tag=AD39_RS21805;product=(Fe-S)-binding protein;protein_id=WP_001102119.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 60444 61871 . + . ID=gene-AD39_RS21800;Name=ykgF;gbkey=Gene;gene=ykgF;gene_biotype=protein_coding;locus_tag=AD39_RS21800;old_locus_tag=AD39_0313 NZ_JJLH01000007.1 Protein Homology CDS 60444 61871 . + 0 ID=cds-WP_032283016.1;Parent=gene-AD39_RS21800;Dbxref=GenBank:WP_032283016.1;Name=WP_032283016.1;Ontology_term=GO:0006089,GO:0051536;gbkey=CDS;gene=ykgF;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=lactate metabolic process|0006089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706212.1;locus_tag=AD39_RS21800;product=LutB/LldF family L-lactate oxidation iron-sulfur protein;protein_id=WP_032283016.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 61864 62559 . + . ID=gene-AD39_RS21795;Name=ykgG;gbkey=Gene;gene=ykgG;gene_biotype=protein_coding;locus_tag=AD39_RS21795;old_locus_tag=AD39_0314 NZ_JJLH01000007.1 Protein Homology CDS 61864 62559 . + 0 ID=cds-WP_000370307.1;Parent=gene-AD39_RS21795;Dbxref=GenBank:WP_000370307.1;Name=WP_000370307.1;Ontology_term=GO:0006089;gbkey=CDS;gene=ykgG;go_process=lactate metabolic process|0006089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414842.4;locus_tag=AD39_RS21795;product=LutC/YkgG family protein;protein_id=WP_000370307.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 62802 63470 . - . ID=gene-AD39_RS21785;Name=ykgH;gbkey=Gene;gene=ykgH;gene_biotype=protein_coding;locus_tag=AD39_RS21785;old_locus_tag=AD39_0316 NZ_JJLH01000007.1 Protein Homology CDS 62802 63470 . - 0 ID=cds-WP_032283017.1;Parent=gene-AD39_RS21785;Dbxref=GenBank:WP_032283017.1;Name=WP_032283017.1;gbkey=CDS;gene=ykgH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414844.1;locus_tag=AD39_RS21785;product=protein YkgH;protein_id=WP_032283017.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 63683 65353 . - . ID=gene-AD39_RS21780;Name=betA;gbkey=Gene;gene=betA;gene_biotype=protein_coding;locus_tag=AD39_RS21780;old_locus_tag=AD39_0317 NZ_JJLH01000007.1 Protein Homology CDS 63683 65353 . - 0 ID=cds-WP_001159105.1;Parent=gene-AD39_RS21780;Dbxref=GenBank:WP_001159105.1;Name=WP_001159105.1;Ontology_term=GO:0019285,GO:0008812;gbkey=CDS;gene=betA;go_function=choline dehydrogenase activity|0008812||IEA;go_process=glycine betaine biosynthetic process from choline|0019285||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414845.1;locus_tag=AD39_RS21780;product=choline dehydrogenase;protein_id=WP_001159105.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 65367 66839 . - . ID=gene-AD39_RS21775;Name=betB;gbkey=Gene;gene=betB;gene_biotype=protein_coding;locus_tag=AD39_RS21775;old_locus_tag=AD39_0318 NZ_JJLH01000007.1 Protein Homology CDS 65367 66839 . - 0 ID=cds-WP_000089075.1;Parent=gene-AD39_RS21775;Dbxref=GenBank:WP_000089075.1;Name=WP_000089075.1;Ontology_term=GO:0019285,GO:0008802,GO:0046872;gbkey=CDS;gene=betB;go_function=betaine-aldehyde dehydrogenase (NAD+) activity|0008802||IEA,metal ion binding|0046872||IEA;go_process=glycine betaine biosynthetic process from choline|0019285||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414846.1;locus_tag=AD39_RS21775;product=betaine-aldehyde dehydrogenase;protein_id=WP_000089075.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 66853 67440 . - . ID=gene-AD39_RS21770;Name=betI;gbkey=Gene;gene=betI;gene_biotype=protein_coding;locus_tag=AD39_RS21770;old_locus_tag=AD39_0319 NZ_JJLH01000007.1 Protein Homology CDS 66853 67440 . - 0 ID=cds-WP_001295527.1;Parent=gene-AD39_RS21770;Dbxref=GenBank:WP_001295527.1;Name=WP_001295527.1;Ontology_term=GO:0003677;gbkey=CDS;gene=betI;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308386.3;locus_tag=AD39_RS21770;product=transcriptional regulator BetI;protein_id=WP_001295527.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 67569 69602 . + . ID=gene-AD39_RS21765;Name=betT;gbkey=Gene;gene=betT;gene_biotype=protein_coding;locus_tag=AD39_RS21765;old_locus_tag=AD39_0320 NZ_JJLH01000007.1 Protein Homology CDS 67569 69602 . + 0 ID=cds-WP_000131044.1;Parent=gene-AD39_RS21765;Dbxref=GenBank:WP_000131044.1;Name=WP_000131044.1;gbkey=CDS;gene=betT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308387.1;locus_tag=AD39_RS21765;product=choline BCCT transporter BetT;protein_id=WP_000131044.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 69908 69982 . + . ID=gene-AD39_RS28835;Name=AD39_RS28835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28835 NZ_JJLH01000007.1 Protein Homology CDS 69908 69982 . + 0 ID=cds-WP_122654176.1;Parent=gene-AD39_RS28835;Dbxref=GenBank:WP_122654176.1;Name=WP_122654176.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518747.1;locus_tag=AD39_RS28835;product=hypothetical protein;protein_id=WP_122654176.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 70477 71565 . + . ID=gene-AD39_RS21760;Name=pdeL;gbkey=Gene;gene=pdeL;gene_biotype=protein_coding;locus_tag=AD39_RS21760;old_locus_tag=AD39_0321 NZ_JJLH01000007.1 Protein Homology CDS 70477 71565 . + 0 ID=cds-WP_001324749.1;Parent=gene-AD39_RS21760;Dbxref=GenBank:WP_001324749.1;Name=WP_001324749.1;gbkey=CDS;gene=pdeL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414849.1;locus_tag=AD39_RS21760;product=DNA-binding transcriptional activator/c-di-GMP phosphodiesterase PdeL;protein_id=WP_001324749.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 71607 72539 . - . ID=gene-AD39_RS21755;Name=yahB;gbkey=Gene;gene=yahB;gene_biotype=protein_coding;locus_tag=AD39_RS21755;old_locus_tag=AD39_0322 NZ_JJLH01000007.1 Protein Homology CDS 71607 72539 . - 0 ID=cds-WP_001089565.1;Parent=gene-AD39_RS21755;Dbxref=GenBank:WP_001089565.1;Name=WP_001089565.1;gbkey=CDS;gene=yahB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414850.1;locus_tag=AD39_RS21755;product=LysR substrate-binding domain-containing protein;protein_id=WP_001089565.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 72631 73128 . - . ID=gene-AD39_RS21750;Name=yahC;gbkey=Gene;gene=yahC;gene_biotype=protein_coding;locus_tag=AD39_RS21750;old_locus_tag=AD39_0323 NZ_JJLH01000007.1 Protein Homology CDS 72631 73128 . - 0 ID=cds-WP_001013885.1;Parent=gene-AD39_RS21750;Dbxref=GenBank:WP_001013885.1;Name=WP_001013885.1;Ontology_term=GO:0005886;gbkey=CDS;gene=yahC;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414851.1;locus_tag=AD39_RS21750;product=DUF1097 domain-containing protein;protein_id=WP_001013885.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 73386 73991 . + . ID=gene-AD39_RS21745;Name=yahD;gbkey=Gene;gene=yahD;gene_biotype=protein_coding;locus_tag=AD39_RS21745;old_locus_tag=AD39_0324 NZ_JJLH01000007.1 Protein Homology CDS 73386 73991 . + 0 ID=cds-WP_000023635.1;Parent=gene-AD39_RS21745;Dbxref=GenBank:WP_000023635.1;Name=WP_000023635.1;Ontology_term=GO:0005515;gbkey=CDS;gene=yahD;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414852.1;locus_tag=AD39_RS21745;product=ankyrin repeat domain-containing protein;protein_id=WP_000023635.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 74031 74894 . + . ID=gene-AD39_RS21740;Name=yahE;gbkey=Gene;gene=yahE;gene_biotype=protein_coding;locus_tag=AD39_RS21740;old_locus_tag=AD39_0325 NZ_JJLH01000007.1 Protein Homology CDS 74031 74894 . + 0 ID=cds-WP_023140175.1;Parent=gene-AD39_RS21740;Dbxref=GenBank:WP_023140175.1;Name=WP_023140175.1;gbkey=CDS;gene=yahE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414853.1;locus_tag=AD39_RS21740;product=DUF2877 domain-containing protein;protein_id=WP_023140175.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 74884 76431 . + . ID=gene-AD39_RS21735;Name=fdrA;gbkey=Gene;gene=fdrA;gene_biotype=protein_coding;locus_tag=AD39_RS21735;old_locus_tag=AD39_0326 NZ_JJLH01000007.1 Protein Homology CDS 74884 76431 . + 0 ID=cds-WP_000111776.1;Parent=gene-AD39_RS21735;Dbxref=GenBank:WP_000111776.1;Name=WP_000111776.1;Ontology_term=GO:0003824;gbkey=CDS;gene=fdrA;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414854.1;locus_tag=AD39_RS21735;product=acyl-CoA synthetase FdrA;protein_id=WP_000111776.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 76431 77849 . + . ID=gene-AD39_RS21730;Name=yahG;gbkey=Gene;gene=yahG;gene_biotype=protein_coding;locus_tag=AD39_RS21730;old_locus_tag=AD39_0327 NZ_JJLH01000007.1 Protein Homology CDS 76431 77849 . + 0 ID=cds-WP_032287482.1;Parent=gene-AD39_RS21730;Dbxref=GenBank:WP_032287482.1;Name=WP_032287482.1;gbkey=CDS;gene=yahG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414855.1;locus_tag=AD39_RS21730;product=DUF1116 domain-containing protein;protein_id=WP_032287482.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 77992 78942 . + . ID=gene-AD39_RS21725;Name=yahI;gbkey=Gene;gene=yahI;gene_biotype=protein_coding;locus_tag=AD39_RS21725;old_locus_tag=AD39_0328 NZ_JJLH01000007.1 Protein Homology CDS 77992 78942 . + 0 ID=cds-WP_000661649.1;Parent=gene-AD39_RS21725;Dbxref=GenBank:WP_000661649.1;Name=WP_000661649.1;gbkey=CDS;gene=yahI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414857.1;locus_tag=AD39_RS21725;product=carbamate kinase family protein;protein_id=WP_000661649.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 78952 80334 . + . ID=gene-AD39_RS21720;Name=yahJ;gbkey=Gene;gene=yahJ;gene_biotype=protein_coding;locus_tag=AD39_RS21720;old_locus_tag=AD39_0329 NZ_JJLH01000007.1 Protein Homology CDS 78952 80334 . + 0 ID=cds-WP_000665130.1;Parent=gene-AD39_RS21720;Dbxref=GenBank:WP_000665130.1;Name=WP_000665130.1;gbkey=CDS;gene=yahJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414858.1;locus_tag=AD39_RS21720;product=amidohydrolase family protein;protein_id=WP_000665130.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 80633 81043 . + . ID=gene-AD39_RS21715;Name=AD39_RS21715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS21715;old_locus_tag=AD39_0330 NZ_JJLH01000007.1 Protein Homology CDS 80633 81043 . + 0 ID=cds-WP_001542684.1;Parent=gene-AD39_RS21715;Dbxref=GenBank:WP_001542684.1;Name=WP_001542684.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502591.1;locus_tag=AD39_RS21715;product=ASCH domain-containing protein;protein_id=WP_001542684.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 81297 82280 . + . ID=gene-AD39_RS21710;Name=AD39_RS21710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS21710;old_locus_tag=AD39_0331 NZ_JJLH01000007.1 Protein Homology CDS 81297 82280 . + 0 ID=cds-WP_032287484.1;Parent=gene-AD39_RS21710;Dbxref=GenBank:WP_032287484.1;Name=WP_032287484.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005224897.1;locus_tag=AD39_RS21710;product=autoinducer 2 ABC transporter substrate-binding protein;protein_id=WP_032287484.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 82329 83813 . + . ID=gene-AD39_RS21705;Name=AD39_RS21705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS21705;old_locus_tag=AD39_0332 NZ_JJLH01000007.1 Protein Homology CDS 82329 83813 . + 0 ID=cds-WP_001464163.1;Parent=gene-AD39_RS21705;Dbxref=GenBank:WP_001464163.1;Name=WP_001464163.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308402.2;locus_tag=AD39_RS21705;product=sugar ABC transporter ATP-binding protein;protein_id=WP_001464163.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 83806 84777 . + . ID=gene-AD39_RS21700;Name=AD39_RS21700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS21700;old_locus_tag=AD39_0333 NZ_JJLH01000007.1 Protein Homology CDS 83806 84777 . + 0 ID=cds-WP_000818900.1;Parent=gene-AD39_RS21700;Dbxref=GenBank:WP_000818900.1;Name=WP_000818900.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308404.1;locus_tag=AD39_RS21700;product=ABC transporter permease;protein_id=WP_000818900.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 84774 85730 . + . ID=gene-AD39_RS21695;Name=AD39_RS21695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS21695;old_locus_tag=AD39_0334 NZ_JJLH01000007.1 Protein Homology CDS 84774 85730 . + 0 ID=cds-WP_000750340.1;Parent=gene-AD39_RS21695;Dbxref=GenBank:WP_000750340.1;Name=WP_000750340.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308405.1;locus_tag=AD39_RS21695;product=ABC transporter permease;protein_id=WP_000750340.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 85817 86866 . + . ID=gene-AD39_RS21690;Name=yahK;gbkey=Gene;gene=yahK;gene_biotype=protein_coding;locus_tag=AD39_RS21690;old_locus_tag=AD39_0335 NZ_JJLH01000007.1 Protein Homology CDS 85817 86866 . + 0 ID=cds-WP_000692742.1;Parent=gene-AD39_RS21690;Dbxref=GenBank:WP_000692742.1;Name=WP_000692742.1;gbkey=CDS;gene=yahK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308406.1;locus_tag=AD39_RS21690;product=NADPH-dependent aldehyde reductase YahK;protein_id=WP_000692742.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 87109 87924 . + . ID=gene-AD39_RS21685;Name=yahL;gbkey=Gene;gene=yahL;gene_biotype=protein_coding;locus_tag=AD39_RS21685;old_locus_tag=AD39_0336 NZ_JJLH01000007.1 Protein Homology CDS 87109 87924 . + 0 ID=cds-WP_001316893.1;Parent=gene-AD39_RS21685;Dbxref=GenBank:WP_001316893.1;Name=WP_001316893.1;gbkey=CDS;gene=yahL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414860.1;locus_tag=AD39_RS21685;product=protein YahL;protein_id=WP_001316893.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 88336 88581 . + . ID=gene-AD39_RS0123325;Name=yahM;gbkey=Gene;gene=yahM;gene_biotype=protein_coding;locus_tag=AD39_RS0123325 NZ_JJLH01000007.1 Protein Homology CDS 88336 88581 . + 0 ID=cds-WP_000290608.1;Parent=gene-AD39_RS0123325;Dbxref=GenBank:WP_000290608.1;Name=WP_000290608.1;gbkey=CDS;gene=yahM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414861.2;locus_tag=AD39_RS0123325;product=protein YahM;protein_id=WP_000290608.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 88598 89269 . - . ID=gene-AD39_RS21680;Name=yahN;gbkey=Gene;gene=yahN;gene_biotype=protein_coding;locus_tag=AD39_RS21680;old_locus_tag=AD39_0338 NZ_JJLH01000007.1 Protein Homology CDS 88598 89269 . - 0 ID=cds-WP_077755961.1;Parent=gene-AD39_RS21680;Dbxref=GenBank:WP_077755961.1;Name=WP_077755961.1;gbkey=CDS;gene=yahN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414862.1;locus_tag=AD39_RS21680;product=LysE family transporter;protein_id=WP_077755961.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 89416 89691 . + . ID=gene-AD39_RS21675;Name=yahO;gbkey=Gene;gene=yahO;gene_biotype=protein_coding;locus_tag=AD39_RS21675;old_locus_tag=AD39_0339 NZ_JJLH01000007.1 Protein Homology CDS 89416 89691 . + 0 ID=cds-WP_000691953.1;Parent=gene-AD39_RS21675;Dbxref=GenBank:WP_000691953.1;Name=WP_000691953.1;gbkey=CDS;gene=yahO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308410.1;locus_tag=AD39_RS21675;product=DUF1471 family periplasmic protein YahO;protein_id=WP_000691953.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 89789 91375 . - . ID=gene-AD39_RS21670;Name=prpR;gbkey=Gene;gene=prpR;gene_biotype=protein_coding;locus_tag=AD39_RS21670;old_locus_tag=AD39_0341 NZ_JJLH01000007.1 Protein Homology CDS 89789 91375 . - 0 ID=cds-WP_000941071.1;Parent=gene-AD39_RS21670;Dbxref=GenBank:WP_000941071.1;Name=WP_000941071.1;gbkey=CDS;gene=prpR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308411.1;locus_tag=AD39_RS21670;product=propionate catabolism operon regulatory protein PrpR;protein_id=WP_000941071.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 91614 92504 . + . ID=gene-AD39_RS21665;Name=prpB;gbkey=Gene;gene=prpB;gene_biotype=protein_coding;locus_tag=AD39_RS21665;old_locus_tag=AD39_0342 NZ_JJLH01000007.1 Protein Homology CDS 91614 92504 . + 0 ID=cds-WP_000052205.1;Parent=gene-AD39_RS21665;Dbxref=GenBank:WP_000052205.1;Name=WP_000052205.1;Ontology_term=GO:0019629,GO:0046421;gbkey=CDS;gene=prpB;go_function=methylisocitrate lyase activity|0046421||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414865.1;locus_tag=AD39_RS21665;product=methylisocitrate lyase;protein_id=WP_000052205.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 92549 93718 . + . ID=gene-AD39_RS21660;Name=prpC;gbkey=Gene;gene=prpC;gene_biotype=protein_coding;locus_tag=AD39_RS21660;old_locus_tag=AD39_0343 NZ_JJLH01000007.1 Protein Homology CDS 92549 93718 . + 0 ID=cds-WP_001285908.1;Parent=gene-AD39_RS21660;Dbxref=GenBank:WP_001285908.1;Name=WP_001285908.1;Ontology_term=GO:0019679,GO:0004108,GO:0050440;gbkey=CDS;gene=prpC;go_function=citrate (Si)-synthase activity|0004108||IEA,2-methylcitrate synthase activity|0050440||IEA;go_process=propionate metabolic process%2C methylcitrate cycle|0019679||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414867.1;locus_tag=AD39_RS21660;product=bifunctional 2-methylcitrate synthase/citrate synthase;protein_id=WP_001285908.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 93752 95203 . + . ID=gene-AD39_RS21655;Name=prpD;gbkey=Gene;gene=prpD;gene_biotype=protein_coding;locus_tag=AD39_RS21655;old_locus_tag=AD39_0344 NZ_JJLH01000007.1 Protein Homology CDS 93752 95203 . + 0 ID=cds-WP_001275861.1;Parent=gene-AD39_RS21655;Dbxref=GenBank:WP_001275861.1;Name=WP_001275861.1;Ontology_term=GO:0019679,GO:0047547,GO:0051537;gbkey=CDS;gene=prpD;go_function=2-methylcitrate dehydratase activity|0047547||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=propionate metabolic process%2C methylcitrate cycle|0019679||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414868.1;locus_tag=AD39_RS21655;product=2-methylcitrate dehydratase;protein_id=WP_001275861.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 95243 97129 . + . ID=gene-AD39_RS21650;Name=prpE;gbkey=Gene;gene=prpE;gene_biotype=protein_coding;locus_tag=AD39_RS21650;old_locus_tag=AD39_0345 NZ_JJLH01000007.1 Protein Homology CDS 95243 97129 . + 0 ID=cds-WP_000010296.1;Parent=gene-AD39_RS21650;Dbxref=GenBank:WP_000010296.1;Name=WP_000010296.1;Ontology_term=GO:0019629,GO:0050218;gbkey=CDS;gene=prpE;go_function=propionate-CoA ligase activity|0050218||IEA;go_process=propionate catabolic process%2C 2-methylcitrate cycle|0019629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308415.1;locus_tag=AD39_RS21650;product=propionate--CoA ligase;protein_id=WP_000010296.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 97366 98625 . + . ID=gene-AD39_RS21645;Name=codB;gbkey=Gene;gene=codB;gene_biotype=protein_coding;locus_tag=AD39_RS21645;old_locus_tag=AD39_0346 NZ_JJLH01000007.1 Protein Homology CDS 97366 98625 . + 0 ID=cds-WP_000076233.1;Parent=gene-AD39_RS21645;Dbxref=GenBank:WP_000076233.1;Name=WP_000076233.1;Ontology_term=GO:0055085,GO:0015209,GO:0016020;gbkey=CDS;gene=codB;go_component=membrane|0016020||IEA;go_function=cytosine transmembrane transporter activity|0015209||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414870.1;locus_tag=AD39_RS21645;product=cytosine permease;protein_id=WP_000076233.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 98615 99898 . + . ID=gene-AD39_RS21640;Name=codA;gbkey=Gene;gene=codA;gene_biotype=protein_coding;locus_tag=AD39_RS21640;old_locus_tag=AD39_0347 NZ_JJLH01000007.1 Protein Homology CDS 98615 99898 . + 0 ID=cds-WP_001457699.1;Parent=gene-AD39_RS21640;Dbxref=GenBank:WP_001457699.1;Name=WP_001457699.1;gbkey=CDS;gene=codA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414871.1;locus_tag=AD39_RS21640;product=cytosine/isoguanine deaminase;protein_id=WP_001457699.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 99938 100837 . - . ID=gene-AD39_RS21635;Name=cynR;gbkey=Gene;gene=cynR;gene_biotype=protein_coding;locus_tag=AD39_RS21635;old_locus_tag=AD39_0348 NZ_JJLH01000007.1 Protein Homology CDS 99938 100837 . - 0 ID=cds-WP_000952482.1;Parent=gene-AD39_RS21635;Dbxref=GenBank:WP_000952482.1;Name=WP_000952482.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=cynR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308418.1;locus_tag=AD39_RS21635;product=transcriptional regulator CynR;protein_id=WP_000952482.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 100947 101606 . + . ID=gene-AD39_RS21630;Name=cynT;gbkey=Gene;gene=cynT;gene_biotype=protein_coding;locus_tag=AD39_RS21630;old_locus_tag=AD39_0349 NZ_JJLH01000007.1 Protein Homology CDS 100947 101606 . + 0 ID=cds-WP_000658652.1;Parent=gene-AD39_RS21630;Dbxref=GenBank:WP_000658652.1;Name=WP_000658652.1;gbkey=CDS;gene=cynT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414873.1;locus_tag=AD39_RS21630;product=carbonic anhydrase CynT;protein_id=WP_000658652.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 101637 102107 . + . ID=gene-AD39_RS21625;Name=cynS;gbkey=Gene;gene=cynS;gene_biotype=protein_coding;locus_tag=AD39_RS21625;old_locus_tag=AD39_0350 NZ_JJLH01000007.1 Protein Homology CDS 101637 102107 . + 0 ID=cds-WP_000616241.1;Parent=gene-AD39_RS21625;Dbxref=GenBank:WP_000616241.1;Name=WP_000616241.1;Ontology_term=GO:0009439,GO:0008824;gbkey=CDS;gene=cynS;go_function=cyanate hydratase activity|0008824||IEA;go_process=cyanate metabolic process|0009439||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308420.1;locus_tag=AD39_RS21625;product=cyanase;protein_id=WP_000616241.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 102113 103294 . + . ID=gene-AD39_RS21620;Name=cynX;gbkey=Gene;gene=cynX;gene_biotype=protein_coding;locus_tag=AD39_RS21620;old_locus_tag=AD39_0351 NZ_JJLH01000007.1 Protein Homology CDS 102113 103294 . + 0 ID=cds-WP_032287485.1;Parent=gene-AD39_RS21620;Dbxref=GenBank:WP_032287485.1;Name=WP_032287485.1;gbkey=CDS;gene=cynX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308421.2;locus_tag=AD39_RS21620;product=cyanate transporter CynX;protein_id=WP_032287485.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 103397 104008 . - . ID=gene-AD39_RS21615;Name=lacA;gbkey=Gene;gene=lacA;gene_biotype=protein_coding;locus_tag=AD39_RS21615;old_locus_tag=AD39_0352 NZ_JJLH01000007.1 Protein Homology CDS 103397 104008 . - 0 ID=cds-WP_001315293.1;Parent=gene-AD39_RS21615;Dbxref=GenBank:WP_001315293.1;Name=WP_001315293.1;gbkey=CDS;gene=lacA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308422.1;locus_tag=AD39_RS21615;product=galactoside O-acetyltransferase;protein_id=WP_001315293.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 104074 105327 . - . ID=gene-AD39_RS21610;Name=lacY;gbkey=Gene;gene=lacY;gene_biotype=protein_coding;locus_tag=AD39_RS21610;old_locus_tag=AD39_0353 NZ_JJLH01000007.1 Protein Homology CDS 104074 105327 . - 0 ID=cds-WP_000291549.1;Parent=gene-AD39_RS21610;Dbxref=GenBank:WP_000291549.1;Name=WP_000291549.1;gbkey=CDS;gene=lacY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414877.1;locus_tag=AD39_RS21610;product=lactose permease;protein_id=WP_000291549.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 105379 108453 . - . ID=gene-AD39_RS21605;Name=lacZ;gbkey=Gene;gene=lacZ;gene_biotype=protein_coding;locus_tag=AD39_RS21605;old_locus_tag=AD39_0354 NZ_JJLH01000007.1 Protein Homology CDS 105379 108453 . - 0 ID=cds-WP_032283020.1;Parent=gene-AD39_RS21605;Dbxref=GenBank:WP_032283020.1;Name=WP_032283020.1;gbkey=CDS;gene=lacZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414878.1;locus_tag=AD39_RS21605;product=beta-galactosidase;protein_id=WP_032283020.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 108576 109658 . - . ID=gene-AD39_RS21600;Name=lacI;gbkey=Gene;gene=lacI;gene_biotype=protein_coding;locus_tag=AD39_RS21600;old_locus_tag=AD39_0355 NZ_JJLH01000007.1 Protein Homology CDS 108576 109658 . - 0 ID=cds-WP_000805902.1;Parent=gene-AD39_RS21600;Dbxref=GenBank:WP_000805902.1;Name=WP_000805902.1;gbkey=CDS;gene=lacI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414879.3;locus_tag=AD39_RS21600;product=DNA-binding transcriptional repressor LacI;protein_id=WP_000805902.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 109735 110568 . - . ID=gene-AD39_RS21595;Name=mhpR;gbkey=Gene;gene=mhpR;gene_biotype=protein_coding;locus_tag=AD39_RS21595;old_locus_tag=AD39_0356 NZ_JJLH01000007.1 Protein Homology CDS 109735 110568 . - 0 ID=cds-WP_001306931.1;Parent=gene-AD39_RS21595;Dbxref=GenBank:WP_001306931.1;Name=WP_001306931.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=mhpR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414880.2;locus_tag=AD39_RS21595;product=DNA-binding transcriptional regulator;protein_id=WP_001306931.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 110759 112423 . + . ID=gene-AD39_RS21590;Name=mhpA;gbkey=Gene;gene=mhpA;gene_biotype=protein_coding;locus_tag=AD39_RS21590;old_locus_tag=AD39_0357 NZ_JJLH01000007.1 Protein Homology CDS 110759 112423 . + 0 ID=cds-WP_001007448.1;Parent=gene-AD39_RS21590;Dbxref=GenBank:WP_001007448.1;Name=WP_001007448.1;Ontology_term=GO:0019622,GO:0008688;gbkey=CDS;gene=mhpA;go_function=3-(3-hydroxyphenyl)propionate hydroxylase activity|0008688||IEA;go_process=3-(3-hydroxy)phenylpropionate catabolic process|0019622||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308429.1;locus_tag=AD39_RS21590;product=bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;protein_id=WP_001007448.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 112425 113369 . + . ID=gene-AD39_RS21585;Name=mhpB;gbkey=Gene;gene=mhpB;gene_biotype=protein_coding;locus_tag=AD39_RS21585;old_locus_tag=AD39_0358 NZ_JJLH01000007.1 Protein Homology CDS 112425 113369 . + 0 ID=cds-WP_001398695.1;Parent=gene-AD39_RS21585;Dbxref=GenBank:WP_001398695.1;Name=WP_001398695.1;gbkey=CDS;gene=mhpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308430.1;locus_tag=AD39_RS21585;product=2%2C3-dihydroxyphenylpropionate/2%2C3-dihydroxicinnamic acid 1%2C2-dioxygenase;protein_id=WP_001398695.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 113387 114253 . + . ID=gene-AD39_RS21580;Name=mhpC;gbkey=Gene;gene=mhpC;gene_biotype=protein_coding;locus_tag=AD39_RS21580;old_locus_tag=AD39_0359 NZ_JJLH01000007.1 Protein Homology CDS 113387 114253 . + 0 ID=cds-WP_000121898.1;Parent=gene-AD39_RS21580;Dbxref=GenBank:WP_000121898.1;Name=WP_000121898.1;gbkey=CDS;gene=mhpC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414883.5;locus_tag=AD39_RS21580;product=2-hydroxy-6-oxonona-2%2C4-dienedioate hydrolase;protein_id=WP_000121898.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 114263 115072 . + . ID=gene-AD39_RS21575;Name=mhpD;gbkey=Gene;gene=mhpD;gene_biotype=protein_coding;locus_tag=AD39_RS21575;old_locus_tag=AD39_0360 NZ_JJLH01000007.1 Protein Homology CDS 114263 115072 . + 0 ID=cds-WP_000160724.1;Parent=gene-AD39_RS21575;Dbxref=GenBank:WP_000160724.1;Name=WP_000160724.1;gbkey=CDS;gene=mhpD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308432.2;locus_tag=AD39_RS21575;product=2-keto-4-pentenoate hydratase;protein_id=WP_000160724.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 115069 116019 . + . ID=gene-AD39_RS21570;Name=mhpF;gbkey=Gene;gene=mhpF;gene_biotype=protein_coding;locus_tag=AD39_RS21570;old_locus_tag=AD39_0361 NZ_JJLH01000007.1 Protein Homology CDS 115069 116019 . + 0 ID=cds-WP_000044314.1;Parent=gene-AD39_RS21570;Dbxref=GenBank:WP_000044314.1;Name=WP_000044314.1;gbkey=CDS;gene=mhpF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414885.1;locus_tag=AD39_RS21570;product=acetaldehyde dehydrogenase;protein_id=WP_000044314.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 116016 117029 . + . ID=gene-AD39_RS21565;Name=mhpE;gbkey=Gene;gene=mhpE;gene_biotype=protein_coding;locus_tag=AD39_RS21565;old_locus_tag=AD39_0362 NZ_JJLH01000007.1 Protein Homology CDS 116016 117029 . + 0 ID=cds-WP_001013499.1;Parent=gene-AD39_RS21565;Dbxref=GenBank:WP_001013499.1;Name=WP_001013499.1;gbkey=CDS;gene=mhpE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414886.1;locus_tag=AD39_RS21565;product=4-hydroxy-2-oxovalerate aldolase;protein_id=WP_001013499.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 117205 118416 . + . ID=gene-AD39_RS21560;Name=mhpT;gbkey=Gene;gene=mhpT;gene_biotype=protein_coding;locus_tag=AD39_RS21560;old_locus_tag=AD39_0363 NZ_JJLH01000007.1 Protein Homology CDS 117205 118416 . + 0 ID=cds-WP_001460528.1;Parent=gene-AD39_RS21560;Dbxref=GenBank:WP_001460528.1;Name=WP_001460528.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mhpT;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308435.2;locus_tag=AD39_RS21560;product=3-(3-hydroxy-phenyl)propionate transporter MhpT;protein_id=WP_001460528.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 118518 119057 . + . ID=gene-AD39_RS21555;Name=yaiL;gbkey=Gene;gene=yaiL;gene_biotype=protein_coding;locus_tag=AD39_RS21555;old_locus_tag=AD39_0364 NZ_JJLH01000007.1 Protein Homology CDS 118518 119057 . + 0 ID=cds-WP_001096705.1;Parent=gene-AD39_RS21555;Dbxref=GenBank:WP_001096705.1;Name=WP_001096705.1;gbkey=CDS;gene=yaiL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414888.4;locus_tag=AD39_RS21555;product=DUF2058 domain-containing protein;protein_id=WP_001096705.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 119282 120115 . - . ID=gene-AD39_RS21550;Name=fghA;gbkey=Gene;gene=fghA;gene_biotype=protein_coding;locus_tag=AD39_RS21550;old_locus_tag=AD39_0365 NZ_JJLH01000007.1 Protein Homology CDS 119282 120115 . - 0 ID=cds-WP_000419049.1;Parent=gene-AD39_RS21550;Dbxref=GenBank:WP_000419049.1;Name=WP_000419049.1;Ontology_term=GO:0046294,GO:0018738;gbkey=CDS;gene=fghA;go_function=S-formylglutathione hydrolase activity|0018738||IEA;go_process=formaldehyde catabolic process|0046294||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414889.1;locus_tag=AD39_RS21550;product=S-formylglutathione hydrolase;protein_id=WP_000419049.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 120208 121317 . - . ID=gene-AD39_RS21545;Name=frmA;gbkey=Gene;gene=frmA;gene_biotype=protein_coding;locus_tag=AD39_RS21545;old_locus_tag=AD39_0366 NZ_JJLH01000007.1 Protein Homology CDS 120208 121317 . - 0 ID=cds-WP_000842102.1;Parent=gene-AD39_RS21545;Dbxref=GenBank:WP_000842102.1;Name=WP_000842102.1;gbkey=CDS;gene=frmA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308438.1;locus_tag=AD39_RS21545;product=S-(hydroxymethyl)glutathione dehydrogenase;protein_id=WP_000842102.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 121352 121627 . - . ID=gene-AD39_RS21540;Name=frmR;gbkey=Gene;gene=frmR;gene_biotype=protein_coding;locus_tag=AD39_RS21540;old_locus_tag=AD39_0367 NZ_JJLH01000007.1 Protein Homology CDS 121352 121627 . - 0 ID=cds-WP_001141271.1;Parent=gene-AD39_RS21540;Dbxref=GenBank:WP_001141271.1;Name=WP_001141271.1;gbkey=CDS;gene=frmR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414891.4;locus_tag=AD39_RS21540;product=formaldehyde-responsive transcriptional repressor FrmR;protein_id=WP_001141271.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 121812 122585 . - . ID=gene-AD39_RS21535;Name=yaiO;gbkey=Gene;gene=yaiO;gene_biotype=protein_coding;locus_tag=AD39_RS21535;old_locus_tag=AD39_0368 NZ_JJLH01000007.1 Protein Homology CDS 121812 122585 . - 0 ID=cds-WP_000596085.1;Parent=gene-AD39_RS21535;Dbxref=GenBank:WP_000596085.1;Name=WP_000596085.1;gbkey=CDS;gene=yaiO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414892.1;locus_tag=AD39_RS21535;product=YaiO family outer membrane beta-barrel protein;protein_id=WP_000596085.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 122587 123168 . - . ID=gene-AD39_RS21530;Name=AD39_RS21530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS21530;old_locus_tag=AD39_0369 NZ_JJLH01000007.1 Protein Homology CDS 122587 123168 . - 0 ID=cds-WP_024194469.1;Parent=gene-AD39_RS21530;Dbxref=GenBank:WP_024194469.1;Name=WP_024194469.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001308433.1;locus_tag=AD39_RS21530;product=acetyltransferase;protein_id=WP_024194469.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 123146 124342 . - . ID=gene-AD39_RS21525;Name=yaiP;gbkey=Gene;gene=yaiP;gene_biotype=protein_coding;locus_tag=AD39_RS21525;old_locus_tag=AD39_0370 NZ_JJLH01000007.1 Protein Homology CDS 123146 124342 . - 0 ID=cds-WP_000860438.1;Parent=gene-AD39_RS21525;Dbxref=GenBank:WP_000860438.1;Name=WP_000860438.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;gene=yaiP;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414897.1;locus_tag=AD39_RS21525;product=glycosyltransferase;protein_id=WP_000860438.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 124367 124486 . + . ID=gene-AD39_RS30095;Name=AD39_RS30095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30095 NZ_JJLH01000007.1 Protein Homology CDS 124367 124486 . + 0 ID=cds-WP_122995270.1;Parent=gene-AD39_RS30095;Dbxref=GenBank:WP_122995270.1;Name=WP_122995270.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF048625.1;locus_tag=AD39_RS30095;product=hypothetical protein;protein_id=WP_122995270.1;transl_table=11 NZ_JJLH01000007.1 RefSeq pseudogene 124613 125023 . - . ID=gene-AD39_RS30100;Name=AD39_RS30100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30100;partial=true;pseudo=true;start_range=.,124613 NZ_JJLH01000007.1 Protein Homology CDS 124613 125023 . - 0 ID=cds-AD39_RS30100;Parent=gene-AD39_RS30100;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0019213;gbkey=CDS;go_function=deacetylase activity|0019213||IEA;inference=COORDINATES: protein motif:HMM:NF014625.6;locus_tag=AD39_RS30100;partial=true;product=PIG-L deacetylase family protein;pseudo=true;start_range=.,124613;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 125639 126601 . + . ID=gene-AD39_RS21515;Name=tauA;gbkey=Gene;gene=tauA;gene_biotype=protein_coding;locus_tag=AD39_RS21515;old_locus_tag=AD39_0372 NZ_JJLH01000007.1 Protein Homology CDS 125639 126601 . + 0 ID=cds-WP_001297135.1;Parent=gene-AD39_RS21515;Dbxref=GenBank:WP_001297135.1;Name=WP_001297135.1;Ontology_term=GO:0055085,GO:0015411,GO:0042597,GO:0043190;gbkey=CDS;gene=tauA;go_component=periplasmic space|0042597||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type taurine transporter transporter activity|0015411||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414899.2;locus_tag=AD39_RS21515;product=taurine ABC transporter substrate-binding protein;protein_id=WP_001297135.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 126614 127381 . + . ID=gene-AD39_RS21510;Name=tauB;gbkey=Gene;gene=tauB;gene_biotype=protein_coding;locus_tag=AD39_RS21510;old_locus_tag=AD39_0373 NZ_JJLH01000007.1 Protein Homology CDS 126614 127381 . + 0 ID=cds-WP_003577943.1;Parent=gene-AD39_RS21510;Dbxref=GenBank:WP_003577943.1;Name=WP_003577943.1;Ontology_term=GO:0005524,GO:0015411,GO:0016020;gbkey=CDS;gene=tauB;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type taurine transporter transporter activity|0015411||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414900.1;locus_tag=AD39_RS21510;product=taurine ABC transporter ATP-binding subunit;protein_id=WP_003577943.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 127378 128205 . + . ID=gene-AD39_RS21505;Name=tauC;gbkey=Gene;gene=tauC;gene_biotype=protein_coding;locus_tag=AD39_RS21505;old_locus_tag=AD39_0374 NZ_JJLH01000007.1 Protein Homology CDS 127378 128205 . + 0 ID=cds-WP_001532262.1;Parent=gene-AD39_RS21505;Dbxref=GenBank:WP_001532262.1;Name=WP_001532262.1;Ontology_term=GO:0055085,GO:0015411,GO:0016020;gbkey=CDS;gene=tauC;go_component=membrane|0016020||IEA;go_function=ABC-type taurine transporter transporter activity|0015411||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706205.1;locus_tag=AD39_RS21505;product=taurine ABC transporter permease TauC;protein_id=WP_001532262.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 128202 129053 . + . ID=gene-AD39_RS21500;Name=tauD;gbkey=Gene;gene=tauD;gene_biotype=protein_coding;locus_tag=AD39_RS21500;old_locus_tag=AD39_0375 NZ_JJLH01000007.1 Protein Homology CDS 128202 129053 . + 0 ID=cds-WP_000004027.1;Parent=gene-AD39_RS21500;Dbxref=GenBank:WP_000004027.1;Name=WP_000004027.1;Ontology_term=GO:0016491;gbkey=CDS;gene=tauD;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414902.1;locus_tag=AD39_RS21500;product=taurine dioxygenase;protein_id=WP_000004027.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 129159 130133 . - . ID=gene-AD39_RS21495;Name=hemB;gbkey=Gene;gene=hemB;gene_biotype=protein_coding;locus_tag=AD39_RS21495;old_locus_tag=AD39_0376 NZ_JJLH01000007.1 Protein Homology CDS 129159 130133 . - 0 ID=cds-WP_001295337.1;Parent=gene-AD39_RS21495;Dbxref=GenBank:WP_001295337.1;Name=WP_001295337.1;Ontology_term=GO:0033014,GO:0004655;gbkey=CDS;gene=hemB;go_function=porphobilinogen synthase activity|0004655||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308450.2;locus_tag=AD39_RS21495;product=porphobilinogen synthase;protein_id=WP_001295337.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 130657 133545 . + . ID=gene-AD39_RS0123330;Name=AD39_RS0123330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123330;old_locus_tag=AD39_0378 NZ_JJLH01000007.1 Protein Homology CDS 130657 133545 . + 0 ID=cds-WP_000556545.1;Parent=gene-AD39_RS0123330;Dbxref=GenBank:WP_000556545.1;Name=WP_000556545.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000556408.1;locus_tag=AD39_RS0123330;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_000556545.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 133633 134256 . + . ID=gene-AD39_RS21490;Name=iprA;gbkey=Gene;gene=iprA;gene_biotype=protein_coding;locus_tag=AD39_RS21490;old_locus_tag=AD39_0379 NZ_JJLH01000007.1 Protein Homology CDS 133633 134256 . + 0 ID=cds-WP_001295335.1;Parent=gene-AD39_RS21490;Dbxref=GenBank:WP_001295335.1;Name=WP_001295335.1;gbkey=CDS;gene=iprA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414909.2;locus_tag=AD39_RS21490;product=hydrogen peroxide resistance inhibitor IprA;protein_id=WP_001295335.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 134257 135414 . - . ID=gene-AD39_RS21485;Name=ampH;gbkey=Gene;gene=ampH;gene_biotype=protein_coding;locus_tag=AD39_RS21485;old_locus_tag=AD39_0380 NZ_JJLH01000007.1 Protein Homology CDS 134257 135414 . - 0 ID=cds-WP_000830741.1;Parent=gene-AD39_RS21485;Dbxref=GenBank:WP_000830741.1;Name=WP_000830741.1;gbkey=CDS;gene=ampH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308453.1;locus_tag=AD39_RS21485;product=D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH;protein_id=WP_000830741.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 135766 136986 . + . ID=gene-AD39_RS21475;Name=sbmA;gbkey=Gene;gene=sbmA;gene_biotype=protein_coding;locus_tag=AD39_RS21475;old_locus_tag=AD39_0382 NZ_JJLH01000007.1 Protein Homology CDS 135766 136986 . + 0 ID=cds-WP_000477009.1;Parent=gene-AD39_RS21475;Dbxref=GenBank:WP_000477009.1;Name=WP_000477009.1;Ontology_term=GO:0015833,GO:1904680;gbkey=CDS;gene=sbmA;go_function=peptide transmembrane transporter activity|1904680||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706191.2;locus_tag=AD39_RS21475;product=peptide antibiotic transporter SbmA;protein_id=WP_000477009.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 136999 138093 . + . ID=gene-AD39_RS21470;Name=yaiW;gbkey=Gene;gene=yaiW;gene_biotype=protein_coding;locus_tag=AD39_RS21470;old_locus_tag=AD39_0383 NZ_JJLH01000007.1 Protein Homology CDS 136999 138093 . + 0 ID=cds-WP_000092045.1;Parent=gene-AD39_RS21470;Dbxref=GenBank:WP_000092045.1;Name=WP_000092045.1;gbkey=CDS;gene=yaiW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308455.1;locus_tag=AD39_RS21470;product=surface-exposed outer membrane lipoprotein YaiW;protein_id=WP_000092045.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 138152 138460 . - . ID=gene-AD39_RS21465;Name=yaiY;gbkey=Gene;gene=yaiY;gene_biotype=protein_coding;locus_tag=AD39_RS21465;old_locus_tag=AD39_0384 NZ_JJLH01000007.1 Protein Homology CDS 138152 138460 . - 0 ID=cds-WP_000763151.1;Parent=gene-AD39_RS21465;Dbxref=GenBank:WP_000763151.1;Name=WP_000763151.1;gbkey=CDS;gene=yaiY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308456.1;locus_tag=AD39_RS21465;product=YaiY family protein;protein_id=WP_000763151.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 138720 138932 . + . ID=gene-AD39_RS28840;Name=yaiZ;gbkey=Gene;gene=yaiZ;gene_biotype=protein_coding;locus_tag=AD39_RS28840;old_locus_tag=AD39_0385 NZ_JJLH01000007.1 Protein Homology CDS 138720 138932 . + 0 ID=cds-WP_001295334.1;Parent=gene-AD39_RS28840;Dbxref=GenBank:WP_001295334.1;Name=WP_001295334.1;gbkey=CDS;gene=yaiZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414914.2;locus_tag=AD39_RS28840;product=DUF2754 domain-containing protein;protein_id=WP_001295334.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 138956 140050 . - . ID=gene-AD39_RS21455;Name=ddlA;gbkey=Gene;gene=ddlA;gene_biotype=protein_coding;locus_tag=AD39_RS21455;old_locus_tag=AD39_0386 NZ_JJLH01000007.1 Protein Homology CDS 138956 140050 . - 0 ID=cds-WP_032283021.1;Parent=gene-AD39_RS21455;Dbxref=GenBank:WP_032283021.1;Name=WP_032283021.1;Ontology_term=GO:0008716;gbkey=CDS;gene=ddlA;go_function=D-alanine-D-alanine ligase activity|0008716||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308458.1;locus_tag=AD39_RS21455;product=D-alanine--D-alanine ligase;protein_id=WP_032283021.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 140128 140331 . + . ID=gene-AD39_RS29370;Name=AD39_RS29370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29370;old_locus_tag=AD39_0387 NZ_JJLH01000007.1 Protein Homology CDS 140128 140331 . + 0 ID=cds-WP_001297130.1;Parent=gene-AD39_RS29370;Dbxref=GenBank:WP_001297130.1;Name=WP_001297130.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_008439229.1;locus_tag=AD39_RS29370;product=hypothetical protein;protein_id=WP_001297130.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 140513 140773 . + . ID=gene-AD39_RS21445;Name=iraP;gbkey=Gene;gene=iraP;gene_biotype=protein_coding;locus_tag=AD39_RS21445;old_locus_tag=AD39_0389 NZ_JJLH01000007.1 Protein Homology CDS 140513 140773 . + 0 ID=cds-WP_000792970.1;Parent=gene-AD39_RS21445;Dbxref=GenBank:WP_000792970.1;Name=WP_000792970.1;gbkey=CDS;gene=iraP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308459.1;locus_tag=AD39_RS21445;product=anti-adapter protein IraP;protein_id=WP_000792970.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 140874 142289 . + . ID=gene-AD39_RS21440;Name=phoA;gbkey=Gene;gene=phoA;gene_biotype=protein_coding;locus_tag=AD39_RS21440;old_locus_tag=AD39_0390 NZ_JJLH01000007.1 Protein Homology CDS 140874 142289 . + 0 ID=cds-WP_001367728.1;Parent=gene-AD39_RS21440;Dbxref=GenBank:WP_001367728.1;Name=WP_001367728.1;Ontology_term=GO:0016791;gbkey=CDS;gene=phoA;go_function=phosphatase activity|0016791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414917.2;locus_tag=AD39_RS21440;product=alkaline phosphatase;protein_id=WP_001367728.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 142408 142728 . + . ID=gene-AD39_RS21435;Name=psiF;gbkey=Gene;gene=psiF;gene_biotype=protein_coding;locus_tag=AD39_RS21435;old_locus_tag=AD39_0391 NZ_JJLH01000007.1 Protein Homology CDS 142408 142728 . + 0 ID=cds-WP_001295332.1;Parent=gene-AD39_RS21435;Dbxref=GenBank:WP_001295332.1;Name=WP_001295332.1;gbkey=CDS;gene=psiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414918.4;locus_tag=AD39_RS21435;product=phosphate starvation-inducible protein PsiF;protein_id=WP_001295332.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 142830 143945 . + . ID=gene-AD39_RS21430;Name=adrA;gbkey=Gene;gene=adrA;gene_biotype=protein_coding;gene_synonym=dgcC;locus_tag=AD39_RS21430;old_locus_tag=AD39_0392 NZ_JJLH01000007.1 Protein Homology CDS 142830 143945 . + 0 ID=cds-WP_000484026.1;Parent=gene-AD39_RS21430;Dbxref=GenBank:WP_000484026.1;Name=WP_000484026.1;gbkey=CDS;gene=adrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414919.1;locus_tag=AD39_RS21430;product=diguanylate cyclase AdrA;protein_id=WP_000484026.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 143962 144771 . - . ID=gene-AD39_RS21425;Name=proC;gbkey=Gene;gene=proC;gene_biotype=protein_coding;locus_tag=AD39_RS21425;old_locus_tag=AD39_0393 NZ_JJLH01000007.1 Protein Homology CDS 143962 144771 . - 0 ID=cds-WP_001295331.1;Parent=gene-AD39_RS21425;Dbxref=GenBank:WP_001295331.1;Name=WP_001295331.1;Ontology_term=GO:0006561,GO:0004735;gbkey=CDS;gene=proC;go_function=pyrroline-5-carboxylate reductase activity|0004735||IEA;go_process=proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414920.1;locus_tag=AD39_RS21425;product=pyrroline-5-carboxylate reductase;protein_id=WP_001295331.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 144891 145349 . + . ID=gene-AD39_RS21420;Name=yaiI;gbkey=Gene;gene=yaiI;gene_biotype=protein_coding;locus_tag=AD39_RS21420;old_locus_tag=AD39_0394 NZ_JJLH01000007.1 Protein Homology CDS 144891 145349 . + 0 ID=cds-WP_000158159.1;Parent=gene-AD39_RS21420;Dbxref=GenBank:WP_000158159.1;Name=WP_000158159.1;gbkey=CDS;gene=yaiI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414921.2;locus_tag=AD39_RS21420;product=YaiI/YqxD family protein;protein_id=WP_000158159.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 145532 146056 . + . ID=gene-AD39_RS21415;Name=aroL;gbkey=Gene;gene=aroL;gene_biotype=protein_coding;locus_tag=AD39_RS21415;old_locus_tag=AD39_0395 NZ_JJLH01000007.1 Protein Homology CDS 145532 146056 . + 0 ID=cds-WP_000193393.1;Parent=gene-AD39_RS21415;Dbxref=GenBank:WP_000193393.1;Name=WP_000193393.1;Ontology_term=GO:0009073,GO:0004765;gbkey=CDS;gene=aroL;go_function=shikimate kinase activity|0004765||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308465.1;locus_tag=AD39_RS21415;product=shikimate kinase AroL;protein_id=WP_000193393.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 146106 146297 . + . ID=gene-AD39_RS0123335;Name=yaiA;gbkey=Gene;gene=yaiA;gene_biotype=protein_coding;locus_tag=AD39_RS0123335;old_locus_tag=AD39_0396 NZ_JJLH01000007.1 Protein Homology CDS 146106 146297 . + 0 ID=cds-WP_001142439.1;Parent=gene-AD39_RS0123335;Dbxref=GenBank:WP_001142439.1;Name=WP_001142439.1;gbkey=CDS;gene=yaiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308466.1;locus_tag=AD39_RS0123335;product=protein YaiA;protein_id=WP_001142439.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 146555 147232 . + . ID=gene-AD39_RS21410;Name=aroM;gbkey=Gene;gene=aroM;gene_biotype=protein_coding;locus_tag=AD39_RS21410;old_locus_tag=AD39_0397 NZ_JJLH01000007.1 Protein Homology CDS 146555 147232 . + 0 ID=cds-WP_001276422.1;Parent=gene-AD39_RS21410;Dbxref=GenBank:WP_001276422.1;Name=WP_001276422.1;gbkey=CDS;gene=aroM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414924.1;locus_tag=AD39_RS21410;product=AroM family protein;protein_id=WP_001276422.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 147304 147588 . + . ID=gene-AD39_RS21405;Name=ppnP;gbkey=Gene;gene=ppnP;gene_biotype=protein_coding;locus_tag=AD39_RS21405;old_locus_tag=AD39_0398 NZ_JJLH01000007.1 Protein Homology CDS 147304 147588 . + 0 ID=cds-WP_001396715.1;Parent=gene-AD39_RS21405;Dbxref=GenBank:WP_001396715.1;Name=WP_001396715.1;gbkey=CDS;gene=ppnP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308468.1;locus_tag=AD39_RS21405;product=pyrimidine/purine nucleoside phosphorylase;protein_id=WP_001396715.1;transl_table=11 NZ_JJLH01000007.1 RefSeq pseudogene 147736 148077 . + . ID=gene-AD39_RS0123345;Name=AD39_RS0123345;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0123345;partial=true;pseudo=true;start_range=.,147736 NZ_JJLH01000007.1 Protein Homology CDS 147736 148077 . + 0 ID=cds-AD39_RS0123345;Parent=gene-AD39_RS0123345;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308469.2;locus_tag=AD39_RS0123345;partial=true;product=DUF2773 domain-containing protein;pseudo=true;start_range=.,147736;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 148074 148157 . + . ID=gene-AD39_RS28845;Name=AD39_RS28845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28845 NZ_JJLH01000007.1 Protein Homology CDS 148074 148157 . + 0 ID=cds-WP_122367828.1;Parent=gene-AD39_RS28845;Dbxref=GenBank:WP_122367828.1;Name=WP_122367828.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518750.1;locus_tag=AD39_RS28845;product=hypothetical protein;protein_id=WP_122367828.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 148235 149146 . - . ID=gene-AD39_RS21400;Name=rdgC;gbkey=Gene;gene=rdgC;gene_biotype=protein_coding;locus_tag=AD39_RS21400;old_locus_tag=AD39_0400 NZ_JJLH01000007.1 Protein Homology CDS 148235 149146 . - 0 ID=cds-WP_001298537.1;Parent=gene-AD39_RS21400;Dbxref=GenBank:WP_001298537.1;Name=WP_001298537.1;Ontology_term=GO:0006310;gbkey=CDS;gene=rdgC;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120935.1;locus_tag=AD39_RS21400;product=recombination-associated protein RdgC;protein_id=WP_001298537.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 149271 150179 . + . ID=gene-AD39_RS21395;Name=mak;gbkey=Gene;gene=mak;gene_biotype=protein_coding;locus_tag=AD39_RS21395;old_locus_tag=AD39_0401 NZ_JJLH01000007.1 Protein Homology CDS 149271 150179 . + 0 ID=cds-WP_001219320.1;Parent=gene-AD39_RS21395;Dbxref=GenBank:WP_001219320.1;Name=WP_001219320.1;gbkey=CDS;gene=mak;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414928.2;locus_tag=AD39_RS21395;product=fructokinase;protein_id=WP_001219320.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 150322 151506 . - . ID=gene-AD39_RS21390;Name=araJ;gbkey=Gene;gene=araJ;gene_biotype=protein_coding;locus_tag=AD39_RS21390;old_locus_tag=AD39_0402 NZ_JJLH01000007.1 Protein Homology CDS 150322 151506 . - 0 ID=cds-WP_001345723.1;Parent=gene-AD39_RS21390;Dbxref=GenBank:WP_001345723.1;Name=WP_001345723.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=araJ;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414930.3;locus_tag=AD39_RS21390;product=MFS transporter AraJ;protein_id=WP_001345723.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 151632 154775 . - . ID=gene-AD39_RS21385;Name=sbcC;gbkey=Gene;gene=sbcC;gene_biotype=protein_coding;locus_tag=AD39_RS21385;old_locus_tag=AD39_0403 NZ_JJLH01000007.1 Protein Homology CDS 151632 154775 . - 0 ID=cds-WP_000698883.1;Parent=gene-AD39_RS21385;Dbxref=GenBank:WP_000698883.1;Name=WP_000698883.1;Ontology_term=GO:0006260,GO:0004527;gbkey=CDS;gene=sbcC;go_function=exonuclease activity|0004527||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308474.2;locus_tag=AD39_RS21385;product=exonuclease subunit SbcC;protein_id=WP_000698883.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 154772 155974 . - . ID=gene-AD39_RS21380;Name=sbcD;gbkey=Gene;gene=sbcD;gene_biotype=protein_coding;locus_tag=AD39_RS21380;old_locus_tag=AD39_0404 NZ_JJLH01000007.1 Protein Homology CDS 154772 155974 . - 0 ID=cds-WP_001221319.1;Parent=gene-AD39_RS21380;Dbxref=GenBank:WP_001221319.1;Name=WP_001221319.1;Ontology_term=GO:0006260,GO:0006310,GO:0004527;gbkey=CDS;gene=sbcD;go_function=exonuclease activity|0004527||IEA;go_process=DNA replication|0006260||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308475.1;locus_tag=AD39_RS21380;product=exonuclease subunit SbcD;protein_id=WP_001221319.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 156164 156853 . + . ID=gene-AD39_RS21375;Name=phoB;gbkey=Gene;gene=phoB;gene_biotype=protein_coding;locus_tag=AD39_RS21375;old_locus_tag=AD39_0405 NZ_JJLH01000007.1 Protein Homology CDS 156164 156853 . + 0 ID=cds-WP_000113933.1;Parent=gene-AD39_RS21375;Dbxref=GenBank:WP_000113933.1;Name=WP_000113933.1;gbkey=CDS;gene=phoB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000113934.1;locus_tag=AD39_RS21375;product=phosphate response regulator transcription factor PhoB;protein_id=WP_000113933.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 156911 158206 . + . ID=gene-AD39_RS21370;Name=phoR;gbkey=Gene;gene=phoR;gene_biotype=protein_coding;locus_tag=AD39_RS21370;old_locus_tag=AD39_0406 NZ_JJLH01000007.1 Protein Homology CDS 156911 158206 . + 0 ID=cds-WP_003903074.1;Parent=gene-AD39_RS21370;Dbxref=GenBank:WP_003903074.1;Name=WP_003903074.1;Ontology_term=GO:0000160,GO:0006355,GO:0016310,GO:0000155,GO:0004721,GO:0016020;gbkey=CDS;gene=phoR;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,phosphoprotein phosphatase activity|0004721||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414934.1;locus_tag=AD39_RS21370;product=phosphate regulon sensor histidine kinase PhoR;protein_id=WP_003903074.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 158613 159932 . + . ID=gene-AD39_RS21365;Name=brnQ;gbkey=Gene;gene=brnQ;gene_biotype=protein_coding;locus_tag=AD39_RS21365;old_locus_tag=AD39_0408 NZ_JJLH01000007.1 Protein Homology CDS 158613 159932 . + 0 ID=cds-WP_000149639.1;Parent=gene-AD39_RS21365;Dbxref=GenBank:WP_000149639.1;Name=WP_000149639.1;gbkey=CDS;gene=brnQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308478.1;locus_tag=AD39_RS21365;product=branched-chain amino acid transporter carrier protein BrnQ;protein_id=WP_000149639.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 160008 161381 . + . ID=gene-AD39_RS21360;Name=proY;gbkey=Gene;gene=proY;gene_biotype=protein_coding;locus_tag=AD39_RS21360;old_locus_tag=AD39_0409 NZ_JJLH01000007.1 Protein Homology CDS 160008 161381 . + 0 ID=cds-WP_024167973.1;Parent=gene-AD39_RS21360;Dbxref=GenBank:WP_024167973.1;Name=WP_024167973.1;Ontology_term=GO:0006865,GO:0055085,GO:0016020;gbkey=CDS;gene=proY;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308479.1;locus_tag=AD39_RS21360;product=proline-specific permease ProY;protein_id=WP_024167973.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 161537 163354 . + . ID=gene-AD39_RS21355;Name=malZ;gbkey=Gene;gene=malZ;gene_biotype=protein_coding;locus_tag=AD39_RS21355;old_locus_tag=AD39_0410 NZ_JJLH01000007.1 Protein Homology CDS 161537 163354 . + 0 ID=cds-WP_001366090.1;Parent=gene-AD39_RS21355;Dbxref=GenBank:WP_001366090.1;Name=WP_001366090.1;Ontology_term=GO:0005975,GO:0004558;gbkey=CDS;gene=malZ;go_function=alpha-1%2C4-glucosidase activity|0004558||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706291.1;locus_tag=AD39_RS21355;product=maltodextrin glucosidase;protein_id=WP_001366090.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 163359 163940 . - . ID=gene-AD39_RS21350;Name=acpH;gbkey=Gene;gene=acpH;gene_biotype=protein_coding;locus_tag=AD39_RS21350;old_locus_tag=AD39_0411 NZ_JJLH01000007.1 Protein Homology CDS 163359 163940 . - 0 ID=cds-WP_001009884.1;Parent=gene-AD39_RS21350;Dbxref=GenBank:WP_001009884.1;Name=WP_001009884.1;Ontology_term=GO:0006633,GO:0008770;gbkey=CDS;gene=acpH;go_function=[acyl-carrier-protein] phosphodiesterase activity|0008770||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414938.1;locus_tag=AD39_RS21350;product=ACP phosphodiesterase;protein_id=WP_001009884.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 164033 165103 . + . ID=gene-AD39_RS21345;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=AD39_RS21345;old_locus_tag=AD39_0412 NZ_JJLH01000007.1 Protein Homology CDS 164033 165103 . + 0 ID=cds-WP_001266492.1;Parent=gene-AD39_RS21345;Dbxref=GenBank:WP_001266492.1;Name=WP_001266492.1;Ontology_term=GO:0006400,GO:0008616,GO:0051075,GO:0005737;gbkey=CDS;gene=queA;go_component=cytoplasm|0005737||IEA;go_function=S-adenosylmethionine:tRNA ribosyltransferase-isomerase activity|0051075||IEA;go_process=tRNA modification|0006400||IEA,queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308483.1;locus_tag=AD39_RS21345;product=tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA;protein_id=WP_001266492.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 165159 166286 . + . ID=gene-AD39_RS21340;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=AD39_RS21340;old_locus_tag=AD39_0413 NZ_JJLH01000007.1 Protein Homology CDS 165159 166286 . + 0 ID=cds-WP_000667319.1;Parent=gene-AD39_RS21340;Dbxref=GenBank:WP_000667319.1;Name=WP_000667319.1;Ontology_term=GO:0006400,GO:0008479,GO:0005737;gbkey=CDS;gene=tgt;go_component=cytoplasm|0005737||IEA;go_function=tRNA-guanosine(34) queuine transglycosylase activity|0008479||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904808.1;locus_tag=AD39_RS21340;product=tRNA guanosine(34) transglycosylase Tgt;protein_id=WP_000667319.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 166309 166641 . + . ID=gene-AD39_RS21335;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=AD39_RS21335;old_locus_tag=AD39_0414 NZ_JJLH01000007.1 Protein Homology CDS 166309 166641 . + 0 ID=cds-WP_000007625.1;Parent=gene-AD39_RS21335;Dbxref=GenBank:WP_000007625.1;Name=WP_000007625.1;Ontology_term=GO:0009306,GO:0015450,GO:0005886;gbkey=CDS;gene=yajC;go_component=plasma membrane|0005886||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000007628.1;locus_tag=AD39_RS21335;product=preprotein translocase subunit YajC;protein_id=WP_000007625.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 166669 168516 . + . ID=gene-AD39_RS21330;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=AD39_RS21330;old_locus_tag=AD39_0415 NZ_JJLH01000007.1 Protein Homology CDS 166669 168516 . + 0 ID=cds-WP_000934822.1;Parent=gene-AD39_RS21330;Dbxref=GenBank:WP_000934822.1;Name=WP_000934822.1;Ontology_term=GO:0006886,GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secD;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=intracellular protein transport|0006886||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125127.1;locus_tag=AD39_RS21330;product=protein translocase subunit SecD;protein_id=WP_000934822.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 168527 169498 . + . ID=gene-AD39_RS21325;Name=secF;gbkey=Gene;gene=secF;gene_biotype=protein_coding;locus_tag=AD39_RS21325;old_locus_tag=AD39_0416 NZ_JJLH01000007.1 Protein Homology CDS 168527 169498 . + 0 ID=cds-WP_000046637.1;Parent=gene-AD39_RS21325;Dbxref=GenBank:WP_000046637.1;Name=WP_000046637.1;Ontology_term=GO:0006886,GO:0043952,GO:0015450,GO:0031522;gbkey=CDS;gene=secF;go_component=cell envelope Sec protein transport complex|0031522||IEA;go_function=protein-transporting ATPase activity|0015450||IEA;go_process=intracellular protein transport|0006886||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308487.1;locus_tag=AD39_RS21325;product=protein translocase subunit SecF;protein_id=WP_000046637.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 169627 169974 . + . ID=gene-AD39_RS21320;Name=yajD;gbkey=Gene;gene=yajD;gene_biotype=protein_coding;locus_tag=AD39_RS21320;old_locus_tag=AD39_0417 NZ_JJLH01000007.1 Protein Homology CDS 169627 169974 . + 0 ID=cds-WP_000974813.1;Parent=gene-AD39_RS21320;Dbxref=GenBank:WP_000974813.1;Name=WP_000974813.1;gbkey=CDS;gene=yajD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308490.1;locus_tag=AD39_RS21320;product=HNH nuclease YajD;protein_id=WP_000974813.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 170151 171035 . - . ID=gene-AD39_RS21315;Name=tsx;gbkey=Gene;gene=tsx;gene_biotype=protein_coding;locus_tag=AD39_RS21315;old_locus_tag=AD39_0418 NZ_JJLH01000007.1 Protein Homology CDS 170151 171035 . - 0 ID=cds-WP_032283023.1;Parent=gene-AD39_RS21315;Dbxref=GenBank:WP_032283023.1;Name=WP_032283023.1;gbkey=CDS;gene=tsx;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308491.1;locus_tag=AD39_RS21315;product=nucleoside-specific channel-forming protein Tsx;protein_id=WP_032283023.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 171334 171873 . - . ID=gene-AD39_RS21310;Name=yajI;gbkey=Gene;gene=yajI;gene_biotype=protein_coding;locus_tag=AD39_RS21310;old_locus_tag=AD39_0419 NZ_JJLH01000007.1 Protein Homology CDS 171334 171873 . - 0 ID=cds-WP_001295327.1;Parent=gene-AD39_RS21310;Dbxref=GenBank:WP_001295327.1;Name=WP_001295327.1;gbkey=CDS;gene=yajI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414946.4;locus_tag=AD39_RS21310;product=DUF3251 domain-containing protein;protein_id=WP_001295327.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 172024 172473 . + . ID=gene-AD39_RS21305;Name=nrdR;gbkey=Gene;gene=nrdR;gene_biotype=protein_coding;locus_tag=AD39_RS21305;old_locus_tag=AD39_0420 NZ_JJLH01000007.1 Protein Homology CDS 172024 172473 . + 0 ID=cds-WP_000543535.1;Parent=gene-AD39_RS21305;Dbxref=GenBank:WP_000543535.1;Name=WP_000543535.1;Ontology_term=GO:0006355,GO:0008270,GO:0140110;gbkey=CDS;gene=nrdR;go_function=zinc ion binding|0008270||IEA,transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017458860.1;locus_tag=AD39_RS21305;product=transcriptional regulator NrdR;protein_id=WP_000543535.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 172477 173580 . + . ID=gene-AD39_RS21300;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;locus_tag=AD39_RS21300;old_locus_tag=AD39_0421 NZ_JJLH01000007.1 Protein Homology CDS 172477 173580 . + 0 ID=cds-WP_032287487.1;Parent=gene-AD39_RS21300;Dbxref=GenBank:WP_032287487.1;Name=WP_032287487.1;Ontology_term=GO:0008270,GO:0008703,GO:0008835,GO:0050661;gbkey=CDS;gene=ribD;go_function=zinc ion binding|0008270||IEA,5-amino-6-(5-phosphoribosylamino)uracil reductase activity|0008703||IEA,diaminohydroxyphosphoribosylaminopyrimidine deaminase activity|0008835||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706302.1;locus_tag=AD39_RS21300;product=bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD;protein_id=WP_032287487.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 173669 174139 . + . ID=gene-AD39_RS21295;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;locus_tag=AD39_RS21295;old_locus_tag=AD39_0422 NZ_JJLH01000007.1 Protein Homology CDS 173669 174139 . + 0 ID=cds-WP_001021161.1;Parent=gene-AD39_RS21295;Dbxref=GenBank:WP_001021161.1;Name=WP_001021161.1;Ontology_term=GO:0000906,GO:0009349;gbkey=CDS;gene=ribH;go_component=riboflavin synthase complex|0009349||IEA;go_function=6%2C7-dimethyl-8-ribityllumazine synthase activity|0000906||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006818760.1;locus_tag=AD39_RS21295;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=WP_001021161.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 174159 174578 . + . ID=gene-AD39_RS21290;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=AD39_RS21290;old_locus_tag=AD39_0423 NZ_JJLH01000007.1 Protein Homology CDS 174159 174578 . + 0 ID=cds-WP_000801125.1;Parent=gene-AD39_RS21290;Dbxref=GenBank:WP_000801125.1;Name=WP_000801125.1;Ontology_term=GO:0006353;gbkey=CDS;gene=nusB;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308496.1;locus_tag=AD39_RS21290;product=transcription antitermination factor NusB;protein_id=WP_000801125.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 174656 175633 . + . ID=gene-AD39_RS21285;Name=thiL;gbkey=Gene;gene=thiL;gene_biotype=protein_coding;locus_tag=AD39_RS21285;old_locus_tag=AD39_0424 NZ_JJLH01000007.1 Protein Homology CDS 174656 175633 . + 0 ID=cds-WP_000742090.1;Parent=gene-AD39_RS21285;Dbxref=GenBank:WP_000742090.1;Name=WP_000742090.1;Ontology_term=GO:0009228,GO:0009030;gbkey=CDS;gene=thiL;go_function=thiamine-phosphate kinase activity|0009030||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414951.1;locus_tag=AD39_RS21285;product=thiamine-phosphate kinase;protein_id=WP_000742090.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 175611 176129 . + . ID=gene-AD39_RS21280;Name=pgpA;gbkey=Gene;gene=pgpA;gene_biotype=protein_coding;locus_tag=AD39_RS21280;old_locus_tag=AD39_0425 NZ_JJLH01000007.1 Protein Homology CDS 175611 176129 . + 0 ID=cds-WP_000154044.1;Parent=gene-AD39_RS21280;Dbxref=GenBank:WP_000154044.1;Name=WP_000154044.1;Ontology_term=GO:0006629,GO:0008962;gbkey=CDS;gene=pgpA;go_function=phosphatidylglycerophosphatase activity|0008962||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414952.1;locus_tag=AD39_RS21280;product=phosphatidylglycerophosphatase A;protein_id=WP_000154044.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 176183 177157 . - . ID=gene-AD39_RS21275;Name=yajO;gbkey=Gene;gene=yajO;gene_biotype=protein_coding;locus_tag=AD39_RS21275;old_locus_tag=AD39_0426 NZ_JJLH01000007.1 Protein Homology CDS 176183 177157 . - 0 ID=cds-WP_001199800.1;Parent=gene-AD39_RS21275;Dbxref=GenBank:WP_001199800.1;Name=WP_001199800.1;gbkey=CDS;gene=yajO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414953.2;locus_tag=AD39_RS21275;product=1-deoxyxylulose-5-phosphate synthase YajO;protein_id=WP_001199800.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 177337 179199 . - . ID=gene-AD39_RS21270;Name=dxs;gbkey=Gene;gene=dxs;gene_biotype=protein_coding;locus_tag=AD39_RS21270;old_locus_tag=AD39_0427 NZ_JJLH01000007.1 Protein Homology CDS 177337 179199 . - 0 ID=cds-WP_032287488.1;Parent=gene-AD39_RS21270;Dbxref=GenBank:WP_032287488.1;Name=WP_032287488.1;Ontology_term=GO:0008615,GO:0009228,GO:0009240,GO:0008661,GO:0005737;gbkey=CDS;gene=dxs;go_component=cytoplasm|0005737||IEA;go_function=1-deoxy-D-xylulose-5-phosphate synthase activity|0008661||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA,thiamine biosynthetic process|0009228||IEA,isopentenyl diphosphate biosynthetic process|0009240||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308501.1;locus_tag=AD39_RS21270;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=WP_032287488.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 179224 180123 . - . ID=gene-AD39_RS21265;Name=ispA;gbkey=Gene;gene=ispA;gene_biotype=protein_coding;locus_tag=AD39_RS21265;old_locus_tag=AD39_0428 NZ_JJLH01000007.1 Protein Homology CDS 179224 180123 . - 0 ID=cds-WP_000347235.1;Parent=gene-AD39_RS21265;Dbxref=GenBank:WP_000347235.1;Name=WP_000347235.1;Ontology_term=GO:0008299;gbkey=CDS;gene=ispA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414955.1;locus_tag=AD39_RS21265;product=(2E%2C6E)-farnesyl diphosphate synthase;protein_id=WP_000347235.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 180123 180365 . - . ID=gene-AD39_RS21260;Name=xseB;gbkey=Gene;gene=xseB;gene_biotype=protein_coding;locus_tag=AD39_RS21260;old_locus_tag=AD39_0429 NZ_JJLH01000007.1 Protein Homology CDS 180123 180365 . - 0 ID=cds-WP_001124935.1;Parent=gene-AD39_RS21260;Dbxref=GenBank:WP_001124935.1;Name=WP_001124935.1;gbkey=CDS;gene=xseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308503.1;locus_tag=AD39_RS21260;product=exodeoxyribonuclease VII small subunit;protein_id=WP_001124935.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 180571 182019 . + . ID=gene-AD39_RS21255;Name=thiI;gbkey=Gene;gene=thiI;gene_biotype=protein_coding;locus_tag=AD39_RS21255;old_locus_tag=AD39_0431 NZ_JJLH01000007.1 Protein Homology CDS 180571 182019 . + 0 ID=cds-WP_000668685.1;Parent=gene-AD39_RS21255;Dbxref=GenBank:WP_000668685.1;Name=WP_000668685.1;Ontology_term=GO:0006400,GO:0009228,GO:0140741;gbkey=CDS;gene=thiI;go_function=tRNA-uracil-4 sulfurtransferase activity|0140741||IEA;go_process=tRNA modification|0006400||IEA,thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014168857.1;locus_tag=AD39_RS21255;product=tRNA uracil 4-sulfurtransferase ThiI;protein_id=WP_000668685.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 182073 182663 . - . ID=gene-AD39_RS21250;Name=yajL;gbkey=Gene;gene=yajL;gene_biotype=protein_coding;locus_tag=AD39_RS21250;old_locus_tag=AD39_0432 NZ_JJLH01000007.1 Protein Homology CDS 182073 182663 . - 0 ID=cds-WP_001276299.1;Parent=gene-AD39_RS21250;Dbxref=GenBank:WP_001276299.1;Name=WP_001276299.1;gbkey=CDS;gene=yajL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308505.2;locus_tag=AD39_RS21250;product=protein deglycase YajL;protein_id=WP_001276299.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 182626 183537 . - . ID=gene-AD39_RS21245;Name=panE;gbkey=Gene;gene=panE;gene_biotype=protein_coding;locus_tag=AD39_RS21245;old_locus_tag=AD39_0433 NZ_JJLH01000007.1 Protein Homology CDS 182626 183537 . - 0 ID=cds-WP_000705865.1;Parent=gene-AD39_RS21245;Dbxref=GenBank:WP_000705865.1;Name=WP_000705865.1;Ontology_term=GO:0015940,GO:0008677;gbkey=CDS;gene=panE;go_function=2-dehydropantoate 2-reductase activity|0008677||IEA;go_process=pantothenate biosynthetic process|0015940||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414959.1;locus_tag=AD39_RS21245;product=2-dehydropantoate 2-reductase;protein_id=WP_000705865.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 183705 184196 . + . ID=gene-AD39_RS21240;Name=yajQ;gbkey=Gene;gene=yajQ;gene_biotype=protein_coding;locus_tag=AD39_RS21240;old_locus_tag=AD39_0434 NZ_JJLH01000007.1 Protein Homology CDS 183705 184196 . + 0 ID=cds-WP_001138904.1;Parent=gene-AD39_RS21240;Dbxref=GenBank:WP_001138904.1;Name=WP_001138904.1;gbkey=CDS;gene=yajQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414960.2;locus_tag=AD39_RS21240;product=nucleotide binding protein YajQ;protein_id=WP_001138904.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 184324 185688 . - . ID=gene-AD39_RS21235;Name=yajR;gbkey=Gene;gene=yajR;gene_biotype=protein_coding;locus_tag=AD39_RS21235;old_locus_tag=AD39_0435 NZ_JJLH01000007.1 Protein Homology CDS 184324 185688 . - 0 ID=cds-WP_023155686.1;Parent=gene-AD39_RS21235;Dbxref=GenBank:WP_023155686.1;Name=WP_023155686.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yajR;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308508.2;locus_tag=AD39_RS21235;product=MFS transporter;protein_id=WP_023155686.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 185837 186727 . - . ID=gene-AD39_RS21230;Name=cyoE;gbkey=Gene;gene=cyoE;gene_biotype=protein_coding;locus_tag=AD39_RS21230;old_locus_tag=AD39_0436 NZ_JJLH01000007.1 Protein Homology CDS 185837 186727 . - 0 ID=cds-WP_000971336.1;Parent=gene-AD39_RS21230;Dbxref=GenBank:WP_000971336.1;Name=WP_000971336.1;Ontology_term=GO:0048034,GO:0008495,GO:0016020;gbkey=CDS;gene=cyoE;go_component=membrane|0016020||IEA;go_function=protoheme IX farnesyltransferase activity|0008495||IEA;go_process=heme O biosynthetic process|0048034||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308509.1;locus_tag=AD39_RS21230;product=heme o synthase;protein_id=WP_000971336.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 186739 187068 . - . ID=gene-AD39_RS21225;Name=cyoD;gbkey=Gene;gene=cyoD;gene_biotype=protein_coding;locus_tag=AD39_RS21225;old_locus_tag=AD39_0437 NZ_JJLH01000007.1 Protein Homology CDS 186739 187068 . - 0 ID=cds-WP_000019869.1;Parent=gene-AD39_RS21225;Dbxref=GenBank:WP_000019869.1;Name=WP_000019869.1;gbkey=CDS;gene=cyoD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308510.1;locus_tag=AD39_RS21225;product=cytochrome o ubiquinol oxidase subunit IV;protein_id=WP_000019869.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 187068 187682 . - . ID=gene-AD39_RS21220;Name=cyoC;gbkey=Gene;gene=cyoC;gene_biotype=protein_coding;locus_tag=AD39_RS21220;old_locus_tag=AD39_0438 NZ_JJLH01000007.1 Protein Homology CDS 187068 187682 . - 0 ID=cds-WP_000179819.1;Parent=gene-AD39_RS21220;Dbxref=GenBank:WP_000179819.1;Name=WP_000179819.1;Ontology_term=GO:0022904,GO:0004129;gbkey=CDS;gene=cyoC;go_function=cytochrome-c oxidase activity|0004129||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414964.1;locus_tag=AD39_RS21220;product=cytochrome o ubiquinol oxidase subunit III;protein_id=WP_000179819.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 187672 189663 . - . ID=gene-AD39_RS21215;Name=cyoB;gbkey=Gene;gene=cyoB;gene_biotype=protein_coding;locus_tag=AD39_RS21215;old_locus_tag=AD39_0439 NZ_JJLH01000007.1 Protein Homology CDS 187672 189663 . - 0 ID=cds-WP_000467180.1;Parent=gene-AD39_RS21215;Dbxref=GenBank:WP_000467180.1;Name=WP_000467180.1;Ontology_term=GO:0004129;gbkey=CDS;gene=cyoB;go_function=cytochrome-c oxidase activity|0004129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002444673.1;locus_tag=AD39_RS21215;product=cytochrome o ubiquinol oxidase subunit I;protein_id=WP_000467180.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 189685 190632 . - . ID=gene-AD39_RS21210;Name=cyoA;gbkey=Gene;gene=cyoA;gene_biotype=protein_coding;locus_tag=AD39_RS21210;old_locus_tag=AD39_0440 NZ_JJLH01000007.1 Protein Homology CDS 189685 190632 . - 0 ID=cds-WP_001239441.1;Parent=gene-AD39_RS21210;Dbxref=GenBank:WP_001239441.1;Name=WP_001239441.1;Ontology_term=GO:0022900,GO:0004129;gbkey=CDS;gene=cyoA;go_function=cytochrome-c oxidase activity|0004129||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414966.1;locus_tag=AD39_RS21210;product=cytochrome o ubiquinol oxidase subunit II;protein_id=WP_001239441.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 191092 192567 . - . ID=gene-AD39_RS21205;Name=ampG;gbkey=Gene;gene=ampG;gene_biotype=protein_coding;locus_tag=AD39_RS21205;old_locus_tag=AD39_0441 NZ_JJLH01000007.1 Protein Homology CDS 191092 192567 . - 0 ID=cds-WP_000098438.1;Parent=gene-AD39_RS21205;Dbxref=GenBank:WP_000098438.1;Name=WP_000098438.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=ampG;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706326.1;locus_tag=AD39_RS21205;product=muropeptide MFS transporter AmpG;protein_id=WP_000098438.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 192611 193189 . - . ID=gene-AD39_RS21200;Name=yajG;gbkey=Gene;gene=yajG;gene_biotype=protein_coding;locus_tag=AD39_RS21200;old_locus_tag=AD39_0442 NZ_JJLH01000007.1 Protein Homology CDS 192611 193189 . - 0 ID=cds-WP_001295326.1;Parent=gene-AD39_RS21200;Dbxref=GenBank:WP_001295326.1;Name=WP_001295326.1;gbkey=CDS;gene=yajG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414968.4;locus_tag=AD39_RS21200;product=lipoprotein;protein_id=WP_001295326.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 193494 193811 . + . ID=gene-AD39_RS21195;Name=bolA;gbkey=Gene;gene=bolA;gene_biotype=protein_coding;locus_tag=AD39_RS21195;old_locus_tag=AD39_0443 NZ_JJLH01000007.1 Protein Homology CDS 193494 193811 . + 0 ID=cds-WP_000973448.1;Parent=gene-AD39_RS21195;Dbxref=GenBank:WP_000973448.1;Name=WP_000973448.1;gbkey=CDS;gene=bolA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414969.4;locus_tag=AD39_RS21195;product=transcriptional regulator BolA;protein_id=WP_000973448.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 194155 195453 . + . ID=gene-AD39_RS21185;Name=tig;gbkey=Gene;gene=tig;gene_biotype=protein_coding;locus_tag=AD39_RS21185;old_locus_tag=AD39_0445 NZ_JJLH01000007.1 Protein Homology CDS 194155 195453 . + 0 ID=cds-WP_001198386.1;Parent=gene-AD39_RS21185;Dbxref=GenBank:WP_001198386.1;Name=WP_001198386.1;Ontology_term=GO:0015031,GO:0051083,GO:0003755,GO:0051082,GO:0005854;gbkey=CDS;gene=tig;go_component=nascent polypeptide-associated complex|0005854||IEA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA,unfolded protein binding|0051082||IEA;go_process=protein transport|0015031||IEA,'de novo' cotranslational protein folding|0051083||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001716227.1;locus_tag=AD39_RS21185;product=trigger factor;protein_id=WP_001198386.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 195699 196322 . + . ID=gene-AD39_RS21180;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;locus_tag=AD39_RS21180;old_locus_tag=AD39_0446 NZ_JJLH01000007.1 Protein Homology CDS 195699 196322 . + 0 ID=cds-WP_000122253.1;Parent=gene-AD39_RS21180;Dbxref=GenBank:WP_000122253.1;Name=WP_000122253.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0009368;gbkey=CDS;gene=clpP;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006809880.1;locus_tag=AD39_RS21180;product=ATP-dependent Clp endopeptidase proteolytic subunit ClpP;protein_id=WP_000122253.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 196448 197722 . + . ID=gene-AD39_RS21175;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=AD39_RS21175;old_locus_tag=AD39_0447 NZ_JJLH01000007.1 Protein Homology CDS 196448 197722 . + 0 ID=cds-WP_000130305.1;Parent=gene-AD39_RS21175;Dbxref=GenBank:WP_000130305.1;Name=WP_000130305.1;Ontology_term=GO:0005524,GO:0051082,GO:0140662,GO:0009368;gbkey=CDS;gene=clpX;go_component=endopeptidase Clp complex|0009368||IEA;go_function=ATP binding|0005524||IEA,unfolded protein binding|0051082||IEA,ATP-dependent protein folding chaperone|0140662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001396736.1;locus_tag=AD39_RS21175;product=ATP-dependent protease ATP-binding subunit ClpX;protein_id=WP_000130305.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 197910 200264 . + . ID=gene-AD39_RS21170;Name=lon;gbkey=Gene;gene=lon;gene_biotype=protein_coding;locus_tag=AD39_RS21170;old_locus_tag=AD39_0448 NZ_JJLH01000007.1 Protein Homology CDS 197910 200264 . + 0 ID=cds-WP_001295325.1;Parent=gene-AD39_RS21170;Dbxref=GenBank:WP_001295325.1;Name=WP_001295325.1;Ontology_term=GO:0006508,GO:0004176,GO:0004252,GO:0016887,GO:0043565;gbkey=CDS;gene=lon;go_function=ATP-dependent peptidase activity|0004176||IEA,serine-type endopeptidase activity|0004252||IEA,ATP hydrolysis activity|0016887||IEA,sequence-specific DNA binding|0043565||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001469947.1;locus_tag=AD39_RS21170;product=endopeptidase La;protein_id=WP_001295325.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 200455 200745 . + . ID=gene-AD39_RS21165;Name=hupB;gbkey=Gene;gene=hupB;gene_biotype=protein_coding;locus_tag=AD39_RS21165;old_locus_tag=AD39_0449 NZ_JJLH01000007.1 Protein Homology CDS 200455 200745 . + 0 ID=cds-WP_254892905.1;Parent=gene-AD39_RS21165;Dbxref=GenBank:WP_254892905.1;Name=WP_254892905.1;gbkey=CDS;gene=hupB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013356995.1;locus_tag=AD39_RS21165;product=nucleoid-associated protein HU-beta;protein_id=WP_254892905.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 200937 202808 . + . ID=gene-AD39_RS21160;Name=ppiD;gbkey=Gene;gene=ppiD;gene_biotype=protein_coding;locus_tag=AD39_RS21160;old_locus_tag=AD39_0450 NZ_JJLH01000007.1 Protein Homology CDS 200937 202808 . + 0 ID=cds-WP_000969372.1;Parent=gene-AD39_RS21160;Dbxref=GenBank:WP_000969372.1;Name=WP_000969372.1;Ontology_term=GO:0003755;gbkey=CDS;gene=ppiD;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414975.1;locus_tag=AD39_RS21160;product=peptidylprolyl isomerase;protein_id=WP_000969372.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 202959 203330 . + . ID=gene-AD39_RS21155;Name=ybaV;gbkey=Gene;gene=ybaV;gene_biotype=protein_coding;locus_tag=AD39_RS21155;old_locus_tag=AD39_0451 NZ_JJLH01000007.1 Protein Homology CDS 202959 203330 . + 0 ID=cds-WP_000680294.1;Parent=gene-AD39_RS21155;Dbxref=GenBank:WP_000680294.1;Name=WP_000680294.1;gbkey=CDS;gene=ybaV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414976.1;locus_tag=AD39_RS21155;product=helix-hairpin-helix domain-containing protein;protein_id=WP_000680294.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 203436 203834 . + . ID=gene-AD39_RS21150;Name=fadM;gbkey=Gene;gene=fadM;gene_biotype=protein_coding;locus_tag=AD39_RS21150;old_locus_tag=AD39_0452 NZ_JJLH01000007.1 Protein Homology CDS 203436 203834 . + 0 ID=cds-WP_023155687.1;Parent=gene-AD39_RS21150;Dbxref=GenBank:WP_023155687.1;Name=WP_023155687.1;gbkey=CDS;gene=fadM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414977.1;locus_tag=AD39_RS21150;product=long-chain acyl-CoA thioesterase FadM;protein_id=WP_023155687.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 203886 204581 . - . ID=gene-AD39_RS21145;Name=queC;gbkey=Gene;gene=queC;gene_biotype=protein_coding;locus_tag=AD39_RS21145;old_locus_tag=AD39_0453 NZ_JJLH01000007.1 Protein Homology CDS 203886 204581 . - 0 ID=cds-WP_000817227.1;Parent=gene-AD39_RS21145;Dbxref=GenBank:WP_000817227.1;Name=WP_000817227.1;gbkey=CDS;gene=queC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308525.1;locus_tag=AD39_RS21145;product=7-cyano-7-deazaguanine synthase QueC;protein_id=WP_000817227.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 204646 206346 . - . ID=gene-AD39_RS21140;Name=ybaE;gbkey=Gene;gene=ybaE;gene_biotype=protein_coding;locus_tag=AD39_RS21140;old_locus_tag=AD39_0454 NZ_JJLH01000007.1 Protein Homology CDS 204646 206346 . - 0 ID=cds-WP_001238190.1;Parent=gene-AD39_RS21140;Dbxref=GenBank:WP_001238190.1;Name=WP_001238190.1;gbkey=CDS;gene=ybaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308526.1;locus_tag=AD39_RS21140;product=SgrR family transcriptional regulator;protein_id=WP_001238190.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 206446 207264 . + . ID=gene-AD39_RS21135;Name=cof;gbkey=Gene;gene=cof;gene_biotype=protein_coding;locus_tag=AD39_RS21135;old_locus_tag=AD39_0455 NZ_JJLH01000007.1 Protein Homology CDS 206446 207264 . + 0 ID=cds-WP_000113027.1;Parent=gene-AD39_RS21135;Dbxref=GenBank:WP_000113027.1;Name=WP_000113027.1;Ontology_term=GO:0016818;gbkey=CDS;gene=cof;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414980.2;locus_tag=AD39_RS21135;product=HMP-PP phosphatase;protein_id=WP_000113027.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 207417 207875 . + . ID=gene-AD39_RS21130;Name=decR;gbkey=Gene;gene=decR;gene_biotype=protein_coding;locus_tag=AD39_RS21130;old_locus_tag=AD39_0456 NZ_JJLH01000007.1 Protein Homology CDS 207417 207875 . + 0 ID=cds-WP_000884589.1;Parent=gene-AD39_RS21130;Dbxref=GenBank:WP_000884589.1;Name=WP_000884589.1;gbkey=CDS;gene=decR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308528.2;locus_tag=AD39_RS21130;product=DNA-binding transcriptional regulator DecR;protein_id=WP_000884589.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 207905 209677 . + . ID=gene-AD39_RS21125;Name=mdlA;gbkey=Gene;gene=mdlA;gene_biotype=protein_coding;locus_tag=AD39_RS21125;old_locus_tag=AD39_0457 NZ_JJLH01000007.1 Protein Homology CDS 207905 209677 . + 0 ID=cds-WP_032283026.1;Parent=gene-AD39_RS21125;Dbxref=GenBank:WP_032283026.1;Name=WP_032283026.1;Ontology_term=GO:0055085,GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;gene=mdlA;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308529.1;locus_tag=AD39_RS21125;product=SmdA family multidrug ABC transporter permease/ATP-binding protein;protein_id=WP_032283026.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 209670 211451 . + . ID=gene-AD39_RS21120;Name=mdlB;gbkey=Gene;gene=mdlB;gene_biotype=protein_coding;locus_tag=AD39_RS21120;old_locus_tag=AD39_0458 NZ_JJLH01000007.1 Protein Homology CDS 209670 211451 . + 0 ID=cds-WP_001402071.1;Parent=gene-AD39_RS21120;Dbxref=GenBank:WP_001402071.1;Name=WP_001402071.1;Ontology_term=GO:0055085,GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;gene=mdlB;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308530.1;locus_tag=AD39_RS21120;product=SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;protein_id=WP_001402071.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 211632 211970 . + . ID=gene-AD39_RS21115;Name=glnK;gbkey=Gene;gene=glnK;gene_biotype=protein_coding;locus_tag=AD39_RS21115;old_locus_tag=AD39_0460 NZ_JJLH01000007.1 Protein Homology CDS 211632 211970 . + 0 ID=cds-WP_000780338.1;Parent=gene-AD39_RS21115;Dbxref=GenBank:WP_000780338.1;Name=WP_000780338.1;Ontology_term=GO:0006808,GO:0030234;gbkey=CDS;gene=glnK;go_function=enzyme regulator activity|0030234||IEA;go_process=regulation of nitrogen utilization|0006808||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308531.1;locus_tag=AD39_RS21115;product=P-II family nitrogen regulator;protein_id=WP_000780338.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 212000 213286 . + . ID=gene-AD39_RS21110;Name=amtB;gbkey=Gene;gene=amtB;gene_biotype=protein_coding;locus_tag=AD39_RS21110;old_locus_tag=AD39_0461 NZ_JJLH01000007.1 Protein Homology CDS 212000 213286 . + 0 ID=cds-WP_000685029.1;Parent=gene-AD39_RS21110;Dbxref=GenBank:WP_000685029.1;Name=WP_000685029.1;Ontology_term=GO:0072488,GO:0008519,GO:0005886;gbkey=CDS;gene=amtB;go_component=plasma membrane|0005886||IEA;go_function=ammonium channel activity|0008519||IEA;go_process=ammonium transmembrane transport|0072488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308532.1;locus_tag=AD39_RS21110;product=ammonium transporter AmtB;protein_id=WP_000685029.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 213335 214195 . - . ID=gene-AD39_RS21105;Name=tesB;gbkey=Gene;gene=tesB;gene_biotype=protein_coding;locus_tag=AD39_RS21105;old_locus_tag=AD39_0462 NZ_JJLH01000007.1 Protein Homology CDS 213335 214195 . - 0 ID=cds-WP_000075876.1;Parent=gene-AD39_RS21105;Dbxref=GenBank:WP_000075876.1;Name=WP_000075876.1;gbkey=CDS;gene=tesB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308533.1;locus_tag=AD39_RS21105;product=acyl-CoA thioesterase II;protein_id=WP_000075876.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 214413 214985 . + . ID=gene-AD39_RS21100;Name=ybaY;gbkey=Gene;gene=ybaY;gene_biotype=protein_coding;locus_tag=AD39_RS21100;old_locus_tag=AD39_0463 NZ_JJLH01000007.1 Protein Homology CDS 214413 214985 . + 0 ID=cds-WP_000779826.1;Parent=gene-AD39_RS21100;Dbxref=GenBank:WP_000779826.1;Name=WP_000779826.1;gbkey=CDS;gene=ybaY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706347.1;locus_tag=AD39_RS21100;product=YbaY family lipoprotein;protein_id=WP_000779826.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 215016 215327 . - . ID=gene-AD39_RS21095;Name=AD39_RS21095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS21095;old_locus_tag=AD39_0464 NZ_JJLH01000007.1 Protein Homology CDS 215016 215327 . - 0 ID=cds-WP_001398712.1;Parent=gene-AD39_RS21095;Dbxref=GenBank:WP_001398712.1;Name=WP_001398712.1;Ontology_term=GO:0006281,GO:0003677,GO:0003824,GO:0003908;gbkey=CDS;go_function=DNA binding|0003677||IEA,catalytic activity|0003824||IEA,methylated-DNA-[protein]-cysteine S-methyltransferase activity|0003908||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706349.2;locus_tag=AD39_RS21095;product=MGMT family protein;protein_id=WP_001398712.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 215490 215586 . + . ID=gene-AD39_RS26130;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=SRP_RNA;locus_tag=AD39_RS26130 NZ_JJLH01000007.1 cmsearch SRP_RNA 215490 215586 . + . ID=rna-AD39_RS26130;Parent=gene-AD39_RS26130;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26130;product=signal recognition particle sRNA small type NZ_JJLH01000007.1 cmsearch exon 215490 215586 . + . ID=exon-AD39_RS26130-1;Parent=rna-AD39_RS26130;Dbxref=RFAM:RF00169;gbkey=ncRNA;gene=ffs;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26130;product=signal recognition particle sRNA small type NZ_JJLH01000007.1 RefSeq gene 215706 216059 . + . ID=gene-AD39_RS21090;Name=ybaA;gbkey=Gene;gene=ybaA;gene_biotype=protein_coding;locus_tag=AD39_RS21090;old_locus_tag=AD39_0465 NZ_JJLH01000007.1 Protein Homology CDS 215706 216059 . + 0 ID=cds-WP_000878140.1;Parent=gene-AD39_RS21090;Dbxref=GenBank:WP_000878140.1;Name=WP_000878140.1;gbkey=CDS;gene=ybaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308536.1;locus_tag=AD39_RS21090;product=DUF1428 domain-containing protein;protein_id=WP_000878140.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 216101 217651 . - . ID=gene-AD39_RS21085;Name=pdeB;gbkey=Gene;gene=pdeB;gene_biotype=protein_coding;locus_tag=AD39_RS21085;old_locus_tag=AD39_0466 NZ_JJLH01000007.1 Protein Homology CDS 216101 217651 . - 0 ID=cds-WP_001310610.1;Parent=gene-AD39_RS21085;Dbxref=GenBank:WP_001310610.1;Name=WP_001310610.1;gbkey=CDS;gene=pdeB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414990.2;locus_tag=AD39_RS21085;product=cyclic-guanylate-specific phosphodiesterase PdeB;protein_id=WP_001310610.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 217815 218285 . - . ID=gene-AD39_RS21080;Name=ylaC;gbkey=Gene;gene=ylaC;gene_biotype=protein_coding;locus_tag=AD39_RS21080;old_locus_tag=AD39_0467 NZ_JJLH01000007.1 Protein Homology CDS 217815 218285 . - 0 ID=cds-WP_000136192.1;Parent=gene-AD39_RS21080;Dbxref=GenBank:WP_000136192.1;Name=WP_000136192.1;gbkey=CDS;gene=ylaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308538.2;locus_tag=AD39_RS21080;product=YlaC family protein;protein_id=WP_000136192.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 218401 218952 . - . ID=gene-AD39_RS21075;Name=maa;gbkey=Gene;gene=maa;gene_biotype=protein_coding;locus_tag=AD39_RS21075;old_locus_tag=AD39_0468 NZ_JJLH01000007.1 Protein Homology CDS 218401 218952 . - 0 ID=cds-WP_000102564.1;Parent=gene-AD39_RS21075;Dbxref=GenBank:WP_000102564.1;Name=WP_000102564.1;Ontology_term=GO:0016407;gbkey=CDS;gene=maa;go_function=acetyltransferase activity|0016407||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414992.1;locus_tag=AD39_RS21075;product=maltose O-acetyltransferase;protein_id=WP_000102564.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 219124 219342 . - . ID=gene-AD39_RS21070;Name=hha;gbkey=Gene;gene=hha;gene_biotype=protein_coding;locus_tag=AD39_RS21070;old_locus_tag=AD39_0469 NZ_JJLH01000007.1 Protein Homology CDS 219124 219342 . - 0 ID=cds-WP_001291435.1;Parent=gene-AD39_RS21070;Dbxref=GenBank:WP_001291435.1;Name=WP_001291435.1;gbkey=CDS;gene=hha;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308540.1;locus_tag=AD39_RS21070;product=HHA domain-containing protein;protein_id=WP_001291435.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 219368 219742 . - . ID=gene-AD39_RS21065;Name=tomB;gbkey=Gene;gene=tomB;gene_biotype=protein_coding;locus_tag=AD39_RS21065;old_locus_tag=AD39_0470 NZ_JJLH01000007.1 Protein Homology CDS 219368 219742 . - 0 ID=cds-WP_000344800.1;Parent=gene-AD39_RS21065;Dbxref=GenBank:WP_000344800.1;Name=WP_000344800.1;gbkey=CDS;gene=tomB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001741190.1;locus_tag=AD39_RS21065;product=Hha toxicity modulator TomB;protein_id=WP_000344800.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 220288 223437 . - . ID=gene-AD39_RS21060;Name=acrB;gbkey=Gene;gene=acrB;gene_biotype=protein_coding;locus_tag=AD39_RS21060;old_locus_tag=AD39_0471 NZ_JJLH01000007.1 Protein Homology CDS 220288 223437 . - 0 ID=cds-WP_001132469.1;Parent=gene-AD39_RS21060;Dbxref=GenBank:WP_001132469.1;Name=WP_001132469.1;gbkey=CDS;gene=acrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414995.1;locus_tag=AD39_RS21060;product=efflux RND transporter permease AcrB;protein_id=WP_001132469.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 223460 224653 . - . ID=gene-AD39_RS21055;Name=acrA;gbkey=Gene;gene=acrA;gene_biotype=protein_coding;locus_tag=AD39_RS21055;old_locus_tag=AD39_0472 NZ_JJLH01000007.1 Protein Homology CDS 223460 224653 . - 0 ID=cds-WP_001295324.1;Parent=gene-AD39_RS21055;Dbxref=GenBank:WP_001295324.1;Name=WP_001295324.1;gbkey=CDS;gene=acrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308543.1;locus_tag=AD39_RS21055;product=multidrug efflux RND transporter periplasmic adaptor subunit AcrA;protein_id=WP_001295324.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 224795 225442 . + . ID=gene-AD39_RS21050;Name=acrR;gbkey=Gene;gene=acrR;gene_biotype=protein_coding;locus_tag=AD39_RS21050;old_locus_tag=AD39_0473 NZ_JJLH01000007.1 Protein Homology CDS 224795 225442 . + 0 ID=cds-WP_000101737.1;Parent=gene-AD39_RS21050;Dbxref=GenBank:WP_000101737.1;Name=WP_000101737.1;gbkey=CDS;gene=acrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414997.1;locus_tag=AD39_RS21050;product=multidrug efflux transporter transcriptional repressor AcrR;protein_id=WP_000101737.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 225570 228932 . + . ID=gene-AD39_RS21045;Name=mscK;gbkey=Gene;gene=mscK;gene_biotype=protein_coding;locus_tag=AD39_RS21045;old_locus_tag=AD39_0474 NZ_JJLH01000007.1 Protein Homology CDS 225570 228932 . + 0 ID=cds-WP_003570419.1;Parent=gene-AD39_RS21045;Dbxref=GenBank:WP_003570419.1;Name=WP_003570419.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=mscK;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706358.1;locus_tag=AD39_RS21045;product=mechanosensitive channel MscK;protein_id=WP_003570419.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 229144 229305 . - . ID=gene-AD39_RS21040;Name=rsmS;gbkey=Gene;gene=rsmS;gene_biotype=protein_coding;locus_tag=AD39_RS21040;old_locus_tag=AD39_0475 NZ_JJLH01000007.1 Protein Homology CDS 229144 229305 . - 0 ID=cds-WP_000051146.1;Parent=gene-AD39_RS21040;Dbxref=GenBank:WP_000051146.1;Name=WP_000051146.1;gbkey=CDS;gene=rsmS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414999.1;locus_tag=AD39_RS21040;product=pleiotropic regulatory protein RsmS;protein_id=WP_000051146.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 229319 229846 . - . ID=gene-AD39_RS21035;Name=priC;gbkey=Gene;gene=priC;gene_biotype=protein_coding;locus_tag=AD39_RS21035;old_locus_tag=AD39_0476 NZ_JJLH01000007.1 Protein Homology CDS 229319 229846 . - 0 ID=cds-WP_001402074.1;Parent=gene-AD39_RS21035;Dbxref=GenBank:WP_001402074.1;Name=WP_001402074.1;gbkey=CDS;gene=priC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415000.1;locus_tag=AD39_RS21035;product=primosomal replication protein N'';protein_id=WP_001402074.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 229916 230293 . + . ID=gene-AD39_RS21030;Name=ybaN;gbkey=Gene;gene=ybaN;gene_biotype=protein_coding;locus_tag=AD39_RS21030;old_locus_tag=AD39_0477 NZ_JJLH01000007.1 Protein Homology CDS 229916 230293 . + 0 ID=cds-WP_001188905.1;Parent=gene-AD39_RS21030;Dbxref=GenBank:WP_001188905.1;Name=WP_001188905.1;gbkey=CDS;gene=ybaN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308548.1;locus_tag=AD39_RS21030;product=DUF454 family protein;protein_id=WP_001188905.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 230446 230997 . + . ID=gene-AD39_RS21025;Name=apt;gbkey=Gene;gene=apt;gene_biotype=protein_coding;locus_tag=AD39_RS21025;old_locus_tag=AD39_0478 NZ_JJLH01000007.1 Protein Homology CDS 230446 230997 . + 0 ID=cds-WP_000127356.1;Parent=gene-AD39_RS21025;Dbxref=GenBank:WP_000127356.1;Name=WP_000127356.1;Ontology_term=GO:0006168,GO:0003999;gbkey=CDS;gene=apt;go_function=adenine phosphoribosyltransferase activity|0003999||IEA;go_process=adenine salvage|0006168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125198.1;locus_tag=AD39_RS21025;product=adenine phosphoribosyltransferase;protein_id=WP_000127356.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 231126 233057 . + . ID=gene-AD39_RS21020;Name=dnaX;gbkey=Gene;gene=dnaX;gene_biotype=protein_coding;locus_tag=AD39_RS21020;old_locus_tag=AD39_0479 NZ_JJLH01000007.1 Protein Homology CDS 231126 233057 . + 0 ID=cds-WP_000122008.1;Parent=gene-AD39_RS21020;Dbxref=GenBank:WP_000122008.1;Name=WP_000122008.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0005524,GO:0009360;gbkey=CDS;gene=dnaX;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308550.1;locus_tag=AD39_RS21020;product=DNA polymerase III subunit gamma/tau;protein_id=WP_000122008.1;transl_table=11 NZ_JJLH01000007.1 cmsearch sequence_feature 232390 232454 . + . ID=id-AD39_RS21020;Dbxref=RFAM:RF00382;Note=DnaX frameshifting element;gbkey=misc_feature;gene=dnaX;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS21020 NZ_JJLH01000007.1 RefSeq gene 233110 233439 . + . ID=gene-AD39_RS21015;Name=ybaB;gbkey=Gene;gene=ybaB;gene_biotype=protein_coding;locus_tag=AD39_RS21015;old_locus_tag=AD39_0480 NZ_JJLH01000007.1 Protein Homology CDS 233110 233439 . + 0 ID=cds-WP_000467098.1;Parent=gene-AD39_RS21015;Dbxref=GenBank:WP_000467098.1;Name=WP_000467098.1;Ontology_term=GO:0003677;gbkey=CDS;gene=ybaB;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001364632.1;locus_tag=AD39_RS21015;product=YbaB/EbfC family nucleoid-associated protein;protein_id=WP_000467098.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 233439 234044 . + . ID=gene-AD39_RS21010;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=AD39_RS21010;old_locus_tag=AD39_0481 NZ_JJLH01000007.1 Protein Homology CDS 233439 234044 . + 0 ID=cds-WP_001195025.1;Parent=gene-AD39_RS21010;Dbxref=GenBank:WP_001195025.1;Name=WP_001195025.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0046872;gbkey=CDS;gene=recR;go_function=DNA binding|0003677||IEA,metal ion binding|0046872||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308552.1;locus_tag=AD39_RS21010;product=recombination mediator RecR;protein_id=WP_001195025.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 234154 236028 . + . ID=gene-AD39_RS21005;Name=htpG;gbkey=Gene;gene=htpG;gene_biotype=protein_coding;locus_tag=AD39_RS21005;old_locus_tag=AD39_0482 NZ_JJLH01000007.1 Protein Homology CDS 234154 236028 . + 0 ID=cds-WP_000678208.1;Parent=gene-AD39_RS21005;Dbxref=GenBank:WP_000678208.1;Name=WP_000678208.1;Ontology_term=GO:0006457,GO:0005524,GO:0016887,GO:0051082;gbkey=CDS;gene=htpG;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003903109.1;locus_tag=AD39_RS21005;product=molecular chaperone HtpG;protein_id=WP_000678208.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 236209 236853 . + . ID=gene-AD39_RS21000;Name=adk;gbkey=Gene;gene=adk;gene_biotype=protein_coding;locus_tag=AD39_RS21000;old_locus_tag=AD39_0483 NZ_JJLH01000007.1 Protein Homology CDS 236209 236853 . + 0 ID=cds-WP_001220233.1;Parent=gene-AD39_RS21000;Dbxref=GenBank:WP_001220233.1;Name=WP_001220233.1;Ontology_term=GO:0006139,GO:0004017,GO:0005524;gbkey=CDS;gene=adk;go_function=adenylate kinase activity|0004017||IEA,ATP binding|0005524||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007706188.1;locus_tag=AD39_RS21000;product=adenylate kinase;protein_id=WP_001220233.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 237090 238052 . + . ID=gene-AD39_RS20995;Name=hemH;gbkey=Gene;gene=hemH;gene_biotype=protein_coding;locus_tag=AD39_RS20995;old_locus_tag=AD39_0484 NZ_JJLH01000007.1 Protein Homology CDS 237090 238052 . + 0 ID=cds-WP_001250088.1;Parent=gene-AD39_RS20995;Dbxref=GenBank:WP_001250088.1;Name=WP_001250088.1;Ontology_term=GO:0006779,GO:0004325;gbkey=CDS;gene=hemH;go_function=ferrochelatase activity|0004325||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308555.1;locus_tag=AD39_RS20995;product=ferrochelatase;protein_id=WP_001250088.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 238049 239008 . - . ID=gene-AD39_RS20990;Name=aes;gbkey=Gene;gene=aes;gene_biotype=protein_coding;locus_tag=AD39_RS20990;old_locus_tag=AD39_0485 NZ_JJLH01000007.1 Protein Homology CDS 238049 239008 . - 0 ID=cds-WP_032283027.1;Parent=gene-AD39_RS20990;Dbxref=GenBank:WP_032283027.1;Name=WP_032283027.1;Ontology_term=GO:0016787;gbkey=CDS;gene=aes;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415009.1;locus_tag=AD39_RS20990;product=acetyl esterase;protein_id=WP_032283027.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 239160 240464 . + . ID=gene-AD39_RS20985;Name=gsk;gbkey=Gene;gene=gsk;gene_biotype=protein_coding;locus_tag=AD39_RS20985;old_locus_tag=AD39_0486 NZ_JJLH01000007.1 Protein Homology CDS 239160 240464 . + 0 ID=cds-WP_000671574.1;Parent=gene-AD39_RS20985;Dbxref=GenBank:WP_000671574.1;Name=WP_000671574.1;gbkey=CDS;gene=gsk;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308557.1;locus_tag=AD39_RS20985;product=inosine/guanosine kinase;protein_id=WP_000671574.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 240547 242223 . - . ID=gene-AD39_RS20980;Name=ybaL;gbkey=Gene;gene=ybaL;gene_biotype=protein_coding;locus_tag=AD39_RS20980;old_locus_tag=AD39_0487 NZ_JJLH01000007.1 Protein Homology CDS 240547 242223 . - 0 ID=cds-WP_000546229.1;Parent=gene-AD39_RS20980;Dbxref=GenBank:WP_000546229.1;Name=WP_000546229.1;Ontology_term=GO:0006813,GO:0008324,GO:0051139,GO:0016020;gbkey=CDS;gene=ybaL;go_component=membrane|0016020||IEA;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA,metal cation:proton antiporter activity|0051139||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308558.1;locus_tag=AD39_RS20980;product=YbaL family putative K(+) efflux transporter;protein_id=WP_000546229.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 242461 243681 . - . ID=gene-AD39_RS20975;Name=fsr;gbkey=Gene;gene=fsr;gene_biotype=protein_coding;locus_tag=AD39_RS20975;old_locus_tag=AD39_0488 NZ_JJLH01000007.1 Protein Homology CDS 242461 243681 . - 0 ID=cds-WP_001251614.1;Parent=gene-AD39_RS20975;Dbxref=GenBank:WP_001251614.1;Name=WP_001251614.1;gbkey=CDS;gene=fsr;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415012.1;locus_tag=AD39_RS20975;product=fosmidomycin MFS transporter;protein_id=WP_001251614.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 243899 245551 . + . ID=gene-AD39_RS20970;Name=ushA;gbkey=Gene;gene=ushA;gene_biotype=protein_coding;locus_tag=AD39_RS20970;old_locus_tag=AD39_0489 NZ_JJLH01000007.1 Protein Homology CDS 243899 245551 . + 0 ID=cds-WP_032287489.1;Parent=gene-AD39_RS20970;Dbxref=GenBank:WP_032287489.1;Name=WP_032287489.1;gbkey=CDS;gene=ushA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415013.1;locus_tag=AD39_RS20970;product=bifunctional UDP-sugar hydrolase/5'-nucleotidase;protein_id=WP_032287489.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 245588 246067 . - . ID=gene-AD39_RS20965;Name=ybaK;gbkey=Gene;gene=ybaK;gene_biotype=protein_coding;locus_tag=AD39_RS20965;old_locus_tag=AD39_0490 NZ_JJLH01000007.1 Protein Homology CDS 245588 246067 . - 0 ID=cds-WP_000186631.1;Parent=gene-AD39_RS20965;Dbxref=GenBank:WP_000186631.1;Name=WP_000186631.1;Ontology_term=GO:0002161;gbkey=CDS;gene=ybaK;go_function=aminoacyl-tRNA deacylase activity|0002161||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006818871.1;locus_tag=AD39_RS20965;product=Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK;protein_id=WP_000186631.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 246271 247065 . - . ID=gene-AD39_RS20960;Name=ybaP;gbkey=Gene;gene=ybaP;gene_biotype=protein_coding;locus_tag=AD39_RS20960;old_locus_tag=AD39_0491 NZ_JJLH01000007.1 Protein Homology CDS 246271 247065 . - 0 ID=cds-WP_000365185.1;Parent=gene-AD39_RS20960;Dbxref=GenBank:WP_000365185.1;Name=WP_000365185.1;Ontology_term=GO:0008233;gbkey=CDS;gene=ybaP;go_function=peptidase activity|0008233||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415015.1;locus_tag=AD39_RS20960;product=TraB/GumN family protein;protein_id=WP_000365185.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 247203 247544 . + . ID=gene-AD39_RS20955;Name=ybaQ;gbkey=Gene;gene=ybaQ;gene_biotype=protein_coding;locus_tag=AD39_RS20955;old_locus_tag=AD39_0492 NZ_JJLH01000007.1 Protein Homology CDS 247203 247544 . + 0 ID=cds-WP_001344274.1;Parent=gene-AD39_RS20955;Dbxref=GenBank:WP_001344274.1;Name=WP_001344274.1;Ontology_term=GO:0003677;gbkey=CDS;gene=ybaQ;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415016.4;locus_tag=AD39_RS20955;product=HigA family addiction module antitoxin;protein_id=WP_001344274.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 247658 250162 . - . ID=gene-AD39_RS20950;Name=copA;gbkey=Gene;gene=copA;gene_biotype=protein_coding;locus_tag=AD39_RS20950;old_locus_tag=AD39_0493 NZ_JJLH01000007.1 Protein Homology CDS 247658 250162 . - 0 ID=cds-WP_000083962.1;Parent=gene-AD39_RS20950;Dbxref=GenBank:WP_000083962.1;Name=WP_000083962.1;Ontology_term=GO:0006812,GO:0019829;gbkey=CDS;gene=copA;go_function=ATPase-coupled monoatomic cation transmembrane transporter activity|0019829||IEA;go_process=monoatomic cation transport|0006812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415017.1;locus_tag=AD39_RS20950;product=copper-exporting P-type ATPase CopA;protein_id=WP_000083962.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 250424 251356 . + . ID=gene-AD39_RS20945;Name=glsA;gbkey=Gene;gene=glsA;gene_biotype=protein_coding;locus_tag=AD39_RS20945;old_locus_tag=AD39_0494 NZ_JJLH01000007.1 Protein Homology CDS 250424 251356 . + 0 ID=cds-WP_000883016.1;Parent=gene-AD39_RS20945;Dbxref=GenBank:WP_000883016.1;Name=WP_000883016.1;Ontology_term=GO:0006541,GO:0004359;gbkey=CDS;gene=glsA;go_function=glutaminase activity|0004359||IEA;go_process=glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415018.1;locus_tag=AD39_RS20945;product=glutaminase A;protein_id=WP_000883016.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 251359 252651 . + . ID=gene-AD39_RS20940;Name=ybaT;gbkey=Gene;gene=ybaT;gene_biotype=protein_coding;locus_tag=AD39_RS20940;old_locus_tag=AD39_0495 NZ_JJLH01000007.1 Protein Homology CDS 251359 252651 . + 0 ID=cds-WP_000982172.1;Parent=gene-AD39_RS20940;Dbxref=GenBank:WP_000982172.1;Name=WP_000982172.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;gene=ybaT;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415019.1;locus_tag=AD39_RS20940;product=APC family permease;protein_id=WP_000982172.1;transl_table=11 NZ_JJLH01000007.1 RefSeq pseudogene 252682 252779 . + . ID=gene-AD39_RS29615;Name=AD39_RS29615;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29615;partial=true;pseudo=true;start_range=.,252682 NZ_JJLH01000007.1 Protein Homology CDS 252682 252779 . + 0 ID=cds-AD39_RS29615;Parent=gene-AD39_RS29615;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308571.1;locus_tag=AD39_RS29615;partial=true;product=hypothetical protein;pseudo=true;start_range=.,252682;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 252776 253183 . + . ID=gene-AD39_RS20935;Name=cueR;gbkey=Gene;gene=cueR;gene_biotype=protein_coding;locus_tag=AD39_RS20935;old_locus_tag=AD39_0496 NZ_JJLH01000007.1 Protein Homology CDS 252776 253183 . + 0 ID=cds-WP_001391119.1;Parent=gene-AD39_RS20935;Dbxref=GenBank:WP_001391119.1;Name=WP_001391119.1;gbkey=CDS;gene=cueR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415020.1;locus_tag=AD39_RS20935;product=Cu(I)-responsive transcriptional regulator;protein_id=WP_001391119.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 253184 253642 . - . ID=gene-AD39_RS20930;Name=ybbJ;gbkey=Gene;gene=ybbJ;gene_biotype=protein_coding;locus_tag=AD39_RS20930;old_locus_tag=AD39_0497 NZ_JJLH01000007.1 Protein Homology CDS 253184 253642 . - 0 ID=cds-WP_000970321.1;Parent=gene-AD39_RS20930;Dbxref=GenBank:WP_000970321.1;Name=WP_000970321.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ybbJ;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415021.2;locus_tag=AD39_RS20930;product=NfeD family protein;protein_id=WP_000970321.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 253639 254556 . - . ID=gene-AD39_RS20925;Name=qmcA;gbkey=Gene;gene=qmcA;gene_biotype=protein_coding;locus_tag=AD39_RS20925;old_locus_tag=AD39_0498 NZ_JJLH01000007.1 Protein Homology CDS 253639 254556 . - 0 ID=cds-WP_000904502.1;Parent=gene-AD39_RS20925;Dbxref=GenBank:WP_000904502.1;Name=WP_000904502.1;Ontology_term=GO:0016020;gbkey=CDS;gene=qmcA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308579.1;locus_tag=AD39_RS20925;product=SPFH domain-containing protein;protein_id=WP_000904502.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 254702 255379 . + . ID=gene-AD39_RS20920;Name=fetA;gbkey=Gene;gene=fetA;gene_biotype=protein_coding;gene_synonym=ybbL;locus_tag=AD39_RS20920;old_locus_tag=AD39_0499 NZ_JJLH01000007.1 Protein Homology CDS 254702 255379 . + 0 ID=cds-WP_001157535.1;Parent=gene-AD39_RS20920;Dbxref=GenBank:WP_001157535.1;Name=WP_001157535.1;Ontology_term=GO:1903988,GO:0016887;gbkey=CDS;gene=fetA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=iron ion export across plasma membrane|1903988||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308580.1;locus_tag=AD39_RS20920;product=iron efflux ABC transporter ATP-binding subunit FetA;protein_id=WP_001157535.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 255366 256145 . + . ID=gene-AD39_RS20915;Name=fetB;gbkey=Gene;gene=fetB;gene_biotype=protein_coding;locus_tag=AD39_RS20915;old_locus_tag=AD39_0500 NZ_JJLH01000007.1 Protein Homology CDS 255366 256145 . + 0 ID=cds-WP_001471147.1;Parent=gene-AD39_RS20915;Dbxref=GenBank:WP_001471147.1;Name=WP_001471147.1;Ontology_term=GO:1903988,GO:0005886;gbkey=CDS;gene=fetB;go_component=plasma membrane|0005886||IEA;go_process=iron ion export across plasma membrane|1903988||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308581.2;locus_tag=AD39_RS20915;product=iron efflux ABC transporter permease subunit FetB;protein_id=WP_001471147.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 256208 257062 . - . ID=gene-AD39_RS20910;Name=cnoX;gbkey=Gene;gene=cnoX;gene_biotype=protein_coding;locus_tag=AD39_RS20910;old_locus_tag=AD39_0501 NZ_JJLH01000007.1 Protein Homology CDS 256208 257062 . - 0 ID=cds-WP_001402075.1;Parent=gene-AD39_RS20910;Dbxref=GenBank:WP_001402075.1;Name=WP_001402075.1;gbkey=CDS;gene=cnoX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308582.2;locus_tag=AD39_RS20910;product=chaperedoxin;protein_id=WP_001402075.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 257123 257932 . - . ID=gene-AD39_RS20905;Name=ybbO;gbkey=Gene;gene=ybbO;gene_biotype=protein_coding;locus_tag=AD39_RS20905;old_locus_tag=AD39_0502 NZ_JJLH01000007.1 Protein Homology CDS 257123 257932 . - 0 ID=cds-WP_000148953.1;Parent=gene-AD39_RS20905;Dbxref=GenBank:WP_000148953.1;Name=WP_000148953.1;gbkey=CDS;gene=ybbO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415026.1;locus_tag=AD39_RS20905;product=NADP(+)-dependent aldehyde reductase;protein_id=WP_000148953.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 257922 258545 . - . ID=gene-AD39_RS20900;Name=tesA;gbkey=Gene;gene=tesA;gene_biotype=protein_coding;locus_tag=AD39_RS20900;old_locus_tag=AD39_0503 NZ_JJLH01000007.1 Protein Homology CDS 257922 258545 . - 0 ID=cds-WP_001295836.1;Parent=gene-AD39_RS20900;Dbxref=GenBank:WP_001295836.1;Name=WP_001295836.1;Ontology_term=GO:0006629,GO:0016298;gbkey=CDS;gene=tesA;go_function=lipase activity|0016298||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225520.1;locus_tag=AD39_RS20900;product=multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1;protein_id=WP_001295836.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 258516 259202 . + . ID=gene-AD39_RS20895;Name=ybbA;gbkey=Gene;gene=ybbA;gene_biotype=protein_coding;locus_tag=AD39_RS20895;old_locus_tag=AD39_0504 NZ_JJLH01000007.1 Protein Homology CDS 258516 259202 . + 0 ID=cds-WP_001532344.1;Parent=gene-AD39_RS20895;Dbxref=GenBank:WP_001532344.1;Name=WP_001532344.1;gbkey=CDS;gene=ybbA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415028.1;locus_tag=AD39_RS20895;product=putative ABC transporter ATP-binding protein YbbA;protein_id=WP_001532344.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 259199 261613 . + . ID=gene-AD39_RS20890;Name=ybbP;gbkey=Gene;gene=ybbP;gene_biotype=protein_coding;locus_tag=AD39_RS20890;old_locus_tag=AD39_0505 NZ_JJLH01000007.1 Protein Homology CDS 259199 261613 . + 0 ID=cds-WP_001402076.1;Parent=gene-AD39_RS20890;Dbxref=GenBank:WP_001402076.1;Name=WP_001402076.1;gbkey=CDS;gene=ybbP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415029.1;locus_tag=AD39_RS20890;product=putative ABC transporter permease subunit YbbP;protein_id=WP_001402076.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 261831 261986 . - . ID=gene-AD39_RS30105;Name=dinQ;gbkey=Gene;gene=dinQ;gene_biotype=protein_coding;locus_tag=AD39_RS30105;old_locus_tag=AD39_0506 NZ_JJLH01000007.1 Protein Homology CDS 261831 261986 . - 0 ID=cds-WP_001308457.1;Parent=gene-AD39_RS30105;Dbxref=GenBank:WP_001308457.1;Name=WP_001308457.1;gbkey=CDS;gene=dinQ;inference=COORDINATES: protein motif:HMM:NF041472.1;locus_tag=AD39_RS30105;product=damage-inducible type I toxin DinQ;protein_id=WP_001308457.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 262326 263420 . - . ID=gene-AD39_RS20885;Name=mnmH;gbkey=Gene;gene=mnmH;gene_biotype=protein_coding;locus_tag=AD39_RS20885;old_locus_tag=AD39_0507 NZ_JJLH01000007.1 Protein Homology CDS 262326 263420 . - 0 ID=cds-WP_001158000.1;Parent=gene-AD39_RS20885;Dbxref=GenBank:WP_001158000.1;Name=WP_001158000.1;Ontology_term=GO:0002098,GO:0043828;gbkey=CDS;gene=mnmH;go_function=tRNA 2-selenouridine synthase activity|0043828||IEA;go_process=tRNA wobble uridine modification|0002098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308591.1;locus_tag=AD39_RS20885;product=tRNA 2-selenouridine(34) synthase MnmH;protein_id=WP_001158000.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 263489 264415 . - . ID=gene-AD39_RS20880;Name=allS;gbkey=Gene;gene=allS;gene_biotype=protein_coding;locus_tag=AD39_RS20880;old_locus_tag=AD39_0508 NZ_JJLH01000007.1 Protein Homology CDS 263489 264415 . - 0 ID=cds-WP_000460145.1;Parent=gene-AD39_RS20880;Dbxref=GenBank:WP_000460145.1;Name=WP_000460145.1;gbkey=CDS;gene=allS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308592.1;locus_tag=AD39_RS20880;product=HTH-type transcriptional activator AllS;protein_id=WP_000460145.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 264645 265127 . + . ID=gene-AD39_RS20875;Name=allA;gbkey=Gene;gene=allA;gene_biotype=protein_coding;locus_tag=AD39_RS20875;old_locus_tag=AD39_0509 NZ_JJLH01000007.1 Protein Homology CDS 264645 265127 . + 0 ID=cds-WP_000776395.1;Parent=gene-AD39_RS20875;Dbxref=GenBank:WP_000776395.1;Name=WP_000776395.1;gbkey=CDS;gene=allA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308593.1;locus_tag=AD39_RS20875;product=ureidoglycolate lyase;protein_id=WP_000776395.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 265206 266021 . + . ID=gene-AD39_RS20870;Name=allR;gbkey=Gene;gene=allR;gene_biotype=protein_coding;locus_tag=AD39_RS20870;old_locus_tag=AD39_0510 NZ_JJLH01000007.1 Protein Homology CDS 265206 266021 . + 0 ID=cds-WP_000141262.1;Parent=gene-AD39_RS20870;Dbxref=GenBank:WP_000141262.1;Name=WP_000141262.1;gbkey=CDS;gene=allR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001402077.1;locus_tag=AD39_RS20870;product=HTH-type transcriptional repressor AllR;protein_id=WP_000141262.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 266111 267892 . + . ID=gene-AD39_RS20865;Name=gcl;gbkey=Gene;gene=gcl;gene_biotype=protein_coding;locus_tag=AD39_RS20865;old_locus_tag=AD39_0511 NZ_JJLH01000007.1 Protein Homology CDS 266111 267892 . + 0 ID=cds-WP_001342079.1;Parent=gene-AD39_RS20865;Dbxref=GenBank:WP_001342079.1;Name=WP_001342079.1;Ontology_term=GO:0009436,GO:0009028;gbkey=CDS;gene=gcl;go_function=tartronate-semialdehyde synthase activity|0009028||IEA;go_process=glyoxylate catabolic process|0009436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308595.1;locus_tag=AD39_RS20865;product=glyoxylate carboligase;protein_id=WP_001342079.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 267905 268681 . + . ID=gene-AD39_RS20860;Name=hyi;gbkey=Gene;gene=hyi;gene_biotype=protein_coding;locus_tag=AD39_RS20860;old_locus_tag=AD39_0512 NZ_JJLH01000007.1 Protein Homology CDS 267905 268681 . + 0 ID=cds-WP_000943560.1;Parent=gene-AD39_RS20860;Dbxref=GenBank:WP_000943560.1;Name=WP_000943560.1;gbkey=CDS;gene=hyi;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308596.1;locus_tag=AD39_RS20860;product=hydroxypyruvate isomerase;protein_id=WP_000943560.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 268781 269659 . + . ID=gene-AD39_RS20855;Name=glxR;gbkey=Gene;gene=glxR;gene_biotype=protein_coding;locus_tag=AD39_RS20855;old_locus_tag=AD39_0513 NZ_JJLH01000007.1 Protein Homology CDS 268781 269659 . + 0 ID=cds-WP_000765839.1;Parent=gene-AD39_RS20855;Dbxref=GenBank:WP_000765839.1;Name=WP_000765839.1;Ontology_term=GO:0046487,GO:0008679,GO:0051287;gbkey=CDS;gene=glxR;go_function=2-hydroxy-3-oxopropionate reductase activity|0008679||IEA,NAD binding|0051287||IEA;go_process=glyoxylate metabolic process|0046487||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415042.1;locus_tag=AD39_RS20855;product=2-hydroxy-3-oxopropionate reductase;protein_id=WP_000765839.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 269829 271283 . + . ID=gene-AD39_RS20850;Name=allW;gbkey=Gene;gene=allW;gene_biotype=protein_coding;locus_tag=AD39_RS20850;old_locus_tag=AD39_0514 NZ_JJLH01000007.1 Protein Homology CDS 269829 271283 . + 0 ID=cds-WP_001402078.1;Parent=gene-AD39_RS20850;Dbxref=GenBank:WP_001402078.1;Name=WP_001402078.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=allW;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415044.4;locus_tag=AD39_RS20850;product=allantoin transporter;protein_id=WP_001402078.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 271343 272704 . + . ID=gene-AD39_RS20845;Name=allB;gbkey=Gene;gene=allB;gene_biotype=protein_coding;locus_tag=AD39_RS20845;old_locus_tag=AD39_0515 NZ_JJLH01000007.1 Protein Homology CDS 271343 272704 . + 0 ID=cds-WP_000006887.1;Parent=gene-AD39_RS20845;Dbxref=GenBank:WP_000006887.1;Name=WP_000006887.1;Ontology_term=GO:0000256,GO:0004038;gbkey=CDS;gene=allB;go_function=allantoinase activity|0004038||IEA;go_process=allantoin catabolic process|0000256||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415045.1;locus_tag=AD39_RS20845;product=allantoinase AllB;protein_id=WP_000006887.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 272761 274062 . + . ID=gene-AD39_RS20840;Name=ybbY;gbkey=Gene;gene=ybbY;gene_biotype=protein_coding;locus_tag=AD39_RS20840;old_locus_tag=AD39_0516 NZ_JJLH01000007.1 Protein Homology CDS 272761 274062 . + 0 ID=cds-WP_001297442.1;Parent=gene-AD39_RS20840;Dbxref=GenBank:WP_001297442.1;Name=WP_001297442.1;gbkey=CDS;gene=ybbY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308602.2;locus_tag=AD39_RS20840;product=uracil/xanthine transporter;protein_id=WP_001297442.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 274084 275229 . + . ID=gene-AD39_RS20835;Name=glxK;gbkey=Gene;gene=glxK;gene_biotype=protein_coding;locus_tag=AD39_RS20835;old_locus_tag=AD39_0517 NZ_JJLH01000007.1 Protein Homology CDS 274084 275229 . + 0 ID=cds-WP_000706356.1;Parent=gene-AD39_RS20835;Dbxref=GenBank:WP_000706356.1;Name=WP_000706356.1;gbkey=CDS;gene=glxK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308603.1;locus_tag=AD39_RS20835;product=glycerate 3-kinase;protein_id=WP_000706356.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 275457 276242 . - . ID=gene-AD39_RS20830;Name=allE;gbkey=Gene;gene=allE;gene_biotype=protein_coding;locus_tag=AD39_RS20830;old_locus_tag=AD39_0518 NZ_JJLH01000007.1 Protein Homology CDS 275457 276242 . - 0 ID=cds-WP_000540968.1;Parent=gene-AD39_RS20830;Dbxref=GenBank:WP_000540968.1;Name=WP_000540968.1;Ontology_term=GO:0010136,GO:0071522;gbkey=CDS;gene=allE;go_function=ureidoglycine aminohydrolase activity|0071522||IEA;go_process=ureide catabolic process|0010136||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308604.1;locus_tag=AD39_RS20830;product=(S)-ureidoglycine aminohydrolase;protein_id=WP_000540968.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 276253 277488 . - . ID=gene-AD39_RS20825;Name=allC;gbkey=Gene;gene=allC;gene_biotype=protein_coding;locus_tag=AD39_RS20825;old_locus_tag=AD39_0519 NZ_JJLH01000007.1 Protein Homology CDS 276253 277488 . - 0 ID=cds-WP_001347861.1;Parent=gene-AD39_RS20825;Dbxref=GenBank:WP_001347861.1;Name=WP_001347861.1;Ontology_term=GO:0000256,GO:0009442,GO:0047652;gbkey=CDS;gene=allC;go_function=allantoate deiminase activity|0047652||IEA;go_process=allantoin catabolic process|0000256||IEA,allantoin assimilation pathway|0009442||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415049.1;locus_tag=AD39_RS20825;product=allantoate deiminase;protein_id=WP_001347861.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 277510 278559 . - . ID=gene-AD39_RS20820;Name=allD;gbkey=Gene;gene=allD;gene_biotype=protein_coding;locus_tag=AD39_RS20820;old_locus_tag=AD39_0520 NZ_JJLH01000007.1 Protein Homology CDS 277510 278559 . - 0 ID=cds-WP_000703896.1;Parent=gene-AD39_RS20820;Dbxref=GenBank:WP_000703896.1;Name=WP_000703896.1;Ontology_term=GO:0016491;gbkey=CDS;gene=allD;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415050.1;locus_tag=AD39_RS20820;product=ureidoglycolate dehydrogenase;protein_id=WP_000703896.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 278876 280543 . + . ID=gene-AD39_RS20815;Name=fdrA;gbkey=Gene;gene=fdrA;gene_biotype=protein_coding;locus_tag=AD39_RS20815;old_locus_tag=AD39_0521 NZ_JJLH01000007.1 Protein Homology CDS 278876 280543 . + 0 ID=cds-WP_032254666.1;Parent=gene-AD39_RS20815;Dbxref=GenBank:WP_032254666.1;Name=WP_032254666.1;gbkey=CDS;gene=fdrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308607.1;locus_tag=AD39_RS20815;product=acyl-CoA synthetase FdrA;protein_id=WP_032254666.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 280553 281812 . + . ID=gene-AD39_RS20810;Name=ylbE;gbkey=Gene;gene=ylbE;gene_biotype=protein_coding;locus_tag=AD39_RS20810;old_locus_tag=AD39_0522 NZ_JJLH01000007.1 Protein Homology CDS 280553 281812 . + 0 ID=cds-WP_032254667.1;Parent=gene-AD39_RS20810;Dbxref=GenBank:WP_032254667.1;Name=WP_032254667.1;gbkey=CDS;gene=ylbE;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009029994.1;locus_tag=AD39_RS20810;product=DUF1116 domain-containing protein;protein_id=WP_032254667.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 281823 282638 . + . ID=gene-AD39_RS20805;Name=ylbF;gbkey=Gene;gene=ylbF;gene_biotype=protein_coding;locus_tag=AD39_RS20805;old_locus_tag=AD39_0523 NZ_JJLH01000007.1 Protein Homology CDS 281823 282638 . + 0 ID=cds-WP_021533292.1;Parent=gene-AD39_RS20805;Dbxref=GenBank:WP_021533292.1;Name=WP_021533292.1;gbkey=CDS;gene=ylbF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308609.1;locus_tag=AD39_RS20805;product=DUF2877 domain-containing protein;protein_id=WP_021533292.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 282635 283528 . + . ID=gene-AD39_RS20800;Name=ybcF;gbkey=Gene;gene=ybcF;gene_biotype=protein_coding;locus_tag=AD39_RS20800;old_locus_tag=AD39_0524 NZ_JJLH01000007.1 Protein Homology CDS 282635 283528 . + 0 ID=cds-WP_032182327.1;Parent=gene-AD39_RS20800;Dbxref=GenBank:WP_032182327.1;Name=WP_032182327.1;Ontology_term=GO:0006525,GO:0008804;gbkey=CDS;gene=ybcF;go_function=carbamate kinase activity|0008804||IEA;go_process=arginine metabolic process|0006525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706399.1;locus_tag=AD39_RS20800;product=carbamate kinase;protein_id=WP_032182327.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 283733 284800 . - . ID=gene-AD39_RS20795;Name=purK;gbkey=Gene;gene=purK;gene_biotype=protein_coding;locus_tag=AD39_RS20795;old_locus_tag=AD39_0525 NZ_JJLH01000007.1 Protein Homology CDS 283733 284800 . - 0 ID=cds-WP_000815551.1;Parent=gene-AD39_RS20795;Dbxref=GenBank:WP_000815551.1;Name=WP_000815551.1;Ontology_term=GO:0006189,GO:0004638,GO:0005524,GO:0046872;gbkey=CDS;gene=purK;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415055.1;locus_tag=AD39_RS20795;product=5-(carboxyamino)imidazole ribonucleotide synthase;protein_id=WP_000815551.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 284797 285306 . - . ID=gene-AD39_RS20790;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=AD39_RS20790;old_locus_tag=AD39_0526 NZ_JJLH01000007.1 Protein Homology CDS 284797 285306 . - 0 ID=cds-WP_001295318.1;Parent=gene-AD39_RS20790;Dbxref=GenBank:WP_001295318.1;Name=WP_001295318.1;Ontology_term=GO:0006189,GO:0009152,GO:0004638,GO:0009320;gbkey=CDS;gene=purE;go_component=phosphoribosylaminoimidazole carboxylase complex|0009320||IEA;go_function=phosphoribosylaminoimidazole carboxylase activity|0004638||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308612.1;locus_tag=AD39_RS20790;product=5-(carboxyamino)imidazole ribonucleotide mutase;protein_id=WP_001295318.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 285424 286146 . - . ID=gene-AD39_RS20785;Name=lpxH;gbkey=Gene;gene=lpxH;gene_biotype=protein_coding;locus_tag=AD39_RS20785;old_locus_tag=AD39_0527 NZ_JJLH01000007.1 Protein Homology CDS 285424 286146 . - 0 ID=cds-WP_032220416.1;Parent=gene-AD39_RS20785;Dbxref=GenBank:WP_032220416.1;Name=WP_032220416.1;Ontology_term=GO:0009245,GO:0008758,GO:0016462,GO:0005737;gbkey=CDS;gene=lpxH;go_component=cytoplasm|0005737||IEA;go_function=UDP-2%2C3-diacylglucosamine hydrolase activity|0008758||IEA,pyrophosphatase activity|0016462||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415057.1;locus_tag=AD39_RS20785;product=UDP-2%2C3-diacylglucosamine diphosphatase;protein_id=WP_032220416.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 286149 286643 . - . ID=gene-AD39_RS20780;Name=ppiB;gbkey=Gene;gene=ppiB;gene_biotype=protein_coding;locus_tag=AD39_RS20780;old_locus_tag=AD39_0528 NZ_JJLH01000007.1 Protein Homology CDS 286149 286643 . - 0 ID=cds-WP_000255997.1;Parent=gene-AD39_RS20780;Dbxref=GenBank:WP_000255997.1;Name=WP_000255997.1;gbkey=CDS;gene=ppiB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017465360.1;locus_tag=AD39_RS20780;product=peptidylprolyl isomerase B;protein_id=WP_000255997.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 286817 288202 . + . ID=gene-AD39_RS20775;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=AD39_RS20775;old_locus_tag=AD39_0529 NZ_JJLH01000007.1 Protein Homology CDS 286817 288202 . + 0 ID=cds-WP_000912345.1;Parent=gene-AD39_RS20775;Dbxref=GenBank:WP_000912345.1;Name=WP_000912345.1;Ontology_term=GO:0006423,GO:0004817,GO:0005524,GO:0005737;gbkey=CDS;gene=cysS;go_component=cytoplasm|0005737||IEA;go_function=cysteine-tRNA ligase activity|0004817||IEA,ATP binding|0005524||IEA;go_process=cysteinyl-tRNA aminoacylation|0006423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125243.1;locus_tag=AD39_RS20775;product=cysteine--tRNA ligase;protein_id=WP_000912345.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 288238 288759 . - . ID=gene-AD39_RS20770;Name=ybcI;gbkey=Gene;gene=ybcI;gene_biotype=protein_coding;locus_tag=AD39_RS20770;old_locus_tag=AD39_0530 NZ_JJLH01000007.1 Protein Homology CDS 288238 288759 . - 0 ID=cds-WP_001143552.1;Parent=gene-AD39_RS20770;Dbxref=GenBank:WP_001143552.1;Name=WP_001143552.1;Ontology_term=GO:0016787,GO:0046872,GO:0016020;gbkey=CDS;gene=ybcI;go_component=membrane|0016020||IEA;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415060.1;locus_tag=AD39_RS20770;product=metal-dependent hydrolase;protein_id=WP_001143552.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 288867 289079 . - . ID=gene-AD39_RS20765;Name=ybcJ;gbkey=Gene;gene=ybcJ;gene_biotype=protein_coding;locus_tag=AD39_RS20765;old_locus_tag=AD39_0531 NZ_JJLH01000007.1 Protein Homology CDS 288867 289079 . - 0 ID=cds-WP_000190288.1;Parent=gene-AD39_RS20765;Dbxref=GenBank:WP_000190288.1;Name=WP_000190288.1;gbkey=CDS;gene=ybcJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308617.2;locus_tag=AD39_RS20765;product=ribosome-associated protein YbcJ;protein_id=WP_000190288.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 289081 289947 . - . ID=gene-AD39_RS20760;Name=folD;gbkey=Gene;gene=folD;gene_biotype=protein_coding;locus_tag=AD39_RS20760;old_locus_tag=AD39_0532 NZ_JJLH01000007.1 Protein Homology CDS 289081 289947 . - 0 ID=cds-WP_032286039.1;Parent=gene-AD39_RS20760;Dbxref=GenBank:WP_032286039.1;Name=WP_032286039.1;Ontology_term=GO:0004488;gbkey=CDS;gene=folD;go_function=methylenetetrahydrofolate dehydrogenase (NADP+) activity|0004488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308618.1;locus_tag=AD39_RS20760;product=bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD;protein_id=WP_032286039.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 290428 290970 . + . ID=gene-AD39_RS20755;Name=fimA;gbkey=Gene;gene=fimA;gene_biotype=protein_coding;locus_tag=AD39_RS20755;old_locus_tag=AD39_0533 NZ_JJLH01000007.1 Protein Homology CDS 290428 290970 . + 0 ID=cds-WP_001369891.1;Parent=gene-AD39_RS20755;Dbxref=GenBank:WP_001369891.1;Name=WP_001369891.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=fimA;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308619.2;locus_tag=AD39_RS20755;product=type 1 fimbrial major subunit FimA;protein_id=WP_001369891.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 291190 291882 . + . ID=gene-AD39_RS20750;Name=fimC;gbkey=Gene;gene=fimC;gene_biotype=protein_coding;locus_tag=AD39_RS20750;old_locus_tag=AD39_0535 NZ_JJLH01000007.1 Protein Homology CDS 291190 291882 . + 0 ID=cds-WP_023155699.1;Parent=gene-AD39_RS20750;Dbxref=GenBank:WP_023155699.1;Name=WP_023155699.1;gbkey=CDS;gene=fimC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308620.1;locus_tag=AD39_RS20750;product=type 1 fimbria chaperone FimC;protein_id=WP_023155699.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 291913 294522 . + . ID=gene-AD39_RS20745;Name=sfmD;gbkey=Gene;gene=sfmD;gene_biotype=protein_coding;locus_tag=AD39_RS20745;old_locus_tag=AD39_0536 NZ_JJLH01000007.1 Protein Homology CDS 291913 294522 . + 0 ID=cds-WP_032283037.1;Parent=gene-AD39_RS20745;Dbxref=GenBank:WP_032283037.1;Name=WP_032283037.1;Ontology_term=GO:0009297,GO:0005515,GO:0015473,GO:0016020;gbkey=CDS;gene=sfmD;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA,fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308621.1;locus_tag=AD39_RS20745;product=fimbrial biogenesis usher protein;protein_id=WP_032283037.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 294535 295542 . + . ID=gene-AD39_RS20740;Name=fimH;gbkey=Gene;gene=fimH;gene_biotype=protein_coding;locus_tag=AD39_RS20740;old_locus_tag=AD39_0537 NZ_JJLH01000007.1 Protein Homology CDS 294535 295542 . + 0 ID=cds-WP_000691050.1;Parent=gene-AD39_RS20740;Dbxref=GenBank:WP_000691050.1;Name=WP_000691050.1;Ontology_term=GO:0007155;gbkey=CDS;gene=fimH;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308622.2;locus_tag=AD39_RS20740;product=type 1 fimbria D-mannose specific adhesin FimH;protein_id=WP_000691050.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 295553 296068 . + . ID=gene-AD39_RS20735;Name=sfmF;gbkey=Gene;gene=sfmF;gene_biotype=protein_coding;locus_tag=AD39_RS20735;old_locus_tag=AD39_0538 NZ_JJLH01000007.1 Protein Homology CDS 295553 296068 . + 0 ID=cds-WP_032287490.1;Parent=gene-AD39_RS20735;Dbxref=GenBank:WP_032287490.1;Name=WP_032287490.1;gbkey=CDS;gene=sfmF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308623.1;locus_tag=AD39_RS20735;product=fimbria assembly protein;protein_id=WP_032287490.1;transl_table=11 NZ_JJLH01000007.1 RefSeq pseudogene 296071 296702 . - . ID=gene-AD39_RS20730;Name=fimZ;gbkey=Gene;gene=fimZ;gene_biotype=pseudogene;locus_tag=AD39_RS20730;old_locus_tag=AD39_0539;pseudo=true NZ_JJLH01000007.1 Protein Homology CDS 296071 296702 . - 0 ID=cds-AD39_RS20730;Parent=gene-AD39_RS20730;Note=frameshifted;gbkey=CDS;gene=fimZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308624.1;locus_tag=AD39_RS20730;product=fimbria biosynthesis transcriptional regulator FimZ;pseudo=true;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 296945 297021 . + . ID=gene-AD39_RS20725;Name=AD39_RS20725;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20725;old_locus_tag=AD39_0540 NZ_JJLH01000007.1 tRNAscan-SE tRNA 296945 297021 . + . ID=rna-AD39_RS20725;Parent=gene-AD39_RS20725;anticodon=(pos:296979..296981);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20725;product=tRNA-Arg NZ_JJLH01000007.1 tRNAscan-SE exon 296945 297021 . + . ID=exon-AD39_RS20725-1;Parent=rna-AD39_RS20725;anticodon=(pos:296979..296981);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20725;product=tRNA-Arg NZ_JJLH01000007.1 RefSeq gene 297067 297828 . - . ID=gene-AD39_RS20720;Name=envY;gbkey=Gene;gene=envY;gene_biotype=protein_coding;locus_tag=AD39_RS20720;old_locus_tag=AD39_0541 NZ_JJLH01000007.1 Protein Homology CDS 297067 297828 . - 0 ID=cds-WP_001177464.1;Parent=gene-AD39_RS20720;Dbxref=GenBank:WP_001177464.1;Name=WP_001177464.1;gbkey=CDS;gene=envY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308625.1;locus_tag=AD39_RS20720;product=DNA-binding transcriptional regulator EnvY;protein_id=WP_001177464.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 298011 298901 . - . ID=gene-AD39_RS20715;Name=ybcH;gbkey=Gene;gene=ybcH;gene_biotype=protein_coding;locus_tag=AD39_RS20715;old_locus_tag=AD39_0542 NZ_JJLH01000007.1 Protein Homology CDS 298011 298901 . - 0 ID=cds-WP_001224569.1;Parent=gene-AD39_RS20715;Dbxref=GenBank:WP_001224569.1;Name=WP_001224569.1;gbkey=CDS;gene=ybcH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308626.1;locus_tag=AD39_RS20715;product=DUF4434 family protein;protein_id=WP_001224569.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 298902 301874 . - . ID=gene-AD39_RS20710;Name=nfrA;gbkey=Gene;gene=nfrA;gene_biotype=protein_coding;locus_tag=AD39_RS20710;old_locus_tag=AD39_0543 NZ_JJLH01000007.1 Protein Homology CDS 298902 301874 . - 0 ID=cds-WP_001477981.1;Parent=gene-AD39_RS20710;Dbxref=GenBank:WP_001477981.1;Name=WP_001477981.1;gbkey=CDS;gene=nfrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415100.1;locus_tag=AD39_RS20710;product=bacteriophage adsorption protein NfrA;protein_id=WP_001477981.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 301861 304098 . - . ID=gene-AD39_RS20705;Name=nrfB;gbkey=Gene;gene=nrfB;gene_biotype=protein_coding;locus_tag=AD39_RS20705;old_locus_tag=AD39_0544 NZ_JJLH01000007.1 Protein Homology CDS 301861 304098 . - 0 ID=cds-WP_032141753.1;Parent=gene-AD39_RS20705;Dbxref=GenBank:WP_032141753.1;Name=WP_032141753.1;gbkey=CDS;gene=nrfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308628.1;locus_tag=AD39_RS20705;product=cyclic di-3'%2C5'-guanylate-activated glycosyltransferase NrfB;protein_id=WP_032141753.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 304248 305690 . - . ID=gene-AD39_RS20700;Name=cusS;gbkey=Gene;gene=cusS;gene_biotype=protein_coding;locus_tag=AD39_RS20700;old_locus_tag=AD39_0545 NZ_JJLH01000007.1 Protein Homology CDS 304248 305690 . - 0 ID=cds-WP_032283038.1;Parent=gene-AD39_RS20700;Dbxref=GenBank:WP_032283038.1;Name=WP_032283038.1;gbkey=CDS;gene=cusS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415102.1;locus_tag=AD39_RS20700;product=Cu(+)/Ag(+) sensor histidine kinase CusS;protein_id=WP_032283038.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 305680 306363 . - . ID=gene-AD39_RS20695;Name=cusR;gbkey=Gene;gene=cusR;gene_biotype=protein_coding;locus_tag=AD39_RS20695;old_locus_tag=AD39_0546 NZ_JJLH01000007.1 Protein Homology CDS 305680 306363 . - 0 ID=cds-WP_001634121.1;Parent=gene-AD39_RS20695;Dbxref=GenBank:WP_001634121.1;Name=WP_001634121.1;gbkey=CDS;gene=cusR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308636.1;locus_tag=AD39_RS20695;product=copper response regulator transcription factor CusR;protein_id=WP_001634121.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 306520 307902 . + . ID=gene-AD39_RS20690;Name=cusC;gbkey=Gene;gene=cusC;gene_biotype=protein_coding;locus_tag=AD39_RS20690;old_locus_tag=AD39_0547 NZ_JJLH01000007.1 Protein Homology CDS 306520 307902 . + 0 ID=cds-WP_032186188.1;Parent=gene-AD39_RS20690;Dbxref=GenBank:WP_032186188.1;Name=WP_032186188.1;gbkey=CDS;gene=cusC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308637.1;locus_tag=AD39_RS20690;product=Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC;protein_id=WP_032186188.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 307926 308258 . + . ID=gene-AD39_RS20685;Name=cusF;gbkey=Gene;gene=cusF;gene_biotype=protein_coding;locus_tag=AD39_RS20685;old_locus_tag=AD39_0548 NZ_JJLH01000007.1 Protein Homology CDS 307926 308258 . + 0 ID=cds-WP_000709875.1;Parent=gene-AD39_RS20685;Dbxref=GenBank:WP_000709875.1;Name=WP_000709875.1;gbkey=CDS;gene=cusF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706420.1;locus_tag=AD39_RS20685;product=Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF;protein_id=WP_000709875.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 308274 309497 . + . ID=gene-AD39_RS20680;Name=cusB;gbkey=Gene;gene=cusB;gene_biotype=protein_coding;locus_tag=AD39_RS20680;old_locus_tag=AD39_0549 NZ_JJLH01000007.1 Protein Homology CDS 308274 309497 . + 0 ID=cds-WP_023155706.1;Parent=gene-AD39_RS20680;Dbxref=GenBank:WP_023155706.1;Name=WP_023155706.1;gbkey=CDS;gene=cusB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308639.1;locus_tag=AD39_RS20680;product=Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit CusB;protein_id=WP_023155706.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 309509 312652 . + . ID=gene-AD39_RS20675;Name=cusA;gbkey=Gene;gene=cusA;gene_biotype=protein_coding;locus_tag=AD39_RS20675;old_locus_tag=AD39_0550 NZ_JJLH01000007.1 Protein Homology CDS 309509 312652 . + 0 ID=cds-WP_032287491.1;Parent=gene-AD39_RS20675;Dbxref=GenBank:WP_032287491.1;Name=WP_032287491.1;gbkey=CDS;gene=cusA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415107.1;locus_tag=AD39_RS20675;product=Cu(+)/Ag(+) efflux RND transporter permease subunit CusA;protein_id=WP_032287491.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 312754 314130 . + . ID=gene-AD39_RS20670;Name=pheP;gbkey=Gene;gene=pheP;gene_biotype=protein_coding;locus_tag=AD39_RS20670;old_locus_tag=AD39_0551 NZ_JJLH01000007.1 Protein Homology CDS 312754 314130 . + 0 ID=cds-WP_024166623.1;Parent=gene-AD39_RS20670;Dbxref=GenBank:WP_024166623.1;Name=WP_024166623.1;Ontology_term=GO:0006865;gbkey=CDS;gene=pheP;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415108.1;locus_tag=AD39_RS20670;product=phenylalanine transporter;protein_id=WP_024166623.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 314198 315445 . - . ID=gene-AD39_RS20665;Name=ybdG;gbkey=Gene;gene=ybdG;gene_biotype=protein_coding;locus_tag=AD39_RS20665;old_locus_tag=AD39_0552 NZ_JJLH01000007.1 Protein Homology CDS 314198 315445 . - 0 ID=cds-WP_001153148.1;Parent=gene-AD39_RS20665;Dbxref=GenBank:WP_001153148.1;Name=WP_001153148.1;gbkey=CDS;gene=ybdG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415109.1;locus_tag=AD39_RS20665;product=mechanosensitive ion channel YbdG;protein_id=WP_001153148.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 315703 316356 . - . ID=gene-AD39_RS20660;Name=nfsB;gbkey=Gene;gene=nfsB;gene_biotype=protein_coding;locus_tag=AD39_RS20660;old_locus_tag=AD39_0553 NZ_JJLH01000007.1 Protein Homology CDS 315703 316356 . - 0 ID=cds-WP_000351464.1;Parent=gene-AD39_RS20660;Dbxref=GenBank:WP_000351464.1;Name=WP_000351464.1;Ontology_term=GO:0016491;gbkey=CDS;gene=nfsB;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308643.1;locus_tag=AD39_RS20660;product=oxygen-insensitive NAD(P)H nitroreductase;protein_id=WP_000351464.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 316450 316818 . - . ID=gene-AD39_RS20655;Name=ybdF;gbkey=Gene;gene=ybdF;gene_biotype=protein_coding;locus_tag=AD39_RS20655;old_locus_tag=AD39_0554 NZ_JJLH01000007.1 Protein Homology CDS 316450 316818 . - 0 ID=cds-WP_000360955.1;Parent=gene-AD39_RS20655;Dbxref=GenBank:WP_000360955.1;Name=WP_000360955.1;gbkey=CDS;gene=ybdF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308644.1;locus_tag=AD39_RS20655;product=MmcQ/YjbR family DNA-binding protein;protein_id=WP_000360955.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 316883 317131 . - . ID=gene-AD39_RS20650;Name=ybdJ;gbkey=Gene;gene=ybdJ;gene_biotype=protein_coding;locus_tag=AD39_RS20650;old_locus_tag=AD39_0555 NZ_JJLH01000007.1 Protein Homology CDS 316883 317131 . - 0 ID=cds-WP_000682524.1;Parent=gene-AD39_RS20650;Dbxref=GenBank:WP_000682524.1;Name=WP_000682524.1;gbkey=CDS;gene=ybdJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308645.1;locus_tag=AD39_RS20650;product=DUF1158 domain-containing protein;protein_id=WP_000682524.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 317197 318315 . - . ID=gene-AD39_RS20645;Name=ybdK;gbkey=Gene;gene=ybdK;gene_biotype=protein_coding;locus_tag=AD39_RS20645;old_locus_tag=AD39_0556 NZ_JJLH01000007.1 Protein Homology CDS 317197 318315 . - 0 ID=cds-WP_001402087.1;Parent=gene-AD39_RS20645;Dbxref=GenBank:WP_001402087.1;Name=WP_001402087.1;Ontology_term=GO:0042398,GO:0004357;gbkey=CDS;gene=ybdK;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=modified amino acid biosynthetic process|0042398||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415113.1;locus_tag=AD39_RS20645;product=YbdK family carboxylate-amine ligase;protein_id=WP_001402087.1;transl_table=11 NZ_JJLH01000007.1 RefSeq pseudogene 318531 318799 . - . ID=gene-AD39_RS30025;Name=AD39_RS30025;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30025;pseudo=true NZ_JJLH01000007.1 Protein Homology CDS 318531 318799 . - 0 ID=cds-AD39_RS30025;Parent=gene-AD39_RS30025;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009008364.1;locus_tag=AD39_RS30025;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 318768 318920 . + . ID=gene-AD39_RS20640;Name=hokE;gbkey=Gene;gene=hokE;gene_biotype=protein_coding;locus_tag=AD39_RS20640;old_locus_tag=AD39_0557 NZ_JJLH01000007.1 Protein Homology CDS 318768 318920 . + 0 ID=cds-WP_000956455.1;Parent=gene-AD39_RS20640;Dbxref=GenBank:WP_000956455.1;Name=WP_000956455.1;gbkey=CDS;gene=hokE;inference=COORDINATES: similar to AA sequence:RefSeq:YP_025295.1;locus_tag=AD39_RS20640;product=type I toxin-antitoxin system toxin HokE;protein_id=WP_000956455.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 319042 319662 . - . ID=gene-AD39_RS20635;Name=entD;gbkey=Gene;gene=entD;gene_biotype=protein_coding;locus_tag=AD39_RS20635;old_locus_tag=AD39_0558 NZ_JJLH01000007.1 Protein Homology CDS 319042 319662 . - 0 ID=cds-WP_001506608.1;Parent=gene-AD39_RS20635;Dbxref=GenBank:WP_001506608.1;Name=WP_001506608.1;Ontology_term=GO:0009239,GO:0000287,GO:0008897,GO:0009366;gbkey=CDS;gene=entD;go_component=enterobactin synthetase complex|0009366||IEA;go_function=magnesium ion binding|0000287||IEA,holo-[acyl-carrier-protein] synthase activity|0008897||IEA;go_process=enterobactin biosynthetic process|0009239||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415115.2;locus_tag=AD39_RS20635;product=enterobactin synthase subunit EntD;protein_id=WP_001506608.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 319837 322077 . - . ID=gene-AD39_RS20630;Name=fepA;gbkey=Gene;gene=fepA;gene_biotype=protein_coding;locus_tag=AD39_RS20630;old_locus_tag=AD39_0559 NZ_JJLH01000007.1 Protein Homology CDS 319837 322077 . - 0 ID=cds-WP_001034879.1;Parent=gene-AD39_RS20630;Dbxref=GenBank:WP_001034879.1;Name=WP_001034879.1;gbkey=CDS;gene=fepA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308650.1;locus_tag=AD39_RS20630;product=siderophore enterobactin receptor FepA;protein_id=WP_001034879.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 322320 323522 . + . ID=gene-AD39_RS20625;Name=fes;gbkey=Gene;gene=fes;gene_biotype=protein_coding;locus_tag=AD39_RS20625;old_locus_tag=AD39_0561 NZ_JJLH01000007.1 Protein Homology CDS 322320 323522 . + 0 ID=cds-WP_000125814.1;Parent=gene-AD39_RS20625;Dbxref=GenBank:WP_000125814.1;Name=WP_000125814.1;Ontology_term=GO:0005506,GO:0008849;gbkey=CDS;gene=fes;go_function=iron ion binding|0005506||IEA,enterochelin esterase activity|0008849||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308651.2;locus_tag=AD39_RS20625;product=enterochelin esterase;protein_id=WP_000125814.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 323525 323743 . + . ID=gene-AD39_RS20620;Name=ybdZ;gbkey=Gene;gene=ybdZ;gene_biotype=protein_coding;locus_tag=AD39_RS20620;old_locus_tag=AD39_0562 NZ_JJLH01000007.1 Protein Homology CDS 323525 323743 . + 0 ID=cds-WP_000885781.1;Parent=gene-AD39_RS20620;Dbxref=GenBank:WP_000885781.1;Name=WP_000885781.1;gbkey=CDS;gene=ybdZ;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502592.1;locus_tag=AD39_RS20620;product=enterobactin biosynthesis protein YbdZ;protein_id=WP_000885781.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 323740 327621 . + . ID=gene-AD39_RS20615;Name=entF;gbkey=Gene;gene=entF;gene_biotype=protein_coding;locus_tag=AD39_RS20615;old_locus_tag=AD39_0563 NZ_JJLH01000007.1 Protein Homology CDS 323740 327621 . + 0 ID=cds-WP_032286041.1;Parent=gene-AD39_RS20615;Dbxref=GenBank:WP_032286041.1;Name=WP_032286041.1;Ontology_term=GO:0009058,GO:0003824,GO:0031177;gbkey=CDS;gene=entF;go_function=catalytic activity|0003824||IEA,phosphopantetheine binding|0031177||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415118.1;locus_tag=AD39_RS20615;product=enterobactin non-ribosomal peptide synthetase EntF;protein_id=WP_032286041.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 327837 328970 . + . ID=gene-AD39_RS20610;Name=wzz(fepE);gbkey=Gene;gene=wzz(fepE);gene_biotype=protein_coding;locus_tag=AD39_RS20610;old_locus_tag=AD39_0564 NZ_JJLH01000007.1 Protein Homology CDS 327837 328970 . + 0 ID=cds-WP_032287492.1;Parent=gene-AD39_RS20610;Dbxref=GenBank:WP_032287492.1;Name=WP_032287492.1;Ontology_term=GO:0009103,GO:0016020;gbkey=CDS;gene=wzz(fepE);go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308653.1;locus_tag=AD39_RS20610;product=LPS O-antigen length regulator Wzz(fepE);protein_id=WP_032287492.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 328967 329782 . - . ID=gene-AD39_RS20605;Name=fepC;gbkey=Gene;gene=fepC;gene_biotype=protein_coding;locus_tag=AD39_RS20605;old_locus_tag=AD39_0565 NZ_JJLH01000007.1 Protein Homology CDS 328967 329782 . - 0 ID=cds-WP_000140647.1;Parent=gene-AD39_RS20605;Dbxref=GenBank:WP_000140647.1;Name=WP_000140647.1;Ontology_term=GO:0005524;gbkey=CDS;gene=fepC;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415120.1;locus_tag=AD39_RS20605;product=iron-enterobactin ABC transporter ATP-binding protein;protein_id=WP_000140647.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 329779 330771 . - . ID=gene-AD39_RS20600;Name=fepG;gbkey=Gene;gene=fepG;gene_biotype=protein_coding;locus_tag=AD39_RS20600;old_locus_tag=AD39_0566 NZ_JJLH01000007.1 Protein Homology CDS 329779 330771 . - 0 ID=cds-WP_000640968.1;Parent=gene-AD39_RS20600;Dbxref=GenBank:WP_000640968.1;Name=WP_000640968.1;Ontology_term=GO:0022857;gbkey=CDS;gene=fepG;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308655.1;locus_tag=AD39_RS20600;product=iron-enterobactin ABC transporter permease;protein_id=WP_000640968.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 330768 331772 . - . ID=gene-AD39_RS20595;Name=fepD;gbkey=Gene;gene=fepD;gene_biotype=protein_coding;locus_tag=AD39_RS20595;old_locus_tag=AD39_0567 NZ_JJLH01000007.1 Protein Homology CDS 330768 331772 . - 0 ID=cds-WP_032287493.1;Parent=gene-AD39_RS20595;Dbxref=GenBank:WP_032287493.1;Name=WP_032287493.1;Ontology_term=GO:0022857,GO:0016020;gbkey=CDS;gene=fepD;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308656.1;locus_tag=AD39_RS20595;product=Fe(3+)-siderophore ABC transporter permease;protein_id=WP_032287493.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 331883 333133 . + . ID=gene-AD39_RS20590;Name=entS;gbkey=Gene;gene=entS;gene_biotype=protein_coding;locus_tag=AD39_RS20590;old_locus_tag=AD39_0568 NZ_JJLH01000007.1 Protein Homology CDS 331883 333133 . + 0 ID=cds-WP_001041789.1;Parent=gene-AD39_RS20590;Dbxref=GenBank:WP_001041789.1;Name=WP_001041789.1;Ontology_term=GO:0042930,GO:0042931;gbkey=CDS;gene=entS;go_function=enterobactin transmembrane transporter activity|0042931||IEA;go_process=enterobactin transport|0042930||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415123.1;locus_tag=AD39_RS20590;product=enterobactin transporter EntS;protein_id=WP_001041789.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 333137 334093 . - . ID=gene-AD39_RS20585;Name=fepB;gbkey=Gene;gene=fepB;gene_biotype=protein_coding;locus_tag=AD39_RS20585;old_locus_tag=AD39_0569 NZ_JJLH01000007.1 Protein Homology CDS 333137 334093 . - 0 ID=cds-WP_001234314.1;Parent=gene-AD39_RS20585;Dbxref=GenBank:WP_001234314.1;Name=WP_001234314.1;gbkey=CDS;gene=fepB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415124.1;locus_tag=AD39_RS20585;product=Fe2+-enterobactin ABC transporter substrate-binding protein;protein_id=WP_001234314.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 334468 335643 . + . ID=gene-AD39_RS20580;Name=entC;gbkey=Gene;gene=entC;gene_biotype=protein_coding;locus_tag=AD39_RS20580;old_locus_tag=AD39_0570 NZ_JJLH01000007.1 Protein Homology CDS 334468 335643 . + 0 ID=cds-WP_001295313.1;Parent=gene-AD39_RS20580;Dbxref=GenBank:WP_001295313.1;Name=WP_001295313.1;Ontology_term=GO:0008909;gbkey=CDS;gene=entC;go_function=isochorismate synthase activity|0008909||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308659.1;locus_tag=AD39_RS20580;product=isochorismate synthase EntC;protein_id=WP_001295313.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 335653 337263 . + . ID=gene-AD39_RS20575;Name=entE;gbkey=Gene;gene=entE;gene_biotype=protein_coding;locus_tag=AD39_RS20575;old_locus_tag=AD39_0571 NZ_JJLH01000007.1 Protein Homology CDS 335653 337263 . + 0 ID=cds-WP_000026805.1;Parent=gene-AD39_RS20575;Dbxref=GenBank:WP_000026805.1;Name=WP_000026805.1;gbkey=CDS;gene=entE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415126.1;locus_tag=AD39_RS20575;product=(2%2C3-dihydroxybenzoyl)adenylate synthase EntE;protein_id=WP_000026805.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 337277 338134 . + . ID=gene-AD39_RS20570;Name=entB;gbkey=Gene;gene=entB;gene_biotype=protein_coding;locus_tag=AD39_RS20570;old_locus_tag=AD39_0572 NZ_JJLH01000007.1 Protein Homology CDS 337277 338134 . + 0 ID=cds-WP_001007142.1;Parent=gene-AD39_RS20570;Dbxref=GenBank:WP_001007142.1;Name=WP_001007142.1;gbkey=CDS;gene=entB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308661.1;locus_tag=AD39_RS20570;product=enterobactin biosynthesis bifunctional isochorismatase/aryl carrier protein EntB;protein_id=WP_001007142.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 338134 338880 . + . ID=gene-AD39_RS20565;Name=entA;gbkey=Gene;gene=entA;gene_biotype=protein_coding;locus_tag=AD39_RS20565;old_locus_tag=AD39_0573 NZ_JJLH01000007.1 Protein Homology CDS 338134 338880 . + 0 ID=cds-WP_000347664.1;Parent=gene-AD39_RS20565;Dbxref=GenBank:WP_000347664.1;Name=WP_000347664.1;gbkey=CDS;gene=entA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706451.2;locus_tag=AD39_RS20565;product=2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase EntA;protein_id=WP_000347664.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 338883 339296 . + . ID=gene-AD39_RS20560;Name=entH;gbkey=Gene;gene=entH;gene_biotype=protein_coding;locus_tag=AD39_RS20560;old_locus_tag=AD39_0574 NZ_JJLH01000007.1 Protein Homology CDS 338883 339296 . + 0 ID=cds-WP_000637953.1;Parent=gene-AD39_RS20560;Dbxref=GenBank:WP_000637953.1;Name=WP_000637953.1;gbkey=CDS;gene=entH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415129.1;locus_tag=AD39_RS20560;product=proofreading thioesterase EntH;protein_id=WP_000637953.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 339477 341582 . + . ID=gene-AD39_RS20555;Name=cstA;gbkey=Gene;gene=cstA;gene_biotype=protein_coding;locus_tag=AD39_RS20555;old_locus_tag=AD39_0575 NZ_JJLH01000007.1 Protein Homology CDS 339477 341582 . + 0 ID=cds-WP_032283042.1;Parent=gene-AD39_RS20555;Dbxref=GenBank:WP_032283042.1;Name=WP_032283042.1;Ontology_term=GO:0009267;gbkey=CDS;gene=cstA;go_process=cellular response to starvation|0009267||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415130.1;locus_tag=AD39_RS20555;product=pyruvate/proton symporter CstA;protein_id=WP_032283042.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 341764 341961 . + . ID=gene-AD39_RS20550;Name=ybdD;gbkey=Gene;gene=ybdD;gene_biotype=protein_coding;locus_tag=AD39_RS20550;old_locus_tag=AD39_0576 NZ_JJLH01000007.1 Protein Homology CDS 341764 341961 . + 0 ID=cds-WP_000460431.1;Parent=gene-AD39_RS20550;Dbxref=GenBank:WP_000460431.1;Name=WP_000460431.1;gbkey=CDS;gene=ybdD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904950.1;locus_tag=AD39_RS20550;product=YbdD/YjiX family protein;protein_id=WP_000460431.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 341971 343059 . - . ID=gene-AD39_RS20545;Name=hcxA;gbkey=Gene;gene=hcxA;gene_biotype=protein_coding;locus_tag=AD39_RS20545;old_locus_tag=AD39_0577 NZ_JJLH01000007.1 Protein Homology CDS 341971 343059 . - 0 ID=cds-WP_023155710.1;Parent=gene-AD39_RS20545;Dbxref=GenBank:WP_023155710.1;Name=WP_023155710.1;gbkey=CDS;gene=hcxA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308665.1;locus_tag=AD39_RS20545;product=hydroxycarboxylate dehydrogenase HcxA;protein_id=WP_023155710.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 343168 344328 . + . ID=gene-AD39_RS20540;Name=ybdL;gbkey=Gene;gene=ybdL;gene_biotype=protein_coding;locus_tag=AD39_RS20540;old_locus_tag=AD39_0578 NZ_JJLH01000007.1 Protein Homology CDS 343168 344328 . + 0 ID=cds-WP_000183934.1;Parent=gene-AD39_RS20540;Dbxref=GenBank:WP_000183934.1;Name=WP_000183934.1;gbkey=CDS;gene=ybdL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706456.1;locus_tag=AD39_RS20540;product=methionine-oxo-acid transaminase;protein_id=WP_000183934.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 344329 344958 . - . ID=gene-AD39_RS20535;Name=ybdM;gbkey=Gene;gene=ybdM;gene_biotype=protein_coding;locus_tag=AD39_RS20535;old_locus_tag=AD39_0579 NZ_JJLH01000007.1 Protein Homology CDS 344329 344958 . - 0 ID=cds-WP_000502945.1;Parent=gene-AD39_RS20535;Dbxref=GenBank:WP_000502945.1;Name=WP_000502945.1;Ontology_term=GO:0071453,GO:0003677;gbkey=CDS;gene=ybdM;go_function=DNA binding|0003677||IEA;go_process=cellular response to oxygen levels|0071453||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415134.1;locus_tag=AD39_RS20535;product=IbrB-like domain-containing protein;protein_id=WP_000502945.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 344931 346151 . - . ID=gene-AD39_RS20530;Name=ybdN;gbkey=Gene;gene=ybdN;gene_biotype=protein_coding;locus_tag=AD39_RS20530;old_locus_tag=AD39_0580 NZ_JJLH01000007.1 Protein Homology CDS 344931 346151 . - 0 ID=cds-WP_000029824.1;Parent=gene-AD39_RS20530;Dbxref=GenBank:WP_000029824.1;Name=WP_000029824.1;gbkey=CDS;gene=ybdN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308668.1;locus_tag=AD39_RS20530;product=phosphoadenosine phosphosulfate reductase;protein_id=WP_000029824.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 346298 347200 . - . ID=gene-AD39_RS20525;Name=citR;gbkey=Gene;gene=citR;gene_biotype=protein_coding;gene_synonym=ybdO;locus_tag=AD39_RS20525;old_locus_tag=AD39_0581 NZ_JJLH01000007.1 Protein Homology CDS 346298 347200 . - 0 ID=cds-WP_000002452.1;Parent=gene-AD39_RS20525;Dbxref=GenBank:WP_000002452.1;Name=WP_000002452.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=citR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415136.1;locus_tag=AD39_RS20525;product=DNA-binding transcriptional repressor CitR;protein_id=WP_000002452.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 347409 348155 . - . ID=gene-AD39_RS20520;Name=dsbG;gbkey=Gene;gene=dsbG;gene_biotype=protein_coding;locus_tag=AD39_RS20520;old_locus_tag=AD39_0582 NZ_JJLH01000007.1 Protein Homology CDS 347409 348155 . - 0 ID=cds-WP_000913832.1;Parent=gene-AD39_RS20520;Dbxref=GenBank:WP_000913832.1;Name=WP_000913832.1;gbkey=CDS;gene=dsbG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308670.3;locus_tag=AD39_RS20520;product=thiol:disulfide interchange protein DsbG;protein_id=WP_000913832.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 348527 349090 . + . ID=gene-AD39_RS20515;Name=ahpC;gbkey=Gene;gene=ahpC;gene_biotype=protein_coding;locus_tag=AD39_RS20515;old_locus_tag=AD39_0583 NZ_JJLH01000007.1 Protein Homology CDS 348527 349090 . + 0 ID=cds-WP_000052796.1;Parent=gene-AD39_RS20515;Dbxref=GenBank:WP_000052796.1;Name=WP_000052796.1;Ontology_term=GO:0006979,GO:0102039;gbkey=CDS;gene=ahpC;go_function=NADH-dependent peroxiredoxin activity|0102039||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003858764.1;locus_tag=AD39_RS20515;product=alkyl hydroperoxide reductase subunit C;protein_id=WP_000052796.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 349219 350784 . + . ID=gene-AD39_RS20510;Name=ahpF;gbkey=Gene;gene=ahpF;gene_biotype=protein_coding;locus_tag=AD39_RS20510;old_locus_tag=AD39_0584 NZ_JJLH01000007.1 Protein Homology CDS 349219 350784 . + 0 ID=cds-WP_000887629.1;Parent=gene-AD39_RS20510;Dbxref=GenBank:WP_000887629.1;Name=WP_000887629.1;Ontology_term=GO:0000302,GO:0008785,GO:0050660,GO:0051287;gbkey=CDS;gene=ahpF;go_function=alkyl hydroperoxide reductase activity|0008785||IEA,flavin adenine dinucleotide binding|0050660||IEA,NAD binding|0051287||IEA;go_process=response to reactive oxygen species|0000302||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017455864.1;locus_tag=AD39_RS20510;product=alkyl hydroperoxide reductase subunit F;protein_id=WP_000887629.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 350905 351333 . - . ID=gene-AD39_RS20505;Name=uspG;gbkey=Gene;gene=uspG;gene_biotype=protein_coding;locus_tag=AD39_RS20505;old_locus_tag=AD39_0585 NZ_JJLH01000007.1 Protein Homology CDS 350905 351333 . - 0 ID=cds-WP_000278505.1;Parent=gene-AD39_RS20505;Dbxref=GenBank:WP_000278505.1;Name=WP_000278505.1;gbkey=CDS;gene=uspG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308673.1;locus_tag=AD39_RS20505;product=universal stress protein UspG;protein_id=WP_000278505.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 351554 352792 . + . ID=gene-AD39_RS20500;Name=ybdR;gbkey=Gene;gene=ybdR;gene_biotype=protein_coding;locus_tag=AD39_RS20500;old_locus_tag=AD39_0586 NZ_JJLH01000007.1 Protein Homology CDS 351554 352792 . + 0 ID=cds-WP_000646150.1;Parent=gene-AD39_RS20500;Dbxref=GenBank:WP_000646150.1;Name=WP_000646150.1;Ontology_term=GO:0008270,GO:0016616,GO:0030554;gbkey=CDS;gene=ybdR;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,adenyl nucleotide binding|0030554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308674.1;locus_tag=AD39_RS20500;product=zinc-dependent alcohol dehydrogenase;protein_id=WP_000646150.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 352796 352885 . - . ID=gene-AD39_RS29940;Name=yldA;gbkey=Gene;gene=yldA;gene_biotype=protein_coding;locus_tag=AD39_RS29940;old_locus_tag=AD39_0587 NZ_JJLH01000007.1 Protein Homology CDS 352796 352885 . - 0 ID=cds-WP_000796528.1;Parent=gene-AD39_RS29940;Dbxref=GenBank:WP_000796528.1;Name=WP_000796528.1;gbkey=CDS;gene=yldA;inference=COORDINATES: protein motif:HMM:NF041476.1;locus_tag=AD39_RS29940;product=small membrane protein YldA;protein_id=WP_000796528.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 353023 353433 . - . ID=gene-AD39_RS20490;Name=rnk;gbkey=Gene;gene=rnk;gene_biotype=protein_coding;locus_tag=AD39_RS20490;old_locus_tag=AD39_0588 NZ_JJLH01000007.1 Protein Homology CDS 353023 353433 . - 0 ID=cds-WP_000089731.1;Parent=gene-AD39_RS20490;Dbxref=GenBank:WP_000089731.1;Name=WP_000089731.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=rnk;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308676.1;locus_tag=AD39_RS20490;product=nucleoside diphosphate kinase regulator;protein_id=WP_000089731.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 353663 354469 . - . ID=gene-AD39_RS20485;Name=rna;gbkey=Gene;gene=rna;gene_biotype=protein_coding;locus_tag=AD39_RS20485;old_locus_tag=AD39_0589 NZ_JJLH01000007.1 Protein Homology CDS 353663 354469 . - 0 ID=cds-WP_001299576.1;Parent=gene-AD39_RS20485;Dbxref=GenBank:WP_001299576.1;Name=WP_001299576.1;gbkey=CDS;gene=rna;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415144.1;locus_tag=AD39_RS20485;product=ribonuclease I;protein_id=WP_001299576.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 354583 356046 . - . ID=gene-AD39_RS20480;Name=citT;gbkey=Gene;gene=citT;gene_biotype=protein_coding;locus_tag=AD39_RS20480;old_locus_tag=AD39_0590 NZ_JJLH01000007.1 Protein Homology CDS 354583 356046 . - 0 ID=cds-WP_001432638.1;Parent=gene-AD39_RS20480;Dbxref=GenBank:WP_001432638.1;Name=WP_001432638.1;gbkey=CDS;gene=citT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308678.1;locus_tag=AD39_RS20480;product=citrate/succinate antiporter CitT;protein_id=WP_001432638.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 356097 356975 . - . ID=gene-AD39_RS20475;Name=citG;gbkey=Gene;gene=citG;gene_biotype=protein_coding;locus_tag=AD39_RS20475;old_locus_tag=AD39_0591 NZ_JJLH01000007.1 Protein Homology CDS 356097 356975 . - 0 ID=cds-WP_032287494.1;Parent=gene-AD39_RS20475;Dbxref=GenBank:WP_032287494.1;Name=WP_032287494.1;gbkey=CDS;gene=citG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415146.1;locus_tag=AD39_RS20475;product=triphosphoribosyl-dephospho-CoA synthase CitG;protein_id=WP_032287494.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 356950 357501 . - . ID=gene-AD39_RS20470;Name=citX;gbkey=Gene;gene=citX;gene_biotype=protein_coding;locus_tag=AD39_RS20470;old_locus_tag=AD39_0592 NZ_JJLH01000007.1 Protein Homology CDS 356950 357501 . - 0 ID=cds-WP_000550422.1;Parent=gene-AD39_RS20470;Dbxref=GenBank:WP_000550422.1;Name=WP_000550422.1;Ontology_term=GO:0051191,GO:0050519;gbkey=CDS;gene=citX;go_function=holo-citrate lyase synthase activity|0050519||IEA;go_process=prosthetic group biosynthetic process|0051191||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308680.1;locus_tag=AD39_RS20470;product=citrate lyase holo-[acyl-carrier protein] synthase;protein_id=WP_000550422.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 357505 359037 . - . ID=gene-AD39_RS20465;Name=citF;gbkey=Gene;gene=citF;gene_biotype=protein_coding;locus_tag=AD39_RS20465;old_locus_tag=AD39_0593 NZ_JJLH01000007.1 Protein Homology CDS 357505 359037 . - 0 ID=cds-WP_000192245.1;Parent=gene-AD39_RS20465;Dbxref=GenBank:WP_000192245.1;Name=WP_000192245.1;Ontology_term=GO:0006113,GO:0008814,GO:0008815,GO:0009346;gbkey=CDS;gene=citF;go_component=ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate CoA-transferase activity|0008814||IEA,citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415148.1;locus_tag=AD39_RS20465;product=citrate lyase subunit alpha;protein_id=WP_000192245.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 359048 359956 . - . ID=gene-AD39_RS20460;Name=citE;gbkey=Gene;gene=citE;gene_biotype=protein_coding;locus_tag=AD39_RS20460;old_locus_tag=AD39_0594 NZ_JJLH01000007.1 Protein Homology CDS 359048 359956 . - 0 ID=cds-WP_000622357.1;Parent=gene-AD39_RS20460;Dbxref=GenBank:WP_000622357.1;Name=WP_000622357.1;Ontology_term=GO:0006084,GO:0006113,GO:0008815,GO:0005737,GO:0009346;gbkey=CDS;gene=citE;go_component=cytoplasm|0005737||IEA,ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate (pro-3S)-lyase activity|0008815||IEA;go_process=acetyl-CoA metabolic process|0006084||IEA,fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415149.4;locus_tag=AD39_RS20460;product=citrate (pro-3S)-lyase subunit beta;protein_id=WP_000622357.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 359953 360249 . - . ID=gene-AD39_RS20455;Name=citD;gbkey=Gene;gene=citD;gene_biotype=protein_coding;locus_tag=AD39_RS20455;old_locus_tag=AD39_0595 NZ_JJLH01000007.1 Protein Homology CDS 359953 360249 . - 0 ID=cds-WP_000700703.1;Parent=gene-AD39_RS20455;Dbxref=GenBank:WP_000700703.1;Name=WP_000700703.1;Ontology_term=GO:0006113,GO:0008815,GO:0005737,GO:0009346;gbkey=CDS;gene=citD;go_component=cytoplasm|0005737||IEA,ATP-independent citrate lyase complex|0009346||IEA;go_function=citrate (pro-3S)-lyase activity|0008815||IEA;go_process=fermentation|0006113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308683.1;locus_tag=AD39_RS20455;product=citrate lyase acyl carrier protein;protein_id=WP_000700703.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 360264 361322 . - . ID=gene-AD39_RS20450;Name=citC;gbkey=Gene;gene=citC;gene_biotype=protein_coding;locus_tag=AD39_RS20450;old_locus_tag=AD39_0596 NZ_JJLH01000007.1 Protein Homology CDS 360264 361322 . - 0 ID=cds-WP_000467705.1;Parent=gene-AD39_RS20450;Dbxref=GenBank:WP_000467705.1;Name=WP_000467705.1;Ontology_term=GO:0006101,GO:0008771;gbkey=CDS;gene=citC;go_function=[citrate (pro-3S)-lyase] ligase activity|0008771||IEA;go_process=citrate metabolic process|0006101||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415151.4;locus_tag=AD39_RS20450;product=[citrate (pro-3S)-lyase] ligase;protein_id=WP_000467705.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 361702 363360 . + . ID=gene-AD39_RS20445;Name=dpiB;gbkey=Gene;gene=dpiB;gene_biotype=protein_coding;locus_tag=AD39_RS20445;old_locus_tag=AD39_0597 NZ_JJLH01000007.1 Protein Homology CDS 361702 363360 . + 0 ID=cds-WP_000939766.1;Parent=gene-AD39_RS20445;Dbxref=GenBank:WP_000939766.1;Name=WP_000939766.1;Ontology_term=GO:0000160,GO:0000155;gbkey=CDS;gene=dpiB;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308685.1;locus_tag=AD39_RS20445;product=sensor histidine kinase DpiB;protein_id=WP_000939766.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 363329 364009 . + . ID=gene-AD39_RS20440;Name=dpiA;gbkey=Gene;gene=dpiA;gene_biotype=protein_coding;gene_synonym=citB;locus_tag=AD39_RS20440;old_locus_tag=AD39_0598 NZ_JJLH01000007.1 Protein Homology CDS 363329 364009 . + 0 ID=cds-WP_000126500.1;Parent=gene-AD39_RS20440;Dbxref=GenBank:WP_000126500.1;Name=WP_000126500.1;gbkey=CDS;gene=dpiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308686.1;locus_tag=AD39_RS20440;product=two-component response regulator DpiA;protein_id=WP_000126500.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 364050 365435 . - . ID=gene-AD39_RS20435;Name=dcuC;gbkey=Gene;gene=dcuC;gene_biotype=protein_coding;locus_tag=AD39_RS20435;old_locus_tag=AD39_0599 NZ_JJLH01000007.1 Protein Homology CDS 364050 365435 . - 0 ID=cds-WP_000955063.1;Parent=gene-AD39_RS20435;Dbxref=GenBank:WP_000955063.1;Name=WP_000955063.1;Ontology_term=GO:0015740,GO:0015556;gbkey=CDS;gene=dcuC;go_function=C4-dicarboxylate transmembrane transporter activity|0015556||IEA;go_process=C4-dicarboxylate transport|0015740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308687.1;locus_tag=AD39_RS20435;product=anaerobic C4-dicarboxylate transporter DcuC;protein_id=WP_000955063.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 366023 366583 . + . ID=gene-AD39_RS20430;Name=pagP;gbkey=Gene;gene=pagP;gene_biotype=protein_coding;locus_tag=AD39_RS20430;old_locus_tag=AD39_0602 NZ_JJLH01000007.1 Protein Homology CDS 366023 366583 . + 0 ID=cds-WP_001314557.1;Parent=gene-AD39_RS20430;Dbxref=GenBank:WP_001314557.1;Name=WP_001314557.1;gbkey=CDS;gene=pagP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415155.1;locus_tag=AD39_RS20430;product=lipid IV(A) palmitoyltransferase PagP;protein_id=WP_001314557.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 366758 366967 . + . ID=gene-AD39_RS20425;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;gene_synonym=gicA,msmC;locus_tag=AD39_RS20425;old_locus_tag=AD39_0603 NZ_JJLH01000007.1 Protein Homology CDS 366758 366967 . + 0 ID=cds-WP_000034825.1;Parent=gene-AD39_RS20425;Dbxref=GenBank:WP_000034825.1;Name=WP_000034825.1;Ontology_term=GO:0031564,GO:0001072,GO:0003697,GO:0003723;gbkey=CDS;gene=cspE;go_function=transcription antitermination factor activity%2C RNA binding|0001072||IEA,single-stranded DNA binding|0003697||IEA,RNA binding|0003723||IEA;go_process=transcription antitermination|0031564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308689.1;locus_tag=AD39_RS20425;product=transcription antiterminator/RNA stability regulator CspE;protein_id=WP_000034825.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 367022 367405 . - . ID=gene-AD39_RS20420;Name=crcB;gbkey=Gene;gene=crcB;gene_biotype=protein_coding;locus_tag=AD39_RS20420;old_locus_tag=AD39_0604 NZ_JJLH01000007.1 Protein Homology CDS 367022 367405 . - 0 ID=cds-WP_000939738.1;Parent=gene-AD39_RS20420;Dbxref=GenBank:WP_000939738.1;Name=WP_000939738.1;Ontology_term=GO:0016020;gbkey=CDS;gene=crcB;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308690.1;locus_tag=AD39_RS20420;product=fluoride efflux transporter CrcB;protein_id=WP_000939738.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 367498 368286 . + . ID=gene-AD39_RS20415;Name=AD39_RS20415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS20415;old_locus_tag=AD39_0605 NZ_JJLH01000007.1 Protein Homology CDS 367498 368286 . + 0 ID=cds-WP_000959109.1;Parent=gene-AD39_RS20415;Dbxref=GenBank:WP_000959109.1;Name=WP_000959109.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308691.1;locus_tag=AD39_RS20415;product=deaminated glutathione amidase;protein_id=WP_000959109.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 368415 368618 . + . ID=gene-AD39_RS20410;Name=tatE;gbkey=Gene;gene=tatE;gene_biotype=protein_coding;locus_tag=AD39_RS20410;old_locus_tag=AD39_0606 NZ_JJLH01000007.1 Protein Homology CDS 368415 368618 . + 0 ID=cds-WP_000503931.1;Parent=gene-AD39_RS20410;Dbxref=GenBank:WP_000503931.1;Name=WP_000503931.1;gbkey=CDS;gene=tatE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308692.1;locus_tag=AD39_RS20410;product=twin-arginine translocase subunit TatE;protein_id=WP_000503931.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 368719 369684 . - . ID=gene-AD39_RS20405;Name=lipA;gbkey=Gene;gene=lipA;gene_biotype=protein_coding;locus_tag=AD39_RS20405;old_locus_tag=AD39_0607 NZ_JJLH01000007.1 Protein Homology CDS 368719 369684 . - 0 ID=cds-WP_000042632.1;Parent=gene-AD39_RS20405;Dbxref=GenBank:WP_000042632.1;Name=WP_000042632.1;Ontology_term=GO:0009107,GO:0016992,GO:0051539,GO:1904047;gbkey=CDS;gene=lipA;go_function=lipoate synthase activity|0016992||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=lipoate biosynthetic process|0009107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904980.1;locus_tag=AD39_RS20405;product=lipoyl synthase;protein_id=WP_000042632.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 369893 370846 . - . ID=gene-AD39_RS20400;Name=ybeF;gbkey=Gene;gene=ybeF;gene_biotype=protein_coding;locus_tag=AD39_RS20400;old_locus_tag=AD39_0608 NZ_JJLH01000007.1 Protein Homology CDS 369893 370846 . - 0 ID=cds-WP_032283044.1;Parent=gene-AD39_RS20400;Dbxref=GenBank:WP_032283044.1;Name=WP_032283044.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ybeF;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415162.4;locus_tag=AD39_RS20400;product=YbeF family transcriptional regulator;protein_id=WP_032283044.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 371105 371746 . - . ID=gene-AD39_RS20395;Name=lipB;gbkey=Gene;gene=lipB;gene_biotype=protein_coding;locus_tag=AD39_RS20395;old_locus_tag=AD39_0609 NZ_JJLH01000007.1 Protein Homology CDS 371105 371746 . - 0 ID=cds-WP_000284027.1;Parent=gene-AD39_RS20395;Dbxref=GenBank:WP_000284027.1;Name=WP_000284027.1;Ontology_term=GO:0009249,GO:0033819;gbkey=CDS;gene=lipB;go_function=lipoyl(octanoyl) transferase activity|0033819||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415163.2;locus_tag=AD39_RS20395;product=lipoyl(octanoyl) transferase LipB;protein_id=WP_000284027.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 371847 372110 . - . ID=gene-AD39_RS20390;Name=ybeD;gbkey=Gene;gene=ybeD;gene_biotype=protein_coding;locus_tag=AD39_RS20390;old_locus_tag=AD39_0610 NZ_JJLH01000007.1 Protein Homology CDS 371847 372110 . - 0 ID=cds-WP_000850550.1;Parent=gene-AD39_RS20390;Dbxref=GenBank:WP_000850550.1;Name=WP_000850550.1;gbkey=CDS;gene=ybeD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308696.1;locus_tag=AD39_RS20390;product=DUF493 family protein YbeD;protein_id=WP_000850550.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 372221 373432 . - . ID=gene-AD39_RS20385;Name=dacA;gbkey=Gene;gene=dacA;gene_biotype=protein_coding;locus_tag=AD39_RS20385;old_locus_tag=AD39_0611 NZ_JJLH01000007.1 Protein Homology CDS 372221 373432 . - 0 ID=cds-WP_001092082.1;Parent=gene-AD39_RS20385;Dbxref=GenBank:WP_001092082.1;Name=WP_001092082.1;Ontology_term=GO:0006508,GO:0009002;gbkey=CDS;gene=dacA;go_function=serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415165.1;locus_tag=AD39_RS20385;product=D-alanyl-D-alanine carboxypeptidase DacA;protein_id=WP_001092082.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 373572 374660 . - . ID=gene-AD39_RS20380;Name=rlpA;gbkey=Gene;gene=rlpA;gene_biotype=protein_coding;locus_tag=AD39_RS20380;old_locus_tag=AD39_0613 NZ_JJLH01000007.1 Protein Homology CDS 373572 374660 . - 0 ID=cds-WP_001481395.1;Parent=gene-AD39_RS20380;Dbxref=GenBank:WP_001481395.1;Name=WP_001481395.1;Ontology_term=GO:0042834;gbkey=CDS;gene=rlpA;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415166.1;locus_tag=AD39_RS20380;product=endolytic peptidoglycan transglycosylase RlpA;protein_id=WP_001481395.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 374671 375783 . - . ID=gene-AD39_RS20375;Name=mrdB;gbkey=Gene;gene=mrdB;gene_biotype=protein_coding;gene_synonym=rodA;locus_tag=AD39_RS20375;old_locus_tag=AD39_0614 NZ_JJLH01000007.1 Protein Homology CDS 374671 375783 . - 0 ID=cds-WP_000131719.1;Parent=gene-AD39_RS20375;Dbxref=GenBank:WP_000131719.1;Name=WP_000131719.1;Note=rod shape-determining protein RodA;gbkey=CDS;gene=mrdB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004885876.1;locus_tag=AD39_RS20375;product=peptidoglycan glycosyltransferase MrdB;protein_id=WP_000131719.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 375786 377687 . - . ID=gene-AD39_RS20370;Name=mrdA;gbkey=Gene;gene=mrdA;gene_biotype=protein_coding;locus_tag=AD39_RS20370;old_locus_tag=AD39_0615 NZ_JJLH01000007.1 Protein Homology CDS 375786 377687 . - 0 ID=cds-WP_000776191.1;Parent=gene-AD39_RS20370;Dbxref=GenBank:WP_000776191.1;Name=WP_000776191.1;Ontology_term=GO:0009252,GO:0008658,GO:0009002,GO:0016020;gbkey=CDS;gene=mrdA;go_component=membrane|0016020||IEA;go_function=penicillin binding|0008658||IEA,serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308700.1;locus_tag=AD39_RS20370;product=peptidoglycan DD-transpeptidase MrdA;protein_id=WP_000776191.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 377718 378185 . - . ID=gene-AD39_RS20365;Name=rlmH;gbkey=Gene;gene=rlmH;gene_biotype=protein_coding;locus_tag=AD39_RS20365;old_locus_tag=AD39_0616 NZ_JJLH01000007.1 Protein Homology CDS 377718 378185 . - 0 ID=cds-WP_000776104.1;Parent=gene-AD39_RS20365;Dbxref=GenBank:WP_000776104.1;Name=WP_000776104.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;gene=rlmH;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016245807.1;locus_tag=AD39_RS20365;product=23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH;protein_id=WP_000776104.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 378189 378506 . - . ID=gene-AD39_RS20360;Name=rsfS;gbkey=Gene;gene=rsfS;gene_biotype=protein_coding;locus_tag=AD39_RS20360;old_locus_tag=AD39_0617 NZ_JJLH01000007.1 Protein Homology CDS 378189 378506 . - 0 ID=cds-WP_001161664.1;Parent=gene-AD39_RS20360;Dbxref=GenBank:WP_001161664.1;Name=WP_001161664.1;Ontology_term=GO:0017148,GO:0043022;gbkey=CDS;gene=rsfS;go_function=ribosome binding|0043022||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007373852.1;locus_tag=AD39_RS20360;product=ribosome silencing factor;protein_id=WP_001161664.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 378766 379377 . - . ID=gene-AD39_RS20355;Name=cobC;gbkey=Gene;gene=cobC;gene_biotype=protein_coding;locus_tag=AD39_RS20355;old_locus_tag=AD39_0618 NZ_JJLH01000007.1 Protein Homology CDS 378766 379377 . - 0 ID=cds-WP_001241865.1;Parent=gene-AD39_RS20355;Dbxref=GenBank:WP_001241865.1;Name=WP_001241865.1;Ontology_term=GO:0009236,GO:0043755;gbkey=CDS;gene=cobC;go_function=alpha-ribazole phosphatase activity|0043755||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308703.1;locus_tag=AD39_RS20355;product=adenosylcobalamin/alpha-ribazole phosphatase;protein_id=WP_001241865.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 379401 380042 . - . ID=gene-AD39_RS20350;Name=nadD;gbkey=Gene;gene=nadD;gene_biotype=protein_coding;locus_tag=AD39_RS20350;old_locus_tag=AD39_0619 NZ_JJLH01000007.1 Protein Homology CDS 379401 380042 . - 0 ID=cds-WP_000838889.1;Parent=gene-AD39_RS20350;Dbxref=GenBank:WP_000838889.1;Name=WP_000838889.1;Ontology_term=GO:0009435,GO:0016779;gbkey=CDS;gene=nadD;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415172.1;locus_tag=AD39_RS20350;product=nicotinate-nucleotide adenylyltransferase;protein_id=WP_000838889.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 380044 381075 . - . ID=gene-AD39_RS20345;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=AD39_RS20345;old_locus_tag=AD39_0620 NZ_JJLH01000007.1 Protein Homology CDS 380044 381075 . - 0 ID=cds-WP_000620550.1;Parent=gene-AD39_RS20345;Dbxref=GenBank:WP_000620550.1;Name=WP_000620550.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887;gbkey=CDS;gene=holA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415173.1;locus_tag=AD39_RS20345;product=DNA polymerase III subunit delta;protein_id=WP_000620550.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 381075 381656 . - . ID=gene-AD39_RS20340;Name=lptE;gbkey=Gene;gene=lptE;gene_biotype=protein_coding;locus_tag=AD39_RS20340;old_locus_tag=AD39_0621 NZ_JJLH01000007.1 Protein Homology CDS 381075 381656 . - 0 ID=cds-WP_001512520.1;Parent=gene-AD39_RS20340;Dbxref=GenBank:WP_001512520.1;Name=WP_001512520.1;Ontology_term=GO:0043165,GO:0019867;gbkey=CDS;gene=lptE;go_component=outer membrane|0019867||IEA;go_process=Gram-negative-bacterium-type cell outer membrane assembly|0043165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415174.1;locus_tag=AD39_RS20340;product=LPS assembly lipoprotein LptE;protein_id=WP_001512520.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 381671 384253 . - . ID=gene-AD39_RS20335;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=AD39_RS20335;old_locus_tag=AD39_0622 NZ_JJLH01000007.1 Protein Homology CDS 381671 384253 . - 0 ID=cds-WP_001157890.1;Parent=gene-AD39_RS20335;Dbxref=GenBank:WP_001157890.1;Name=WP_001157890.1;Ontology_term=GO:0006429,GO:0000166,GO:0004823,GO:0005524;gbkey=CDS;gene=leuS;go_function=nucleotide binding|0000166||IEA,leucine-tRNA ligase activity|0004823||IEA,ATP binding|0005524||IEA;go_process=leucyl-tRNA aminoacylation|0006429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008456064.1;locus_tag=AD39_RS20335;product=leucine--tRNA ligase;protein_id=WP_001157890.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 384488 384970 . + . ID=gene-AD39_RS20330;Name=ybeL;gbkey=Gene;gene=ybeL;gene_biotype=protein_coding;locus_tag=AD39_RS20330;old_locus_tag=AD39_0623 NZ_JJLH01000007.1 Protein Homology CDS 384488 384970 . + 0 ID=cds-WP_001044880.1;Parent=gene-AD39_RS20330;Dbxref=GenBank:WP_001044880.1;Name=WP_001044880.1;gbkey=CDS;gene=ybeL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308708.1;locus_tag=AD39_RS20330;product=zinc ribbon-containing protein;protein_id=WP_001044880.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 385040 386017 . - . ID=gene-AD39_RS20325;Name=ybeQ;gbkey=Gene;gene=ybeQ;gene_biotype=protein_coding;locus_tag=AD39_RS20325;old_locus_tag=AD39_0624 NZ_JJLH01000007.1 Protein Homology CDS 385040 386017 . - 0 ID=cds-WP_000578183.1;Parent=gene-AD39_RS20325;Dbxref=GenBank:WP_000578183.1;Name=WP_000578183.1;gbkey=CDS;gene=ybeQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415177.4;locus_tag=AD39_RS20325;product=Sel1 family TPR-like repeat protein YbeQ;protein_id=WP_000578183.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 386181 386888 . + . ID=gene-AD39_RS20320;Name=ybeR;gbkey=Gene;gene=ybeR;gene_biotype=protein_coding;locus_tag=AD39_RS20320;old_locus_tag=AD39_0625 NZ_JJLH01000007.1 Protein Homology CDS 386181 386888 . + 0 ID=cds-WP_000367017.1;Parent=gene-AD39_RS20320;Dbxref=GenBank:WP_000367017.1;Name=WP_000367017.1;gbkey=CDS;gene=ybeR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415178.1;locus_tag=AD39_RS20320;product=DUF1266 domain-containing protein;protein_id=WP_000367017.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 386885 388312 . + . ID=gene-AD39_RS20315;Name=djlB;gbkey=Gene;gene=djlB;gene_biotype=protein_coding;locus_tag=AD39_RS20315;old_locus_tag=AD39_0626 NZ_JJLH01000007.1 Protein Homology CDS 386885 388312 . + 0 ID=cds-WP_032141763.1;Parent=gene-AD39_RS20315;Dbxref=GenBank:WP_032141763.1;Name=WP_032141763.1;gbkey=CDS;gene=djlB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308711.1;locus_tag=AD39_RS20315;product=J domain-containing protein;protein_id=WP_032141763.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 388322 388876 . - . ID=gene-AD39_RS20310;Name=ybeT;gbkey=Gene;gene=ybeT;gene_biotype=protein_coding;locus_tag=AD39_RS20310;old_locus_tag=AD39_0627 NZ_JJLH01000007.1 Protein Homology CDS 388322 388876 . - 0 ID=cds-WP_001035666.1;Parent=gene-AD39_RS20310;Dbxref=GenBank:WP_001035666.1;Name=WP_001035666.1;Ontology_term=GO:0005515;gbkey=CDS;gene=ybeT;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308712.1;locus_tag=AD39_RS20310;product=tetratricopeptide repeat protein;protein_id=WP_001035666.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 388978 389685 . + . ID=gene-AD39_RS20305;Name=ybeU;gbkey=Gene;gene=ybeU;gene_biotype=protein_coding;locus_tag=AD39_RS20305;old_locus_tag=AD39_0628 NZ_JJLH01000007.1 Protein Homology CDS 388978 389685 . + 0 ID=cds-WP_001030930.1;Parent=gene-AD39_RS20305;Dbxref=GenBank:WP_001030930.1;Name=WP_001030930.1;gbkey=CDS;gene=ybeU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415181.1;locus_tag=AD39_RS20305;product=DUF1266 domain-containing protein;protein_id=WP_001030930.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 389682 391133 . + . ID=gene-AD39_RS20300;Name=djlC;gbkey=Gene;gene=djlC;gene_biotype=protein_coding;locus_tag=AD39_RS20300;old_locus_tag=AD39_0629 NZ_JJLH01000007.1 Protein Homology CDS 389682 391133 . + 0 ID=cds-WP_001498877.1;Parent=gene-AD39_RS20300;Dbxref=GenBank:WP_001498877.1;Name=WP_001498877.1;gbkey=CDS;gene=djlC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706561.1;locus_tag=AD39_RS20300;product=co-chaperone DjlC;protein_id=WP_001498877.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 391193 392863 . - . ID=gene-AD39_RS20295;Name=hscC;gbkey=Gene;gene=hscC;gene_biotype=protein_coding;locus_tag=AD39_RS20295;old_locus_tag=AD39_0630 NZ_JJLH01000007.1 Protein Homology CDS 391193 392863 . - 0 ID=cds-WP_000367857.1;Parent=gene-AD39_RS20295;Dbxref=GenBank:WP_000367857.1;Name=WP_000367857.1;gbkey=CDS;gene=hscC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000367910.1;locus_tag=AD39_RS20295;product=molecular chaperone HscC;protein_id=WP_000367857.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 392947 393882 . - . ID=gene-AD39_RS20290;Name=rihA;gbkey=Gene;gene=rihA;gene_biotype=protein_coding;locus_tag=AD39_RS20290;old_locus_tag=AD39_0631 NZ_JJLH01000007.1 Protein Homology CDS 392947 393882 . - 0 ID=cds-WP_001207503.1;Parent=gene-AD39_RS20290;Dbxref=GenBank:WP_001207503.1;Name=WP_001207503.1;Ontology_term=GO:0006206,GO:0050263;gbkey=CDS;gene=rihA;go_function=ribosylpyrimidine nucleosidase activity|0050263||IEA;go_process=pyrimidine nucleobase metabolic process|0006206||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308717.1;locus_tag=AD39_RS20290;product=pyrimidine-specific ribonucleoside hydrolase RihA;protein_id=WP_001207503.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 394000 394725 . - . ID=gene-AD39_RS20285;Name=gltL;gbkey=Gene;gene=gltL;gene_biotype=protein_coding;locus_tag=AD39_RS20285;old_locus_tag=AD39_0632 NZ_JJLH01000007.1 Protein Homology CDS 394000 394725 . - 0 ID=cds-WP_000631384.1;Parent=gene-AD39_RS20285;Dbxref=GenBank:WP_000631384.1;Name=WP_000631384.1;gbkey=CDS;gene=gltL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020245804.1;locus_tag=AD39_RS20285;product=glutamate/aspartate ABC transporter ATP-binding protein GltL;protein_id=WP_000631384.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 394725 395399 . - . ID=gene-AD39_RS20280;Name=gltK;gbkey=Gene;gene=gltK;gene_biotype=protein_coding;locus_tag=AD39_RS20280;old_locus_tag=AD39_0633 NZ_JJLH01000007.1 Protein Homology CDS 394725 395399 . - 0 ID=cds-WP_000272824.1;Parent=gene-AD39_RS20280;Dbxref=GenBank:WP_000272824.1;Name=WP_000272824.1;gbkey=CDS;gene=gltK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308719.1;locus_tag=AD39_RS20280;product=glutamate/aspartate ABC transporter permease GltK;protein_id=WP_000272824.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 395399 396139 . - . ID=gene-AD39_RS20275;Name=gltJ;gbkey=Gene;gene=gltJ;gene_biotype=protein_coding;locus_tag=AD39_RS20275;old_locus_tag=AD39_0634 NZ_JJLH01000007.1 Protein Homology CDS 395399 396139 . - 0 ID=cds-WP_000020941.1;Parent=gene-AD39_RS20275;Dbxref=GenBank:WP_000020941.1;Name=WP_000020941.1;gbkey=CDS;gene=gltJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415187.1;locus_tag=AD39_RS20275;product=glutamate/aspartate ABC transporter permease GltJ;protein_id=WP_000020941.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 396309 397217 . - . ID=gene-AD39_RS20270;Name=gltI;gbkey=Gene;gene=gltI;gene_biotype=protein_coding;locus_tag=AD39_RS20270;old_locus_tag=AD39_0635 NZ_JJLH01000007.1 Protein Homology CDS 396309 397217 . - 0 ID=cds-WP_003953063.1;Parent=gene-AD39_RS20270;Dbxref=GenBank:WP_003953063.1;Name=WP_003953063.1;gbkey=CDS;gene=gltI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308721.1;locus_tag=AD39_RS20270;product=glutamate/aspartate ABC transporter substrate-binding protein GltI;protein_id=WP_003953063.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 397672 399549 . + . ID=gene-AD39_RS20265;Name=AD39_RS20265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS20265;old_locus_tag=AD39_0637 NZ_JJLH01000007.1 Protein Homology CDS 397672 399549 . + 0 ID=cds-WP_032283048.1;Parent=gene-AD39_RS20265;Dbxref=GenBank:WP_032283048.1;Name=WP_032283048.1;Ontology_term=GO:0004252,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001276742.1;locus_tag=AD39_RS20265;product=rhomboid family intramembrane serine protease;protein_id=WP_032283048.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 399627 401165 . - . ID=gene-AD39_RS20260;Name=lnt;gbkey=Gene;gene=lnt;gene_biotype=protein_coding;locus_tag=AD39_RS20260;old_locus_tag=AD39_0638 NZ_JJLH01000007.1 Protein Homology CDS 399627 401165 . - 0 ID=cds-WP_000853031.1;Parent=gene-AD39_RS20260;Dbxref=GenBank:WP_000853031.1;Name=WP_000853031.1;Ontology_term=GO:0042158,GO:0016410,GO:0016020;gbkey=CDS;gene=lnt;go_component=membrane|0016020||IEA;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipoprotein biosynthetic process|0042158||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415190.1;locus_tag=AD39_RS20260;product=apolipoprotein N-acyltransferase;protein_id=WP_000853031.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 401190 402068 . - . ID=gene-AD39_RS20255;Name=corC;gbkey=Gene;gene=corC;gene_biotype=protein_coding;locus_tag=AD39_RS20255;old_locus_tag=AD39_0639 NZ_JJLH01000007.1 Protein Homology CDS 401190 402068 . - 0 ID=cds-WP_001278605.1;Parent=gene-AD39_RS20255;Dbxref=GenBank:WP_001278605.1;Name=WP_001278605.1;Note=CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter (CNNM) family%2C and was characterized as belonging to a set of three proteins%2C at least one of which must be present for CorA to function.;Ontology_term=GO:0050660;gbkey=CDS;gene=corC;go_function=flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308723.1;locus_tag=AD39_RS20255;product=CNNM family magnesium/cobalt transport protein CorC;protein_id=WP_001278605.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 402158 402625 . - . ID=gene-AD39_RS20250;Name=ybeY;gbkey=Gene;gene=ybeY;gene_biotype=protein_coding;locus_tag=AD39_RS20250;old_locus_tag=AD39_0640 NZ_JJLH01000007.1 Protein Homology CDS 402158 402625 . - 0 ID=cds-WP_000084469.1;Parent=gene-AD39_RS20250;Dbxref=GenBank:WP_000084469.1;Name=WP_000084469.1;Ontology_term=GO:0042254,GO:0004540,GO:0046872;gbkey=CDS;gene=ybeY;go_function=RNA nuclease activity|0004540||IEA,metal ion binding|0046872||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014169133.1;locus_tag=AD39_RS20250;product=rRNA maturation RNase YbeY;protein_id=WP_000084469.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 402622 403662 . - . ID=gene-AD39_RS20245;Name=ybeZ;gbkey=Gene;gene=ybeZ;gene_biotype=protein_coding;locus_tag=AD39_RS20245;old_locus_tag=AD39_0641 NZ_JJLH01000007.1 Protein Homology CDS 402622 403662 . - 0 ID=cds-WP_001018040.1;Parent=gene-AD39_RS20245;Dbxref=GenBank:WP_001018040.1;Name=WP_001018040.1;Ontology_term=GO:0005524;gbkey=CDS;gene=ybeZ;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415193.2;locus_tag=AD39_RS20245;product=PhoH family protein;protein_id=WP_001018040.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 403815 405239 . - . ID=gene-AD39_RS20240;Name=miaB;gbkey=Gene;gene=miaB;gene_biotype=protein_coding;locus_tag=AD39_RS20240;old_locus_tag=AD39_0642 NZ_JJLH01000007.1 Protein Homology CDS 403815 405239 . - 0 ID=cds-WP_000162740.1;Parent=gene-AD39_RS20240;Dbxref=GenBank:WP_000162740.1;Name=WP_000162740.1;Ontology_term=GO:0006400,GO:0016782,GO:0051539,GO:1904047;gbkey=CDS;gene=miaB;go_function=transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308726.1;locus_tag=AD39_RS20240;product=tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB;protein_id=WP_000162740.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 405385 406560 . + . ID=gene-AD39_RS20235;Name=ubiF;gbkey=Gene;gene=ubiF;gene_biotype=protein_coding;locus_tag=AD39_RS20235;old_locus_tag=AD39_0643 NZ_JJLH01000007.1 Protein Homology CDS 405385 406560 . + 0 ID=cds-WP_000184573.1;Parent=gene-AD39_RS20235;Dbxref=GenBank:WP_000184573.1;Name=WP_000184573.1;Ontology_term=GO:0006744,GO:0016709;gbkey=CDS;gene=ubiF;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706550.2;locus_tag=AD39_RS20235;product=3-demethoxyubiquinol 3-hydroxylase;protein_id=WP_000184573.1;transl_table=11 NZ_JJLH01000007.1 RefSeq gene 406714 406788 . - . ID=gene-AD39_RS20230;Name=AD39_RS20230;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20230;old_locus_tag=AD39_0644 NZ_JJLH01000007.1 tRNAscan-SE tRNA 406714 406788 . - . ID=rna-AD39_RS20230;Parent=gene-AD39_RS20230;anticodon=(pos:complement(406754..406756));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20230;product=tRNA-Gln NZ_JJLH01000007.1 tRNAscan-SE exon 406714 406788 . - . ID=exon-AD39_RS20230-1;Parent=rna-AD39_RS20230;anticodon=(pos:complement(406754..406756));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20230;product=tRNA-Gln NZ_JJLH01000007.1 RefSeq gene 406826 406900 . - . ID=gene-AD39_RS20225;Name=AD39_RS20225;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20225;old_locus_tag=AD39_0645 NZ_JJLH01000007.1 tRNAscan-SE tRNA 406826 406900 . - . ID=rna-AD39_RS20225;Parent=gene-AD39_RS20225;anticodon=(pos:complement(406866..406868));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20225;product=tRNA-Gln NZ_JJLH01000007.1 tRNAscan-SE exon 406826 406900 . - . ID=exon-AD39_RS20225-1;Parent=rna-AD39_RS20225;anticodon=(pos:complement(406866..406868));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20225;product=tRNA-Gln NZ_JJLH01000007.1 RefSeq gene 406938 407012 . - . ID=gene-AD39_RS20220;Name=AD39_RS20220;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20220;old_locus_tag=AD39_0646 NZ_JJLH01000007.1 tRNAscan-SE tRNA 406938 407012 . - . ID=rna-AD39_RS20220;Parent=gene-AD39_RS20220;anticodon=(pos:complement(406978..406980));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20220;product=tRNA-Gln NZ_JJLH01000007.1 tRNAscan-SE exon 406938 407012 . - . ID=exon-AD39_RS20220-1;Parent=rna-AD39_RS20220;anticodon=(pos:complement(406978..406980));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20220;product=tRNA-Gln NZ_JJLH01000007.1 RefSeq gene 407050 407124 . - . ID=gene-AD39_RS20215;Name=AD39_RS20215;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20215;old_locus_tag=AD39_0647 NZ_JJLH01000007.1 tRNAscan-SE tRNA 407050 407124 . - . ID=rna-AD39_RS20215;Parent=gene-AD39_RS20215;anticodon=(pos:complement(407090..407092));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20215;product=tRNA-Gln NZ_JJLH01000007.1 tRNAscan-SE exon 407050 407124 . - . ID=exon-AD39_RS20215-1;Parent=rna-AD39_RS20215;anticodon=(pos:complement(407090..407092));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20215;product=tRNA-Gln NZ_JJLH01000007.1 RefSeq gene 407173 407249 . - . ID=gene-AD39_RS20210;Name=AD39_RS20210;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20210;old_locus_tag=AD39_0648 NZ_JJLH01000007.1 tRNAscan-SE tRNA 407173 407249 . - . ID=rna-AD39_RS20210;Parent=gene-AD39_RS20210;anticodon=(pos:complement(407213..407215));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20210;product=tRNA-Met NZ_JJLH01000007.1 tRNAscan-SE exon 407173 407249 . - . ID=exon-AD39_RS20210-1;Parent=rna-AD39_RS20210;anticodon=(pos:complement(407213..407215));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20210;product=tRNA-Met ##sequence-region NZ_JJLH01000008.1 1 689 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000008.1 RefSeq region 1 689 . + . ID=NZ_JJLH01000008.1:1..689;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000008.1 RefSeq gene 1 344 . + . ID=gene-AD39_RS20200;Name=AD39_RS20200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS20200;old_locus_tag=AD39_0650;partial=true;start_range=.,1 NZ_JJLH01000008.1 Protein Homology CDS 1 344 . + 2 ID=cds-WP_032215150.1;Parent=gene-AD39_RS20200;Dbxref=GenBank:WP_032215150.1;Name=WP_032215150.1;Ontology_term=GO:0071949;gbkey=CDS;go_function=FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308727.1;locus_tag=AD39_RS20200;partial=true;product=FAD-dependent monooxygenase;protein_id=WP_032215150.1;start_range=.,1;transl_table=11 NZ_JJLH01000008.1 RefSeq gene 498 572 . - . ID=gene-AD39_RS20195;Name=AD39_RS20195;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20195;old_locus_tag=AD39_0651 NZ_JJLH01000008.1 tRNAscan-SE tRNA 498 572 . - . ID=rna-AD39_RS20195;Parent=gene-AD39_RS20195;anticodon=(pos:complement(538..540));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20195;product=tRNA-Gln NZ_JJLH01000008.1 tRNAscan-SE exon 498 572 . - . ID=exon-AD39_RS20195-1;Parent=rna-AD39_RS20195;anticodon=(pos:complement(538..540));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20195;product=tRNA-Gln NZ_JJLH01000008.1 RefSeq gene 621 689 . - . ID=gene-AD39_RS28855;Name=AD39_RS28855;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS28855;old_locus_tag=AD39_0652 NZ_JJLH01000008.1 tRNAscan-SE tRNA 621 689 . - . ID=rna-AD39_RS28855;Parent=gene-AD39_RS28855;anticodon=(pos:complement(661..663));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS28855;product=tRNA-Met NZ_JJLH01000008.1 tRNAscan-SE exon 621 689 . - . ID=exon-AD39_RS28855-1;Parent=rna-AD39_RS28855;anticodon=(pos:complement(661..663));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS28855;product=tRNA-Met ##sequence-region NZ_JJLH01000009.1 1 1447 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000009.1 RefSeq region 1 1447 . + . ID=NZ_JJLH01000009.1:1..1447;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000009.1 RefSeq gene 1 344 . + . ID=gene-AD39_RS20190;Name=AD39_RS20190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS20190;old_locus_tag=AD39_0653;partial=true;start_range=.,1 NZ_JJLH01000009.1 Protein Homology CDS 1 344 . + 2 ID=cds-WP_032215150.1-2;Parent=gene-AD39_RS20190;Dbxref=GenBank:WP_032215150.1;Name=WP_032215150.1;Ontology_term=GO:0071949;gbkey=CDS;go_function=FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308727.1;locus_tag=AD39_RS20190;partial=true;product=FAD-dependent monooxygenase;protein_id=WP_032215150.1;start_range=.,1;transl_table=11 NZ_JJLH01000009.1 RefSeq gene 498 572 . - . ID=gene-AD39_RS20185;Name=AD39_RS20185;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20185;old_locus_tag=AD39_0654 NZ_JJLH01000009.1 tRNAscan-SE tRNA 498 572 . - . ID=rna-AD39_RS20185;Parent=gene-AD39_RS20185;anticodon=(pos:complement(538..540));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20185;product=tRNA-Gln NZ_JJLH01000009.1 tRNAscan-SE exon 498 572 . - . ID=exon-AD39_RS20185-1;Parent=rna-AD39_RS20185;anticodon=(pos:complement(538..540));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20185;product=tRNA-Gln NZ_JJLH01000009.1 RefSeq gene 610 684 . - . ID=gene-AD39_RS20180;Name=AD39_RS20180;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20180;old_locus_tag=AD39_0655 NZ_JJLH01000009.1 tRNAscan-SE tRNA 610 684 . - . ID=rna-AD39_RS20180;Parent=gene-AD39_RS20180;anticodon=(pos:complement(650..652));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20180;product=tRNA-Gln NZ_JJLH01000009.1 tRNAscan-SE exon 610 684 . - . ID=exon-AD39_RS20180-1;Parent=rna-AD39_RS20180;anticodon=(pos:complement(650..652));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20180;product=tRNA-Gln NZ_JJLH01000009.1 RefSeq gene 733 809 . - . ID=gene-AD39_RS20175;Name=AD39_RS20175;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20175;old_locus_tag=AD39_0656 NZ_JJLH01000009.1 tRNAscan-SE tRNA 733 809 . - . ID=rna-AD39_RS20175;Parent=gene-AD39_RS20175;anticodon=(pos:complement(773..775));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20175;product=tRNA-Met NZ_JJLH01000009.1 tRNAscan-SE exon 733 809 . - . ID=exon-AD39_RS20175-1;Parent=rna-AD39_RS20175;anticodon=(pos:complement(773..775));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20175;product=tRNA-Met NZ_JJLH01000009.1 RefSeq gene 825 899 . - . ID=gene-AD39_RS20170;Name=AD39_RS20170;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20170;old_locus_tag=AD39_0657 NZ_JJLH01000009.1 tRNAscan-SE tRNA 825 899 . - . ID=rna-AD39_RS20170;Parent=gene-AD39_RS20170;anticodon=(pos:complement(865..867));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20170;product=tRNA-Gln NZ_JJLH01000009.1 tRNAscan-SE exon 825 899 . - . ID=exon-AD39_RS20170-1;Parent=rna-AD39_RS20170;anticodon=(pos:complement(865..867));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20170;product=tRNA-Gln NZ_JJLH01000009.1 RefSeq gene 923 1007 . - . ID=gene-AD39_RS20165;Name=AD39_RS20165;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20165;old_locus_tag=AD39_0658 NZ_JJLH01000009.1 tRNAscan-SE tRNA 923 1007 . - . ID=rna-AD39_RS20165;Parent=gene-AD39_RS20165;anticodon=(pos:complement(971..973));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20165;product=tRNA-Leu NZ_JJLH01000009.1 tRNAscan-SE exon 923 1007 . - . ID=exon-AD39_RS20165-1;Parent=rna-AD39_RS20165;anticodon=(pos:complement(971..973));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20165;product=tRNA-Leu NZ_JJLH01000009.1 RefSeq gene 1016 1092 . - . ID=gene-AD39_RS20160;Name=AD39_RS20160;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20160;old_locus_tag=AD39_0659 NZ_JJLH01000009.1 tRNAscan-SE tRNA 1016 1092 . - . ID=rna-AD39_RS20160;Parent=gene-AD39_RS20160;anticodon=(pos:complement(1056..1058));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20160;product=tRNA-Met NZ_JJLH01000009.1 tRNAscan-SE exon 1016 1092 . - . ID=exon-AD39_RS20160-1;Parent=rna-AD39_RS20160;anticodon=(pos:complement(1056..1058));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20160;product=tRNA-Met NZ_JJLH01000009.1 RefSeq gene 1108 1182 . - . ID=gene-AD39_RS20155;Name=AD39_RS20155;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20155;old_locus_tag=AD39_0660 NZ_JJLH01000009.1 tRNAscan-SE tRNA 1108 1182 . - . ID=rna-AD39_RS20155;Parent=gene-AD39_RS20155;anticodon=(pos:complement(1148..1150));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20155;product=tRNA-Gln NZ_JJLH01000009.1 tRNAscan-SE exon 1108 1182 . - . ID=exon-AD39_RS20155-1;Parent=rna-AD39_RS20155;anticodon=(pos:complement(1148..1150));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20155;product=tRNA-Gln NZ_JJLH01000009.1 RefSeq gene 1206 1290 . - . ID=gene-AD39_RS20150;Name=AD39_RS20150;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20150;old_locus_tag=AD39_0661 NZ_JJLH01000009.1 tRNAscan-SE tRNA 1206 1290 . - . ID=rna-AD39_RS20150;Parent=gene-AD39_RS20150;anticodon=(pos:complement(1254..1256));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20150;product=tRNA-Leu NZ_JJLH01000009.1 tRNAscan-SE exon 1206 1290 . - . ID=exon-AD39_RS20150-1;Parent=rna-AD39_RS20150;anticodon=(pos:complement(1254..1256));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20150;product=tRNA-Leu NZ_JJLH01000009.1 RefSeq gene 1299 1375 . - . ID=gene-AD39_RS20145;Name=AD39_RS20145;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20145;old_locus_tag=AD39_0662 NZ_JJLH01000009.1 tRNAscan-SE tRNA 1299 1375 . - . ID=rna-AD39_RS20145;Parent=gene-AD39_RS20145;anticodon=(pos:complement(1339..1341));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20145;product=tRNA-Met NZ_JJLH01000009.1 tRNAscan-SE exon 1299 1375 . - . ID=exon-AD39_RS20145-1;Parent=rna-AD39_RS20145;anticodon=(pos:complement(1339..1341));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20145;product=tRNA-Met ##sequence-region NZ_JJLH01000010.1 1 32718 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000010.1 RefSeq region 1 32718 . + . ID=NZ_JJLH01000010.1:1..32718;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000010.1 RefSeq gene 105 179 . - . ID=gene-AD39_RS20135;Name=AD39_RS20135;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20135;old_locus_tag=AD39_0664 NZ_JJLH01000010.1 tRNAscan-SE tRNA 105 179 . - . ID=rna-AD39_RS20135;Parent=gene-AD39_RS20135;anticodon=(pos:complement(145..147));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20135;product=tRNA-Gln NZ_JJLH01000010.1 tRNAscan-SE exon 105 179 . - . ID=exon-AD39_RS20135-1;Parent=rna-AD39_RS20135;anticodon=(pos:complement(145..147));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20135;product=tRNA-Gln NZ_JJLH01000010.1 RefSeq gene 228 304 . - . ID=gene-AD39_RS20130;Name=AD39_RS20130;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20130;old_locus_tag=AD39_0665 NZ_JJLH01000010.1 tRNAscan-SE tRNA 228 304 . - . ID=rna-AD39_RS20130;Parent=gene-AD39_RS20130;anticodon=(pos:complement(268..270));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20130;product=tRNA-Met NZ_JJLH01000010.1 tRNAscan-SE exon 228 304 . - . ID=exon-AD39_RS20130-1;Parent=rna-AD39_RS20130;anticodon=(pos:complement(268..270));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20130;product=tRNA-Met NZ_JJLH01000010.1 RefSeq gene 320 394 . - . ID=gene-AD39_RS20125;Name=AD39_RS20125;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20125;old_locus_tag=AD39_0666 NZ_JJLH01000010.1 tRNAscan-SE tRNA 320 394 . - . ID=rna-AD39_RS20125;Parent=gene-AD39_RS20125;anticodon=(pos:complement(360..362));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20125;product=tRNA-Gln NZ_JJLH01000010.1 tRNAscan-SE exon 320 394 . - . ID=exon-AD39_RS20125-1;Parent=rna-AD39_RS20125;anticodon=(pos:complement(360..362));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20125;product=tRNA-Gln NZ_JJLH01000010.1 RefSeq gene 429 503 . - . ID=gene-AD39_RS20120;Name=AD39_RS20120;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20120;old_locus_tag=AD39_0667 NZ_JJLH01000010.1 tRNAscan-SE tRNA 429 503 . - . ID=rna-AD39_RS20120;Parent=gene-AD39_RS20120;anticodon=(pos:complement(469..471));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20120;product=tRNA-Gln NZ_JJLH01000010.1 tRNAscan-SE exon 429 503 . - . ID=exon-AD39_RS20120-1;Parent=rna-AD39_RS20120;anticodon=(pos:complement(469..471));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20120;product=tRNA-Gln NZ_JJLH01000010.1 RefSeq gene 538 612 . - . ID=gene-AD39_RS20115;Name=AD39_RS20115;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20115;old_locus_tag=AD39_0668 NZ_JJLH01000010.1 tRNAscan-SE tRNA 538 612 . - . ID=rna-AD39_RS20115;Parent=gene-AD39_RS20115;anticodon=(pos:complement(578..580));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20115;product=tRNA-Gln NZ_JJLH01000010.1 tRNAscan-SE exon 538 612 . - . ID=exon-AD39_RS20115-1;Parent=rna-AD39_RS20115;anticodon=(pos:complement(578..580));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20115;product=tRNA-Gln NZ_JJLH01000010.1 RefSeq gene 647 721 . - . ID=gene-AD39_RS20110;Name=AD39_RS20110;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20110;old_locus_tag=AD39_0669 NZ_JJLH01000010.1 tRNAscan-SE tRNA 647 721 . - . ID=rna-AD39_RS20110;Parent=gene-AD39_RS20110;anticodon=(pos:complement(687..689));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20110;product=tRNA-Gln NZ_JJLH01000010.1 tRNAscan-SE exon 647 721 . - . ID=exon-AD39_RS20110-1;Parent=rna-AD39_RS20110;anticodon=(pos:complement(687..689));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20110;product=tRNA-Gln NZ_JJLH01000010.1 RefSeq gene 745 829 . - . ID=gene-AD39_RS20105;Name=AD39_RS20105;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20105;old_locus_tag=AD39_0670 NZ_JJLH01000010.1 tRNAscan-SE tRNA 745 829 . - . ID=rna-AD39_RS20105;Parent=gene-AD39_RS20105;anticodon=(pos:complement(793..795));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20105;product=tRNA-Leu NZ_JJLH01000010.1 tRNAscan-SE exon 745 829 . - . ID=exon-AD39_RS20105-1;Parent=rna-AD39_RS20105;anticodon=(pos:complement(793..795));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20105;product=tRNA-Leu NZ_JJLH01000010.1 RefSeq gene 838 914 . - . ID=gene-AD39_RS20100;Name=AD39_RS20100;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS20100;old_locus_tag=AD39_0671 NZ_JJLH01000010.1 tRNAscan-SE tRNA 838 914 . - . ID=rna-AD39_RS20100;Parent=gene-AD39_RS20100;anticodon=(pos:complement(878..880));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20100;product=tRNA-Met NZ_JJLH01000010.1 tRNAscan-SE exon 838 914 . - . ID=exon-AD39_RS20100-1;Parent=rna-AD39_RS20100;anticodon=(pos:complement(878..880));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS20100;product=tRNA-Met NZ_JJLH01000010.1 RefSeq gene 1295 2959 . - . ID=gene-AD39_RS20095;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=AD39_RS20095;old_locus_tag=AD39_0672 NZ_JJLH01000010.1 Protein Homology CDS 1295 2959 . - 0 ID=cds-WP_000337066.1;Parent=gene-AD39_RS20095;Dbxref=GenBank:WP_000337066.1;Name=WP_000337066.1;Ontology_term=GO:0006529,GO:0004066;gbkey=CDS;gene=asnB;go_function=asparagine synthase (glutamine-hydrolyzing) activity|0004066||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001724523.1;locus_tag=AD39_RS20095;product=asparagine synthase B;protein_id=WP_000337066.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 3216 3968 . - . ID=gene-AD39_RS20090;Name=nagD;gbkey=Gene;gene=nagD;gene_biotype=protein_coding;locus_tag=AD39_RS20090;old_locus_tag=AD39_0674 NZ_JJLH01000010.1 Protein Homology CDS 3216 3968 . - 0 ID=cds-WP_000153129.1;Parent=gene-AD39_RS20090;Dbxref=GenBank:WP_000153129.1;Name=WP_000153129.1;gbkey=CDS;gene=nagD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308732.1;locus_tag=AD39_RS20090;product=ribonucleotide monophosphatase NagD;protein_id=WP_000153129.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 4016 5236 . - . ID=gene-AD39_RS20085;Name=nagC;gbkey=Gene;gene=nagC;gene_biotype=protein_coding;gene_synonym=nagR;locus_tag=AD39_RS20085;old_locus_tag=AD39_0675 NZ_JJLH01000010.1 Protein Homology CDS 4016 5236 . - 0 ID=cds-WP_000187594.1;Parent=gene-AD39_RS20085;Dbxref=GenBank:WP_000187594.1;Name=WP_000187594.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=nagC;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308733.1;locus_tag=AD39_RS20085;product=DNA-binding transcriptional regulator NagC;protein_id=WP_000187594.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 5245 6393 . - . ID=gene-AD39_RS20080;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=AD39_RS20080;old_locus_tag=AD39_0676 NZ_JJLH01000010.1 Protein Homology CDS 5245 6393 . - 0 ID=cds-WP_032287498.1;Parent=gene-AD39_RS20080;Dbxref=GenBank:WP_032287498.1;Name=WP_032287498.1;Ontology_term=GO:0006044,GO:0008448;gbkey=CDS;gene=nagA;go_function=N-acetylglucosamine-6-phosphate deacetylase activity|0008448||IEA;go_process=N-acetylglucosamine metabolic process|0006044||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308734.1;locus_tag=AD39_RS20080;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=WP_032287498.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 6453 7253 . - . ID=gene-AD39_RS20075;Name=nagB;gbkey=Gene;gene=nagB;gene_biotype=protein_coding;locus_tag=AD39_RS20075;old_locus_tag=AD39_0677 NZ_JJLH01000010.1 Protein Homology CDS 6453 7253 . - 0 ID=cds-WP_001237072.1;Parent=gene-AD39_RS20075;Dbxref=GenBank:WP_001237072.1;Name=WP_001237072.1;Ontology_term=GO:0006044,GO:0004342;gbkey=CDS;gene=nagB;go_function=glucosamine-6-phosphate deaminase activity|0004342||IEA;go_process=N-acetylglucosamine metabolic process|0006044||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008805656.1;locus_tag=AD39_RS20075;product=glucosamine-6-phosphate deaminase;protein_id=WP_001237072.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 7586 9520 . + . ID=gene-AD39_RS20070;Name=nagE;gbkey=Gene;gene=nagE;gene_biotype=protein_coding;locus_tag=AD39_RS20070;old_locus_tag=AD39_0679 NZ_JJLH01000010.1 Protein Homology CDS 7586 9520 . + 0 ID=cds-WP_032287499.1;Parent=gene-AD39_RS20070;Dbxref=GenBank:WP_032287499.1;Name=WP_032287499.1;Ontology_term=GO:0009401,GO:0008982,GO:0015572,GO:0016020;gbkey=CDS;gene=nagE;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,N-acetylglucosamine transmembrane transporter activity|0015572||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308736.1;locus_tag=AD39_RS20070;product=PTS N-acetyl glucosamine transporter subunit IIABC;protein_id=WP_032287499.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 9734 11398 . + . ID=gene-AD39_RS20065;Name=glnS;gbkey=Gene;gene=glnS;gene_biotype=protein_coding;locus_tag=AD39_RS20065;old_locus_tag=AD39_0680 NZ_JJLH01000010.1 Protein Homology CDS 9734 11398 . + 0 ID=cds-WP_001287154.1;Parent=gene-AD39_RS20065;Dbxref=GenBank:WP_001287154.1;Name=WP_001287154.1;Ontology_term=GO:0006425,GO:0000166,GO:0004819,GO:0005524,GO:0005737;gbkey=CDS;gene=glnS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glutamine-tRNA ligase activity|0004819||IEA,ATP binding|0005524||IEA;go_process=glutaminyl-tRNA aminoacylation|0006425||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415206.1;locus_tag=AD39_RS20065;product=glutamine--tRNA ligase;protein_id=WP_001287154.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 11844 13250 . + . ID=gene-AD39_RS20060;Name=chiP;gbkey=Gene;gene=chiP;gene_biotype=protein_coding;locus_tag=AD39_RS20060;old_locus_tag=AD39_0683 NZ_JJLH01000010.1 Protein Homology CDS 11844 13250 . + 0 ID=cds-WP_001258839.1;Parent=gene-AD39_RS20060;Dbxref=GenBank:WP_001258839.1;Name=WP_001258839.1;Ontology_term=GO:0015774,GO:0052778,GO:0015288;gbkey=CDS;gene=chiP;go_function=porin activity|0015288||IEA;go_process=polysaccharide transport|0015774||IEA,diacetylchitobiose metabolic process|0052778||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415207.1;locus_tag=AD39_RS20060;product=chitoporin ChiP;protein_id=WP_001258839.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 13300 13626 . + . ID=gene-AD39_RS20055;Name=chiQ;gbkey=Gene;gene=chiQ;gene_biotype=protein_coding;locus_tag=AD39_RS20055;old_locus_tag=AD39_0684 NZ_JJLH01000010.1 Protein Homology CDS 13300 13626 . + 0 ID=cds-WP_000733592.1;Parent=gene-AD39_RS20055;Dbxref=GenBank:WP_000733592.1;Name=WP_000733592.1;gbkey=CDS;gene=chiQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308740.1;locus_tag=AD39_RS20055;product=ChiQ/YbfN family lipoprotein;protein_id=WP_000733592.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 13710 14156 . - . ID=gene-AD39_RS20050;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=AD39_RS20050;old_locus_tag=AD39_0685 NZ_JJLH01000010.1 Protein Homology CDS 13710 14156 . - 0 ID=cds-WP_000131702.1;Parent=gene-AD39_RS20050;Dbxref=GenBank:WP_000131702.1;Name=WP_000131702.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=fur;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308741.1;locus_tag=AD39_RS20050;product=ferric iron uptake transcriptional regulator;protein_id=WP_000131702.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 14149 14235 . - . ID=gene-AD39_RS0123370;Name=uof;gbkey=Gene;gene=uof;gene_biotype=protein_coding;locus_tag=AD39_RS0123370 NZ_JJLH01000010.1 Protein Homology CDS 14149 14235 . - 0 ID=cds-WP_001406816.1;Parent=gene-AD39_RS0123370;Dbxref=GenBank:WP_001406816.1;Name=WP_001406816.1;gbkey=CDS;gene=uof;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001491546.1;locus_tag=AD39_RS0123370;product=fur leader peptide;protein_id=WP_001406816.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 14445 14975 . - . ID=gene-AD39_RS20045;Name=fldA;gbkey=Gene;gene=fldA;gene_biotype=protein_coding;locus_tag=AD39_RS20045;old_locus_tag=AD39_0686 NZ_JJLH01000010.1 Protein Homology CDS 14445 14975 . - 0 ID=cds-WP_001018618.1;Parent=gene-AD39_RS20045;Dbxref=GenBank:WP_001018618.1;Name=WP_001018618.1;gbkey=CDS;gene=fldA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308742.1;locus_tag=AD39_RS20045;product=flavodoxin FldA;protein_id=WP_001018618.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 15115 15408 . - . ID=gene-AD39_RS20040;Name=ybfE;gbkey=Gene;gene=ybfE;gene_biotype=protein_coding;locus_tag=AD39_RS20040;old_locus_tag=AD39_0687 NZ_JJLH01000010.1 Protein Homology CDS 15115 15408 . - 0 ID=cds-WP_001300829.1;Parent=gene-AD39_RS20040;Dbxref=GenBank:WP_001300829.1;Name=WP_001300829.1;gbkey=CDS;gene=ybfE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415211.2;locus_tag=AD39_RS20040;product=LexA regulated protein;protein_id=WP_001300829.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 15548 16312 . - . ID=gene-AD39_RS20035;Name=ybfF;gbkey=Gene;gene=ybfF;gene_biotype=protein_coding;locus_tag=AD39_RS20035;old_locus_tag=AD39_0688 NZ_JJLH01000010.1 Protein Homology CDS 15548 16312 . - 0 ID=cds-WP_000773279.1;Parent=gene-AD39_RS20035;Dbxref=GenBank:WP_000773279.1;Name=WP_000773279.1;gbkey=CDS;gene=ybfF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415212.1;locus_tag=AD39_RS20035;product=esterase;protein_id=WP_000773279.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 16497 17042 . + . ID=gene-AD39_RS20030;Name=seqA;gbkey=Gene;gene=seqA;gene_biotype=protein_coding;locus_tag=AD39_RS20030;old_locus_tag=AD39_0689 NZ_JJLH01000010.1 Protein Homology CDS 16497 17042 . + 0 ID=cds-WP_000848387.1;Parent=gene-AD39_RS20030;Dbxref=GenBank:WP_000848387.1;Name=WP_000848387.1;Ontology_term=GO:0032297,GO:0003677;gbkey=CDS;gene=seqA;go_function=DNA binding|0003677||IEA;go_process=negative regulation of DNA-templated DNA replication initiation|0032297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415213.1;locus_tag=AD39_RS20030;product=replication initiation negative regulator SeqA;protein_id=WP_000848387.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 17068 18708 . + . ID=gene-AD39_RS20025;Name=pgm;gbkey=Gene;gene=pgm;gene_biotype=protein_coding;locus_tag=AD39_RS20025;old_locus_tag=AD39_0690 NZ_JJLH01000010.1 Protein Homology CDS 17068 18708 . + 0 ID=cds-WP_001297249.1;Parent=gene-AD39_RS20025;Dbxref=GenBank:WP_001297249.1;Name=WP_001297249.1;Ontology_term=GO:0005975,GO:0004614;gbkey=CDS;gene=pgm;go_function=phosphoglucomutase activity|0004614||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415214.1;locus_tag=AD39_RS20025;product=phosphoglucomutase (alpha-D-glucose-1%2C6-bisphosphate-dependent);protein_id=WP_001297249.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 18764 20083 . - . ID=gene-AD39_RS20020;Name=potE;gbkey=Gene;gene=potE;gene_biotype=protein_coding;locus_tag=AD39_RS20020;old_locus_tag=AD39_0691 NZ_JJLH01000010.1 Protein Homology CDS 18764 20083 . - 0 ID=cds-WP_001398767.1;Parent=gene-AD39_RS20020;Dbxref=GenBank:WP_001398767.1;Name=WP_001398767.1;Ontology_term=GO:0015822,GO:0015847,GO:0055085,GO:0015496,GO:0016020;gbkey=CDS;gene=potE;go_component=membrane|0016020||IEA;go_function=putrescine:ornithine antiporter activity|0015496||IEA;go_process=ornithine transport|0015822||IEA,putrescine transport|0015847||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415219.1;locus_tag=AD39_RS20020;product=putrescine-ornithine antiporter;protein_id=WP_001398767.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 20080 22278 . - . ID=gene-AD39_RS20015;Name=speF;gbkey=Gene;gene=speF;gene_biotype=protein_coding;locus_tag=AD39_RS20015;old_locus_tag=AD39_0692 NZ_JJLH01000010.1 Protein Homology CDS 20080 22278 . - 0 ID=cds-WP_032283066.1;Parent=gene-AD39_RS20015;Dbxref=GenBank:WP_032283066.1;Name=WP_032283066.1;Ontology_term=GO:0006520,GO:0004586;gbkey=CDS;gene=speF;go_function=ornithine decarboxylase activity|0004586||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308748.1;locus_tag=AD39_RS20015;product=ornithine decarboxylase SpeF;protein_id=WP_032283066.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 22589 22693 . - . ID=gene-AD39_RS28860;Name=speFL;gbkey=Gene;gene=speFL;gene_biotype=protein_coding;locus_tag=AD39_RS28860 NZ_JJLH01000010.1 Protein Homology CDS 22589 22693 . - 0 ID=cds-WP_001312672.1;Parent=gene-AD39_RS28860;Dbxref=GenBank:WP_001312672.1;Name=WP_001312672.1;gbkey=CDS;gene=speFL;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051176.1;locus_tag=AD39_RS28860;product=leader peptide SpeFL;protein_id=WP_001312672.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 22672 22806 . - . ID=gene-AD39_RS30030;Name=AD39_RS30030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30030 NZ_JJLH01000010.1 Protein Homology CDS 22672 22806 . - 0 ID=cds-WP_001299172.1;Parent=gene-AD39_RS30030;Dbxref=GenBank:WP_001299172.1;Name=WP_001299172.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001417766.1;locus_tag=AD39_RS30030;product=hypothetical protein;protein_id=WP_001299172.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 22968 23645 . - . ID=gene-AD39_RS20005;Name=kdpE;gbkey=Gene;gene=kdpE;gene_biotype=protein_coding;locus_tag=AD39_RS20005;old_locus_tag=AD39_0694 NZ_JJLH01000010.1 Protein Homology CDS 22968 23645 . - 0 ID=cds-WP_000186103.1;Parent=gene-AD39_RS20005;Dbxref=GenBank:WP_000186103.1;Name=WP_000186103.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=kdpE;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459687.1;locus_tag=AD39_RS20005;product=two-component system response regulator KdpE;protein_id=WP_000186103.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 23642 26326 . - . ID=gene-AD39_RS20000;Name=kdpD;gbkey=Gene;gene=kdpD;gene_biotype=protein_coding;locus_tag=AD39_RS20000;old_locus_tag=AD39_0695 NZ_JJLH01000010.1 Protein Homology CDS 23642 26326 . - 0 ID=cds-WP_032287500.1;Parent=gene-AD39_RS20000;Dbxref=GenBank:WP_032287500.1;Name=WP_032287500.1;Ontology_term=GO:0000160,GO:0000155;gbkey=CDS;gene=kdpD;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308750.1;locus_tag=AD39_RS20000;product=two-component system sensor histidine kinase KdpD;protein_id=WP_032287500.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 26319 26891 . - . ID=gene-AD39_RS19995;Name=kdpC;gbkey=Gene;gene=kdpC;gene_biotype=protein_coding;locus_tag=AD39_RS19995;old_locus_tag=AD39_0696 NZ_JJLH01000010.1 Protein Homology CDS 26319 26891 . - 0 ID=cds-WP_001297248.1;Parent=gene-AD39_RS19995;Dbxref=GenBank:WP_001297248.1;Name=WP_001297248.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpC;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415224.1;locus_tag=AD39_RS19995;product=K(+)-transporting ATPase subunit C;protein_id=WP_001297248.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 26900 28948 . - . ID=gene-AD39_RS19990;Name=kdpB;gbkey=Gene;gene=kdpB;gene_biotype=protein_coding;locus_tag=AD39_RS19990;old_locus_tag=AD39_0697 NZ_JJLH01000010.1 Protein Homology CDS 26900 28948 . - 0 ID=cds-WP_000087964.1;Parent=gene-AD39_RS19990;Dbxref=GenBank:WP_000087964.1;Name=WP_000087964.1;Ontology_term=GO:0006813,GO:0005524,GO:0008556,GO:0016020,GO:0031004;gbkey=CDS;gene=kdpB;go_component=membrane|0016020||IEA,potassium ion-transporting ATPase complex|0031004||IEA;go_function=ATP binding|0005524||IEA,P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308752.1;locus_tag=AD39_RS19990;product=potassium-transporting ATPase subunit KdpB;protein_id=WP_000087964.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 28971 30644 . - . ID=gene-AD39_RS19985;Name=kdpA;gbkey=Gene;gene=kdpA;gene_biotype=protein_coding;locus_tag=AD39_RS19985;old_locus_tag=AD39_0698 NZ_JJLH01000010.1 Protein Homology CDS 28971 30644 . - 0 ID=cds-WP_000741137.1;Parent=gene-AD39_RS19985;Dbxref=GenBank:WP_000741137.1;Name=WP_000741137.1;Ontology_term=GO:0006813,GO:0008556,GO:0031004;gbkey=CDS;gene=kdpA;go_component=potassium ion-transporting ATPase complex|0031004||IEA;go_function=P-type potassium transmembrane transporter activity|0008556||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415226.1;locus_tag=AD39_RS19985;product=potassium-transporting ATPase subunit KdpA;protein_id=WP_000741137.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 30644 30733 . - . ID=gene-AD39_RS0123380;Name=kdpF;gbkey=Gene;gene=kdpF;gene_biotype=protein_coding;locus_tag=AD39_RS0123380 NZ_JJLH01000010.1 Protein Homology CDS 30644 30733 . - 0 ID=cds-WP_001272653.1;Parent=gene-AD39_RS0123380;Dbxref=GenBank:WP_001272653.1;Name=WP_001272653.1;gbkey=CDS;gene=kdpF;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588443.1;locus_tag=AD39_RS0123380;product=K(+)-transporting ATPase subunit F;protein_id=WP_001272653.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 31046 31252 . + . ID=gene-AD39_RS19980;Name=ybfA;gbkey=Gene;gene=ybfA;gene_biotype=protein_coding;locus_tag=AD39_RS19980;old_locus_tag=AD39_0700 NZ_JJLH01000010.1 Protein Homology CDS 31046 31252 . + 0 ID=cds-WP_000424924.1;Parent=gene-AD39_RS19980;Dbxref=GenBank:WP_000424924.1;Name=WP_000424924.1;gbkey=CDS;gene=ybfA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308755.1;locus_tag=AD39_RS19980;product=YbfA family protein;protein_id=WP_000424924.1;transl_table=11 NZ_JJLH01000010.1 RefSeq gene 31952 32718 . + . ID=gene-AD39_RS19975;Name=ybfD;end_range=32718,.;gbkey=Gene;gene=ybfD;gene_biotype=protein_coding;locus_tag=AD39_RS19975;old_locus_tag=AD39_0701;partial=true NZ_JJLH01000010.1 Protein Homology CDS 31952 32718 . + 0 ID=cds-WP_032287501.1;Parent=gene-AD39_RS19975;Dbxref=GenBank:WP_032287501.1;Name=WP_032287501.1;Ontology_term=GO:0006313,GO:0004803;end_range=32718,.;gbkey=CDS;gene=ybfD;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000420980.1;locus_tag=AD39_RS19975;partial=true;product=ISAs1-like element ISEc1 family transposase;protein_id=WP_032287501.1;transl_table=11 ##sequence-region NZ_JJLH01000011.1 1 8942 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000011.1 RefSeq region 1 8942 . + . ID=NZ_JJLH01000011.1:1..8942;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000011.1 RefSeq gene 1 408 . + . ID=gene-AD39_RS0123385;Name=AD39_RS0123385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123385;partial=true;start_range=.,1 NZ_JJLH01000011.1 Protein Homology CDS 1 408 . + 0 ID=cds-WP_032287502.1;Parent=gene-AD39_RS0123385;Dbxref=GenBank:WP_032287502.1;Name=WP_032287502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001725545.1;locus_tag=AD39_RS0123385;partial=true;product=HYD1 signature containing ADP-ribosyltransferase family protein;protein_id=WP_032287502.1;start_range=.,1;transl_table=11 NZ_JJLH01000011.1 RefSeq gene 377 841 . + . ID=gene-AD39_RS19970;Name=AD39_RS19970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19970;old_locus_tag=AD39_0702 NZ_JJLH01000011.1 Protein Homology CDS 377 841 . + 0 ID=cds-WP_023155272.1;Parent=gene-AD39_RS19970;Dbxref=GenBank:WP_023155272.1;Name=WP_023155272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001401850.1;locus_tag=AD39_RS19970;product=hypothetical protein;protein_id=WP_023155272.1;transl_table=11 NZ_JJLH01000011.1 RefSeq gene 888 1181 . - . ID=gene-AD39_RS0123390;Name=AD39_RS0123390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123390;old_locus_tag=AD39_0703 NZ_JJLH01000011.1 Protein Homology CDS 888 1181 . - 0 ID=cds-WP_001401851.1;Parent=gene-AD39_RS0123390;Dbxref=GenBank:WP_001401851.1;Name=WP_001401851.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000807559.1;locus_tag=AD39_RS0123390;product=SymE family type I addiction module toxin;protein_id=WP_001401851.1;transl_table=11 NZ_JJLH01000011.1 RefSeq gene 1263 1655 . - . ID=gene-AD39_RS19965;Name=AD39_RS19965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19965;old_locus_tag=AD39_0704 NZ_JJLH01000011.1 Protein Homology CDS 1263 1655 . - 0 ID=cds-WP_001724481.1;Parent=gene-AD39_RS19965;Dbxref=GenBank:WP_001724481.1;Name=WP_001724481.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006316688.1;locus_tag=AD39_RS19965;product=helix-turn-helix domain-containing protein;protein_id=WP_001724481.1;transl_table=11 NZ_JJLH01000011.1 RefSeq gene 1770 4736 . + . ID=gene-AD39_RS19960;Name=AD39_RS19960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19960;old_locus_tag=AD39_0705 NZ_JJLH01000011.1 Protein Homology CDS 1770 4736 . + 0 ID=cds-WP_212593048.1;Parent=gene-AD39_RS19960;Dbxref=GenBank:WP_212593048.1;Name=WP_212593048.1;Ontology_term=GO:0006260,GO:0003677,GO:0003899,GO:0008270;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA,zinc ion binding|0008270||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014542724.1;locus_tag=AD39_RS19960;product=DNA primase;protein_id=WP_212593048.1;transl_table=11 NZ_JJLH01000011.1 RefSeq gene 4937 6046 . + . ID=gene-AD39_RS19955;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=AD39_RS19955;old_locus_tag=AD39_0706 NZ_JJLH01000011.1 Protein Homology CDS 4937 6046 . + 0 ID=cds-WP_032151699.1;Parent=gene-AD39_RS19955;Dbxref=GenBank:WP_032151699.1;Name=WP_032151699.1;gbkey=CDS;gene=xerC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003570254.1;locus_tag=AD39_RS19955;product=site-specific tyrosine recombinase XerC;protein_id=WP_032151699.1;transl_table=11 NZ_JJLH01000011.1 RefSeq pseudogene 6999 7085 . + . ID=gene-AD39_RS30110;Name=AD39_RS30110;end_range=7085,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30110;partial=true;pseudo=true;start_range=.,6999 NZ_JJLH01000011.1 Protein Homology CDS 6999 7085 . + 0 ID=cds-AD39_RS30110;Parent=gene-AD39_RS30110;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=7085,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008499498.1;locus_tag=AD39_RS30110;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;start_range=.,6999;transl_table=11 NZ_JJLH01000011.1 RefSeq gene 7441 7836 . + . ID=gene-AD39_RS0123400;Name=AD39_RS0123400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123400 NZ_JJLH01000011.1 Protein Homology CDS 7441 7836 . + 0 ID=cds-WP_023155668.1;Parent=gene-AD39_RS0123400;Dbxref=GenBank:WP_023155668.1;Name=WP_023155668.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000357803.1;locus_tag=AD39_RS0123400;product=hypothetical protein;protein_id=WP_023155668.1;transl_table=11 NZ_JJLH01000011.1 RefSeq gene 8176 8942 . + . ID=gene-AD39_RS19950;Name=AD39_RS19950;end_range=8942,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19950;old_locus_tag=AD39_0708;partial=true NZ_JJLH01000011.1 Protein Homology CDS 8176 8942 . + 0 ID=cds-WP_032287501.1-2;Parent=gene-AD39_RS19950;Dbxref=GenBank:WP_032287501.1;Name=WP_032287501.1;Ontology_term=GO:0006313,GO:0004803;end_range=8942,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000420980.1;locus_tag=AD39_RS19950;partial=true;product=ISAs1-like element ISEc1 family transposase;protein_id=WP_032287501.1;transl_table=11 ##sequence-region NZ_JJLH01000012.1 1 5960 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000012.1 RefSeq region 1 5960 . + . ID=NZ_JJLH01000012.1:1..5960;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000012.1 RefSeq gene 145 1281 . + . ID=gene-AD39_RS19945;Name=AD39_RS19945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19945;old_locus_tag=AD39_0709 NZ_JJLH01000012.1 Protein Homology CDS 145 1281 . + 0 ID=cds-WP_001402239.1;Parent=gene-AD39_RS19945;Dbxref=GenBank:WP_001402239.1;Name=WP_001402239.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000420980.1;locus_tag=AD39_RS19945;product=ISAs1-like element ISEc1 family transposase;protein_id=WP_001402239.1;transl_table=11 NZ_JJLH01000012.1 RefSeq gene 1422 1874 . + . ID=gene-AD39_RS19940;Name=AD39_RS19940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19940;old_locus_tag=AD39_0710 NZ_JJLH01000012.1 Protein Homology CDS 1422 1874 . + 0 ID=cds-WP_001542752.1;Parent=gene-AD39_RS19940;Dbxref=GenBank:WP_001542752.1;Name=WP_001542752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003570644.1;locus_tag=AD39_RS19940;product=DcrB-related protein;protein_id=WP_001542752.1;transl_table=11 NZ_JJLH01000012.1 RefSeq gene 1893 5960 . + . ID=gene-AD39_RS19935;Name=AD39_RS19935;end_range=5960,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19935;old_locus_tag=AD39_0711;partial=true NZ_JJLH01000012.1 Protein Homology CDS 1893 5960 . + 0 ID=cds-WP_032287504.1;Parent=gene-AD39_RS19935;Dbxref=GenBank:WP_032287504.1;Name=WP_032287504.1;end_range=5960,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000390554.1;locus_tag=AD39_RS19935;partial=true;product=DUF6531 domain-containing protein;protein_id=WP_032287504.1;transl_table=11 ##sequence-region NZ_JJLH01000013.1 1 85931 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000013.1 RefSeq region 1 85931 . + . ID=NZ_JJLH01000013.1:1..85931;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000013.1 RefSeq gene 1 299 . + . ID=gene-AD39_RS19930;Name=AD39_RS19930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19930;old_locus_tag=AD39_0712;partial=true;start_range=.,1 NZ_JJLH01000013.1 Protein Homology CDS 1 299 . + 2 ID=cds-WP_032283074.1;Parent=gene-AD39_RS19930;Dbxref=GenBank:WP_032283074.1;Name=WP_032283074.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003576368.1;locus_tag=AD39_RS19930;partial=true;product=hypothetical protein;protein_id=WP_032283074.1;start_range=.,1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 556 885 . + . ID=gene-AD39_RS19925;Name=AD39_RS19925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19925;old_locus_tag=AD39_0713 NZ_JJLH01000013.1 Protein Homology CDS 556 885 . + 0 ID=cds-WP_001402131.1;Parent=gene-AD39_RS19925;Dbxref=GenBank:WP_001402131.1;Name=WP_001402131.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001402131.1;locus_tag=AD39_RS19925;product=hypothetical protein;protein_id=WP_001402131.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 927 1208 . + . ID=gene-AD39_RS19920;Name=AD39_RS19920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19920;old_locus_tag=AD39_0714 NZ_JJLH01000013.1 Protein Homology CDS 927 1208 . + 0 ID=cds-WP_001396330.1;Parent=gene-AD39_RS19920;Dbxref=GenBank:WP_001396330.1;Name=WP_001396330.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001396330.1;locus_tag=AD39_RS19920;product=hypothetical protein;protein_id=WP_001396330.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 1256 1585 . - . ID=gene-AD39_RS19915;Name=AD39_RS19915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19915;old_locus_tag=AD39_0715 NZ_JJLH01000013.1 Protein Homology CDS 1256 1585 . - 0 ID=cds-WP_000807561.1;Parent=gene-AD39_RS19915;Dbxref=GenBank:WP_000807561.1;Name=WP_000807561.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706526.1;locus_tag=AD39_RS19915;product=SymE family type I addiction module toxin;protein_id=WP_000807561.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 1714 2223 . + . ID=gene-AD39_RS19910;Name=ybgA;gbkey=Gene;gene=ybgA;gene_biotype=protein_coding;locus_tag=AD39_RS19910;old_locus_tag=AD39_0716 NZ_JJLH01000013.1 Protein Homology CDS 1714 2223 . + 0 ID=cds-WP_001076007.1;Parent=gene-AD39_RS19910;Dbxref=GenBank:WP_001076007.1;Name=WP_001076007.1;gbkey=CDS;gene=ybgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415235.1;locus_tag=AD39_RS19910;product=YbgA family protein;protein_id=WP_001076007.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 2220 3638 . + . ID=gene-AD39_RS19905;Name=phrB;gbkey=Gene;gene=phrB;gene_biotype=protein_coding;locus_tag=AD39_RS19905;old_locus_tag=AD39_0717 NZ_JJLH01000013.1 Protein Homology CDS 2220 3638 . + 0 ID=cds-WP_000207146.1;Parent=gene-AD39_RS19905;Dbxref=GenBank:WP_000207146.1;Name=WP_000207146.1;gbkey=CDS;gene=phrB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001740284.1;locus_tag=AD39_RS19905;product=deoxyribodipyrimidine photo-lyase;protein_id=WP_000207146.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 3680 5161 . - . ID=gene-AD39_RS19900;Name=dtpD;gbkey=Gene;gene=dtpD;gene_biotype=protein_coding;locus_tag=AD39_RS19900;old_locus_tag=AD39_0718 NZ_JJLH01000013.1 Protein Homology CDS 3680 5161 . - 0 ID=cds-WP_001032694.1;Parent=gene-AD39_RS19900;Dbxref=GenBank:WP_001032694.1;Name=WP_001032694.1;gbkey=CDS;gene=dtpD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706523.1;locus_tag=AD39_RS19900;product=dipeptide permease DtpD;protein_id=WP_001032694.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 5432 6175 . + . ID=gene-AD39_RS19895;Name=ybgI;gbkey=Gene;gene=ybgI;gene_biotype=protein_coding;locus_tag=AD39_RS19895;old_locus_tag=AD39_0719 NZ_JJLH01000013.1 Protein Homology CDS 5432 6175 . + 0 ID=cds-WP_000798871.1;Parent=gene-AD39_RS19895;Dbxref=GenBank:WP_000798871.1;Name=WP_000798871.1;gbkey=CDS;gene=ybgI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000798886.1;locus_tag=AD39_RS19895;product=radiation resistance protein YbgI;protein_id=WP_000798871.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 6198 6854 . + . ID=gene-AD39_RS19890;Name=pxpB;gbkey=Gene;gene=pxpB;gene_biotype=protein_coding;locus_tag=AD39_RS19890;old_locus_tag=AD39_0720 NZ_JJLH01000013.1 Protein Homology CDS 6198 6854 . + 0 ID=cds-WP_001188343.1;Parent=gene-AD39_RS19890;Dbxref=GenBank:WP_001188343.1;Name=WP_001188343.1;Ontology_term=GO:0005975,GO:0008152,GO:0017168;gbkey=CDS;gene=pxpB;go_function=5-oxoprolinase (ATP-hydrolyzing) activity|0017168||IEA;go_process=carbohydrate metabolic process|0005975||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308763.1;locus_tag=AD39_RS19890;product=5-oxoprolinase subunit PxpB;protein_id=WP_001188343.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 6848 7780 . + . ID=gene-AD39_RS19885;Name=pxpC;gbkey=Gene;gene=pxpC;gene_biotype=protein_coding;locus_tag=AD39_RS19885;old_locus_tag=AD39_0721 NZ_JJLH01000013.1 Protein Homology CDS 6848 7780 . + 0 ID=cds-WP_000912716.1;Parent=gene-AD39_RS19885;Dbxref=GenBank:WP_000912716.1;Name=WP_000912716.1;gbkey=CDS;gene=pxpC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308764.1;locus_tag=AD39_RS19885;product=5-oxoprolinase subunit PxpC;protein_id=WP_000912716.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 7770 8504 . + . ID=gene-AD39_RS19880;Name=pxpA;gbkey=Gene;gene=pxpA;gene_biotype=protein_coding;locus_tag=AD39_RS19880;old_locus_tag=AD39_0722 NZ_JJLH01000013.1 Protein Homology CDS 7770 8504 . + 0 ID=cds-WP_000687130.1;Parent=gene-AD39_RS19880;Dbxref=GenBank:WP_000687130.1;Name=WP_000687130.1;Ontology_term=GO:0005975,GO:0003824;gbkey=CDS;gene=pxpA;go_function=catalytic activity|0003824||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415241.1;locus_tag=AD39_RS19880;product=5-oxoprolinase subunit PxpA;protein_id=WP_000687130.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 8540 9331 . + . ID=gene-AD39_RS19875;Name=nei;gbkey=Gene;gene=nei;gene_biotype=protein_coding;locus_tag=AD39_RS19875;old_locus_tag=AD39_0723 NZ_JJLH01000013.1 Protein Homology CDS 8540 9331 . + 0 ID=cds-WP_032283077.1;Parent=gene-AD39_RS19875;Dbxref=GenBank:WP_032283077.1;Name=WP_032283077.1;Ontology_term=GO:0006281,GO:0000703,GO:0003677,GO:0008270,GO:0140078;gbkey=CDS;gene=nei;go_function=oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity|0000703||IEA,DNA binding|0003677||IEA,zinc ion binding|0008270||IEA,class I DNA-(apurinic or apyrimidinic site) endonuclease activity|0140078||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308766.1;locus_tag=AD39_RS19875;product=endonuclease VIII;protein_id=WP_032283077.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 9328 10374 . - . ID=gene-AD39_RS19870;Name=abrB;gbkey=Gene;gene=abrB;gene_biotype=protein_coding;locus_tag=AD39_RS19870;old_locus_tag=AD39_0724 NZ_JJLH01000013.1 Protein Homology CDS 9328 10374 . - 0 ID=cds-WP_001297246.1;Parent=gene-AD39_RS19870;Dbxref=GenBank:WP_001297246.1;Name=WP_001297246.1;Ontology_term=GO:0010468,GO:0016020;gbkey=CDS;gene=abrB;go_component=membrane|0016020||IEA;go_process=regulation of gene expression|0010468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415243.4;locus_tag=AD39_RS19870;product=AbrB family transcriptional regulator;protein_id=WP_001297246.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 10526 11587 . - . ID=gene-AD39_RS19865;Name=ybgO;gbkey=Gene;gene=ybgO;gene_biotype=protein_coding;locus_tag=AD39_RS19865;old_locus_tag=AD39_0725 NZ_JJLH01000013.1 Protein Homology CDS 10526 11587 . - 0 ID=cds-WP_001272420.1;Parent=gene-AD39_RS19865;Dbxref=GenBank:WP_001272420.1;Name=WP_001272420.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=ybgO;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415244.4;locus_tag=AD39_RS19865;product=fimbrial protein;protein_id=WP_001272420.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 11584 12315 . - . ID=gene-AD39_RS19860;Name=ybgP;gbkey=Gene;gene=ybgP;gene_biotype=protein_coding;locus_tag=AD39_RS19860;old_locus_tag=AD39_0726 NZ_JJLH01000013.1 Protein Homology CDS 11584 12315 . - 0 ID=cds-WP_000143529.1;Parent=gene-AD39_RS19860;Dbxref=GenBank:WP_000143529.1;Name=WP_000143529.1;Ontology_term=GO:0043711,GO:0061077,GO:0030288;gbkey=CDS;gene=ybgP;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=pilus organization|0043711||IEA,chaperone-mediated protein folding|0061077||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706517.2;locus_tag=AD39_RS19860;product=fimbrial biogenesis chaperone;protein_id=WP_000143529.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 12330 14789 . - . ID=gene-AD39_RS19855;Name=ybgQ;gbkey=Gene;gene=ybgQ;gene_biotype=protein_coding;locus_tag=AD39_RS19855;old_locus_tag=AD39_0727 NZ_JJLH01000013.1 Protein Homology CDS 12330 14789 . - 0 ID=cds-WP_001316936.1;Parent=gene-AD39_RS19855;Dbxref=GenBank:WP_001316936.1;Name=WP_001316936.1;Ontology_term=GO:0009297,GO:0015473,GO:0016020;gbkey=CDS;gene=ybgQ;go_component=membrane|0016020||IEA;go_function=fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706516.2;locus_tag=AD39_RS19855;product=fimbria/pilus outer membrane usher protein;protein_id=WP_001316936.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 14840 15406 . - . ID=gene-AD39_RS19850;Name=AD39_RS19850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19850;old_locus_tag=AD39_0728 NZ_JJLH01000013.1 Protein Homology CDS 14840 15406 . - 0 ID=cds-WP_000472422.1;Parent=gene-AD39_RS19850;Dbxref=GenBank:WP_000472422.1;Name=WP_000472422.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706515.1;locus_tag=AD39_RS19850;product=fimbrial protein;protein_id=WP_000472422.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 15797 17080 . - . ID=gene-AD39_RS19845;Name=gltA;gbkey=Gene;gene=gltA;gene_biotype=protein_coding;locus_tag=AD39_RS19845;old_locus_tag=AD39_0730 NZ_JJLH01000013.1 Protein Homology CDS 15797 17080 . - 0 ID=cds-WP_032141765.1;Parent=gene-AD39_RS19845;Dbxref=GenBank:WP_032141765.1;Name=WP_032141765.1;Ontology_term=GO:0006099,GO:0004108,GO:0005737;gbkey=CDS;gene=gltA;go_component=cytoplasm|0005737||IEA;go_function=citrate (Si)-synthase activity|0004108||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415248.1;locus_tag=AD39_RS19845;product=citrate synthase;protein_id=WP_032141765.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 17286 17393 . - . ID=gene-AD39_RS28870;Name=AD39_RS28870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28870 NZ_JJLH01000013.1 Protein Homology CDS 17286 17393 . - 0 ID=cds-WP_001305582.1;Parent=gene-AD39_RS28870;Dbxref=GenBank:WP_001305582.1;Name=WP_001305582.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518759.1;locus_tag=AD39_RS28870;product=hypothetical protein;protein_id=WP_001305582.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 17774 18178 . + . ID=gene-AD39_RS0123405;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;gene_synonym=cybA,dhsC;locus_tag=AD39_RS0123405;old_locus_tag=AD39_0732 NZ_JJLH01000013.1 Protein Homology CDS 17774 18178 . + 0 ID=cds-WP_000263347.1;Parent=gene-AD39_RS0123405;Dbxref=GenBank:WP_000263347.1;Name=WP_000263347.1;Ontology_term=GO:0006099,GO:0000104,GO:0009055,GO:0016020,GO:0045273;gbkey=CDS;gene=sdhC;go_component=membrane|0016020||IEA,respiratory chain complex II (succinate dehydrogenase)|0045273||IEA;go_function=succinate dehydrogenase activity|0000104||IEA,electron transfer activity|0009055||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000263334.1;locus_tag=AD39_RS0123405;product=succinate dehydrogenase cytochrome b556 subunit;protein_id=WP_000263347.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 18172 18519 . + . ID=gene-AD39_RS19835;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;gene_synonym=cybS,dhsD;locus_tag=AD39_RS19835;old_locus_tag=AD39_0733 NZ_JJLH01000013.1 Protein Homology CDS 18172 18519 . + 0 ID=cds-WP_000254365.1;Parent=gene-AD39_RS19835;Dbxref=GenBank:WP_000254365.1;Name=WP_000254365.1;gbkey=CDS;gene=sdhD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415250.1;locus_tag=AD39_RS19835;product=succinate dehydrogenase membrane anchor subunit;protein_id=WP_000254365.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 18519 20285 . + . ID=gene-AD39_RS19830;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=AD39_RS19830;old_locus_tag=AD39_0734 NZ_JJLH01000013.1 Protein Homology CDS 18519 20285 . + 0 ID=cds-WP_000775540.1;Parent=gene-AD39_RS19830;Dbxref=GenBank:WP_000775540.1;Name=WP_000775540.1;Ontology_term=GO:0006099,GO:0016627,GO:0050660;gbkey=CDS;gene=sdhA;go_function=oxidoreductase activity%2C acting on the CH-CH group of donors|0016627||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122549.1;locus_tag=AD39_RS19830;product=succinate dehydrogenase flavoprotein subunit;protein_id=WP_000775540.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 20301 21017 . + . ID=gene-AD39_RS19825;Name=sdhB;gbkey=Gene;gene=sdhB;gene_biotype=protein_coding;locus_tag=AD39_RS19825;old_locus_tag=AD39_0735 NZ_JJLH01000013.1 Protein Homology CDS 20301 21017 . + 0 ID=cds-WP_001235263.1;Parent=gene-AD39_RS19825;Dbxref=GenBank:WP_001235263.1;Name=WP_001235263.1;gbkey=CDS;gene=sdhB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133276.1;locus_tag=AD39_RS19825;product=succinate dehydrogenase iron-sulfur subunit SdhB;protein_id=WP_001235263.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 21218 24019 . + . ID=gene-AD39_RS19820;Name=sucA;gbkey=Gene;gene=sucA;gene_biotype=protein_coding;locus_tag=AD39_RS19820;old_locus_tag=AD39_0736 NZ_JJLH01000013.1 Protein Homology CDS 21218 24019 . + 0 ID=cds-WP_001396949.1;Parent=gene-AD39_RS19820;Dbxref=GenBank:WP_001396949.1;Name=WP_001396949.1;Ontology_term=GO:0006099,GO:0004591,GO:0030976,GO:0045252;gbkey=CDS;gene=sucA;go_component=oxoglutarate dehydrogenase complex|0045252||IEA;go_function=oxoglutarate dehydrogenase (succinyl-transferring) activity|0004591||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308778.1;locus_tag=AD39_RS19820;product=2-oxoglutarate dehydrogenase E1 component;protein_id=WP_001396949.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 24034 25251 . + . ID=gene-AD39_RS19815;Name=odhB;gbkey=Gene;gene=odhB;gene_biotype=protein_coding;locus_tag=AD39_RS19815;old_locus_tag=AD39_0737 NZ_JJLH01000013.1 Protein Homology CDS 24034 25251 . + 0 ID=cds-WP_001508470.1;Parent=gene-AD39_RS19815;Dbxref=GenBank:WP_001508470.1;Name=WP_001508470.1;Ontology_term=GO:0006099,GO:0004149,GO:0045252;gbkey=CDS;gene=odhB;go_component=oxoglutarate dehydrogenase complex|0045252||IEA;go_function=dihydrolipoyllysine-residue succinyltransferase activity|0004149||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308779.1;locus_tag=AD39_RS19815;product=2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase;protein_id=WP_001508470.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 25345 26511 . + . ID=gene-AD39_RS19810;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=AD39_RS19810;old_locus_tag=AD39_0738 NZ_JJLH01000013.1 Protein Homology CDS 25345 26511 . + 0 ID=cds-WP_001048602.1;Parent=gene-AD39_RS19810;Dbxref=GenBank:WP_001048602.1;Name=WP_001048602.1;Ontology_term=GO:0006099,GO:0003824,GO:0005524,GO:0046872;gbkey=CDS;gene=sucC;go_function=catalytic activity|0003824||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133271.1;locus_tag=AD39_RS19810;product=ADP-forming succinate--CoA ligase subunit beta;protein_id=WP_001048602.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 26511 27380 . + . ID=gene-AD39_RS19805;Name=sucD;gbkey=Gene;gene=sucD;gene_biotype=protein_coding;locus_tag=AD39_RS19805;old_locus_tag=AD39_0739 NZ_JJLH01000013.1 Protein Homology CDS 26511 27380 . + 0 ID=cds-WP_000025458.1;Parent=gene-AD39_RS19805;Dbxref=GenBank:WP_000025458.1;Name=WP_000025458.1;Ontology_term=GO:0003824;gbkey=CDS;gene=sucD;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308781.1;locus_tag=AD39_RS19805;product=succinate--CoA ligase subunit alpha;protein_id=WP_000025458.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 27484 28206 . - . ID=gene-AD39_RS19800;Name=mngR;gbkey=Gene;gene=mngR;gene_biotype=protein_coding;locus_tag=AD39_RS19800;old_locus_tag=AD39_0740 NZ_JJLH01000013.1 Protein Homology CDS 27484 28206 . - 0 ID=cds-WP_000509899.1;Parent=gene-AD39_RS19800;Dbxref=GenBank:WP_000509899.1;Name=WP_000509899.1;gbkey=CDS;gene=mngR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415258.1;locus_tag=AD39_RS19800;product=mannosyl-D-glycerate transport/metabolism system transcriptional repressor MngR;protein_id=WP_000509899.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 28375 30291 . + . ID=gene-AD39_RS19795;Name=mngA;gbkey=Gene;gene=mngA;gene_biotype=protein_coding;locus_tag=AD39_RS19795;old_locus_tag=AD39_0741 NZ_JJLH01000013.1 Protein Homology CDS 28375 30291 . + 0 ID=cds-WP_001054863.1;Parent=gene-AD39_RS19795;Dbxref=GenBank:WP_001054863.1;Name=WP_001054863.1;Ontology_term=GO:0009401,GO:0005351,GO:0022877,GO:0016020;gbkey=CDS;gene=mngA;go_component=membrane|0016020||IEA;go_function=carbohydrate:proton symporter activity|0005351||IEA,protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001393949.1;locus_tag=AD39_RS19795;product=PTS 2-O-a-mannosyl-D-glycerate transporter subunit IIABC;protein_id=WP_001054863.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 30309 32942 . + . ID=gene-AD39_RS19790;Name=mngB;gbkey=Gene;gene=mngB;gene_biotype=protein_coding;locus_tag=AD39_RS19790;old_locus_tag=AD39_0742 NZ_JJLH01000013.1 Protein Homology CDS 30309 32942 . + 0 ID=cds-WP_000649004.1;Parent=gene-AD39_RS19790;Dbxref=GenBank:WP_000649004.1;Name=WP_000649004.1;Ontology_term=GO:0006013,GO:0004559;gbkey=CDS;gene=mngB;go_function=alpha-mannosidase activity|0004559||IEA;go_process=mannose metabolic process|0006013||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415260.1;locus_tag=AD39_RS19790;product=mannosylglycerate hydrolase;protein_id=WP_000649004.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 33790 35358 . + . ID=gene-AD39_RS19780;Name=cydA;gbkey=Gene;gene=cydA;gene_biotype=protein_coding;locus_tag=AD39_RS19780;old_locus_tag=AD39_0744 NZ_JJLH01000013.1 Protein Homology CDS 33790 35358 . + 0 ID=cds-WP_000884361.1;Parent=gene-AD39_RS19780;Dbxref=GenBank:WP_000884361.1;Name=WP_000884361.1;Ontology_term=GO:0019646,GO:0009055,GO:0070069;gbkey=CDS;gene=cydA;go_component=cytochrome complex|0070069||IEA;go_function=electron transfer activity|0009055||IEA;go_process=aerobic electron transport chain|0019646||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415261.2;locus_tag=AD39_RS19780;product=cytochrome ubiquinol oxidase subunit I;protein_id=WP_000884361.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 35374 36513 . + . ID=gene-AD39_RS19775;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=AD39_RS19775;old_locus_tag=AD39_0745 NZ_JJLH01000013.1 Protein Homology CDS 35374 36513 . + 0 ID=cds-WP_000568275.1;Parent=gene-AD39_RS19775;Dbxref=GenBank:WP_000568275.1;Name=WP_000568275.1;Ontology_term=GO:0016020;gbkey=CDS;gene=cydB;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000568269.1;locus_tag=AD39_RS19775;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_000568275.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 36528 36641 . + . ID=gene-AD39_RS19770;Name=cydX;gbkey=Gene;gene=cydX;gene_biotype=protein_coding;locus_tag=AD39_RS19770;old_locus_tag=AD39_0746 NZ_JJLH01000013.1 Protein Homology CDS 36528 36641 . + 0 ID=cds-WP_000270282.1;Parent=gene-AD39_RS19770;Dbxref=GenBank:WP_000270282.1;Name=WP_000270282.1;Ontology_term=GO:0016682;gbkey=CDS;gene=cydX;go_function=oxidoreductase activity%2C acting on diphenols and related substances as donors%2C oxygen as acceptor|0016682||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588444.1;locus_tag=AD39_RS19770;product=cytochrome bd-I oxidase subunit CydX;protein_id=WP_000270282.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 36641 36934 . + . ID=gene-AD39_RS0123415;Name=ybgE;gbkey=Gene;gene=ybgE;gene_biotype=protein_coding;locus_tag=AD39_RS0123415;old_locus_tag=AD39_0747 NZ_JJLH01000013.1 Protein Homology CDS 36641 36934 . + 0 ID=cds-WP_000034602.1;Parent=gene-AD39_RS0123415;Dbxref=GenBank:WP_000034602.1;Name=WP_000034602.1;gbkey=CDS;gene=ybgE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308797.1;locus_tag=AD39_RS0123415;product=cyd operon protein YbgE;protein_id=WP_000034602.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 37084 37488 . + . ID=gene-AD39_RS19765;Name=ybgC;gbkey=Gene;gene=ybgC;gene_biotype=protein_coding;locus_tag=AD39_RS19765;old_locus_tag=AD39_0748 NZ_JJLH01000013.1 Protein Homology CDS 37084 37488 . + 0 ID=cds-WP_001098384.1;Parent=gene-AD39_RS19765;Dbxref=GenBank:WP_001098384.1;Name=WP_001098384.1;gbkey=CDS;gene=ybgC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308798.1;locus_tag=AD39_RS19765;product=tol-pal system-associated acyl-CoA thioesterase;protein_id=WP_001098384.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 37485 38177 . + . ID=gene-AD39_RS19760;Name=tolQ;gbkey=Gene;gene=tolQ;gene_biotype=protein_coding;locus_tag=AD39_RS19760;old_locus_tag=AD39_0749 NZ_JJLH01000013.1 Protein Homology CDS 37485 38177 . + 0 ID=cds-WP_000131314.1;Parent=gene-AD39_RS19760;Dbxref=GenBank:WP_000131314.1;Name=WP_000131314.1;gbkey=CDS;gene=tolQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308799.1;locus_tag=AD39_RS19760;product=Tol-Pal system protein TolQ;protein_id=WP_000131314.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 38181 38609 . + . ID=gene-AD39_RS19755;Name=tolR;gbkey=Gene;gene=tolR;gene_biotype=protein_coding;locus_tag=AD39_RS19755;old_locus_tag=AD39_0750 NZ_JJLH01000013.1 Protein Homology CDS 38181 38609 . + 0 ID=cds-WP_000090097.1;Parent=gene-AD39_RS19755;Dbxref=GenBank:WP_000090097.1;Name=WP_000090097.1;gbkey=CDS;gene=tolR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015965300.1;locus_tag=AD39_RS19755;product=colicin uptake protein TolR;protein_id=WP_000090097.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 38674 39939 . + . ID=gene-AD39_RS19750;Name=tolA;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=AD39_RS19750;old_locus_tag=AD39_0751 NZ_JJLH01000013.1 Protein Homology CDS 38674 39939 . + 0 ID=cds-WP_000030637.1;Parent=gene-AD39_RS19750;Dbxref=GenBank:WP_000030637.1;Name=WP_000030637.1;Ontology_term=GO:0043213,GO:0019534,GO:0016020;gbkey=CDS;gene=tolA;go_component=membrane|0016020||IEA;go_function=toxin transmembrane transporter activity|0019534||IEA;go_process=bacteriocin transport|0043213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415267.1;locus_tag=AD39_RS19750;product=cell envelope integrity protein TolA;protein_id=WP_000030637.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 40072 41364 . + . ID=gene-AD39_RS19745;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=AD39_RS19745;old_locus_tag=AD39_0752 NZ_JJLH01000013.1 Protein Homology CDS 40072 41364 . + 0 ID=cds-WP_001295307.1;Parent=gene-AD39_RS19745;Dbxref=GenBank:WP_001295307.1;Name=WP_001295307.1;Ontology_term=GO:0017038,GO:0005215,GO:0042597;gbkey=CDS;gene=tolB;go_component=periplasmic space|0042597||IEA;go_function=transporter activity|0005215||IEA;go_process=protein import|0017038||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001646851.1;locus_tag=AD39_RS19745;product=Tol-Pal system beta propeller repeat protein TolB;protein_id=WP_001295307.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 41399 41920 . + . ID=gene-AD39_RS19740;Name=pal;gbkey=Gene;gene=pal;gene_biotype=protein_coding;locus_tag=AD39_RS19740;old_locus_tag=AD39_0753 NZ_JJLH01000013.1 Protein Homology CDS 41399 41920 . + 0 ID=cds-WP_001295306.1;Parent=gene-AD39_RS19740;Dbxref=GenBank:WP_001295306.1;Name=WP_001295306.1;gbkey=CDS;gene=pal;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308803.1;locus_tag=AD39_RS19740;product=peptidoglycan-associated lipoprotein Pal;protein_id=WP_001295306.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 41930 42721 . + . ID=gene-AD39_RS19735;Name=cpoB;gbkey=Gene;gene=cpoB;gene_biotype=protein_coding;locus_tag=AD39_RS19735;old_locus_tag=AD39_0754 NZ_JJLH01000013.1 Protein Homology CDS 41930 42721 . + 0 ID=cds-WP_000097580.1;Parent=gene-AD39_RS19735;Dbxref=GenBank:WP_000097580.1;Name=WP_000097580.1;Ontology_term=GO:0051301,GO:0070206,GO:0005515;gbkey=CDS;gene=cpoB;go_function=protein binding|0005515||IEA;go_process=cell division|0051301||IEA,protein trimerization|0070206||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308804.1;locus_tag=AD39_RS19735;product=cell division protein CpoB;protein_id=WP_000097580.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 42886 42961 . + . ID=gene-AD39_RS19730;Name=AD39_RS19730;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19730;old_locus_tag=AD39_0755 NZ_JJLH01000013.1 tRNAscan-SE tRNA 42886 42961 . + . ID=rna-AD39_RS19730;Parent=gene-AD39_RS19730;anticodon=(pos:42919..42921);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19730;product=tRNA-Lys NZ_JJLH01000013.1 tRNAscan-SE exon 42886 42961 . + . ID=exon-AD39_RS19730-1;Parent=rna-AD39_RS19730;anticodon=(pos:42919..42921);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19730;product=tRNA-Lys NZ_JJLH01000013.1 RefSeq gene 43097 43172 . + . ID=gene-AD39_RS19725;Name=AD39_RS19725;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19725;old_locus_tag=AD39_0756 NZ_JJLH01000013.1 tRNAscan-SE tRNA 43097 43172 . + . ID=rna-AD39_RS19725;Parent=gene-AD39_RS19725;anticodon=(pos:43130..43132);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19725;product=tRNA-Val NZ_JJLH01000013.1 tRNAscan-SE exon 43097 43172 . + . ID=exon-AD39_RS19725-1;Parent=rna-AD39_RS19725;anticodon=(pos:43130..43132);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19725;product=tRNA-Val NZ_JJLH01000013.1 RefSeq gene 43175 43250 . + . ID=gene-AD39_RS19720;Name=AD39_RS19720;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19720;old_locus_tag=AD39_0757 NZ_JJLH01000013.1 tRNAscan-SE tRNA 43175 43250 . + . ID=rna-AD39_RS19720;Parent=gene-AD39_RS19720;anticodon=(pos:43208..43210);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19720;product=tRNA-Lys NZ_JJLH01000013.1 tRNAscan-SE exon 43175 43250 . + . ID=exon-AD39_RS19720-1;Parent=rna-AD39_RS19720;anticodon=(pos:43208..43210);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19720;product=tRNA-Lys NZ_JJLH01000013.1 RefSeq gene 43386 43461 . + . ID=gene-AD39_RS19715;Name=AD39_RS19715;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19715;old_locus_tag=AD39_0758 NZ_JJLH01000013.1 tRNAscan-SE tRNA 43386 43461 . + . ID=rna-AD39_RS19715;Parent=gene-AD39_RS19715;anticodon=(pos:43419..43421);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19715;product=tRNA-Val NZ_JJLH01000013.1 tRNAscan-SE exon 43386 43461 . + . ID=exon-AD39_RS19715-1;Parent=rna-AD39_RS19715;anticodon=(pos:43419..43421);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19715;product=tRNA-Val NZ_JJLH01000013.1 RefSeq gene 43464 43539 . + . ID=gene-AD39_RS19710;Name=AD39_RS19710;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19710;old_locus_tag=AD39_0759 NZ_JJLH01000013.1 tRNAscan-SE tRNA 43464 43539 . + . ID=rna-AD39_RS19710;Parent=gene-AD39_RS19710;anticodon=(pos:43497..43499);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19710;product=tRNA-Lys NZ_JJLH01000013.1 tRNAscan-SE exon 43464 43539 . + . ID=exon-AD39_RS19710-1;Parent=rna-AD39_RS19710;anticodon=(pos:43497..43499);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19710;product=tRNA-Lys NZ_JJLH01000013.1 RefSeq gene 43689 43764 . + . ID=gene-AD39_RS19705;Name=AD39_RS19705;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19705;old_locus_tag=AD39_0760 NZ_JJLH01000013.1 tRNAscan-SE tRNA 43689 43764 . + . ID=rna-AD39_RS19705;Parent=gene-AD39_RS19705;anticodon=(pos:43722..43724);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19705;product=tRNA-Val NZ_JJLH01000013.1 tRNAscan-SE exon 43689 43764 . + . ID=exon-AD39_RS19705-1;Parent=rna-AD39_RS19705;anticodon=(pos:43722..43724);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19705;product=tRNA-Val NZ_JJLH01000013.1 RefSeq gene 43767 43842 . + . ID=gene-AD39_RS19700;Name=AD39_RS19700;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19700;old_locus_tag=AD39_0761 NZ_JJLH01000013.1 tRNAscan-SE tRNA 43767 43842 . + . ID=rna-AD39_RS19700;Parent=gene-AD39_RS19700;anticodon=(pos:43800..43802);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19700;product=tRNA-Lys NZ_JJLH01000013.1 tRNAscan-SE exon 43767 43842 . + . ID=exon-AD39_RS19700-1;Parent=rna-AD39_RS19700;anticodon=(pos:43800..43802);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19700;product=tRNA-Lys NZ_JJLH01000013.1 RefSeq gene 43992 44067 . + . ID=gene-AD39_RS19695;Name=AD39_RS19695;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19695;old_locus_tag=AD39_0762 NZ_JJLH01000013.1 tRNAscan-SE tRNA 43992 44067 . + . ID=rna-AD39_RS19695;Parent=gene-AD39_RS19695;anticodon=(pos:44025..44027);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19695;product=tRNA-Val NZ_JJLH01000013.1 tRNAscan-SE exon 43992 44067 . + . ID=exon-AD39_RS19695-1;Parent=rna-AD39_RS19695;anticodon=(pos:44025..44027);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19695;product=tRNA-Val NZ_JJLH01000013.1 RefSeq gene 44071 44146 . + . ID=gene-AD39_RS19690;Name=AD39_RS19690;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19690;old_locus_tag=AD39_0763 NZ_JJLH01000013.1 tRNAscan-SE tRNA 44071 44146 . + . ID=rna-AD39_RS19690;Parent=gene-AD39_RS19690;anticodon=(pos:44104..44106);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19690;product=tRNA-Lys NZ_JJLH01000013.1 tRNAscan-SE exon 44071 44146 . + . ID=exon-AD39_RS19690-1;Parent=rna-AD39_RS19690;anticodon=(pos:44104..44106);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19690;product=tRNA-Lys NZ_JJLH01000013.1 RefSeq gene 44293 44368 . + . ID=gene-AD39_RS19685;Name=AD39_RS19685;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19685;old_locus_tag=AD39_0764 NZ_JJLH01000013.1 tRNAscan-SE tRNA 44293 44368 . + . ID=rna-AD39_RS19685;Parent=gene-AD39_RS19685;anticodon=(pos:44326..44328);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19685;product=tRNA-Lys NZ_JJLH01000013.1 tRNAscan-SE exon 44293 44368 . + . ID=exon-AD39_RS19685-1;Parent=rna-AD39_RS19685;anticodon=(pos:44326..44328);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19685;product=tRNA-Lys NZ_JJLH01000013.1 RefSeq gene 44515 44590 . + . ID=gene-AD39_RS19680;Name=AD39_RS19680;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19680;old_locus_tag=AD39_0765 NZ_JJLH01000013.1 tRNAscan-SE tRNA 44515 44590 . + . ID=rna-AD39_RS19680;Parent=gene-AD39_RS19680;anticodon=(pos:44548..44550);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19680;product=tRNA-Lys NZ_JJLH01000013.1 tRNAscan-SE exon 44515 44590 . + . ID=exon-AD39_RS19680-1;Parent=rna-AD39_RS19680;anticodon=(pos:44548..44550);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19680;product=tRNA-Lys NZ_JJLH01000013.1 RefSeq gene 44624 44699 . + . ID=gene-AD39_RS19675;Name=AD39_RS19675;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19675;old_locus_tag=AD39_0766 NZ_JJLH01000013.1 tRNAscan-SE tRNA 44624 44699 . + . ID=rna-AD39_RS19675;Parent=gene-AD39_RS19675;anticodon=(pos:44657..44659);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19675;product=tRNA-Lys NZ_JJLH01000013.1 tRNAscan-SE exon 44624 44699 . + . ID=exon-AD39_RS19675-1;Parent=rna-AD39_RS19675;anticodon=(pos:44657..44659);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19675;product=tRNA-Lys NZ_JJLH01000013.1 RefSeq gene 44733 44808 . + . ID=gene-AD39_RS19670;Name=AD39_RS19670;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19670;old_locus_tag=AD39_0767 NZ_JJLH01000013.1 tRNAscan-SE tRNA 44733 44808 . + . ID=rna-AD39_RS19670;Parent=gene-AD39_RS19670;anticodon=(pos:44766..44768);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19670;product=tRNA-Lys NZ_JJLH01000013.1 tRNAscan-SE exon 44733 44808 . + . ID=exon-AD39_RS19670-1;Parent=rna-AD39_RS19670;anticodon=(pos:44766..44768);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19670;product=tRNA-Lys NZ_JJLH01000013.1 RefSeq gene 44842 44917 . + . ID=gene-AD39_RS19665;Name=AD39_RS19665;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS19665;old_locus_tag=AD39_0768 NZ_JJLH01000013.1 tRNAscan-SE tRNA 44842 44917 . + . ID=rna-AD39_RS19665;Parent=gene-AD39_RS19665;anticodon=(pos:44875..44877);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19665;product=tRNA-Lys NZ_JJLH01000013.1 tRNAscan-SE exon 44842 44917 . + . ID=exon-AD39_RS19665-1;Parent=rna-AD39_RS19665;anticodon=(pos:44875..44877);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS19665;product=tRNA-Lys NZ_JJLH01000013.1 RefSeq gene 44948 45073 . + . ID=gene-AD39_RS26165;Name=AD39_RS26165;gbkey=Gene;gene_biotype=ncRNA;locus_tag=AD39_RS26165 NZ_JJLH01000013.1 cmsearch ncRNA 44948 45073 . + . ID=rna-AD39_RS26165;Parent=gene-AD39_RS26165;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26165;product=RtT sRNA NZ_JJLH01000013.1 cmsearch exon 44948 45073 . + . ID=exon-AD39_RS26165-1;Parent=rna-AD39_RS26165;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26165;product=RtT sRNA NZ_JJLH01000013.1 RefSeq gene 45322 46365 . + . ID=gene-AD39_RS19660;Name=nadA;gbkey=Gene;gene=nadA;gene_biotype=protein_coding;locus_tag=AD39_RS19660;old_locus_tag=AD39_0769 NZ_JJLH01000013.1 Protein Homology CDS 45322 46365 . + 0 ID=cds-WP_000115295.1;Parent=gene-AD39_RS19660;Dbxref=GenBank:WP_000115295.1;Name=WP_000115295.1;Ontology_term=GO:0009435,GO:0008987,GO:0051539;gbkey=CDS;gene=nadA;go_function=quinolinate synthetase A activity|0008987||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415271.1;locus_tag=AD39_RS19660;product=quinolinate synthase NadA;protein_id=WP_000115295.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 46403 47122 . + . ID=gene-AD39_RS19655;Name=pnuC;gbkey=Gene;gene=pnuC;gene_biotype=protein_coding;locus_tag=AD39_RS19655;old_locus_tag=AD39_0770 NZ_JJLH01000013.1 Protein Homology CDS 46403 47122 . + 0 ID=cds-WP_000345411.1;Parent=gene-AD39_RS19655;Dbxref=GenBank:WP_000345411.1;Name=WP_000345411.1;gbkey=CDS;gene=pnuC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415272.1;locus_tag=AD39_RS19655;product=nicotinamide riboside transporter PnuC;protein_id=WP_000345411.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 47119 48060 . - . ID=gene-AD39_RS19650;Name=zitB;gbkey=Gene;gene=zitB;gene_biotype=protein_coding;locus_tag=AD39_RS19650;old_locus_tag=AD39_0771 NZ_JJLH01000013.1 Protein Homology CDS 47119 48060 . - 0 ID=cds-WP_000951292.1;Parent=gene-AD39_RS19650;Dbxref=GenBank:WP_000951292.1;Name=WP_000951292.1;Ontology_term=GO:0006829,GO:0055085,GO:0005385,GO:0016020;gbkey=CDS;gene=zitB;go_component=membrane|0016020||IEA;go_function=zinc ion transmembrane transporter activity|0005385||IEA;go_process=zinc ion transport|0006829||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415273.1;locus_tag=AD39_RS19650;product=CDF family zinc transporter ZitB;protein_id=WP_000951292.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 48174 48554 . - . ID=gene-AD39_RS19645;Name=ybgS;gbkey=Gene;gene=ybgS;gene_biotype=protein_coding;locus_tag=AD39_RS19645;old_locus_tag=AD39_0772 NZ_JJLH01000013.1 Protein Homology CDS 48174 48554 . - 0 ID=cds-WP_000784351.1;Parent=gene-AD39_RS19645;Dbxref=GenBank:WP_000784351.1;Name=WP_000784351.1;gbkey=CDS;gene=ybgS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415274.1;locus_tag=AD39_RS19645;product=YbgS-like family protein;protein_id=WP_000784351.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 48870 49922 . + . ID=gene-AD39_RS19640;Name=aroG;gbkey=Gene;gene=aroG;gene_biotype=protein_coding;locus_tag=AD39_RS19640;old_locus_tag=AD39_0773 NZ_JJLH01000013.1 Protein Homology CDS 48870 49922 . + 0 ID=cds-WP_001109199.1;Parent=gene-AD39_RS19640;Dbxref=GenBank:WP_001109199.1;Name=WP_001109199.1;gbkey=CDS;gene=aroG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001109196.1;locus_tag=AD39_RS19640;product=3-deoxy-7-phosphoheptulonate synthase AroG;protein_id=WP_001109199.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 50080 50832 . - . ID=gene-AD39_RS19635;Name=gpmA;gbkey=Gene;gene=gpmA;gene_biotype=protein_coding;locus_tag=AD39_RS19635;old_locus_tag=AD39_0774 NZ_JJLH01000013.1 Protein Homology CDS 50080 50832 . - 0 ID=cds-WP_001295305.1;Parent=gene-AD39_RS19635;Dbxref=GenBank:WP_001295305.1;Name=WP_001295305.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmA;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000301556.1;locus_tag=AD39_RS19635;product=2%2C3-diphosphoglycerate-dependent phosphoglycerate mutase;protein_id=WP_001295305.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 51037 52077 . - . ID=gene-AD39_RS19630;Name=galM;gbkey=Gene;gene=galM;gene_biotype=protein_coding;locus_tag=AD39_RS19630;old_locus_tag=AD39_0775 NZ_JJLH01000013.1 Protein Homology CDS 51037 52077 . - 0 ID=cds-WP_000931389.1;Parent=gene-AD39_RS19630;Dbxref=GenBank:WP_000931389.1;Name=WP_000931389.1;Ontology_term=GO:0006012,GO:0004034;gbkey=CDS;gene=galM;go_function=aldose 1-epimerase activity|0004034||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415277.1;locus_tag=AD39_RS19630;product=galactose-1-epimerase;protein_id=WP_000931389.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 52071 53219 . - . ID=gene-AD39_RS19625;Name=galK;gbkey=Gene;gene=galK;gene_biotype=protein_coding;locus_tag=AD39_RS19625;old_locus_tag=AD39_0776 NZ_JJLH01000013.1 Protein Homology CDS 52071 53219 . - 0 ID=cds-WP_032287505.1;Parent=gene-AD39_RS19625;Dbxref=GenBank:WP_032287505.1;Name=WP_032287505.1;Ontology_term=GO:0006012,GO:0046835,GO:0004335,GO:0005524;gbkey=CDS;gene=galK;go_function=galactokinase activity|0004335||IEA,ATP binding|0005524||IEA;go_process=galactose metabolic process|0006012||IEA,carbohydrate phosphorylation|0046835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001713229.1;locus_tag=AD39_RS19625;product=galactokinase;protein_id=WP_032287505.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 53223 54269 . - . ID=gene-AD39_RS19620;Name=galT;gbkey=Gene;gene=galT;gene_biotype=protein_coding;locus_tag=AD39_RS19620;old_locus_tag=AD39_0777 NZ_JJLH01000013.1 Protein Homology CDS 53223 54269 . - 0 ID=cds-WP_000191508.1;Parent=gene-AD39_RS19620;Dbxref=GenBank:WP_000191508.1;Name=WP_000191508.1;Ontology_term=GO:0006012,GO:0008108,GO:0008270;gbkey=CDS;gene=galT;go_function=UDP-glucose:hexose-1-phosphate uridylyltransferase activity|0008108||IEA,zinc ion binding|0008270||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308813.1;locus_tag=AD39_RS19620;product=galactose-1-phosphate uridylyltransferase;protein_id=WP_000191508.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 54279 55295 . - . ID=gene-AD39_RS19615;Name=galE;gbkey=Gene;gene=galE;gene_biotype=protein_coding;locus_tag=AD39_RS19615;old_locus_tag=AD39_0778 NZ_JJLH01000013.1 Protein Homology CDS 54279 55295 . - 0 ID=cds-WP_001265443.1;Parent=gene-AD39_RS19615;Dbxref=GenBank:WP_001265443.1;Name=WP_001265443.1;Ontology_term=GO:0006012,GO:0003978;gbkey=CDS;gene=galE;go_function=UDP-glucose 4-epimerase activity|0003978||IEA;go_process=galactose metabolic process|0006012||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308814.3;locus_tag=AD39_RS19615;product=UDP-glucose 4-epimerase GalE;protein_id=WP_001265443.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 55556 57028 . - . ID=gene-AD39_RS19610;Name=modF;gbkey=Gene;gene=modF;gene_biotype=protein_coding;locus_tag=AD39_RS19610;old_locus_tag=AD39_0779 NZ_JJLH01000013.1 Protein Homology CDS 55556 57028 . - 0 ID=cds-WP_000096869.1;Parent=gene-AD39_RS19610;Dbxref=GenBank:WP_000096869.1;Name=WP_000096869.1;Ontology_term=GO:0005524;gbkey=CDS;gene=modF;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415281.1;locus_tag=AD39_RS19610;product=molybdate ABC transporter ATP-binding protein ModF;protein_id=WP_000096869.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 57096 57884 . - . ID=gene-AD39_RS19605;Name=modE;gbkey=Gene;gene=modE;gene_biotype=protein_coding;locus_tag=AD39_RS19605;old_locus_tag=AD39_0780 NZ_JJLH01000013.1 Protein Homology CDS 57096 57884 . - 0 ID=cds-WP_001147435.1;Parent=gene-AD39_RS19605;Dbxref=GenBank:WP_001147435.1;Name=WP_001147435.1;Ontology_term=GO:0006355,GO:0015689,GO:0003700,GO:0030151;gbkey=CDS;gene=modE;go_function=DNA-binding transcription factor activity|0003700||IEA,molybdenum ion binding|0030151||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308816.1;locus_tag=AD39_RS19605;product=molybdenum-dependent transcriptional regulator;protein_id=WP_001147435.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 58013 58162 . + . ID=gene-AD39_RS19600;Name=acrZ;gbkey=Gene;gene=acrZ;gene_biotype=protein_coding;locus_tag=AD39_RS19600;old_locus_tag=AD39_0781 NZ_JJLH01000013.1 Protein Homology CDS 58013 58162 . + 0 ID=cds-WP_000891515.1;Parent=gene-AD39_RS19600;Dbxref=GenBank:WP_000891515.1;Name=WP_000891515.1;gbkey=CDS;gene=acrZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308817.1;locus_tag=AD39_RS19600;product=multidrug efflux pump accessory protein AcrZ;protein_id=WP_000891515.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 58329 59102 . + . ID=gene-AD39_RS19595;Name=modA;gbkey=Gene;gene=modA;gene_biotype=protein_coding;locus_tag=AD39_RS19595;old_locus_tag=AD39_0782 NZ_JJLH01000013.1 Protein Homology CDS 58329 59102 . + 0 ID=cds-WP_000101994.1;Parent=gene-AD39_RS19595;Dbxref=GenBank:WP_000101994.1;Name=WP_000101994.1;Ontology_term=GO:0015689;gbkey=CDS;gene=modA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308818.1;locus_tag=AD39_RS19595;product=molybdate ABC transporter substrate-binding protein;protein_id=WP_000101994.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 59102 59791 . + . ID=gene-AD39_RS19590;Name=modB;gbkey=Gene;gene=modB;gene_biotype=protein_coding;locus_tag=AD39_RS19590;old_locus_tag=AD39_0783 NZ_JJLH01000013.1 Protein Homology CDS 59102 59791 . + 0 ID=cds-WP_000604034.1;Parent=gene-AD39_RS19590;Dbxref=GenBank:WP_000604034.1;Name=WP_000604034.1;Ontology_term=GO:0015689,GO:0015098,GO:0016020;gbkey=CDS;gene=modB;go_component=membrane|0016020||IEA;go_function=molybdate ion transmembrane transporter activity|0015098||IEA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308819.1;locus_tag=AD39_RS19590;product=molybdate ABC transporter permease subunit;protein_id=WP_000604034.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 59794 60852 . + . ID=gene-AD39_RS19585;Name=modC;gbkey=Gene;gene=modC;gene_biotype=protein_coding;locus_tag=AD39_RS19585;old_locus_tag=AD39_0784 NZ_JJLH01000013.1 Protein Homology CDS 59794 60852 . + 0 ID=cds-WP_000891685.1;Parent=gene-AD39_RS19585;Dbxref=GenBank:WP_000891685.1;Name=WP_000891685.1;Ontology_term=GO:0015689,GO:0005524,GO:0015098,GO:0016020;gbkey=CDS;gene=modC;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,molybdate ion transmembrane transporter activity|0015098||IEA;go_process=molybdate ion transport|0015689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308820.1;locus_tag=AD39_RS19585;product=molybdenum ABC transporter ATP-binding protein ModC;protein_id=WP_000891685.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 60853 61671 . - . ID=gene-AD39_RS19580;Name=ybhA;gbkey=Gene;gene=ybhA;gene_biotype=protein_coding;locus_tag=AD39_RS19580;old_locus_tag=AD39_0785 NZ_JJLH01000013.1 Protein Homology CDS 60853 61671 . - 0 ID=cds-WP_000213425.1;Parent=gene-AD39_RS19580;Dbxref=GenBank:WP_000213425.1;Name=WP_000213425.1;gbkey=CDS;gene=ybhA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308821.1;locus_tag=AD39_RS19580;product=bifunctional pyridoxal phosphate/fructose-1%2C6-bisphosphate phosphatase;protein_id=WP_000213425.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 61826 62821 . + . ID=gene-AD39_RS19575;Name=pgl;gbkey=Gene;gene=pgl;gene_biotype=protein_coding;gene_synonym=ybhE;locus_tag=AD39_RS19575;old_locus_tag=AD39_0786 NZ_JJLH01000013.1 Protein Homology CDS 61826 62821 . + 0 ID=cds-WP_000815435.1;Parent=gene-AD39_RS19575;Dbxref=GenBank:WP_000815435.1;Name=WP_000815435.1;Ontology_term=GO:0017057;gbkey=CDS;gene=pgl;go_function=6-phosphogluconolactonase activity|0017057||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415288.1;locus_tag=AD39_RS19575;product=6-phosphogluconolactonase;protein_id=WP_000815435.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 62862 63815 . - . ID=gene-AD39_RS19570;Name=ybhD;gbkey=Gene;gene=ybhD;gene_biotype=protein_coding;locus_tag=AD39_RS19570;old_locus_tag=AD39_0787 NZ_JJLH01000013.1 Protein Homology CDS 62862 63815 . - 0 ID=cds-WP_000679972.1;Parent=gene-AD39_RS19570;Dbxref=GenBank:WP_000679972.1;Name=WP_000679972.1;Ontology_term=GO:0003677,GO:0003700,GO:0005829;gbkey=CDS;gene=ybhD;go_component=cytosol|0005829||IEA;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308823.3;locus_tag=AD39_RS19570;product=LysR family transcriptional regulator;protein_id=WP_000679972.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 63999 65051 . + . ID=gene-AD39_RS19565;Name=ybhH;gbkey=Gene;gene=ybhH;gene_biotype=protein_coding;locus_tag=AD39_RS19565;old_locus_tag=AD39_0789 NZ_JJLH01000013.1 Protein Homology CDS 63999 65051 . + 0 ID=cds-WP_000723652.1;Parent=gene-AD39_RS19565;Dbxref=GenBank:WP_000723652.1;Name=WP_000723652.1;gbkey=CDS;gene=ybhH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415290.1;locus_tag=AD39_RS19565;product=4-oxalomesaconate tautomerase;protein_id=WP_000723652.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 65127 66560 . + . ID=gene-AD39_RS19560;Name=ybhI;gbkey=Gene;gene=ybhI;gene_biotype=protein_coding;locus_tag=AD39_RS19560;old_locus_tag=AD39_0790 NZ_JJLH01000013.1 Protein Homology CDS 65127 66560 . + 0 ID=cds-WP_001036475.1;Parent=gene-AD39_RS19560;Dbxref=GenBank:WP_001036475.1;Name=WP_001036475.1;Ontology_term=GO:0022857,GO:0005886;gbkey=CDS;gene=ybhI;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415291.1;locus_tag=AD39_RS19560;product=anion permease;protein_id=WP_001036475.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 66743 69004 . + . ID=gene-AD39_RS19555;Name=ybhJ;gbkey=Gene;gene=ybhJ;gene_biotype=protein_coding;locus_tag=AD39_RS19555;old_locus_tag=AD39_0791 NZ_JJLH01000013.1 Protein Homology CDS 66743 69004 . + 0 ID=cds-WP_000593948.1;Parent=gene-AD39_RS19555;Dbxref=GenBank:WP_000593948.1;Name=WP_000593948.1;gbkey=CDS;gene=ybhJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415292.2;locus_tag=AD39_RS19555;product=hydratase;protein_id=WP_000593948.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 69145 70428 . - . ID=gene-AD39_RS19550;Name=ybhC;gbkey=Gene;gene=ybhC;gene_biotype=protein_coding;locus_tag=AD39_RS19550;old_locus_tag=AD39_0792 NZ_JJLH01000013.1 Protein Homology CDS 69145 70428 . - 0 ID=cds-WP_001091569.1;Parent=gene-AD39_RS19550;Dbxref=GenBank:WP_001091569.1;Name=WP_001091569.1;Ontology_term=GO:0042545,GO:0030599;gbkey=CDS;gene=ybhC;go_function=pectinesterase activity|0030599||IEA;go_process=cell wall modification|0042545||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415293.1;locus_tag=AD39_RS19550;product=putative acyl-CoA thioester hydrolase;protein_id=WP_001091569.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 70563 71633 . - . ID=gene-AD39_RS19545;Name=AD39_RS19545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19545;old_locus_tag=AD39_0793 NZ_JJLH01000013.1 Protein Homology CDS 70563 71633 . - 0 ID=cds-WP_000533646.1;Parent=gene-AD39_RS19545;Dbxref=GenBank:WP_000533646.1;Name=WP_000533646.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000533644.1;locus_tag=AD39_RS19545;product=tyrosine-type recombinase/integrase;protein_id=WP_000533646.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 71611 71829 . - . ID=gene-AD39_RS0123430;Name=AD39_RS0123430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123430 NZ_JJLH01000013.1 Protein Homology CDS 71611 71829 . - 0 ID=cds-WP_001303849.1;Parent=gene-AD39_RS0123430;Dbxref=GenBank:WP_001303849.1;Name=WP_001303849.1;Ontology_term=GO:0006310,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001325331.1;locus_tag=AD39_RS0123430;product=excisionase;protein_id=WP_001303849.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 71869 72036 . - . ID=gene-AD39_RS19540;Name=AD39_RS19540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19540;old_locus_tag=AD39_0794 NZ_JJLH01000013.1 Protein Homology CDS 71869 72036 . - 0 ID=cds-WP_000545745.1;Parent=gene-AD39_RS19540;Dbxref=GenBank:WP_000545745.1;Name=WP_000545745.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308829.1;locus_tag=AD39_RS19540;product=hypothetical protein;protein_id=WP_000545745.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 72279 72881 . + . ID=gene-AD39_RS0123435;Name=AD39_RS0123435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123435 NZ_JJLH01000013.1 Protein Homology CDS 72279 72881 . + 0 ID=cds-WP_001348592.1;Parent=gene-AD39_RS0123435;Dbxref=GenBank:WP_001348592.1;Name=WP_001348592.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308831.2;locus_tag=AD39_RS0123435;product=hypothetical protein;protein_id=WP_001348592.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 73092 73313 . - . ID=gene-AD39_RS0123440;Name=AD39_RS0123440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123440 NZ_JJLH01000013.1 Protein Homology CDS 73092 73313 . - 0 ID=cds-WP_000763367.1;Parent=gene-AD39_RS0123440;Dbxref=GenBank:WP_000763367.1;Name=WP_000763367.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308832.1;locus_tag=AD39_RS0123440;product=TraR/DksA family transcriptional regulator;protein_id=WP_000763367.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 73412 73627 . - . ID=gene-AD39_RS19535;Name=AD39_RS19535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19535;old_locus_tag=AD39_0796 NZ_JJLH01000013.1 Protein Homology CDS 73412 73627 . - 0 ID=cds-WP_000188870.1;Parent=gene-AD39_RS19535;Dbxref=GenBank:WP_000188870.1;Name=WP_000188870.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000151206.1;locus_tag=AD39_RS19535;product=hypothetical protein;protein_id=WP_000188870.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 73704 73895 . - . ID=gene-AD39_RS0123450;Name=AD39_RS0123450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123450 NZ_JJLH01000013.1 Protein Homology CDS 73704 73895 . - 0 ID=cds-WP_000548531.1;Parent=gene-AD39_RS0123450;Dbxref=GenBank:WP_000548531.1;Name=WP_000548531.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308834.1;locus_tag=AD39_RS0123450;product=DUF1382 family protein;protein_id=WP_000548531.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 73868 74050 . - . ID=gene-AD39_RS0123455;Name=AD39_RS0123455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123455 NZ_JJLH01000013.1 Protein Homology CDS 73868 74050 . - 0 ID=cds-WP_000682318.1;Parent=gene-AD39_RS0123455;Dbxref=GenBank:WP_000682318.1;Name=WP_000682318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309200.1;locus_tag=AD39_RS0123455;product=DUF1317 domain-containing protein;protein_id=WP_000682318.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 74047 74727 . - . ID=gene-AD39_RS0123460;Name=AD39_RS0123460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123460;old_locus_tag=AD39_0798 NZ_JJLH01000013.1 Protein Homology CDS 74047 74727 . - 0 ID=cds-WP_000186804.1;Parent=gene-AD39_RS0123460;Dbxref=GenBank:WP_000186804.1;Name=WP_000186804.1;Ontology_term=GO:0004527,GO:0046872;gbkey=CDS;go_function=exonuclease activity|0004527||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309201.1;locus_tag=AD39_RS0123460;product=lambda exonuclease family protein;protein_id=WP_000186804.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 74724 75509 . - . ID=gene-AD39_RS19530;Name=bet;gbkey=Gene;gene=bet;gene_biotype=protein_coding;locus_tag=AD39_RS19530;old_locus_tag=AD39_0799 NZ_JJLH01000013.1 Protein Homology CDS 74724 75509 . - 0 ID=cds-WP_001465106.1;Parent=gene-AD39_RS19530;Dbxref=GenBank:WP_001465106.1;Name=WP_001465106.1;Ontology_term=GO:0006310;gbkey=CDS;gene=bet;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309202.1;locus_tag=AD39_RS19530;product=phage recombination protein Bet;protein_id=WP_001465106.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 75515 75811 . - . ID=gene-AD39_RS19525;Name=AD39_RS19525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19525;old_locus_tag=AD39_0800 NZ_JJLH01000013.1 Protein Homology CDS 75515 75811 . - 0 ID=cds-WP_000995490.1;Parent=gene-AD39_RS19525;Dbxref=GenBank:WP_000995490.1;Name=WP_000995490.1;Ontology_term=GO:0060703;gbkey=CDS;go_function=deoxyribonuclease inhibitor activity|0060703||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309203.2;locus_tag=AD39_RS19525;product=host-nuclease inhibitor Gam family protein;protein_id=WP_000995490.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 75887 76093 . - . ID=gene-AD39_RS19520;Name=AD39_RS19520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19520;old_locus_tag=AD39_0801 NZ_JJLH01000013.1 Protein Homology CDS 75887 76093 . - 0 ID=cds-WP_000233576.1;Parent=gene-AD39_RS19520;Dbxref=GenBank:WP_000233576.1;Name=WP_000233576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524508.1;locus_tag=AD39_RS19520;product=phage encoded cell division inhibitor protein;protein_id=WP_000233576.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 76614 77546 . - . ID=gene-AD39_RS19515;Name=AD39_RS19515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19515;old_locus_tag=AD39_0802 NZ_JJLH01000013.1 Protein Homology CDS 76614 77546 . - 0 ID=cds-WP_001288169.1;Parent=gene-AD39_RS19515;Dbxref=GenBank:WP_001288169.1;Name=WP_001288169.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001288169.1;locus_tag=AD39_RS19515;product=hypothetical protein;protein_id=WP_001288169.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 77543 78016 . - . ID=gene-AD39_RS0123465;Name=AD39_RS0123465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123465 NZ_JJLH01000013.1 Protein Homology CDS 77543 78016 . - 0 ID=cds-WP_000414677.1;Parent=gene-AD39_RS0123465;Dbxref=GenBank:WP_000414677.1;Name=WP_000414677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000414677.1;locus_tag=AD39_RS0123465;product=DUF6932 family protein;protein_id=WP_000414677.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 78098 78787 . - . ID=gene-AD39_RS19510;Name=AD39_RS19510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19510;old_locus_tag=AD39_0803 NZ_JJLH01000013.1 Protein Homology CDS 78098 78787 . - 0 ID=cds-WP_000858975.1;Parent=gene-AD39_RS19510;Dbxref=GenBank:WP_000858975.1;Name=WP_000858975.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000858971.1;locus_tag=AD39_RS19510;product=S24 family peptidase;protein_id=WP_000858975.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 78892 79122 . + . ID=gene-AD39_RS19505;Name=AD39_RS19505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19505;old_locus_tag=AD39_0804 NZ_JJLH01000013.1 Protein Homology CDS 78892 79122 . + 0 ID=cds-WP_001067458.1;Parent=gene-AD39_RS19505;Dbxref=GenBank:WP_001067458.1;Name=WP_001067458.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001067458.1;locus_tag=AD39_RS19505;product=transcriptional regulator;protein_id=WP_001067458.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 79192 79731 . + . ID=gene-AD39_RS19500;Name=AD39_RS19500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19500;old_locus_tag=AD39_0805 NZ_JJLH01000013.1 Protein Homology CDS 79192 79731 . + 0 ID=cds-WP_001182897.1;Parent=gene-AD39_RS19500;Dbxref=GenBank:WP_001182897.1;Name=WP_001182897.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001182892.1;locus_tag=AD39_RS19500;product=toxin YdaT domain-containing protein;protein_id=WP_001182897.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 79728 80747 . + . ID=gene-AD39_RS19495;Name=AD39_RS19495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19495;old_locus_tag=AD39_0806 NZ_JJLH01000013.1 Protein Homology CDS 79728 80747 . + 0 ID=cds-WP_077744142.1;Parent=gene-AD39_RS19495;Dbxref=GenBank:WP_077744142.1;Name=WP_077744142.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000147908.1;locus_tag=AD39_RS19495;product=replication protein;protein_id=WP_077744142.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 80744 81445 . + . ID=gene-AD39_RS19490;Name=AD39_RS19490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19490;old_locus_tag=AD39_0807 NZ_JJLH01000013.1 Protein Homology CDS 80744 81445 . + 0 ID=cds-WP_001598056.1;Parent=gene-AD39_RS19490;Dbxref=GenBank:WP_001598056.1;Name=WP_001598056.1;Ontology_term=GO:0006270;gbkey=CDS;go_process=DNA replication initiation|0006270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309639.1;locus_tag=AD39_RS19490;product=replication protein P;protein_id=WP_001598056.1;transl_table=11 NZ_JJLH01000013.1 RefSeq pseudogene 81442 81710 . + . ID=gene-AD39_RS30115;Name=AD39_RS30115;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30115;pseudo=true NZ_JJLH01000013.1 Protein Homology CDS 81442 81710 . + 0 ID=cds-AD39_RS30115;Parent=gene-AD39_RS30115;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000145916.1;locus_tag=AD39_RS30115;product=protein ren;pseudo=true;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 81762 82256 . + . ID=gene-AD39_RS0123475;Name=AD39_RS0123475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123475 NZ_JJLH01000013.1 Protein Homology CDS 81762 82256 . + 0 ID=cds-WP_001224618.1;Parent=gene-AD39_RS0123475;Dbxref=GenBank:WP_001224618.1;Name=WP_001224618.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001224618.1;locus_tag=AD39_RS0123475;product=type VI secretion system-associated protein TagO;protein_id=WP_001224618.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 82628 82954 . + . ID=gene-AD39_RS0123480;Name=AD39_RS0123480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123480 NZ_JJLH01000013.1 Protein Homology CDS 82628 82954 . + 0 ID=cds-WP_001598055.1;Parent=gene-AD39_RS0123480;Dbxref=GenBank:WP_001598055.1;Name=WP_001598055.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000802853.1;locus_tag=AD39_RS0123480;product=hypothetical protein;protein_id=WP_001598055.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 83094 83639 . + . ID=gene-AD39_RS19485;Name=AD39_RS19485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19485;old_locus_tag=AD39_0810 NZ_JJLH01000013.1 GeneMarkS-2+ CDS 83094 83639 . + 0 ID=cds-WP_001598053.1;Parent=gene-AD39_RS19485;Dbxref=GenBank:WP_001598053.1;Name=WP_001598053.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS19485;product=hypothetical protein;protein_id=WP_001598053.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 83733 83834 . + . ID=gene-AD39_RS28230;Name=AD39_RS28230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28230 NZ_JJLH01000013.1 Protein Homology CDS 83733 83834 . + 0 ID=cds-WP_074149993.1;Parent=gene-AD39_RS28230;Dbxref=GenBank:WP_074149993.1;Name=WP_074149993.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165308.1;locus_tag=AD39_RS28230;product=hypothetical protein;protein_id=WP_074149993.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 83831 84286 . + . ID=gene-AD39_RS19480;Name=ybcN;gbkey=Gene;gene=ybcN;gene_biotype=protein_coding;locus_tag=AD39_RS19480;old_locus_tag=AD39_0811 NZ_JJLH01000013.1 Protein Homology CDS 83831 84286 . + 0 ID=cds-WP_001598050.1;Parent=gene-AD39_RS19480;Dbxref=GenBank:WP_001598050.1;Name=WP_001598050.1;gbkey=CDS;gene=ybcN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309643.1;locus_tag=AD39_RS19480;product=DNA base-flipping protein YbcN;protein_id=WP_001598050.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 84286 84456 . + . ID=gene-AD39_RS19475;Name=ninE;gbkey=Gene;gene=ninE;gene_biotype=protein_coding;locus_tag=AD39_RS19475;old_locus_tag=AD39_0812 NZ_JJLH01000013.1 Protein Homology CDS 84286 84456 . + 0 ID=cds-WP_000224914.1;Parent=gene-AD39_RS19475;Dbxref=GenBank:WP_000224914.1;Name=WP_000224914.1;gbkey=CDS;gene=ninE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309644.1;locus_tag=AD39_RS19475;product=NinE family protein;protein_id=WP_000224914.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 84449 84739 . + . ID=gene-AD39_RS19470;Name=ybcO;gbkey=Gene;gene=ybcO;gene_biotype=protein_coding;locus_tag=AD39_RS19470;old_locus_tag=AD39_0813 NZ_JJLH01000013.1 Protein Homology CDS 84449 84739 . + 0 ID=cds-WP_000774484.1;Parent=gene-AD39_RS19470;Dbxref=GenBank:WP_000774484.1;Name=WP_000774484.1;gbkey=CDS;gene=ybcO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309645.1;locus_tag=AD39_RS19470;product=DUF1364 domain-containing protein;protein_id=WP_000774484.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 84736 85098 . + . ID=gene-AD39_RS19465;Name=rusA;gbkey=Gene;gene=rusA;gene_biotype=protein_coding;locus_tag=AD39_RS19465;old_locus_tag=AD39_0814 NZ_JJLH01000013.1 Protein Homology CDS 84736 85098 . + 0 ID=cds-WP_001099712.1;Parent=gene-AD39_RS19465;Dbxref=GenBank:WP_001099712.1;Name=WP_001099712.1;Ontology_term=GO:0006281,GO:0006310,GO:0008821;gbkey=CDS;gene=rusA;go_function=crossover junction DNA endonuclease activity|0008821||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415082.1;locus_tag=AD39_RS19465;product=crossover junction endodeoxyribonuclease RusA;protein_id=WP_001099712.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 85095 85235 . + . ID=gene-AD39_RS26525;Name=ylcG;gbkey=Gene;gene=ylcG;gene_biotype=protein_coding;locus_tag=AD39_RS26525;old_locus_tag=AD39_0815 NZ_JJLH01000013.1 Protein Homology CDS 85095 85235 . + 0 ID=cds-WP_000971068.1;Parent=gene-AD39_RS26525;Dbxref=GenBank:WP_000971068.1;Name=WP_000971068.1;gbkey=CDS;gene=ylcG;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588439.1;locus_tag=AD39_RS26525;product=YlcG family protein;protein_id=WP_000971068.1;transl_table=11 NZ_JJLH01000013.1 RefSeq gene 85321 85704 . + . ID=gene-AD39_RS19460;Name=quuD;gbkey=Gene;gene=quuD;gene_biotype=protein_coding;locus_tag=AD39_RS19460;old_locus_tag=AD39_0816 NZ_JJLH01000013.1 Protein Homology CDS 85321 85704 . + 0 ID=cds-WP_001204791.1;Parent=gene-AD39_RS19460;Dbxref=GenBank:WP_001204791.1;Name=WP_001204791.1;gbkey=CDS;gene=quuD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415083.1;locus_tag=AD39_RS19460;product=antitermination protein QuuD;protein_id=WP_001204791.1;transl_table=11 ##sequence-region NZ_JJLH01000014.1 1 316015 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000014.1 RefSeq region 1 316015 . + . ID=NZ_JJLH01000014.1:1..316015;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000014.1 RefSeq gene 254 2287 . + . ID=gene-AD39_RS19455;Name=AD39_RS19455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19455;old_locus_tag=AD39_0818 NZ_JJLH01000014.1 Protein Homology CDS 254 2287 . + 0 ID=cds-WP_032287506.1;Parent=gene-AD39_RS19455;Dbxref=GenBank:WP_032287506.1;Name=WP_032287506.1;Ontology_term=GO:0019062,GO:0046718;gbkey=CDS;go_process=virion attachment to host cell|0019062||IEA,symbiont entry into host cell|0046718||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001162653.1;locus_tag=AD39_RS19455;product=phage tail protein;protein_id=WP_032287506.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 2287 2871 . + . ID=gene-AD39_RS19450;Name=AD39_RS19450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19450;old_locus_tag=AD39_0819 NZ_JJLH01000014.1 Protein Homology CDS 2287 2871 . + 0 ID=cds-WP_032283095.1;Parent=gene-AD39_RS19450;Dbxref=GenBank:WP_032283095.1;Name=WP_032283095.1;Ontology_term=GO:0098004;gbkey=CDS;go_process=virus tail fiber assembly|0098004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000885581.1;locus_tag=AD39_RS19450;product=tail fiber assembly protein;protein_id=WP_032283095.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 2945 4276 . - . ID=gene-AD39_RS19445;Name=AD39_RS19445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19445;old_locus_tag=AD39_0820 NZ_JJLH01000014.1 Protein Homology CDS 2945 4276 . - 0 ID=cds-WP_000586339.1;Parent=gene-AD39_RS19445;Dbxref=GenBank:WP_000586339.1;Name=WP_000586339.1;Ontology_term=GO:0007165,GO:0005525,GO:0046872,GO:0052621;gbkey=CDS;go_function=GTP binding|0005525||IEA,metal ion binding|0046872||IEA,diguanylate cyclase activity|0052621||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000586336.1;locus_tag=AD39_RS19445;product=sensor domain-containing diguanylate cyclase;protein_id=WP_000586339.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 4507 4644 . + . ID=gene-AD39_RS29625;Name=AD39_RS29625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29625 NZ_JJLH01000014.1 Protein Homology CDS 4507 4644 . + 0 ID=cds-WP_148725091.1;Parent=gene-AD39_RS29625;Dbxref=GenBank:WP_148725091.1;Name=WP_148725091.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001343825.1;locus_tag=AD39_RS29625;product=capsid protein;protein_id=WP_148725091.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 5022 5498 . - . ID=gene-AD39_RS19440;Name=ybhB;gbkey=Gene;gene=ybhB;gene_biotype=protein_coding;locus_tag=AD39_RS19440;old_locus_tag=AD39_0821 NZ_JJLH01000014.1 Protein Homology CDS 5022 5498 . - 0 ID=cds-WP_000767391.1;Parent=gene-AD39_RS19440;Dbxref=GenBank:WP_000767391.1;Name=WP_000767391.1;gbkey=CDS;gene=ybhB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308878.1;locus_tag=AD39_RS19440;product=kinase inhibitor;protein_id=WP_000767391.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 5557 6846 . - . ID=gene-AD39_RS19435;Name=bioA;gbkey=Gene;gene=bioA;gene_biotype=protein_coding;locus_tag=AD39_RS19435;old_locus_tag=AD39_0822 NZ_JJLH01000014.1 Protein Homology CDS 5557 6846 . - 0 ID=cds-WP_071998638.1;Parent=gene-AD39_RS19435;Dbxref=GenBank:WP_071998638.1;Name=WP_071998638.1;Ontology_term=GO:0009102,GO:0004015,GO:0030170;gbkey=CDS;gene=bioA;go_function=adenosylmethionine-8-amino-7-oxononanoate transaminase activity|0004015||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308879.1;locus_tag=AD39_RS19435;product=adenosylmethionine--8-amino-7-oxononanoate transaminase;protein_id=WP_071998638.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 6933 7973 . + . ID=gene-AD39_RS19430;Name=bioB;gbkey=Gene;gene=bioB;gene_biotype=protein_coding;locus_tag=AD39_RS19430;old_locus_tag=AD39_0823 NZ_JJLH01000014.1 Protein Homology CDS 6933 7973 . + 0 ID=cds-WP_000951213.1;Parent=gene-AD39_RS19430;Dbxref=GenBank:WP_000951213.1;Name=WP_000951213.1;Ontology_term=GO:0009102,GO:0004076,GO:0051536,GO:1904047;gbkey=CDS;gene=bioB;go_function=biotin synthase activity|0004076||IEA,iron-sulfur cluster binding|0051536||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415296.1;locus_tag=AD39_RS19430;product=biotin synthase BioB;protein_id=WP_000951213.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 7970 9124 . + . ID=gene-AD39_RS19425;Name=bioF;gbkey=Gene;gene=bioF;gene_biotype=protein_coding;locus_tag=AD39_RS19425;old_locus_tag=AD39_0824 NZ_JJLH01000014.1 Protein Homology CDS 7970 9124 . + 0 ID=cds-WP_000118840.1;Parent=gene-AD39_RS19425;Dbxref=GenBank:WP_000118840.1;Name=WP_000118840.1;Ontology_term=GO:0009102,GO:0008710;gbkey=CDS;gene=bioF;go_function=8-amino-7-oxononanoate synthase activity|0008710||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706654.1;locus_tag=AD39_RS19425;product=8-amino-7-oxononanoate synthase;protein_id=WP_000118840.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 9111 9866 . + . ID=gene-AD39_RS19420;Name=bioC;gbkey=Gene;gene=bioC;gene_biotype=protein_coding;locus_tag=AD39_RS19420;old_locus_tag=AD39_0825 NZ_JJLH01000014.1 Protein Homology CDS 9111 9866 . + 0 ID=cds-WP_000246805.1;Parent=gene-AD39_RS19420;Dbxref=GenBank:WP_000246805.1;Name=WP_000246805.1;Ontology_term=GO:0009102,GO:0010340;gbkey=CDS;gene=bioC;go_function=carboxyl-O-methyltransferase activity|0010340||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415298.1;locus_tag=AD39_RS19420;product=malonyl-ACP O-methyltransferase BioC;protein_id=WP_000246805.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 9859 10536 . + . ID=gene-AD39_RS19415;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=AD39_RS19415;old_locus_tag=AD39_0826 NZ_JJLH01000014.1 Protein Homology CDS 9859 10536 . + 0 ID=cds-WP_000044882.1;Parent=gene-AD39_RS19415;Dbxref=GenBank:WP_000044882.1;Name=WP_000044882.1;Ontology_term=GO:0009102,GO:0000287,GO:0004141,GO:0005524;gbkey=CDS;gene=bioD;go_function=magnesium ion binding|0000287||IEA,dethiobiotin synthase activity|0004141||IEA,ATP binding|0005524||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415299.1;locus_tag=AD39_RS19415;product=dethiobiotin synthase;protein_id=WP_000044882.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 11115 13136 . + . ID=gene-AD39_RS19410;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;locus_tag=AD39_RS19410;old_locus_tag=AD39_0827 NZ_JJLH01000014.1 Protein Homology CDS 11115 13136 . + 0 ID=cds-WP_000042533.1;Parent=gene-AD39_RS19410;Dbxref=GenBank:WP_000042533.1;Name=WP_000042533.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887,GO:0009380;gbkey=CDS;gene=uvrB;go_component=excinuclease repair complex|0009380||IEA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123745.1;locus_tag=AD39_RS19410;product=excinuclease ABC subunit UvrB;protein_id=WP_000042533.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 13328 14236 . - . ID=gene-AD39_RS19405;Name=yvcK;gbkey=Gene;gene=yvcK;gene_biotype=protein_coding;locus_tag=AD39_RS19405;old_locus_tag=AD39_0828 NZ_JJLH01000014.1 Protein Homology CDS 13328 14236 . - 0 ID=cds-WP_001295302.1;Parent=gene-AD39_RS19405;Dbxref=GenBank:WP_001295302.1;Name=WP_001295302.1;gbkey=CDS;gene=yvcK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415301.1;locus_tag=AD39_RS19405;product=uridine diphosphate-N-acetylglucosamine-binding protein YvcK;protein_id=WP_001295302.1;transl_table=11 NZ_JJLH01000014.1 cmsearch riboswitch 14501 14645 . + . ID=id-NZ_JJLH01000014.1:14501..14645;Dbxref=RFAM:RF01055;Note=molybdenum cofactor riboswitch;bound_moiety=molybdenum cofactor;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_JJLH01000014.1 RefSeq gene 14633 15622 . + . ID=gene-AD39_RS19400;Name=moaA;gbkey=Gene;gene=moaA;gene_biotype=protein_coding;locus_tag=AD39_RS19400;old_locus_tag=AD39_0829 NZ_JJLH01000014.1 Protein Homology CDS 14633 15622 . + 0 ID=cds-WP_001315357.1;Parent=gene-AD39_RS19400;Dbxref=GenBank:WP_001315357.1;Name=WP_001315357.1;Ontology_term=GO:0006777,GO:0046872,GO:0051539;gbkey=CDS;gene=moaA;go_function=metal ion binding|0046872||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308886.1;locus_tag=AD39_RS19400;product=GTP 3'%2C8-cyclase MoaA;protein_id=WP_001315357.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 15644 16156 . + . ID=gene-AD39_RS19395;Name=moaB;gbkey=Gene;gene=moaB;gene_biotype=protein_coding;locus_tag=AD39_RS19395;old_locus_tag=AD39_0830 NZ_JJLH01000014.1 Protein Homology CDS 15644 16156 . + 0 ID=cds-WP_000084639.1;Parent=gene-AD39_RS19395;Dbxref=GenBank:WP_000084639.1;Name=WP_000084639.1;Ontology_term=GO:0006777,GO:0003824;gbkey=CDS;gene=moaB;go_function=catalytic activity|0003824||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123739.1;locus_tag=AD39_RS19395;product=molybdenum cofactor biosynthesis protein B;protein_id=WP_000084639.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 16159 16644 . + . ID=gene-AD39_RS19390;Name=moaC;gbkey=Gene;gene=moaC;gene_biotype=protein_coding;locus_tag=AD39_RS19390;old_locus_tag=AD39_0831 NZ_JJLH01000014.1 Protein Homology CDS 16159 16644 . + 0 ID=cds-WP_000080885.1;Parent=gene-AD39_RS19390;Dbxref=GenBank:WP_000080885.1;Name=WP_000080885.1;Ontology_term=GO:0006777,GO:0061799;gbkey=CDS;gene=moaC;go_function=cyclic pyranopterin monophosphate synthase activity|0061799||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308888.1;locus_tag=AD39_RS19390;product=cyclic pyranopterin monophosphate synthase MoaC;protein_id=WP_000080885.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 16637 16882 . + . ID=gene-AD39_RS19385;Name=moaD;gbkey=Gene;gene=moaD;gene_biotype=protein_coding;locus_tag=AD39_RS19385;old_locus_tag=AD39_0832 NZ_JJLH01000014.1 Protein Homology CDS 16637 16882 . + 0 ID=cds-WP_000598619.1;Parent=gene-AD39_RS19385;Dbxref=GenBank:WP_000598619.1;Name=WP_000598619.1;Ontology_term=GO:0006777;gbkey=CDS;gene=moaD;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415305.1;locus_tag=AD39_RS19385;product=molybdopterin synthase sulfur carrier subunit;protein_id=WP_000598619.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 16884 17336 . + . ID=gene-AD39_RS19380;Name=moaE;gbkey=Gene;gene=moaE;gene_biotype=protein_coding;locus_tag=AD39_RS19380;old_locus_tag=AD39_0833 NZ_JJLH01000014.1 Protein Homology CDS 16884 17336 . + 0 ID=cds-WP_000852287.1;Parent=gene-AD39_RS19380;Dbxref=GenBank:WP_000852287.1;Name=WP_000852287.1;Ontology_term=GO:0006777;gbkey=CDS;gene=moaE;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415306.1;locus_tag=AD39_RS19380;product=molybdopterin synthase catalytic subunit MoaE;protein_id=WP_000852287.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 17473 18177 . + . ID=gene-AD39_RS19375;Name=ybhL;gbkey=Gene;gene=ybhL;gene_biotype=protein_coding;locus_tag=AD39_RS19375;old_locus_tag=AD39_0834 NZ_JJLH01000014.1 Protein Homology CDS 17473 18177 . + 0 ID=cds-WP_001445107.1;Parent=gene-AD39_RS19375;Dbxref=GenBank:WP_001445107.1;Name=WP_001445107.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ybhL;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415307.1;locus_tag=AD39_RS19375;product=Bax inhibitor-1/YccA family protein;protein_id=WP_001445107.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 18322 19026 . + . ID=gene-AD39_RS26545;Name=AD39_RS26545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS26545 NZ_JJLH01000014.1 Protein Homology CDS 18322 19026 . + 0 ID=cds-WP_001299026.1;Parent=gene-AD39_RS26545;Dbxref=GenBank:WP_001299026.1;Name=WP_001299026.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001299026.1;locus_tag=AD39_RS26545;product=Bax inhibitor-1 family protein;protein_id=WP_001299026.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 19096 19809 . + . ID=gene-AD39_RS19370;Name=AD39_RS19370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19370;old_locus_tag=AD39_0836 NZ_JJLH01000014.1 Protein Homology CDS 19096 19809 . + 0 ID=cds-WP_001088647.1;Parent=gene-AD39_RS19370;Dbxref=GenBank:WP_001088647.1;Name=WP_001088647.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003570877.1;locus_tag=AD39_RS19370;product=Bax inhibitor-1/YccA family protein;protein_id=WP_001088647.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 19845 20801 . - . ID=gene-AD39_RS19365;Name=ybhN;gbkey=Gene;gene=ybhN;gene_biotype=protein_coding;locus_tag=AD39_RS19365;old_locus_tag=AD39_0837 NZ_JJLH01000014.1 Protein Homology CDS 19845 20801 . - 0 ID=cds-WP_000045450.1;Parent=gene-AD39_RS19365;Dbxref=GenBank:WP_000045450.1;Name=WP_000045450.1;gbkey=CDS;gene=ybhN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415309.1;locus_tag=AD39_RS19365;product=lysylphosphatidylglycerol synthase domain-containing protein;protein_id=WP_000045450.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 20801 22042 . - . ID=gene-AD39_RS19360;Name=clsB;gbkey=Gene;gene=clsB;gene_biotype=protein_coding;locus_tag=AD39_RS19360;old_locus_tag=AD39_0838 NZ_JJLH01000014.1 Protein Homology CDS 20801 22042 . - 0 ID=cds-WP_032283097.1;Parent=gene-AD39_RS19360;Dbxref=GenBank:WP_032283097.1;Name=WP_032283097.1;Ontology_term=GO:0032049,GO:0008808;gbkey=CDS;gene=clsB;go_function=cardiolipin synthase activity|0008808||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308894.1;locus_tag=AD39_RS19360;product=cardiolipin synthase ClsB;protein_id=WP_032283097.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 22039 22800 . - . ID=gene-AD39_RS19355;Name=ybhP;gbkey=Gene;gene=ybhP;gene_biotype=protein_coding;locus_tag=AD39_RS19355;old_locus_tag=AD39_0839 NZ_JJLH01000014.1 Protein Homology CDS 22039 22800 . - 0 ID=cds-WP_001113351.1;Parent=gene-AD39_RS19355;Dbxref=GenBank:WP_001113351.1;Name=WP_001113351.1;Ontology_term=GO:0003824;gbkey=CDS;gene=ybhP;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308895.1;locus_tag=AD39_RS19355;product=endonuclease/exonuclease/phosphatase family protein;protein_id=WP_001113351.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 22933 23343 . + . ID=gene-AD39_RS19350;Name=ybhQ;gbkey=Gene;gene=ybhQ;gene_biotype=protein_coding;locus_tag=AD39_RS19350;old_locus_tag=AD39_0840 NZ_JJLH01000014.1 Protein Homology CDS 22933 23343 . + 0 ID=cds-WP_000871982.1;Parent=gene-AD39_RS19350;Dbxref=GenBank:WP_000871982.1;Name=WP_000871982.1;gbkey=CDS;gene=ybhQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308896.1;locus_tag=AD39_RS19350;product=YbhQ family protein;protein_id=WP_000871982.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 23305 24411 . - . ID=gene-AD39_RS19345;Name=ybhR;gbkey=Gene;gene=ybhR;gene_biotype=protein_coding;locus_tag=AD39_RS19345;old_locus_tag=AD39_0841 NZ_JJLH01000014.1 Protein Homology CDS 23305 24411 . - 0 ID=cds-WP_024217457.1;Parent=gene-AD39_RS19345;Dbxref=GenBank:WP_024217457.1;Name=WP_024217457.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;gene=ybhR;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308897.1;locus_tag=AD39_RS19345;product=ABC transporter permease;protein_id=WP_024217457.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 24422 25555 . - . ID=gene-AD39_RS19340;Name=ybhS;gbkey=Gene;gene=ybhS;gene_biotype=protein_coding;locus_tag=AD39_RS19340;old_locus_tag=AD39_0842 NZ_JJLH01000014.1 Protein Homology CDS 24422 25555 . - 0 ID=cds-WP_000070131.1;Parent=gene-AD39_RS19340;Dbxref=GenBank:WP_000070131.1;Name=WP_000070131.1;Ontology_term=GO:0140359,GO:0016020;gbkey=CDS;gene=ybhS;go_component=membrane|0016020||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308898.1;locus_tag=AD39_RS19340;product=ABC transporter permease;protein_id=WP_000070131.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 25548 27284 . - . ID=gene-AD39_RS19335;Name=ybhF;gbkey=Gene;gene=ybhF;gene_biotype=protein_coding;locus_tag=AD39_RS19335;old_locus_tag=AD39_0843 NZ_JJLH01000014.1 Protein Homology CDS 25548 27284 . - 0 ID=cds-WP_001481445.1;Parent=gene-AD39_RS19335;Dbxref=GenBank:WP_001481445.1;Name=WP_001481445.1;Ontology_term=GO:0005524;gbkey=CDS;gene=ybhF;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308899.2;locus_tag=AD39_RS19335;product=ATP-binding cassette domain-containing protein;protein_id=WP_001481445.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 27277 28272 . - . ID=gene-AD39_RS19330;Name=hlyD;gbkey=Gene;gene=hlyD;gene_biotype=protein_coding;locus_tag=AD39_RS19330;old_locus_tag=AD39_0844 NZ_JJLH01000014.1 Protein Homology CDS 27277 28272 . - 0 ID=cds-WP_000743444.1;Parent=gene-AD39_RS19330;Dbxref=GenBank:WP_000743444.1;Name=WP_000743444.1;gbkey=CDS;gene=hlyD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308900.2;locus_tag=AD39_RS19330;product=secretion protein HlyD;protein_id=WP_000743444.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 28275 28946 . - . ID=gene-AD39_RS19325;Name=cecR;gbkey=Gene;gene=cecR;gene_biotype=protein_coding;locus_tag=AD39_RS19325;old_locus_tag=AD39_0845 NZ_JJLH01000014.1 Protein Homology CDS 28275 28946 . - 0 ID=cds-WP_001315358.1;Parent=gene-AD39_RS19325;Dbxref=GenBank:WP_001315358.1;Name=WP_001315358.1;gbkey=CDS;gene=cecR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415317.4;locus_tag=AD39_RS19325;product=DNA-binding transcriptional regulator CecR;protein_id=WP_001315358.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 29175 30539 . + . ID=gene-AD39_RS19320;Name=rhlE;gbkey=Gene;gene=rhlE;gene_biotype=protein_coding;locus_tag=AD39_RS19320;old_locus_tag=AD39_0846 NZ_JJLH01000014.1 Protein Homology CDS 29175 30539 . + 0 ID=cds-WP_000007102.1;Parent=gene-AD39_RS19320;Dbxref=GenBank:WP_000007102.1;Name=WP_000007102.1;Ontology_term=GO:0003724;gbkey=CDS;gene=rhlE;go_function=RNA helicase activity|0003724||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415318.1;locus_tag=AD39_RS19320;product=ATP-dependent RNA helicase RhlE;protein_id=WP_000007102.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 30771 31253 . - . ID=gene-AD39_RS19315;Name=ybiA;gbkey=Gene;gene=ybiA;gene_biotype=protein_coding;locus_tag=AD39_RS19315;old_locus_tag=AD39_0847 NZ_JJLH01000014.1 Protein Homology CDS 30771 31253 . - 0 ID=cds-WP_001145128.1;Parent=gene-AD39_RS19315;Dbxref=GenBank:WP_001145128.1;Name=WP_001145128.1;gbkey=CDS;gene=ybiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415319.1;locus_tag=AD39_RS19315;product=N-glycosidase YbiA;protein_id=WP_001145128.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 31373 33523 . + . ID=gene-AD39_RS19310;Name=dinG;gbkey=Gene;gene=dinG;gene_biotype=protein_coding;locus_tag=AD39_RS19310;old_locus_tag=AD39_0848 NZ_JJLH01000014.1 Protein Homology CDS 31373 33523 . + 0 ID=cds-WP_001307069.1;Parent=gene-AD39_RS19310;Dbxref=GenBank:WP_001307069.1;Name=WP_001307069.1;Ontology_term=GO:0006139,GO:0003677,GO:0003678,GO:0005524,GO:0016818;gbkey=CDS;gene=dinG;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308904.1;locus_tag=AD39_RS19310;product=ATP-dependent DNA helicase DinG;protein_id=WP_001307069.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 33551 34513 . + . ID=gene-AD39_RS19305;Name=ybiB;gbkey=Gene;gene=ybiB;gene_biotype=protein_coding;locus_tag=AD39_RS19305;old_locus_tag=AD39_0849 NZ_JJLH01000014.1 Protein Homology CDS 33551 34513 . + 0 ID=cds-WP_000386551.1;Parent=gene-AD39_RS19305;Dbxref=GenBank:WP_000386551.1;Name=WP_000386551.1;gbkey=CDS;gene=ybiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415321.1;locus_tag=AD39_RS19305;product=DNA-binding protein YbiB;protein_id=WP_000386551.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 34654 35739 . + . ID=gene-AD39_RS19300;Name=hcxB;gbkey=Gene;gene=hcxB;gene_biotype=protein_coding;locus_tag=AD39_RS19300;old_locus_tag=AD39_0850 NZ_JJLH01000014.1 Protein Homology CDS 34654 35739 . + 0 ID=cds-WP_001657989.1;Parent=gene-AD39_RS19300;Dbxref=GenBank:WP_001657989.1;Name=WP_001657989.1;gbkey=CDS;gene=hcxB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415322.1;locus_tag=AD39_RS19300;product=hydroxycarboxylate dehydrogenase HcXB;protein_id=WP_001657989.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 35806 35865 . + . ID=gene-AD39_RS29630;Name=ybiE;gbkey=Gene;gene=ybiE;gene_biotype=protein_coding;locus_tag=AD39_RS29630 NZ_JJLH01000014.1 Protein Homology CDS 35806 35865 . + 0 ID=cds-WP_211180490.1;Parent=gene-AD39_RS29630;Dbxref=GenBank:WP_211180490.1;Name=WP_211180490.1;gbkey=CDS;gene=ybiE;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051178.1;locus_tag=AD39_RS29630;product=protein YbiE;protein_id=WP_211180490.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 35968 36228 . - . ID=gene-AD39_RS19295;Name=ybiJ;gbkey=Gene;gene=ybiJ;gene_biotype=protein_coding;locus_tag=AD39_RS19295;old_locus_tag=AD39_0851 NZ_JJLH01000014.1 Protein Homology CDS 35968 36228 . - 0 ID=cds-WP_000849301.1;Parent=gene-AD39_RS19295;Dbxref=GenBank:WP_000849301.1;Name=WP_000849301.1;gbkey=CDS;gene=ybiJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415323.1;locus_tag=AD39_RS19295;product=DUF1471 family protein YbiJ;protein_id=WP_000849301.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 36493 36759 . - . ID=gene-AD39_RS19290;Name=ybiI;gbkey=Gene;gene=ybiI;gene_biotype=protein_coding;locus_tag=AD39_RS19290;old_locus_tag=AD39_0852 NZ_JJLH01000014.1 Protein Homology CDS 36493 36759 . - 0 ID=cds-WP_000146343.1;Parent=gene-AD39_RS19290;Dbxref=GenBank:WP_000146343.1;Name=WP_000146343.1;gbkey=CDS;gene=ybiI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415324.1;locus_tag=AD39_RS19290;product=C4-type zinc finger protein YbiI;protein_id=WP_000146343.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 36833 37510 . - . ID=gene-AD39_RS19285;Name=ybiX;gbkey=Gene;gene=ybiX;gene_biotype=protein_coding;locus_tag=AD39_RS19285;old_locus_tag=AD39_0853 NZ_JJLH01000014.1 Protein Homology CDS 36833 37510 . - 0 ID=cds-WP_000990176.1;Parent=gene-AD39_RS19285;Dbxref=GenBank:WP_000990176.1;Name=WP_000990176.1;gbkey=CDS;gene=ybiX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415325.4;locus_tag=AD39_RS19285;product=PKHD-type hydroxylase YbiX;protein_id=WP_000990176.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 37552 39834 . - . ID=gene-AD39_RS19280;Name=fiu;gbkey=Gene;gene=fiu;gene_biotype=protein_coding;locus_tag=AD39_RS19280;old_locus_tag=AD39_0854 NZ_JJLH01000014.1 Protein Homology CDS 37552 39834 . - 0 ID=cds-WP_000430036.1;Parent=gene-AD39_RS19280;Dbxref=GenBank:WP_000430036.1;Name=WP_000430036.1;Ontology_term=GO:0015891,GO:0015344;gbkey=CDS;gene=fiu;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308910.1;locus_tag=AD39_RS19280;product=catecholate siderophore receptor Fiu;protein_id=WP_000430036.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 40098 40358 . - . ID=gene-AD39_RS28885;Name=mcbA;gbkey=Gene;gene=mcbA;gene_biotype=protein_coding;locus_tag=AD39_RS28885;old_locus_tag=AD39_0856 NZ_JJLH01000014.1 Protein Homology CDS 40098 40358 . - 0 ID=cds-WP_000710619.1;Parent=gene-AD39_RS28885;Dbxref=GenBank:WP_000710619.1;Name=WP_000710619.1;gbkey=CDS;gene=mcbA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415327.2;locus_tag=AD39_RS28885;product=DUF1471 family periplasmic protein McbA;protein_id=WP_000710619.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 40634 41560 . + . ID=gene-AD39_RS19270;Name=rlmF;gbkey=Gene;gene=rlmF;gene_biotype=protein_coding;locus_tag=AD39_RS19270;old_locus_tag=AD39_0857 NZ_JJLH01000014.1 Protein Homology CDS 40634 41560 . + 0 ID=cds-WP_001478040.1;Parent=gene-AD39_RS19270;Dbxref=GenBank:WP_001478040.1;Name=WP_001478040.1;Ontology_term=GO:0006364,GO:0008988;gbkey=CDS;gene=rlmF;go_function=rRNA (adenine-N6-)-methyltransferase activity|0008988||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415328.4;locus_tag=AD39_RS19270;product=23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF;protein_id=WP_001478040.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 41557 43782 . - . ID=gene-AD39_RS19265;Name=ybiO;gbkey=Gene;gene=ybiO;gene_biotype=protein_coding;locus_tag=AD39_RS19265;old_locus_tag=AD39_0858 NZ_JJLH01000014.1 Protein Homology CDS 41557 43782 . - 0 ID=cds-WP_032283098.1;Parent=gene-AD39_RS19265;Dbxref=GenBank:WP_032283098.1;Name=WP_032283098.1;Ontology_term=GO:0055085;gbkey=CDS;gene=ybiO;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415329.4;locus_tag=AD39_RS19265;product=mechanosensitive channel protein;protein_id=WP_032283098.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 43899 44621 . - . ID=gene-AD39_RS19260;Name=glnQ;gbkey=Gene;gene=glnQ;gene_biotype=protein_coding;locus_tag=AD39_RS19260;old_locus_tag=AD39_0859 NZ_JJLH01000014.1 Protein Homology CDS 43899 44621 . - 0 ID=cds-WP_000569080.1;Parent=gene-AD39_RS19260;Dbxref=GenBank:WP_000569080.1;Name=WP_000569080.1;Ontology_term=GO:0003333,GO:0005524,GO:0015424;gbkey=CDS;gene=glnQ;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000569103.1;locus_tag=AD39_RS19260;product=glutamine ABC transporter ATP-binding protein GlnQ;protein_id=WP_000569080.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 44618 45277 . - . ID=gene-AD39_RS19255;Name=glnP;gbkey=Gene;gene=glnP;gene_biotype=protein_coding;locus_tag=AD39_RS19255;old_locus_tag=AD39_0860 NZ_JJLH01000014.1 Protein Homology CDS 44618 45277 . - 0 ID=cds-WP_001159065.1;Parent=gene-AD39_RS19255;Dbxref=GenBank:WP_001159065.1;Name=WP_001159065.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=glnP;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015367581.1;locus_tag=AD39_RS19255;product=glutamine ABC transporter permease GlnP;protein_id=WP_001159065.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 45416 46162 . - . ID=gene-AD39_RS19250;Name=glnH;gbkey=Gene;gene=glnH;gene_biotype=protein_coding;locus_tag=AD39_RS19250;old_locus_tag=AD39_0861 NZ_JJLH01000014.1 Protein Homology CDS 45416 46162 . - 0 ID=cds-WP_000843866.1;Parent=gene-AD39_RS19250;Dbxref=GenBank:WP_000843866.1;Name=WP_000843866.1;Ontology_term=GO:1903803,GO:0015599,GO:0043190;gbkey=CDS;gene=glnH;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled L-glutamine transmembrane transporter activity|0015599||IEA;go_process=L-glutamine import across plasma membrane|1903803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123681.1;locus_tag=AD39_RS19250;product=glutamine ABC transporter substrate-binding protein GlnH;protein_id=WP_000843866.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 46566 47069 . - . ID=gene-AD39_RS19245;Name=dps;gbkey=Gene;gene=dps;gene_biotype=protein_coding;gene_synonym=pexB;locus_tag=AD39_RS19245;old_locus_tag=AD39_0862 NZ_JJLH01000014.1 Protein Homology CDS 46566 47069 . - 0 ID=cds-WP_000100800.1;Parent=gene-AD39_RS19245;Dbxref=GenBank:WP_000100800.1;Name=WP_000100800.1;Ontology_term=GO:0016722;gbkey=CDS;gene=dps;go_function=oxidoreductase activity%2C acting on metal ions|0016722||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001730644.1;locus_tag=AD39_RS19245;product=DNA starvation/stationary phase protection protein Dps;protein_id=WP_000100800.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 47368 48255 . - . ID=gene-AD39_RS19240;Name=rhtA;gbkey=Gene;gene=rhtA;gene_biotype=protein_coding;locus_tag=AD39_RS19240;old_locus_tag=AD39_0863 NZ_JJLH01000014.1 Protein Homology CDS 47368 48255 . - 0 ID=cds-WP_001119538.1;Parent=gene-AD39_RS19240;Dbxref=GenBank:WP_001119538.1;Name=WP_001119538.1;gbkey=CDS;gene=rhtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308918.1;locus_tag=AD39_RS19240;product=threonine/homoserine exporter RhtA;protein_id=WP_001119538.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 48490 48555 . + . ID=gene-AD39_RS28890;Name=AD39_RS28890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28890 NZ_JJLH01000014.1 Protein Homology CDS 48490 48555 . + 0 ID=cds-WP_120795379.1;Parent=gene-AD39_RS28890;Dbxref=GenBank:WP_120795379.1;Name=WP_120795379.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518760.1;locus_tag=AD39_RS28890;product=protein YliM;protein_id=WP_120795379.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 48608 49123 . + . ID=gene-AD39_RS19235;Name=ompX;gbkey=Gene;gene=ompX;gene_biotype=protein_coding;locus_tag=AD39_RS19235;old_locus_tag=AD39_0864 NZ_JJLH01000014.1 Protein Homology CDS 48608 49123 . + 0 ID=cds-WP_001295296.1;Parent=gene-AD39_RS19235;Dbxref=GenBank:WP_001295296.1;Name=WP_001295296.1;gbkey=CDS;gene=ompX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308919.1;locus_tag=AD39_RS19235;product=outer membrane protein OmpX;protein_id=WP_001295296.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 49172 50755 . - . ID=gene-AD39_RS19230;Name=opgE;gbkey=Gene;gene=opgE;gene_biotype=protein_coding;locus_tag=AD39_RS19230;old_locus_tag=AD39_0865 NZ_JJLH01000014.1 Protein Homology CDS 49172 50755 . - 0 ID=cds-WP_001054679.1;Parent=gene-AD39_RS19230;Dbxref=GenBank:WP_001054679.1;Name=WP_001054679.1;gbkey=CDS;gene=opgE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415336.1;locus_tag=AD39_RS19230;product=phosphoethanolamine transferase;protein_id=WP_001054679.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 51027 51155 . - . ID=gene-AD39_RS19225;Name=mntS;gbkey=Gene;gene=mntS;gene_biotype=protein_coding;locus_tag=AD39_RS19225;old_locus_tag=AD39_0867 NZ_JJLH01000014.1 Protein Homology CDS 51027 51155 . - 0 ID=cds-WP_001001761.1;Parent=gene-AD39_RS19225;Dbxref=GenBank:WP_001001761.1;Name=WP_001001761.1;gbkey=CDS;gene=mntS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_008439233.1;locus_tag=AD39_RS19225;product=manganase accumulation protein MntS;protein_id=WP_001001761.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 51341 51808 . + . ID=gene-AD39_RS19220;Name=mntR;gbkey=Gene;gene=mntR;gene_biotype=protein_coding;locus_tag=AD39_RS19220;old_locus_tag=AD39_0868 NZ_JJLH01000014.1 Protein Homology CDS 51341 51808 . + 0 ID=cds-WP_000091016.1;Parent=gene-AD39_RS19220;Dbxref=GenBank:WP_000091016.1;Name=WP_000091016.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700,GO:0046914,GO:0046983;gbkey=CDS;gene=mntR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,transition metal ion binding|0046914||IEA,protein dimerization activity|0046983||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415338.1;locus_tag=AD39_RS19220;product=manganese-binding transcriptional regulator MntR;protein_id=WP_000091016.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 51805 52923 . + . ID=gene-AD39_RS19215;Name=ybiR;gbkey=Gene;gene=ybiR;gene_biotype=protein_coding;locus_tag=AD39_RS19215;old_locus_tag=AD39_0869 NZ_JJLH01000014.1 Protein Homology CDS 51805 52923 . + 0 ID=cds-WP_032283100.1;Parent=gene-AD39_RS19215;Dbxref=GenBank:WP_032283100.1;Name=WP_032283100.1;gbkey=CDS;gene=ybiR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308922.1;locus_tag=AD39_RS19215;product=anion transporter;protein_id=WP_032283100.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 52981 53901 . - . ID=gene-AD39_RS19210;Name=ldtB;gbkey=Gene;gene=ldtB;gene_biotype=protein_coding;locus_tag=AD39_RS19210;old_locus_tag=AD39_0870 NZ_JJLH01000014.1 Protein Homology CDS 52981 53901 . - 0 ID=cds-WP_001056384.1;Parent=gene-AD39_RS19210;Dbxref=GenBank:WP_001056384.1;Name=WP_001056384.1;gbkey=CDS;gene=ldtB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308923.1;locus_tag=AD39_RS19210;product=L%2CD-transpeptidase;protein_id=WP_001056384.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 54120 55715 . + . ID=gene-AD39_RS19205;Name=ybiT;gbkey=Gene;gene=ybiT;gene_biotype=protein_coding;locus_tag=AD39_RS19205;old_locus_tag=AD39_0871 NZ_JJLH01000014.1 Protein Homology CDS 54120 55715 . + 0 ID=cds-WP_000961457.1;Parent=gene-AD39_RS19205;Dbxref=GenBank:WP_000961457.1;Name=WP_000961457.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;gene=ybiT;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001522676.1;locus_tag=AD39_RS19205;product=ABC-F family ATPase;protein_id=WP_000961457.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 55895 58258 . - . ID=gene-AD39_RS19200;Name=AD39_RS19200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19200;old_locus_tag=AD39_0872 NZ_JJLH01000014.1 Protein Homology CDS 55895 58258 . - 0 ID=cds-WP_000854249.1;Parent=gene-AD39_RS19200;Dbxref=GenBank:WP_000854249.1;Name=WP_000854249.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019842364.1;locus_tag=AD39_RS19200;product=glycoside hydrolase family 31 protein;protein_id=WP_000854249.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 58273 59574 . - . ID=gene-AD39_RS19195;Name=AD39_RS19195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19195;old_locus_tag=AD39_0873 NZ_JJLH01000014.1 Protein Homology CDS 58273 59574 . - 0 ID=cds-WP_000077532.1;Parent=gene-AD39_RS19195;Dbxref=GenBank:WP_000077532.1;Name=WP_000077532.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005225987.1;locus_tag=AD39_RS19195;product=MFS transporter;protein_id=WP_000077532.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 59812 60972 . + . ID=gene-AD39_RS19185;Name=AD39_RS19185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS19185;old_locus_tag=AD39_0875 NZ_JJLH01000014.1 Protein Homology CDS 59812 60972 . + 0 ID=cds-WP_187439597.1;Parent=gene-AD39_RS19185;Dbxref=GenBank:WP_187439597.1;Name=WP_187439597.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000505360.1;locus_tag=AD39_RS19185;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_187439597.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 60939 62204 . - . ID=gene-AD39_RS19180;Name=ybiU;gbkey=Gene;gene=ybiU;gene_biotype=protein_coding;locus_tag=AD39_RS19180;old_locus_tag=AD39_0876 NZ_JJLH01000014.1 Protein Homology CDS 60939 62204 . - 0 ID=cds-WP_000168795.1;Parent=gene-AD39_RS19180;Dbxref=GenBank:WP_000168795.1;Name=WP_000168795.1;gbkey=CDS;gene=ybiU;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003570920.1;locus_tag=AD39_RS19180;product=DUF1479 domain-containing protein;protein_id=WP_000168795.1;transl_table=11 NZ_JJLH01000014.1 RefSeq pseudogene 62354 63166 . - . ID=gene-AD39_RS19175;Name=ybiV;gbkey=Gene;gene=ybiV;gene_biotype=pseudogene;locus_tag=AD39_RS19175;old_locus_tag=AD39_0877;partial=true;pseudo=true;start_range=.,62354 NZ_JJLH01000014.1 Protein Homology CDS 62354 63166 . - 0 ID=cds-AD39_RS19175;Parent=gene-AD39_RS19175;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0016787;gbkey=CDS;gene=ybiV;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706699.1;locus_tag=AD39_RS19175;partial=true;product=Cof-type HAD-IIB family hydrolase;pseudo=true;start_range=.,62354;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 63312 65744 . - . ID=gene-AD39_RS19170;Name=ybiW;gbkey=Gene;gene=ybiW;gene_biotype=protein_coding;locus_tag=AD39_RS19170;old_locus_tag=AD39_0878 NZ_JJLH01000014.1 Protein Homology CDS 63312 65744 . - 0 ID=cds-WP_032287507.1;Parent=gene-AD39_RS19170;Dbxref=GenBank:WP_032287507.1;Name=WP_032287507.1;gbkey=CDS;gene=ybiW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706700.1;locus_tag=AD39_RS19170;product=glycyl radical protein;protein_id=WP_032287507.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 65750 66649 . - . ID=gene-AD39_RS19165;Name=ybiY;gbkey=Gene;gene=ybiY;gene_biotype=protein_coding;locus_tag=AD39_RS19165;old_locus_tag=AD39_0879 NZ_JJLH01000014.1 Protein Homology CDS 65750 66649 . - 0 ID=cds-WP_001729808.1;Parent=gene-AD39_RS19165;Dbxref=GenBank:WP_001729808.1;Name=WP_001729808.1;gbkey=CDS;gene=ybiY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415345.2;locus_tag=AD39_RS19165;product=glycyl-radical enzyme activating protein;protein_id=WP_001729808.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 66780 67442 . + . ID=gene-AD39_RS19160;Name=fsa;gbkey=Gene;gene=fsa;gene_biotype=protein_coding;locus_tag=AD39_RS19160;old_locus_tag=AD39_0880 NZ_JJLH01000014.1 Protein Homology CDS 66780 67442 . + 0 ID=cds-WP_032283102.1;Parent=gene-AD39_RS19160;Dbxref=GenBank:WP_032283102.1;Name=WP_032283102.1;Ontology_term=GO:0005975,GO:0016832;gbkey=CDS;gene=fsa;go_function=aldehyde-lyase activity|0016832||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308930.3;locus_tag=AD39_RS19160;product=fructose-6-phosphate aldolase;protein_id=WP_032283102.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 67530 68279 . - . ID=gene-AD39_RS19155;Name=moeB;gbkey=Gene;gene=moeB;gene_biotype=protein_coding;locus_tag=AD39_RS19155;old_locus_tag=AD39_0881 NZ_JJLH01000014.1 Protein Homology CDS 67530 68279 . - 0 ID=cds-WP_032283104.1;Parent=gene-AD39_RS19155;Dbxref=GenBank:WP_032283104.1;Name=WP_032283104.1;Ontology_term=GO:0006777,GO:0008641;gbkey=CDS;gene=moeB;go_function=ubiquitin-like modifier activating enzyme activity|0008641||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706703.1;locus_tag=AD39_RS19155;product=molybdopterin-synthase adenylyltransferase MoeB;protein_id=WP_032283104.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 68279 69514 . - . ID=gene-AD39_RS19150;Name=moeA;gbkey=Gene;gene=moeA;gene_biotype=protein_coding;locus_tag=AD39_RS19150;old_locus_tag=AD39_0882 NZ_JJLH01000014.1 Protein Homology CDS 68279 69514 . - 0 ID=cds-WP_000397361.1;Parent=gene-AD39_RS19150;Dbxref=GenBank:WP_000397361.1;Name=WP_000397361.1;Ontology_term=GO:0006777,GO:0032324;gbkey=CDS;gene=moeA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA,molybdopterin cofactor biosynthetic process|0032324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415348.1;locus_tag=AD39_RS19150;product=molybdopterin molybdotransferase MoeA;protein_id=WP_000397361.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 69718 70683 . + . ID=gene-AD39_RS19145;Name=iaaA;gbkey=Gene;gene=iaaA;gene_biotype=protein_coding;locus_tag=AD39_RS19145;old_locus_tag=AD39_0883 NZ_JJLH01000014.1 Protein Homology CDS 69718 70683 . + 0 ID=cds-WP_000513775.1;Parent=gene-AD39_RS19145;Dbxref=GenBank:WP_000513775.1;Name=WP_000513775.1;gbkey=CDS;gene=iaaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415349.1;locus_tag=AD39_RS19145;product=beta-aspartyl-peptidase;protein_id=WP_000513775.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 70670 72541 . + . ID=gene-AD39_RS19140;Name=gsiA;gbkey=Gene;gene=gsiA;gene_biotype=protein_coding;locus_tag=AD39_RS19140;old_locus_tag=AD39_0884 NZ_JJLH01000014.1 Protein Homology CDS 70670 72541 . + 0 ID=cds-WP_001296993.1;Parent=gene-AD39_RS19140;Dbxref=GenBank:WP_001296993.1;Name=WP_001296993.1;Ontology_term=GO:0006810,GO:0000166,GO:0005524;gbkey=CDS;gene=gsiA;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415350.2;locus_tag=AD39_RS19140;product=glutathione ABC transporter ATP-binding protein GsiA;protein_id=WP_001296993.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 72561 74099 . + . ID=gene-AD39_RS19135;Name=gsiB;gbkey=Gene;gene=gsiB;gene_biotype=protein_coding;locus_tag=AD39_RS19135;old_locus_tag=AD39_0885 NZ_JJLH01000014.1 Protein Homology CDS 72561 74099 . + 0 ID=cds-WP_003903629.1;Parent=gene-AD39_RS19135;Dbxref=GenBank:WP_003903629.1;Name=WP_003903629.1;Ontology_term=GO:0034775,GO:0034634,GO:0043190;gbkey=CDS;gene=gsiB;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=glutathione transmembrane transporter activity|0034634||IEA;go_process=glutathione transmembrane transport|0034775||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308936.1;locus_tag=AD39_RS19135;product=glutathione ABC transporter substrate-binding protein GsiB;protein_id=WP_003903629.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 74117 75037 . + . ID=gene-AD39_RS19130;Name=gsiC;gbkey=Gene;gene=gsiC;gene_biotype=protein_coding;locus_tag=AD39_RS19130;old_locus_tag=AD39_0886 NZ_JJLH01000014.1 Protein Homology CDS 74117 75037 . + 0 ID=cds-WP_001430202.1;Parent=gene-AD39_RS19130;Dbxref=GenBank:WP_001430202.1;Name=WP_001430202.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=gsiC;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415352.1;locus_tag=AD39_RS19130;product=glutathione ABC transporter permease GsiC;protein_id=WP_001430202.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 75040 75951 . + . ID=gene-AD39_RS19125;Name=gsiD;gbkey=Gene;gene=gsiD;gene_biotype=protein_coding;locus_tag=AD39_RS19125;old_locus_tag=AD39_0887 NZ_JJLH01000014.1 Protein Homology CDS 75040 75951 . + 0 ID=cds-WP_001236044.1;Parent=gene-AD39_RS19125;Dbxref=GenBank:WP_001236044.1;Name=WP_001236044.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=gsiD;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308938.1;locus_tag=AD39_RS19125;product=glutathione ABC transporter permease GsiD;protein_id=WP_001236044.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 76129 78477 . + . ID=gene-AD39_RS19120;Name=pdeI;gbkey=Gene;gene=pdeI;gene_biotype=protein_coding;locus_tag=AD39_RS19120;old_locus_tag=AD39_0888 NZ_JJLH01000014.1 Protein Homology CDS 76129 78477 . + 0 ID=cds-WP_001398829.1;Parent=gene-AD39_RS19120;Dbxref=GenBank:WP_001398829.1;Name=WP_001398829.1;Ontology_term=GO:0007165,GO:0071111;gbkey=CDS;gene=pdeI;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415354.1;locus_tag=AD39_RS19120;product=sensor domain-containing phosphodiesterase;protein_id=WP_001398829.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 78485 79813 . + . ID=gene-AD39_RS19115;Name=dgcI;gbkey=Gene;gene=dgcI;gene_biotype=protein_coding;locus_tag=AD39_RS19115;old_locus_tag=AD39_0889 NZ_JJLH01000014.1 Protein Homology CDS 78485 79813 . + 0 ID=cds-WP_000086910.1;Parent=gene-AD39_RS19115;Dbxref=GenBank:WP_000086910.1;Name=WP_000086910.1;Ontology_term=GO:0009966,GO:0009975;gbkey=CDS;gene=dgcI;go_function=cyclase activity|0009975||IEA;go_process=regulation of signal transduction|0009966||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308940.1;locus_tag=AD39_RS19115;product=GGDEF domain-containing protein;protein_id=WP_000086910.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 79860 81185 . - . ID=gene-AD39_RS19110;Name=rimO;gbkey=Gene;gene=rimO;gene_biotype=protein_coding;locus_tag=AD39_RS19110;old_locus_tag=AD39_0890 NZ_JJLH01000014.1 Protein Homology CDS 79860 81185 . - 0 ID=cds-WP_000049367.1;Parent=gene-AD39_RS19110;Dbxref=GenBank:WP_000049367.1;Name=WP_000049367.1;Ontology_term=GO:0018339,GO:0008172,GO:0016740,GO:0016782,GO:0051539,GO:1904047,GO:0005737;gbkey=CDS;gene=rimO;go_component=cytoplasm|0005737||IEA;go_function=S-methyltransferase activity|0008172||IEA,transferase activity|0016740||IEA,transferase activity%2C transferring sulphur-containing groups|0016782||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid|0018339||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308942.1;locus_tag=AD39_RS19110;product=30S ribosomal protein S12 methylthiotransferase RimO;protein_id=WP_000049367.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 81398 81781 . + . ID=gene-AD39_RS19105;Name=bssR;gbkey=Gene;gene=bssR;gene_biotype=protein_coding;locus_tag=AD39_RS19105;old_locus_tag=AD39_0891 NZ_JJLH01000014.1 Protein Homology CDS 81398 81781 . + 0 ID=cds-WP_000497137.1;Parent=gene-AD39_RS19105;Dbxref=GenBank:WP_000497137.1;Name=WP_000497137.1;gbkey=CDS;gene=bssR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308943.1;locus_tag=AD39_RS19105;product=biofilm formation regulator BssR;protein_id=WP_000497137.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 81892 83007 . + . ID=gene-AD39_RS19100;Name=yliI;gbkey=Gene;gene=yliI;gene_biotype=protein_coding;locus_tag=AD39_RS19100;old_locus_tag=AD39_0892 NZ_JJLH01000014.1 Protein Homology CDS 81892 83007 . + 0 ID=cds-WP_000555022.1;Parent=gene-AD39_RS19100;Dbxref=GenBank:WP_000555022.1;Name=WP_000555022.1;gbkey=CDS;gene=yliI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415358.1;locus_tag=AD39_RS19100;product=aldose sugar dehydrogenase YliI;protein_id=WP_000555022.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 83004 83630 . - . ID=gene-AD39_RS19095;Name=gstB;gbkey=Gene;gene=gstB;gene_biotype=protein_coding;locus_tag=AD39_RS19095;old_locus_tag=AD39_0893 NZ_JJLH01000014.1 Protein Homology CDS 83004 83630 . - 0 ID=cds-WP_001295292.1;Parent=gene-AD39_RS19095;Dbxref=GenBank:WP_001295292.1;Name=WP_001295292.1;gbkey=CDS;gene=gstB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308945.2;locus_tag=AD39_RS19095;product=glutathione S-transferase GstB;protein_id=WP_001295292.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 83877 85079 . + . ID=gene-AD39_RS19090;Name=dacC;gbkey=Gene;gene=dacC;gene_biotype=protein_coding;locus_tag=AD39_RS19090;old_locus_tag=AD39_0894 NZ_JJLH01000014.1 Protein Homology CDS 83877 85079 . + 0 ID=cds-WP_000195961.1;Parent=gene-AD39_RS19090;Dbxref=GenBank:WP_000195961.1;Name=WP_000195961.1;gbkey=CDS;gene=dacC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308946.1;locus_tag=AD39_RS19090;product=serine-type D-Ala-D-Ala carboxypeptidase;protein_id=WP_000195961.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 85126 85884 . - . ID=gene-AD39_RS19085;Name=deoR;gbkey=Gene;gene=deoR;gene_biotype=protein_coding;locus_tag=AD39_RS19085;old_locus_tag=AD39_0895 NZ_JJLH01000014.1 Protein Homology CDS 85126 85884 . - 0 ID=cds-WP_032283106.1;Parent=gene-AD39_RS19085;Dbxref=GenBank:WP_032283106.1;Name=WP_032283106.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=deoR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308947.1;locus_tag=AD39_RS19085;product=DNA-binding transcriptional repressor DeoR;protein_id=WP_032283106.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 85942 86538 . - . ID=gene-AD39_RS19080;Name=ybjG;gbkey=Gene;gene=ybjG;gene_biotype=protein_coding;locus_tag=AD39_RS19080;old_locus_tag=AD39_0896 NZ_JJLH01000014.1 Protein Homology CDS 85942 86538 . - 0 ID=cds-WP_000892317.1;Parent=gene-AD39_RS19080;Dbxref=GenBank:WP_000892317.1;Name=WP_000892317.1;Ontology_term=GO:0050380,GO:0005886;gbkey=CDS;gene=ybjG;go_component=plasma membrane|0005886||IEA;go_function=undecaprenyl-diphosphatase activity|0050380||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308948.1;locus_tag=AD39_RS19080;product=undecaprenyl-diphosphate phosphatase;protein_id=WP_000892317.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 86823 88055 . + . ID=gene-AD39_RS19075;Name=mdfA;gbkey=Gene;gene=mdfA;gene_biotype=protein_coding;locus_tag=AD39_RS19075;old_locus_tag=AD39_0897 NZ_JJLH01000014.1 Protein Homology CDS 86823 88055 . + 0 ID=cds-WP_032283107.1;Parent=gene-AD39_RS19075;Dbxref=GenBank:WP_032283107.1;Name=WP_032283107.1;gbkey=CDS;gene=mdfA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308949.1;locus_tag=AD39_RS19075;product=multidrug efflux MFS transporter MdfA;protein_id=WP_032283107.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 88096 88380 . - . ID=gene-AD39_RS19070;Name=ybjH;gbkey=Gene;gene=ybjH;gene_biotype=protein_coding;locus_tag=AD39_RS19070;old_locus_tag=AD39_0898 NZ_JJLH01000014.1 Protein Homology CDS 88096 88380 . - 0 ID=cds-WP_000605478.1;Parent=gene-AD39_RS19070;Dbxref=GenBank:WP_000605478.1;Name=WP_000605478.1;gbkey=CDS;gene=ybjH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415364.1;locus_tag=AD39_RS19070;product=protein YbjH;protein_id=WP_000605478.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 88466 89281 . - . ID=gene-AD39_RS19065;Name=ybjI;gbkey=Gene;gene=ybjI;gene_biotype=protein_coding;locus_tag=AD39_RS19065;old_locus_tag=AD39_0899 NZ_JJLH01000014.1 Protein Homology CDS 88466 89281 . - 0 ID=cds-WP_001299614.1;Parent=gene-AD39_RS19065;Dbxref=GenBank:WP_001299614.1;Name=WP_001299614.1;gbkey=CDS;gene=ybjI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415365.4;locus_tag=AD39_RS19065;product=5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase;protein_id=WP_001299614.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 89281 90489 . - . ID=gene-AD39_RS19060;Name=ybjJ;gbkey=Gene;gene=ybjJ;gene_biotype=protein_coding;locus_tag=AD39_RS19060;old_locus_tag=AD39_0900 NZ_JJLH01000014.1 Protein Homology CDS 89281 90489 . - 0 ID=cds-WP_000217859.1;Parent=gene-AD39_RS19060;Dbxref=GenBank:WP_000217859.1;Name=WP_000217859.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=ybjJ;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415366.1;locus_tag=AD39_RS19060;product=MFS transporter;protein_id=WP_000217859.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 90573 91109 . + . ID=gene-AD39_RS19055;Name=rcdA;gbkey=Gene;gene=rcdA;gene_biotype=protein_coding;locus_tag=AD39_RS19055;old_locus_tag=AD39_0901 NZ_JJLH01000014.1 Protein Homology CDS 90573 91109 . + 0 ID=cds-WP_001297003.1;Parent=gene-AD39_RS19055;Dbxref=GenBank:WP_001297003.1;Name=WP_001297003.1;gbkey=CDS;gene=rcdA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308953.1;locus_tag=AD39_RS19055;product=DNA-binding transcriptional regulator RcdA;protein_id=WP_001297003.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 91284 92969 . - . ID=gene-AD39_RS19050;Name=ybjL;gbkey=Gene;gene=ybjL;gene_biotype=protein_coding;locus_tag=AD39_RS19050;old_locus_tag=AD39_0902 NZ_JJLH01000014.1 Protein Homology CDS 91284 92969 . - 0 ID=cds-WP_001024876.1;Parent=gene-AD39_RS19050;Dbxref=GenBank:WP_001024876.1;Name=WP_001024876.1;Ontology_term=GO:0006813,GO:0008324;gbkey=CDS;gene=ybjL;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001024888.1;locus_tag=AD39_RS19050;product=aspartate:alanine antiporter;protein_id=WP_001024876.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 93239 93616 . + . ID=gene-AD39_RS19045;Name=ybjM;gbkey=Gene;gene=ybjM;gene_biotype=protein_coding;locus_tag=AD39_RS19045;old_locus_tag=AD39_0903 NZ_JJLH01000014.1 Protein Homology CDS 93239 93616 . + 0 ID=cds-WP_000681108.1;Parent=gene-AD39_RS19045;Dbxref=GenBank:WP_000681108.1;Name=WP_000681108.1;gbkey=CDS;gene=ybjM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308955.1;locus_tag=AD39_RS19045;product=inner membrane protein YbjM;protein_id=WP_000681108.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 93646 93903 . - . ID=gene-AD39_RS19040;Name=grxA;gbkey=Gene;gene=grxA;gene_biotype=protein_coding;locus_tag=AD39_RS19040;old_locus_tag=AD39_0904 NZ_JJLH01000014.1 Protein Homology CDS 93646 93903 . - 0 ID=cds-WP_001195231.1;Parent=gene-AD39_RS19040;Dbxref=GenBank:WP_001195231.1;Name=WP_001195231.1;gbkey=CDS;gene=grxA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308956.1;locus_tag=AD39_RS19040;product=glutaredoxin 1;protein_id=WP_001195231.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 94063 94350 . + . ID=gene-AD39_RS19035;Name=ybjC;gbkey=Gene;gene=ybjC;gene_biotype=protein_coding;locus_tag=AD39_RS19035;old_locus_tag=AD39_0905 NZ_JJLH01000014.1 Protein Homology CDS 94063 94350 . + 0 ID=cds-WP_001201576.1;Parent=gene-AD39_RS19035;Dbxref=GenBank:WP_001201576.1;Name=WP_001201576.1;gbkey=CDS;gene=ybjC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308957.1;locus_tag=AD39_RS19035;product=DUF1418 family protein;protein_id=WP_001201576.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 94334 95056 . + . ID=gene-AD39_RS19030;Name=nfsA;gbkey=Gene;gene=nfsA;gene_biotype=protein_coding;locus_tag=AD39_RS19030;old_locus_tag=AD39_0906 NZ_JJLH01000014.1 Protein Homology CDS 94334 95056 . + 0 ID=cds-WP_000189159.1;Parent=gene-AD39_RS19030;Dbxref=GenBank:WP_000189159.1;Name=WP_000189159.1;gbkey=CDS;gene=nfsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415372.1;locus_tag=AD39_RS19030;product=nitroreductase NfsA;protein_id=WP_000189159.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 95117 96019 . + . ID=gene-AD39_RS19025;Name=rimK;gbkey=Gene;gene=rimK;gene_biotype=protein_coding;locus_tag=AD39_RS19025;old_locus_tag=AD39_0907 NZ_JJLH01000014.1 Protein Homology CDS 95117 96019 . + 0 ID=cds-WP_000684321.1;Parent=gene-AD39_RS19025;Dbxref=GenBank:WP_000684321.1;Name=WP_000684321.1;Ontology_term=GO:0036211,GO:0005524,GO:0046872;gbkey=CDS;gene=rimK;go_function=ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308959.1;locus_tag=AD39_RS19025;product=30S ribosomal protein S6--L-glutamate ligase;protein_id=WP_000684321.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 96107 96583 . + . ID=gene-AD39_RS19020;Name=ybjN;gbkey=Gene;gene=ybjN;gene_biotype=protein_coding;locus_tag=AD39_RS19020;old_locus_tag=AD39_0908 NZ_JJLH01000014.1 Protein Homology CDS 96107 96583 . + 0 ID=cds-WP_000203025.1;Parent=gene-AD39_RS19020;Dbxref=GenBank:WP_000203025.1;Name=WP_000203025.1;gbkey=CDS;gene=ybjN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308960.1;locus_tag=AD39_RS19020;product=YbjN domain-containing protein;protein_id=WP_000203025.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 96934 98046 . + . ID=gene-AD39_RS19015;Name=potF;gbkey=Gene;gene=potF;gene_biotype=protein_coding;locus_tag=AD39_RS19015;old_locus_tag=AD39_0910 NZ_JJLH01000014.1 Protein Homology CDS 96934 98046 . + 0 ID=cds-WP_000126097.1;Parent=gene-AD39_RS19015;Dbxref=GenBank:WP_000126097.1;Name=WP_000126097.1;Ontology_term=GO:0015846,GO:0019808,GO:0042597;gbkey=CDS;gene=potF;go_component=periplasmic space|0042597||IEA;go_function=polyamine binding|0019808||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415375.1;locus_tag=AD39_RS19015;product=spermidine/putrescine ABC transporter substrate-binding protein PotF;protein_id=WP_000126097.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 98141 99274 . + . ID=gene-AD39_RS19010;Name=potG;gbkey=Gene;gene=potG;gene_biotype=protein_coding;locus_tag=AD39_RS19010;old_locus_tag=AD39_0911 NZ_JJLH01000014.1 Protein Homology CDS 98141 99274 . + 0 ID=cds-WP_000996017.1;Parent=gene-AD39_RS19010;Dbxref=GenBank:WP_000996017.1;Name=WP_000996017.1;Ontology_term=GO:0015846,GO:0055085,GO:0005524,GO:0015417,GO:0022857,GO:0043190;gbkey=CDS;gene=potG;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type polyamine transporter activity|0015417||IEA,transmembrane transporter activity|0022857||IEA;go_process=polyamine transport|0015846||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000996010.1;locus_tag=AD39_RS19010;product=putrescine ABC transporter ATP-binding subunit PotG;protein_id=WP_000996017.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 99284 100237 . + . ID=gene-AD39_RS19005;Name=potH;gbkey=Gene;gene=potH;gene_biotype=protein_coding;locus_tag=AD39_RS19005;old_locus_tag=AD39_0912 NZ_JJLH01000014.1 Protein Homology CDS 99284 100237 . + 0 ID=cds-WP_000105438.1;Parent=gene-AD39_RS19005;Dbxref=GenBank:WP_000105438.1;Name=WP_000105438.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=potH;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415377.1;locus_tag=AD39_RS19005;product=putrescine ABC transporter permease PotH;protein_id=WP_000105438.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 100234 101079 . + . ID=gene-AD39_RS19000;Name=potI;gbkey=Gene;gene=potI;gene_biotype=protein_coding;locus_tag=AD39_RS19000;old_locus_tag=AD39_0913 NZ_JJLH01000014.1 Protein Homology CDS 100234 101079 . + 0 ID=cds-WP_001061657.1;Parent=gene-AD39_RS19000;Dbxref=GenBank:WP_001061657.1;Name=WP_001061657.1;Ontology_term=GO:0055085;gbkey=CDS;gene=potI;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415378.1;locus_tag=AD39_RS19000;product=putrescine ABC transporter permease PotI;protein_id=WP_001061657.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 101139 101627 . + . ID=gene-AD39_RS18995;Name=ybjO;gbkey=Gene;gene=ybjO;gene_biotype=protein_coding;locus_tag=AD39_RS18995;old_locus_tag=AD39_0914 NZ_JJLH01000014.1 Protein Homology CDS 101139 101627 . + 0 ID=cds-WP_000389260.1;Parent=gene-AD39_RS18995;Dbxref=GenBank:WP_000389260.1;Name=WP_000389260.1;gbkey=CDS;gene=ybjO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308965.1;locus_tag=AD39_RS18995;product=YbjO family protein;protein_id=WP_000389260.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 101668 102795 . + . ID=gene-AD39_RS18990;Name=rlmC;gbkey=Gene;gene=rlmC;gene_biotype=protein_coding;locus_tag=AD39_RS18990;old_locus_tag=AD39_0915 NZ_JJLH01000014.1 Protein Homology CDS 101668 102795 . + 0 ID=cds-WP_001149732.1;Parent=gene-AD39_RS18990;Dbxref=GenBank:WP_001149732.1;Name=WP_001149732.1;Ontology_term=GO:0016070,GO:0008649;gbkey=CDS;gene=rlmC;go_function=rRNA methyltransferase activity|0008649||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706739.1;locus_tag=AD39_RS18990;product=23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;protein_id=WP_001149732.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 102970 103701 . - . ID=gene-AD39_RS18985;Name=artJ;gbkey=Gene;gene=artJ;gene_biotype=protein_coding;locus_tag=AD39_RS18985;old_locus_tag=AD39_0916 NZ_JJLH01000014.1 Protein Homology CDS 102970 103701 . - 0 ID=cds-WP_001295905.1;Parent=gene-AD39_RS18985;Dbxref=GenBank:WP_001295905.1;Name=WP_001295905.1;gbkey=CDS;gene=artJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415381.1;locus_tag=AD39_RS18985;product=arginine ABC transporter substrate-binding protein ArtJ;protein_id=WP_001295905.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 103993 104661 . - . ID=gene-AD39_RS18980;Name=artM;gbkey=Gene;gene=artM;gene_biotype=protein_coding;locus_tag=AD39_RS18980;old_locus_tag=AD39_0917 NZ_JJLH01000014.1 Protein Homology CDS 103993 104661 . - 0 ID=cds-WP_000464491.1;Parent=gene-AD39_RS18980;Dbxref=GenBank:WP_000464491.1;Name=WP_000464491.1;Ontology_term=GO:0071705,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=artM;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=nitrogen compound transport|0071705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308971.1;locus_tag=AD39_RS18980;product=arginine ABC transporter permease ArtM;protein_id=WP_000464491.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 104661 105377 . - . ID=gene-AD39_RS18975;Name=artQ;gbkey=Gene;gene=artQ;gene_biotype=protein_coding;locus_tag=AD39_RS18975;old_locus_tag=AD39_0918 NZ_JJLH01000014.1 Protein Homology CDS 104661 105377 . - 0 ID=cds-WP_001001691.1;Parent=gene-AD39_RS18975;Dbxref=GenBank:WP_001001691.1;Name=WP_001001691.1;Ontology_term=GO:0055085,GO:0071705,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=artQ;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA,nitrogen compound transport|0071705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415383.1;locus_tag=AD39_RS18975;product=arginine ABC transporter permease ArtQ;protein_id=WP_001001691.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 105384 106115 . - . ID=gene-AD39_RS18970;Name=artI;gbkey=Gene;gene=artI;gene_biotype=protein_coding;locus_tag=AD39_RS18970;old_locus_tag=AD39_0919 NZ_JJLH01000014.1 Protein Homology CDS 105384 106115 . - 0 ID=cds-WP_000756569.1;Parent=gene-AD39_RS18970;Dbxref=GenBank:WP_000756569.1;Name=WP_000756569.1;Ontology_term=GO:0015424,GO:0043190;gbkey=CDS;gene=artI;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type amino acid transporter activity|0015424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415384.1;locus_tag=AD39_RS18970;product=arginine ABC transporter substrate-binding protein ArtI;protein_id=WP_000756569.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 106133 106861 . - . ID=gene-AD39_RS18965;Name=artP;gbkey=Gene;gene=artP;gene_biotype=protein_coding;locus_tag=AD39_RS18965;old_locus_tag=AD39_0920 NZ_JJLH01000014.1 Protein Homology CDS 106133 106861 . - 0 ID=cds-WP_032283109.1;Parent=gene-AD39_RS18965;Dbxref=GenBank:WP_032283109.1;Name=WP_032283109.1;Ontology_term=GO:0003333,GO:0005524,GO:0015424,GO:0043190;gbkey=CDS;gene=artP;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742668.1;locus_tag=AD39_RS18965;product=arginine ABC transporter ATP-binding protein ArtP;protein_id=WP_032283109.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 107079 107594 . - . ID=gene-AD39_RS18960;Name=ybjP;gbkey=Gene;gene=ybjP;gene_biotype=protein_coding;locus_tag=AD39_RS18960;old_locus_tag=AD39_0921 NZ_JJLH01000014.1 Protein Homology CDS 107079 107594 . - 0 ID=cds-WP_001466987.1;Parent=gene-AD39_RS18960;Dbxref=GenBank:WP_001466987.1;Name=WP_001466987.1;gbkey=CDS;gene=ybjP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415386.1;locus_tag=AD39_RS18960;product=lipoprotein;protein_id=WP_001466987.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 107720 108043 . + . ID=gene-AD39_RS18955;Name=ybjQ;gbkey=Gene;gene=ybjQ;gene_biotype=protein_coding;locus_tag=AD39_RS18955;old_locus_tag=AD39_0922 NZ_JJLH01000014.1 Protein Homology CDS 107720 108043 . + 0 ID=cds-WP_001160737.1;Parent=gene-AD39_RS18955;Dbxref=GenBank:WP_001160737.1;Name=WP_001160737.1;gbkey=CDS;gene=ybjQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308979.1;locus_tag=AD39_RS18955;product=heavy metal-binding domain-containing protein;protein_id=WP_001160737.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 108040 108870 . + . ID=gene-AD39_RS18950;Name=amiD;gbkey=Gene;gene=amiD;gene_biotype=protein_coding;locus_tag=AD39_RS18950;old_locus_tag=AD39_0923 NZ_JJLH01000014.1 Protein Homology CDS 108040 108870 . + 0 ID=cds-WP_032283110.1;Parent=gene-AD39_RS18950;Dbxref=GenBank:WP_032283110.1;Name=WP_032283110.1;gbkey=CDS;gene=amiD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308980.1;locus_tag=AD39_RS18950;product=N-acetylmuramoyl-L-alanine amidase AmiD;protein_id=WP_032283110.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 108867 109880 . - . ID=gene-AD39_RS18945;Name=ybjS;gbkey=Gene;gene=ybjS;gene_biotype=protein_coding;locus_tag=AD39_RS18945;old_locus_tag=AD39_0924 NZ_JJLH01000014.1 Protein Homology CDS 108867 109880 . - 0 ID=cds-WP_001338420.1;Parent=gene-AD39_RS18945;Dbxref=GenBank:WP_001338420.1;Name=WP_001338420.1;Ontology_term=GO:0016491,GO:0051287,GO:0070403;gbkey=CDS;gene=ybjS;go_function=oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415389.2;locus_tag=AD39_RS18945;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_001338420.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 109979 111409 . - . ID=gene-AD39_RS18940;Name=ybjT;gbkey=Gene;gene=ybjT;gene_biotype=protein_coding;locus_tag=AD39_RS18940;old_locus_tag=AD39_0925 NZ_JJLH01000014.1 Protein Homology CDS 109979 111409 . - 0 ID=cds-WP_001136554.1;Parent=gene-AD39_RS18940;Dbxref=GenBank:WP_001136554.1;Name=WP_001136554.1;gbkey=CDS;gene=ybjT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415390.4;locus_tag=AD39_RS18940;product=SDR family oxidoreductase;protein_id=WP_001136554.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 111420 112421 . - . ID=gene-AD39_RS18935;Name=ltaE;gbkey=Gene;gene=ltaE;gene_biotype=protein_coding;locus_tag=AD39_RS18935;old_locus_tag=AD39_0926 NZ_JJLH01000014.1 Protein Homology CDS 111420 112421 . - 0 ID=cds-WP_000566372.1;Parent=gene-AD39_RS18935;Dbxref=GenBank:WP_000566372.1;Name=WP_000566372.1;Ontology_term=GO:0006520,GO:0016829;gbkey=CDS;gene=ltaE;go_function=lyase activity|0016829||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706751.1;locus_tag=AD39_RS18935;product=low-specificity L-threonine aldolase;protein_id=WP_000566372.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 112458 114176 . - . ID=gene-AD39_RS18930;Name=poxB;gbkey=Gene;gene=poxB;gene_biotype=protein_coding;locus_tag=AD39_RS18930;old_locus_tag=AD39_0927 NZ_JJLH01000014.1 Protein Homology CDS 112458 114176 . - 0 ID=cds-WP_032287508.1;Parent=gene-AD39_RS18930;Dbxref=GenBank:WP_032287508.1;Name=WP_032287508.1;Ontology_term=GO:0006090,GO:0000287,GO:0030976,GO:0052737;gbkey=CDS;gene=poxB;go_function=magnesium ion binding|0000287||IEA,thiamine pyrophosphate binding|0030976||IEA,pyruvate dehydrogenase (quinone) activity|0052737||IEA;go_process=pyruvate metabolic process|0006090||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415392.1;locus_tag=AD39_RS18930;product=ubiquinone-dependent pyruvate dehydrogenase;protein_id=WP_032287508.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 114309 115277 . - . ID=gene-AD39_RS18925;Name=hcr;gbkey=Gene;gene=hcr;gene_biotype=protein_coding;locus_tag=AD39_RS18925;old_locus_tag=AD39_0928 NZ_JJLH01000014.1 Protein Homology CDS 114309 115277 . - 0 ID=cds-WP_000178677.1;Parent=gene-AD39_RS18925;Dbxref=GenBank:WP_000178677.1;Name=WP_000178677.1;Ontology_term=GO:0016491,GO:0051536;gbkey=CDS;gene=hcr;go_function=oxidoreductase activity|0016491||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415393.1;locus_tag=AD39_RS18925;product=NADH oxidoreductase;protein_id=WP_000178677.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 115289 116941 . - . ID=gene-AD39_RS18920;Name=hcp;gbkey=Gene;gene=hcp;gene_biotype=protein_coding;gene_synonym=priS;locus_tag=AD39_RS18920;old_locus_tag=AD39_0929 NZ_JJLH01000014.1 Protein Homology CDS 115289 116941 . - 0 ID=cds-WP_000458817.1;Parent=gene-AD39_RS18920;Dbxref=GenBank:WP_000458817.1;Name=WP_000458817.1;Ontology_term=GO:0016661,GO:0051536;gbkey=CDS;gene=hcp;go_function=oxidoreductase activity%2C acting on other nitrogenous compounds as donors|0016661||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122080.1;locus_tag=AD39_RS18920;product=hydroxylamine reductase;protein_id=WP_000458817.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 117085 117984 . - . ID=gene-AD39_RS18915;Name=lysO;gbkey=Gene;gene=lysO;gene_biotype=protein_coding;locus_tag=AD39_RS18915;old_locus_tag=AD39_0930 NZ_JJLH01000014.1 Protein Homology CDS 117085 117984 . - 0 ID=cds-WP_000491127.1;Parent=gene-AD39_RS18915;Dbxref=GenBank:WP_000491127.1;Name=WP_000491127.1;gbkey=CDS;gene=lysO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415395.2;locus_tag=AD39_RS18915;product=L-lysine exporter LysO;protein_id=WP_000491127.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 118483 119178 . - . ID=gene-AD39_RS18910;Name=aqpZ;gbkey=Gene;gene=aqpZ;gene_biotype=protein_coding;locus_tag=AD39_RS18910;old_locus_tag=AD39_0931 NZ_JJLH01000014.1 Protein Homology CDS 118483 119178 . - 0 ID=cds-WP_001298299.1;Parent=gene-AD39_RS18910;Dbxref=GenBank:WP_001298299.1;Name=WP_001298299.1;Ontology_term=GO:0006833,GO:0015250;gbkey=CDS;gene=aqpZ;go_function=water channel activity|0015250||IEA;go_process=water transport|0006833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415396.1;locus_tag=AD39_RS18910;product=aquaporin Z;protein_id=WP_001298299.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 119604 121262 . + . ID=gene-AD39_RS18905;Name=ybjD;gbkey=Gene;gene=ybjD;gene_biotype=protein_coding;locus_tag=AD39_RS18905;old_locus_tag=AD39_0932 NZ_JJLH01000014.1 Protein Homology CDS 119604 121262 . + 0 ID=cds-WP_000599806.1;Parent=gene-AD39_RS18905;Dbxref=GenBank:WP_000599806.1;Name=WP_000599806.1;gbkey=CDS;gene=ybjD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706761.1;locus_tag=AD39_RS18905;product=ATP-dependent endonuclease;protein_id=WP_000599806.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 121259 122215 . - . ID=gene-AD39_RS18900;Name=ybjX;gbkey=Gene;gene=ybjX;gene_biotype=protein_coding;locus_tag=AD39_RS18900;old_locus_tag=AD39_0933 NZ_JJLH01000014.1 Protein Homology CDS 121259 122215 . - 0 ID=cds-WP_148725090.1;Parent=gene-AD39_RS18900;Dbxref=GenBank:WP_148725090.1;Name=WP_148725090.1;gbkey=CDS;gene=ybjX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001322270.1;locus_tag=AD39_RS18900;product=VirK/YbjX family protein;protein_id=WP_148725090.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 122366 123481 . + . ID=gene-AD39_RS18895;Name=macA;gbkey=Gene;gene=macA;gene_biotype=protein_coding;locus_tag=AD39_RS18895;old_locus_tag=AD39_0934 NZ_JJLH01000014.1 Protein Homology CDS 122366 123481 . + 0 ID=cds-WP_000746460.1;Parent=gene-AD39_RS18895;Dbxref=GenBank:WP_000746460.1;Name=WP_000746460.1;Ontology_term=GO:1990961,GO:0022857,GO:0019898,GO:1990195;gbkey=CDS;gene=macA;go_component=extrinsic component of membrane|0019898||IEA,macrolide transmembrane transporter complex|1990195||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308991.2;locus_tag=AD39_RS18895;product=macrolide transporter subunit MacA;protein_id=WP_000746460.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 123478 125424 . + . ID=gene-AD39_RS18890;Name=macB;gbkey=Gene;gene=macB;gene_biotype=protein_coding;locus_tag=AD39_RS18890;old_locus_tag=AD39_0935 NZ_JJLH01000014.1 Protein Homology CDS 123478 125424 . + 0 ID=cds-WP_000188193.1;Parent=gene-AD39_RS18890;Dbxref=GenBank:WP_000188193.1;Name=WP_000188193.1;Ontology_term=GO:0005524,GO:0022857,GO:1990195;gbkey=CDS;gene=macB;go_component=macrolide transmembrane transporter complex|1990195||IEA;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308992.1;locus_tag=AD39_RS18890;product=macrolide ABC transporter ATP-binding protein/permease MacB;protein_id=WP_000188193.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 125497 125721 . - . ID=gene-AD39_RS18885;Name=cspD;gbkey=Gene;gene=cspD;gene_biotype=protein_coding;locus_tag=AD39_RS18885;old_locus_tag=AD39_0936 NZ_JJLH01000014.1 Protein Homology CDS 125497 125721 . - 0 ID=cds-WP_000410785.1;Parent=gene-AD39_RS18885;Dbxref=GenBank:WP_000410785.1;Name=WP_000410785.1;gbkey=CDS;gene=cspD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308993.1;locus_tag=AD39_RS18885;product=cold shock-like protein CspD;protein_id=WP_000410785.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 125871 125945 . + . ID=gene-AD39_RS29635;Name=yljB;gbkey=Gene;gene=yljB;gene_biotype=protein_coding;locus_tag=AD39_RS29635 NZ_JJLH01000014.1 Protein Homology CDS 125871 125945 . + 0 ID=cds-WP_001406719.1;Parent=gene-AD39_RS29635;Dbxref=GenBank:WP_001406719.1;Name=WP_001406719.1;gbkey=CDS;gene=yljB;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051179.1;locus_tag=AD39_RS29635;product=protein YljB;protein_id=WP_001406719.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 126044 126364 . + . ID=gene-AD39_RS18880;Name=clpS;gbkey=Gene;gene=clpS;gene_biotype=protein_coding;locus_tag=AD39_RS18880;old_locus_tag=AD39_0937 NZ_JJLH01000014.1 Protein Homology CDS 126044 126364 . + 0 ID=cds-WP_000520781.1;Parent=gene-AD39_RS18880;Dbxref=GenBank:WP_000520781.1;Name=WP_000520781.1;Ontology_term=GO:0006508;gbkey=CDS;gene=clpS;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128368.1;locus_tag=AD39_RS18880;product=ATP-dependent Clp protease adapter ClpS;protein_id=WP_000520781.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 126395 128671 . + . ID=gene-AD39_RS18875;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=AD39_RS18875;old_locus_tag=AD39_0938 NZ_JJLH01000014.1 Protein Homology CDS 126395 128671 . + 0 ID=cds-WP_000934041.1;Parent=gene-AD39_RS18875;Dbxref=GenBank:WP_000934041.1;Name=WP_000934041.1;Ontology_term=GO:0043335,GO:0005524,GO:0016887;gbkey=CDS;gene=clpA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein unfolding|0043335||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308995.1;locus_tag=AD39_RS18875;product=ATP-dependent Clp protease ATP-binding subunit ClpA;protein_id=WP_000934041.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 129015 129102 . - . ID=gene-AD39_RS18870;Name=AD39_RS18870;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS18870;old_locus_tag=AD39_0939 NZ_JJLH01000014.1 tRNAscan-SE tRNA 129015 129102 . - . ID=rna-AD39_RS18870;Parent=gene-AD39_RS18870;anticodon=(pos:complement(129066..129068));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS18870;product=tRNA-Ser NZ_JJLH01000014.1 tRNAscan-SE exon 129015 129102 . - . ID=exon-AD39_RS18870-1;Parent=rna-AD39_RS18870;anticodon=(pos:complement(129066..129068));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS18870;product=tRNA-Ser NZ_JJLH01000014.1 RefSeq gene 129356 129574 . - . ID=gene-AD39_RS18865;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;locus_tag=AD39_RS18865;old_locus_tag=AD39_0940 NZ_JJLH01000014.1 Protein Homology CDS 129356 129574 . - 0 ID=cds-WP_001040187.1;Parent=gene-AD39_RS18865;Dbxref=GenBank:WP_001040187.1;Name=WP_001040187.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infA;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001040186.1;locus_tag=AD39_RS18865;product=translation initiation factor IF-1;protein_id=WP_001040187.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 129859 130563 . - . ID=gene-AD39_RS18860;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=AD39_RS18860;old_locus_tag=AD39_0941 NZ_JJLH01000014.1 Protein Homology CDS 129859 130563 . - 0 ID=cds-WP_001241678.1;Parent=gene-AD39_RS18860;Dbxref=GenBank:WP_001241678.1;Name=WP_001241678.1;Ontology_term=GO:0006508,GO:0008914;gbkey=CDS;gene=aat;go_function=leucyl-tRNA--protein transferase activity|0008914||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415405.1;locus_tag=AD39_RS18860;product=leucyl/phenylalanyl-tRNA--protein transferase;protein_id=WP_001241678.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 130605 132326 . - . ID=gene-AD39_RS18855;Name=cydC;gbkey=Gene;gene=cydC;gene_biotype=protein_coding;locus_tag=AD39_RS18855;old_locus_tag=AD39_0942 NZ_JJLH01000014.1 Protein Homology CDS 130605 132326 . - 0 ID=cds-WP_001202188.1;Parent=gene-AD39_RS18855;Dbxref=GenBank:WP_001202188.1;Name=WP_001202188.1;Ontology_term=GO:0045454,GO:0005524,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;gene=cydC;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415406.1;locus_tag=AD39_RS18855;product=heme ABC transporter ATP-binding protein/permease CydC;protein_id=WP_001202188.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 132327 134093 . - . ID=gene-AD39_RS18850;Name=cydD;gbkey=Gene;gene=cydD;gene_biotype=protein_coding;locus_tag=AD39_RS18850;old_locus_tag=AD39_0943 NZ_JJLH01000014.1 Protein Homology CDS 132327 134093 . - 0 ID=cds-WP_001043618.1;Parent=gene-AD39_RS18850;Dbxref=GenBank:WP_001043618.1;Name=WP_001043618.1;Ontology_term=GO:0005524,GO:0140359,GO:0016020;gbkey=CDS;gene=cydD;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308999.1;locus_tag=AD39_RS18850;product=heme ABC transporter permease/ATP-binding protein CydD;protein_id=WP_001043618.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 134216 135181 . - . ID=gene-AD39_RS18845;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;locus_tag=AD39_RS18845;old_locus_tag=AD39_0944 NZ_JJLH01000014.1 Protein Homology CDS 134216 135181 . - 0 ID=cds-WP_000537418.1;Parent=gene-AD39_RS18845;Dbxref=GenBank:WP_000537418.1;Name=WP_000537418.1;Ontology_term=GO:0019430,GO:0004791;gbkey=CDS;gene=trxB;go_function=thioredoxin-disulfide reductase (NADPH) activity|0004791||IEA;go_process=removal of superoxide radicals|0019430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309000.1;locus_tag=AD39_RS18845;product=thioredoxin-disulfide reductase;protein_id=WP_000537418.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 135726 136220 . + . ID=gene-AD39_RS18840;Name=lrp;gbkey=Gene;gene=lrp;gene_biotype=protein_coding;locus_tag=AD39_RS18840;old_locus_tag=AD39_0946 NZ_JJLH01000014.1 Protein Homology CDS 135726 136220 . + 0 ID=cds-WP_000228473.1;Parent=gene-AD39_RS18840;Dbxref=GenBank:WP_000228473.1;Name=WP_000228473.1;gbkey=CDS;gene=lrp;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001591745.1;locus_tag=AD39_RS18840;product=leucine-responsive transcriptional regulator Lrp;protein_id=WP_000228473.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 136355 140422 . + . ID=gene-AD39_RS18835;Name=ftsK;gbkey=Gene;gene=ftsK;gene_biotype=protein_coding;locus_tag=AD39_RS18835;old_locus_tag=AD39_0947 NZ_JJLH01000014.1 Protein Homology CDS 136355 140422 . + 0 ID=cds-WP_032287509.1;Parent=gene-AD39_RS18835;Dbxref=GenBank:WP_032287509.1;Name=WP_032287509.1;Ontology_term=GO:0003677,GO:0005524;gbkey=CDS;gene=ftsK;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415410.1;locus_tag=AD39_RS18835;product=DNA translocase FtsK;protein_id=WP_032287509.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 140577 141188 . + . ID=gene-AD39_RS18830;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;locus_tag=AD39_RS18830;old_locus_tag=AD39_0948 NZ_JJLH01000014.1 Protein Homology CDS 140577 141188 . + 0 ID=cds-WP_001372611.1;Parent=gene-AD39_RS18830;Dbxref=GenBank:WP_001372611.1;Name=WP_001372611.1;Ontology_term=GO:0042953,GO:0042597;gbkey=CDS;gene=lolA;go_component=periplasmic space|0042597||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010354356.1;locus_tag=AD39_RS18830;product=outer membrane lipoprotein chaperone LolA;protein_id=WP_001372611.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 141199 142542 . + . ID=gene-AD39_RS18825;Name=rarA;gbkey=Gene;gene=rarA;gene_biotype=protein_coding;gene_synonym=mgsA;locus_tag=AD39_RS18825;old_locus_tag=AD39_0949 NZ_JJLH01000014.1 Protein Homology CDS 141199 142542 . + 0 ID=cds-WP_032283111.1;Parent=gene-AD39_RS18825;Dbxref=GenBank:WP_032283111.1;Name=WP_032283111.1;gbkey=CDS;gene=rarA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309004.1;locus_tag=AD39_RS18825;product=replication-associated recombination protein RarA;protein_id=WP_032283111.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 142633 143925 . + . ID=gene-AD39_RS18820;Name=serS;gbkey=Gene;gene=serS;gene_biotype=protein_coding;locus_tag=AD39_RS18820;old_locus_tag=AD39_0950 NZ_JJLH01000014.1 Protein Homology CDS 142633 143925 . + 0 ID=cds-WP_000886683.1;Parent=gene-AD39_RS18820;Dbxref=GenBank:WP_000886683.1;Name=WP_000886683.1;Ontology_term=GO:0006434,GO:0000166,GO:0004828,GO:0005524;gbkey=CDS;gene=serS;go_function=nucleotide binding|0000166||IEA,serine-tRNA ligase activity|0004828||IEA,ATP binding|0005524||IEA;go_process=seryl-tRNA aminoacylation|0006434||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000887397.1;locus_tag=AD39_RS18820;product=serine--tRNA ligase;protein_id=WP_000886683.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 144164 146608 . + . ID=gene-AD39_RS18815;Name=dmsA;gbkey=Gene;gene=dmsA;gene_biotype=protein_coding;locus_tag=AD39_RS18815;old_locus_tag=AD39_0951 NZ_JJLH01000014.1 Protein Homology CDS 144164 146608 . + 0 ID=cds-WP_032283112.1;Parent=gene-AD39_RS18815;Dbxref=GenBank:WP_032283112.1;Name=WP_032283112.1;Ontology_term=GO:0009389,GO:0030151;gbkey=CDS;gene=dmsA;go_function=dimethyl sulfoxide reductase activity|0009389||IEA,molybdenum ion binding|0030151||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415414.4;locus_tag=AD39_RS18815;product=dimethylsulfoxide reductase subunit A;protein_id=WP_032283112.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 146619 147236 . + . ID=gene-AD39_RS18810;Name=dmsB;gbkey=Gene;gene=dmsB;gene_biotype=protein_coding;locus_tag=AD39_RS18810;old_locus_tag=AD39_0952 NZ_JJLH01000014.1 Protein Homology CDS 146619 147236 . + 0 ID=cds-WP_000213098.1;Parent=gene-AD39_RS18810;Dbxref=GenBank:WP_000213098.1;Name=WP_000213098.1;gbkey=CDS;gene=dmsB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000213046.1;locus_tag=AD39_RS18810;product=dimethylsulfoxide reductase iron-sulfur subunit DmsB;protein_id=WP_000213098.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 147238 148101 . + . ID=gene-AD39_RS18805;Name=dmsC;gbkey=Gene;gene=dmsC;gene_biotype=protein_coding;locus_tag=AD39_RS18805;old_locus_tag=AD39_0953 NZ_JJLH01000014.1 Protein Homology CDS 147238 148101 . + 0 ID=cds-WP_000534648.1;Parent=gene-AD39_RS18805;Dbxref=GenBank:WP_000534648.1;Name=WP_000534648.1;gbkey=CDS;gene=dmsC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309008.1;locus_tag=AD39_RS18805;product=dimethyl sulfoxide reductase anchor subunit DmsC;protein_id=WP_000534648.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 148137 148763 . - . ID=gene-AD39_RS18800;Name=ycaC;gbkey=Gene;gene=ycaC;gene_biotype=protein_coding;locus_tag=AD39_RS18800;old_locus_tag=AD39_0954 NZ_JJLH01000014.1 Protein Homology CDS 148137 148763 . - 0 ID=cds-WP_000165876.1;Parent=gene-AD39_RS18800;Dbxref=GenBank:WP_000165876.1;Name=WP_000165876.1;Ontology_term=GO:0016787;gbkey=CDS;gene=ycaC;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309009.1;locus_tag=AD39_RS18800;product=isochorismate family cysteine hydrolase YcaC;protein_id=WP_000165876.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 149078 150226 . + . ID=gene-AD39_RS18795;Name=ycaD;gbkey=Gene;gene=ycaD;gene_biotype=protein_coding;locus_tag=AD39_RS18795;old_locus_tag=AD39_0956 NZ_JJLH01000014.1 Protein Homology CDS 149078 150226 . + 0 ID=cds-WP_000109295.1;Parent=gene-AD39_RS18795;Dbxref=GenBank:WP_000109295.1;Name=WP_000109295.1;gbkey=CDS;gene=ycaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309010.1;locus_tag=AD39_RS18795;product=MFS transporter;protein_id=WP_000109295.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 150436 151866 . + . ID=gene-AD39_RS18790;Name=ycaM;gbkey=Gene;gene=ycaM;gene_biotype=protein_coding;locus_tag=AD39_RS18790;old_locus_tag=AD39_0957 NZ_JJLH01000014.1 Protein Homology CDS 150436 151866 . + 0 ID=cds-WP_000918506.1;Parent=gene-AD39_RS18790;Dbxref=GenBank:WP_000918506.1;Name=WP_000918506.1;Ontology_term=GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;gene=ycaM;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415419.2;locus_tag=AD39_RS18790;product=APC family permease;protein_id=WP_000918506.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 151867 152775 . - . ID=gene-AD39_RS18785;Name=ycaN;gbkey=Gene;gene=ycaN;gene_biotype=protein_coding;locus_tag=AD39_RS18785;old_locus_tag=AD39_0958 NZ_JJLH01000014.1 Protein Homology CDS 151867 152775 . - 0 ID=cds-WP_032283113.1;Parent=gene-AD39_RS18785;Dbxref=GenBank:WP_032283113.1;Name=WP_032283113.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=ycaN;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415420.1;locus_tag=AD39_RS18785;product=LysR family transcriptional regulator;protein_id=WP_032283113.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 152875 153465 . + . ID=gene-AD39_RS18780;Name=ycaK;gbkey=Gene;gene=ycaK;gene_biotype=protein_coding;locus_tag=AD39_RS18780;old_locus_tag=AD39_0959 NZ_JJLH01000014.1 Protein Homology CDS 152875 153465 . + 0 ID=cds-WP_001190375.1;Parent=gene-AD39_RS18780;Dbxref=GenBank:WP_001190375.1;Name=WP_001190375.1;gbkey=CDS;gene=ycaK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415421.1;locus_tag=AD39_RS18780;product=NAD(P)H oxidoreductase;protein_id=WP_001190375.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 153547 154287 . - . ID=gene-AD39_RS18775;Name=pflA;gbkey=Gene;gene=pflA;gene_biotype=protein_coding;locus_tag=AD39_RS18775;old_locus_tag=AD39_0960 NZ_JJLH01000014.1 Protein Homology CDS 153547 154287 . - 0 ID=cds-WP_000111043.1;Parent=gene-AD39_RS18775;Dbxref=GenBank:WP_000111043.1;Name=WP_000111043.1;Ontology_term=GO:0043365,GO:0051539;gbkey=CDS;gene=pflA;go_function=[formate-C-acetyltransferase]-activating enzyme activity|0043365||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309012.1;locus_tag=AD39_RS18775;product=pyruvate formate lyase 1-activating protein;protein_id=WP_000111043.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 154479 156761 . - . ID=gene-AD39_RS18770;Name=pflB;gbkey=Gene;gene=pflB;gene_biotype=protein_coding;locus_tag=AD39_RS18770;old_locus_tag=AD39_0961 NZ_JJLH01000014.1 Protein Homology CDS 154479 156761 . - 0 ID=cds-WP_001292812.1;Parent=gene-AD39_RS18770;Dbxref=GenBank:WP_001292812.1;Name=WP_001292812.1;Ontology_term=GO:0005975,GO:0008861,GO:0005737;gbkey=CDS;gene=pflB;go_component=cytoplasm|0005737||IEA;go_function=formate C-acetyltransferase activity|0008861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706821.1;locus_tag=AD39_RS18770;product=formate C-acetyltransferase;protein_id=WP_001292812.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 156816 157673 . - . ID=gene-AD39_RS28905;Name=focA;gbkey=Gene;gene=focA;gene_biotype=protein_coding;locus_tag=AD39_RS28905;old_locus_tag=AD39_0962 NZ_JJLH01000014.1 Protein Homology CDS 156816 157673 . - 0 ID=cds-WP_000642546.1;Parent=gene-AD39_RS28905;Dbxref=GenBank:WP_000642546.1;Name=WP_000642546.1;gbkey=CDS;gene=focA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309014.1;locus_tag=AD39_RS28905;product=formate transporter FocA;protein_id=WP_000642546.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 158079 159839 . - . ID=gene-AD39_RS18760;Name=ycaO;gbkey=Gene;gene=ycaO;gene_biotype=protein_coding;locus_tag=AD39_RS18760;old_locus_tag=AD39_0963 NZ_JJLH01000014.1 Protein Homology CDS 158079 159839 . - 0 ID=cds-WP_032283114.1;Parent=gene-AD39_RS18760;Dbxref=GenBank:WP_032283114.1;Name=WP_032283114.1;gbkey=CDS;gene=ycaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415425.4;locus_tag=AD39_RS18760;product=30S ribosomal protein S12 methylthiotransferase accessory factor YcaO;protein_id=WP_032283114.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 159969 160661 . + . ID=gene-AD39_RS0123555;Name=ycaP;gbkey=Gene;gene=ycaP;gene_biotype=protein_coding;locus_tag=AD39_RS0123555 NZ_JJLH01000014.1 Protein Homology CDS 159969 160661 . + 0 ID=cds-WP_000642849.1;Parent=gene-AD39_RS0123555;Dbxref=GenBank:WP_000642849.1;Name=WP_000642849.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ycaP;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415426.1;locus_tag=AD39_RS0123555;product=DUF421 domain-containing protein;protein_id=WP_000642849.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 160860 161948 . + . ID=gene-AD39_RS18755;Name=serC;gbkey=Gene;gene=serC;gene_biotype=protein_coding;locus_tag=AD39_RS18755;old_locus_tag=AD39_0965 NZ_JJLH01000014.1 Protein Homology CDS 160860 161948 . + 0 ID=cds-WP_000057149.1;Parent=gene-AD39_RS18755;Dbxref=GenBank:WP_000057149.1;Name=WP_000057149.1;Ontology_term=GO:0006564,GO:0003824,GO:0004648;gbkey=CDS;gene=serC;go_function=catalytic activity|0003824||IEA,O-phospho-L-serine:2-oxoglutarate aminotransferase activity|0004648||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706825.1;locus_tag=AD39_RS18755;product=3-phosphoserine/phosphohydroxythreonine transaminase;protein_id=WP_000057149.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 162019 163302 . + . ID=gene-AD39_RS18750;Name=aroA;gbkey=Gene;gene=aroA;gene_biotype=protein_coding;locus_tag=AD39_RS18750;old_locus_tag=AD39_0966 NZ_JJLH01000014.1 Protein Homology CDS 162019 163302 . + 0 ID=cds-WP_000445231.1;Parent=gene-AD39_RS18750;Dbxref=GenBank:WP_000445231.1;Name=WP_000445231.1;Ontology_term=GO:0009073,GO:0003866;gbkey=CDS;gene=aroA;go_function=3-phosphoshikimate 1-carboxyvinyltransferase activity|0003866||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309018.1;locus_tag=AD39_RS18750;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=WP_000445231.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 163471 164235 . + . ID=gene-AD39_RS18745;Name=ycaL;gbkey=Gene;gene=ycaL;gene_biotype=protein_coding;locus_tag=AD39_RS18745;old_locus_tag=AD39_0967 NZ_JJLH01000014.1 Protein Homology CDS 163471 164235 . + 0 ID=cds-WP_001295345.1;Parent=gene-AD39_RS18745;Dbxref=GenBank:WP_001295345.1;Name=WP_001295345.1;gbkey=CDS;gene=ycaL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706828.2;locus_tag=AD39_RS18745;product=metallopeptidase YcaL;protein_id=WP_001295345.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 164408 165091 . + . ID=gene-AD39_RS18740;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;locus_tag=AD39_RS18740;old_locus_tag=AD39_0968 NZ_JJLH01000014.1 Protein Homology CDS 164408 165091 . + 0 ID=cds-WP_000125016.1;Parent=gene-AD39_RS18740;Dbxref=GenBank:WP_000125016.1;Name=WP_000125016.1;Ontology_term=GO:0015949,GO:0004127,GO:0005524;gbkey=CDS;gene=cmk;go_function=(d)CMP kinase activity|0004127||IEA,ATP binding|0005524||IEA;go_process=nucleobase-containing small molecule interconversion|0015949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000125007.1;locus_tag=AD39_RS18740;product=(d)CMP kinase;protein_id=WP_000125016.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 165202 166875 . + . ID=gene-AD39_RS18735;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=AD39_RS18735;old_locus_tag=AD39_0969 NZ_JJLH01000014.1 Protein Homology CDS 165202 166875 . + 0 ID=cds-WP_000140327.1;Parent=gene-AD39_RS18735;Dbxref=GenBank:WP_000140327.1;Name=WP_000140327.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsA;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123560.1;locus_tag=AD39_RS18735;product=30S ribosomal protein S1;protein_id=WP_000140327.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 167035 167319 . + . ID=gene-AD39_RS18730;Name=ihfB;gbkey=Gene;gene=ihfB;gene_biotype=protein_coding;locus_tag=AD39_RS18730;old_locus_tag=AD39_0970 NZ_JJLH01000014.1 Protein Homology CDS 167035 167319 . + 0 ID=cds-WP_000167336.1;Parent=gene-AD39_RS18730;Dbxref=GenBank:WP_000167336.1;Name=WP_000167336.1;Ontology_term=GO:0006310,GO:0006355,GO:0006417,GO:0075713,GO:0003677,GO:0005694;gbkey=CDS;gene=ihfB;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA,regulation of translation|0006417||IEA,establishment of integrated proviral latency|0075713||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006819309.1;locus_tag=AD39_RS18730;product=integration host factor subunit beta;protein_id=WP_000167336.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 167526 169790 . + . ID=gene-AD39_RS18725;Name=ycaI;gbkey=Gene;gene=ycaI;gene_biotype=protein_coding;locus_tag=AD39_RS18725;old_locus_tag=AD39_0971 NZ_JJLH01000014.1 Protein Homology CDS 167526 169790 . + 0 ID=cds-WP_032287510.1;Parent=gene-AD39_RS18725;Dbxref=GenBank:WP_032287510.1;Name=WP_032287510.1;Ontology_term=GO:0030420,GO:0016020;gbkey=CDS;gene=ycaI;go_component=membrane|0016020||IEA;go_process=establishment of competence for transformation|0030420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309023.2;locus_tag=AD39_RS18725;product=ComEC family protein;protein_id=WP_032287510.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 169827 171575 . + . ID=gene-AD39_RS18720;Name=msbA;gbkey=Gene;gene=msbA;gene_biotype=protein_coding;locus_tag=AD39_RS18720;old_locus_tag=AD39_0972 NZ_JJLH01000014.1 Protein Homology CDS 169827 171575 . + 0 ID=cds-WP_000551270.1;Parent=gene-AD39_RS18720;Dbxref=GenBank:WP_000551270.1;Name=WP_000551270.1;Ontology_term=GO:0055085,GO:0005524,GO:0034040,GO:0140359,GO:0016020;gbkey=CDS;gene=msbA;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled lipid transmembrane transporter activity|0034040||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309024.1;locus_tag=AD39_RS18720;product=lipid A ABC transporter ATP-binding protein/permease MsbA;protein_id=WP_000551270.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 171572 172558 . + . ID=gene-AD39_RS18715;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=AD39_RS18715;old_locus_tag=AD39_0973 NZ_JJLH01000014.1 Protein Homology CDS 171572 172558 . + 0 ID=cds-WP_032283116.1;Parent=gene-AD39_RS18715;Dbxref=GenBank:WP_032283116.1;Name=WP_032283116.1;Ontology_term=GO:0009245,GO:0009029;gbkey=CDS;gene=lpxK;go_function=tetraacyldisaccharide 4'-kinase activity|0009029||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309025.1;locus_tag=AD39_RS18715;product=tetraacyldisaccharide 4'-kinase;protein_id=WP_032283116.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 172595 173827 . + . ID=gene-AD39_RS18710;Name=ycaQ;gbkey=Gene;gene=ycaQ;gene_biotype=protein_coding;locus_tag=AD39_RS18710;old_locus_tag=AD39_0974 NZ_JJLH01000014.1 Protein Homology CDS 172595 173827 . + 0 ID=cds-WP_032283118.1;Parent=gene-AD39_RS18710;Dbxref=GenBank:WP_032283118.1;Name=WP_032283118.1;gbkey=CDS;gene=ycaQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415436.1;locus_tag=AD39_RS18710;product=crosslink repair DNA glycosylase YcaQ;protein_id=WP_032283118.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 173879 174061 . + . ID=gene-AD39_RS18705;Name=ycaR;gbkey=Gene;gene=ycaR;gene_biotype=protein_coding;locus_tag=AD39_RS18705;old_locus_tag=AD39_0975 NZ_JJLH01000014.1 Protein Homology CDS 173879 174061 . + 0 ID=cds-WP_000350058.1;Parent=gene-AD39_RS18705;Dbxref=GenBank:WP_000350058.1;Name=WP_000350058.1;gbkey=CDS;gene=ycaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309027.1;locus_tag=AD39_RS18705;product=protein YcaR;protein_id=WP_000350058.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 174058 174804 . + . ID=gene-AD39_RS18700;Name=kdsB;gbkey=Gene;gene=kdsB;gene_biotype=protein_coding;locus_tag=AD39_RS18700;old_locus_tag=AD39_0976 NZ_JJLH01000014.1 Protein Homology CDS 174058 174804 . + 0 ID=cds-WP_000011592.1;Parent=gene-AD39_RS18700;Dbxref=GenBank:WP_000011592.1;Name=WP_000011592.1;Ontology_term=GO:0009244,GO:0008690;gbkey=CDS;gene=kdsB;go_function=3-deoxy-manno-octulosonate cytidylyltransferase activity|0008690||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309028.1;locus_tag=AD39_RS18700;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=WP_000011592.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 174958 175851 . + . ID=gene-AD39_RS18695;Name=ycbJ;gbkey=Gene;gene=ycbJ;gene_biotype=protein_coding;locus_tag=AD39_RS18695;old_locus_tag=AD39_0977 NZ_JJLH01000014.1 Protein Homology CDS 174958 175851 . + 0 ID=cds-WP_032283119.1;Parent=gene-AD39_RS18695;Dbxref=GenBank:WP_032283119.1;Name=WP_032283119.1;gbkey=CDS;gene=ycbJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309029.1;locus_tag=AD39_RS18695;product=YcbJ family phosphotransferase;protein_id=WP_032283119.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 175828 176607 . - . ID=gene-AD39_RS18690;Name=elyC;gbkey=Gene;gene=elyC;gene_biotype=protein_coding;locus_tag=AD39_RS18690;old_locus_tag=AD39_0978 NZ_JJLH01000014.1 Protein Homology CDS 175828 176607 . - 0 ID=cds-WP_000899586.1;Parent=gene-AD39_RS18690;Dbxref=GenBank:WP_000899586.1;Name=WP_000899586.1;gbkey=CDS;gene=elyC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706838.2;locus_tag=AD39_RS18690;product=envelope biogenesis factor ElyC;protein_id=WP_000899586.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 176743 177528 . + . ID=gene-AD39_RS18685;Name=cmoM;gbkey=Gene;gene=cmoM;gene_biotype=protein_coding;locus_tag=AD39_RS18685;old_locus_tag=AD39_0979 NZ_JJLH01000014.1 Protein Homology CDS 176743 177528 . + 0 ID=cds-WP_001298300.1;Parent=gene-AD39_RS18685;Dbxref=GenBank:WP_001298300.1;Name=WP_001298300.1;gbkey=CDS;gene=cmoM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415441.1;locus_tag=AD39_RS18685;product=tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM;protein_id=WP_001298300.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 177525 178847 . + . ID=gene-AD39_RS18680;Name=mukF;gbkey=Gene;gene=mukF;gene_biotype=protein_coding;locus_tag=AD39_RS18680;old_locus_tag=AD39_0980 NZ_JJLH01000014.1 Protein Homology CDS 177525 178847 . + 0 ID=cds-WP_032260282.1;Parent=gene-AD39_RS18680;Dbxref=GenBank:WP_032260282.1;Name=WP_032260282.1;Ontology_term=GO:0007059,GO:0005509;gbkey=CDS;gene=mukF;go_function=calcium ion binding|0005509||IEA;go_process=chromosome segregation|0007059||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123549.1;locus_tag=AD39_RS18680;product=chromosome partition protein MukF;protein_id=WP_032260282.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 178828 179532 . + . ID=gene-AD39_RS18675;Name=mukE;gbkey=Gene;gene=mukE;gene_biotype=protein_coding;locus_tag=AD39_RS18675;old_locus_tag=AD39_0981 NZ_JJLH01000014.1 Protein Homology CDS 178828 179532 . + 0 ID=cds-WP_001295347.1;Parent=gene-AD39_RS18675;Dbxref=GenBank:WP_001295347.1;Name=WP_001295347.1;Ontology_term=GO:0007059,GO:0030261;gbkey=CDS;gene=mukE;go_process=chromosome segregation|0007059||IEA,chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415443.2;locus_tag=AD39_RS18675;product=chromosome partition protein MukE;protein_id=WP_001295347.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 179532 183992 . + . ID=gene-AD39_RS18670;Name=mukB;gbkey=Gene;gene=mukB;gene_biotype=protein_coding;locus_tag=AD39_RS18670;old_locus_tag=AD39_0982 NZ_JJLH01000014.1 Protein Homology CDS 179532 183992 . + 0 ID=cds-WP_032283121.1;Parent=gene-AD39_RS18670;Dbxref=GenBank:WP_032283121.1;Name=WP_032283121.1;Ontology_term=GO:0007059,GO:0030261,GO:0003677;gbkey=CDS;gene=mukB;go_function=DNA binding|0003677||IEA;go_process=chromosome segregation|0007059||IEA,chromosome condensation|0030261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309034.1;locus_tag=AD39_RS18670;product=chromosome partition protein MukB;protein_id=WP_032283121.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 184253 186100 . + . ID=gene-AD39_RS18665;Name=ldtD;gbkey=Gene;gene=ldtD;gene_biotype=protein_coding;locus_tag=AD39_RS18665;old_locus_tag=AD39_0983 NZ_JJLH01000014.1 Protein Homology CDS 184253 186100 . + 0 ID=cds-WP_001460720.1;Parent=gene-AD39_RS18665;Dbxref=GenBank:WP_001460720.1;Name=WP_001460720.1;Ontology_term=GO:0016740;gbkey=CDS;gene=ldtD;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415445.1;locus_tag=AD39_RS18665;product=L%2CD-transpeptidase;protein_id=WP_001460720.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 186281 186829 . + . ID=gene-AD39_RS18660;Name=mepK;gbkey=Gene;gene=mepK;gene_biotype=protein_coding;locus_tag=AD39_RS18660;old_locus_tag=AD39_0984 NZ_JJLH01000014.1 Protein Homology CDS 186281 186829 . + 0 ID=cds-WP_001295932.1;Parent=gene-AD39_RS18660;Dbxref=GenBank:WP_001295932.1;Name=WP_001295932.1;gbkey=CDS;gene=mepK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309036.1;locus_tag=AD39_RS18660;product=YcbK family protein;protein_id=WP_001295932.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 186856 187503 . + . ID=gene-AD39_RS18655;Name=gloC;gbkey=Gene;gene=gloC;gene_biotype=protein_coding;locus_tag=AD39_RS18655;old_locus_tag=AD39_0985 NZ_JJLH01000014.1 Protein Homology CDS 186856 187503 . + 0 ID=cds-WP_001109487.1;Parent=gene-AD39_RS18655;Dbxref=GenBank:WP_001109487.1;Name=WP_001109487.1;gbkey=CDS;gene=gloC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003035823.1;locus_tag=AD39_RS18655;product=hydroxyacylglutathione hydrolase GloC;protein_id=WP_001109487.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 187725 188915 . - . ID=gene-AD39_RS18650;Name=aspC;gbkey=Gene;gene=aspC;gene_biotype=protein_coding;locus_tag=AD39_RS18650;old_locus_tag=AD39_0986 NZ_JJLH01000014.1 Protein Homology CDS 187725 188915 . - 0 ID=cds-WP_000462687.1;Parent=gene-AD39_RS18650;Dbxref=GenBank:WP_000462687.1;Name=WP_000462687.1;gbkey=CDS;gene=aspC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009653304.1;locus_tag=AD39_RS18650;product=aspartate transaminase;protein_id=WP_000462687.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 189100 190188 . - . ID=gene-AD39_RS18645;Name=ompF;gbkey=Gene;gene=ompF;gene_biotype=protein_coding;locus_tag=AD39_RS18645;old_locus_tag=AD39_0987 NZ_JJLH01000014.1 Protein Homology CDS 189100 190188 . - 0 ID=cds-WP_000977920.1;Parent=gene-AD39_RS18645;Dbxref=GenBank:WP_000977920.1;Name=WP_000977920.1;gbkey=CDS;gene=ompF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415449.1;locus_tag=AD39_RS18645;product=porin OmpF;protein_id=WP_000977920.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 190790 192190 . - . ID=gene-AD39_RS18640;Name=asnS;gbkey=Gene;gene=asnS;gene_biotype=protein_coding;locus_tag=AD39_RS18640;old_locus_tag=AD39_0988 NZ_JJLH01000014.1 Protein Homology CDS 190790 192190 . - 0 ID=cds-WP_001382134.1;Parent=gene-AD39_RS18640;Dbxref=GenBank:WP_001382134.1;Name=WP_001382134.1;Ontology_term=GO:0006421,GO:0004816,GO:0005524;gbkey=CDS;gene=asnS;go_function=asparagine-tRNA ligase activity|0004816||IEA,ATP binding|0005524||IEA;go_process=asparaginyl-tRNA aminoacylation|0006421||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123540.1;locus_tag=AD39_RS18640;product=asparagine--tRNA ligase;protein_id=WP_001382134.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 192359 193561 . - . ID=gene-AD39_RS18635;Name=pncB;gbkey=Gene;gene=pncB;gene_biotype=protein_coding;locus_tag=AD39_RS18635;old_locus_tag=AD39_0989 NZ_JJLH01000014.1 Protein Homology CDS 192359 193561 . - 0 ID=cds-WP_001297200.1;Parent=gene-AD39_RS18635;Dbxref=GenBank:WP_001297200.1;Name=WP_001297200.1;Ontology_term=GO:0009435,GO:0004516;gbkey=CDS;gene=pncB;go_function=nicotinate phosphoribosyltransferase activity|0004516||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706850.2;locus_tag=AD39_RS18635;product=nicotinate phosphoribosyltransferase;protein_id=WP_001297200.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 193827 196439 . + . ID=gene-AD39_RS18630;Name=pepN;gbkey=Gene;gene=pepN;gene_biotype=protein_coding;locus_tag=AD39_RS18630;old_locus_tag=AD39_0991 NZ_JJLH01000014.1 Protein Homology CDS 193827 196439 . + 0 ID=cds-WP_000193844.1;Parent=gene-AD39_RS18630;Dbxref=GenBank:WP_000193844.1;Name=WP_000193844.1;Ontology_term=GO:0006508,GO:0004177,GO:0008237,GO:0008270;gbkey=CDS;gene=pepN;go_function=aminopeptidase activity|0004177||IEA,metallopeptidase activity|0008237||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000193787.1;locus_tag=AD39_RS18630;product=aminopeptidase N;protein_id=WP_000193844.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 196482 197249 . - . ID=gene-AD39_RS18625;Name=ssuB;gbkey=Gene;gene=ssuB;gene_biotype=protein_coding;locus_tag=AD39_RS18625;old_locus_tag=AD39_0992 NZ_JJLH01000014.1 Protein Homology CDS 196482 197249 . - 0 ID=cds-WP_032283123.1;Parent=gene-AD39_RS18625;Dbxref=GenBank:WP_032283123.1;Name=WP_032283123.1;Ontology_term=GO:0005524;gbkey=CDS;gene=ssuB;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309043.1;locus_tag=AD39_RS18625;product=aliphatic sulfonates ABC transporter ATP-binding protein;protein_id=WP_032283123.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 197246 198037 . - . ID=gene-AD39_RS18620;Name=ssuC;gbkey=Gene;gene=ssuC;gene_biotype=protein_coding;locus_tag=AD39_RS18620;old_locus_tag=AD39_0993 NZ_JJLH01000014.1 Protein Homology CDS 197246 198037 . - 0 ID=cds-WP_032283124.1;Parent=gene-AD39_RS18620;Dbxref=GenBank:WP_032283124.1;Name=WP_032283124.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=ssuC;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415454.4;locus_tag=AD39_RS18620;product=aliphatic sulfonate ABC transporter permease SsuC;protein_id=WP_032283124.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 198048 199193 . - . ID=gene-AD39_RS18615;Name=ssuD;gbkey=Gene;gene=ssuD;gene_biotype=protein_coding;locus_tag=AD39_RS18615;old_locus_tag=AD39_0994 NZ_JJLH01000014.1 Protein Homology CDS 198048 199193 . - 0 ID=cds-WP_032283125.1;Parent=gene-AD39_RS18615;Dbxref=GenBank:WP_032283125.1;Name=WP_032283125.1;Ontology_term=GO:0006790,GO:0008726,GO:0010181;gbkey=CDS;gene=ssuD;go_function=alkanesulfonate monooxygenase activity|0008726||IEA,FMN binding|0010181||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309045.1;locus_tag=AD39_RS18615;product=FMNH2-dependent alkanesulfonate monooxygenase;protein_id=WP_032283125.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 199190 200149 . - . ID=gene-AD39_RS18610;Name=ssuA;gbkey=Gene;gene=ssuA;gene_biotype=protein_coding;locus_tag=AD39_RS18610;old_locus_tag=AD39_0995 NZ_JJLH01000014.1 Protein Homology CDS 199190 200149 . - 0 ID=cds-WP_032283127.1;Parent=gene-AD39_RS18610;Dbxref=GenBank:WP_032283127.1;Name=WP_032283127.1;gbkey=CDS;gene=ssuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415456.4;locus_tag=AD39_RS18610;product=aliphatic sulfonate ABC transporter substrate-binding protein SsuA;protein_id=WP_032283127.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 200142 200717 . - . ID=gene-AD39_RS18605;Name=ssuE;gbkey=Gene;gene=ssuE;gene_biotype=protein_coding;locus_tag=AD39_RS18605;old_locus_tag=AD39_0996 NZ_JJLH01000014.1 Protein Homology CDS 200142 200717 . - 0 ID=cds-WP_032283128.1;Parent=gene-AD39_RS18605;Dbxref=GenBank:WP_032283128.1;Name=WP_032283128.1;Ontology_term=GO:0046306,GO:0008752;gbkey=CDS;gene=ssuE;go_function=FMN reductase [NAD(P)H] activity|0008752||IEA;go_process=alkanesulfonate catabolic process|0046306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415457.1;locus_tag=AD39_RS18605;product=NADPH-dependent FMN reductase;protein_id=WP_032283128.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 201073 201615 . + . ID=gene-AD39_RS18600;Name=AD39_RS18600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18600;old_locus_tag=AD39_0997 NZ_JJLH01000014.1 Protein Homology CDS 201073 201615 . + 0 ID=cds-WP_000750284.1;Parent=gene-AD39_RS18600;Dbxref=GenBank:WP_000750284.1;Name=WP_000750284.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415458.2;locus_tag=AD39_RS18600;product=fimbrial protein;protein_id=WP_000750284.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 201698 202399 . + . ID=gene-AD39_RS18595;Name=elfD;gbkey=Gene;gene=elfD;gene_biotype=protein_coding;locus_tag=AD39_RS18595;old_locus_tag=AD39_0998 NZ_JJLH01000014.1 Protein Homology CDS 201698 202399 . + 0 ID=cds-WP_000845152.1;Parent=gene-AD39_RS18595;Dbxref=GenBank:WP_000845152.1;Name=WP_000845152.1;Ontology_term=GO:0043711,GO:0061077,GO:0030288;gbkey=CDS;gene=elfD;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=pilus organization|0043711||IEA,chaperone-mediated protein folding|0061077||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415459.1;locus_tag=AD39_RS18595;product=fimbrial biogenesis chaperone;protein_id=WP_000845152.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 202424 205024 . + . ID=gene-AD39_RS18590;Name=elfC;gbkey=Gene;gene=elfC;gene_biotype=protein_coding;locus_tag=AD39_RS18590;old_locus_tag=AD39_0999 NZ_JJLH01000014.1 Protein Homology CDS 202424 205024 . + 0 ID=cds-WP_000286318.1;Parent=gene-AD39_RS18590;Dbxref=GenBank:WP_000286318.1;Name=WP_000286318.1;Ontology_term=GO:0009297,GO:0005515,GO:0015473,GO:0016020;gbkey=CDS;gene=elfC;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA,fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706863.2;locus_tag=AD39_RS18590;product=fimbrial biogenesis usher protein;protein_id=WP_000286318.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 205015 206085 . + . ID=gene-AD39_RS18585;Name=elfG;gbkey=Gene;gene=elfG;gene_biotype=protein_coding;locus_tag=AD39_RS18585;old_locus_tag=AD39_1000 NZ_JJLH01000014.1 Protein Homology CDS 205015 206085 . + 0 ID=cds-WP_001165655.1;Parent=gene-AD39_RS18585;Dbxref=GenBank:WP_001165655.1;Name=WP_001165655.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=elfG;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415461.1;locus_tag=AD39_RS18585;product=fimbrial protein;protein_id=WP_001165655.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 206097 206639 . + . ID=gene-AD39_RS18580;Name=ycbU;gbkey=Gene;gene=ycbU;gene_biotype=protein_coding;locus_tag=AD39_RS18580;old_locus_tag=AD39_1001 NZ_JJLH01000014.1 Protein Homology CDS 206097 206639 . + 0 ID=cds-WP_000730614.1;Parent=gene-AD39_RS18580;Dbxref=GenBank:WP_000730614.1;Name=WP_000730614.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=ycbU;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415462.1;locus_tag=AD39_RS18580;product=fimbrial protein;protein_id=WP_000730614.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 206647 207162 . + . ID=gene-AD39_RS0123565;Name=ycbV;gbkey=Gene;gene=ycbV;gene_biotype=protein_coding;locus_tag=AD39_RS0123565;old_locus_tag=AD39_1002 NZ_JJLH01000014.1 Protein Homology CDS 206647 207162 . + 0 ID=cds-WP_000919489.1;Parent=gene-AD39_RS0123565;Dbxref=GenBank:WP_000919489.1;Name=WP_000919489.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=ycbV;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415463.2;locus_tag=AD39_RS0123565;product=fimbrial protein;protein_id=WP_000919489.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 207128 207865 . + . ID=gene-AD39_RS18575;Name=ycbF;gbkey=Gene;gene=ycbF;gene_biotype=protein_coding;locus_tag=AD39_RS18575;old_locus_tag=AD39_1003 NZ_JJLH01000014.1 Protein Homology CDS 207128 207865 . + 0 ID=cds-WP_001111470.1;Parent=gene-AD39_RS18575;Dbxref=GenBank:WP_001111470.1;Name=WP_001111470.1;gbkey=CDS;gene=ycbF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706867.1;locus_tag=AD39_RS18575;product=fimbrial chaperone;protein_id=WP_001111470.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 207976 208986 . + . ID=gene-AD39_RS18570;Name=pyrD;gbkey=Gene;gene=pyrD;gene_biotype=protein_coding;locus_tag=AD39_RS18570;old_locus_tag=AD39_1004 NZ_JJLH01000014.1 Protein Homology CDS 207976 208986 . + 0 ID=cds-WP_001295352.1;Parent=gene-AD39_RS18570;Dbxref=GenBank:WP_001295352.1;Name=WP_001295352.1;Ontology_term=GO:0006222,GO:0004152,GO:0016020;gbkey=CDS;gene=pyrD;go_component=membrane|0016020||IEA;go_function=dihydroorotate dehydrogenase activity|0004152||IEA;go_process=UMP biosynthetic process|0006222||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309056.1;locus_tag=AD39_RS18570;product=quinone-dependent dihydroorotate dehydrogenase;protein_id=WP_001295352.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 209160 209702 . + . ID=gene-AD39_RS18565;Name=zapC;gbkey=Gene;gene=zapC;gene_biotype=protein_coding;locus_tag=AD39_RS18565;old_locus_tag=AD39_1005 NZ_JJLH01000014.1 Protein Homology CDS 209160 209702 . + 0 ID=cds-WP_001295353.1;Parent=gene-AD39_RS18565;Dbxref=GenBank:WP_001295353.1;Name=WP_001295353.1;gbkey=CDS;gene=zapC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415466.4;locus_tag=AD39_RS18565;product=cell division protein ZapC;protein_id=WP_001295353.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 209699 210808 . - . ID=gene-AD39_RS18560;Name=ycbX;gbkey=Gene;gene=ycbX;gene_biotype=protein_coding;locus_tag=AD39_RS18560;old_locus_tag=AD39_1006 NZ_JJLH01000014.1 Protein Homology CDS 209699 210808 . - 0 ID=cds-WP_024166680.1;Parent=gene-AD39_RS18560;Dbxref=GenBank:WP_024166680.1;Name=WP_024166680.1;gbkey=CDS;gene=ycbX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706870.1;locus_tag=AD39_RS18560;product=6-N-hydroxylaminopurine resistance protein YcbX;protein_id=WP_024166680.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 211052 213160 . + . ID=gene-AD39_RS18555;Name=rlmKL;gbkey=Gene;gene=rlmKL;gene_biotype=protein_coding;locus_tag=AD39_RS18555;old_locus_tag=AD39_1007 NZ_JJLH01000014.1 Protein Homology CDS 211052 213160 . + 0 ID=cds-WP_021578479.1;Parent=gene-AD39_RS18555;Dbxref=GenBank:WP_021578479.1;Name=WP_021578479.1;Ontology_term=GO:0031167,GO:0003723,GO:0008990;gbkey=CDS;gene=rlmKL;go_function=RNA binding|0003723||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309059.1;locus_tag=AD39_RS18555;product=bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL;protein_id=WP_021578479.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 213172 215079 . + . ID=gene-AD39_RS18550;Name=uup;gbkey=Gene;gene=uup;gene_biotype=protein_coding;locus_tag=AD39_RS18550;old_locus_tag=AD39_1008 NZ_JJLH01000014.1 Protein Homology CDS 213172 215079 . + 0 ID=cds-WP_000053089.1;Parent=gene-AD39_RS18550;Dbxref=GenBank:WP_000053089.1;Name=WP_000053089.1;Ontology_term=GO:0005524;gbkey=CDS;gene=uup;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415469.1;locus_tag=AD39_RS18550;product=ABC transporter ATP-binding protein;protein_id=WP_000053089.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 215209 216462 . + . ID=gene-AD39_RS18545;Name=pqiA;gbkey=Gene;gene=pqiA;gene_biotype=protein_coding;locus_tag=AD39_RS18545;old_locus_tag=AD39_1009 NZ_JJLH01000014.1 Protein Homology CDS 215209 216462 . + 0 ID=cds-WP_001372779.1;Parent=gene-AD39_RS18545;Dbxref=GenBank:WP_001372779.1;Name=WP_001372779.1;gbkey=CDS;gene=pqiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415470.1;locus_tag=AD39_RS18545;product=membrane integrity-associated transporter subunit PqiA;protein_id=WP_001372779.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 216467 218107 . + . ID=gene-AD39_RS18540;Name=pqiB;gbkey=Gene;gene=pqiB;gene_biotype=protein_coding;locus_tag=AD39_RS18540;old_locus_tag=AD39_1010 NZ_JJLH01000014.1 Protein Homology CDS 216467 218107 . + 0 ID=cds-WP_000445533.1;Parent=gene-AD39_RS18540;Dbxref=GenBank:WP_000445533.1;Name=WP_000445533.1;gbkey=CDS;gene=pqiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415471.1;locus_tag=AD39_RS18540;product=intermembrane transport protein PqiB;protein_id=WP_000445533.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 218104 218667 . + . ID=gene-AD39_RS18535;Name=pqiC;gbkey=Gene;gene=pqiC;gene_biotype=protein_coding;locus_tag=AD39_RS18535;old_locus_tag=AD39_1011 NZ_JJLH01000014.1 Protein Homology CDS 218104 218667 . + 0 ID=cds-WP_000759120.1;Parent=gene-AD39_RS18535;Dbxref=GenBank:WP_000759120.1;Name=WP_000759120.1;gbkey=CDS;gene=pqiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706875.1;locus_tag=AD39_RS18535;product=membrane integrity-associated transporter subunit PqiC;protein_id=WP_000759120.1;transl_table=11 NZ_JJLH01000014.1 RefSeq pseudogene 218923 219087 . + . ID=gene-AD39_RS0123570;Name=rmf;end_range=219087,.;gbkey=Gene;gene=rmf;gene_biotype=pseudogene;locus_tag=AD39_RS0123570;partial=true;pseudo=true NZ_JJLH01000014.1 Protein Homology CDS 218923 219087 . + 0 ID=cds-AD39_RS0123570;Parent=gene-AD39_RS0123570;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0141014,GO:0043022;end_range=219087,.;gbkey=CDS;gene=rmf;go_function=ribosome binding|0043022||IEA;go_process=ribosome hibernation|0141014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309064.1;locus_tag=AD39_RS0123570;partial=true;product=ribosome modulation factor;pseudo=true;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 219160 219678 . - . ID=gene-AD39_RS18530;Name=fabA;gbkey=Gene;gene=fabA;gene_biotype=protein_coding;locus_tag=AD39_RS18530;old_locus_tag=AD39_1012 NZ_JJLH01000014.1 Protein Homology CDS 219160 219678 . - 0 ID=cds-WP_000227927.1;Parent=gene-AD39_RS18530;Dbxref=GenBank:WP_000227927.1;Name=WP_000227927.1;Ontology_term=GO:0006633,GO:0019171;gbkey=CDS;gene=fabA;go_function=(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity|0019171||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014915875.1;locus_tag=AD39_RS18530;product=bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase;protein_id=WP_000227927.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 219747 221507 . - . ID=gene-AD39_RS18525;Name=ycbZ;gbkey=Gene;gene=ycbZ;gene_biotype=protein_coding;locus_tag=AD39_RS18525;old_locus_tag=AD39_1013 NZ_JJLH01000014.1 Protein Homology CDS 219747 221507 . - 0 ID=cds-WP_000156526.1;Parent=gene-AD39_RS18525;Dbxref=GenBank:WP_000156526.1;Name=WP_000156526.1;gbkey=CDS;gene=ycbZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309066.1;locus_tag=AD39_RS18525;product=AAA family ATPase;protein_id=WP_000156526.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 221693 222145 . + . ID=gene-AD39_RS18520;Name=matP;gbkey=Gene;gene=matP;gene_biotype=protein_coding;locus_tag=AD39_RS18520;old_locus_tag=AD39_1014 NZ_JJLH01000014.1 Protein Homology CDS 221693 222145 . + 0 ID=cds-WP_000877158.1;Parent=gene-AD39_RS18520;Dbxref=GenBank:WP_000877158.1;Name=WP_000877158.1;Ontology_term=GO:0006355,GO:0043565;gbkey=CDS;gene=matP;go_function=sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309067.1;locus_tag=AD39_RS18520;product=macrodomain Ter protein MatP;protein_id=WP_000877158.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 222220 223272 . - . ID=gene-AD39_RS18515;Name=ompA;gbkey=Gene;gene=ompA;gene_biotype=protein_coding;locus_tag=AD39_RS18515;old_locus_tag=AD39_1015 NZ_JJLH01000014.1 Protein Homology CDS 222220 223272 . - 0 ID=cds-WP_000750419.1;Parent=gene-AD39_RS18515;Dbxref=GenBank:WP_000750419.1;Name=WP_000750419.1;gbkey=CDS;gene=ompA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706879.2;locus_tag=AD39_RS18515;product=porin OmpA;protein_id=WP_000750419.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 223629 224138 . - . ID=gene-AD39_RS18505;Name=sulA;gbkey=Gene;gene=sulA;gene_biotype=protein_coding;locus_tag=AD39_RS18505;old_locus_tag=AD39_1017 NZ_JJLH01000014.1 Protein Homology CDS 223629 224138 . - 0 ID=cds-WP_000288710.1;Parent=gene-AD39_RS18505;Dbxref=GenBank:WP_000288710.1;Name=WP_000288710.1;Ontology_term=GO:0009432,GO:0051782,GO:0005515;gbkey=CDS;gene=sulA;go_function=protein binding|0005515||IEA;go_process=SOS response|0009432||IEA,negative regulation of cell division|0051782||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309069.1;locus_tag=AD39_RS18505;product=SOS-induced cell division inhibitor SulA;protein_id=WP_000288710.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 224357 224986 . + . ID=gene-AD39_RS18500;Name=sxy;gbkey=Gene;gene=sxy;gene_biotype=protein_coding;locus_tag=AD39_RS18500;old_locus_tag=AD39_1018 NZ_JJLH01000014.1 Protein Homology CDS 224357 224986 . + 0 ID=cds-WP_000839153.1;Parent=gene-AD39_RS18500;Dbxref=GenBank:WP_000839153.1;Name=WP_000839153.1;gbkey=CDS;gene=sxy;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415479.1;locus_tag=AD39_RS18500;product=CRP-S regulon transcriptional coactivator Sxy;protein_id=WP_000839153.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 224949 227111 . - . ID=gene-AD39_RS18495;Name=yccS;gbkey=Gene;gene=yccS;gene_biotype=protein_coding;locus_tag=AD39_RS18495;old_locus_tag=AD39_1019 NZ_JJLH01000014.1 Protein Homology CDS 224949 227111 . - 0 ID=cds-WP_000875019.1;Parent=gene-AD39_RS18495;Dbxref=GenBank:WP_000875019.1;Name=WP_000875019.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yccS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309071.3;locus_tag=AD39_RS18495;product=YccS family putative transporter;protein_id=WP_000875019.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 227121 227567 . - . ID=gene-AD39_RS18490;Name=yccF;gbkey=Gene;gene=yccF;gene_biotype=protein_coding;locus_tag=AD39_RS18490;old_locus_tag=AD39_1020 NZ_JJLH01000014.1 Protein Homology CDS 227121 227567 . - 0 ID=cds-WP_001261235.1;Parent=gene-AD39_RS18490;Dbxref=GenBank:WP_001261235.1;Name=WP_001261235.1;gbkey=CDS;gene=yccF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415481.1;locus_tag=AD39_RS18490;product=YccF domain-containing protein;protein_id=WP_001261235.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 227690 229744 . + . ID=gene-AD39_RS18485;Name=helD;gbkey=Gene;gene=helD;gene_biotype=protein_coding;locus_tag=AD39_RS18485;old_locus_tag=AD39_1021 NZ_JJLH01000014.1 Protein Homology CDS 227690 229744 . + 0 ID=cds-WP_032283130.1;Parent=gene-AD39_RS18485;Dbxref=GenBank:WP_032283130.1;Name=WP_032283130.1;Ontology_term=GO:0003677,GO:0003678,GO:0005524;gbkey=CDS;gene=helD;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415482.1;locus_tag=AD39_RS18485;product=DNA helicase IV;protein_id=WP_032283130.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 229776 230234 . - . ID=gene-AD39_RS18480;Name=mgsA;gbkey=Gene;gene=mgsA;gene_biotype=protein_coding;locus_tag=AD39_RS18480;old_locus_tag=AD39_1022 NZ_JJLH01000014.1 Protein Homology CDS 229776 230234 . - 0 ID=cds-WP_000424181.1;Parent=gene-AD39_RS18480;Dbxref=GenBank:WP_000424181.1;Name=WP_000424181.1;Ontology_term=GO:0006007,GO:0019242,GO:0008929;gbkey=CDS;gene=mgsA;go_function=methylglyoxal synthase activity|0008929||IEA;go_process=glucose catabolic process|0006007||IEA,methylglyoxal biosynthetic process|0019242||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415483.2;locus_tag=AD39_RS18480;product=methylglyoxal synthase;protein_id=WP_000424181.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 230330 230992 . - . ID=gene-AD39_RS18475;Name=csgI;gbkey=Gene;gene=csgI;gene_biotype=protein_coding;locus_tag=AD39_RS18475;old_locus_tag=AD39_1023 NZ_JJLH01000014.1 Protein Homology CDS 230330 230992 . - 0 ID=cds-WP_000847786.1;Parent=gene-AD39_RS18475;Dbxref=GenBank:WP_000847786.1;Name=WP_000847786.1;gbkey=CDS;gene=csgI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309075.1;locus_tag=AD39_RS18475;product=DUF2057 family protein;protein_id=WP_000847786.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 231165 231578 . + . ID=gene-AD39_RS18465;Name=yccU;gbkey=Gene;gene=yccU;gene_biotype=protein_coding;locus_tag=AD39_RS18465;old_locus_tag=AD39_1025 NZ_JJLH01000014.1 Protein Homology CDS 231165 231578 . + 0 ID=cds-WP_000665217.1;Parent=gene-AD39_RS18465;Dbxref=GenBank:WP_000665217.1;Name=WP_000665217.1;Ontology_term=GO:0120225;gbkey=CDS;gene=yccU;go_function=coenzyme A binding|0120225||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309076.1;locus_tag=AD39_RS18465;product=CoA-binding protein;protein_id=WP_000665217.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 231623 231940 . - . ID=gene-AD39_RS18460;Name=hspQ;gbkey=Gene;gene=hspQ;gene_biotype=protein_coding;locus_tag=AD39_RS18460;old_locus_tag=AD39_1026 NZ_JJLH01000014.1 Protein Homology CDS 231623 231940 . - 0 ID=cds-WP_032283132.1;Parent=gene-AD39_RS18460;Dbxref=GenBank:WP_032283132.1;Name=WP_032283132.1;gbkey=CDS;gene=hspQ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123508.1;locus_tag=AD39_RS18460;product=heat shock protein HspQ;protein_id=WP_032283132.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 231998 233188 . - . ID=gene-AD39_RS18455;Name=rlmI;gbkey=Gene;gene=rlmI;gene_biotype=protein_coding;locus_tag=AD39_RS18455;old_locus_tag=AD39_1027 NZ_JJLH01000014.1 Protein Homology CDS 231998 233188 . - 0 ID=cds-WP_001598355.1;Parent=gene-AD39_RS18455;Dbxref=GenBank:WP_001598355.1;Name=WP_001598355.1;Ontology_term=GO:0003723,GO:0008649;gbkey=CDS;gene=rlmI;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415487.4;locus_tag=AD39_RS18455;product=23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI;protein_id=WP_001598355.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 233283 233561 . + . ID=gene-AD39_RS18450;Name=yccX;gbkey=Gene;gene=yccX;gene_biotype=protein_coding;locus_tag=AD39_RS18450;old_locus_tag=AD39_1028 NZ_JJLH01000014.1 Protein Homology CDS 233283 233561 . + 0 ID=cds-WP_032283133.1;Parent=gene-AD39_RS18450;Dbxref=GenBank:WP_032283133.1;Name=WP_032283133.1;Ontology_term=GO:0003998;gbkey=CDS;gene=yccX;go_function=acylphosphatase activity|0003998||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000048233.1;locus_tag=AD39_RS18450;product=acylphosphatase;protein_id=WP_032283133.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 233558 233887 . - . ID=gene-AD39_RS18445;Name=tusE;gbkey=Gene;gene=tusE;gene_biotype=protein_coding;locus_tag=AD39_RS18445;old_locus_tag=AD39_1029 NZ_JJLH01000014.1 Protein Homology CDS 233558 233887 . - 0 ID=cds-WP_001542786.1;Parent=gene-AD39_RS18445;Dbxref=GenBank:WP_001542786.1;Name=WP_001542786.1;gbkey=CDS;gene=tusE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309080.2;locus_tag=AD39_RS18445;product=sulfurtransferase TusE;protein_id=WP_001542786.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 233978 234637 . - . ID=gene-AD39_RS18440;Name=yccA;gbkey=Gene;gene=yccA;gene_biotype=protein_coding;locus_tag=AD39_RS18440;old_locus_tag=AD39_1030 NZ_JJLH01000014.1 Protein Homology CDS 233978 234637 . - 0 ID=cds-WP_000375136.1;Parent=gene-AD39_RS18440;Dbxref=GenBank:WP_000375136.1;Name=WP_000375136.1;gbkey=CDS;gene=yccA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000375124.1;locus_tag=AD39_RS18440;product=FtsH protease modulator YccA;protein_id=WP_000375136.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 234844 234931 . - . ID=gene-AD39_RS18435;Name=AD39_RS18435;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS18435;old_locus_tag=AD39_1031 NZ_JJLH01000014.1 tRNAscan-SE tRNA 234844 234931 . - . ID=rna-AD39_RS18435;Parent=gene-AD39_RS18435;anticodon=(pos:complement(234895..234897));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS18435;product=tRNA-Ser NZ_JJLH01000014.1 tRNAscan-SE exon 234844 234931 . - . ID=exon-AD39_RS18435-1;Parent=rna-AD39_RS18435;anticodon=(pos:complement(234895..234897));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS18435;product=tRNA-Ser NZ_JJLH01000014.1 RefSeq gene 235358 236476 . + . ID=gene-AD39_RS18430;Name=hyaA;gbkey=Gene;gene=hyaA;gene_biotype=protein_coding;locus_tag=AD39_RS18430;old_locus_tag=AD39_1032 NZ_JJLH01000014.1 Protein Homology CDS 235358 236476 . + 0 ID=cds-WP_001058323.1;Parent=gene-AD39_RS18430;Dbxref=GenBank:WP_001058323.1;Name=WP_001058323.1;gbkey=CDS;gene=hyaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415491.1;locus_tag=AD39_RS18430;product=hydrogenase 1 small subunit;protein_id=WP_001058323.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 236473 238266 . + . ID=gene-AD39_RS18425;Name=hyaB;gbkey=Gene;gene=hyaB;gene_biotype=protein_coding;locus_tag=AD39_RS18425;old_locus_tag=AD39_1033 NZ_JJLH01000014.1 Protein Homology CDS 236473 238266 . + 0 ID=cds-WP_000107384.1;Parent=gene-AD39_RS18425;Dbxref=GenBank:WP_000107384.1;Name=WP_000107384.1;gbkey=CDS;gene=hyaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415492.1;locus_tag=AD39_RS18425;product=Ni/Fe-hydrogenase large subunit;protein_id=WP_000107384.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 238285 238992 . + . ID=gene-AD39_RS18420;Name=hyaC;gbkey=Gene;gene=hyaC;gene_biotype=protein_coding;locus_tag=AD39_RS18420;old_locus_tag=AD39_1034 NZ_JJLH01000014.1 Protein Homology CDS 238285 238992 . + 0 ID=cds-WP_001186421.1;Parent=gene-AD39_RS18420;Dbxref=GenBank:WP_001186421.1;Name=WP_001186421.1;gbkey=CDS;gene=hyaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309157.1;locus_tag=AD39_RS18420;product=Ni/Fe-hydrogenase b-type cytochrome subunit;protein_id=WP_001186421.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 238989 239576 . + . ID=gene-AD39_RS18415;Name=hyaD;gbkey=Gene;gene=hyaD;gene_biotype=protein_coding;locus_tag=AD39_RS18415;old_locus_tag=AD39_1035 NZ_JJLH01000014.1 Protein Homology CDS 238989 239576 . + 0 ID=cds-WP_000003671.1;Parent=gene-AD39_RS18415;Dbxref=GenBank:WP_000003671.1;Name=WP_000003671.1;gbkey=CDS;gene=hyaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415494.1;locus_tag=AD39_RS18415;product=hydrogenase 1 maturation protease;protein_id=WP_000003671.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 239573 239971 . + . ID=gene-AD39_RS18410;Name=hyaE;gbkey=Gene;gene=hyaE;gene_biotype=protein_coding;locus_tag=AD39_RS18410;old_locus_tag=AD39_1036 NZ_JJLH01000014.1 Protein Homology CDS 239573 239971 . + 0 ID=cds-WP_000063978.1;Parent=gene-AD39_RS18410;Dbxref=GenBank:WP_000063978.1;Name=WP_000063978.1;gbkey=CDS;gene=hyaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415495.1;locus_tag=AD39_RS18410;product=hydrogenase-1 operon protein HyaE;protein_id=WP_000063978.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 239968 240825 . + . ID=gene-AD39_RS18405;Name=hyaF;gbkey=Gene;gene=hyaF;gene_biotype=protein_coding;locus_tag=AD39_RS18405;old_locus_tag=AD39_1037 NZ_JJLH01000014.1 Protein Homology CDS 239968 240825 . + 0 ID=cds-WP_032287511.1;Parent=gene-AD39_RS18405;Dbxref=GenBank:WP_032287511.1;Name=WP_032287511.1;gbkey=CDS;gene=hyaF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309160.1;locus_tag=AD39_RS18405;product=hydrogenase expression/formation protein;protein_id=WP_032287511.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 240959 242503 . + . ID=gene-AD39_RS18400;Name=appC;gbkey=Gene;gene=appC;gene_biotype=protein_coding;locus_tag=AD39_RS18400;old_locus_tag=AD39_1038 NZ_JJLH01000014.1 Protein Homology CDS 240959 242503 . + 0 ID=cds-WP_000263563.1;Parent=gene-AD39_RS18400;Dbxref=GenBank:WP_000263563.1;Name=WP_000263563.1;gbkey=CDS;gene=appC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706901.2;locus_tag=AD39_RS18400;product=cytochrome bd-II oxidase subunit 1;protein_id=WP_000263563.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 242515 243651 . + . ID=gene-AD39_RS18395;Name=appB;gbkey=Gene;gene=appB;gene_biotype=protein_coding;locus_tag=AD39_RS18395;old_locus_tag=AD39_1039 NZ_JJLH01000014.1 Protein Homology CDS 242515 243651 . + 0 ID=cds-WP_000460803.1;Parent=gene-AD39_RS18395;Dbxref=GenBank:WP_000460803.1;Name=WP_000460803.1;gbkey=CDS;gene=appB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415498.1;locus_tag=AD39_RS18395;product=cytochrome d ubiquinol oxidase subunit II;protein_id=WP_000460803.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 243664 243756 . + . ID=gene-AD39_RS0123575;Name=cbdX;gbkey=Gene;gene=cbdX;gene_biotype=protein_coding;locus_tag=AD39_RS0123575 NZ_JJLH01000014.1 Protein Homology CDS 243664 243756 . + 0 ID=cds-WP_000270305.1;Parent=gene-AD39_RS0123575;Dbxref=GenBank:WP_000270305.1;Name=WP_000270305.1;gbkey=CDS;gene=cbdX;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165313.1;locus_tag=AD39_RS0123575;product=cytochrome bd-II oxidase subunit CbdX;protein_id=WP_000270305.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 243836 245134 . + . ID=gene-AD39_RS18390;Name=appA;gbkey=Gene;gene=appA;gene_biotype=protein_coding;locus_tag=AD39_RS18390;old_locus_tag=AD39_1040 NZ_JJLH01000014.1 Protein Homology CDS 243836 245134 . + 0 ID=cds-WP_001297112.1;Parent=gene-AD39_RS18390;Dbxref=GenBank:WP_001297112.1;Name=WP_001297112.1;gbkey=CDS;gene=appA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415500.1;locus_tag=AD39_RS18390;product=bifunctional acid phosphatase/4-phytase;protein_id=WP_001297112.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 245249 247429 . - . ID=gene-AD39_RS18385;Name=etk;gbkey=Gene;gene=etk;gene_biotype=protein_coding;locus_tag=AD39_RS18385;old_locus_tag=AD39_1041 NZ_JJLH01000014.1 Protein Homology CDS 245249 247429 . - 0 ID=cds-WP_000208650.1;Parent=gene-AD39_RS18385;Dbxref=GenBank:WP_000208650.1;Name=WP_000208650.1;Ontology_term=GO:0009103,GO:0016020;gbkey=CDS;gene=etk;go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415501.1;locus_tag=AD39_RS18385;product=tyrosine-protein kinase;protein_id=WP_000208650.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 247449 247895 . - . ID=gene-AD39_RS18380;Name=etp;gbkey=Gene;gene=etp;gene_biotype=protein_coding;gene_synonym=yccY;locus_tag=AD39_RS18380;old_locus_tag=AD39_1042 NZ_JJLH01000014.1 Protein Homology CDS 247449 247895 . - 0 ID=cds-WP_000057871.1;Parent=gene-AD39_RS18380;Dbxref=GenBank:WP_000057871.1;Name=WP_000057871.1;gbkey=CDS;gene=etp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309165.2;locus_tag=AD39_RS18380;product=protein-tyrosine-phosphatase Etp;protein_id=WP_000057871.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 247883 249022 . - . ID=gene-AD39_RS18375;Name=gfcE;gbkey=Gene;gene=gfcE;gene_biotype=protein_coding;locus_tag=AD39_RS18375;old_locus_tag=AD39_1043 NZ_JJLH01000014.1 Protein Homology CDS 247883 249022 . - 0 ID=cds-WP_001295357.1;Parent=gene-AD39_RS18375;Dbxref=GenBank:WP_001295357.1;Name=WP_001295357.1;Ontology_term=GO:0015774,GO:0016020;gbkey=CDS;gene=gfcE;go_component=membrane|0016020||IEA;go_process=polysaccharide transport|0015774||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309166.1;locus_tag=AD39_RS18375;product=polysaccharide export protein;protein_id=WP_001295357.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 249068 251164 . - . ID=gene-AD39_RS18370;Name=gfcD;gbkey=Gene;gene=gfcD;gene_biotype=protein_coding;locus_tag=AD39_RS18370;old_locus_tag=AD39_1044 NZ_JJLH01000014.1 Protein Homology CDS 249068 251164 . - 0 ID=cds-WP_000742348.1;Parent=gene-AD39_RS18370;Dbxref=GenBank:WP_000742348.1;Name=WP_000742348.1;gbkey=CDS;gene=gfcD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309167.1;locus_tag=AD39_RS18370;product=YjbH domain-containing protein;protein_id=WP_000742348.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 251164 251910 . - . ID=gene-AD39_RS18365;Name=gfcC;gbkey=Gene;gene=gfcC;gene_biotype=protein_coding;locus_tag=AD39_RS18365;old_locus_tag=AD39_1045 NZ_JJLH01000014.1 Protein Homology CDS 251164 251910 . - 0 ID=cds-WP_001038079.1;Parent=gene-AD39_RS18365;Dbxref=GenBank:WP_001038079.1;Name=WP_001038079.1;gbkey=CDS;gene=gfcC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415505.1;locus_tag=AD39_RS18365;product=capsule biosynthesis GfcC family protein;protein_id=WP_001038079.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 251907 252551 . - . ID=gene-AD39_RS18360;Name=gfcB;gbkey=Gene;gene=gfcB;gene_biotype=protein_coding;locus_tag=AD39_RS18360;old_locus_tag=AD39_1046 NZ_JJLH01000014.1 Protein Homology CDS 251907 252551 . - 0 ID=cds-WP_001247610.1;Parent=gene-AD39_RS18360;Dbxref=GenBank:WP_001247610.1;Name=WP_001247610.1;gbkey=CDS;gene=gfcB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415506.1;locus_tag=AD39_RS18360;product=lipoprotein GfcB;protein_id=WP_001247610.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 252658 252963 . - . ID=gene-AD39_RS18355;Name=AD39_RS18355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18355;old_locus_tag=AD39_1047 NZ_JJLH01000014.1 Protein Homology CDS 252658 252963 . - 0 ID=cds-WP_001299283.1;Parent=gene-AD39_RS18355;Dbxref=GenBank:WP_001299283.1;Name=WP_001299283.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309170.2;locus_tag=AD39_RS18355;product=threonine-rich inner membrane protein GfcA;protein_id=WP_001299283.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 253405 253617 . - . ID=gene-AD39_RS18350;Name=cspH;gbkey=Gene;gene=cspH;gene_biotype=protein_coding;locus_tag=AD39_RS18350;old_locus_tag=AD39_1048 NZ_JJLH01000014.1 Protein Homology CDS 253405 253617 . - 0 ID=cds-WP_000087763.1;Parent=gene-AD39_RS18350;Dbxref=GenBank:WP_000087763.1;Name=WP_000087763.1;gbkey=CDS;gene=cspH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415509.1;locus_tag=AD39_RS18350;product=cold shock-like protein CspH;protein_id=WP_000087763.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 253903 254115 . + . ID=gene-AD39_RS18345;Name=cspG;gbkey=Gene;gene=cspG;gene_biotype=protein_coding;locus_tag=AD39_RS18345;old_locus_tag=AD39_1049 NZ_JJLH01000014.1 Protein Homology CDS 253903 254115 . + 0 ID=cds-WP_000066490.1;Parent=gene-AD39_RS18345;Dbxref=GenBank:WP_000066490.1;Name=WP_000066490.1;gbkey=CDS;gene=cspG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309172.1;locus_tag=AD39_RS18345;product=cold shock protein CspG;protein_id=WP_000066490.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 254126 254314 . + . ID=gene-AD39_RS26595;Name=ymcF;gbkey=Gene;gene=ymcF;gene_biotype=protein_coding;locus_tag=AD39_RS26595 NZ_JJLH01000014.1 Protein Homology CDS 254126 254314 . + 0 ID=cds-WP_071524879.1;Parent=gene-AD39_RS26595;Dbxref=GenBank:WP_071524879.1;Name=WP_071524879.1;gbkey=CDS;gene=ymcF;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518761.1;locus_tag=AD39_RS26595;product=cold-shock protein;protein_id=WP_071524879.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 254289 254519 . + . ID=gene-AD39_RS0123580;Name=ymcE;gbkey=Gene;gene=ymcE;gene_biotype=protein_coding;locus_tag=AD39_RS0123580 NZ_JJLH01000014.1 Protein Homology CDS 254289 254519 . + 0 ID=cds-WP_001323678.1;Parent=gene-AD39_RS0123580;Dbxref=GenBank:WP_001323678.1;Name=WP_001323678.1;gbkey=CDS;gene=ymcE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706913.1;locus_tag=AD39_RS0123580;product=protein YmcE;protein_id=WP_001323678.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 254509 254682 . + . ID=gene-AD39_RS18340;Name=gnsA;gbkey=Gene;gene=gnsA;gene_biotype=protein_coding;locus_tag=AD39_RS18340;old_locus_tag=AD39_1050 NZ_JJLH01000014.1 Protein Homology CDS 254509 254682 . + 0 ID=cds-WP_001019197.1;Parent=gene-AD39_RS18340;Dbxref=GenBank:WP_001019197.1;Name=WP_001019197.1;gbkey=CDS;gene=gnsA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588446.1;locus_tag=AD39_RS18340;product=GnsA/GnsB family addiction module toxin;protein_id=WP_001019197.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 254731 255804 . - . ID=gene-AD39_RS18335;Name=yccM;gbkey=Gene;gene=yccM;gene_biotype=protein_coding;locus_tag=AD39_RS18335;old_locus_tag=AD39_1051 NZ_JJLH01000014.1 Protein Homology CDS 254731 255804 . - 0 ID=cds-WP_032287512.1;Parent=gene-AD39_RS18335;Dbxref=GenBank:WP_032287512.1;Name=WP_032287512.1;Ontology_term=GO:0051539;gbkey=CDS;gene=yccM;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415512.1;locus_tag=AD39_RS18335;product=4Fe-4S binding protein;protein_id=WP_032287512.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 255876 258620 . - . ID=gene-AD39_RS18330;Name=torS;gbkey=Gene;gene=torS;gene_biotype=protein_coding;locus_tag=AD39_RS18330;old_locus_tag=AD39_1052 NZ_JJLH01000014.1 Protein Homology CDS 255876 258620 . - 0 ID=cds-WP_001442214.1;Parent=gene-AD39_RS18330;Dbxref=GenBank:WP_001442214.1;Name=WP_001442214.1;gbkey=CDS;gene=torS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415513.2;locus_tag=AD39_RS18330;product=TMAO reductase system sensor histidine kinase/response regulator TorS;protein_id=WP_001442214.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 258703 259731 . + . ID=gene-AD39_RS18325;Name=torT;gbkey=Gene;gene=torT;gene_biotype=protein_coding;locus_tag=AD39_RS18325;old_locus_tag=AD39_1053 NZ_JJLH01000014.1 Protein Homology CDS 258703 259731 . + 0 ID=cds-WP_032283134.1;Parent=gene-AD39_RS18325;Dbxref=GenBank:WP_032283134.1;Name=WP_032283134.1;gbkey=CDS;gene=torT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706917.1;locus_tag=AD39_RS18325;product=TMAO reductase system periplasmic protein TorT;protein_id=WP_032283134.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 259704 260396 . - . ID=gene-AD39_RS18320;Name=torR;gbkey=Gene;gene=torR;gene_biotype=protein_coding;locus_tag=AD39_RS18320;old_locus_tag=AD39_1054 NZ_JJLH01000014.1 Protein Homology CDS 259704 260396 . - 0 ID=cds-WP_001120112.1;Parent=gene-AD39_RS18320;Dbxref=GenBank:WP_001120112.1;Name=WP_001120112.1;gbkey=CDS;gene=torR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309177.1;locus_tag=AD39_RS18320;product=two-component system response regulator TorR;protein_id=WP_001120112.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 260526 261698 . + . ID=gene-AD39_RS18315;Name=torC;gbkey=Gene;gene=torC;gene_biotype=protein_coding;locus_tag=AD39_RS18315;old_locus_tag=AD39_1055 NZ_JJLH01000014.1 Protein Homology CDS 260526 261698 . + 0 ID=cds-WP_032287513.1;Parent=gene-AD39_RS18315;Dbxref=GenBank:WP_032287513.1;Name=WP_032287513.1;Ontology_term=GO:0009055,GO:0020037,GO:0016020;gbkey=CDS;gene=torC;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415516.1;locus_tag=AD39_RS18315;product=pentaheme c-type cytochrome TorC;protein_id=WP_032287513.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 261698 264244 . + . ID=gene-AD39_RS18310;Name=torA;gbkey=Gene;gene=torA;gene_biotype=protein_coding;locus_tag=AD39_RS18310;old_locus_tag=AD39_1056 NZ_JJLH01000014.1 Protein Homology CDS 261698 264244 . + 0 ID=cds-WP_001062098.1;Parent=gene-AD39_RS18310;Dbxref=GenBank:WP_001062098.1;Name=WP_001062098.1;Ontology_term=GO:0030151,GO:0043546,GO:0050626,GO:0042597;gbkey=CDS;gene=torA;go_component=periplasmic space|0042597||IEA;go_function=molybdenum ion binding|0030151||IEA,molybdopterin cofactor binding|0043546||IEA,trimethylamine-N-oxide reductase (cytochrome c) activity|0050626||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415517.1;locus_tag=AD39_RS18310;product=trimethylamine-N-oxide reductase TorA;protein_id=WP_001062098.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 264241 264840 . + . ID=gene-AD39_RS18305;Name=torD;gbkey=Gene;gene=torD;gene_biotype=protein_coding;locus_tag=AD39_RS18305;old_locus_tag=AD39_1057 NZ_JJLH01000014.1 Protein Homology CDS 264241 264840 . + 0 ID=cds-WP_000209869.1;Parent=gene-AD39_RS18305;Dbxref=GenBank:WP_000209869.1;Name=WP_000209869.1;Ontology_term=GO:0051259;gbkey=CDS;gene=torD;go_process=protein complex oligomerization|0051259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415518.1;locus_tag=AD39_RS18305;product=molecular chaperone TorD;protein_id=WP_000209869.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 264933 265238 . - . ID=gene-AD39_RS18300;Name=cbpM;gbkey=Gene;gene=cbpM;gene_biotype=protein_coding;locus_tag=AD39_RS18300;old_locus_tag=AD39_1058 NZ_JJLH01000014.1 Protein Homology CDS 264933 265238 . - 0 ID=cds-WP_000024560.1;Parent=gene-AD39_RS18300;Dbxref=GenBank:WP_000024560.1;Name=WP_000024560.1;gbkey=CDS;gene=cbpM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309181.1;locus_tag=AD39_RS18300;product=chaperone modulator CbpM;protein_id=WP_000024560.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 265238 266158 . - . ID=gene-AD39_RS18295;Name=cbpA;gbkey=Gene;gene=cbpA;gene_biotype=protein_coding;locus_tag=AD39_RS18295;old_locus_tag=AD39_1059 NZ_JJLH01000014.1 Protein Homology CDS 265238 266158 . - 0 ID=cds-WP_000420617.1;Parent=gene-AD39_RS18295;Dbxref=GenBank:WP_000420617.1;Name=WP_000420617.1;Ontology_term=GO:0006457,GO:0051082;gbkey=CDS;gene=cbpA;go_function=unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415520.1;locus_tag=AD39_RS18295;product=curved DNA-binding protein;protein_id=WP_000420617.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 266419 267678 . + . ID=gene-AD39_RS18290;Name=AD39_RS18290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18290;old_locus_tag=AD39_1060 NZ_JJLH01000014.1 Protein Homology CDS 266419 267678 . + 0 ID=cds-WP_032283137.1;Parent=gene-AD39_RS18290;Dbxref=GenBank:WP_032283137.1;Name=WP_032283137.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000097604.1;locus_tag=AD39_RS18290;product=YccE family protein;protein_id=WP_032283137.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 267967 269208 . + . ID=gene-AD39_RS18285;Name=agp;gbkey=Gene;gene=agp;gene_biotype=protein_coding;locus_tag=AD39_RS18285;old_locus_tag=AD39_1063 NZ_JJLH01000014.1 Protein Homology CDS 267967 269208 . + 0 ID=cds-WP_001044265.1;Parent=gene-AD39_RS18285;Dbxref=GenBank:WP_001044265.1;Name=WP_001044265.1;gbkey=CDS;gene=agp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415522.1;locus_tag=AD39_RS18285;product=bifunctional glucose-1-phosphatase/inositol phosphatase;protein_id=WP_001044265.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 269246 269473 . - . ID=gene-AD39_RS18280;Name=yccJ;gbkey=Gene;gene=yccJ;gene_biotype=protein_coding;locus_tag=AD39_RS18280;old_locus_tag=AD39_1064 NZ_JJLH01000014.1 Protein Homology CDS 269246 269473 . - 0 ID=cds-WP_001143120.1;Parent=gene-AD39_RS18280;Dbxref=GenBank:WP_001143120.1;Name=WP_001143120.1;gbkey=CDS;gene=yccJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002898701.1;locus_tag=AD39_RS18280;product=YccJ family protein;protein_id=WP_001143120.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 269494 270090 . - . ID=gene-AD39_RS18275;Name=wrbA;gbkey=Gene;gene=wrbA;gene_biotype=protein_coding;locus_tag=AD39_RS18275;old_locus_tag=AD39_1065 NZ_JJLH01000014.1 Protein Homology CDS 269494 270090 . - 0 ID=cds-WP_001151437.1;Parent=gene-AD39_RS18275;Dbxref=GenBank:WP_001151437.1;Name=WP_001151437.1;Ontology_term=GO:0003955,GO:0010181;gbkey=CDS;gene=wrbA;go_function=NAD(P)H dehydrogenase (quinone) activity|0003955||IEA,FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415524.1;locus_tag=AD39_RS18275;product=NAD(P)H:quinone oxidoreductase;protein_id=WP_001151437.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 270463 270636 . + . ID=gene-AD39_RS0123590;Name=ymdF;gbkey=Gene;gene=ymdF;gene_biotype=protein_coding;locus_tag=AD39_RS0123590;old_locus_tag=AD39_1066 NZ_JJLH01000014.1 Protein Homology CDS 270463 270636 . + 0 ID=cds-WP_001273658.1;Parent=gene-AD39_RS0123590;Dbxref=GenBank:WP_001273658.1;Name=WP_001273658.1;Ontology_term=GO:0006950;gbkey=CDS;gene=ymdF;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415525.2;locus_tag=AD39_RS0123590;product=general stress protein;protein_id=WP_001273658.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 270719 272047 . - . ID=gene-AD39_RS18270;Name=rutG;gbkey=Gene;gene=rutG;gene_biotype=protein_coding;locus_tag=AD39_RS18270;old_locus_tag=AD39_1067 NZ_JJLH01000014.1 Protein Homology CDS 270719 272047 . - 0 ID=cds-WP_032287514.1;Parent=gene-AD39_RS18270;Dbxref=GenBank:WP_032287514.1;Name=WP_032287514.1;Ontology_term=GO:0006864,GO:0015218,GO:0016020;gbkey=CDS;gene=rutG;go_component=membrane|0016020||IEA;go_function=pyrimidine nucleotide transmembrane transporter activity|0015218||IEA;go_process=pyrimidine nucleotide transport|0006864||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415526.4;locus_tag=AD39_RS18270;product=pyrimidine utilization transport protein G;protein_id=WP_032287514.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 272068 272562 . - . ID=gene-AD39_RS18265;Name=rutF;gbkey=Gene;gene=rutF;gene_biotype=protein_coding;locus_tag=AD39_RS18265;old_locus_tag=AD39_1068 NZ_JJLH01000014.1 Protein Homology CDS 272068 272562 . - 0 ID=cds-WP_001028095.1;Parent=gene-AD39_RS18265;Dbxref=GenBank:WP_001028095.1;Name=WP_001028095.1;Ontology_term=GO:0008752;gbkey=CDS;gene=rutF;go_function=FMN reductase [NAD(P)H] activity|0008752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309280.2;locus_tag=AD39_RS18265;product=NADH-dependent FMN reductase RutF;protein_id=WP_001028095.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 272573 273163 . - . ID=gene-AD39_RS18260;Name=rutE;gbkey=Gene;gene=rutE;gene_biotype=protein_coding;locus_tag=AD39_RS18260;old_locus_tag=AD39_1069 NZ_JJLH01000014.1 Protein Homology CDS 272573 273163 . - 0 ID=cds-WP_001001196.1;Parent=gene-AD39_RS18260;Dbxref=GenBank:WP_001001196.1;Name=WP_001001196.1;Ontology_term=GO:0016491;gbkey=CDS;gene=rutE;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706930.1;locus_tag=AD39_RS18260;product=malonic semialdehyde reductase;protein_id=WP_001001196.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 273173 273973 . - . ID=gene-AD39_RS18255;Name=rutD;gbkey=Gene;gene=rutD;gene_biotype=protein_coding;locus_tag=AD39_RS18255;old_locus_tag=AD39_1070 NZ_JJLH01000014.1 Protein Homology CDS 273173 273973 . - 0 ID=cds-WP_001307099.1;Parent=gene-AD39_RS18255;Dbxref=GenBank:WP_001307099.1;Name=WP_001307099.1;Ontology_term=GO:0006212,GO:0016811;gbkey=CDS;gene=rutD;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amides|0016811||IEA;go_process=uracil catabolic process|0006212||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415529.1;locus_tag=AD39_RS18255;product=pyrimidine utilization protein D;protein_id=WP_001307099.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 273981 274367 . - . ID=gene-AD39_RS18250;Name=rutC;gbkey=Gene;gene=rutC;gene_biotype=protein_coding;locus_tag=AD39_RS18250;old_locus_tag=AD39_1071 NZ_JJLH01000014.1 Protein Homology CDS 273981 274367 . - 0 ID=cds-WP_001126780.1;Parent=gene-AD39_RS18250;Dbxref=GenBank:WP_001126780.1;Name=WP_001126780.1;gbkey=CDS;gene=rutC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415530.1;locus_tag=AD39_RS18250;product=3-aminoacrylate deaminase;protein_id=WP_001126780.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 274379 275071 . - . ID=gene-AD39_RS18245;Name=rutB;gbkey=Gene;gene=rutB;gene_biotype=protein_coding;locus_tag=AD39_RS18245;old_locus_tag=AD39_1072 NZ_JJLH01000014.1 Protein Homology CDS 274379 275071 . - 0 ID=cds-WP_001307100.1;Parent=gene-AD39_RS18245;Dbxref=GenBank:WP_001307100.1;Name=WP_001307100.1;gbkey=CDS;gene=rutB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415531.2;locus_tag=AD39_RS18245;product=peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB;protein_id=WP_001307100.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 275071 276162 . - . ID=gene-AD39_RS18240;Name=rutA;gbkey=Gene;gene=rutA;gene_biotype=protein_coding;locus_tag=AD39_RS18240;old_locus_tag=AD39_1073 NZ_JJLH01000014.1 Protein Homology CDS 275071 276162 . - 0 ID=cds-WP_001345642.1;Parent=gene-AD39_RS18240;Dbxref=GenBank:WP_001345642.1;Name=WP_001345642.1;Ontology_term=GO:0010181,GO:0016491;gbkey=CDS;gene=rutA;go_function=FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309285.4;locus_tag=AD39_RS18240;product=pyrimidine utilization protein A;protein_id=WP_001345642.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 276450 277088 . + . ID=gene-AD39_RS18235;Name=rutR;gbkey=Gene;gene=rutR;gene_biotype=protein_coding;locus_tag=AD39_RS18235;old_locus_tag=AD39_1074 NZ_JJLH01000014.1 Protein Homology CDS 276450 277088 . + 0 ID=cds-WP_000191701.1;Parent=gene-AD39_RS18235;Dbxref=GenBank:WP_000191701.1;Name=WP_000191701.1;Ontology_term=GO:0045892,GO:0003677;gbkey=CDS;gene=rutR;go_function=DNA binding|0003677||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415533.1;locus_tag=AD39_RS18235;product=HTH-type transcriptional regulator RutR;protein_id=WP_000191701.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 277128 281090 . - . ID=gene-AD39_RS18230;Name=putA;gbkey=Gene;gene=putA;gene_biotype=protein_coding;locus_tag=AD39_RS18230;old_locus_tag=AD39_1075 NZ_JJLH01000014.1 Protein Homology CDS 277128 281090 . - 0 ID=cds-WP_032286053.1;Parent=gene-AD39_RS18230;Dbxref=GenBank:WP_032286053.1;Name=WP_032286053.1;Ontology_term=GO:0006355,GO:0006561,GO:0003700,GO:0003842,GO:0004657,GO:0016620;gbkey=CDS;gene=putA;go_function=DNA-binding transcription factor activity|0003700||IEA,1-pyrroline-5-carboxylate dehydrogenase activity|0003842||IEA,proline dehydrogenase activity|0004657||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,proline biosynthetic process|0006561||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309287.1;locus_tag=AD39_RS18230;product=trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase;protein_id=WP_032286053.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 281145 281354 . + . ID=gene-AD39_RS18225;Name=AD39_RS18225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18225;old_locus_tag=AD39_1076 NZ_JJLH01000014.1 GeneMarkS-2+ CDS 281145 281354 . + 0 ID=cds-WP_000979513.1;Parent=gene-AD39_RS18225;Dbxref=GenBank:WP_000979513.1;Name=WP_000979513.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS18225;product=hypothetical protein;protein_id=WP_000979513.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 281513 283021 . + . ID=gene-AD39_RS18220;Name=putP;gbkey=Gene;gene=putP;gene_biotype=protein_coding;locus_tag=AD39_RS18220;old_locus_tag=AD39_1078 NZ_JJLH01000014.1 Protein Homology CDS 281513 283021 . + 0 ID=cds-WP_032287515.1;Parent=gene-AD39_RS18220;Dbxref=GenBank:WP_032287515.1;Name=WP_032287515.1;Ontology_term=GO:0006814,GO:0015824,GO:0055085,GO:0005298,GO:0031402,GO:0016020;gbkey=CDS;gene=putP;go_component=membrane|0016020||IEA;go_function=proline:sodium symporter activity|0005298||IEA,sodium ion binding|0031402||IEA;go_process=sodium ion transport|0006814||IEA,proline transport|0015824||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415535.1;locus_tag=AD39_RS18220;product=sodium/proline symporter PutP;protein_id=WP_032287515.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 283563 284393 . + . ID=gene-AD39_RS18215;Name=efeU;gbkey=Gene;gene=efeU;gene_biotype=protein_coding;locus_tag=AD39_RS18215;old_locus_tag=AD39_1079 NZ_JJLH01000014.1 Protein Homology CDS 283563 284393 . + 0 ID=cds-WP_000497941.1;Parent=gene-AD39_RS18215;Dbxref=GenBank:WP_000497941.1;Name=WP_000497941.1;Ontology_term=GO:0034755,GO:0005381,GO:0033573;gbkey=CDS;gene=efeU;go_component=high-affinity iron permease complex|0033573||IEA;go_function=iron ion transmembrane transporter activity|0005381||IEA;go_process=iron ion transmembrane transport|0034755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309290.1;locus_tag=AD39_RS18215;product=iron uptake transporter permease EfeU;protein_id=WP_000497941.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 284451 285578 . + . ID=gene-AD39_RS18210;Name=efeO;gbkey=Gene;gene=efeO;gene_biotype=protein_coding;locus_tag=AD39_RS18210;old_locus_tag=AD39_1080 NZ_JJLH01000014.1 Protein Homology CDS 284451 285578 . + 0 ID=cds-WP_000154411.1;Parent=gene-AD39_RS18210;Dbxref=GenBank:WP_000154411.1;Name=WP_000154411.1;gbkey=CDS;gene=efeO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309291.1;locus_tag=AD39_RS18210;product=iron uptake system protein EfeO;protein_id=WP_000154411.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 285584 286855 . + . ID=gene-AD39_RS18205;Name=efeB;gbkey=Gene;gene=efeB;gene_biotype=protein_coding;locus_tag=AD39_RS18205;old_locus_tag=AD39_1081 NZ_JJLH01000014.1 Protein Homology CDS 285584 286855 . + 0 ID=cds-WP_001199164.1;Parent=gene-AD39_RS18205;Dbxref=GenBank:WP_001199164.1;Name=WP_001199164.1;Ontology_term=GO:0033212,GO:0004601,GO:0020037;gbkey=CDS;gene=efeB;go_function=peroxidase activity|0004601||IEA,heme binding|0020037||IEA;go_process=iron import into cell|0033212||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309292.1;locus_tag=AD39_RS18205;product=iron uptake transporter deferrochelatase/peroxidase subunit;protein_id=WP_001199164.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 287475 288263 . + . ID=gene-AD39_RS18200;Name=phoH;gbkey=Gene;gene=phoH;gene_biotype=protein_coding;locus_tag=AD39_RS18200;old_locus_tag=AD39_1083 NZ_JJLH01000014.1 Protein Homology CDS 287475 288263 . + 0 ID=cds-WP_001404976.1;Parent=gene-AD39_RS18200;Dbxref=GenBank:WP_001404976.1;Name=WP_001404976.1;gbkey=CDS;gene=phoH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001741490.1;locus_tag=AD39_RS18200;product=phosphate starvation-inducible protein PhoH;protein_id=WP_001404976.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 288844 289530 . + . ID=gene-AD39_RS18195;Name=AD39_RS18195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18195;old_locus_tag=AD39_1084 NZ_JJLH01000014.1 Protein Homology CDS 288844 289530 . + 0 ID=cds-WP_000009226.1;Parent=gene-AD39_RS18195;Dbxref=GenBank:WP_000009226.1;Name=WP_000009226.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016232851.1;locus_tag=AD39_RS18195;product=DUF2726 domain-containing protein;protein_id=WP_000009226.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 289802 289938 . - . ID=gene-AD39_RS26170;Name=AD39_RS26170;gbkey=Gene;gene_biotype=ncRNA;locus_tag=AD39_RS26170 NZ_JJLH01000014.1 cmsearch ncRNA 289802 289938 . - . ID=rna-AD39_RS26170;Parent=gene-AD39_RS26170;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26170;product=RtT sRNA NZ_JJLH01000014.1 cmsearch exon 289802 289938 . - . ID=exon-AD39_RS26170-1;Parent=rna-AD39_RS26170;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26170;product=RtT sRNA NZ_JJLH01000014.1 RefSeq gene 290157 291359 . + . ID=gene-AD39_RS18190;Name=AD39_RS18190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18190;old_locus_tag=AD39_1085 NZ_JJLH01000014.1 Protein Homology CDS 290157 291359 . + 0 ID=cds-WP_000279872.1;Parent=gene-AD39_RS18190;Dbxref=GenBank:WP_000279872.1;Name=WP_000279872.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309326.1;locus_tag=AD39_RS18190;product=tyrosine-type recombinase/integrase;protein_id=WP_000279872.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 291545 293362 . - . ID=gene-AD39_RS18185;Name=AD39_RS18185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18185;old_locus_tag=AD39_1086 NZ_JJLH01000014.1 Protein Homology CDS 291545 293362 . - 0 ID=cds-WP_000282209.1;Parent=gene-AD39_RS18185;Dbxref=GenBank:WP_000282209.1;Name=WP_000282209.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309327.1;locus_tag=AD39_RS18185;product=hypothetical protein;protein_id=WP_000282209.1;transl_table=11 NZ_JJLH01000014.1 RefSeq pseudogene 293559 294251 . + . ID=gene-AD39_RS28270;Name=AD39_RS28270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28270;pseudo=true NZ_JJLH01000014.1 Protein Homology CDS 293559 294251 . + 0 ID=cds-AD39_RS28270;Parent=gene-AD39_RS28270;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012477181.1;locus_tag=AD39_RS28270;product=IS1 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 294474 294770 . + . ID=gene-AD39_RS0123615;Name=AD39_RS0123615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123615;old_locus_tag=AD39_1089 NZ_JJLH01000014.1 Protein Homology CDS 294474 294770 . + 0 ID=cds-WP_001303889.1;Parent=gene-AD39_RS0123615;Dbxref=GenBank:WP_001303889.1;Name=WP_001303889.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309329.1;locus_tag=AD39_RS0123615;product=helix-turn-helix transcriptional regulator;protein_id=WP_001303889.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 295078 295194 . + . ID=gene-AD39_RS29640;Name=AD39_RS29640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29640 NZ_JJLH01000014.1 Protein Homology CDS 295078 295194 . + 0 ID=cds-WP_001451890.1;Parent=gene-AD39_RS29640;Dbxref=GenBank:WP_001451890.1;Name=WP_001451890.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024547.6;locus_tag=AD39_RS29640;product=hypothetical protein;protein_id=WP_001451890.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 295413 296846 . + . ID=gene-AD39_RS18175;Name=AD39_RS18175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18175;old_locus_tag=AD39_1090 NZ_JJLH01000014.1 Protein Homology CDS 295413 296846 . + 0 ID=cds-WP_000335703.1;Parent=gene-AD39_RS18175;Dbxref=GenBank:WP_000335703.1;Name=WP_000335703.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309330.1;locus_tag=AD39_RS18175;product=YfjI family protein;protein_id=WP_000335703.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 297667 298230 . + . ID=gene-AD39_RS18170;Name=AD39_RS18170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18170;old_locus_tag=AD39_1091 NZ_JJLH01000014.1 Protein Homology CDS 297667 298230 . + 0 ID=cds-WP_032171863.1;Parent=gene-AD39_RS18170;Dbxref=GenBank:WP_032171863.1;Name=WP_032171863.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309331.1;locus_tag=AD39_RS18170;product=inovirus-type Gp2 protein;protein_id=WP_032171863.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 298385 300745 . + . ID=gene-AD39_RS18165;Name=AD39_RS18165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18165;old_locus_tag=AD39_1092 NZ_JJLH01000014.1 Protein Homology CDS 298385 300745 . + 0 ID=cds-WP_032263363.1;Parent=gene-AD39_RS18165;Dbxref=GenBank:WP_032263363.1;Name=WP_032263363.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000233439.1;locus_tag=AD39_RS18165;product=TOTE conflict system archaeo-eukaryotic primase domain-containing protein;protein_id=WP_032263363.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 300763 300951 . - . ID=gene-AD39_RS18160;Name=AD39_RS18160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18160;old_locus_tag=AD39_1093 NZ_JJLH01000014.1 Protein Homology CDS 300763 300951 . - 0 ID=cds-WP_000035067.1;Parent=gene-AD39_RS18160;Dbxref=GenBank:WP_000035067.1;Name=WP_000035067.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000035067.1;locus_tag=AD39_RS18160;product=hypothetical protein;protein_id=WP_000035067.1;transl_table=11 NZ_JJLH01000014.1 RefSeq pseudogene 301018 301398 . - . ID=gene-AD39_RS28280;Name=AD39_RS28280;end_range=301398,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28280;old_locus_tag=AD39_1094;partial=true;pseudo=true NZ_JJLH01000014.1 Protein Homology CDS 301018 301398 . - 0 ID=cds-AD39_RS28280;Parent=gene-AD39_RS28280;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=301398,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000099160.1;locus_tag=AD39_RS28280;partial=true;product=IS66 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000014.1 RefSeq pseudogene 301404 301658 . - . ID=gene-AD39_RS0123625;Name=tnpB;gbkey=Gene;gene=tnpB;gene_biotype=pseudogene;locus_tag=AD39_RS0123625;old_locus_tag=AD39_1095;partial=true;pseudo=true;start_range=.,301404 NZ_JJLH01000014.1 Protein Homology CDS 301404 301658 . - 0 ID=cds-AD39_RS0123625;Parent=gene-AD39_RS0123625;Note=TnpB%2C as the term is used for proteins encoded by IS66 family insertion elements%2C is considered an accessory protein%2C since TnpC%2C encoded by a neighboring gene%2C is a DDE family transposase.%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;gene=tnpB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001536669.1;locus_tag=AD39_RS0123625;partial=true;product=IS66 family insertion sequence element accessory protein TnpB;pseudo=true;start_range=.,301404;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 301655 302059 . - . ID=gene-AD39_RS18150;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=protein_coding;locus_tag=AD39_RS18150;old_locus_tag=AD39_1096 NZ_JJLH01000014.1 Protein Homology CDS 301655 302059 . - 0 ID=cds-WP_001420502.1;Parent=gene-AD39_RS18150;Dbxref=GenBank:WP_001420502.1;Name=WP_001420502.1;gbkey=CDS;gene=tnpA;inference=COORDINATES: protein motif:HMM:NF047595.1;locus_tag=AD39_RS18150;product=IS66-like element accessory protein TnpA;protein_id=WP_001420502.1;transl_table=11 NZ_JJLH01000014.1 RefSeq pseudogene 302125 303471 . + . ID=gene-AD39_RS28920;Name=AD39_RS28920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28920;pseudo=true NZ_JJLH01000014.1 Protein Homology CDS 302125 303471 . + 0 ID=cds-AD39_RS28920;Parent=gene-AD39_RS28920;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012767745.1;locus_tag=AD39_RS28920;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000014.1 RefSeq pseudogene 303519 303704 . + . ID=gene-AD39_RS0123640;Name=AD39_RS0123640;end_range=303704,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0123640;partial=true;pseudo=true NZ_JJLH01000014.1 Protein Homology CDS 303519 303704 . + 0 ID=cds-AD39_RS0123640;Parent=gene-AD39_RS0123640;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=303704,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001751479.1;locus_tag=AD39_RS0123640;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 304192 304650 . + . ID=gene-AD39_RS0123650;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=protein_coding;locus_tag=AD39_RS0123650 NZ_JJLH01000014.1 Protein Homology CDS 304192 304650 . + 0 ID=cds-WP_032170757.1;Parent=gene-AD39_RS0123650;Dbxref=GenBank:WP_032170757.1;Name=WP_032170757.1;Ontology_term=GO:0004803;gbkey=CDS;gene=tnpA;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001550737.1;locus_tag=AD39_RS0123650;product=IS200/IS605 family transposase;protein_id=WP_032170757.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 305471 306165 . + . ID=gene-AD39_RS28295;Name=AD39_RS28295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28295 NZ_JJLH01000014.1 Protein Homology CDS 305471 305717 . + 0 ID=cds-WP_085949854.1;Parent=gene-AD39_RS28295;Dbxref=GenBank:WP_085949854.1;Name=WP_085949854.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012477181.1;locus_tag=AD39_RS28295;product=IS1 family transposase;protein_id=WP_085949854.1;transl_table=11 NZ_JJLH01000014.1 Protein Homology CDS 305717 306165 . + 2 ID=cds-WP_085949854.1;Parent=gene-AD39_RS28295;Dbxref=GenBank:WP_085949854.1;Name=WP_085949854.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012477181.1;locus_tag=AD39_RS28295;product=IS1 family transposase;protein_id=WP_085949854.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 306302 307873 . - . ID=gene-AD39_RS18140;Name=AD39_RS18140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18140;old_locus_tag=AD39_1104 NZ_JJLH01000014.1 Protein Homology CDS 306302 307873 . - 0 ID=cds-WP_000381402.1;Parent=gene-AD39_RS18140;Dbxref=GenBank:WP_000381402.1;Name=WP_000381402.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904571.1;locus_tag=AD39_RS18140;product=IS66-like element ISCro1 family transposase;protein_id=WP_000381402.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 307893 308240 . - . ID=gene-AD39_RS18135;Name=tnpB;gbkey=Gene;gene=tnpB;gene_biotype=protein_coding;locus_tag=AD39_RS18135;old_locus_tag=AD39_1105 NZ_JJLH01000014.1 Protein Homology CDS 307893 308240 . - 0 ID=cds-WP_000624622.1;Parent=gene-AD39_RS18135;Dbxref=GenBank:WP_000624622.1;Name=WP_000624622.1;Note=TnpB%2C as the term is used for proteins encoded by IS66 family insertion elements%2C is considered an accessory protein%2C since TnpC%2C encoded by a neighboring gene%2C is a DDE family transposase.;gbkey=CDS;gene=tnpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858152.1;locus_tag=AD39_RS18135;product=IS66 family insertion sequence element accessory protein TnpB;protein_id=WP_000624622.1;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 308240 308917 . - . ID=gene-AD39_RS0123670;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=protein_coding;locus_tag=AD39_RS0123670 NZ_JJLH01000014.1 Protein Homology CDS 308240 308917 . - 0 ID=cds-WP_001339397.1;Parent=gene-AD39_RS0123670;Dbxref=GenBank:WP_001339397.1;Name=WP_001339397.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;gene=tnpA;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001743492.1;locus_tag=AD39_RS0123670;product=IS66-like element accessory protein TnpA;protein_id=WP_001339397.1;transl_table=11 NZ_JJLH01000014.1 RefSeq pseudogene 308973 310093 . - . ID=gene-AD39_RS26655;Name=AD39_RS26655;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS26655;old_locus_tag=AD39_1107;partial=true;pseudo=true;start_range=.,308973 NZ_JJLH01000014.1 Protein Homology CDS 308973 310093 . - 0 ID=cds-AD39_RS26655;Parent=gene-AD39_RS26655;Note=programmed frameshift%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612175.1;locus_tag=AD39_RS26655;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,308973;transl_table=11 NZ_JJLH01000014.1 RefSeq gene 310690 314781 . + . ID=gene-AD39_RS18125;Name=espI;gbkey=Gene;gene=espI;gene_biotype=protein_coding;locus_tag=AD39_RS18125;old_locus_tag=AD39_1110 NZ_JJLH01000014.1 Protein Homology CDS 310690 314781 . + 0 ID=cds-WP_032173422.1;Parent=gene-AD39_RS18125;Dbxref=GenBank:WP_032173422.1;Name=WP_032173422.1;gbkey=CDS;gene=espI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_062895919.1;locus_tag=AD39_RS18125;product=serine protease autotransporter EspI;protein_id=WP_032173422.1;transl_table=11 NZ_JJLH01000014.1 RefSeq pseudogene 314902 315045 . - . ID=gene-AD39_RS26175;Name=AD39_RS26175;end_range=315045,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS26175;partial=true;pseudo=true NZ_JJLH01000014.1 Protein Homology CDS 314902 315045 . - 0 ID=cds-AD39_RS26175;Parent=gene-AD39_RS26175;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0015074;end_range=315045,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611998.1;locus_tag=AD39_RS26175;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000014.1 RefSeq pseudogene 315098 315478 . - . ID=gene-AD39_RS28300;Name=AD39_RS28300;end_range=315478,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28300;old_locus_tag=AD39_1111;partial=true;pseudo=true NZ_JJLH01000014.1 Protein Homology CDS 315098 315478 . - 0 ID=cds-AD39_RS28300;Parent=gene-AD39_RS28300;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=315478,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000099160.1;locus_tag=AD39_RS28300;partial=true;product=IS66 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000014.1 RefSeq pseudogene 315484 315738 . - . ID=gene-AD39_RS18115;Name=tnpB;gbkey=Gene;gene=tnpB;gene_biotype=pseudogene;locus_tag=AD39_RS18115;old_locus_tag=AD39_1112;partial=true;pseudo=true;start_range=.,315484 NZ_JJLH01000014.1 Protein Homology CDS 315484 315738 . - 0 ID=cds-AD39_RS18115;Parent=gene-AD39_RS18115;Note=TnpB%2C as the term is used for proteins encoded by IS66 family insertion elements%2C is considered an accessory protein%2C since TnpC%2C encoded by a neighboring gene%2C is a DDE family transposase.%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;gene=tnpB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001536669.1;locus_tag=AD39_RS18115;partial=true;product=IS66 family insertion sequence element accessory protein TnpB;pseudo=true;start_range=.,315484;transl_table=11 NZ_JJLH01000014.1 RefSeq pseudogene 315735 316015 . - . ID=gene-AD39_RS29645;Name=AD39_RS29645;end_range=316015,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29645;partial=true;pseudo=true NZ_JJLH01000014.1 GeneMarkS-2+ CDS 315735 316015 . - 2 ID=cds-AD39_RS29645;Parent=gene-AD39_RS29645;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=316015,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS29645;partial=true;product=IS66-like element accessory protein TnpA;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000015.1 1 168809 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000015.1 RefSeq region 1 168809 . + . ID=NZ_JJLH01000015.1:1..168809;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000015.1 RefSeq gene 1 2591 . + . ID=gene-AD39_RS0123700;Name=AD39_RS0123700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123700;old_locus_tag=AD39_1113;partial=true;start_range=.,1 NZ_JJLH01000015.1 Protein Homology CDS 1 2591 . + 2 ID=cds-WP_032283142.1;Parent=gene-AD39_RS0123700;Dbxref=GenBank:WP_032283142.1;Name=WP_032283142.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309423.1;locus_tag=AD39_RS0123700;partial=true;product=Ag43/Cah family autotransporter adhesin;protein_id=WP_032283142.1;start_range=.,1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 2702 5086 . + . ID=gene-AD39_RS18110;Name=AD39_RS18110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18110;old_locus_tag=AD39_1114 NZ_JJLH01000015.1 Protein Homology CDS 2702 5086 . + 0 ID=cds-WP_021528116.1;Parent=gene-AD39_RS18110;Dbxref=GenBank:WP_021528116.1;Name=WP_021528116.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309424.1;locus_tag=AD39_RS18110;product=dynamin family protein;protein_id=WP_021528116.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 5083 5988 . + . ID=gene-AD39_RS18105;Name=AD39_RS18105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18105;old_locus_tag=AD39_1115 NZ_JJLH01000015.1 Protein Homology CDS 5083 5988 . + 0 ID=cds-WP_000203541.1;Parent=gene-AD39_RS18105;Dbxref=GenBank:WP_000203541.1;Name=WP_000203541.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309425.1;locus_tag=AD39_RS18105;product=diguanylate cyclase regulator RdcB family protein;protein_id=WP_000203541.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 5985 7055 . + . ID=gene-AD39_RS18100;Name=AD39_RS18100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18100;old_locus_tag=AD39_1116 NZ_JJLH01000015.1 Protein Homology CDS 5985 7055 . + 0 ID=cds-WP_000102669.1;Parent=gene-AD39_RS18100;Dbxref=GenBank:WP_000102669.1;Name=WP_000102669.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309426.1;locus_tag=AD39_RS18100;product=patatin-like phospholipase family protein;protein_id=WP_000102669.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 7395 8213 . + . ID=gene-AD39_RS18090;Name=AD39_RS18090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18090;old_locus_tag=AD39_1118 NZ_JJLH01000015.1 Protein Homology CDS 7395 8213 . + 0 ID=cds-WP_032283143.1;Parent=gene-AD39_RS18090;Dbxref=GenBank:WP_032283143.1;Name=WP_032283143.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309428.1;locus_tag=AD39_RS18090;product=DUF932 domain-containing protein;protein_id=WP_032283143.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 8304 8789 . + . ID=gene-AD39_RS18085;Name=AD39_RS18085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18085;old_locus_tag=AD39_1119 NZ_JJLH01000015.1 Protein Homology CDS 8304 8789 . + 0 ID=cds-WP_000214398.1;Parent=gene-AD39_RS18085;Dbxref=GenBank:WP_000214398.1;Name=WP_000214398.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309429.1;locus_tag=AD39_RS18085;product=antirestriction protein;protein_id=WP_000214398.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 8805 9281 . + . ID=gene-AD39_RS18080;Name=AD39_RS18080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18080;old_locus_tag=AD39_1120 NZ_JJLH01000015.1 Protein Homology CDS 8805 9281 . + 0 ID=cds-WP_001186738.1;Parent=gene-AD39_RS18080;Dbxref=GenBank:WP_001186738.1;Name=WP_001186738.1;Ontology_term=GO:0006508,GO:0008237,GO:0046872;gbkey=CDS;go_function=metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309430.1;locus_tag=AD39_RS18080;product=JAB domain-containing protein;protein_id=WP_001186738.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 9344 9565 . + . ID=gene-AD39_RS18075;Name=AD39_RS18075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18075;old_locus_tag=AD39_1121 NZ_JJLH01000015.1 Protein Homology CDS 9344 9565 . + 0 ID=cds-WP_001220314.1;Parent=gene-AD39_RS18075;Dbxref=GenBank:WP_001220314.1;Name=WP_001220314.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309431.1;locus_tag=AD39_RS18075;product=DUF987 domain-containing protein;protein_id=WP_001220314.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 9728 10102 . + . ID=gene-AD39_RS0123705;Name=AD39_RS0123705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123705;old_locus_tag=AD39_1123 NZ_JJLH01000015.1 Protein Homology CDS 9728 10102 . + 0 ID=cds-WP_001280955.1;Parent=gene-AD39_RS0123705;Dbxref=GenBank:WP_001280955.1;Name=WP_001280955.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309432.1;locus_tag=AD39_RS0123705;product=type IV toxin-antitoxin system YeeU family antitoxin;protein_id=WP_001280955.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 10149 10523 . + . ID=gene-AD39_RS18065;Name=AD39_RS18065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18065;old_locus_tag=AD39_1124 NZ_JJLH01000015.1 Protein Homology CDS 10149 10523 . + 0 ID=cds-WP_000854914.1;Parent=gene-AD39_RS18065;Dbxref=GenBank:WP_000854914.1;Name=WP_000854914.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309433.1;locus_tag=AD39_RS18065;product=TA system toxin CbtA family protein;protein_id=WP_000854914.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 10520 11011 . + . ID=gene-AD39_RS18060;Name=AD39_RS18060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18060;old_locus_tag=AD39_1125 NZ_JJLH01000015.1 Protein Homology CDS 10520 11011 . + 0 ID=cds-WP_000976857.1;Parent=gene-AD39_RS18060;Dbxref=GenBank:WP_000976857.1;Name=WP_000976857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309434.3;locus_tag=AD39_RS18060;product=DUF5983 family protein;protein_id=WP_000976857.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 11023 11220 . + . ID=gene-AD39_RS18055;Name=AD39_RS18055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18055;old_locus_tag=AD39_1126 NZ_JJLH01000015.1 Protein Homology CDS 11023 11220 . + 0 ID=cds-WP_000839282.1;Parent=gene-AD39_RS18055;Dbxref=GenBank:WP_000839282.1;Name=WP_000839282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309435.1;locus_tag=AD39_RS18055;product=DUF957 domain-containing protein;protein_id=WP_000839282.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 11305 12147 . + . ID=gene-AD39_RS18050;Name=AD39_RS18050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS18050;old_locus_tag=AD39_1127 NZ_JJLH01000015.1 Protein Homology CDS 11305 12147 . + 0 ID=cds-WP_001280481.1;Parent=gene-AD39_RS18050;Dbxref=GenBank:WP_001280481.1;Name=WP_001280481.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309436.1;locus_tag=AD39_RS18050;product=DUF4942 domain-containing protein;protein_id=WP_001280481.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 12297 12384 . - . ID=gene-AD39_RS18045;Name=AD39_RS18045;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS18045;old_locus_tag=AD39_1128 NZ_JJLH01000015.1 tRNAscan-SE tRNA 12297 12384 . - . ID=rna-AD39_RS18045;Parent=gene-AD39_RS18045;anticodon=(pos:complement(12348..12350));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS18045;product=tRNA-Ser NZ_JJLH01000015.1 tRNAscan-SE exon 12297 12384 . - . ID=exon-AD39_RS18045-1;Parent=rna-AD39_RS18045;anticodon=(pos:complement(12348..12350));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS18045;product=tRNA-Ser NZ_JJLH01000015.1 RefSeq gene 12618 13556 . + . ID=gene-AD39_RS18040;Name=ghrA;gbkey=Gene;gene=ghrA;gene_biotype=protein_coding;locus_tag=AD39_RS18040;old_locus_tag=AD39_1129 NZ_JJLH01000015.1 Protein Homology CDS 12618 13556 . + 0 ID=cds-WP_000351317.1;Parent=gene-AD39_RS18040;Dbxref=GenBank:WP_000351317.1;Name=WP_000351317.1;Ontology_term=GO:0016618,GO:0030267,GO:0051287;gbkey=CDS;gene=ghrA;go_function=hydroxypyruvate reductase [NAD(P)H] activity|0016618||IEA,glyoxylate reductase (NADPH) activity|0030267||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415551.2;locus_tag=AD39_RS18040;product=glyoxylate/hydroxypyruvate reductase GhrA;protein_id=WP_000351317.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 13611 14348 . + . ID=gene-AD39_RS18035;Name=ycdX;gbkey=Gene;gene=ycdX;gene_biotype=protein_coding;locus_tag=AD39_RS18035;old_locus_tag=AD39_1130 NZ_JJLH01000015.1 Protein Homology CDS 13611 14348 . + 0 ID=cds-WP_000283664.1;Parent=gene-AD39_RS18035;Dbxref=GenBank:WP_000283664.1;Name=WP_000283664.1;gbkey=CDS;gene=ycdX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309438.1;locus_tag=AD39_RS18035;product=zinc-binding phosphatase;protein_id=WP_000283664.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 14372 14926 . + . ID=gene-AD39_RS18030;Name=ycdY;gbkey=Gene;gene=ycdY;gene_biotype=protein_coding;locus_tag=AD39_RS18030;old_locus_tag=AD39_1131 NZ_JJLH01000015.1 Protein Homology CDS 14372 14926 . + 0 ID=cds-WP_001001902.1;Parent=gene-AD39_RS18030;Dbxref=GenBank:WP_001001902.1;Name=WP_001001902.1;gbkey=CDS;gene=ycdY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309439.1;locus_tag=AD39_RS18030;product=molecular chaperone YcdY;protein_id=WP_001001902.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 15028 15519 . + . ID=gene-AD39_RS18025;Name=ycdZ;gbkey=Gene;gene=ycdZ;gene_biotype=protein_coding;locus_tag=AD39_RS18025;old_locus_tag=AD39_1132 NZ_JJLH01000015.1 Protein Homology CDS 15028 15519 . + 0 ID=cds-WP_001297187.1;Parent=gene-AD39_RS18025;Dbxref=GenBank:WP_001297187.1;Name=WP_001297187.1;Ontology_term=GO:0005886;gbkey=CDS;gene=ycdZ;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415554.4;locus_tag=AD39_RS18025;product=DUF1097 domain-containing protein;protein_id=WP_001297187.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 15583 16416 . - . ID=gene-AD39_RS18020;Name=csgG;gbkey=Gene;gene=csgG;gene_biotype=protein_coding;locus_tag=AD39_RS18020;old_locus_tag=AD39_1133 NZ_JJLH01000015.1 Protein Homology CDS 15583 16416 . - 0 ID=cds-WP_001189321.1;Parent=gene-AD39_RS18020;Dbxref=GenBank:WP_001189321.1;Name=WP_001189321.1;gbkey=CDS;gene=csgG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309441.1;locus_tag=AD39_RS18020;product=curli production assembly/transport protein CsgG;protein_id=WP_001189321.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 16443 16859 . - . ID=gene-AD39_RS18015;Name=csgF;gbkey=Gene;gene=csgF;gene_biotype=protein_coding;locus_tag=AD39_RS18015;old_locus_tag=AD39_1134 NZ_JJLH01000015.1 Protein Homology CDS 16443 16859 . - 0 ID=cds-WP_001264088.1;Parent=gene-AD39_RS18015;Dbxref=GenBank:WP_001264088.1;Name=WP_001264088.1;gbkey=CDS;gene=csgF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309442.1;locus_tag=AD39_RS18015;product=curli production assembly/transport protein CsgF;protein_id=WP_001264088.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 16884 17273 . - . ID=gene-AD39_RS18010;Name=csgE;gbkey=Gene;gene=csgE;gene_biotype=protein_coding;locus_tag=AD39_RS18010;old_locus_tag=AD39_1135 NZ_JJLH01000015.1 Protein Homology CDS 16884 17273 . - 0 ID=cds-WP_000833288.1;Parent=gene-AD39_RS18010;Dbxref=GenBank:WP_000833288.1;Name=WP_000833288.1;gbkey=CDS;gene=csgE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309443.1;locus_tag=AD39_RS18010;product=curli production assembly/transport protein CsgE;protein_id=WP_000833288.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 17278 17928 . - . ID=gene-AD39_RS18005;Name=csgD;gbkey=Gene;gene=csgD;gene_biotype=protein_coding;locus_tag=AD39_RS18005;old_locus_tag=AD39_1136 NZ_JJLH01000015.1 Protein Homology CDS 17278 17928 . - 0 ID=cds-WP_000481500.1;Parent=gene-AD39_RS18005;Dbxref=GenBank:WP_000481500.1;Name=WP_000481500.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=csgD;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309444.1;locus_tag=AD39_RS18005;product=biofilm master transcriptional regulator CsgD;protein_id=WP_000481500.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 18682 19137 . + . ID=gene-AD39_RS18000;Name=csgB;gbkey=Gene;gene=csgB;gene_biotype=protein_coding;locus_tag=AD39_RS18000;old_locus_tag=AD39_1139 NZ_JJLH01000015.1 Protein Homology CDS 18682 19137 . + 0 ID=cds-WP_000791650.1;Parent=gene-AD39_RS18000;Dbxref=GenBank:WP_000791650.1;Name=WP_000791650.1;gbkey=CDS;gene=csgB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309446.1;locus_tag=AD39_RS18000;product=curli minor subunit CsgB;protein_id=WP_000791650.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 19178 19633 . + . ID=gene-AD39_RS17995;Name=csgA;gbkey=Gene;gene=csgA;gene_biotype=protein_coding;locus_tag=AD39_RS17995;old_locus_tag=AD39_1140 NZ_JJLH01000015.1 Protein Homology CDS 19178 19633 . + 0 ID=cds-WP_000771437.1;Parent=gene-AD39_RS17995;Dbxref=GenBank:WP_000771437.1;Name=WP_000771437.1;gbkey=CDS;gene=csgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415560.1;locus_tag=AD39_RS17995;product=curli major subunit CsgA;protein_id=WP_000771437.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 19692 20024 . + . ID=gene-AD39_RS17990;Name=csgC;gbkey=Gene;gene=csgC;gene_biotype=protein_coding;locus_tag=AD39_RS17990;old_locus_tag=AD39_1141 NZ_JJLH01000015.1 Protein Homology CDS 19692 20024 . + 0 ID=cds-WP_000992834.1;Parent=gene-AD39_RS17990;Dbxref=GenBank:WP_000992834.1;Name=WP_000992834.1;gbkey=CDS;gene=csgC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309448.1;locus_tag=AD39_RS17990;product=curli assembly chaperone CsgC;protein_id=WP_000992834.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 20145 20456 . + . ID=gene-AD39_RS17985;Name=ymdA;gbkey=Gene;gene=ymdA;gene_biotype=protein_coding;locus_tag=AD39_RS17985;old_locus_tag=AD39_1142 NZ_JJLH01000015.1 Protein Homology CDS 20145 20456 . + 0 ID=cds-WP_000489590.1;Parent=gene-AD39_RS17985;Dbxref=GenBank:WP_000489590.1;Name=WP_000489590.1;gbkey=CDS;gene=ymdA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309449.1;locus_tag=AD39_RS17985;product=protein YmdA;protein_id=WP_000489590.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 20551 21084 . + . ID=gene-AD39_RS17980;Name=ymdB;gbkey=Gene;gene=ymdB;gene_biotype=protein_coding;locus_tag=AD39_RS17980;old_locus_tag=AD39_1143 NZ_JJLH01000015.1 Protein Homology CDS 20551 21084 . + 0 ID=cds-WP_000857399.1;Parent=gene-AD39_RS17980;Dbxref=GenBank:WP_000857399.1;Name=WP_000857399.1;Ontology_term=GO:0003824;gbkey=CDS;gene=ymdB;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309450.1;locus_tag=AD39_RS17980;product=O-acetyl-ADP-ribose deacetylase;protein_id=WP_000857399.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 21026 22507 . + . ID=gene-AD39_RS17975;Name=clsC;gbkey=Gene;gene=clsC;gene_biotype=protein_coding;locus_tag=AD39_RS17975;old_locus_tag=AD39_1144 NZ_JJLH01000015.1 Protein Homology CDS 21026 22507 . + 0 ID=cds-WP_001307714.1;Parent=gene-AD39_RS17975;Dbxref=GenBank:WP_001307714.1;Name=WP_001307714.1;gbkey=CDS;gene=clsC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706957.2;locus_tag=AD39_RS17975;product=cardiolipin synthase ClsC;protein_id=WP_001307714.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 22515 23672 . - . ID=gene-AD39_RS17970;Name=mdoC;gbkey=Gene;gene=mdoC;gene_biotype=protein_coding;locus_tag=AD39_RS17970;old_locus_tag=AD39_1145 NZ_JJLH01000015.1 Protein Homology CDS 22515 23672 . - 0 ID=cds-WP_001070350.1;Parent=gene-AD39_RS17970;Dbxref=GenBank:WP_001070350.1;Name=WP_001070350.1;Ontology_term=GO:0016740;gbkey=CDS;gene=mdoC;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706958.2;locus_tag=AD39_RS17970;product=glucans biosynthesis protein MdoC;protein_id=WP_001070350.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 24066 25601 . + . ID=gene-AD39_RS17955;Name=mdoG;gbkey=Gene;gene=mdoG;gene_biotype=protein_coding;locus_tag=AD39_RS17955;old_locus_tag=AD39_1148 NZ_JJLH01000015.1 Protein Homology CDS 24066 25601 . + 0 ID=cds-WP_001300662.1;Parent=gene-AD39_RS17955;Dbxref=GenBank:WP_001300662.1;Name=WP_001300662.1;gbkey=CDS;gene=mdoG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415566.1;locus_tag=AD39_RS17955;product=glucans biosynthesis protein MdoG;protein_id=WP_001300662.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 25594 28137 . + . ID=gene-AD39_RS17950;Name=mdoH;gbkey=Gene;gene=mdoH;gene_biotype=protein_coding;locus_tag=AD39_RS17950;old_locus_tag=AD39_1149 NZ_JJLH01000015.1 Protein Homology CDS 25594 28137 . + 0 ID=cds-WP_001295445.1;Parent=gene-AD39_RS17950;Dbxref=GenBank:WP_001295445.1;Name=WP_001295445.1;Ontology_term=GO:0016758;gbkey=CDS;gene=mdoH;go_function=hexosyltransferase activity|0016758||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415567.1;locus_tag=AD39_RS17950;product=glucans biosynthesis glucosyltransferase MdoH;protein_id=WP_001295445.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 28310 28537 . + . ID=gene-AD39_RS17945;Name=yceK;gbkey=Gene;gene=yceK;gene_biotype=protein_coding;locus_tag=AD39_RS17945;old_locus_tag=AD39_1150 NZ_JJLH01000015.1 Protein Homology CDS 28310 28537 . + 0 ID=cds-WP_001237206.1;Parent=gene-AD39_RS17945;Dbxref=GenBank:WP_001237206.1;Name=WP_001237206.1;gbkey=CDS;gene=yceK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309455.1;locus_tag=AD39_RS17945;product=YceK/YidQ family lipoprotein;protein_id=WP_001237206.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 28538 28912 . - . ID=gene-AD39_RS17940;Name=msyB;gbkey=Gene;gene=msyB;gene_biotype=protein_coding;locus_tag=AD39_RS17940;old_locus_tag=AD39_1151 NZ_JJLH01000015.1 Protein Homology CDS 28538 28912 . - 0 ID=cds-WP_000180056.1;Parent=gene-AD39_RS17940;Dbxref=GenBank:WP_000180056.1;Name=WP_000180056.1;gbkey=CDS;gene=msyB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309456.2;locus_tag=AD39_RS17940;product=MysB family protein;protein_id=WP_000180056.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 28995 30221 . - . ID=gene-AD39_RS17935;Name=mdtG;gbkey=Gene;gene=mdtG;gene_biotype=protein_coding;locus_tag=AD39_RS17935;old_locus_tag=AD39_1152 NZ_JJLH01000015.1 Protein Homology CDS 28995 30221 . - 0 ID=cds-WP_000074172.1;Parent=gene-AD39_RS17935;Dbxref=GenBank:WP_000074172.1;Name=WP_000074172.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=mdtG;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415571.1;locus_tag=AD39_RS17935;product=multidrug efflux MFS transporter MdtG;protein_id=WP_000074172.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 30393 31313 . - . ID=gene-AD39_RS17930;Name=lpxL;gbkey=Gene;gene=lpxL;gene_biotype=protein_coding;locus_tag=AD39_RS17930;old_locus_tag=AD39_1153 NZ_JJLH01000015.1 Protein Homology CDS 30393 31313 . - 0 ID=cds-WP_000183364.1;Parent=gene-AD39_RS17930;Dbxref=GenBank:WP_000183364.1;Name=WP_000183364.1;gbkey=CDS;gene=lpxL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309459.1;locus_tag=AD39_RS17930;product=kdo(2)-lipid IV(A) lauroyltransferase;protein_id=WP_000183364.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 31538 32590 . + . ID=gene-AD39_RS17925;Name=trhO;gbkey=Gene;gene=trhO;gene_biotype=protein_coding;locus_tag=AD39_RS17925;old_locus_tag=AD39_1154 NZ_JJLH01000015.1 Protein Homology CDS 31538 32590 . + 0 ID=cds-WP_001144616.1;Parent=gene-AD39_RS17925;Dbxref=GenBank:WP_001144616.1;Name=WP_001144616.1;gbkey=CDS;gene=trhO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706977.2;locus_tag=AD39_RS17925;product=rhodanese-related sulfurtransferase;protein_id=WP_001144616.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 32632 33207 . - . ID=gene-AD39_RS17920;Name=yceI;gbkey=Gene;gene=yceI;gene_biotype=protein_coding;locus_tag=AD39_RS17920;old_locus_tag=AD39_1155 NZ_JJLH01000015.1 Protein Homology CDS 32632 33207 . - 0 ID=cds-WP_000749261.1;Parent=gene-AD39_RS17920;Dbxref=GenBank:WP_000749261.1;Name=WP_000749261.1;gbkey=CDS;gene=yceI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309461.1;locus_tag=AD39_RS17920;product=YceI family protein;protein_id=WP_000749261.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 33211 33777 . - . ID=gene-AD39_RS17915;Name=yceJ;gbkey=Gene;gene=yceJ;gene_biotype=protein_coding;locus_tag=AD39_RS17915;old_locus_tag=AD39_1156 NZ_JJLH01000015.1 Protein Homology CDS 33211 33777 . - 0 ID=cds-WP_000011108.1;Parent=gene-AD39_RS17915;Dbxref=GenBank:WP_000011108.1;Name=WP_000011108.1;Ontology_term=GO:0022904,GO:0009055,GO:0020037,GO:0046872,GO:0016020;gbkey=CDS;gene=yceJ;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309462.1;locus_tag=AD39_RS17915;product=cytochrome b;protein_id=WP_000011108.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 34038 34151 . - . ID=gene-AD39_RS17910;Name=AD39_RS17910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17910;old_locus_tag=AD39_1158 NZ_JJLH01000015.1 Protein Homology CDS 34038 34151 . - 0 ID=cds-WP_001253418.1;Parent=gene-AD39_RS17910;Dbxref=GenBank:WP_001253418.1;Name=WP_001253418.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706980.2;locus_tag=AD39_RS17910;product=YceO family protein;protein_id=WP_001253418.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 34199 35317 . - . ID=gene-AD39_RS17905;Name=solA;gbkey=Gene;gene=solA;gene_biotype=protein_coding;locus_tag=AD39_RS17905;old_locus_tag=AD39_1159 NZ_JJLH01000015.1 Protein Homology CDS 34199 35317 . - 0 ID=cds-WP_000872809.1;Parent=gene-AD39_RS17905;Dbxref=GenBank:WP_000872809.1;Name=WP_000872809.1;Ontology_term=GO:0050131;gbkey=CDS;gene=solA;go_function=N-methyl-L-amino-acid oxidase activity|0050131||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309464.1;locus_tag=AD39_RS17905;product=N-methyl-L-tryptophan oxidase;protein_id=WP_000872809.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 35432 35686 . - . ID=gene-AD39_RS17900;Name=bssS;gbkey=Gene;gene=bssS;gene_biotype=protein_coding;locus_tag=AD39_RS17900;old_locus_tag=AD39_1160 NZ_JJLH01000015.1 Protein Homology CDS 35432 35686 . - 0 ID=cds-WP_000414437.1;Parent=gene-AD39_RS17900;Dbxref=GenBank:WP_000414437.1;Name=WP_000414437.1;gbkey=CDS;gene=bssS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309465.3;locus_tag=AD39_RS17900;product=biofilm formation regulator BssS;protein_id=WP_000414437.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 35976 36221 . - . ID=gene-AD39_RS17895;Name=dinI;gbkey=Gene;gene=dinI;gene_biotype=protein_coding;locus_tag=AD39_RS17895;old_locus_tag=AD39_1161 NZ_JJLH01000015.1 Protein Homology CDS 35976 36221 . - 0 ID=cds-WP_001217754.1;Parent=gene-AD39_RS17895;Dbxref=GenBank:WP_001217754.1;Name=WP_001217754.1;gbkey=CDS;gene=dinI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309466.1;locus_tag=AD39_RS17895;product=DNA damage-inducible protein I;protein_id=WP_001217754.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 36295 37341 . - . ID=gene-AD39_RS17890;Name=pyrC;gbkey=Gene;gene=pyrC;gene_biotype=protein_coding;locus_tag=AD39_RS17890;old_locus_tag=AD39_1162 NZ_JJLH01000015.1 Protein Homology CDS 36295 37341 . - 0 ID=cds-WP_000126534.1;Parent=gene-AD39_RS17890;Dbxref=GenBank:WP_000126534.1;Name=WP_000126534.1;Ontology_term=GO:0019856,GO:0004151;gbkey=CDS;gene=pyrC;go_function=dihydroorotase activity|0004151||IEA;go_process=pyrimidine nucleobase biosynthetic process|0019856||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415580.1;locus_tag=AD39_RS17890;product=dihydroorotase;protein_id=WP_000126534.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 37447 38007 . - . ID=gene-AD39_RS17885;Name=yceB;gbkey=Gene;gene=yceB;gene_biotype=protein_coding;locus_tag=AD39_RS17885;old_locus_tag=AD39_1163 NZ_JJLH01000015.1 Protein Homology CDS 37447 38007 . - 0 ID=cds-WP_001295443.1;Parent=gene-AD39_RS17885;Dbxref=GenBank:WP_001295443.1;Name=WP_001295443.1;gbkey=CDS;gene=yceB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415581.1;locus_tag=AD39_RS17885;product=lipoprotein;protein_id=WP_001295443.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 38141 38788 . - . ID=gene-AD39_RS17880;Name=grxB;gbkey=Gene;gene=grxB;gene_biotype=protein_coding;locus_tag=AD39_RS17880;old_locus_tag=AD39_1164 NZ_JJLH01000015.1 Protein Homology CDS 38141 38788 . - 0 ID=cds-WP_001468576.1;Parent=gene-AD39_RS17880;Dbxref=GenBank:WP_001468576.1;Name=WP_001468576.1;Ontology_term=GO:0006749,GO:0004362,GO:0005515;gbkey=CDS;gene=grxB;go_function=glutathione-disulfide reductase (NADPH) activity|0004362||IEA,protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309469.1;locus_tag=AD39_RS17880;product=glutaredoxin 2;protein_id=WP_001468576.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 38852 40060 . - . ID=gene-AD39_RS17875;Name=mdtH;gbkey=Gene;gene=mdtH;gene_biotype=protein_coding;locus_tag=AD39_RS17875;old_locus_tag=AD39_1165 NZ_JJLH01000015.1 Protein Homology CDS 38852 40060 . - 0 ID=cds-WP_000092206.1;Parent=gene-AD39_RS17875;Dbxref=GenBank:WP_000092206.1;Name=WP_000092206.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=mdtH;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415583.4;locus_tag=AD39_RS17875;product=multidrug efflux MFS transporter MdtH;protein_id=WP_000092206.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 40296 40880 . + . ID=gene-AD39_RS17870;Name=rimJ;gbkey=Gene;gene=rimJ;gene_biotype=protein_coding;locus_tag=AD39_RS17870;old_locus_tag=AD39_1166 NZ_JJLH01000015.1 Protein Homology CDS 40296 40880 . + 0 ID=cds-WP_032283144.1;Parent=gene-AD39_RS17870;Dbxref=GenBank:WP_032283144.1;Name=WP_032283144.1;Ontology_term=GO:0008080;gbkey=CDS;gene=rimJ;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309471.1;locus_tag=AD39_RS17870;product=ribosomal protein S5-alanine N-acetyltransferase;protein_id=WP_032283144.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 40891 41538 . + . ID=gene-AD39_RS17865;Name=yceH;gbkey=Gene;gene=yceH;gene_biotype=protein_coding;locus_tag=AD39_RS17865;old_locus_tag=AD39_1167 NZ_JJLH01000015.1 Protein Homology CDS 40891 41538 . + 0 ID=cds-WP_032283146.1;Parent=gene-AD39_RS17865;Dbxref=GenBank:WP_032283146.1;Name=WP_032283146.1;gbkey=CDS;gene=yceH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309472.1;locus_tag=AD39_RS17865;product=YceH family protein;protein_id=WP_032283146.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 41540 42463 . + . ID=gene-AD39_RS17860;Name=yceM;gbkey=Gene;gene=yceM;gene_biotype=protein_coding;locus_tag=AD39_RS17860;old_locus_tag=AD39_1168 NZ_JJLH01000015.1 Protein Homology CDS 41540 42463 . + 0 ID=cds-WP_000736125.1;Parent=gene-AD39_RS17860;Dbxref=GenBank:WP_000736125.1;Name=WP_000736125.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;gene=yceM;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415586.1;locus_tag=AD39_RS17860;product=Gfo/Idh/MocA family protein;protein_id=WP_000736125.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 42573 44108 . + . ID=gene-AD39_RS17855;Name=murJ;gbkey=Gene;gene=murJ;gene_biotype=protein_coding;locus_tag=AD39_RS17855;old_locus_tag=AD39_1169 NZ_JJLH01000015.1 Protein Homology CDS 42573 44108 . + 0 ID=cds-WP_001050672.1;Parent=gene-AD39_RS17855;Dbxref=GenBank:WP_001050672.1;Name=WP_001050672.1;Ontology_term=GO:0009252,GO:0034204;gbkey=CDS;gene=murJ;go_process=peptidoglycan biosynthetic process|0009252||IEA,lipid translocation|0034204||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706990.2;locus_tag=AD39_RS17855;product=murein biosynthesis integral membrane protein MurJ;protein_id=WP_001050672.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 44148 44564 . - . ID=gene-AD39_RS17850;Name=flgN;gbkey=Gene;gene=flgN;gene_biotype=protein_coding;locus_tag=AD39_RS17850;old_locus_tag=AD39_1170 NZ_JJLH01000015.1 Protein Homology CDS 44148 44564 . - 0 ID=cds-WP_000197340.1;Parent=gene-AD39_RS17850;Dbxref=GenBank:WP_000197340.1;Name=WP_000197340.1;gbkey=CDS;gene=flgN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415588.1;locus_tag=AD39_RS17850;product=flagella biosynthesis chaperone FlgN;protein_id=WP_000197340.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 44569 44862 . - . ID=gene-AD39_RS17845;Name=flgM;gbkey=Gene;gene=flgM;gene_biotype=protein_coding;locus_tag=AD39_RS17845;old_locus_tag=AD39_1171 NZ_JJLH01000015.1 Protein Homology CDS 44569 44862 . - 0 ID=cds-WP_000020880.1;Parent=gene-AD39_RS17845;Dbxref=GenBank:WP_000020880.1;Name=WP_000020880.1;Ontology_term=GO:0045892;gbkey=CDS;gene=flgM;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415589.1;locus_tag=AD39_RS17845;product=flagellar biosynthesis anti-sigma factor FlgM;protein_id=WP_000020880.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 44938 45597 . - . ID=gene-AD39_RS17840;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=AD39_RS17840;old_locus_tag=AD39_1172 NZ_JJLH01000015.1 Protein Homology CDS 44938 45597 . - 0 ID=cds-WP_032283147.1;Parent=gene-AD39_RS17840;Dbxref=GenBank:WP_032283147.1;Name=WP_032283147.1;Ontology_term=GO:0001539,GO:0005198,GO:0009428;gbkey=CDS;gene=flgA;go_component=bacterial-type flagellum basal body%2C distal rod%2C P ring|0009428||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415590.1;locus_tag=AD39_RS17840;product=flagellar basal body P-ring formation chaperone FlgA;protein_id=WP_032283147.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 45753 46169 . + . ID=gene-AD39_RS17835;Name=flgB;gbkey=Gene;gene=flgB;gene_biotype=protein_coding;locus_tag=AD39_RS17835;old_locus_tag=AD39_1174 NZ_JJLH01000015.1 Protein Homology CDS 45753 46169 . + 0 ID=cds-WP_000884702.1;Parent=gene-AD39_RS17835;Dbxref=GenBank:WP_000884702.1;Name=WP_000884702.1;Ontology_term=GO:0071973,GO:0030694;gbkey=CDS;gene=flgB;go_component=bacterial-type flagellum basal body%2C rod|0030694||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415591.1;locus_tag=AD39_RS17835;product=flagellar basal body rod protein FlgB;protein_id=WP_000884702.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 46173 46577 . + . ID=gene-AD39_RS17830;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=protein_coding;locus_tag=AD39_RS17830;old_locus_tag=AD39_1175 NZ_JJLH01000015.1 Protein Homology CDS 46173 46577 . + 0 ID=cds-WP_001196460.1;Parent=gene-AD39_RS17830;Dbxref=GenBank:WP_001196460.1;Name=WP_001196460.1;Ontology_term=GO:0071973,GO:0030694;gbkey=CDS;gene=flgC;go_component=bacterial-type flagellum basal body%2C rod|0030694||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001740734.1;locus_tag=AD39_RS17830;product=flagellar basal body rod protein FlgC;protein_id=WP_001196460.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 46589 47284 . + . ID=gene-AD39_RS17825;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;locus_tag=AD39_RS17825;old_locus_tag=AD39_1176 NZ_JJLH01000015.1 Protein Homology CDS 46589 47284 . + 0 ID=cds-WP_000020484.1;Parent=gene-AD39_RS17825;Dbxref=GenBank:WP_000020484.1;Name=WP_000020484.1;gbkey=CDS;gene=flgD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309480.1;locus_tag=AD39_RS17825;product=flagellar hook assembly protein FlgD;protein_id=WP_000020484.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 47309 48517 . + . ID=gene-AD39_RS17820;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=AD39_RS17820;old_locus_tag=AD39_1177 NZ_JJLH01000015.1 Protein Homology CDS 47309 48517 . + 0 ID=cds-WP_032283148.1;Parent=gene-AD39_RS17820;Dbxref=GenBank:WP_032283148.1;Name=WP_032283148.1;gbkey=CDS;gene=flgE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415594.1;locus_tag=AD39_RS17820;product=flagellar hook protein FlgE;protein_id=WP_032283148.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 48537 49292 . + . ID=gene-AD39_RS17815;Name=flgF;gbkey=Gene;gene=flgF;gene_biotype=protein_coding;locus_tag=AD39_RS17815;old_locus_tag=AD39_1178 NZ_JJLH01000015.1 Protein Homology CDS 48537 49292 . + 0 ID=cds-WP_000349316.1;Parent=gene-AD39_RS17815;Dbxref=GenBank:WP_000349316.1;Name=WP_000349316.1;gbkey=CDS;gene=flgF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415595.1;locus_tag=AD39_RS17815;product=flagellar basal-body rod protein FlgF;protein_id=WP_000349316.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 49464 50246 . + . ID=gene-AD39_RS17810;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=AD39_RS17810;old_locus_tag=AD39_1179 NZ_JJLH01000015.1 Protein Homology CDS 49464 50246 . + 0 ID=cds-WP_000625837.1;Parent=gene-AD39_RS17810;Dbxref=GenBank:WP_000625837.1;Name=WP_000625837.1;Ontology_term=GO:0071973,GO:0009426;gbkey=CDS;gene=flgG;go_component=bacterial-type flagellum basal body%2C distal rod|0009426||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006819466.1;locus_tag=AD39_RS17810;product=flagellar basal-body rod protein FlgG;protein_id=WP_000625837.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 50299 50997 . + . ID=gene-AD39_RS17805;Name=flgH;gbkey=Gene;gene=flgH;gene_biotype=protein_coding;locus_tag=AD39_RS17805;old_locus_tag=AD39_1180 NZ_JJLH01000015.1 Protein Homology CDS 50299 50997 . + 0 ID=cds-WP_032283149.1;Parent=gene-AD39_RS17805;Dbxref=GenBank:WP_032283149.1;Name=WP_032283149.1;Ontology_term=GO:0071973,GO:0003774,GO:0009427;gbkey=CDS;gene=flgH;go_component=bacterial-type flagellum basal body%2C distal rod%2C L ring|0009427||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309484.1;locus_tag=AD39_RS17805;product=flagellar basal body L-ring protein FlgH;protein_id=WP_032283149.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 51009 52106 . + . ID=gene-AD39_RS17800;Name=flgI;gbkey=Gene;gene=flgI;gene_biotype=protein_coding;locus_tag=AD39_RS17800;old_locus_tag=AD39_1181 NZ_JJLH01000015.1 Protein Homology CDS 51009 52106 . + 0 ID=cds-WP_000589326.1;Parent=gene-AD39_RS17800;Dbxref=GenBank:WP_000589326.1;Name=WP_000589326.1;gbkey=CDS;gene=flgI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415598.3;locus_tag=AD39_RS17800;product=flagellar basal body P-ring protein FlgI;protein_id=WP_000589326.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 52106 53047 . + . ID=gene-AD39_RS17795;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=AD39_RS17795;old_locus_tag=AD39_1182 NZ_JJLH01000015.1 Protein Homology CDS 52106 53047 . + 0 ID=cds-WP_001295441.1;Parent=gene-AD39_RS17795;Dbxref=GenBank:WP_001295441.1;Name=WP_001295441.1;Ontology_term=GO:0044780,GO:0016798;gbkey=CDS;gene=flgJ;go_function=hydrolase activity%2C acting on glycosyl bonds|0016798||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415599.1;locus_tag=AD39_RS17795;product=flagellar assembly peptidoglycan hydrolase FlgJ;protein_id=WP_001295441.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 53113 54756 . + . ID=gene-AD39_RS17790;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=protein_coding;locus_tag=AD39_RS17790;old_locus_tag=AD39_1183 NZ_JJLH01000015.1 Protein Homology CDS 53113 54756 . + 0 ID=cds-WP_032283151.1;Parent=gene-AD39_RS17790;Dbxref=GenBank:WP_032283151.1;Name=WP_032283151.1;Ontology_term=GO:0044780,GO:0005198,GO:0009424;gbkey=CDS;gene=flgK;go_component=bacterial-type flagellum hook|0009424||IEA;go_function=structural molecule activity|0005198||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415600.1;locus_tag=AD39_RS17790;product=flagellar hook-associated protein FlgK;protein_id=WP_032283151.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 54768 55721 . + . ID=gene-AD39_RS17785;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=AD39_RS17785;old_locus_tag=AD39_1184 NZ_JJLH01000015.1 Protein Homology CDS 54768 55721 . + 0 ID=cds-WP_001212781.1;Parent=gene-AD39_RS17785;Dbxref=GenBank:WP_001212781.1;Name=WP_001212781.1;Ontology_term=GO:0001539,GO:0005198,GO:0009424;gbkey=CDS;gene=flgL;go_component=bacterial-type flagellum hook|0009424||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415601.1;locus_tag=AD39_RS17785;product=flagellar hook-associated protein FlgL;protein_id=WP_001212781.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 55917 59102 . - . ID=gene-AD39_RS17780;Name=rne;gbkey=Gene;gene=rne;gene_biotype=protein_coding;locus_tag=AD39_RS17780;old_locus_tag=AD39_1185 NZ_JJLH01000015.1 Protein Homology CDS 55917 59102 . - 0 ID=cds-WP_032287521.1;Parent=gene-AD39_RS17780;Dbxref=GenBank:WP_032287521.1;Name=WP_032287521.1;Ontology_term=GO:0006396,GO:0003723,GO:0008995;gbkey=CDS;gene=rne;go_function=RNA binding|0003723||IEA,ribonuclease E activity|0008995||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415602.1;locus_tag=AD39_RS17780;product=ribonuclease E;protein_id=WP_032287521.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 59675 60634 . + . ID=gene-AD39_RS17775;Name=rluC;gbkey=Gene;gene=rluC;gene_biotype=protein_coding;locus_tag=AD39_RS17775;old_locus_tag=AD39_1186 NZ_JJLH01000015.1 Protein Homology CDS 59675 60634 . + 0 ID=cds-WP_000846343.1;Parent=gene-AD39_RS17775;Dbxref=GenBank:WP_000846343.1;Name=WP_000846343.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=rluC;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415604.1;locus_tag=AD39_RS17775;product=23S rRNA pseudouridine(955/2504/2580) synthase RluC;protein_id=WP_000846343.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 60746 61330 . - . ID=gene-AD39_RS17770;Name=yceF;gbkey=Gene;gene=yceF;gene_biotype=protein_coding;locus_tag=AD39_RS17770;old_locus_tag=AD39_1188 NZ_JJLH01000015.1 Protein Homology CDS 60746 61330 . - 0 ID=cds-WP_001125202.1;Parent=gene-AD39_RS17770;Dbxref=GenBank:WP_001125202.1;Name=WP_001125202.1;gbkey=CDS;gene=yceF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415605.2;locus_tag=AD39_RS17770;product=7-methyl-GTP pyrophosphatase;protein_id=WP_001125202.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 61529 62050 . + . ID=gene-AD39_RS17765;Name=yceD;gbkey=Gene;gene=yceD;gene_biotype=protein_coding;locus_tag=AD39_RS17765;old_locus_tag=AD39_1189 NZ_JJLH01000015.1 Protein Homology CDS 61529 62050 . + 0 ID=cds-WP_001174481.1;Parent=gene-AD39_RS17765;Dbxref=GenBank:WP_001174481.1;Name=WP_001174481.1;gbkey=CDS;gene=yceD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001174481.1;locus_tag=AD39_RS17765;product=23S rRNA accumulation protein YceD;protein_id=WP_001174481.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 62102 62275 . + . ID=gene-AD39_RS17760;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=AD39_RS17760;old_locus_tag=AD39_1190 NZ_JJLH01000015.1 Protein Homology CDS 62102 62275 . + 0 ID=cds-WP_000290727.1;Parent=gene-AD39_RS17760;Dbxref=GenBank:WP_000290727.1;Name=WP_000290727.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rpmF;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005125993.1;locus_tag=AD39_RS17760;product=50S ribosomal protein L32;protein_id=WP_000290727.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 62356 63426 . + . ID=gene-AD39_RS17755;Name=plsX;gbkey=Gene;gene=plsX;gene_biotype=protein_coding;locus_tag=AD39_RS17755;old_locus_tag=AD39_1191 NZ_JJLH01000015.1 Protein Homology CDS 62356 63426 . + 0 ID=cds-WP_000197568.1;Parent=gene-AD39_RS17755;Dbxref=GenBank:WP_000197568.1;Name=WP_000197568.1;Ontology_term=GO:0008610,GO:0043811;gbkey=CDS;gene=plsX;go_function=phosphate:acyl-[acyl carrier protein] acyltransferase activity|0043811||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415608.2;locus_tag=AD39_RS17755;product=phosphate acyltransferase PlsX;protein_id=WP_000197568.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 63494 64447 . + . ID=gene-AD39_RS17750;Name=fabH;gbkey=Gene;gene=fabH;gene_biotype=protein_coding;locus_tag=AD39_RS17750;old_locus_tag=AD39_1192 NZ_JJLH01000015.1 Protein Homology CDS 63494 64447 . + 0 ID=cds-WP_000288132.1;Parent=gene-AD39_RS17750;Dbxref=GenBank:WP_000288132.1;Name=WP_000288132.1;gbkey=CDS;gene=fabH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129019.1;locus_tag=AD39_RS17750;product=beta-ketoacyl-ACP synthase III;protein_id=WP_000288132.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 64463 65392 . + . ID=gene-AD39_RS17745;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;locus_tag=AD39_RS17745;old_locus_tag=AD39_1193 NZ_JJLH01000015.1 Protein Homology CDS 64463 65392 . + 0 ID=cds-WP_000191372.1;Parent=gene-AD39_RS17745;Dbxref=GenBank:WP_000191372.1;Name=WP_000191372.1;Ontology_term=GO:0006633,GO:0004314;gbkey=CDS;gene=fabD;go_function=[acyl-carrier-protein] S-malonyltransferase activity|0004314||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415610.1;locus_tag=AD39_RS17745;product=ACP S-malonyltransferase;protein_id=WP_000191372.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 65405 66139 . + . ID=gene-AD39_RS17740;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=AD39_RS17740;old_locus_tag=AD39_1194 NZ_JJLH01000015.1 Protein Homology CDS 65405 66139 . + 0 ID=cds-WP_001008535.1;Parent=gene-AD39_RS17740;Dbxref=GenBank:WP_001008535.1;Name=WP_001008535.1;Ontology_term=GO:0006633,GO:0004316,GO:0051287;gbkey=CDS;gene=fabG;go_function=3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|0004316||IEA,NAD binding|0051287||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129017.1;locus_tag=AD39_RS17740;product=3-oxoacyl-ACP reductase FabG;protein_id=WP_001008535.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 66350 66586 . + . ID=gene-AD39_RS17735;Name=acpP;gbkey=Gene;gene=acpP;gene_biotype=protein_coding;locus_tag=AD39_RS17735;old_locus_tag=AD39_1195 NZ_JJLH01000015.1 Protein Homology CDS 66350 66586 . + 0 ID=cds-WP_000103754.1;Parent=gene-AD39_RS17735;Dbxref=GenBank:WP_000103754.1;Name=WP_000103754.1;Ontology_term=GO:0006633;gbkey=CDS;gene=acpP;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016535861.1;locus_tag=AD39_RS17735;product=acyl carrier protein;protein_id=WP_000103754.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 66674 67915 . + . ID=gene-AD39_RS17730;Name=fabF;gbkey=Gene;gene=fabF;gene_biotype=protein_coding;locus_tag=AD39_RS17730;old_locus_tag=AD39_1196 NZ_JJLH01000015.1 Protein Homology CDS 66674 67915 . + 0 ID=cds-WP_000044677.1;Parent=gene-AD39_RS17730;Dbxref=GenBank:WP_000044677.1;Name=WP_000044677.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabF;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309500.1;locus_tag=AD39_RS17730;product=beta-ketoacyl-ACP synthase II;protein_id=WP_000044677.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 68035 68844 . + . ID=gene-AD39_RS17725;Name=pabC;gbkey=Gene;gene=pabC;gene_biotype=protein_coding;locus_tag=AD39_RS17725;old_locus_tag=AD39_1197 NZ_JJLH01000015.1 Protein Homology CDS 68035 68844 . + 0 ID=cds-WP_000478703.1;Parent=gene-AD39_RS17725;Dbxref=GenBank:WP_000478703.1;Name=WP_000478703.1;Ontology_term=GO:0046656,GO:0008696,GO:0030170;gbkey=CDS;gene=pabC;go_function=4-amino-4-deoxychorismate lyase activity|0008696||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=folic acid biosynthetic process|0046656||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707012.1;locus_tag=AD39_RS17725;product=aminodeoxychorismate lyase;protein_id=WP_000478703.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 68847 69869 . + . ID=gene-AD39_RS17720;Name=yceG;gbkey=Gene;gene=yceG;gene_biotype=protein_coding;locus_tag=AD39_RS17720;old_locus_tag=AD39_1198 NZ_JJLH01000015.1 Protein Homology CDS 68847 69869 . + 0 ID=cds-WP_000756838.1;Parent=gene-AD39_RS17720;Dbxref=GenBank:WP_000756838.1;Name=WP_000756838.1;gbkey=CDS;gene=yceG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415615.1;locus_tag=AD39_RS17720;product=cell division protein YceG;protein_id=WP_000756838.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 69859 70500 . + . ID=gene-AD39_RS17715;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;locus_tag=AD39_RS17715;old_locus_tag=AD39_1199 NZ_JJLH01000015.1 Protein Homology CDS 69859 70500 . + 0 ID=cds-WP_001257000.1;Parent=gene-AD39_RS17715;Dbxref=GenBank:WP_001257000.1;Name=WP_001257000.1;Ontology_term=GO:0006233,GO:0004798,GO:0005524;gbkey=CDS;gene=tmk;go_function=dTMP kinase activity|0004798||IEA,ATP binding|0005524||IEA;go_process=dTDP biosynthetic process|0006233||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415616.1;locus_tag=AD39_RS17715;product=dTMP kinase;protein_id=WP_001257000.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 70497 71501 . + . ID=gene-AD39_RS17710;Name=holB;gbkey=Gene;gene=holB;gene_biotype=protein_coding;locus_tag=AD39_RS17710;old_locus_tag=AD39_1200 NZ_JJLH01000015.1 Protein Homology CDS 70497 71501 . + 0 ID=cds-WP_001267931.1;Parent=gene-AD39_RS17710;Dbxref=GenBank:WP_001267931.1;Name=WP_001267931.1;Ontology_term=GO:0006260,GO:0003887,GO:0008408;gbkey=CDS;gene=holB;go_function=DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309504.1;locus_tag=AD39_RS17710;product=DNA polymerase III subunit delta';protein_id=WP_001267931.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 71512 72309 . + . ID=gene-AD39_RS17705;Name=ycfH;gbkey=Gene;gene=ycfH;gene_biotype=protein_coding;locus_tag=AD39_RS17705;old_locus_tag=AD39_1201 NZ_JJLH01000015.1 Protein Homology CDS 71512 72309 . + 0 ID=cds-WP_000480245.1;Parent=gene-AD39_RS17705;Dbxref=GenBank:WP_000480245.1;Name=WP_000480245.1;Ontology_term=GO:0016788;gbkey=CDS;gene=ycfH;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309505.1;locus_tag=AD39_RS17705;product=metal-dependent hydrolase;protein_id=WP_000480245.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 72604 74037 . + . ID=gene-AD39_RS17700;Name=ptsG;gbkey=Gene;gene=ptsG;gene_biotype=protein_coding;locus_tag=AD39_RS17700;old_locus_tag=AD39_1202 NZ_JJLH01000015.1 Protein Homology CDS 72604 74037 . + 0 ID=cds-WP_001409058.1;Parent=gene-AD39_RS17700;Dbxref=GenBank:WP_001409058.1;Name=WP_001409058.1;Ontology_term=GO:0009401,GO:1904659,GO:0008982,GO:0055056;gbkey=CDS;gene=ptsG;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,D-glucose transmembrane transporter activity|0055056||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,D-glucose transmembrane transport|1904659||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000475716.1;locus_tag=AD39_RS17700;product=PTS glucose transporter subunit IIBC;protein_id=WP_001409058.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 74097 76286 . - . ID=gene-AD39_RS17695;Name=fhuE;gbkey=Gene;gene=fhuE;gene_biotype=protein_coding;locus_tag=AD39_RS17695;old_locus_tag=AD39_1203 NZ_JJLH01000015.1 Protein Homology CDS 74097 76286 . - 0 ID=cds-WP_000953486.1;Parent=gene-AD39_RS17695;Dbxref=GenBank:WP_000953486.1;Name=WP_000953486.1;Ontology_term=GO:0015891,GO:0015344,GO:0038023,GO:0009279;gbkey=CDS;gene=fhuE;go_component=cell outer membrane|0009279||IEA;go_function=siderophore uptake transmembrane transporter activity|0015344||IEA,signaling receptor activity|0038023||IEA;go_process=siderophore transport|0015891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309507.1;locus_tag=AD39_RS17695;product=ferric-rhodotorulic acid/ferric-coprogen receptor FhuE;protein_id=WP_000953486.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 76620 76979 . + . ID=gene-AD39_RS17690;Name=hinT;gbkey=Gene;gene=hinT;gene_biotype=protein_coding;locus_tag=AD39_RS17690;old_locus_tag=AD39_1206 NZ_JJLH01000015.1 Protein Homology CDS 76620 76979 . + 0 ID=cds-WP_000807125.1;Parent=gene-AD39_RS17690;Dbxref=GenBank:WP_000807125.1;Name=WP_000807125.1;gbkey=CDS;gene=hinT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415621.3;locus_tag=AD39_RS17690;product=purine nucleoside phosphoramidase;protein_id=WP_000807125.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 76982 77359 . + . ID=gene-AD39_RS17685;Name=ycfL;gbkey=Gene;gene=ycfL;gene_biotype=protein_coding;locus_tag=AD39_RS17685;old_locus_tag=AD39_1207 NZ_JJLH01000015.1 Protein Homology CDS 76982 77359 . + 0 ID=cds-WP_001225279.1;Parent=gene-AD39_RS17685;Dbxref=GenBank:WP_001225279.1;Name=WP_001225279.1;gbkey=CDS;gene=ycfL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309509.1;locus_tag=AD39_RS17685;product=YcfL family protein;protein_id=WP_001225279.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 77373 78014 . + . ID=gene-AD39_RS17680;Name=lpoB;gbkey=Gene;gene=lpoB;gene_biotype=protein_coding;locus_tag=AD39_RS17680;old_locus_tag=AD39_1208 NZ_JJLH01000015.1 Protein Homology CDS 77373 78014 . + 0 ID=cds-WP_000164439.1;Parent=gene-AD39_RS17680;Dbxref=GenBank:WP_000164439.1;Name=WP_000164439.1;gbkey=CDS;gene=lpoB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309510.1;locus_tag=AD39_RS17680;product=penicillin-binding protein activator LpoB;protein_id=WP_000164439.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 77995 78819 . + . ID=gene-AD39_RS0123725;Name=thiK;gbkey=Gene;gene=thiK;gene_biotype=protein_coding;locus_tag=AD39_RS0123725;old_locus_tag=AD39_1209 NZ_JJLH01000015.1 Protein Homology CDS 77995 78819 . + 0 ID=cds-WP_032287522.1;Parent=gene-AD39_RS0123725;Dbxref=GenBank:WP_032287522.1;Name=WP_032287522.1;Ontology_term=GO:0006772,GO:0016310,GO:0019165;gbkey=CDS;gene=thiK;go_function=thiamine kinase activity|0019165||IEA;go_process=thiamine metabolic process|0006772||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707021.1;locus_tag=AD39_RS0123725;product=thiamine kinase;protein_id=WP_032287522.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 78830 79855 . + . ID=gene-AD39_RS17675;Name=nagZ;gbkey=Gene;gene=nagZ;gene_biotype=protein_coding;locus_tag=AD39_RS17675;old_locus_tag=AD39_1210 NZ_JJLH01000015.1 Protein Homology CDS 78830 79855 . + 0 ID=cds-WP_000529331.1;Parent=gene-AD39_RS17675;Dbxref=GenBank:WP_000529331.1;Name=WP_000529331.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=nagZ;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415625.1;locus_tag=AD39_RS17675;product=beta-N-acetylhexosaminidase;protein_id=WP_000529331.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 79878 80420 . + . ID=gene-AD39_RS17670;Name=ycfP;gbkey=Gene;gene=ycfP;gene_biotype=protein_coding;locus_tag=AD39_RS17670;old_locus_tag=AD39_1211 NZ_JJLH01000015.1 Protein Homology CDS 79878 80420 . + 0 ID=cds-WP_000587933.1;Parent=gene-AD39_RS17670;Dbxref=GenBank:WP_000587933.1;Name=WP_000587933.1;gbkey=CDS;gene=ycfP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126033.1;locus_tag=AD39_RS17670;product=alpha/beta hydrolase YcfP;protein_id=WP_000587933.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 80828 82132 . + . ID=gene-AD39_RS17665;Name=ndh;gbkey=Gene;gene=ndh;gene_biotype=protein_coding;locus_tag=AD39_RS17665;old_locus_tag=AD39_1212 NZ_JJLH01000015.1 Protein Homology CDS 80828 82132 . + 0 ID=cds-WP_000211045.1;Parent=gene-AD39_RS17665;Dbxref=GenBank:WP_000211045.1;Name=WP_000211045.1;gbkey=CDS;gene=ndh;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017384716.1;locus_tag=AD39_RS17665;product=NADH-quinone dehydrogenase;protein_id=WP_000211045.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 82359 82898 . + . ID=gene-AD39_RS17660;Name=ycfJ;gbkey=Gene;gene=ycfJ;gene_biotype=protein_coding;locus_tag=AD39_RS17660;old_locus_tag=AD39_1213 NZ_JJLH01000015.1 Protein Homology CDS 82359 82898 . + 0 ID=cds-WP_001043459.1;Parent=gene-AD39_RS17660;Dbxref=GenBank:WP_001043459.1;Name=WP_001043459.1;gbkey=CDS;gene=ycfJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415628.1;locus_tag=AD39_RS17660;product=glycine zipper 2TM domain-containing protein;protein_id=WP_001043459.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 82960 83592 . - . ID=gene-AD39_RS17655;Name=comR;gbkey=Gene;gene=comR;gene_biotype=protein_coding;locus_tag=AD39_RS17655;old_locus_tag=AD39_1214 NZ_JJLH01000015.1 Protein Homology CDS 82960 83592 . - 0 ID=cds-WP_000179805.1;Parent=gene-AD39_RS17655;Dbxref=GenBank:WP_000179805.1;Name=WP_000179805.1;gbkey=CDS;gene=comR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415629.4;locus_tag=AD39_RS17655;product=TetR family copper-responsive transcriptional repressor ComR;protein_id=WP_000179805.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 83833 84090 . + . ID=gene-AD39_RS17650;Name=bhsA;gbkey=Gene;gene=bhsA;gene_biotype=protein_coding;locus_tag=AD39_RS17650;old_locus_tag=AD39_1215 NZ_JJLH01000015.1 Protein Homology CDS 83833 84090 . + 0 ID=cds-WP_000800153.1;Parent=gene-AD39_RS17650;Dbxref=GenBank:WP_000800153.1;Name=WP_000800153.1;Ontology_term=GO:0006950,GO:0046688;gbkey=CDS;gene=bhsA;go_process=response to stress|0006950||IEA,response to copper ion|0046688||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309517.1;locus_tag=AD39_RS17650;product=multiple stress resistance protein BhsA;protein_id=WP_000800153.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 84173 85135 . - . ID=gene-AD39_RS17645;Name=ldtC;gbkey=Gene;gene=ldtC;gene_biotype=protein_coding;locus_tag=AD39_RS17645;old_locus_tag=AD39_1216 NZ_JJLH01000015.1 Protein Homology CDS 84173 85135 . - 0 ID=cds-WP_077747027.1;Parent=gene-AD39_RS17645;Dbxref=GenBank:WP_077747027.1;Name=WP_077747027.1;gbkey=CDS;gene=ldtC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415631.1;locus_tag=AD39_RS17645;product=L%2CD-transpeptidase LdtC;protein_id=WP_077747027.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 85279 88725 . - . ID=gene-AD39_RS17640;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;locus_tag=AD39_RS17640;old_locus_tag=AD39_1217 NZ_JJLH01000015.1 Protein Homology CDS 85279 88725 . - 0 ID=cds-WP_001442350.1;Parent=gene-AD39_RS17640;Dbxref=GenBank:WP_001442350.1;Name=WP_001442350.1;Ontology_term=GO:0006281,GO:0003676,GO:0003684,GO:0005524;gbkey=CDS;gene=mfd;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415632.1;locus_tag=AD39_RS17640;product=transcription-repair coupling factor;protein_id=WP_001442350.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 88853 89926 . - . ID=gene-AD39_RS17635;Name=ycfT;gbkey=Gene;gene=ycfT;gene_biotype=protein_coding;locus_tag=AD39_RS17635;old_locus_tag=AD39_1218 NZ_JJLH01000015.1 Protein Homology CDS 88853 89926 . - 0 ID=cds-WP_000810253.1;Parent=gene-AD39_RS17635;Dbxref=GenBank:WP_000810253.1;Name=WP_000810253.1;gbkey=CDS;gene=ycfT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415633.1;locus_tag=AD39_RS17635;product=acyltransferase family protein;protein_id=WP_000810253.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 90188 91387 . + . ID=gene-AD39_RS17630;Name=lolC;gbkey=Gene;gene=lolC;gene_biotype=protein_coding;locus_tag=AD39_RS17630;old_locus_tag=AD39_1219 NZ_JJLH01000015.1 Protein Homology CDS 90188 91387 . + 0 ID=cds-WP_001382345.1;Parent=gene-AD39_RS17630;Dbxref=GenBank:WP_001382345.1;Name=WP_001382345.1;Ontology_term=GO:0042953,GO:0016020;gbkey=CDS;gene=lolC;go_component=membrane|0016020||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004976588.1;locus_tag=AD39_RS17630;product=lipoprotein-releasing ABC transporter permease subunit LolC;protein_id=WP_001382345.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 91380 92081 . + . ID=gene-AD39_RS17625;Name=lolD;gbkey=Gene;gene=lolD;gene_biotype=protein_coding;locus_tag=AD39_RS17625;old_locus_tag=AD39_1220 NZ_JJLH01000015.1 Protein Homology CDS 91380 92081 . + 0 ID=cds-WP_001033695.1;Parent=gene-AD39_RS17625;Dbxref=GenBank:WP_001033695.1;Name=WP_001033695.1;Ontology_term=GO:0042953,GO:0005524,GO:0016020;gbkey=CDS;gene=lolD;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309522.2;locus_tag=AD39_RS17625;product=lipoprotein-releasing ABC transporter ATP-binding protein LolD;protein_id=WP_001033695.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 92081 93325 . + . ID=gene-AD39_RS17620;Name=lolE;gbkey=Gene;gene=lolE;gene_biotype=protein_coding;locus_tag=AD39_RS17620;old_locus_tag=AD39_1221 NZ_JJLH01000015.1 Protein Homology CDS 92081 93325 . + 0 ID=cds-WP_001251348.1;Parent=gene-AD39_RS17620;Dbxref=GenBank:WP_001251348.1;Name=WP_001251348.1;Ontology_term=GO:0042953;gbkey=CDS;gene=lolE;go_process=lipoprotein transport|0042953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415636.1;locus_tag=AD39_RS17620;product=lipoprotein-releasing ABC transporter permease subunit LolE;protein_id=WP_001251348.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 93354 94265 . + . ID=gene-AD39_RS17615;Name=nagK;gbkey=Gene;gene=nagK;gene_biotype=protein_coding;locus_tag=AD39_RS17615;old_locus_tag=AD39_1222 NZ_JJLH01000015.1 Protein Homology CDS 93354 94265 . + 0 ID=cds-WP_000291270.1;Parent=gene-AD39_RS17615;Dbxref=GenBank:WP_000291270.1;Name=WP_000291270.1;Ontology_term=GO:0045127;gbkey=CDS;gene=nagK;go_function=N-acetylglucosamine kinase activity|0045127||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415637.1;locus_tag=AD39_RS17615;product=N-acetylglucosamine kinase;protein_id=WP_000291270.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 94281 95102 . + . ID=gene-AD39_RS17610;Name=cobB;gbkey=Gene;gene=cobB;gene_biotype=protein_coding;locus_tag=AD39_RS17610;old_locus_tag=AD39_1223 NZ_JJLH01000015.1 Protein Homology CDS 94281 95102 . + 0 ID=cds-WP_000952736.1;Parent=gene-AD39_RS17610;Dbxref=GenBank:WP_000952736.1;Name=WP_000952736.1;Ontology_term=GO:0070403;gbkey=CDS;gene=cobB;go_function=NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309525.1;locus_tag=AD39_RS17610;product=Sir2 family NAD+-dependent deacetylase;protein_id=WP_000952736.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 95241 96029 . - . ID=gene-AD39_RS17605;Name=ycfZ;gbkey=Gene;gene=ycfZ;gene_biotype=protein_coding;locus_tag=AD39_RS17605;old_locus_tag=AD39_1224 NZ_JJLH01000015.1 Protein Homology CDS 95241 96029 . - 0 ID=cds-WP_000713472.1;Parent=gene-AD39_RS17605;Dbxref=GenBank:WP_000713472.1;Name=WP_000713472.1;Ontology_term=GO:0016791;gbkey=CDS;gene=ycfZ;go_function=phosphatase activity|0016791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415639.1;locus_tag=AD39_RS17605;product=TPM domain-containing protein;protein_id=WP_000713472.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 96026 96487 . - . ID=gene-AD39_RS17600;Name=AD39_RS17600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17600;old_locus_tag=AD39_1225 NZ_JJLH01000015.1 Protein Homology CDS 96026 96487 . - 0 ID=cds-WP_000076381.1;Parent=gene-AD39_RS17600;Dbxref=GenBank:WP_000076381.1;Name=WP_000076381.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001460774.1;locus_tag=AD39_RS17600;product=DUF3592 domain-containing protein;protein_id=WP_000076381.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 96545 97591 . - . ID=gene-AD39_RS17595;Name=potD;gbkey=Gene;gene=potD;gene_biotype=protein_coding;locus_tag=AD39_RS17595;old_locus_tag=AD39_1226 NZ_JJLH01000015.1 Protein Homology CDS 96545 97591 . - 0 ID=cds-WP_000759309.1;Parent=gene-AD39_RS17595;Dbxref=GenBank:WP_000759309.1;Name=WP_000759309.1;Ontology_term=GO:0015846,GO:0019808,GO:0042597;gbkey=CDS;gene=potD;go_component=periplasmic space|0042597||IEA;go_function=polyamine binding|0019808||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121082.1;locus_tag=AD39_RS17595;product=spermidine/putrescine ABC transporter substrate-binding protein PotD;protein_id=WP_000759309.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 97588 98382 . - . ID=gene-AD39_RS17590;Name=potC;gbkey=Gene;gene=potC;gene_biotype=protein_coding;locus_tag=AD39_RS17590;old_locus_tag=AD39_1227 NZ_JJLH01000015.1 Protein Homology CDS 97588 98382 . - 0 ID=cds-WP_000580316.1;Parent=gene-AD39_RS17590;Dbxref=GenBank:WP_000580316.1;Name=WP_000580316.1;Ontology_term=GO:0055085;gbkey=CDS;gene=potC;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309527.1;locus_tag=AD39_RS17590;product=spermidine/putrescine ABC transporter permease PotC;protein_id=WP_000580316.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 98379 99236 . - . ID=gene-AD39_RS17585;Name=potB;gbkey=Gene;gene=potB;gene_biotype=protein_coding;locus_tag=AD39_RS17585;old_locus_tag=AD39_1228 NZ_JJLH01000015.1 Protein Homology CDS 98379 99236 . - 0 ID=cds-WP_000799401.1;Parent=gene-AD39_RS17585;Dbxref=GenBank:WP_000799401.1;Name=WP_000799401.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=potB;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000799378.1;locus_tag=AD39_RS17585;product=spermidine/putrescine ABC transporter permease PotB;protein_id=WP_000799401.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 99220 100356 . - . ID=gene-AD39_RS17580;Name=potA;gbkey=Gene;gene=potA;gene_biotype=protein_coding;locus_tag=AD39_RS17580;old_locus_tag=AD39_1229 NZ_JJLH01000015.1 Protein Homology CDS 99220 100356 . - 0 ID=cds-WP_000531594.1;Parent=gene-AD39_RS17580;Dbxref=GenBank:WP_000531594.1;Name=WP_000531594.1;Ontology_term=GO:0015846,GO:0005524,GO:0022857,GO:0016020,GO:0043190;gbkey=CDS;gene=potA;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;go_process=polyamine transport|0015846||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309598.1;locus_tag=AD39_RS17580;product=spermidine/putrescine ABC transporter ATP-binding protein PotA;protein_id=WP_000531594.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 100606 101835 . + . ID=gene-AD39_RS17575;Name=pepT;gbkey=Gene;gene=pepT;gene_biotype=protein_coding;locus_tag=AD39_RS17575;old_locus_tag=AD39_1230 NZ_JJLH01000015.1 Protein Homology CDS 100606 101835 . + 0 ID=cds-WP_000359447.1;Parent=gene-AD39_RS17575;Dbxref=GenBank:WP_000359447.1;Name=WP_000359447.1;Ontology_term=GO:0006508,GO:0008270,GO:0045148;gbkey=CDS;gene=pepT;go_function=zinc ion binding|0008270||IEA,tripeptide aminopeptidase activity|0045148||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000359435.1;locus_tag=AD39_RS17575;product=peptidase T;protein_id=WP_000359447.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 101981 103102 . - . ID=gene-AD39_RS17570;Name=roxA;gbkey=Gene;gene=roxA;gene_biotype=protein_coding;gene_synonym=ycfD;locus_tag=AD39_RS17570;old_locus_tag=AD39_1231 NZ_JJLH01000015.1 Protein Homology CDS 101981 103102 . - 0 ID=cds-WP_000456506.1;Parent=gene-AD39_RS17570;Dbxref=GenBank:WP_000456506.1;Name=WP_000456506.1;gbkey=CDS;gene=roxA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415646.4;locus_tag=AD39_RS17570;product=[50S ribosomal protein L16]-arginine 3-hydroxylase;protein_id=WP_000456506.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 103178 104638 . - . ID=gene-AD39_RS17565;Name=phoQ;gbkey=Gene;gene=phoQ;gene_biotype=protein_coding;locus_tag=AD39_RS17565;old_locus_tag=AD39_1232 NZ_JJLH01000015.1 Protein Homology CDS 103178 104638 . - 0 ID=cds-WP_001464324.1;Parent=gene-AD39_RS17565;Dbxref=GenBank:WP_001464324.1;Name=WP_001464324.1;Ontology_term=GO:0000160,GO:0000155,GO:0004673,GO:0016772;gbkey=CDS;gene=phoQ;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein histidine kinase activity|0004673||IEA,transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415647.1;locus_tag=AD39_RS17565;product=two-component system sensor histidine kinase PhoQ;protein_id=WP_001464324.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 104638 105309 . - . ID=gene-AD39_RS17560;Name=phoP;gbkey=Gene;gene=phoP;gene_biotype=protein_coding;locus_tag=AD39_RS17560;old_locus_tag=AD39_1233 NZ_JJLH01000015.1 Protein Homology CDS 104638 105309 . - 0 ID=cds-WP_001265481.1;Parent=gene-AD39_RS17560;Dbxref=GenBank:WP_001265481.1;Name=WP_001265481.1;gbkey=CDS;gene=phoP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707059.1;locus_tag=AD39_RS17560;product=two-component system response regulator PhoP;protein_id=WP_001265481.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 105477 106847 . - . ID=gene-AD39_RS17555;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;locus_tag=AD39_RS17555;old_locus_tag=AD39_1235 NZ_JJLH01000015.1 Protein Homology CDS 105477 106847 . - 0 ID=cds-WP_000423729.1;Parent=gene-AD39_RS17555;Dbxref=GenBank:WP_000423729.1;Name=WP_000423729.1;Ontology_term=GO:0006188,GO:0009152,GO:0004018;gbkey=CDS;gene=purB;go_function=N6-(1%2C2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|0004018||IEA;go_process=IMP biosynthetic process|0006188||IEA,purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002950897.1;locus_tag=AD39_RS17555;product=adenylosuccinate lyase;protein_id=WP_000423729.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 106851 107492 . - . ID=gene-AD39_RS17550;Name=hflD;gbkey=Gene;gene=hflD;gene_biotype=protein_coding;locus_tag=AD39_RS17550;old_locus_tag=AD39_1236 NZ_JJLH01000015.1 Protein Homology CDS 106851 107492 . - 0 ID=cds-WP_001297479.1;Parent=gene-AD39_RS17550;Dbxref=GenBank:WP_001297479.1;Name=WP_001297479.1;gbkey=CDS;gene=hflD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415650.1;locus_tag=AD39_RS17550;product=high frequency lysogenization protein HflD;protein_id=WP_001297479.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 107528 108634 . - . ID=gene-AD39_RS17545;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;gene_synonym=trmU;locus_tag=AD39_RS17545;old_locus_tag=AD39_1237 NZ_JJLH01000015.1 Protein Homology CDS 107528 108634 . - 0 ID=cds-WP_001297484.1;Parent=gene-AD39_RS17545;Dbxref=GenBank:WP_001297484.1;Name=WP_001297484.1;Ontology_term=GO:0002143,GO:0006396,GO:0004808,GO:0016783,GO:0005737;gbkey=CDS;gene=mnmA;go_component=cytoplasm|0005737||IEA;go_function=tRNA (5-methylaminomethyl-2-thiouridylate)(34)-methyltransferase activity|0004808||IEA,sulfurtransferase activity|0016783||IEA;go_process=tRNA wobble position uridine thiolation|0002143||IEA,RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415651.4;locus_tag=AD39_RS17545;product=tRNA 2-thiouridine(34) synthase MnmA;protein_id=WP_001297484.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 108688 109149 . - . ID=gene-AD39_RS17540;Name=nudJ;gbkey=Gene;gene=nudJ;gene_biotype=protein_coding;locus_tag=AD39_RS17540;old_locus_tag=AD39_1238 NZ_JJLH01000015.1 Protein Homology CDS 108688 109149 . - 0 ID=cds-WP_000476093.1;Parent=gene-AD39_RS17540;Dbxref=GenBank:WP_000476093.1;Name=WP_000476093.1;gbkey=CDS;gene=nudJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309633.1;locus_tag=AD39_RS17540;product=phosphatase NudJ;protein_id=WP_000476093.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 109159 109812 . - . ID=gene-AD39_RS17535;Name=rluE;gbkey=Gene;gene=rluE;gene_biotype=protein_coding;locus_tag=AD39_RS17535;old_locus_tag=AD39_1239 NZ_JJLH01000015.1 Protein Homology CDS 109159 109812 . - 0 ID=cds-WP_001248691.1;Parent=gene-AD39_RS17535;Dbxref=GenBank:WP_001248691.1;Name=WP_001248691.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;gene=rluE;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415653.4;locus_tag=AD39_RS17535;product=23S rRNA pseudouridine(2457) synthase RluE;protein_id=WP_001248691.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 109984 111234 . + . ID=gene-AD39_RS17530;Name=icd;gbkey=Gene;gene=icd;gene_biotype=protein_coding;locus_tag=AD39_RS17530;old_locus_tag=AD39_1240 NZ_JJLH01000015.1 Protein Homology CDS 109984 111234 . + 0 ID=cds-WP_000444487.1;Parent=gene-AD39_RS17530;Dbxref=GenBank:WP_000444487.1;Name=WP_000444487.1;Ontology_term=GO:0006099,GO:0000287,GO:0004450,GO:0051287;gbkey=CDS;gene=icd;go_function=magnesium ion binding|0000287||IEA,isocitrate dehydrogenase (NADP+) activity|0004450||IEA,NAD binding|0051287||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000444467.1;locus_tag=AD39_RS17530;product=NADP-dependent isocitrate dehydrogenase;protein_id=WP_000444487.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 111337 111660 . - . ID=gene-AD39_RS0123735;Name=iraM;gbkey=Gene;gene=iraM;gene_biotype=protein_coding;locus_tag=AD39_RS0123735 NZ_JJLH01000015.1 Protein Homology CDS 111337 111660 . - 0 ID=cds-WP_001307134.1;Parent=gene-AD39_RS0123735;Dbxref=GenBank:WP_001307134.1;Name=WP_001307134.1;Ontology_term=GO:0043856,GO:0005737;gbkey=CDS;gene=iraM;go_component=cytoplasm|0005737||IEA;go_function=anti-sigma factor antagonist activity|0043856||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415678.1;locus_tag=AD39_RS0123735;product=anti-adapter protein IraM;protein_id=WP_001307134.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 111913 111957 . - . ID=gene-AD39_RS29380;Name=AD39_RS29380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29380 NZ_JJLH01000015.1 Protein Homology CDS 111913 111957 . - 0 ID=cds-WP_120795380.1;Parent=gene-AD39_RS29380;Dbxref=GenBank:WP_120795380.1;Name=WP_120795380.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518766.1;locus_tag=AD39_RS29380;product=protein YmgK;protein_id=WP_120795380.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 112193 112303 . - . ID=gene-AD39_RS28940;Name=AD39_RS28940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28940 NZ_JJLH01000015.1 Protein Homology CDS 112193 112303 . - 0 ID=cds-WP_032141808.1;Parent=gene-AD39_RS28940;Dbxref=GenBank:WP_032141808.1;Name=WP_032141808.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518767.1;locus_tag=AD39_RS28940;product=hypothetical protein;protein_id=WP_032141808.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 112356 112760 . - . ID=gene-AD39_RS17525;Name=ycgX;gbkey=Gene;gene=ycgX;gene_biotype=protein_coding;locus_tag=AD39_RS17525;old_locus_tag=AD39_1242 NZ_JJLH01000015.1 Protein Homology CDS 112356 112760 . - 0 ID=cds-WP_000373101.1;Parent=gene-AD39_RS17525;Dbxref=GenBank:WP_000373101.1;Name=WP_000373101.1;gbkey=CDS;gene=ycgX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415679.1;locus_tag=AD39_RS17525;product=DUF1398 domain-containing protein;protein_id=WP_000373101.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 112981 113712 . - . ID=gene-AD39_RS17520;Name=bluR;gbkey=Gene;gene=bluR;gene_biotype=protein_coding;locus_tag=AD39_RS17520;old_locus_tag=AD39_1243 NZ_JJLH01000015.1 Protein Homology CDS 112981 113712 . - 0 ID=cds-WP_000332308.1;Parent=gene-AD39_RS17520;Dbxref=GenBank:WP_000332308.1;Name=WP_000332308.1;gbkey=CDS;gene=bluR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415680.1;locus_tag=AD39_RS17520;product=DNA-binding transcriptional repressor BluR;protein_id=WP_000332308.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 113917 115128 . - . ID=gene-AD39_RS17515;Name=bluF;gbkey=Gene;gene=bluF;gene_biotype=protein_coding;locus_tag=AD39_RS17515;old_locus_tag=AD39_1244 NZ_JJLH01000015.1 Protein Homology CDS 113917 115128 . - 0 ID=cds-WP_001299269.1;Parent=gene-AD39_RS17515;Dbxref=GenBank:WP_001299269.1;Name=WP_001299269.1;gbkey=CDS;gene=bluF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415681.1;locus_tag=AD39_RS17515;product=blue light-responsive regulator BluF;protein_id=WP_001299269.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 115442 115678 . + . ID=gene-AD39_RS0123745;Name=ycgZ;gbkey=Gene;gene=ycgZ;gene_biotype=protein_coding;locus_tag=AD39_RS0123745 NZ_JJLH01000015.1 Protein Homology CDS 115442 115678 . + 0 ID=cds-WP_000554144.1;Parent=gene-AD39_RS0123745;Dbxref=GenBank:WP_000554144.1;Name=WP_000554144.1;gbkey=CDS;gene=ycgZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415682.1;locus_tag=AD39_RS0123745;product=regulatory protein YcgZ;protein_id=WP_000554144.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 115721 115993 . + . ID=gene-AD39_RS0123750;Name=ymgA;gbkey=Gene;gene=ymgA;gene_biotype=protein_coding;locus_tag=AD39_RS0123750 NZ_JJLH01000015.1 Protein Homology CDS 115721 115993 . + 0 ID=cds-WP_000857995.1;Parent=gene-AD39_RS0123750;Dbxref=GenBank:WP_000857995.1;Name=WP_000857995.1;gbkey=CDS;gene=ymgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415683.1;locus_tag=AD39_RS0123750;product=two-component-system connector protein YmgA;protein_id=WP_000857995.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 116022 116288 . + . ID=gene-AD39_RS17510;Name=ariR;gbkey=Gene;gene=ariR;gene_biotype=protein_coding;gene_synonym=ymgB;locus_tag=AD39_RS17510;old_locus_tag=AD39_1245 NZ_JJLH01000015.1 Protein Homology CDS 116022 116288 . + 0 ID=cds-WP_000888772.1;Parent=gene-AD39_RS17510;Dbxref=GenBank:WP_000888772.1;Name=WP_000888772.1;gbkey=CDS;gene=ariR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415684.1;locus_tag=AD39_RS17510;product=biofilm/acid-resistance regulator AriR;protein_id=WP_000888772.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 116401 116649 . + . ID=gene-AD39_RS0123755;Name=ymgC;gbkey=Gene;gene=ymgC;gene_biotype=protein_coding;locus_tag=AD39_RS0123755;old_locus_tag=AD39_1246 NZ_JJLH01000015.1 Protein Homology CDS 116401 116649 . + 0 ID=cds-WP_001065752.1;Parent=gene-AD39_RS0123755;Dbxref=GenBank:WP_001065752.1;Name=WP_001065752.1;gbkey=CDS;gene=ymgC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415685.1;locus_tag=AD39_RS0123755;product=protein YmgC;protein_id=WP_001065752.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 116981 118504 . + . ID=gene-AD39_RS0123760;Name=pdeG;gbkey=Gene;gene=pdeG;gene_biotype=protein_coding;locus_tag=AD39_RS0123760 NZ_JJLH01000015.1 Protein Homology CDS 116981 118504 . + 0 ID=cds-WP_001246498.1;Parent=gene-AD39_RS0123760;Dbxref=GenBank:WP_001246498.1;Name=WP_001246498.1;gbkey=CDS;gene=pdeG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415686.2;locus_tag=AD39_RS0123760;product=EAL domain-containing protein;protein_id=WP_001246498.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 118636 118854 . + . ID=gene-AD39_RS17505;Name=ymgF;gbkey=Gene;gene=ymgF;gene_biotype=protein_coding;locus_tag=AD39_RS17505;old_locus_tag=AD39_1248 NZ_JJLH01000015.1 Protein Homology CDS 118636 118854 . + 0 ID=cds-WP_001065861.1;Parent=gene-AD39_RS17505;Dbxref=GenBank:WP_001065861.1;Name=WP_001065861.1;Ontology_term=GO:0051301;gbkey=CDS;gene=ymgF;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588447.1;locus_tag=AD39_RS17505;product=cell division-associated protein YmgF;protein_id=WP_001065861.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 119254 119463 . + . ID=gene-AD39_RS30035;Name=AD39_RS30035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30035;old_locus_tag=AD39_1251 NZ_JJLH01000015.1 Protein Homology CDS 119254 119463 . + 0 ID=cds-WP_001297677.1;Parent=gene-AD39_RS30035;Dbxref=GenBank:WP_001297677.1;Name=WP_001297677.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001297677.1;locus_tag=AD39_RS30035;product=hypothetical protein;protein_id=WP_001297677.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 119580 121901 . + . ID=gene-AD39_RS0123765;Name=AD39_RS0123765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123765 NZ_JJLH01000015.1 Protein Homology CDS 119580 121901 . + 0 ID=cds-WP_024184902.1;Parent=gene-AD39_RS0123765;Dbxref=GenBank:WP_024184902.1;Name=WP_024184902.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: protein motif:HMM:TIGR01414.1;locus_tag=AD39_RS0123765;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_024184902.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 121958 122293 . - . ID=gene-AD39_RS17490;Name=ymgD;gbkey=Gene;gene=ymgD;gene_biotype=protein_coding;locus_tag=AD39_RS17490;old_locus_tag=AD39_1254 NZ_JJLH01000015.1 Protein Homology CDS 121958 122293 . - 0 ID=cds-WP_000979977.1;Parent=gene-AD39_RS17490;Dbxref=GenBank:WP_000979977.1;Name=WP_000979977.1;gbkey=CDS;gene=ymgD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707068.1;locus_tag=AD39_RS17490;product=YmgD family protein;protein_id=WP_000979977.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 122297 122641 . - . ID=gene-AD39_RS17485;Name=ymgG;gbkey=Gene;gene=ymgG;gene_biotype=protein_coding;locus_tag=AD39_RS17485;old_locus_tag=AD39_1255 NZ_JJLH01000015.1 Protein Homology CDS 122297 122641 . - 0 ID=cds-WP_000726974.1;Parent=gene-AD39_RS17485;Dbxref=GenBank:WP_000726974.1;Name=WP_000726974.1;gbkey=CDS;gene=ymgG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415690.5;locus_tag=AD39_RS17485;product=YMGG-like glycine zipper-containing protein;protein_id=WP_000726974.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 122643 122816 . - . ID=gene-AD39_RS17480;Name=ymgI;gbkey=Gene;gene=ymgI;gene_biotype=protein_coding;locus_tag=AD39_RS17480;old_locus_tag=AD39_1256 NZ_JJLH01000015.1 Protein Homology CDS 122643 122816 . - 0 ID=cds-WP_000122462.1;Parent=gene-AD39_RS17480;Dbxref=GenBank:WP_000122462.1;Name=WP_000122462.1;gbkey=CDS;gene=ymgI;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165314.1;locus_tag=AD39_RS17480;product=protein YmgI;protein_id=WP_000122462.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 122917 123102 . + . ID=gene-AD39_RS26680;Name=ymgJ;gbkey=Gene;gene=ymgJ;gene_biotype=protein_coding;locus_tag=AD39_RS26680 NZ_JJLH01000015.1 Protein Homology CDS 122917 123102 . + 0 ID=cds-WP_001325743.1;Parent=gene-AD39_RS26680;Dbxref=GenBank:WP_001325743.1;Name=WP_001325743.1;gbkey=CDS;gene=ymgJ;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165315.1;locus_tag=AD39_RS26680;product=protein YmgJ;protein_id=WP_001325743.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 123063 123182 . + . ID=gene-AD39_RS28945;Name=AD39_RS28945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28945;old_locus_tag=AD39_1257 NZ_JJLH01000015.1 Protein Homology CDS 123063 123182 . + 0 ID=cds-WP_001131446.1;Parent=gene-AD39_RS28945;Dbxref=GenBank:WP_001131446.1;Name=WP_001131446.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001131457.1;locus_tag=AD39_RS28945;product=hypothetical protein;protein_id=WP_001131446.1;transl_table=11 NZ_JJLH01000015.1 RefSeq pseudogene 123217 123561 . + . ID=gene-AD39_RS17475;Name=AD39_RS17475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS17475;old_locus_tag=AD39_1258;partial=true;pseudo=true;start_range=.,123217 NZ_JJLH01000015.1 Protein Homology CDS 123217 123561 . + 0 ID=cds-AD39_RS17475;Parent=gene-AD39_RS17475;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311542.2;locus_tag=AD39_RS17475;partial=true;product=autotransporter outer membrane beta-barrel domain-containing protein;pseudo=true;start_range=.,123217;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 123933 124199 . - . ID=gene-AD39_RS17470;Name=minE;gbkey=Gene;gene=minE;gene_biotype=protein_coding;locus_tag=AD39_RS17470;old_locus_tag=AD39_1259 NZ_JJLH01000015.1 Protein Homology CDS 123933 124199 . - 0 ID=cds-WP_001185665.1;Parent=gene-AD39_RS17470;Dbxref=GenBank:WP_001185665.1;Name=WP_001185665.1;Ontology_term=GO:0032955;gbkey=CDS;gene=minE;go_process=regulation of division septum assembly|0032955||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309695.1;locus_tag=AD39_RS17470;product=cell division topological specificity factor MinE;protein_id=WP_001185665.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 124203 125015 . - . ID=gene-AD39_RS17465;Name=minD;gbkey=Gene;gene=minD;gene_biotype=protein_coding;locus_tag=AD39_RS17465;old_locus_tag=AD39_1260 NZ_JJLH01000015.1 Protein Homology CDS 124203 125015 . - 0 ID=cds-WP_000101055.1;Parent=gene-AD39_RS17465;Dbxref=GenBank:WP_000101055.1;Name=WP_000101055.1;gbkey=CDS;gene=minD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020801817.1;locus_tag=AD39_RS17465;product=septum site-determining protein MinD;protein_id=WP_000101055.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 125039 125734 . - . ID=gene-AD39_RS17460;Name=minC;gbkey=Gene;gene=minC;gene_biotype=protein_coding;locus_tag=AD39_RS17460;old_locus_tag=AD39_1261 NZ_JJLH01000015.1 Protein Homology CDS 125039 125734 . - 0 ID=cds-WP_000072536.1;Parent=gene-AD39_RS17460;Dbxref=GenBank:WP_000072536.1;Name=WP_000072536.1;Ontology_term=GO:0000918,GO:1901891,GO:0004857;gbkey=CDS;gene=minC;go_function=enzyme inhibitor activity|0004857||IEA;go_process=division septum site selection|0000918||IEA,regulation of cell septum assembly|1901891||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309697.1;locus_tag=AD39_RS17460;product=septum site-determining protein MinC;protein_id=WP_000072536.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 126254 126622 . + . ID=gene-AD39_RS17455;Name=ycgJ;gbkey=Gene;gene=ycgJ;gene_biotype=protein_coding;locus_tag=AD39_RS17455;old_locus_tag=AD39_1262 NZ_JJLH01000015.1 Protein Homology CDS 126254 126622 . + 0 ID=cds-WP_001056831.1;Parent=gene-AD39_RS17455;Dbxref=GenBank:WP_001056831.1;Name=WP_001056831.1;gbkey=CDS;gene=ycgJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309698.1;locus_tag=AD39_RS17455;product=YcgJ family protein;protein_id=WP_001056831.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 126742 127143 . - . ID=gene-AD39_RS17450;Name=pliG;gbkey=Gene;gene=pliG;gene_biotype=protein_coding;locus_tag=AD39_RS17450;old_locus_tag=AD39_1263 NZ_JJLH01000015.1 Protein Homology CDS 126742 127143 . - 0 ID=cds-WP_000695223.1;Parent=gene-AD39_RS17450;Dbxref=GenBank:WP_000695223.1;Name=WP_000695223.1;gbkey=CDS;gene=pliG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309699.1;locus_tag=AD39_RS17450;product=g-type lysoyme inhibitor PliG;protein_id=WP_000695223.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 127385 127678 . + . ID=gene-AD39_RS17445;Name=AD39_RS17445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17445;old_locus_tag=AD39_1264 NZ_JJLH01000015.1 Protein Homology CDS 127385 127678 . + 0 ID=cds-WP_001297679.1;Parent=gene-AD39_RS17445;Dbxref=GenBank:WP_001297679.1;Name=WP_001297679.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309701.2;locus_tag=AD39_RS17445;product=YcgL domain-containing protein;protein_id=WP_001297679.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 127750 128409 . + . ID=gene-AD39_RS17440;Name=ycgM;gbkey=Gene;gene=ycgM;gene_biotype=protein_coding;locus_tag=AD39_RS17440;old_locus_tag=AD39_1265 NZ_JJLH01000015.1 Protein Homology CDS 127750 128409 . + 0 ID=cds-WP_000284277.1;Parent=gene-AD39_RS17440;Dbxref=GenBank:WP_000284277.1;Name=WP_000284277.1;Ontology_term=GO:0003824;gbkey=CDS;gene=ycgM;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309702.1;locus_tag=AD39_RS17440;product=fumarylacetoacetate hydrolase family protein;protein_id=WP_000284277.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 128501 128947 . + . ID=gene-AD39_RS17435;Name=ycgN;gbkey=Gene;gene=ycgN;gene_biotype=protein_coding;locus_tag=AD39_RS17435;old_locus_tag=AD39_1266 NZ_JJLH01000015.1 Protein Homology CDS 128501 128947 . + 0 ID=cds-WP_001306825.1;Parent=gene-AD39_RS17435;Dbxref=GenBank:WP_001306825.1;Name=WP_001306825.1;gbkey=CDS;gene=ycgN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309703.5;locus_tag=AD39_RS17435;product=YcgN family cysteine cluster protein;protein_id=WP_001306825.1;transl_table=11 NZ_JJLH01000015.1 RefSeq pseudogene 129154 130064 . - . ID=gene-AD39_RS28310;Name=hlyE;gbkey=Gene;gene=hlyE;gene_biotype=pseudogene;locus_tag=AD39_RS28310;pseudo=true NZ_JJLH01000015.1 Protein Homology CDS 129154 130064 . - 0 ID=cds-AD39_RS28310;Parent=gene-AD39_RS28310;Note=frameshifted;Ontology_term=GO:0044179,GO:0090729;gbkey=CDS;gene=hlyE;go_function=toxin activity|0090729||IEA;go_process=hemolysis in another organism|0044179||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415700.4;locus_tag=AD39_RS28310;product=hemolysin HlyE;pseudo=true;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 130437 130856 . + . ID=gene-AD39_RS17420;Name=umuD;gbkey=Gene;gene=umuD;gene_biotype=protein_coding;locus_tag=AD39_RS17420;old_locus_tag=AD39_1269 NZ_JJLH01000015.1 Protein Homology CDS 130437 130856 . + 0 ID=cds-WP_000897378.1;Parent=gene-AD39_RS17420;Dbxref=GenBank:WP_000897378.1;Name=WP_000897378.1;gbkey=CDS;gene=umuD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309705.1;locus_tag=AD39_RS17420;product=translesion error-prone DNA polymerase V autoproteolytic subunit;protein_id=WP_000897378.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 130856 132124 . + . ID=gene-AD39_RS17415;Name=umuC;gbkey=Gene;gene=umuC;gene_biotype=protein_coding;locus_tag=AD39_RS17415;old_locus_tag=AD39_1270 NZ_JJLH01000015.1 Protein Homology CDS 130856 132124 . + 0 ID=cds-WP_000457616.1;Parent=gene-AD39_RS17415;Dbxref=GenBank:WP_000457616.1;Name=WP_000457616.1;gbkey=CDS;gene=umuC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415702.1;locus_tag=AD39_RS17415;product=DNA polymerase V catalytic protein;protein_id=WP_000457616.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 132170 132700 . - . ID=gene-AD39_RS17410;Name=dsbB;gbkey=Gene;gene=dsbB;gene_biotype=protein_coding;locus_tag=AD39_RS17410;old_locus_tag=AD39_1271 NZ_JJLH01000015.1 Protein Homology CDS 132170 132700 . - 0 ID=cds-WP_000943459.1;Parent=gene-AD39_RS17410;Dbxref=GenBank:WP_000943459.1;Name=WP_000943459.1;Ontology_term=GO:0006457,GO:0015035,GO:0016020;gbkey=CDS;gene=dsbB;go_component=membrane|0016020||IEA;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309707.1;locus_tag=AD39_RS17410;product=disulfide bond formation protein DsbB;protein_id=WP_000943459.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 132846 134387 . - . ID=gene-AD39_RS17405;Name=nhaB;gbkey=Gene;gene=nhaB;gene_biotype=protein_coding;locus_tag=AD39_RS17405;old_locus_tag=AD39_1272 NZ_JJLH01000015.1 Protein Homology CDS 132846 134387 . - 0 ID=cds-WP_000406391.1;Parent=gene-AD39_RS17405;Dbxref=GenBank:WP_000406391.1;Name=WP_000406391.1;Ontology_term=GO:0006814,GO:0015385,GO:0016020;gbkey=CDS;gene=nhaB;go_component=membrane|0016020||IEA;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309708.1;locus_tag=AD39_RS17405;product=Na(+)/H(+) antiporter NhaB;protein_id=WP_000406391.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 134609 135328 . + . ID=gene-AD39_RS17400;Name=fadR;gbkey=Gene;gene=fadR;gene_biotype=protein_coding;locus_tag=AD39_RS17400;old_locus_tag=AD39_1273 NZ_JJLH01000015.1 Protein Homology CDS 134609 135328 . + 0 ID=cds-WP_000234823.1;Parent=gene-AD39_RS17400;Dbxref=GenBank:WP_000234823.1;Name=WP_000234823.1;Ontology_term=GO:0006355,GO:0019217,GO:0000062,GO:0003677,GO:0003700;gbkey=CDS;gene=fadR;go_function=fatty-acyl-CoA binding|0000062||IEA,DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,regulation of fatty acid metabolic process|0019217||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309709.1;locus_tag=AD39_RS17400;product=fatty acid metabolism transcriptional regulator FadR;protein_id=WP_000234823.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 135380 136912 . - . ID=gene-AD39_RS17395;Name=ycgB;gbkey=Gene;gene=ycgB;gene_biotype=protein_coding;locus_tag=AD39_RS17395;old_locus_tag=AD39_1274 NZ_JJLH01000015.1 Protein Homology CDS 135380 136912 . - 0 ID=cds-WP_000190855.1;Parent=gene-AD39_RS17395;Dbxref=GenBank:WP_000190855.1;Name=WP_000190855.1;gbkey=CDS;gene=ycgB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309710.1;locus_tag=AD39_RS17395;product=SpoVR family protein;protein_id=WP_000190855.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 137242 138540 . + . ID=gene-AD39_RS17390;Name=dadA;gbkey=Gene;gene=dadA;gene_biotype=protein_coding;locus_tag=AD39_RS17390;old_locus_tag=AD39_1275 NZ_JJLH01000015.1 Protein Homology CDS 137242 138540 . + 0 ID=cds-WP_001266908.1;Parent=gene-AD39_RS17390;Dbxref=GenBank:WP_001266908.1;Name=WP_001266908.1;gbkey=CDS;gene=dadA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309711.1;locus_tag=AD39_RS17390;product=D-amino acid dehydrogenase;protein_id=WP_001266908.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 138550 139620 . + . ID=gene-AD39_RS17385;Name=dadX;gbkey=Gene;gene=dadX;gene_biotype=protein_coding;locus_tag=AD39_RS17385;old_locus_tag=AD39_1276 NZ_JJLH01000015.1 Protein Homology CDS 138550 139620 . + 0 ID=cds-WP_000197840.1;Parent=gene-AD39_RS17385;Dbxref=GenBank:WP_000197840.1;Name=WP_000197840.1;Ontology_term=GO:0006522,GO:0008784;gbkey=CDS;gene=dadX;go_function=alanine racemase activity|0008784||IEA;go_process=alanine metabolic process|0006522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309712.2;locus_tag=AD39_RS17385;product=catabolic alanine racemase DadX;protein_id=WP_000197840.1;transl_table=11 NZ_JJLH01000015.1 RefSeq pseudogene 139931 140071 . + . ID=gene-AD39_RS30120;Name=AD39_RS30120;end_range=140071,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30120;partial=true;pseudo=true NZ_JJLH01000015.1 Protein Homology CDS 139931 140071 . + 0 ID=cds-AD39_RS30120;Parent=gene-AD39_RS30120;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=140071,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049075.1;locus_tag=AD39_RS30120;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 140006 141742 . - . ID=gene-AD39_RS17380;Name=cvrA;gbkey=Gene;gene=cvrA;gene_biotype=protein_coding;locus_tag=AD39_RS17380;old_locus_tag=AD39_1278 NZ_JJLH01000015.1 Protein Homology CDS 140006 141742 . - 0 ID=cds-WP_000340206.1;Parent=gene-AD39_RS17380;Dbxref=GenBank:WP_000340206.1;Name=WP_000340206.1;Ontology_term=GO:0006813,GO:0006884,GO:0055085,GO:0051139,GO:0016020;gbkey=CDS;gene=cvrA;go_component=membrane|0016020||IEA;go_function=metal cation:proton antiporter activity|0051139||IEA;go_process=potassium ion transport|0006813||IEA,cell volume homeostasis|0006884||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309713.2;locus_tag=AD39_RS17380;product=potassium/proton antiporter;protein_id=WP_000340206.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 141837 142751 . - . ID=gene-AD39_RS17375;Name=ldcA;gbkey=Gene;gene=ldcA;gene_biotype=protein_coding;locus_tag=AD39_RS17375;old_locus_tag=AD39_1279 NZ_JJLH01000015.1 Protein Homology CDS 141837 142751 . - 0 ID=cds-WP_000051580.1;Parent=gene-AD39_RS17375;Dbxref=GenBank:WP_000051580.1;Name=WP_000051580.1;gbkey=CDS;gene=ldcA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415710.1;locus_tag=AD39_RS17375;product=muramoyltetrapeptide carboxypeptidase;protein_id=WP_000051580.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 142851 143462 . + . ID=gene-AD39_RS17370;Name=emtA;gbkey=Gene;gene=emtA;gene_biotype=protein_coding;locus_tag=AD39_RS17370;old_locus_tag=AD39_1280 NZ_JJLH01000015.1 Protein Homology CDS 142851 143462 . + 0 ID=cds-WP_001301104.1;Parent=gene-AD39_RS17370;Dbxref=GenBank:WP_001301104.1;Name=WP_001301104.1;gbkey=CDS;gene=emtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415711.2;locus_tag=AD39_RS17370;product=membrane-bound lytic murein transglycosylase EmtA;protein_id=WP_001301104.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 143464 144198 . - . ID=gene-AD39_RS17365;Name=ycgR;gbkey=Gene;gene=ycgR;gene_biotype=protein_coding;locus_tag=AD39_RS17365;old_locus_tag=AD39_1281 NZ_JJLH01000015.1 Protein Homology CDS 143464 144198 . - 0 ID=cds-WP_000020161.1;Parent=gene-AD39_RS17365;Dbxref=GenBank:WP_000020161.1;Name=WP_000020161.1;Ontology_term=GO:0071945,GO:0035438;gbkey=CDS;gene=ycgR;go_function=cyclic-di-GMP binding|0035438||IEA;go_process=regulation of bacterial-type flagellum-dependent cell motility by regulation of motor speed|0071945||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415712.1;locus_tag=AD39_RS17365;product=flagellar brake protein YcgR;protein_id=WP_000020161.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 144399 144653 . + . ID=gene-AD39_RS17360;Name=ymgE;gbkey=Gene;gene=ymgE;gene_biotype=protein_coding;locus_tag=AD39_RS17360;old_locus_tag=AD39_1282 NZ_JJLH01000015.1 Protein Homology CDS 144399 144653 . + 0 ID=cds-WP_000511313.1;Parent=gene-AD39_RS17360;Dbxref=GenBank:WP_000511313.1;Name=WP_000511313.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ymgE;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309719.1;locus_tag=AD39_RS17360;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_000511313.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 144831 145271 . + . ID=gene-AD39_RS17355;Name=ycgY;gbkey=Gene;gene=ycgY;gene_biotype=protein_coding;locus_tag=AD39_RS17355;old_locus_tag=AD39_1283 NZ_JJLH01000015.1 Protein Homology CDS 144831 145271 . + 0 ID=cds-WP_000615067.1;Parent=gene-AD39_RS17355;Dbxref=GenBank:WP_000615067.1;Name=WP_000615067.1;gbkey=CDS;gene=ycgY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415714.1;locus_tag=AD39_RS17355;product=protein YcgY;protein_id=WP_000615067.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 145350 147047 . - . ID=gene-AD39_RS17350;Name=treA;gbkey=Gene;gene=treA;gene_biotype=protein_coding;locus_tag=AD39_RS17350;old_locus_tag=AD39_1284 NZ_JJLH01000015.1 Protein Homology CDS 145350 147047 . - 0 ID=cds-WP_000841709.1;Parent=gene-AD39_RS17350;Dbxref=GenBank:WP_000841709.1;Name=WP_000841709.1;gbkey=CDS;gene=treA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415715.1;locus_tag=AD39_RS17350;product=alpha%2Calpha-trehalase;protein_id=WP_000841709.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 147367 148785 . - . ID=gene-AD39_RS17345;Name=dhaM;gbkey=Gene;gene=dhaM;gene_biotype=protein_coding;locus_tag=AD39_RS17345;old_locus_tag=AD39_1286 NZ_JJLH01000015.1 Protein Homology CDS 147367 148785 . - 0 ID=cds-WP_001297541.1;Parent=gene-AD39_RS17345;Dbxref=GenBank:WP_001297541.1;Name=WP_001297541.1;Ontology_term=GO:0009401,GO:0016310,GO:0019563,GO:0047324,GO:0016020;gbkey=CDS;gene=dhaM;go_component=membrane|0016020||IEA;go_function=phosphoenolpyruvate-glycerone phosphotransferase activity|0047324||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA,glycerol catabolic process|0019563||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415716.4;locus_tag=AD39_RS17345;product=dihydroxyacetone kinase phosphoryl donor subunit DhaM;protein_id=WP_001297541.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 148796 149428 . - . ID=gene-AD39_RS17340;Name=dhaL;gbkey=Gene;gene=dhaL;gene_biotype=protein_coding;locus_tag=AD39_RS17340;old_locus_tag=AD39_1287 NZ_JJLH01000015.1 Protein Homology CDS 148796 149428 . - 0 ID=cds-WP_032283159.1;Parent=gene-AD39_RS17340;Dbxref=GenBank:WP_032283159.1;Name=WP_032283159.1;Ontology_term=GO:0006071,GO:0047324;gbkey=CDS;gene=dhaL;go_function=phosphoenolpyruvate-glycerone phosphotransferase activity|0047324||IEA;go_process=glycerol metabolic process|0006071||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415717.1;locus_tag=AD39_RS17340;product=dihydroxyacetone kinase subunit DhaL;protein_id=WP_032283159.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 149439 150509 . - . ID=gene-AD39_RS17335;Name=dhaK;gbkey=Gene;gene=dhaK;gene_biotype=protein_coding;locus_tag=AD39_RS17335;old_locus_tag=AD39_1288 NZ_JJLH01000015.1 Protein Homology CDS 149439 150509 . - 0 ID=cds-WP_000733707.1;Parent=gene-AD39_RS17335;Dbxref=GenBank:WP_000733707.1;Name=WP_000733707.1;Ontology_term=GO:0006071,GO:0004371;gbkey=CDS;gene=dhaK;go_function=glycerone kinase activity|0004371||IEA;go_process=glycerol metabolic process|0006071||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415718.6;locus_tag=AD39_RS17335;product=dihydroxyacetone kinase subunit DhaK;protein_id=WP_000733707.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 150737 152656 . + . ID=gene-AD39_RS17330;Name=dhaR;gbkey=Gene;gene=dhaR;gene_biotype=protein_coding;locus_tag=AD39_RS17330;old_locus_tag=AD39_1289 NZ_JJLH01000015.1 Protein Homology CDS 150737 152656 . + 0 ID=cds-WP_001385778.1;Parent=gene-AD39_RS17330;Dbxref=GenBank:WP_001385778.1;Name=WP_001385778.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134,GO:0043565;gbkey=CDS;gene=dhaR;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415719.2;locus_tag=AD39_RS17330;product=dihydroxyacetone kinase operon transcriptional regulator DhaR;protein_id=WP_001385778.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 152756 155641 . - . ID=gene-AD39_RS17325;Name=ycgV;gbkey=Gene;gene=ycgV;gene_biotype=protein_coding;locus_tag=AD39_RS17325;old_locus_tag=AD39_1290 NZ_JJLH01000015.1 Protein Homology CDS 152756 155641 . - 0 ID=cds-WP_032283161.1;Parent=gene-AD39_RS17325;Dbxref=GenBank:WP_032283161.1;Name=WP_032283161.1;Ontology_term=GO:0019867;gbkey=CDS;gene=ycgV;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415720.1;locus_tag=AD39_RS17325;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_032283161.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 156410 157501 . - . ID=gene-AD39_RS17315;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=AD39_RS17315;old_locus_tag=AD39_1292 NZ_JJLH01000015.1 Protein Homology CDS 156410 157501 . - 0 ID=cds-WP_000505874.1;Parent=gene-AD39_RS17315;Dbxref=GenBank:WP_000505874.1;Name=WP_000505874.1;Ontology_term=GO:0005524,GO:0005525,GO:0016887;gbkey=CDS;gene=ychF;go_function=ATP binding|0005524||IEA,GTP binding|0005525||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001538644.1;locus_tag=AD39_RS17315;product=redox-regulated ATPase YchF;protein_id=WP_000505874.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 157618 158202 . - . ID=gene-AD39_RS17310;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;locus_tag=AD39_RS17310;old_locus_tag=AD39_1293 NZ_JJLH01000015.1 Protein Homology CDS 157618 158202 . - 0 ID=cds-WP_000152933.1;Parent=gene-AD39_RS17310;Dbxref=GenBank:WP_000152933.1;Name=WP_000152933.1;Ontology_term=GO:0004045;gbkey=CDS;gene=pth;go_function=peptidyl-tRNA hydrolase activity|0004045||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002910438.1;locus_tag=AD39_RS17310;product=aminoacyl-tRNA hydrolase;protein_id=WP_000152933.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 158480 158758 . + . ID=gene-AD39_RS17305;Name=ychH;gbkey=Gene;gene=ychH;gene_biotype=protein_coding;locus_tag=AD39_RS17305;old_locus_tag=AD39_1294 NZ_JJLH01000015.1 Protein Homology CDS 158480 158758 . + 0 ID=cds-WP_000823885.1;Parent=gene-AD39_RS17305;Dbxref=GenBank:WP_000823885.1;Name=WP_000823885.1;gbkey=CDS;gene=ychH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309737.1;locus_tag=AD39_RS17305;product=stress-induced protein YchH;protein_id=WP_000823885.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 158813 160492 . - . ID=gene-AD39_RS17300;Name=dauA;gbkey=Gene;gene=dauA;gene_biotype=protein_coding;locus_tag=AD39_RS17300;old_locus_tag=AD39_1295 NZ_JJLH01000015.1 Protein Homology CDS 158813 160492 . - 0 ID=cds-WP_001033352.1;Parent=gene-AD39_RS17300;Dbxref=GenBank:WP_001033352.1;Name=WP_001033352.1;gbkey=CDS;gene=dauA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415724.2;locus_tag=AD39_RS17300;product=C4-dicarboxylic acid transporter DauA;protein_id=WP_001033352.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 160617 161564 . - . ID=gene-AD39_RS17295;Name=prs;gbkey=Gene;gene=prs;gene_biotype=protein_coding;locus_tag=AD39_RS17295;old_locus_tag=AD39_1296 NZ_JJLH01000015.1 Protein Homology CDS 160617 161564 . - 0 ID=cds-WP_001298109.1;Parent=gene-AD39_RS17295;Dbxref=GenBank:WP_001298109.1;Name=WP_001298109.1;gbkey=CDS;gene=prs;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002910407.1;locus_tag=AD39_RS17295;product=ribose-phosphate diphosphokinase;protein_id=WP_001298109.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 161715 162566 . - . ID=gene-AD39_RS17290;Name=ispE;gbkey=Gene;gene=ispE;gene_biotype=protein_coding;locus_tag=AD39_RS17290;old_locus_tag=AD39_1297 NZ_JJLH01000015.1 Protein Homology CDS 161715 162566 . - 0 ID=cds-WP_001260314.1;Parent=gene-AD39_RS17290;Dbxref=GenBank:WP_001260314.1;Name=WP_001260314.1;Ontology_term=GO:0016114,GO:0050515;gbkey=CDS;gene=ispE;go_function=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity|0050515||IEA;go_process=terpenoid biosynthetic process|0016114||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707117.1;locus_tag=AD39_RS17290;product=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase;protein_id=WP_001260314.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 162566 163189 . - . ID=gene-AD39_RS17285;Name=lolB;gbkey=Gene;gene=lolB;gene_biotype=protein_coding;locus_tag=AD39_RS17285;old_locus_tag=AD39_1298 NZ_JJLH01000015.1 Protein Homology CDS 162566 163189 . - 0 ID=cds-WP_001130692.1;Parent=gene-AD39_RS17285;Dbxref=GenBank:WP_001130692.1;Name=WP_001130692.1;Ontology_term=GO:0015031,GO:0009279;gbkey=CDS;gene=lolB;go_component=cell outer membrane|0009279||IEA;go_process=protein transport|0015031||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309741.1;locus_tag=AD39_RS17285;product=lipoprotein insertase outer membrane protein LolB;protein_id=WP_001130692.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 163403 164659 . + . ID=gene-AD39_RS17280;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;locus_tag=AD39_RS17280;old_locus_tag=AD39_1299 NZ_JJLH01000015.1 Protein Homology CDS 163403 164659 . + 0 ID=cds-WP_000173200.1;Parent=gene-AD39_RS17280;Dbxref=GenBank:WP_000173200.1;Name=WP_000173200.1;Ontology_term=GO:0008883,GO:0050661;gbkey=CDS;gene=hemA;go_function=glutamyl-tRNA reductase activity|0008883||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_041689438.1;locus_tag=AD39_RS17280;product=glutamyl-tRNA reductase;protein_id=WP_000173200.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 164701 165783 . + . ID=gene-AD39_RS17275;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=AD39_RS17275;old_locus_tag=AD39_1300 NZ_JJLH01000015.1 Protein Homology CDS 164701 165783 . + 0 ID=cds-WP_000804726.1;Parent=gene-AD39_RS17275;Dbxref=GenBank:WP_000804726.1;Name=WP_000804726.1;Ontology_term=GO:0006415,GO:0003747;gbkey=CDS;gene=prfA;go_function=translation release factor activity|0003747||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012132158.1;locus_tag=AD39_RS17275;product=peptide chain release factor 1;protein_id=WP_000804726.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 165783 166616 . + . ID=gene-AD39_RS17270;Name=prmC;gbkey=Gene;gene=prmC;gene_biotype=protein_coding;locus_tag=AD39_RS17270;old_locus_tag=AD39_1301 NZ_JJLH01000015.1 Protein Homology CDS 165783 166616 . + 0 ID=cds-WP_000456571.1;Parent=gene-AD39_RS17270;Dbxref=GenBank:WP_000456571.1;Name=WP_000456571.1;Ontology_term=GO:0006412,GO:0018364,GO:0008757;gbkey=CDS;gene=prmC;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=translation|0006412||IEA,peptidyl-glutamine methylation|0018364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415730.1;locus_tag=AD39_RS17270;product=peptide chain release factor N(5)-glutamine methyltransferase;protein_id=WP_000456571.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 166613 167005 . + . ID=gene-AD39_RS17265;Name=sirB2;gbkey=Gene;gene=sirB2;gene_biotype=protein_coding;locus_tag=AD39_RS17265;old_locus_tag=AD39_1302 NZ_JJLH01000015.1 Protein Homology CDS 166613 167005 . + 0 ID=cds-WP_032283162.1;Parent=gene-AD39_RS17265;Dbxref=GenBank:WP_032283162.1;Name=WP_032283162.1;gbkey=CDS;gene=sirB2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707122.1;locus_tag=AD39_RS17265;product=invasion regulator SirB2;protein_id=WP_032283162.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 167009 167818 . + . ID=gene-AD39_RS17260;Name=sirB1;gbkey=Gene;gene=sirB1;gene_biotype=protein_coding;locus_tag=AD39_RS17260;old_locus_tag=AD39_1303 NZ_JJLH01000015.1 Protein Homology CDS 167009 167818 . + 0 ID=cds-WP_001471472.1;Parent=gene-AD39_RS17260;Dbxref=GenBank:WP_001471472.1;Name=WP_001471472.1;gbkey=CDS;gene=sirB1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309746.1;locus_tag=AD39_RS17260;product=invasion regulator SirB1;protein_id=WP_001471472.1;transl_table=11 NZ_JJLH01000015.1 RefSeq gene 167854 168708 . + . ID=gene-AD39_RS17255;Name=kdsA;gbkey=Gene;gene=kdsA;gene_biotype=protein_coding;locus_tag=AD39_RS17255;old_locus_tag=AD39_1304 NZ_JJLH01000015.1 Protein Homology CDS 167854 168708 . + 0 ID=cds-WP_000811065.1;Parent=gene-AD39_RS17255;Dbxref=GenBank:WP_000811065.1;Name=WP_000811065.1;Ontology_term=GO:0008676;gbkey=CDS;gene=kdsA;go_function=3-deoxy-8-phosphooctulonate synthase activity|0008676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126202.1;locus_tag=AD39_RS17255;product=3-deoxy-8-phosphooctulonate synthase;protein_id=WP_000811065.1;transl_table=11 ##sequence-region NZ_JJLH01000016.1 1 1076 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000016.1 RefSeq region 1 1076 . + . ID=NZ_JJLH01000016.1:1..1076;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000016.1 RefSeq gene 1 196 . + . ID=gene-AD39_RS29565;Name=AD39_RS29565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29565;partial=true;start_range=.,1 NZ_JJLH01000016.1 GeneMarkS-2+ CDS 1 196 . + 1 ID=cds-WP_050440048.1;Parent=gene-AD39_RS29565;Dbxref=GenBank:WP_050440048.1;Name=WP_050440048.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS29565;partial=true;product=hypothetical protein;protein_id=WP_050440048.1;start_range=.,1;transl_table=11 NZ_JJLH01000016.1 RefSeq gene 211 318 . - . ID=gene-AD39_RS17250;Name=AD39_RS17250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17250;old_locus_tag=AD39_1305 NZ_JJLH01000016.1 Protein Homology CDS 211 318 . - 0 ID=cds-WP_000170965.1;Parent=gene-AD39_RS17250;Dbxref=GenBank:WP_000170965.1;Name=WP_000170965.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_025297.1;locus_tag=AD39_RS17250;product=type I toxin-antitoxin system toxin Ldr family protein;protein_id=WP_000170965.1;transl_table=11 NZ_JJLH01000016.1 RefSeq pseudogene 515 1076 . - . ID=gene-AD39_RS0123780;Name=AD39_RS0123780;end_range=1076,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0123780;old_locus_tag=AD39_1306;partial=true;pseudo=true NZ_JJLH01000016.1 Protein Homology CDS 515 1076 . - 1 ID=cds-AD39_RS0123780;Parent=gene-AD39_RS0123780;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;Ontology_term=GO:0006313,GO:0004803;end_range=1076,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012767703.1;locus_tag=AD39_RS0123780;partial=true;product=IS3-like element IS150 family transposase;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000017.1 1 2409 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000017.1 RefSeq region 1 2409 . + . ID=NZ_JJLH01000017.1:1..2409;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000017.1 RefSeq gene 1 584 . + . ID=gene-AD39_RS17245;Name=sirB1;gbkey=Gene;gene=sirB1;gene_biotype=protein_coding;locus_tag=AD39_RS17245;old_locus_tag=AD39_1307;partial=true;start_range=.,1 NZ_JJLH01000017.1 Protein Homology CDS 1 584 . + 2 ID=cds-WP_032287527.1;Parent=gene-AD39_RS17245;Dbxref=GenBank:WP_032287527.1;Name=WP_032287527.1;gbkey=CDS;gene=sirB1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309746.1;locus_tag=AD39_RS17245;partial=true;product=invasion regulator SirB1;protein_id=WP_032287527.1;start_range=.,1;transl_table=11 NZ_JJLH01000017.1 RefSeq gene 620 1474 . + . ID=gene-AD39_RS17240;Name=kdsA;gbkey=Gene;gene=kdsA;gene_biotype=protein_coding;locus_tag=AD39_RS17240;old_locus_tag=AD39_1308 NZ_JJLH01000017.1 Protein Homology CDS 620 1474 . + 0 ID=cds-WP_000811065.1-2;Parent=gene-AD39_RS17240;Dbxref=GenBank:WP_000811065.1;Name=WP_000811065.1;Ontology_term=GO:0008676;gbkey=CDS;gene=kdsA;go_function=3-deoxy-8-phosphooctulonate synthase activity|0008676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126202.1;locus_tag=AD39_RS17240;product=3-deoxy-8-phosphooctulonate synthase;protein_id=WP_000811065.1;transl_table=11 NZ_JJLH01000017.1 RefSeq gene 1623 1730 . - . ID=gene-AD39_RS17235;Name=AD39_RS17235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17235;old_locus_tag=AD39_1309 NZ_JJLH01000017.1 Protein Homology CDS 1623 1730 . - 0 ID=cds-WP_000170954.1;Parent=gene-AD39_RS17235;Dbxref=GenBank:WP_000170954.1;Name=WP_000170954.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502614.1;locus_tag=AD39_RS17235;product=type I toxin-antitoxin system toxin Ldr family protein;protein_id=WP_000170954.1;transl_table=11 NZ_JJLH01000017.1 RefSeq gene 2158 2265 . - . ID=gene-AD39_RS28955;Name=AD39_RS28955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28955 NZ_JJLH01000017.1 Protein Homology CDS 2158 2265 . - 0 ID=cds-WP_000170926.1;Parent=gene-AD39_RS28955;Dbxref=GenBank:WP_000170926.1;Name=WP_000170926.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502614.1;locus_tag=AD39_RS28955;product=type I toxin-antitoxin system toxin Ldr family protein;protein_id=WP_000170926.1;transl_table=11 ##sequence-region NZ_JJLH01000018.1 1 94705 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000018.1 RefSeq region 1 94705 . + . ID=NZ_JJLH01000018.1:1..94705;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000018.1 RefSeq pseudogene 1 1183 . + . ID=gene-AD39_RS17220;Name=AD39_RS17220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS17220;old_locus_tag=AD39_1313;partial=true;pseudo=true;start_range=.,1 NZ_JJLH01000018.1 Protein Homology CDS 1 1183 . + 0 ID=cds-AD39_RS17220;Parent=gene-AD39_RS17220;Note=frameshifted%3B incomplete%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611465.1;locus_tag=AD39_RS17220;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,1;transl_table=11 NZ_JJLH01000018.1 cmsearch sequence_feature 261 377 . + . ID=id-AD39_RS17220;Dbxref=RFAM:RF01497;Note=AL1L pseudoknot;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS17220;pseudo=true NZ_JJLH01000018.1 RefSeq pseudogene 1297 1620 . - . ID=gene-AD39_RS29650;Name=AD39_RS29650;end_range=1620,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29650;partial=true;pseudo=true NZ_JJLH01000018.1 Protein Homology CDS 1297 1620 . - 0 ID=cds-AD39_RS29650;Parent=gene-AD39_RS29650;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=1620,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015869530.1;locus_tag=AD39_RS29650;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 1685 2224 . - . ID=gene-AD39_RS26180;Name=AD39_RS26180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS26180 NZ_JJLH01000018.1 Protein Homology CDS 1685 2224 . - 0 ID=cds-WP_011666517.1;Parent=gene-AD39_RS26180;Dbxref=GenBank:WP_011666517.1;Name=WP_011666517.1;Ontology_term=GO:0008299,GO:0004452;gbkey=CDS;go_function=isopentenyl-diphosphate delta-isomerase activity|0004452||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001387337.1;locus_tag=AD39_RS26180;product=isopentenyl-diphosphate Delta-isomerase;protein_id=WP_011666517.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 2234 3256 . - . ID=gene-AD39_RS17215;Name=AD39_RS17215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17215;old_locus_tag=AD39_1315 NZ_JJLH01000018.1 Protein Homology CDS 2234 3256 . - 0 ID=cds-WP_032283732.1;Parent=gene-AD39_RS17215;Dbxref=GenBank:WP_032283732.1;Name=WP_032283732.1;Ontology_term=GO:0008299,GO:0004659,GO:0046872;gbkey=CDS;go_function=prenyltransferase activity|0004659||IEA,metal ion binding|0046872||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001403359.1;locus_tag=AD39_RS17215;product=class 1 isoprenoid biosynthesis enzyme;protein_id=WP_032283732.1;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 3504 3989 . + . ID=gene-AD39_RS0123800;Name=AD39_RS0123800;end_range=3989,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0123800;old_locus_tag=AD39_1316;partial=true;pseudo=true NZ_JJLH01000018.1 Protein Homology CDS 3504 3989 . + 0 ID=cds-AD39_RS0123800;Parent=gene-AD39_RS0123800;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=3989,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612066.1;locus_tag=AD39_RS0123800;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 4081 4374 . + . ID=gene-AD39_RS17210;Name=AD39_RS17210;end_range=4374,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS17210;old_locus_tag=AD39_1317;partial=true;pseudo=true NZ_JJLH01000018.1 Protein Homology CDS 4081 4374 . + 0 ID=cds-AD39_RS17210;Parent=gene-AD39_RS17210;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=4374,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612175.1;locus_tag=AD39_RS17210;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 4968 5318 . + . ID=gene-AD39_RS0123805;Name=aap;gbkey=Gene;gene=aap;gene_biotype=protein_coding;locus_tag=AD39_RS0123805 NZ_JJLH01000018.1 Protein Homology CDS 4968 5318 . + 0 ID=cds-WP_032283735.1;Parent=gene-AD39_RS0123805;Dbxref=GenBank:WP_032283735.1;Name=WP_032283735.1;gbkey=CDS;gene=aap;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000721278.1;locus_tag=AD39_RS0123805;product=dispersin Aap;protein_id=WP_032283735.1;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 5441 6173 . - . ID=gene-AD39_RS0123810;Name=AD39_RS0123810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0123810;partial=true;pseudo=true;start_range=.,5441 NZ_JJLH01000018.1 Protein Homology CDS 5441 6173 . - 0 ID=cds-AD39_RS0123810;Parent=gene-AD39_RS0123810;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013747467.1;locus_tag=AD39_RS0123810;partial=true;product=IS91 family transposase;pseudo=true;start_range=.,5441;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 6476 6559 . - . ID=gene-AD39_RS30125;Name=AD39_RS30125;end_range=6559,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30125;partial=true;pseudo=true;start_range=.,6476 NZ_JJLH01000018.1 Protein Homology CDS 6476 6559 . - 0 ID=cds-AD39_RS30125;Parent=gene-AD39_RS30125;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=6559,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001610315.1;locus_tag=AD39_RS30125;partial=true;product=colicin-Ia domain protein;pseudo=true;start_range=.,6476;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 6573 7516 . - . ID=gene-AD39_RS17205;Name=AD39_RS17205;end_range=7516,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS17205;old_locus_tag=AD39_1321;partial=true;pseudo=true NZ_JJLH01000018.1 Protein Homology CDS 6573 7516 . - 0 ID=cds-AD39_RS17205;Parent=gene-AD39_RS17205;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;end_range=7516,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611435.1;locus_tag=AD39_RS17205;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 7518 8402 . + . ID=gene-AD39_RS0123820;Name=istA;gbkey=Gene;gene=istA;gene_biotype=pseudogene;locus_tag=AD39_RS0123820;old_locus_tag=AD39_1322;partial=true;pseudo=true;start_range=.,7518 NZ_JJLH01000018.1 Protein Homology CDS 7518 8402 . + 0 ID=cds-AD39_RS0123820;Parent=gene-AD39_RS0123820;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;gene=istA;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000627495.1;locus_tag=AD39_RS0123820;partial=true;product=IS21-like element IS100 family transposase;pseudo=true;start_range=.,7518;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 8399 8668 . + . ID=gene-AD39_RS17200;Name=AD39_RS17200;end_range=8668,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS17200;old_locus_tag=AD39_1323;partial=true;pseudo=true NZ_JJLH01000018.1 Protein Homology CDS 8399 8668 . + 0 ID=cds-AD39_RS17200;Parent=gene-AD39_RS17200;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0005524;end_range=8668,.;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858162.1;locus_tag=AD39_RS17200;partial=true;product=ATP-binding protein;pseudo=true;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 8874 9161 . - . ID=gene-AD39_RS17195;Name=AD39_RS17195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17195;old_locus_tag=AD39_1324 NZ_JJLH01000018.1 Protein Homology CDS 8874 9161 . - 0 ID=cds-WP_000222766.1;Parent=gene-AD39_RS17195;Dbxref=GenBank:WP_000222766.1;Name=WP_000222766.1;Ontology_term=GO:0017148,GO:0004521,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=RNA endonuclease activity|0004521||IEA;go_process=negative regulation of translation|0017148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020317119.1;locus_tag=AD39_RS17195;product=type II toxin-antitoxin system RelE family toxin;protein_id=WP_000222766.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 9158 9409 . - . ID=gene-AD39_RS0123825;Name=AD39_RS0123825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123825 NZ_JJLH01000018.1 Protein Homology CDS 9158 9409 . - 0 ID=cds-WP_001132900.1;Parent=gene-AD39_RS0123825;Dbxref=GenBank:WP_001132900.1;Name=WP_001132900.1;Ontology_term=GO:0006355,GO:0045927,GO:0003677,GO:0097351,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=DNA binding|0003677||IEA,toxin sequestering activity|0097351||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,positive regulation of growth|0045927||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001595120.1;locus_tag=AD39_RS0123825;product=type II toxin-antitoxin system Phd/YefM family antitoxin;protein_id=WP_001132900.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 9482 9673 . - . ID=gene-AD39_RS17190;Name=AD39_RS17190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17190;old_locus_tag=AD39_1326 NZ_JJLH01000018.1 Protein Homology CDS 9482 9673 . - 0 ID=cds-WP_000829597.1;Parent=gene-AD39_RS17190;Dbxref=GenBank:WP_000829597.1;Name=WP_000829597.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000841011.1;locus_tag=AD39_RS17190;product=hypothetical protein;protein_id=WP_000829597.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 10375 11232 . - . ID=gene-AD39_RS17185;Name=repA;gbkey=Gene;gene=repA;gene_biotype=protein_coding;locus_tag=AD39_RS17185;old_locus_tag=AD39_1327 NZ_JJLH01000018.1 Protein Homology CDS 10375 11232 . - 0 ID=cds-WP_032283780.1;Parent=gene-AD39_RS17185;Dbxref=GenBank:WP_032283780.1;Name=WP_032283780.1;Ontology_term=GO:0006276;gbkey=CDS;gene=repA;go_process=plasmid maintenance|0006276||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_052675.1;locus_tag=AD39_RS17185;product=incFII family plasmid replication initiator RepA;protein_id=WP_032283780.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 11225 11299 . - . ID=gene-AD39_RS0123830;Name=tap;gbkey=Gene;gene=tap;gene_biotype=protein_coding;locus_tag=AD39_RS0123830 NZ_JJLH01000018.1 Protein Homology CDS 11225 11299 . - 0 ID=cds-WP_001365705.1;Parent=gene-AD39_RS0123830;Dbxref=GenBank:WP_001365705.1;Name=WP_001365705.1;Ontology_term=GO:0006276,GO:0031556;gbkey=CDS;gene=tap;go_process=plasmid maintenance|0006276||IEA,transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001370046.1;locus_tag=AD39_RS0123830;product=RepA leader peptide Tap;protein_id=WP_001365705.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 11524 11784 . - . ID=gene-AD39_RS0123835;Name=AD39_RS0123835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123835;old_locus_tag=AD39_1328 NZ_JJLH01000018.1 Protein Homology CDS 11524 11784 . - 0 ID=cds-WP_000083819.1;Parent=gene-AD39_RS0123835;Dbxref=GenBank:WP_000083819.1;Name=WP_000083819.1;Ontology_term=GO:0006276;gbkey=CDS;go_process=plasmid maintenance|0006276||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858391.1;locus_tag=AD39_RS0123835;product=replication regulatory protein RepA;protein_id=WP_000083819.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 12024 12614 . - . ID=gene-AD39_RS17180;Name=AD39_RS17180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17180;old_locus_tag=AD39_1329 NZ_JJLH01000018.1 Protein Homology CDS 12024 12614 . - 0 ID=cds-WP_000766812.1;Parent=gene-AD39_RS17180;Dbxref=GenBank:WP_000766812.1;Name=WP_000766812.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858390.1;locus_tag=AD39_RS17180;product=DUF2726 domain-containing protein;protein_id=WP_000766812.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 12652 12861 . - . ID=gene-AD39_RS0123840;Name=hha;gbkey=Gene;gene=hha;gene_biotype=protein_coding;locus_tag=AD39_RS0123840 NZ_JJLH01000018.1 Protein Homology CDS 12652 12861 . - 0 ID=cds-WP_001333231.1;Parent=gene-AD39_RS0123840;Dbxref=GenBank:WP_001333231.1;Name=WP_001333231.1;gbkey=CDS;gene=hha;inference=COORDINATES: similar to AA sequence:RefSeq:NP_958726.1;locus_tag=AD39_RS0123840;product=hemolysin expression modulator Hha;protein_id=WP_001333231.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 12907 13368 . - . ID=gene-AD39_RS17175;Name=AD39_RS17175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17175;old_locus_tag=AD39_1331 NZ_JJLH01000018.1 Protein Homology CDS 12907 13368 . - 0 ID=cds-WP_032283779.1;Parent=gene-AD39_RS17175;Dbxref=GenBank:WP_032283779.1;Name=WP_032283779.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_052672.1;locus_tag=AD39_RS17175;product=thermonuclease family protein;protein_id=WP_032283779.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 13615 13827 . - . ID=gene-AD39_RS17170;Name=AD39_RS17170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17170;old_locus_tag=AD39_1332 NZ_JJLH01000018.1 Protein Homology CDS 13615 13827 . - 0 ID=cds-WP_001301409.1;Parent=gene-AD39_RS17170;Dbxref=GenBank:WP_001301409.1;Name=WP_001301409.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858385.1;locus_tag=AD39_RS17170;product=ANR family transcriptional regulator;protein_id=WP_001301409.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 13959 14519 . - . ID=gene-AD39_RS17165;Name=AD39_RS17165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17165;old_locus_tag=AD39_1333 NZ_JJLH01000018.1 Protein Homology CDS 13959 14519 . - 0 ID=cds-WP_011666502.1;Parent=gene-AD39_RS17165;Dbxref=GenBank:WP_011666502.1;Name=WP_011666502.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_052671.1;locus_tag=AD39_RS17165;product=fertility inhibition protein FinO;protein_id=WP_011666502.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 14574 15320 . - . ID=gene-AD39_RS17160;Name=traX;gbkey=Gene;gene=traX;gene_biotype=protein_coding;locus_tag=AD39_RS17160;old_locus_tag=AD39_1334 NZ_JJLH01000018.1 Protein Homology CDS 14574 15320 . - 0 ID=cds-WP_032283778.1;Parent=gene-AD39_RS17160;Dbxref=GenBank:WP_032283778.1;Name=WP_032283778.1;gbkey=CDS;gene=traX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858383.2;locus_tag=AD39_RS17160;product=conjugal transfer pilus acetylase TraX;protein_id=WP_032283778.1;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 15340 16725 . - . ID=gene-AD39_RS30130;Name=AD39_RS30130;end_range=16725,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30130;partial=true;pseudo=true NZ_JJLH01000018.1 Protein Homology CDS 15340 16725 . - 0 ID=cds-AD39_RS30130;Parent=gene-AD39_RS30130;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0003677,GO:0003678,GO:0005524,GO:0016818;end_range=16725,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_490592.1;locus_tag=AD39_RS30130;partial=true;product=conjugative transfer relaxase/helicase TraI domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 16978 17850 . - . ID=gene-AD39_RS30135;Name=mobF;gbkey=Gene;gene=mobF;gene_biotype=pseudogene;locus_tag=AD39_RS30135;partial=true;pseudo=true;start_range=.,16978 NZ_JJLH01000018.1 Protein Homology CDS 16978 17850 . - 0 ID=cds-AD39_RS30135;Parent=gene-AD39_RS30135;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0003677;gbkey=CDS;gene=mobF;go_function=DNA binding|0003677||IEA;inference=COORDINATES: protein motif:HMM:NF041492.1;locus_tag=AD39_RS30135;partial=true;product=MobF family relaxase;pseudo=true;start_range=.,16978;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 17911 18138 . + . ID=gene-AD39_RS17150;Name=vapB;gbkey=Gene;gene=vapB;gene_biotype=protein_coding;locus_tag=AD39_RS17150;old_locus_tag=AD39_1336 NZ_JJLH01000018.1 Protein Homology CDS 17911 18138 . + 0 ID=cds-WP_000450520.1;Parent=gene-AD39_RS17150;Dbxref=GenBank:WP_000450520.1;Name=WP_000450520.1;gbkey=CDS;gene=vapB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858379.1;locus_tag=AD39_RS17150;product=toxin-antitoxin system antitoxin VapB;protein_id=WP_000450520.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 18138 18536 . + . ID=gene-AD39_RS17145;Name=vapC;gbkey=Gene;gene=vapC;gene_biotype=protein_coding;locus_tag=AD39_RS17145;old_locus_tag=AD39_1337 NZ_JJLH01000018.1 Protein Homology CDS 18138 18536 . + 0 ID=cds-WP_000911313.1;Parent=gene-AD39_RS17145;Dbxref=GenBank:WP_000911313.1;Name=WP_000911313.1;Ontology_term=GO:0000287,GO:0004540;gbkey=CDS;gene=vapC;go_function=magnesium ion binding|0000287||IEA,RNA nuclease activity|0004540||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858378.1;locus_tag=AD39_RS17145;product=type II toxin-antitoxin system tRNA(fMet)-specific endonuclease VapC;protein_id=WP_000911313.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 18545 20698 . - . ID=gene-AD39_RS17140;Name=traD;gbkey=Gene;gene=traD;gene_biotype=protein_coding;locus_tag=AD39_RS17140;old_locus_tag=AD39_1338 NZ_JJLH01000018.1 Protein Homology CDS 18545 20698 . - 0 ID=cds-WP_032283776.1;Parent=gene-AD39_RS17140;Dbxref=GenBank:WP_032283776.1;Name=WP_032283776.1;gbkey=CDS;gene=traD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001593043.1;locus_tag=AD39_RS17140;product=type IV conjugative transfer system coupling protein TraD;protein_id=WP_032283776.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 20793 23759 . - . ID=gene-AD39_RS17135;Name=AD39_RS17135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17135;old_locus_tag=AD39_1339 NZ_JJLH01000018.1 Protein Homology CDS 20793 23759 . - 0 ID=cds-WP_001138014.1;Parent=gene-AD39_RS17135;Dbxref=GenBank:WP_001138014.1;Name=WP_001138014.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001138014.1;locus_tag=AD39_RS17135;product=Tn3-like element TnAs1 family transposase;protein_id=WP_001138014.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 23763 24323 . - . ID=gene-AD39_RS17130;Name=AD39_RS17130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17130;old_locus_tag=AD39_1340 NZ_JJLH01000018.1 Protein Homology CDS 23763 24323 . - 0 ID=cds-WP_001161490.1;Parent=gene-AD39_RS17130;Dbxref=GenBank:WP_001161490.1;Name=WP_001161490.1;Ontology_term=GO:0006310,GO:0015074,GO:0000150,GO:0003677;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000147566.1;locus_tag=AD39_RS17130;product=recombinase family protein;protein_id=WP_001161490.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 24633 26210 . + . ID=gene-AD39_RS17125;Name=AD39_RS17125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17125;old_locus_tag=AD39_1342 NZ_JJLH01000018.1 Protein Homology CDS 24633 26210 . + 0 ID=cds-WP_001323889.1;Parent=gene-AD39_RS17125;Dbxref=GenBank:WP_001323889.1;Name=WP_001323889.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001513488.1;locus_tag=AD39_RS17125;product=methyl-accepting chemotaxis protein;protein_id=WP_001323889.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 26596 27327 . - . ID=gene-AD39_RS17120;Name=traT;gbkey=Gene;gene=traT;gene_biotype=protein_coding;locus_tag=AD39_RS17120;old_locus_tag=AD39_1343 NZ_JJLH01000018.1 Protein Homology CDS 26596 27327 . - 0 ID=cds-WP_023565183.1;Parent=gene-AD39_RS17120;Dbxref=GenBank:WP_023565183.1;Name=WP_023565183.1;gbkey=CDS;gene=traT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_490587.1;locus_tag=AD39_RS17120;product=conjugal transfer complement resistance protein TraT;protein_id=WP_023565183.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 27359 27856 . - . ID=gene-AD39_RS0123845;Name=AD39_RS0123845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123845 NZ_JJLH01000018.1 Protein Homology CDS 27359 27856 . - 0 ID=cds-WP_000605857.1;Parent=gene-AD39_RS0123845;Dbxref=GenBank:WP_000605857.1;Name=WP_000605857.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000605858.1;locus_tag=AD39_RS0123845;product=entry exclusion protein;protein_id=WP_000605857.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 27920 30685 . - . ID=gene-AD39_RS17115;Name=traG;gbkey=Gene;gene=traG;gene_biotype=protein_coding;locus_tag=AD39_RS17115;old_locus_tag=AD39_1344 NZ_JJLH01000018.1 Protein Homology CDS 27920 30685 . - 0 ID=cds-WP_050439099.1;Parent=gene-AD39_RS17115;Dbxref=GenBank:WP_050439099.1;Name=WP_050439099.1;gbkey=CDS;gene=traG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001774307.1;locus_tag=AD39_RS17115;product=conjugal transfer mating-pair stabilization protein TraG;protein_id=WP_050439099.1;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 30636 30839 . - . ID=gene-AD39_RS17110;Name=AD39_RS17110;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS17110;old_locus_tag=AD39_1345;partial=true;pseudo=true;start_range=.,30636 NZ_JJLH01000018.1 Protein Homology CDS 30636 30839 . - 0 ID=cds-AD39_RS17110;Parent=gene-AD39_RS17110;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_490565.1;locus_tag=AD39_RS17110;partial=true;product=conjugal transfer protein TraP;pseudo=true;start_range=.,30636;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 30861 31172 . - . ID=gene-AD39_RS17105;Name=traL;gbkey=Gene;gene=traL;gene_biotype=protein_coding;locus_tag=AD39_RS17105;old_locus_tag=AD39_1346 NZ_JJLH01000018.1 Protein Homology CDS 30861 31172 . - 0 ID=cds-WP_000012106.1;Parent=gene-AD39_RS17105;Dbxref=GenBank:WP_000012106.1;Name=WP_000012106.1;gbkey=CDS;gene=traL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_490564.1;locus_tag=AD39_RS17105;product=type IV conjugative transfer system protein TraL;protein_id=WP_000012106.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 31187 31552 . - . ID=gene-AD39_RS17100;Name=traA;gbkey=Gene;gene=traA;gene_biotype=protein_coding;locus_tag=AD39_RS17100;old_locus_tag=AD39_1347 NZ_JJLH01000018.1 Protein Homology CDS 31187 31552 . - 0 ID=cds-WP_000994779.1;Parent=gene-AD39_RS17100;Dbxref=GenBank:WP_000994779.1;Name=WP_000994779.1;gbkey=CDS;gene=traA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001098999.1;locus_tag=AD39_RS17100;product=type IV conjugative transfer system pilin TraA;protein_id=WP_000994779.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 31585 31980 . - . ID=gene-AD39_RS0123850;Name=traY;gbkey=Gene;gene=traY;gene_biotype=protein_coding;locus_tag=AD39_RS0123850 NZ_JJLH01000018.1 Protein Homology CDS 31585 31980 . - 0 ID=cds-WP_001309237.1;Parent=gene-AD39_RS0123850;Dbxref=GenBank:WP_001309237.1;Name=WP_001309237.1;Ontology_term=GO:0003677;gbkey=CDS;gene=traY;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001366159.1;locus_tag=AD39_RS0123850;product=conjugal transfer relaxosome DNA-bindin protein TraY;protein_id=WP_001309237.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 32079 32768 . - . ID=gene-AD39_RS17095;Name=traJ;gbkey=Gene;gene=traJ;gene_biotype=protein_coding;locus_tag=AD39_RS17095;old_locus_tag=AD39_1349 NZ_JJLH01000018.1 Protein Homology CDS 32079 32768 . - 0 ID=cds-WP_000283385.1;Parent=gene-AD39_RS17095;Dbxref=GenBank:WP_000283385.1;Name=WP_000283385.1;gbkey=CDS;gene=traJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003979562.1;locus_tag=AD39_RS17095;product=conjugal transfer transcriptional regulator TraJ;protein_id=WP_000283385.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 32955 33338 . - . ID=gene-AD39_RS17090;Name=traM;gbkey=Gene;gene=traM;gene_biotype=protein_coding;locus_tag=AD39_RS17090;old_locus_tag=AD39_1350 NZ_JJLH01000018.1 Protein Homology CDS 32955 33338 . - 0 ID=cds-WP_001151524.1;Parent=gene-AD39_RS17090;Dbxref=GenBank:WP_001151524.1;Name=WP_001151524.1;Ontology_term=GO:0003677;gbkey=CDS;gene=traM;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001151541.1;locus_tag=AD39_RS17090;product=conjugal transfer relaxosome DNA-binding protein TraM;protein_id=WP_001151524.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 33659 34261 . + . ID=gene-AD39_RS17085;Name=AD39_RS17085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17085;old_locus_tag=AD39_1351 NZ_JJLH01000018.1 Protein Homology CDS 33659 34261 . + 0 ID=cds-WP_000243701.1;Parent=gene-AD39_RS17085;Dbxref=GenBank:WP_000243701.1;Name=WP_000243701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000243715.1;locus_tag=AD39_RS17085;product=transglycosylase SLT domain-containing protein;protein_id=WP_000243701.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 34557 35378 . - . ID=gene-AD39_RS17080;Name=AD39_RS17080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17080;old_locus_tag=AD39_1353 NZ_JJLH01000018.1 Protein Homology CDS 34557 35378 . - 0 ID=cds-WP_001234475.1;Parent=gene-AD39_RS17080;Dbxref=GenBank:WP_001234475.1;Name=WP_001234475.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001234456.1;locus_tag=AD39_RS17080;product=DUF932 domain-containing protein;protein_id=WP_001234475.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 35497 35784 . - . ID=gene-AD39_RS17075;Name=AD39_RS17075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS17075;old_locus_tag=AD39_1354 NZ_JJLH01000018.1 Protein Homology CDS 35497 35784 . - 0 ID=cds-WP_000107542.1;Parent=gene-AD39_RS17075;Dbxref=GenBank:WP_000107542.1;Name=WP_000107542.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001825190.1;locus_tag=AD39_RS17075;product=hypothetical protein;protein_id=WP_000107542.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 35809 36015 . - . ID=gene-AD39_RS29385;Name=AD39_RS29385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29385 NZ_JJLH01000018.1 Protein Homology CDS 35809 36015 . - 0 ID=cds-WP_000547965.1;Parent=gene-AD39_RS29385;Dbxref=GenBank:WP_000547965.1;Name=WP_000547965.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000547968.1;locus_tag=AD39_RS29385;product=hypothetical protein;protein_id=WP_000547965.1;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 36085 36405 . + . ID=gene-AD39_RS29390;Name=AD39_RS29390;end_range=36405,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29390;partial=true;pseudo=true NZ_JJLH01000018.1 Protein Homology CDS 36085 36405 . + 0 ID=cds-AD39_RS29390;Parent=gene-AD39_RS29390;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=36405,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_052655.1;locus_tag=AD39_RS29390;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 36682 36807 . - . ID=gene-AD39_RS0123865;Name=AD39_RS0123865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123865 NZ_JJLH01000018.1 Protein Homology CDS 36682 36807 . - 0 ID=cds-WP_231822392.1;Parent=gene-AD39_RS0123865;Dbxref=GenBank:WP_231822392.1;Name=WP_231822392.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_052660.1;locus_tag=AD39_RS0123865;product=type I toxin-antitoxin system Hok family toxin;protein_id=WP_231822392.1;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 36749 36898 . - . ID=gene-AD39_RS29655;Name=AD39_RS29655;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29655;partial=true;pseudo=true;start_range=.,36749 NZ_JJLH01000018.1 Protein Homology CDS 36749 36898 . - 0 ID=cds-AD39_RS29655;Parent=gene-AD39_RS29655;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF010277.0;locus_tag=AD39_RS29655;partial=true;product=DUF5431 family protein;pseudo=true;start_range=.,36749;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 36940 38309 . - . ID=gene-AD39_RS28335;Name=AD39_RS28335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28335 NZ_JJLH01000018.1 Protein Homology CDS 37829 38309 . - 0 ID=cds-WP_085947770.1;Parent=gene-AD39_RS28335;Dbxref=GenBank:WP_085947770.1;Name=WP_085947770.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611947.1;locus_tag=AD39_RS28335;product=IS3-like element IS150 family transposase;protein_id=WP_085947770.1;transl_table=11 NZ_JJLH01000018.1 Protein Homology CDS 36940 37829 . - 2 ID=cds-WP_085947770.1;Parent=gene-AD39_RS28335;Dbxref=GenBank:WP_085947770.1;Name=WP_085947770.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611947.1;locus_tag=AD39_RS28335;product=IS3-like element IS150 family transposase;protein_id=WP_085947770.1;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 38595 39696 . - . ID=gene-AD39_RS17065;Name=chaA;gbkey=Gene;gene=chaA;gene_biotype=pseudogene;locus_tag=AD39_RS17065;old_locus_tag=AD39_1358;pseudo=true NZ_JJLH01000018.1 Protein Homology CDS 38595 39696 . - 0 ID=cds-AD39_RS17065;Parent=gene-AD39_RS17065;Note=frameshifted;gbkey=CDS;gene=chaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309748.1;locus_tag=AD39_RS17065;product=sodium-potassium/proton antiporter ChaA;pseudo=true;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 39966 40196 . + . ID=gene-AD39_RS17060;Name=chaB;gbkey=Gene;gene=chaB;gene_biotype=protein_coding;locus_tag=AD39_RS17060;old_locus_tag=AD39_1359 NZ_JJLH01000018.1 Protein Homology CDS 39966 40196 . + 0 ID=cds-WP_001146442.1;Parent=gene-AD39_RS17060;Dbxref=GenBank:WP_001146442.1;Name=WP_001146442.1;gbkey=CDS;gene=chaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309749.1;locus_tag=AD39_RS17060;product=putative cation transport regulator ChaB;protein_id=WP_001146442.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 40354 41049 . + . ID=gene-AD39_RS17055;Name=chaC;gbkey=Gene;gene=chaC;gene_biotype=protein_coding;locus_tag=AD39_RS17055;old_locus_tag=AD39_1360 NZ_JJLH01000018.1 Protein Homology CDS 40354 41049 . + 0 ID=cds-WP_001297117.1;Parent=gene-AD39_RS17055;Dbxref=GenBank:WP_001297117.1;Name=WP_001297117.1;gbkey=CDS;gene=chaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415736.2;locus_tag=AD39_RS17055;product=glutathione-specific gamma-glutamylcyclotransferase;protein_id=WP_001297117.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 41093 41446 . - . ID=gene-AD39_RS17050;Name=ychN;gbkey=Gene;gene=ychN;gene_biotype=protein_coding;locus_tag=AD39_RS17050;old_locus_tag=AD39_1361 NZ_JJLH01000018.1 Protein Homology CDS 41093 41446 . - 0 ID=cds-WP_001169669.1;Parent=gene-AD39_RS17050;Dbxref=GenBank:WP_001169669.1;Name=WP_001169669.1;gbkey=CDS;gene=ychN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309751.1;locus_tag=AD39_RS17050;product=DsrE/F sulfur relay family protein YchN;protein_id=WP_001169669.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 41631 43025 . + . ID=gene-AD39_RS17045;Name=ychO;gbkey=Gene;gene=ychO;gene_biotype=protein_coding;gene_synonym=iatA;locus_tag=AD39_RS17045;old_locus_tag=AD39_1362 NZ_JJLH01000018.1 Protein Homology CDS 41631 43025 . + 0 ID=cds-WP_000086212.1;Parent=gene-AD39_RS17045;Dbxref=GenBank:WP_000086212.1;Name=WP_000086212.1;gbkey=CDS;gene=ychO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415738.2;locus_tag=AD39_RS17045;product=inverse autotransporter invasin YchO;protein_id=WP_000086212.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 43026 43676 . - . ID=gene-AD39_RS17040;Name=narL;gbkey=Gene;gene=narL;gene_biotype=protein_coding;locus_tag=AD39_RS17040;old_locus_tag=AD39_1363 NZ_JJLH01000018.1 Protein Homology CDS 43026 43676 . - 0 ID=cds-WP_000070491.1;Parent=gene-AD39_RS17040;Dbxref=GenBank:WP_000070491.1;Name=WP_000070491.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=narL;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309753.1;locus_tag=AD39_RS17040;product=two-component system response regulator NarL;protein_id=WP_000070491.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 43669 45465 . - . ID=gene-AD39_RS17035;Name=narX;gbkey=Gene;gene=narX;gene_biotype=protein_coding;locus_tag=AD39_RS17035;old_locus_tag=AD39_1364 NZ_JJLH01000018.1 Protein Homology CDS 43669 45465 . - 0 ID=cds-WP_000918073.1;Parent=gene-AD39_RS17035;Dbxref=GenBank:WP_000918073.1;Name=WP_000918073.1;Ontology_term=GO:0000160,GO:0000155,GO:0046983,GO:0016020;gbkey=CDS;gene=narX;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein dimerization activity|0046983||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309754.1;locus_tag=AD39_RS17035;product=nitrate/nitrite two-component system sensor histidine kinase NarX;protein_id=WP_000918073.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 45804 47195 . + . ID=gene-AD39_RS17025;Name=narK;gbkey=Gene;gene=narK;gene_biotype=protein_coding;locus_tag=AD39_RS17025;old_locus_tag=AD39_1366 NZ_JJLH01000018.1 Protein Homology CDS 45804 47195 . + 0 ID=cds-WP_000019827.1;Parent=gene-AD39_RS17025;Dbxref=GenBank:WP_000019827.1;Name=WP_000019827.1;gbkey=CDS;gene=narK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415741.1;locus_tag=AD39_RS17025;product=nitrate transporter NarK;protein_id=WP_000019827.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 47588 51331 . + . ID=gene-AD39_RS17020;Name=narG;gbkey=Gene;gene=narG;gene_biotype=protein_coding;locus_tag=AD39_RS17020;old_locus_tag=AD39_1367 NZ_JJLH01000018.1 Protein Homology CDS 47588 51331 . + 0 ID=cds-WP_021824241.1;Parent=gene-AD39_RS17020;Dbxref=GenBank:WP_021824241.1;Name=WP_021824241.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;gene=narG;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309756.1;locus_tag=AD39_RS17020;product=nitrate reductase subunit alpha;protein_id=WP_021824241.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 51328 52866 . + . ID=gene-AD39_RS17015;Name=narH;gbkey=Gene;gene=narH;gene_biotype=protein_coding;locus_tag=AD39_RS17015;old_locus_tag=AD39_1368 NZ_JJLH01000018.1 Protein Homology CDS 51328 52866 . + 0 ID=cds-WP_000702660.1;Parent=gene-AD39_RS17015;Dbxref=GenBank:WP_000702660.1;Name=WP_000702660.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;gene=narH;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309757.1;locus_tag=AD39_RS17015;product=nitrate reductase subunit beta;protein_id=WP_000702660.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 52863 53573 . + . ID=gene-AD39_RS17010;Name=narJ;gbkey=Gene;gene=narJ;gene_biotype=protein_coding;locus_tag=AD39_RS17010;old_locus_tag=AD39_1369 NZ_JJLH01000018.1 Protein Homology CDS 52863 53573 . + 0 ID=cds-WP_000571699.1;Parent=gene-AD39_RS17010;Dbxref=GenBank:WP_000571699.1;Name=WP_000571699.1;Ontology_term=GO:0051131,GO:0051082;gbkey=CDS;gene=narJ;go_function=unfolded protein binding|0051082||IEA;go_process=chaperone-mediated protein complex assembly|0051131||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707135.1;locus_tag=AD39_RS17010;product=nitrate reductase molybdenum cofactor assembly chaperone;protein_id=WP_000571699.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 53573 54250 . + . ID=gene-AD39_RS17005;Name=narI;gbkey=Gene;gene=narI;gene_biotype=protein_coding;locus_tag=AD39_RS17005;old_locus_tag=AD39_1370 NZ_JJLH01000018.1 Protein Homology CDS 53573 54250 . + 0 ID=cds-WP_001160110.1;Parent=gene-AD39_RS17005;Dbxref=GenBank:WP_001160110.1;Name=WP_001160110.1;Ontology_term=GO:0019645,GO:0008940,GO:0009325;gbkey=CDS;gene=narI;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309759.1;locus_tag=AD39_RS17005;product=respiratory nitrate reductase subunit gamma;protein_id=WP_001160110.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 54434 54565 . - . ID=gene-AD39_RS26030;Name=AD39_RS26030;gbkey=Gene;gene_biotype=ncRNA;locus_tag=AD39_RS26030 NZ_JJLH01000018.1 cmsearch ncRNA 54434 54565 . - . ID=rna-AD39_RS26030;Parent=gene-AD39_RS26030;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26030;product=RtT sRNA NZ_JJLH01000018.1 cmsearch exon 54434 54565 . - . ID=exon-AD39_RS26030-1;Parent=rna-AD39_RS26030;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26030;product=RtT sRNA NZ_JJLH01000018.1 RefSeq gene 54613 54744 . - . ID=gene-AD39_RS26035;Name=AD39_RS26035;gbkey=Gene;gene_biotype=ncRNA;locus_tag=AD39_RS26035 NZ_JJLH01000018.1 cmsearch ncRNA 54613 54744 . - . ID=rna-AD39_RS26035;Parent=gene-AD39_RS26035;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26035;product=RtT sRNA NZ_JJLH01000018.1 cmsearch exon 54613 54744 . - . ID=exon-AD39_RS26035-1;Parent=rna-AD39_RS26035;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26035;product=RtT sRNA NZ_JJLH01000018.1 RefSeq gene 54792 54923 . - . ID=gene-AD39_RS26040;Name=AD39_RS26040;gbkey=Gene;gene_biotype=ncRNA;locus_tag=AD39_RS26040 NZ_JJLH01000018.1 cmsearch ncRNA 54792 54923 . - . ID=rna-AD39_RS26040;Parent=gene-AD39_RS26040;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26040;product=RtT sRNA NZ_JJLH01000018.1 cmsearch exon 54792 54923 . - . ID=exon-AD39_RS26040-1;Parent=rna-AD39_RS26040;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26040;product=RtT sRNA NZ_JJLH01000018.1 RefSeq gene 54970 55054 . - . ID=gene-AD39_RS17000;Name=AD39_RS17000;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS17000;old_locus_tag=AD39_1371 NZ_JJLH01000018.1 tRNAscan-SE tRNA 54970 55054 . - . ID=rna-AD39_RS17000;Parent=gene-AD39_RS17000;anticodon=(pos:complement(55018..55020));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS17000;product=tRNA-Tyr NZ_JJLH01000018.1 tRNAscan-SE exon 54970 55054 . - . ID=exon-AD39_RS17000-1;Parent=rna-AD39_RS17000;anticodon=(pos:complement(55018..55020));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS17000;product=tRNA-Tyr NZ_JJLH01000018.1 RefSeq gene 55089 55173 . - . ID=gene-AD39_RS16995;Name=AD39_RS16995;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS16995;old_locus_tag=AD39_1372 NZ_JJLH01000018.1 tRNAscan-SE tRNA 55089 55173 . - . ID=rna-AD39_RS16995;Parent=gene-AD39_RS16995;anticodon=(pos:complement(55137..55139));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS16995;product=tRNA-Tyr NZ_JJLH01000018.1 tRNAscan-SE exon 55089 55173 . - . ID=exon-AD39_RS16995-1;Parent=rna-AD39_RS16995;anticodon=(pos:complement(55137..55139));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS16995;product=tRNA-Tyr NZ_JJLH01000018.1 RefSeq gene 55208 55292 . - . ID=gene-AD39_RS16990;Name=AD39_RS16990;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS16990;old_locus_tag=AD39_1373 NZ_JJLH01000018.1 tRNAscan-SE tRNA 55208 55292 . - . ID=rna-AD39_RS16990;Parent=gene-AD39_RS16990;anticodon=(pos:complement(55256..55258));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS16990;product=tRNA-Tyr NZ_JJLH01000018.1 tRNAscan-SE exon 55208 55292 . - . ID=exon-AD39_RS16990-1;Parent=rna-AD39_RS16990;anticodon=(pos:complement(55256..55258));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS16990;product=tRNA-Tyr NZ_JJLH01000018.1 RefSeq gene 55327 55411 . - . ID=gene-AD39_RS16985;Name=AD39_RS16985;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS16985;old_locus_tag=AD39_1374 NZ_JJLH01000018.1 tRNAscan-SE tRNA 55327 55411 . - . ID=rna-AD39_RS16985;Parent=gene-AD39_RS16985;anticodon=(pos:complement(55375..55377));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS16985;product=tRNA-Tyr NZ_JJLH01000018.1 tRNAscan-SE exon 55327 55411 . - . ID=exon-AD39_RS16985-1;Parent=rna-AD39_RS16985;anticodon=(pos:complement(55375..55377));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS16985;product=tRNA-Tyr NZ_JJLH01000018.1 RefSeq gene 55571 56413 . - . ID=gene-AD39_RS16980;Name=purU;gbkey=Gene;gene=purU;gene_biotype=protein_coding;locus_tag=AD39_RS16980;old_locus_tag=AD39_1375 NZ_JJLH01000018.1 Protein Homology CDS 55571 56413 . - 0 ID=cds-WP_000555853.1;Parent=gene-AD39_RS16980;Dbxref=GenBank:WP_000555853.1;Name=WP_000555853.1;Ontology_term=GO:0006189,GO:0008864;gbkey=CDS;gene=purU;go_function=formyltetrahydrofolate deformylase activity|0008864||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309761.1;locus_tag=AD39_RS16980;product=formyltetrahydrofolate deformylase;protein_id=WP_000555853.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 56463 56921 . - . ID=gene-AD39_RS0123880;Name=ychJ;gbkey=Gene;gene=ychJ;gene_biotype=protein_coding;locus_tag=AD39_RS0123880;old_locus_tag=AD39_1376 NZ_JJLH01000018.1 Protein Homology CDS 56463 56921 . - 0 ID=cds-WP_001362540.1;Parent=gene-AD39_RS0123880;Dbxref=GenBank:WP_001362540.1;Name=WP_001362540.1;gbkey=CDS;gene=ychJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309762.1;locus_tag=AD39_RS0123880;product=YchJ family protein;protein_id=WP_001362540.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 57034 57939 . + . ID=gene-AD39_RS16975;Name=rssA;gbkey=Gene;gene=rssA;gene_biotype=protein_coding;locus_tag=AD39_RS16975;old_locus_tag=AD39_1377 NZ_JJLH01000018.1 Protein Homology CDS 57034 57939 . + 0 ID=cds-WP_001226476.1;Parent=gene-AD39_RS16975;Dbxref=GenBank:WP_001226476.1;Name=WP_001226476.1;Ontology_term=GO:0006629,GO:0004622;gbkey=CDS;gene=rssA;go_function=lysophospholipase activity|0004622||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707140.2;locus_tag=AD39_RS16975;product=patatin-like phospholipase RssA;protein_id=WP_001226476.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 58031 59044 . + . ID=gene-AD39_RS16970;Name=rssB;gbkey=Gene;gene=rssB;gene_biotype=protein_coding;locus_tag=AD39_RS16970;old_locus_tag=AD39_1378 NZ_JJLH01000018.1 Protein Homology CDS 58031 59044 . + 0 ID=cds-WP_001390147.1;Parent=gene-AD39_RS16970;Dbxref=GenBank:WP_001390147.1;Name=WP_001390147.1;Ontology_term=GO:0000160;gbkey=CDS;gene=rssB;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309764.1;locus_tag=AD39_RS16970;product=two-component system response regulator RssB;protein_id=WP_001390147.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 59246 60154 . + . ID=gene-AD39_RS16965;Name=galU;gbkey=Gene;gene=galU;gene_biotype=protein_coding;locus_tag=AD39_RS16965;old_locus_tag=AD39_1379 NZ_JJLH01000018.1 Protein Homology CDS 59246 60154 . + 0 ID=cds-WP_000718995.1;Parent=gene-AD39_RS16965;Dbxref=GenBank:WP_000718995.1;Name=WP_000718995.1;gbkey=CDS;gene=galU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309765.1;locus_tag=AD39_RS16965;product=UTP--glucose-1-phosphate uridylyltransferase GalU;protein_id=WP_000718995.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 60298 60711 . - . ID=gene-AD39_RS16960;Name=hns;gbkey=Gene;gene=hns;gene_biotype=protein_coding;locus_tag=AD39_RS16960;old_locus_tag=AD39_1380 NZ_JJLH01000018.1 Protein Homology CDS 60298 60711 . - 0 ID=cds-WP_001287378.1;Parent=gene-AD39_RS16960;Dbxref=GenBank:WP_001287378.1;Name=WP_001287378.1;Ontology_term=GO:0071824,GO:0003677;gbkey=CDS;gene=hns;go_function=DNA binding|0003677||IEA;go_process=protein-DNA complex organization|0071824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309766.1;locus_tag=AD39_RS16960;product=histone-like nucleoid-structuring protein H-NS;protein_id=WP_001287378.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 61316 61933 . + . ID=gene-AD39_RS16955;Name=tdk;gbkey=Gene;gene=tdk;gene_biotype=protein_coding;locus_tag=AD39_RS16955;old_locus_tag=AD39_1381 NZ_JJLH01000018.1 Protein Homology CDS 61316 61933 . + 0 ID=cds-WP_032283168.1;Parent=gene-AD39_RS16955;Dbxref=GenBank:WP_032283168.1;Name=WP_032283168.1;gbkey=CDS;gene=tdk;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309767.1;locus_tag=AD39_RS16955;product=thymidine kinase;protein_id=WP_032283168.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 62235 64910 . - . ID=gene-AD39_RS16950;Name=adhE;gbkey=Gene;gene=adhE;gene_biotype=protein_coding;gene_synonym=adhC;locus_tag=AD39_RS16950;old_locus_tag=AD39_1382 NZ_JJLH01000018.1 Protein Homology CDS 62235 64910 . - 0 ID=cds-WP_000301651.1;Parent=gene-AD39_RS16950;Dbxref=GenBank:WP_000301651.1;Name=WP_000301651.1;Ontology_term=GO:0006066,GO:0015976,GO:0004022,GO:0016620,GO:0046872;gbkey=CDS;gene=adhE;go_function=alcohol dehydrogenase (NAD+) activity|0004022||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,metal ion binding|0046872||IEA;go_process=alcohol metabolic process|0006066||IEA,carbon utilization|0015976||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309768.1;locus_tag=AD39_RS16950;product=bifunctional acetaldehyde-CoA/alcohol dehydrogenase;protein_id=WP_000301651.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 65303 65356 . + . ID=gene-AD39_RS29660;Name=ychE;gbkey=Gene;gene=ychE;gene_biotype=protein_coding;locus_tag=AD39_RS29660 NZ_JJLH01000018.1 Protein Homology CDS 65303 65356 . + 0 ID=cds-WP_211180492.1;Parent=gene-AD39_RS29660;Dbxref=GenBank:WP_211180492.1;Name=WP_211180492.1;gbkey=CDS;gene=ychE;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051181.1;locus_tag=AD39_RS29660;product=protein YchT;protein_id=WP_211180492.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 65387 66034 . + . ID=gene-AD39_RS16945;Name=ychE;gbkey=Gene;gene=ychE;gene_biotype=protein_coding;locus_tag=AD39_RS16945;old_locus_tag=AD39_1383 NZ_JJLH01000018.1 Protein Homology CDS 65387 66034 . + 0 ID=cds-WP_000616554.1;Parent=gene-AD39_RS16945;Dbxref=GenBank:WP_000616554.1;Name=WP_000616554.1;gbkey=CDS;gene=ychE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415758.1;locus_tag=AD39_RS16945;product=NAAT family transporter YchE;protein_id=WP_000616554.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 66192 66488 . - . ID=gene-AD39_RS29395;Name=AD39_RS29395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29395 NZ_JJLH01000018.1 GeneMarkS-2+ CDS 66192 66488 . - 0 ID=cds-WP_001211521.1;Parent=gene-AD39_RS29395;Dbxref=GenBank:WP_001211521.1;Name=WP_001211521.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS29395;product=hypothetical protein;protein_id=WP_001211521.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 66772 68403 . + . ID=gene-AD39_RS16940;Name=oppA;gbkey=Gene;gene=oppA;gene_biotype=protein_coding;locus_tag=AD39_RS16940;old_locus_tag=AD39_1385 NZ_JJLH01000018.1 Protein Homology CDS 66772 68403 . + 0 ID=cds-WP_001297114.1;Parent=gene-AD39_RS16940;Dbxref=GenBank:WP_001297114.1;Name=WP_001297114.1;Ontology_term=GO:0055085,GO:0043190;gbkey=CDS;gene=oppA;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707150.2;locus_tag=AD39_RS16940;product=oligopeptide ABC transporter substrate-binding protein OppA;protein_id=WP_001297114.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 68489 69409 . + . ID=gene-AD39_RS16935;Name=oppB;gbkey=Gene;gene=oppB;gene_biotype=protein_coding;locus_tag=AD39_RS16935;old_locus_tag=AD39_1386 NZ_JJLH01000018.1 Protein Homology CDS 68489 69409 . + 0 ID=cds-WP_000911112.1;Parent=gene-AD39_RS16935;Dbxref=GenBank:WP_000911112.1;Name=WP_000911112.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=oppB;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126405.1;locus_tag=AD39_RS16935;product=oligopeptide ABC transporter permease OppB;protein_id=WP_000911112.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 69424 70332 . + . ID=gene-AD39_RS16930;Name=oppC;gbkey=Gene;gene=oppC;gene_biotype=protein_coding;locus_tag=AD39_RS16930;old_locus_tag=AD39_1387 NZ_JJLH01000018.1 Protein Homology CDS 69424 70332 . + 0 ID=cds-WP_024172171.1;Parent=gene-AD39_RS16930;Dbxref=GenBank:WP_024172171.1;Name=WP_024172171.1;Ontology_term=GO:0055085;gbkey=CDS;gene=oppC;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000979653.1;locus_tag=AD39_RS16930;product=oligopeptide ABC transporter permease OppC;protein_id=WP_024172171.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 70344 71357 . + . ID=gene-AD39_RS16925;Name=oppD;gbkey=Gene;gene=oppD;gene_biotype=protein_coding;locus_tag=AD39_RS16925;old_locus_tag=AD39_1388 NZ_JJLH01000018.1 Protein Homology CDS 70344 71357 . + 0 ID=cds-WP_000110945.1;Parent=gene-AD39_RS16925;Dbxref=GenBank:WP_000110945.1;Name=WP_000110945.1;gbkey=CDS;gene=oppD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309773.1;locus_tag=AD39_RS16925;product=murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD;protein_id=WP_000110945.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 71354 72358 . + . ID=gene-AD39_RS16920;Name=oppF;gbkey=Gene;gene=oppF;gene_biotype=protein_coding;locus_tag=AD39_RS16920;old_locus_tag=AD39_1389 NZ_JJLH01000018.1 Protein Homology CDS 71354 72358 . + 0 ID=cds-WP_000994905.1;Parent=gene-AD39_RS16920;Dbxref=GenBank:WP_000994905.1;Name=WP_000994905.1;gbkey=CDS;gene=oppF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309774.1;locus_tag=AD39_RS16920;product=murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF;protein_id=WP_000994905.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 72411 72740 . - . ID=gene-AD39_RS16915;Name=yciU;gbkey=Gene;gene=yciU;gene_biotype=protein_coding;locus_tag=AD39_RS16915;old_locus_tag=AD39_1390 NZ_JJLH01000018.1 Protein Homology CDS 72411 72740 . - 0 ID=cds-WP_000366959.1;Parent=gene-AD39_RS16915;Dbxref=GenBank:WP_000366959.1;Name=WP_000366959.1;gbkey=CDS;gene=yciU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309775.2;locus_tag=AD39_RS16915;product=HI1450 family dsDNA-mimic protein;protein_id=WP_000366959.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 72775 74235 . - . ID=gene-AD39_RS16910;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=AD39_RS16910;old_locus_tag=AD39_1391 NZ_JJLH01000018.1 Protein Homology CDS 72775 74235 . - 0 ID=cds-WP_000214516.1;Parent=gene-AD39_RS16910;Dbxref=GenBank:WP_000214516.1;Name=WP_000214516.1;Ontology_term=GO:0032049,GO:0008808,GO:0016780;gbkey=CDS;gene=cls;go_function=cardiolipin synthase activity|0008808||IEA,phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126413.1;locus_tag=AD39_RS16910;product=cardiolipin synthase;protein_id=WP_000214516.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 74378 74551 . + . ID=gene-AD39_RS28970;Name=yciY;gbkey=Gene;gene=yciY;gene_biotype=protein_coding;locus_tag=AD39_RS28970 NZ_JJLH01000018.1 Protein Homology CDS 74378 74551 . + 0 ID=cds-WP_001309467.1;Parent=gene-AD39_RS28970;Dbxref=GenBank:WP_001309467.1;Name=WP_001309467.1;gbkey=CDS;gene=yciY;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165316.1;locus_tag=AD39_RS28970;product=YciY family protein;protein_id=WP_001309467.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 74606 75859 . - . ID=gene-AD39_RS16905;Name=kch;gbkey=Gene;gene=kch;gene_biotype=protein_coding;locus_tag=AD39_RS16905;old_locus_tag=AD39_1392 NZ_JJLH01000018.1 Protein Homology CDS 74606 75859 . - 0 ID=cds-WP_000020078.1;Parent=gene-AD39_RS16905;Dbxref=GenBank:WP_000020078.1;Name=WP_000020078.1;gbkey=CDS;gene=kch;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309777.1;locus_tag=AD39_RS16905;product=voltage-gated potassium channel protein;protein_id=WP_000020078.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 76158 76454 . - . ID=gene-AD39_RS16900;Name=yciI;gbkey=Gene;gene=yciI;gene_biotype=protein_coding;locus_tag=AD39_RS16900;old_locus_tag=AD39_1393 NZ_JJLH01000018.1 Protein Homology CDS 76158 76454 . - 0 ID=cds-WP_000967595.1;Parent=gene-AD39_RS16900;Dbxref=GenBank:WP_000967595.1;Name=WP_000967595.1;gbkey=CDS;gene=yciI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415767.2;locus_tag=AD39_RS16900;product=YciI family protein;protein_id=WP_000967595.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 76678 77397 . + . ID=gene-AD39_RS16895;Name=tonB;gbkey=Gene;gene=tonB;gene_biotype=protein_coding;locus_tag=AD39_RS16895;old_locus_tag=AD39_1394 NZ_JJLH01000018.1 Protein Homology CDS 76678 77397 . + 0 ID=cds-WP_001376357.1;Parent=gene-AD39_RS16895;Dbxref=GenBank:WP_001376357.1;Name=WP_001376357.1;gbkey=CDS;gene=tonB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415768.1;locus_tag=AD39_RS16895;product=TonB system transport protein TonB;protein_id=WP_001376357.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 77437 77835 . - . ID=gene-AD39_RS16890;Name=yciA;gbkey=Gene;gene=yciA;gene_biotype=protein_coding;locus_tag=AD39_RS16890;old_locus_tag=AD39_1395 NZ_JJLH01000018.1 Protein Homology CDS 77437 77835 . - 0 ID=cds-WP_032265499.1;Parent=gene-AD39_RS16890;Dbxref=GenBank:WP_032265499.1;Name=WP_032265499.1;Ontology_term=GO:0016790;gbkey=CDS;gene=yciA;go_function=thiolester hydrolase activity|0016790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415769.1;locus_tag=AD39_RS16890;product=acyl-CoA thioester hydrolase YciA;protein_id=WP_032265499.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 77940 78479 . - . ID=gene-AD39_RS16885;Name=yciB;gbkey=Gene;gene=yciB;gene_biotype=protein_coding;locus_tag=AD39_RS16885;old_locus_tag=AD39_1396 NZ_JJLH01000018.1 Protein Homology CDS 77940 78479 . - 0 ID=cds-WP_000808667.1;Parent=gene-AD39_RS16885;Dbxref=GenBank:WP_000808667.1;Name=WP_000808667.1;gbkey=CDS;gene=yciB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309781.1;locus_tag=AD39_RS16885;product=septation protein A;protein_id=WP_000808667.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 78509 79252 . - . ID=gene-AD39_RS16880;Name=yciC;gbkey=Gene;gene=yciC;gene_biotype=protein_coding;locus_tag=AD39_RS16880;old_locus_tag=AD39_1397 NZ_JJLH01000018.1 Protein Homology CDS 78509 79252 . - 0 ID=cds-WP_000028540.1;Parent=gene-AD39_RS16880;Dbxref=GenBank:WP_000028540.1;Name=WP_000028540.1;gbkey=CDS;gene=yciC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415771.1;locus_tag=AD39_RS16880;product=YciC family protein;protein_id=WP_000028540.1;transl_table=11 NZ_JJLH01000018.1 RefSeq pseudogene 79280 79369 . - . ID=gene-AD39_RS26730;Name=AD39_RS26730;end_range=79369,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS26730;partial=true;pseudo=true NZ_JJLH01000018.1 Protein Homology CDS 79280 79369 . - 0 ID=cds-AD39_RS26730;Parent=gene-AD39_RS26730;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=79369,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460692.1;locus_tag=AD39_RS26730;partial=true;product=YkgJ family cysteine cluster protein;pseudo=true;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 79609 80247 . + . ID=gene-AD39_RS16875;Name=ompW;gbkey=Gene;gene=ompW;gene_biotype=protein_coding;locus_tag=AD39_RS16875;old_locus_tag=AD39_1398 NZ_JJLH01000018.1 Protein Homology CDS 79609 80247 . + 0 ID=cds-WP_000737224.1;Parent=gene-AD39_RS16875;Dbxref=GenBank:WP_000737224.1;Name=WP_000737224.1;Ontology_term=GO:0019867;gbkey=CDS;gene=ompW;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309783.1;locus_tag=AD39_RS16875;product=outer membrane protein OmpW;protein_id=WP_000737224.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 80293 81423 . - . ID=gene-AD39_RS16870;Name=AD39_RS16870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16870;old_locus_tag=AD39_1399 NZ_JJLH01000018.1 Protein Homology CDS 80293 81423 . - 0 ID=cds-WP_000113700.1;Parent=gene-AD39_RS16870;Dbxref=GenBank:WP_000113700.1;Name=WP_000113700.1;Ontology_term=GO:0015074,GO:0003677,GO:0008907;gbkey=CDS;go_function=DNA binding|0003677||IEA,integrase activity|0008907||IEA;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309784.1;locus_tag=AD39_RS16870;product=phage integrase Arm DNA-binding domain-containing protein;protein_id=WP_000113700.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 81401 81649 . - . ID=gene-AD39_RS0123890;Name=AD39_RS0123890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123890 NZ_JJLH01000018.1 Protein Homology CDS 81401 81649 . - 0 ID=cds-WP_000113189.1;Parent=gene-AD39_RS0123890;Dbxref=GenBank:WP_000113189.1;Name=WP_000113189.1;Ontology_term=GO:0006310,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309785.1;locus_tag=AD39_RS0123890;product=excisionase;protein_id=WP_000113189.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 81714 84185 . - . ID=gene-AD39_RS16865;Name=AD39_RS16865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16865;old_locus_tag=AD39_1400 NZ_JJLH01000018.1 Protein Homology CDS 81714 84185 . - 0 ID=cds-WP_000048504.1;Parent=gene-AD39_RS16865;Dbxref=GenBank:WP_000048504.1;Name=WP_000048504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309786.1;locus_tag=AD39_RS16865;product=exonuclease;protein_id=WP_000048504.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 84278 84469 . - . ID=gene-AD39_RS16860;Name=ydfD;gbkey=Gene;gene=ydfD;gene_biotype=protein_coding;locus_tag=AD39_RS16860;old_locus_tag=AD39_1401 NZ_JJLH01000018.1 Protein Homology CDS 84278 84469 . - 0 ID=cds-WP_001090200.1;Parent=gene-AD39_RS16860;Dbxref=GenBank:WP_001090200.1;Name=WP_001090200.1;gbkey=CDS;gene=ydfD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309787.1;locus_tag=AD39_RS16860;product=DUF1482 family protein;protein_id=WP_001090200.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 84466 84654 . - . ID=gene-AD39_RS16855;Name=dicB;gbkey=Gene;gene=dicB;gene_biotype=protein_coding;locus_tag=AD39_RS16855;old_locus_tag=AD39_1402 NZ_JJLH01000018.1 Protein Homology CDS 84466 84654 . - 0 ID=cds-WP_000449192.1;Parent=gene-AD39_RS16855;Dbxref=GenBank:WP_000449192.1;Name=WP_000449192.1;gbkey=CDS;gene=dicB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309788.1;locus_tag=AD39_RS16855;product=cell division inhibition protein DicB;protein_id=WP_000449192.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 85217 85492 . + . ID=gene-AD39_RS29400;Name=AD39_RS29400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29400 NZ_JJLH01000018.1 Protein Homology CDS 85217 85492 . + 0 ID=cds-WP_000102678.1;Parent=gene-AD39_RS29400;Dbxref=GenBank:WP_000102678.1;Name=WP_000102678.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000102679.1;locus_tag=AD39_RS29400;product=hypothetical protein;protein_id=WP_000102678.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 85470 85790 . - . ID=gene-AD39_RS16845;Name=AD39_RS16845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16845;old_locus_tag=AD39_1405 NZ_JJLH01000018.1 Protein Homology CDS 85470 85790 . - 0 ID=cds-WP_001435739.1;Parent=gene-AD39_RS16845;Dbxref=GenBank:WP_001435739.1;Name=WP_001435739.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016238838.1;locus_tag=AD39_RS16845;product=hypothetical protein;protein_id=WP_001435739.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 85802 85954 . - . ID=gene-AD39_RS16840;Name=AD39_RS16840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16840;old_locus_tag=AD39_1406 NZ_JJLH01000018.1 Protein Homology CDS 85802 85954 . - 0 ID=cds-WP_001725971.1;Parent=gene-AD39_RS16840;Dbxref=GenBank:WP_001725971.1;Name=WP_001725971.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000379546.1;locus_tag=AD39_RS16840;product=DUF1391 family protein;protein_id=WP_001725971.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 86220 86639 . - . ID=gene-AD39_RS0123895;Name=AD39_RS0123895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123895 NZ_JJLH01000018.1 Protein Homology CDS 86220 86639 . - 0 ID=cds-WP_000362153.1;Parent=gene-AD39_RS0123895;Dbxref=GenBank:WP_000362153.1;Name=WP_000362153.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000362153.1;locus_tag=AD39_RS0123895;product=hypothetical protein;protein_id=WP_000362153.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 86740 87021 . + . ID=gene-AD39_RS0123900;Name=AD39_RS0123900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123900 NZ_JJLH01000018.1 Protein Homology CDS 86740 87021 . + 0 ID=cds-WP_000391950.1;Parent=gene-AD39_RS0123900;Dbxref=GenBank:WP_000391950.1;Name=WP_000391950.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000391949.1;locus_tag=AD39_RS0123900;product=transcriptional regulator;protein_id=WP_000391950.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 87005 87430 . + . ID=gene-AD39_RS16835;Name=AD39_RS16835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16835;old_locus_tag=AD39_1408 NZ_JJLH01000018.1 Protein Homology CDS 87005 87430 . + 0 ID=cds-WP_032188698.1;Parent=gene-AD39_RS16835;Dbxref=GenBank:WP_032188698.1;Name=WP_032188698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310304.1;locus_tag=AD39_RS16835;product=toxin YdaT family protein;protein_id=WP_032188698.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 87453 88415 . + . ID=gene-AD39_RS16830;Name=AD39_RS16830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16830;old_locus_tag=AD39_1409 NZ_JJLH01000018.1 Protein Homology CDS 87453 88415 . + 0 ID=cds-WP_032283173.1;Parent=gene-AD39_RS16830;Dbxref=GenBank:WP_032283173.1;Name=WP_032283173.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310303.2;locus_tag=AD39_RS16830;product=helix-turn-helix domain-containing protein;protein_id=WP_032283173.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 88422 89168 . + . ID=gene-AD39_RS16825;Name=AD39_RS16825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16825;old_locus_tag=AD39_1410 NZ_JJLH01000018.1 Protein Homology CDS 88422 89168 . + 0 ID=cds-WP_000788950.1;Parent=gene-AD39_RS16825;Dbxref=GenBank:WP_000788950.1;Name=WP_000788950.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309101.1;locus_tag=AD39_RS16825;product=ATP-binding protein;protein_id=WP_000788950.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 89190 89960 . + . ID=gene-AD39_RS16820;Name=AD39_RS16820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16820;old_locus_tag=AD39_1411 NZ_JJLH01000018.1 Protein Homology CDS 89190 89960 . + 0 ID=cds-WP_000450999.1;Parent=gene-AD39_RS16820;Dbxref=GenBank:WP_000450999.1;Name=WP_000450999.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309102.1;locus_tag=AD39_RS16820;product=DUF1627 domain-containing protein;protein_id=WP_000450999.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 89976 90401 . + . ID=gene-AD39_RS16815;Name=AD39_RS16815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16815;old_locus_tag=AD39_1412 NZ_JJLH01000018.1 Protein Homology CDS 89976 90401 . + 0 ID=cds-WP_001151165.1;Parent=gene-AD39_RS16815;Dbxref=GenBank:WP_001151165.1;Name=WP_001151165.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016232644.1;locus_tag=AD39_RS16815;product=DUF977 family protein;protein_id=WP_001151165.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 90576 91241 . + . ID=gene-AD39_RS16810;Name=AD39_RS16810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16810;old_locus_tag=AD39_1413 NZ_JJLH01000018.1 Protein Homology CDS 90576 91241 . + 0 ID=cds-WP_000150294.1;Parent=gene-AD39_RS16810;Dbxref=GenBank:WP_000150294.1;Name=WP_000150294.1;Ontology_term=GO:0008033,GO:0008616,GO:0046872,GO:0051539,GO:0052693;gbkey=CDS;go_function=metal ion binding|0046872||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,epoxyqueuosine reductase activity|0052693||IEA;go_process=tRNA processing|0008033||IEA,queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016235606.1;locus_tag=AD39_RS16810;product=epoxyqueuosine reductase QueH;protein_id=WP_000150294.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 91479 91634 . + . ID=gene-AD39_RS0123905;Name=hokD;gbkey=Gene;gene=hokD;gene_biotype=protein_coding;locus_tag=AD39_RS0123905 NZ_JJLH01000018.1 Protein Homology CDS 91479 91634 . + 0 ID=cds-WP_000813262.1;Parent=gene-AD39_RS0123905;Dbxref=GenBank:WP_000813262.1;Name=WP_000813262.1;gbkey=CDS;gene=hokD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416080.1;locus_tag=AD39_RS0123905;product=type I toxin-antitoxin system toxin HokD;protein_id=WP_000813262.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 91676 91855 . - . ID=gene-AD39_RS30040;Name=AD39_RS30040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30040;old_locus_tag=AD39_1414 NZ_JJLH01000018.1 Protein Homology CDS 91676 91855 . - 0 ID=cds-WP_001112736.1;Parent=gene-AD39_RS30040;Dbxref=GenBank:WP_001112736.1;Name=WP_001112736.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001112740.1;locus_tag=AD39_RS30040;product=hypothetical protein;protein_id=WP_001112736.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 91802 92074 . + . ID=gene-AD39_RS0123910;Name=AD39_RS0123910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123910 NZ_JJLH01000018.1 Protein Homology CDS 91802 92074 . + 0 ID=cds-WP_001329966.1;Parent=gene-AD39_RS0123910;Dbxref=GenBank:WP_001329966.1;Name=WP_001329966.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000940925.1;locus_tag=AD39_RS0123910;product=hypothetical protein;protein_id=WP_001329966.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 92076 93122 . + . ID=gene-AD39_RS16800;Name=AD39_RS16800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16800;old_locus_tag=AD39_1415 NZ_JJLH01000018.1 Protein Homology CDS 92076 93122 . + 0 ID=cds-WP_032188719.1;Parent=gene-AD39_RS16800;Dbxref=GenBank:WP_032188719.1;Name=WP_032188719.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707428.1;locus_tag=AD39_RS16800;product=DUF968 domain-containing protein;protein_id=WP_032188719.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 93135 93509 . + . ID=gene-AD39_RS16795;Name=AD39_RS16795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16795;old_locus_tag=AD39_1416 NZ_JJLH01000018.1 Protein Homology CDS 93135 93509 . + 0 ID=cds-WP_001217453.1;Parent=gene-AD39_RS16795;Dbxref=GenBank:WP_001217453.1;Name=WP_001217453.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309550.1;locus_tag=AD39_RS16795;product=RusA family crossover junction endodeoxyribonuclease;protein_id=WP_001217453.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 93506 94327 . + . ID=gene-AD39_RS16790;Name=AD39_RS16790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16790;old_locus_tag=AD39_1417 NZ_JJLH01000018.1 Protein Homology CDS 93506 94327 . + 0 ID=cds-WP_000762914.1;Parent=gene-AD39_RS16790;Dbxref=GenBank:WP_000762914.1;Name=WP_000762914.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309551.1;locus_tag=AD39_RS16790;product=antitermination protein;protein_id=WP_000762914.1;transl_table=11 NZ_JJLH01000018.1 RefSeq gene 94554 94705 . + . ID=gene-AD39_RS28345;Name=AD39_RS28345;end_range=94705,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28345;old_locus_tag=AD39_1418;partial=true NZ_JJLH01000018.1 Protein Homology CDS 94554 94705 . + 0 ID=cds-WP_001478069.1;Parent=gene-AD39_RS28345;Dbxref=GenBank:WP_001478069.1;Name=WP_001478069.1;end_range=94705,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310219.1;locus_tag=AD39_RS28345;partial=true;product=hypothetical protein;protein_id=WP_001478069.1;transl_table=11 ##sequence-region NZ_JJLH01000019.1 1 83177 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000019.1 RefSeq region 1 83177 . + . ID=NZ_JJLH01000019.1:1..83177;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000019.1 RefSeq gene 1 801 . + . ID=gene-AD39_RS16780;Name=AD39_RS16780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16780;old_locus_tag=AD39_1419;partial=true;start_range=.,1 NZ_JJLH01000019.1 Protein Homology CDS 1 801 . + 0 ID=cds-WP_148725092.1;Parent=gene-AD39_RS16780;Dbxref=GenBank:WP_148725092.1;Name=WP_148725092.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415890.2;locus_tag=AD39_RS16780;partial=true;product=phage tail protein;protein_id=WP_148725092.1;start_range=.,1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 801 1385 . + . ID=gene-AD39_RS16775;Name=AD39_RS16775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16775;old_locus_tag=AD39_1420 NZ_JJLH01000019.1 Protein Homology CDS 801 1385 . + 0 ID=cds-WP_000885567.1;Parent=gene-AD39_RS16775;Dbxref=GenBank:WP_000885567.1;Name=WP_000885567.1;Ontology_term=GO:0098004;gbkey=CDS;go_process=virus tail fiber assembly|0098004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000885581.1;locus_tag=AD39_RS16775;product=tail fiber assembly protein;protein_id=WP_000885567.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 1358 1495 . + . ID=gene-AD39_RS30045;Name=AD39_RS30045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30045 NZ_JJLH01000019.1 Protein Homology CDS 1358 1495 . + 0 ID=cds-WP_001309429.1;Parent=gene-AD39_RS30045;Dbxref=GenBank:WP_001309429.1;Name=WP_001309429.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001309429.1;locus_tag=AD39_RS30045;product=hypothetical protein;protein_id=WP_001309429.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 1440 2108 . - . ID=gene-AD39_RS0123930;Name=AD39_RS0123930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0123930 NZ_JJLH01000019.1 Protein Homology CDS 1440 2108 . - 0 ID=cds-WP_000240999.1;Parent=gene-AD39_RS0123930;Dbxref=GenBank:WP_000240999.1;Name=WP_000240999.1;Ontology_term=GO:0032259,GO:0008168,GO:0008757,GO:1904047;gbkey=CDS;go_function=methyltransferase activity|0008168||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=methylation|0032259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707858.1;locus_tag=AD39_RS0123930;product=class I SAM-dependent methyltransferase;protein_id=WP_000240999.1;transl_table=11 NZ_JJLH01000019.1 RefSeq pseudogene 2258 2434 . + . ID=gene-AD39_RS29665;Name=AD39_RS29665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29665;old_locus_tag=AD39_1421;partial=true;pseudo=true;start_range=.,2258 NZ_JJLH01000019.1 Protein Homology CDS 2258 2434 . + 0 ID=cds-AD39_RS29665;Parent=gene-AD39_RS29665;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415891.1;locus_tag=AD39_RS29665;partial=true;product=tail fiber assembly protein;pseudo=true;start_range=.,2258;transl_table=11 NZ_JJLH01000019.1 RefSeq pseudogene 2531 2800 . + . ID=gene-AD39_RS30140;Name=AD39_RS30140;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30140;partial=true;pseudo=true;start_range=.,2531 NZ_JJLH01000019.1 Protein Homology CDS 2531 2800 . + 0 ID=cds-AD39_RS30140;Parent=gene-AD39_RS30140;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000701868.1;locus_tag=AD39_RS30140;partial=true;product=DUF4376 domain-containing protein;pseudo=true;start_range=.,2531;transl_table=11 NZ_JJLH01000019.1 RefSeq pseudogene 3023 3148 . + . ID=gene-AD39_RS26750;Name=AD39_RS26750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS26750;old_locus_tag=AD39_1423;partial=true;pseudo=true;start_range=.,3023 NZ_JJLH01000019.1 Protein Homology CDS 3023 3148 . + 0 ID=cds-AD39_RS26750;Parent=gene-AD39_RS26750;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415772.1;locus_tag=AD39_RS26750;partial=true;product=OmpW family outer membrane protein;pseudo=true;start_range=.,3023;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 3208 3714 . - . ID=gene-AD39_RS16760;Name=yciE;gbkey=Gene;gene=yciE;gene_biotype=protein_coding;locus_tag=AD39_RS16760;old_locus_tag=AD39_1424 NZ_JJLH01000019.1 Protein Homology CDS 3208 3714 . - 0 ID=cds-WP_001079509.1;Parent=gene-AD39_RS16760;Dbxref=GenBank:WP_001079509.1;Name=WP_001079509.1;Ontology_term=GO:0046872;gbkey=CDS;gene=yciE;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309856.1;locus_tag=AD39_RS16760;product=ferritin-like domain-containing protein;protein_id=WP_001079509.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 3760 4260 . - . ID=gene-AD39_RS16755;Name=yciF;gbkey=Gene;gene=yciF;gene_biotype=protein_coding;locus_tag=AD39_RS16755;old_locus_tag=AD39_1425 NZ_JJLH01000019.1 Protein Homology CDS 3760 4260 . - 0 ID=cds-WP_001056491.1;Parent=gene-AD39_RS16755;Dbxref=GenBank:WP_001056491.1;Name=WP_001056491.1;Ontology_term=GO:0046872;gbkey=CDS;gene=yciF;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309857.1;locus_tag=AD39_RS16755;product=ferritin-like domain-containing protein;protein_id=WP_001056491.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 4346 4525 . - . ID=gene-AD39_RS16750;Name=yciG;gbkey=Gene;gene=yciG;gene_biotype=protein_coding;locus_tag=AD39_RS16750;old_locus_tag=AD39_1426 NZ_JJLH01000019.1 Protein Homology CDS 4346 4525 . - 0 ID=cds-WP_000807651.1;Parent=gene-AD39_RS16750;Dbxref=GenBank:WP_000807651.1;Name=WP_000807651.1;Ontology_term=GO:0006950;gbkey=CDS;gene=yciG;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309858.2;locus_tag=AD39_RS16750;product=general stress protein;protein_id=WP_000807651.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 4906 5712 . - . ID=gene-AD39_RS16745;Name=trpA;gbkey=Gene;gene=trpA;gene_biotype=protein_coding;locus_tag=AD39_RS16745;old_locus_tag=AD39_1427 NZ_JJLH01000019.1 Protein Homology CDS 4906 5712 . - 0 ID=cds-WP_000443056.1;Parent=gene-AD39_RS16745;Dbxref=GenBank:WP_000443056.1;Name=WP_000443056.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpA;go_function=tryptophan synthase activity|0004834||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415776.1;locus_tag=AD39_RS16745;product=tryptophan synthase subunit alpha;protein_id=WP_000443056.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 5712 6905 . - . ID=gene-AD39_RS16740;Name=trpB;gbkey=Gene;gene=trpB;gene_biotype=protein_coding;locus_tag=AD39_RS16740;old_locus_tag=AD39_1428 NZ_JJLH01000019.1 Protein Homology CDS 5712 6905 . - 0 ID=cds-WP_000209520.1;Parent=gene-AD39_RS16740;Dbxref=GenBank:WP_000209520.1;Name=WP_000209520.1;Ontology_term=GO:0000162,GO:0004834;gbkey=CDS;gene=trpB;go_function=tryptophan synthase activity|0004834||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415777.1;locus_tag=AD39_RS16740;product=tryptophan synthase subunit beta;protein_id=WP_000209520.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 6917 8278 . - . ID=gene-AD39_RS16735;Name=trpCF;gbkey=Gene;gene=trpCF;gene_biotype=protein_coding;locus_tag=AD39_RS16735;old_locus_tag=AD39_1429 NZ_JJLH01000019.1 Protein Homology CDS 6917 8278 . - 0 ID=cds-WP_000983908.1;Parent=gene-AD39_RS16735;Dbxref=GenBank:WP_000983908.1;Name=WP_000983908.1;Ontology_term=GO:0006568,GO:0004425,GO:0004640;gbkey=CDS;gene=trpCF;go_function=indole-3-glycerol-phosphate synthase activity|0004425||IEA,phosphoribosylanthranilate isomerase activity|0004640||IEA;go_process=L-tryptophan metabolic process|0006568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707171.1;locus_tag=AD39_RS16735;product=bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF;protein_id=WP_000983908.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 8279 9874 . - . ID=gene-AD39_RS16730;Name=trpD;gbkey=Gene;gene=trpD;gene_biotype=protein_coding;locus_tag=AD39_RS16730;old_locus_tag=AD39_1430 NZ_JJLH01000019.1 Protein Homology CDS 8279 9874 . - 0 ID=cds-WP_000763511.1;Parent=gene-AD39_RS16730;Dbxref=GenBank:WP_000763511.1;Name=WP_000763511.1;Ontology_term=GO:0000162,GO:0004048;gbkey=CDS;gene=trpD;go_function=anthranilate phosphoribosyltransferase activity|0004048||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008784940.1;locus_tag=AD39_RS16730;product=bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD;protein_id=WP_000763511.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 9874 11436 . - . ID=gene-AD39_RS16725;Name=trpE;gbkey=Gene;gene=trpE;gene_biotype=protein_coding;locus_tag=AD39_RS16725;old_locus_tag=AD39_1431 NZ_JJLH01000019.1 Protein Homology CDS 9874 11436 . - 0 ID=cds-WP_001194591.1;Parent=gene-AD39_RS16725;Dbxref=GenBank:WP_001194591.1;Name=WP_001194591.1;Ontology_term=GO:0000162,GO:0004049;gbkey=CDS;gene=trpE;go_function=anthranilate synthase activity|0004049||IEA;go_process=L-tryptophan biosynthetic process|0000162||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415780.1;locus_tag=AD39_RS16725;product=anthranilate synthase component I;protein_id=WP_001194591.1;transl_table=11 NZ_JJLH01000019.1 cmsearch sequence_feature 11458 11551 . - . ID=id-NZ_JJLH01000019.1:11458..11551;Dbxref=RFAM:RF00513;Note=Trp leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5 NZ_JJLH01000019.1 RefSeq gene 11528 11572 . - . ID=gene-AD39_RS26755;Name=trpL;gbkey=Gene;gene=trpL;gene_biotype=protein_coding;locus_tag=AD39_RS26755 NZ_JJLH01000019.1 Protein Homology CDS 11528 11572 . - 0 ID=cds-WP_001700591.1;Parent=gene-AD39_RS26755;Dbxref=GenBank:WP_001700591.1;Name=WP_001700591.1;gbkey=CDS;gene=trpL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309864.1;locus_tag=AD39_RS26755;product=trp operon leader peptide;protein_id=WP_001700591.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 11710 12591 . + . ID=gene-AD39_RS16720;Name=rnm;gbkey=Gene;gene=rnm;gene_biotype=protein_coding;gene_synonym=trpH,yciV;locus_tag=AD39_RS16720;old_locus_tag=AD39_1432 NZ_JJLH01000019.1 Protein Homology CDS 11710 12591 . + 0 ID=cds-WP_001285661.1;Parent=gene-AD39_RS16720;Dbxref=GenBank:WP_001285661.1;Name=WP_001285661.1;Ontology_term=GO:0006364,GO:0004534,GO:0035312,GO:0097657;gbkey=CDS;gene=rnm;go_function=5'-3' RNA exonuclease activity|0004534||IEA,5'-3' DNA exonuclease activity|0035312||IEA,3'%2C5'-nucleotide bisphosphate phosphatase activity|0097657||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415782.1;locus_tag=AD39_RS16720;product=RNase RNM;protein_id=WP_001285661.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 12588 13208 . + . ID=gene-AD39_RS16715;Name=yciO;gbkey=Gene;gene=yciO;gene_biotype=protein_coding;locus_tag=AD39_RS16715;old_locus_tag=AD39_1433 NZ_JJLH01000019.1 Protein Homology CDS 12588 13208 . + 0 ID=cds-WP_001295575.1;Parent=gene-AD39_RS16715;Dbxref=GenBank:WP_001295575.1;Name=WP_001295575.1;Ontology_term=GO:0006400,GO:0003725,GO:0061710;gbkey=CDS;gene=yciO;go_function=double-stranded RNA binding|0003725||IEA,L-threonylcarbamoyladenylate synthase|0061710||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126434.1;locus_tag=AD39_RS16715;product=L-threonylcarbamoyladenylate synthase;protein_id=WP_001295575.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 13236 15131 . + . ID=gene-AD39_RS16710;Name=yciQ;gbkey=Gene;gene=yciQ;gene_biotype=protein_coding;locus_tag=AD39_RS16710;old_locus_tag=AD39_1434 NZ_JJLH01000019.1 Protein Homology CDS 13236 15131 . + 0 ID=cds-WP_023155296.1;Parent=gene-AD39_RS16710;Dbxref=GenBank:WP_023155296.1;Name=WP_023155296.1;Ontology_term=GO:0005886;gbkey=CDS;gene=yciQ;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415784.1;locus_tag=AD39_RS16710;product=DUF2207 domain-containing protein;protein_id=WP_023155296.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 15343 16218 . + . ID=gene-AD39_RS16705;Name=rluB;gbkey=Gene;gene=rluB;gene_biotype=protein_coding;locus_tag=AD39_RS16705;old_locus_tag=AD39_1435 NZ_JJLH01000019.1 Protein Homology CDS 15343 16218 . + 0 ID=cds-WP_001291217.1;Parent=gene-AD39_RS16705;Dbxref=GenBank:WP_001291217.1;Name=WP_001291217.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=rluB;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415785.1;locus_tag=AD39_RS16705;product=23S rRNA pseudouridine(2605) synthase RluB;protein_id=WP_001291217.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 16388 17389 . + . ID=gene-AD39_RS16700;Name=AD39_RS16700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16700;old_locus_tag=AD39_1436 NZ_JJLH01000019.1 Protein Homology CDS 16388 17389 . + 0 ID=cds-WP_023155297.1;Parent=gene-AD39_RS16700;Dbxref=GenBank:WP_023155297.1;Name=WP_023155297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001599750.1;locus_tag=AD39_RS16700;product=hypothetical protein;protein_id=WP_023155297.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 17400 17708 . + . ID=gene-AD39_RS16695;Name=AD39_RS16695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16695;old_locus_tag=AD39_1437 NZ_JJLH01000019.1 Protein Homology CDS 17400 17708 . + 0 ID=cds-WP_023155298.1;Parent=gene-AD39_RS16695;Dbxref=GenBank:WP_023155298.1;Name=WP_023155298.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001590091.1;locus_tag=AD39_RS16695;product=hypothetical protein;protein_id=WP_023155298.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 17761 18351 . - . ID=gene-AD39_RS16690;Name=cobO;gbkey=Gene;gene=cobO;gene_biotype=protein_coding;locus_tag=AD39_RS16690;old_locus_tag=AD39_1438 NZ_JJLH01000019.1 Protein Homology CDS 17761 18351 . - 0 ID=cds-WP_001278906.1;Parent=gene-AD39_RS16690;Dbxref=GenBank:WP_001278906.1;Name=WP_001278906.1;Ontology_term=GO:0009236,GO:0008817;gbkey=CDS;gene=cobO;go_function=corrinoid adenosyltransferase activity|0008817||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415786.1;locus_tag=AD39_RS16690;product=cob(I)yrinic acid a%2Cc-diamide adenosyltransferase;protein_id=WP_001278906.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 18348 19106 . - . ID=gene-AD39_RS16685;Name=yciK;gbkey=Gene;gene=yciK;gene_biotype=protein_coding;locus_tag=AD39_RS16685;old_locus_tag=AD39_1439 NZ_JJLH01000019.1 Protein Homology CDS 18348 19106 . - 0 ID=cds-WP_000559274.1;Parent=gene-AD39_RS16685;Dbxref=GenBank:WP_000559274.1;Name=WP_000559274.1;Ontology_term=GO:0016491;gbkey=CDS;gene=yciK;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309870.1;locus_tag=AD39_RS16685;product=YciK family oxidoreductase;protein_id=WP_000559274.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 19326 20375 . + . ID=gene-AD39_RS16680;Name=sohB;gbkey=Gene;gene=sohB;gene_biotype=protein_coding;locus_tag=AD39_RS16680;old_locus_tag=AD39_1440 NZ_JJLH01000019.1 Protein Homology CDS 19326 20375 . + 0 ID=cds-WP_000422045.1;Parent=gene-AD39_RS16680;Dbxref=GenBank:WP_000422045.1;Name=WP_000422045.1;Ontology_term=GO:0006508,GO:0008233;gbkey=CDS;gene=sohB;go_function=peptidase activity|0008233||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415788.1;locus_tag=AD39_RS16680;product=protease SohB;protein_id=WP_000422045.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 20411 20662 . - . ID=gene-AD39_RS16675;Name=yciN;gbkey=Gene;gene=yciN;gene_biotype=protein_coding;locus_tag=AD39_RS16675;old_locus_tag=AD39_1441 NZ_JJLH01000019.1 Protein Homology CDS 20411 20662 . - 0 ID=cds-WP_001031530.1;Parent=gene-AD39_RS16675;Dbxref=GenBank:WP_001031530.1;Name=WP_001031530.1;gbkey=CDS;gene=yciN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309872.1;locus_tag=AD39_RS16675;product=YciN family protein;protein_id=WP_001031530.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 21042 23639 . + . ID=gene-AD39_RS16670;Name=topA;gbkey=Gene;gene=topA;gene_biotype=protein_coding;locus_tag=AD39_RS16670;old_locus_tag=AD39_1442 NZ_JJLH01000019.1 Protein Homology CDS 21042 23639 . + 0 ID=cds-WP_001297122.1;Parent=gene-AD39_RS16670;Dbxref=GenBank:WP_001297122.1;Name=WP_001297122.1;Ontology_term=GO:0006260,GO:0006265,GO:0003677,GO:0003917,GO:0005737;gbkey=CDS;gene=topA;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type I (single strand cut%2C ATP-independent) activity|0003917||IEA;go_process=DNA replication|0006260||IEA,DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000513601.1;locus_tag=AD39_RS16670;product=type I DNA topoisomerase;protein_id=WP_001297122.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 23849 24823 . + . ID=gene-AD39_RS16665;Name=cysB;gbkey=Gene;gene=cysB;gene_biotype=protein_coding;locus_tag=AD39_RS16665;old_locus_tag=AD39_1443 NZ_JJLH01000019.1 Protein Homology CDS 23849 24823 . + 0 ID=cds-WP_000776253.1;Parent=gene-AD39_RS16665;Dbxref=GenBank:WP_000776253.1;Name=WP_000776253.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=cysB;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012017585.1;locus_tag=AD39_RS16665;product=HTH-type transcriptional regulator CysB;protein_id=WP_000776253.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 25142 25282 . + . ID=gene-AD39_RS16660;Name=ymiA;gbkey=Gene;gene=ymiA;gene_biotype=protein_coding;locus_tag=AD39_RS16660;old_locus_tag=AD39_1444 NZ_JJLH01000019.1 Protein Homology CDS 25142 25282 . + 0 ID=cds-WP_001300896.1;Parent=gene-AD39_RS16660;Dbxref=GenBank:WP_001300896.1;Name=WP_001300896.1;gbkey=CDS;gene=ymiA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588449.3;locus_tag=AD39_RS16660;product=YmiA family putative membrane protein;protein_id=WP_001300896.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 25285 25452 . + . ID=gene-AD39_RS16655;Name=yciX;gbkey=Gene;gene=yciX;gene_biotype=protein_coding;locus_tag=AD39_RS16655;old_locus_tag=AD39_1445 NZ_JJLH01000019.1 Protein Homology CDS 25285 25452 . + 0 ID=cds-WP_001297116.1;Parent=gene-AD39_RS16655;Dbxref=GenBank:WP_001297116.1;Name=WP_001297116.1;gbkey=CDS;gene=yciX;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588450.2;locus_tag=AD39_RS16655;product=protein YciX;protein_id=WP_001297116.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 25566 25661 . + . ID=gene-AD39_RS28975;Name=ymiC;gbkey=Gene;gene=ymiC;gene_biotype=protein_coding;locus_tag=AD39_RS28975 NZ_JJLH01000019.1 Protein Homology CDS 25566 25661 . + 0 ID=cds-WP_001310756.1;Parent=gene-AD39_RS28975;Dbxref=GenBank:WP_001310756.1;Name=WP_001310756.1;gbkey=CDS;gene=ymiC;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518771.1;locus_tag=AD39_RS28975;product=small membrane protein YmiC;protein_id=WP_001310756.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 25825 28500 . + . ID=gene-AD39_RS16650;Name=acnA;gbkey=Gene;gene=acnA;gene_biotype=protein_coding;locus_tag=AD39_RS16650;old_locus_tag=AD39_1446 NZ_JJLH01000019.1 Protein Homology CDS 25825 28500 . + 0 ID=cds-WP_000099513.1;Parent=gene-AD39_RS16650;Dbxref=GenBank:WP_000099513.1;Name=WP_000099513.1;Ontology_term=GO:0006099,GO:0003994;gbkey=CDS;gene=acnA;go_function=aconitate hydratase activity|0003994||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415792.1;locus_tag=AD39_RS16650;product=aconitate hydratase AcnA;protein_id=WP_000099513.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 28564 29154 . - . ID=gene-AD39_RS16645;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=AD39_RS16645;old_locus_tag=AD39_1447 NZ_JJLH01000019.1 Protein Homology CDS 28564 29154 . - 0 ID=cds-WP_001176295.1;Parent=gene-AD39_RS16645;Dbxref=GenBank:WP_001176295.1;Name=WP_001176295.1;Ontology_term=GO:0003935;gbkey=CDS;gene=ribA;go_function=GTP cyclohydrolase II activity|0003935||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309877.1;locus_tag=AD39_RS16645;product=GTP cyclohydrolase II;protein_id=WP_001176295.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 29324 30088 . + . ID=gene-AD39_RS16640;Name=pgpB;gbkey=Gene;gene=pgpB;gene_biotype=protein_coding;locus_tag=AD39_RS16640;old_locus_tag=AD39_1448 NZ_JJLH01000019.1 Protein Homology CDS 29324 30088 . + 0 ID=cds-WP_001256538.1;Parent=gene-AD39_RS16640;Dbxref=GenBank:WP_001256538.1;Name=WP_001256538.1;Ontology_term=GO:0008654,GO:0004609;gbkey=CDS;gene=pgpB;go_function=phosphatidylserine decarboxylase activity|0004609||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309878.1;locus_tag=AD39_RS16640;product=phosphatidylglycerophosphatase B;protein_id=WP_001256538.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 30237 30545 . + . ID=gene-AD39_RS16635;Name=lapA;gbkey=Gene;gene=lapA;gene_biotype=protein_coding;locus_tag=AD39_RS16635;old_locus_tag=AD39_1449 NZ_JJLH01000019.1 Protein Homology CDS 30237 30545 . + 0 ID=cds-WP_000876286.1;Parent=gene-AD39_RS16635;Dbxref=GenBank:WP_000876286.1;Name=WP_000876286.1;gbkey=CDS;gene=lapA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415795.1;locus_tag=AD39_RS16635;product=lipopolysaccharide assembly protein LapA;protein_id=WP_000876286.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 30552 31721 . + . ID=gene-AD39_RS16630;Name=lapB;gbkey=Gene;gene=lapB;gene_biotype=protein_coding;locus_tag=AD39_RS16630;old_locus_tag=AD39_1450 NZ_JJLH01000019.1 Protein Homology CDS 30552 31721 . + 0 ID=cds-WP_000891350.1;Parent=gene-AD39_RS16630;Dbxref=GenBank:WP_000891350.1;Name=WP_000891350.1;Ontology_term=GO:0008653,GO:0005515;gbkey=CDS;gene=lapB;go_function=protein binding|0005515||IEA;go_process=lipopolysaccharide metabolic process|0008653||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309880.1;locus_tag=AD39_RS16630;product=lipopolysaccharide assembly protein LapB;protein_id=WP_000891350.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 31914 32651 . + . ID=gene-AD39_RS16625;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;locus_tag=AD39_RS16625;old_locus_tag=AD39_1452 NZ_JJLH01000019.1 Protein Homology CDS 31914 32651 . + 0 ID=cds-WP_000176278.1;Parent=gene-AD39_RS16625;Dbxref=GenBank:WP_000176278.1;Name=WP_000176278.1;Ontology_term=GO:0006207,GO:0044205,GO:0004590;gbkey=CDS;gene=pyrF;go_function=orotidine-5'-phosphate decarboxylase activity|0004590||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA,'de novo' UMP biosynthetic process|0044205||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415797.1;locus_tag=AD39_RS16625;product=orotidine-5'-phosphate decarboxylase;protein_id=WP_000176278.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 32651 32977 . + . ID=gene-AD39_RS16620;Name=yciH;gbkey=Gene;gene=yciH;gene_biotype=protein_coding;locus_tag=AD39_RS16620;old_locus_tag=AD39_1453 NZ_JJLH01000019.1 Protein Homology CDS 32651 32977 . + 0 ID=cds-WP_001295580.1;Parent=gene-AD39_RS16620;Dbxref=GenBank:WP_001295580.1;Name=WP_001295580.1;gbkey=CDS;gene=yciH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415798.2;locus_tag=AD39_RS16620;product=stress response translation initiation inhibitor YciH;protein_id=WP_001295580.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 33103 33321 . - . ID=gene-AD39_RS16615;Name=osmB;gbkey=Gene;gene=osmB;gene_biotype=protein_coding;locus_tag=AD39_RS16615;old_locus_tag=AD39_1454 NZ_JJLH01000019.1 Protein Homology CDS 33103 33321 . - 0 ID=cds-WP_000498253.1;Parent=gene-AD39_RS16615;Dbxref=GenBank:WP_000498253.1;Name=WP_000498253.1;gbkey=CDS;gene=osmB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309883.1;locus_tag=AD39_RS16615;product=osmotically-inducible lipoprotein OsmB;protein_id=WP_000498253.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 33590 34339 . - . ID=gene-AD39_RS16610;Name=yciT;gbkey=Gene;gene=yciT;gene_biotype=protein_coding;locus_tag=AD39_RS16610;old_locus_tag=AD39_1455 NZ_JJLH01000019.1 Protein Homology CDS 33590 34339 . - 0 ID=cds-WP_001088621.1;Parent=gene-AD39_RS16610;Dbxref=GenBank:WP_001088621.1;Name=WP_001088621.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yciT;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309884.1;locus_tag=AD39_RS16610;product=DNA-binding transcriptional regulator YciT;protein_id=WP_001088621.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 34429 34602 . - . ID=gene-AD39_RS16605;Name=yciZ;gbkey=Gene;gene=yciZ;gene_biotype=protein_coding;locus_tag=AD39_RS16605;old_locus_tag=AD39_1456 NZ_JJLH01000019.1 Protein Homology CDS 34429 34602 . - 0 ID=cds-WP_001288368.1;Parent=gene-AD39_RS16605;Dbxref=GenBank:WP_001288368.1;Name=WP_001288368.1;gbkey=CDS;gene=yciZ;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165317.1;locus_tag=AD39_RS16605;product=YciZ family protein;protein_id=WP_001288368.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 34639 34767 . + . ID=gene-AD39_RS29670;Name=ymiD;gbkey=Gene;gene=ymiD;gene_biotype=protein_coding;locus_tag=AD39_RS29670 NZ_JJLH01000019.1 Protein Homology CDS 34639 34767 . + 0 ID=cds-WP_212981649.1;Parent=gene-AD39_RS29670;Dbxref=GenBank:WP_212981649.1;Name=WP_212981649.1;gbkey=CDS;gene=ymiD;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051182.1;locus_tag=AD39_RS29670;product=protein YmiD;protein_id=WP_212981649.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 34749 36734 . - . ID=gene-AD39_RS16600;Name=pdeR;gbkey=Gene;gene=pdeR;gene_biotype=protein_coding;locus_tag=AD39_RS16600;old_locus_tag=AD39_1457 NZ_JJLH01000019.1 Protein Homology CDS 34749 36734 . - 0 ID=cds-WP_000859953.1;Parent=gene-AD39_RS16600;Dbxref=GenBank:WP_000859953.1;Name=WP_000859953.1;gbkey=CDS;gene=pdeR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415801.1;locus_tag=AD39_RS16600;product=cyclic di-GMP phosphodiesterase;protein_id=WP_000859953.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 36788 36892 . + . ID=gene-AD39_RS28355;Name=AD39_RS28355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28355 NZ_JJLH01000019.1 Protein Homology CDS 36788 36892 . + 0 ID=cds-WP_000221855.1;Parent=gene-AD39_RS28355;Dbxref=GenBank:WP_000221855.1;Name=WP_000221855.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791239.1;locus_tag=AD39_RS28355;product=hypothetical protein;protein_id=WP_000221855.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 36970 38904 . - . ID=gene-AD39_RS16595;Name=rnb;gbkey=Gene;gene=rnb;gene_biotype=protein_coding;locus_tag=AD39_RS16595;old_locus_tag=AD39_1458 NZ_JJLH01000019.1 Protein Homology CDS 36970 38904 . - 0 ID=cds-WP_023155300.1;Parent=gene-AD39_RS16595;Dbxref=GenBank:WP_023155300.1;Name=WP_023155300.1;Ontology_term=GO:0006401,GO:0003723,GO:0008859;gbkey=CDS;gene=rnb;go_function=RNA binding|0003723||IEA,exoribonuclease II activity|0008859||IEA;go_process=RNA catabolic process|0006401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415802.1;locus_tag=AD39_RS16595;product=exoribonuclease II;protein_id=WP_023155300.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 38972 40099 . - . ID=gene-AD39_RS16590;Name=yciW;gbkey=Gene;gene=yciW;gene_biotype=protein_coding;locus_tag=AD39_RS16590;old_locus_tag=AD39_1459 NZ_JJLH01000019.1 Protein Homology CDS 38972 40099 . - 0 ID=cds-WP_000437858.1;Parent=gene-AD39_RS16590;Dbxref=GenBank:WP_000437858.1;Name=WP_000437858.1;gbkey=CDS;gene=yciW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309887.2;locus_tag=AD39_RS16590;product=carboxymuconolactone decarboxylase family protein;protein_id=WP_000437858.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 40244 41032 . - . ID=gene-AD39_RS16585;Name=fabI;gbkey=Gene;gene=fabI;gene_biotype=protein_coding;locus_tag=AD39_RS16585;old_locus_tag=AD39_1460 NZ_JJLH01000019.1 Protein Homology CDS 40244 41032 . - 0 ID=cds-WP_000506490.1;Parent=gene-AD39_RS16585;Dbxref=GenBank:WP_000506490.1;Name=WP_000506490.1;gbkey=CDS;gene=fabI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126472.1;locus_tag=AD39_RS16585;product=enoyl-ACP reductase FabI;protein_id=WP_000506490.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 41402 41755 . - . ID=gene-AD39_RS16580;Name=ycjD;gbkey=Gene;gene=ycjD;gene_biotype=protein_coding;locus_tag=AD39_RS16580;old_locus_tag=AD39_1461 NZ_JJLH01000019.1 Protein Homology CDS 41402 41755 . - 0 ID=cds-WP_000968850.1;Parent=gene-AD39_RS16580;Dbxref=GenBank:WP_000968850.1;Name=WP_000968850.1;gbkey=CDS;gene=ycjD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707198.1;locus_tag=AD39_RS16580;product=DUF559 domain-containing protein;protein_id=WP_000968850.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 41823 42629 . - . ID=gene-AD39_RS16575;Name=sapF;gbkey=Gene;gene=sapF;gene_biotype=protein_coding;locus_tag=AD39_RS16575;old_locus_tag=AD39_1462 NZ_JJLH01000019.1 Protein Homology CDS 41823 42629 . - 0 ID=cds-WP_000573407.1;Parent=gene-AD39_RS16575;Dbxref=GenBank:WP_000573407.1;Name=WP_000573407.1;gbkey=CDS;gene=sapF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415806.1;locus_tag=AD39_RS16575;product=peptide ABC transporter ATP-binding protein SapF;protein_id=WP_000573407.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 42631 43623 . - . ID=gene-AD39_RS16570;Name=sapD;gbkey=Gene;gene=sapD;gene_biotype=protein_coding;locus_tag=AD39_RS16570;old_locus_tag=AD39_1463 NZ_JJLH01000019.1 Protein Homology CDS 42631 43623 . - 0 ID=cds-WP_001128858.1;Parent=gene-AD39_RS16570;Dbxref=GenBank:WP_001128858.1;Name=WP_001128858.1;gbkey=CDS;gene=sapD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309895.1;locus_tag=AD39_RS16570;product=peptide ABC transporter ATP-binding protein SapD;protein_id=WP_001128858.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 43623 44513 . - . ID=gene-AD39_RS16565;Name=sapC;gbkey=Gene;gene=sapC;gene_biotype=protein_coding;locus_tag=AD39_RS16565;old_locus_tag=AD39_1464 NZ_JJLH01000019.1 Protein Homology CDS 43623 44513 . - 0 ID=cds-WP_001146163.1;Parent=gene-AD39_RS16565;Dbxref=GenBank:WP_001146163.1;Name=WP_001146163.1;gbkey=CDS;gene=sapC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415808.1;locus_tag=AD39_RS16565;product=peptide ABC transporter permease SapC;protein_id=WP_001146163.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 44500 45465 . - . ID=gene-AD39_RS16560;Name=sapB;gbkey=Gene;gene=sapB;gene_biotype=protein_coding;locus_tag=AD39_RS16560;old_locus_tag=AD39_1465 NZ_JJLH01000019.1 Protein Homology CDS 44500 45465 . - 0 ID=cds-WP_000583258.1;Parent=gene-AD39_RS16560;Dbxref=GenBank:WP_000583258.1;Name=WP_000583258.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=sapB;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126482.1;locus_tag=AD39_RS16560;product=putrescine export ABC transporter permease SapB;protein_id=WP_000583258.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 45462 47105 . - . ID=gene-AD39_RS16555;Name=sapA;gbkey=Gene;gene=sapA;gene_biotype=protein_coding;locus_tag=AD39_RS16555;old_locus_tag=AD39_1466 NZ_JJLH01000019.1 Protein Homology CDS 45462 47105 . - 0 ID=cds-WP_001250213.1;Parent=gene-AD39_RS16555;Dbxref=GenBank:WP_001250213.1;Name=WP_001250213.1;Ontology_term=GO:0055085,GO:0043190;gbkey=CDS;gene=sapA;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415810.1;locus_tag=AD39_RS16555;product=ABC transporter substrate-binding protein SapA;protein_id=WP_001250213.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 47418 47663 . - . ID=gene-AD39_RS16550;Name=ymjA;gbkey=Gene;gene=ymjA;gene_biotype=protein_coding;locus_tag=AD39_RS16550;old_locus_tag=AD39_1467 NZ_JJLH01000019.1 Protein Homology CDS 47418 47663 . - 0 ID=cds-WP_001015110.1;Parent=gene-AD39_RS16550;Dbxref=GenBank:WP_001015110.1;Name=WP_001015110.1;gbkey=CDS;gene=ymjA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415811.1;locus_tag=AD39_RS16550;product=YmjA family protein;protein_id=WP_001015110.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 47797 49182 . - . ID=gene-AD39_RS16545;Name=puuP;gbkey=Gene;gene=puuP;gene_biotype=protein_coding;locus_tag=AD39_RS16545;old_locus_tag=AD39_1468 NZ_JJLH01000019.1 Protein Homology CDS 47797 49182 . - 0 ID=cds-WP_001342099.1;Parent=gene-AD39_RS16545;Dbxref=GenBank:WP_001342099.1;Name=WP_001342099.1;gbkey=CDS;gene=puuP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707205.2;locus_tag=AD39_RS16545;product=putrescine/proton symporter PuuP;protein_id=WP_001342099.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 49172 49336 . - . ID=gene-AD39_RS28980;Name=AD39_RS28980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28980 NZ_JJLH01000019.1 Protein Homology CDS 49172 49336 . - 0 ID=cds-WP_120795382.1;Parent=gene-AD39_RS28980;Dbxref=GenBank:WP_120795382.1;Name=WP_120795382.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518772.1;locus_tag=AD39_RS28980;product=protein YmjE;protein_id=WP_120795382.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 49485 50903 . - . ID=gene-AD39_RS16540;Name=puuA;gbkey=Gene;gene=puuA;gene_biotype=protein_coding;locus_tag=AD39_RS16540;old_locus_tag=AD39_1469 NZ_JJLH01000019.1 Protein Homology CDS 49485 50903 . - 0 ID=cds-WP_001296746.1;Parent=gene-AD39_RS16540;Dbxref=GenBank:WP_001296746.1;Name=WP_001296746.1;gbkey=CDS;gene=puuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415813.4;locus_tag=AD39_RS16540;product=glutamate-putrescine ligase;protein_id=WP_001296746.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 51115 51879 . + . ID=gene-AD39_RS16535;Name=puuD;gbkey=Gene;gene=puuD;gene_biotype=protein_coding;locus_tag=AD39_RS16535;old_locus_tag=AD39_1470 NZ_JJLH01000019.1 Protein Homology CDS 51115 51879 . + 0 ID=cds-WP_001307158.1;Parent=gene-AD39_RS16535;Dbxref=GenBank:WP_001307158.1;Name=WP_001307158.1;Ontology_term=GO:0016787;gbkey=CDS;gene=puuD;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415814.4;locus_tag=AD39_RS16535;product=gamma-glutamyl-gamma-aminobutyrate hydrolase;protein_id=WP_001307158.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 51906 52463 . + . ID=gene-AD39_RS16530;Name=puuR;gbkey=Gene;gene=puuR;gene_biotype=protein_coding;locus_tag=AD39_RS16530;old_locus_tag=AD39_1471 NZ_JJLH01000019.1 Protein Homology CDS 51906 52463 . + 0 ID=cds-WP_001278727.1;Parent=gene-AD39_RS16530;Dbxref=GenBank:WP_001278727.1;Name=WP_001278727.1;gbkey=CDS;gene=puuR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001464354.1;locus_tag=AD39_RS16530;product=HTH-type transcriptional regulator PuuR;protein_id=WP_001278727.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 52738 54225 . + . ID=gene-AD39_RS16525;Name=puuC;gbkey=Gene;gene=puuC;gene_biotype=protein_coding;locus_tag=AD39_RS16525;old_locus_tag=AD39_1472 NZ_JJLH01000019.1 Protein Homology CDS 52738 54225 . + 0 ID=cds-WP_001009100.1;Parent=gene-AD39_RS16525;Dbxref=GenBank:WP_001009100.1;Name=WP_001009100.1;Ontology_term=GO:0016620;gbkey=CDS;gene=puuC;go_function=oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415816.1;locus_tag=AD39_RS16525;product=aldehyde dehydrogenase PuuC;protein_id=WP_001009100.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 54227 55507 . + . ID=gene-AD39_RS16520;Name=puuB;gbkey=Gene;gene=puuB;gene_biotype=protein_coding;locus_tag=AD39_RS16520;old_locus_tag=AD39_1473 NZ_JJLH01000019.1 Protein Homology CDS 54227 55507 . + 0 ID=cds-WP_000134870.1;Parent=gene-AD39_RS16520;Dbxref=GenBank:WP_000134870.1;Name=WP_000134870.1;gbkey=CDS;gene=puuB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415817.1;locus_tag=AD39_RS16520;product=gamma-glutamylputrescine oxidase;protein_id=WP_000134870.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 55545 56810 . + . ID=gene-AD39_RS16515;Name=puuE;gbkey=Gene;gene=puuE;gene_biotype=protein_coding;locus_tag=AD39_RS16515;old_locus_tag=AD39_1474 NZ_JJLH01000019.1 Protein Homology CDS 55545 56810 . + 0 ID=cds-WP_000069228.1;Parent=gene-AD39_RS16515;Dbxref=GenBank:WP_000069228.1;Name=WP_000069228.1;Ontology_term=GO:0009448;gbkey=CDS;gene=puuE;go_process=gamma-aminobutyric acid metabolic process|0009448||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415818.1;locus_tag=AD39_RS16515;product=4-aminobutyrate transaminase;protein_id=WP_000069228.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 56930 57907 . - . ID=gene-AD39_RS16510;Name=pspF;gbkey=Gene;gene=pspF;gene_biotype=protein_coding;locus_tag=AD39_RS16510;old_locus_tag=AD39_1475 NZ_JJLH01000019.1 Protein Homology CDS 56930 57907 . - 0 ID=cds-WP_000852835.1;Parent=gene-AD39_RS16510;Dbxref=GenBank:WP_000852835.1;Name=WP_000852835.1;gbkey=CDS;gene=pspF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309907.2;locus_tag=AD39_RS16510;product=phage shock protein operon transcriptional activator;protein_id=WP_000852835.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 58074 58742 . + . ID=gene-AD39_RS16505;Name=pspA;gbkey=Gene;gene=pspA;gene_biotype=protein_coding;locus_tag=AD39_RS16505;old_locus_tag=AD39_1476 NZ_JJLH01000019.1 Protein Homology CDS 58074 58742 . + 0 ID=cds-WP_000511025.1;Parent=gene-AD39_RS16505;Dbxref=GenBank:WP_000511025.1;Name=WP_000511025.1;gbkey=CDS;gene=pspA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309908.1;locus_tag=AD39_RS16505;product=phage shock protein PspA;protein_id=WP_000511025.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 58796 59020 . + . ID=gene-AD39_RS16500;Name=pspB;gbkey=Gene;gene=pspB;gene_biotype=protein_coding;locus_tag=AD39_RS16500;old_locus_tag=AD39_1477 NZ_JJLH01000019.1 Protein Homology CDS 58796 59020 . + 0 ID=cds-WP_001274963.1;Parent=gene-AD39_RS16500;Dbxref=GenBank:WP_001274963.1;Name=WP_001274963.1;Ontology_term=GO:0009271;gbkey=CDS;gene=pspB;go_process=phage shock|0009271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309909.1;locus_tag=AD39_RS16500;product=envelope stress response membrane protein PspB;protein_id=WP_001274963.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 59020 59379 . + . ID=gene-AD39_RS16495;Name=pspC;gbkey=Gene;gene=pspC;gene_biotype=protein_coding;locus_tag=AD39_RS16495;old_locus_tag=AD39_1478 NZ_JJLH01000019.1 Protein Homology CDS 59020 59379 . + 0 ID=cds-WP_000907387.1;Parent=gene-AD39_RS16495;Dbxref=GenBank:WP_000907387.1;Name=WP_000907387.1;gbkey=CDS;gene=pspC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309910.1;locus_tag=AD39_RS16495;product=envelope stress response membrane protein PspC;protein_id=WP_000907387.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 59388 59609 . + . ID=gene-AD39_RS16490;Name=pspD;gbkey=Gene;gene=pspD;gene_biotype=protein_coding;locus_tag=AD39_RS16490;old_locus_tag=AD39_1479 NZ_JJLH01000019.1 Protein Homology CDS 59388 59609 . + 0 ID=cds-WP_001295585.1;Parent=gene-AD39_RS16490;Dbxref=GenBank:WP_001295585.1;Name=WP_001295585.1;gbkey=CDS;gene=pspD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309911.1;locus_tag=AD39_RS16490;product=phage shock protein PspD;protein_id=WP_001295585.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 59684 59998 . + . ID=gene-AD39_RS16485;Name=pspE;gbkey=Gene;gene=pspE;gene_biotype=protein_coding;locus_tag=AD39_RS16485;old_locus_tag=AD39_1480 NZ_JJLH01000019.1 Protein Homology CDS 59684 59998 . + 0 ID=cds-WP_000473109.1;Parent=gene-AD39_RS16485;Dbxref=GenBank:WP_000473109.1;Name=WP_000473109.1;gbkey=CDS;gene=pspE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415824.1;locus_tag=AD39_RS16485;product=thiosulfate sulfurtransferase PspE;protein_id=WP_000473109.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 60212 61891 . + . ID=gene-AD39_RS16480;Name=ycjM;gbkey=Gene;gene=ycjM;gene_biotype=protein_coding;locus_tag=AD39_RS16480;old_locus_tag=AD39_1482 NZ_JJLH01000019.1 Protein Homology CDS 60212 61891 . + 0 ID=cds-WP_000810488.1;Parent=gene-AD39_RS16480;Dbxref=GenBank:WP_000810488.1;Name=WP_000810488.1;gbkey=CDS;gene=ycjM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415825.4;locus_tag=AD39_RS16480;product=glucosylglycerate phosphorylase;protein_id=WP_000810488.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 61905 63197 . + . ID=gene-AD39_RS16475;Name=ycjN;gbkey=Gene;gene=ycjN;gene_biotype=protein_coding;locus_tag=AD39_RS16475;old_locus_tag=AD39_1483 NZ_JJLH01000019.1 Protein Homology CDS 61905 63197 . + 0 ID=cds-WP_001460839.1;Parent=gene-AD39_RS16475;Dbxref=GenBank:WP_001460839.1;Name=WP_001460839.1;Ontology_term=GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;gene=ycjN;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415826.1;locus_tag=AD39_RS16475;product=ABC transporter substrate-binding protein;protein_id=WP_001460839.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 63218 64099 . + . ID=gene-AD39_RS16470;Name=ycjO;gbkey=Gene;gene=ycjO;gene_biotype=protein_coding;locus_tag=AD39_RS16470;old_locus_tag=AD39_1484 NZ_JJLH01000019.1 Protein Homology CDS 63218 64099 . + 0 ID=cds-WP_001080790.1;Parent=gene-AD39_RS16470;Dbxref=GenBank:WP_001080790.1;Name=WP_001080790.1;Ontology_term=GO:0008643,GO:0055085,GO:0042626,GO:0140359;gbkey=CDS;gene=ycjO;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415827.1;locus_tag=AD39_RS16470;product=carbohydrate ABC transporter permease;protein_id=WP_001080790.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 64086 64928 . + . ID=gene-AD39_RS16465;Name=ycjP;gbkey=Gene;gene=ycjP;gene_biotype=protein_coding;locus_tag=AD39_RS16465;old_locus_tag=AD39_1485 NZ_JJLH01000019.1 Protein Homology CDS 64086 64928 . + 0 ID=cds-WP_000224659.1;Parent=gene-AD39_RS16465;Dbxref=GenBank:WP_000224659.1;Name=WP_000224659.1;Ontology_term=GO:0008643,GO:0055085;gbkey=CDS;gene=ycjP;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415828.1;locus_tag=AD39_RS16465;product=carbohydrate ABC transporter permease;protein_id=WP_000224659.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 64959 66011 . + . ID=gene-AD39_RS16460;Name=ycjQ;gbkey=Gene;gene=ycjQ;gene_biotype=protein_coding;locus_tag=AD39_RS16460;old_locus_tag=AD39_1486 NZ_JJLH01000019.1 Protein Homology CDS 64959 66011 . + 0 ID=cds-WP_000737334.1;Parent=gene-AD39_RS16460;Dbxref=GenBank:WP_000737334.1;Name=WP_000737334.1;Ontology_term=GO:0008270,GO:0016616,GO:0030554;gbkey=CDS;gene=ycjQ;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,adenyl nucleotide binding|0030554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415829.1;locus_tag=AD39_RS16460;product=zinc-dependent alcohol dehydrogenase;protein_id=WP_000737334.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 66029 66817 . + . ID=gene-AD39_RS16455;Name=ycjR;gbkey=Gene;gene=ycjR;gene_biotype=protein_coding;locus_tag=AD39_RS16455;old_locus_tag=AD39_1487 NZ_JJLH01000019.1 Protein Homology CDS 66029 66817 . + 0 ID=cds-WP_001542860.1;Parent=gene-AD39_RS16455;Dbxref=GenBank:WP_001542860.1;Name=WP_001542860.1;Ontology_term=GO:0003824,GO:0016853;gbkey=CDS;gene=ycjR;go_function=catalytic activity|0003824||IEA,isomerase activity|0016853||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415830.2;locus_tag=AD39_RS16455;product=sugar phosphate isomerase/epimerase family protein;protein_id=WP_001542860.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 66827 67882 . + . ID=gene-AD39_RS16450;Name=ycjS;gbkey=Gene;gene=ycjS;gene_biotype=protein_coding;locus_tag=AD39_RS16450;old_locus_tag=AD39_1488 NZ_JJLH01000019.1 Protein Homology CDS 66827 67882 . + 0 ID=cds-WP_077757158.1;Parent=gene-AD39_RS16450;Dbxref=GenBank:WP_077757158.1;Name=WP_077757158.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;gene=ycjS;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415831.1;locus_tag=AD39_RS16450;product=Gfo/Idh/MocA family protein;protein_id=WP_077757158.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 67879 70146 . + . ID=gene-AD39_RS16445;Name=ycjT;gbkey=Gene;gene=ycjT;gene_biotype=protein_coding;locus_tag=AD39_RS16445;old_locus_tag=AD39_1489 NZ_JJLH01000019.1 Protein Homology CDS 67879 70146 . + 0 ID=cds-WP_000198012.1;Parent=gene-AD39_RS16445;Dbxref=GenBank:WP_000198012.1;Name=WP_000198012.1;gbkey=CDS;gene=ycjT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309922.1;locus_tag=AD39_RS16445;product=kojibiose phosphorylase;protein_id=WP_000198012.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 70143 70802 . + . ID=gene-AD39_RS16440;Name=pgmB;gbkey=Gene;gene=pgmB;gene_biotype=protein_coding;locus_tag=AD39_RS16440;old_locus_tag=AD39_1490 NZ_JJLH01000019.1 Protein Homology CDS 70143 70802 . + 0 ID=cds-WP_000775799.1;Parent=gene-AD39_RS16440;Dbxref=GenBank:WP_000775799.1;Name=WP_000775799.1;Ontology_term=GO:0005975,GO:0000287,GO:0008801;gbkey=CDS;gene=pgmB;go_function=magnesium ion binding|0000287||IEA,beta-phosphoglucomutase activity|0008801||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415833.1;locus_tag=AD39_RS16440;product=beta-phosphoglucomutase;protein_id=WP_000775799.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 70816 71898 . + . ID=gene-AD39_RS16435;Name=AD39_RS16435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16435;old_locus_tag=AD39_1491 NZ_JJLH01000019.1 Protein Homology CDS 70816 71898 . + 0 ID=cds-WP_000057977.1;Parent=gene-AD39_RS16435;Dbxref=GenBank:WP_000057977.1;Name=WP_000057977.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309924.1;locus_tag=AD39_RS16435;product=ABC transporter ATP-binding protein;protein_id=WP_000057977.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 71943 72848 . + . ID=gene-AD39_RS16430;Name=ompG;gbkey=Gene;gene=ompG;gene_biotype=protein_coding;locus_tag=AD39_RS16430;old_locus_tag=AD39_1492 NZ_JJLH01000019.1 Protein Homology CDS 71943 72848 . + 0 ID=cds-WP_000735257.1;Parent=gene-AD39_RS16430;Dbxref=GenBank:WP_000735257.1;Name=WP_000735257.1;gbkey=CDS;gene=ompG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415835.1;locus_tag=AD39_RS16430;product=monomeric porin OmpG;protein_id=WP_000735257.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 72959 73957 . - . ID=gene-AD39_RS16425;Name=ycjW;gbkey=Gene;gene=ycjW;gene_biotype=protein_coding;locus_tag=AD39_RS16425;old_locus_tag=AD39_1493 NZ_JJLH01000019.1 Protein Homology CDS 72959 73957 . - 0 ID=cds-WP_001593312.1;Parent=gene-AD39_RS16425;Dbxref=GenBank:WP_001593312.1;Name=WP_001593312.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=ycjW;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415836.1;locus_tag=AD39_RS16425;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_001593312.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 74112 75509 . + . ID=gene-AD39_RS16420;Name=ycjX;gbkey=Gene;gene=ycjX;gene_biotype=protein_coding;locus_tag=AD39_RS16420;old_locus_tag=AD39_1494 NZ_JJLH01000019.1 Protein Homology CDS 74112 75509 . + 0 ID=cds-WP_000825784.1;Parent=gene-AD39_RS16420;Dbxref=GenBank:WP_000825784.1;Name=WP_000825784.1;gbkey=CDS;gene=ycjX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005126510.1;locus_tag=AD39_RS16420;product=YcjX family protein;protein_id=WP_000825784.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 75506 76567 . + . ID=gene-AD39_RS16415;Name=ycjF;gbkey=Gene;gene=ycjF;gene_biotype=protein_coding;locus_tag=AD39_RS16415;old_locus_tag=AD39_1495 NZ_JJLH01000019.1 Protein Homology CDS 75506 76567 . + 0 ID=cds-WP_000138717.1;Parent=gene-AD39_RS16415;Dbxref=GenBank:WP_000138717.1;Name=WP_000138717.1;gbkey=CDS;gene=ycjF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415838.1;locus_tag=AD39_RS16415;product=YcjF family protein;protein_id=WP_000138717.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 76715 78256 . + . ID=gene-AD39_RS16410;Name=tyrR;gbkey=Gene;gene=tyrR;gene_biotype=protein_coding;locus_tag=AD39_RS16410;old_locus_tag=AD39_1496 NZ_JJLH01000019.1 Protein Homology CDS 76715 78256 . + 0 ID=cds-WP_001300658.1;Parent=gene-AD39_RS16410;Dbxref=GenBank:WP_001300658.1;Name=WP_001300658.1;Ontology_term=GO:0006355,GO:0008134;gbkey=CDS;gene=tyrR;go_function=transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415839.1;locus_tag=AD39_RS16410;product=transcriptional regulator TyrR;protein_id=WP_001300658.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 78300 78806 . - . ID=gene-AD39_RS16405;Name=tpx;gbkey=Gene;gene=tpx;gene_biotype=protein_coding;locus_tag=AD39_RS16405;old_locus_tag=AD39_1497 NZ_JJLH01000019.1 Protein Homology CDS 78300 78806 . - 0 ID=cds-WP_000084387.1;Parent=gene-AD39_RS16405;Dbxref=GenBank:WP_000084387.1;Name=WP_000084387.1;Ontology_term=GO:0008379,GO:0016684;gbkey=CDS;gene=tpx;go_function=thioredoxin peroxidase activity|0008379||IEA,oxidoreductase activity%2C acting on peroxide as acceptor|0016684||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309930.1;locus_tag=AD39_RS16405;product=thiol peroxidase;protein_id=WP_000084387.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 78925 79890 . + . ID=gene-AD39_RS16400;Name=ycjG;gbkey=Gene;gene=ycjG;gene_biotype=protein_coding;locus_tag=AD39_RS16400;old_locus_tag=AD39_1498 NZ_JJLH01000019.1 Protein Homology CDS 78925 79890 . + 0 ID=cds-WP_001348098.1;Parent=gene-AD39_RS16400;Dbxref=GenBank:WP_001348098.1;Name=WP_001348098.1;Ontology_term=GO:0009063,GO:0016855;gbkey=CDS;gene=ycjG;go_function=racemase and epimerase activity%2C acting on amino acids and derivatives|0016855||IEA;go_process=amino acid catabolic process|0009063||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707230.2;locus_tag=AD39_RS16400;product=L-Ala-D/L-Glu epimerase;protein_id=WP_001348098.1;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 79865 80593 . - . ID=gene-AD39_RS16395;Name=mpaA;gbkey=Gene;gene=mpaA;gene_biotype=protein_coding;locus_tag=AD39_RS16395;old_locus_tag=AD39_1499 NZ_JJLH01000019.1 Protein Homology CDS 79865 80593 . - 0 ID=cds-WP_000217817.1;Parent=gene-AD39_RS16395;Dbxref=GenBank:WP_000217817.1;Name=WP_000217817.1;Ontology_term=GO:0006508,GO:0004181,GO:0008270;gbkey=CDS;gene=mpaA;go_function=metallocarboxypeptidase activity|0004181||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415842.2;locus_tag=AD39_RS16395;product=murein tripeptide amidase MpaA;protein_id=WP_000217817.1;transl_table=11 NZ_JJLH01000019.1 RefSeq pseudogene 80720 80857 . - . ID=gene-AD39_RS16390;Name=AD39_RS16390;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS16390;old_locus_tag=AD39_1500;partial=true;pseudo=true;start_range=.,80720 NZ_JJLH01000019.1 Protein Homology CDS 80720 80857 . - 0 ID=cds-AD39_RS16390;Parent=gene-AD39_RS16390;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707232.2;locus_tag=AD39_RS16390;partial=true;product=NAD-dependent dehydratase;pseudo=true;start_range=.,80720;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 80928 81848 . - . ID=gene-AD39_RS16385;Name=ycjY;gbkey=Gene;gene=ycjY;gene_biotype=protein_coding;locus_tag=AD39_RS16385;old_locus_tag=AD39_1501 NZ_JJLH01000019.1 Protein Homology CDS 80928 81848 . - 0 ID=cds-WP_001345592.1;Parent=gene-AD39_RS16385;Dbxref=GenBank:WP_001345592.1;Name=WP_001345592.1;Ontology_term=GO:0016787;gbkey=CDS;gene=ycjY;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415843.2;locus_tag=AD39_RS16385;product=alpha/beta hydrolase;protein_id=WP_001345592.1;transl_table=11 NZ_JJLH01000019.1 RefSeq pseudogene 81986 82423 . + . ID=gene-AD39_RS16380;Name=pgrR;end_range=82423,.;gbkey=Gene;gene=pgrR;gene_biotype=pseudogene;locus_tag=AD39_RS16380;old_locus_tag=AD39_1502;partial=true;pseudo=true NZ_JJLH01000019.1 Protein Homology CDS 81986 82423 . + 0 ID=cds-AD39_RS16380;Parent=gene-AD39_RS16380;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=82423,.;gbkey=CDS;gene=pgrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309937.1;locus_tag=AD39_RS16380;partial=true;product=DNA-binding transcriptional regulator PgrR;pseudo=true;transl_table=11 NZ_JJLH01000019.1 RefSeq gene 82477 83174 . + . ID=gene-AD39_RS16375;Name=AD39_RS16375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16375;old_locus_tag=AD39_1503 NZ_JJLH01000019.1 Protein Homology CDS 82477 82726 . + 0 ID=cds-WP_223155668.1;Parent=gene-AD39_RS16375;Dbxref=GenBank:WP_223155668.1;Name=WP_223155668.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1;locus_tag=AD39_RS16375;product=IS1-like element IS1A family transposase;protein_id=WP_223155668.1;transl_table=11 NZ_JJLH01000019.1 Protein Homology CDS 82726 83174 . + 2 ID=cds-WP_223155668.1;Parent=gene-AD39_RS16375;Dbxref=GenBank:WP_223155668.1;Name=WP_223155668.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1;locus_tag=AD39_RS16375;product=IS1-like element IS1A family transposase;protein_id=WP_223155668.1;transl_table=11 ##sequence-region NZ_JJLH01000020.1 1 79278 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000020.1 RefSeq region 1 79278 . + . ID=NZ_JJLH01000020.1:1..79278;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000020.1 RefSeq gene 21 718 . + . ID=gene-AD39_RS16370;Name=AD39_RS16370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16370;old_locus_tag=AD39_1504 NZ_JJLH01000020.1 Protein Homology CDS 21 270 . + 0 ID=cds-WP_223155668.1-2;Parent=gene-AD39_RS16370;Dbxref=GenBank:WP_223155668.1;Name=WP_223155668.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1;locus_tag=AD39_RS16370;product=IS1-like element IS1A family transposase;protein_id=WP_223155668.1;transl_table=11 NZ_JJLH01000020.1 Protein Homology CDS 270 718 . + 2 ID=cds-WP_223155668.1-2;Parent=gene-AD39_RS16370;Dbxref=GenBank:WP_223155668.1;Name=WP_223155668.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1;locus_tag=AD39_RS16370;product=IS1-like element IS1A family transposase;protein_id=WP_223155668.1;transl_table=11 NZ_JJLH01000020.1 RefSeq pseudogene 736 1206 . + . ID=gene-AD39_RS0123975;Name=pgrR;gbkey=Gene;gene=pgrR;gene_biotype=pseudogene;locus_tag=AD39_RS0123975;partial=true;pseudo=true;start_range=.,736 NZ_JJLH01000020.1 Protein Homology CDS 736 1206 . + 0 ID=cds-AD39_RS0123975;Parent=gene-AD39_RS0123975;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;gene=pgrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309937.1;locus_tag=AD39_RS0123975;partial=true;product=DNA-binding transcriptional regulator PgrR;pseudo=true;start_range=.,736;transl_table=11 NZ_JJLH01000020.1 RefSeq pseudogene 1304 1396 . + . ID=gene-AD39_RS30145;Name=AD39_RS30145;end_range=1396,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30145;old_locus_tag=AD39_1506;partial=true;pseudo=true;start_range=.,1304 NZ_JJLH01000020.1 Protein Homology CDS 1304 1396 . + 0 ID=cds-AD39_RS30145;Parent=gene-AD39_RS30145;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=1396,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004170112.1;locus_tag=AD39_RS30145;partial=true;product=epoxyqueuosine reductase QueH;pseudo=true;start_range=.,1304;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 1543 3156 . + . ID=gene-AD39_RS16360;Name=mppA;gbkey=Gene;gene=mppA;gene_biotype=protein_coding;locus_tag=AD39_RS16360;old_locus_tag=AD39_1507 NZ_JJLH01000020.1 Protein Homology CDS 1543 3156 . + 0 ID=cds-WP_000683020.1;Parent=gene-AD39_RS16360;Dbxref=GenBank:WP_000683020.1;Name=WP_000683020.1;gbkey=CDS;gene=mppA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415845.2;locus_tag=AD39_RS16360;product=murein tripeptide ABC transporter substrate-binding protein MppA;protein_id=WP_000683020.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 3207 4238 . - . ID=gene-AD39_RS16355;Name=ynaI;gbkey=Gene;gene=ynaI;gene_biotype=protein_coding;locus_tag=AD39_RS16355;old_locus_tag=AD39_1508 NZ_JJLH01000020.1 Protein Homology CDS 3207 4238 . - 0 ID=cds-WP_000559900.1;Parent=gene-AD39_RS16355;Dbxref=GenBank:WP_000559900.1;Name=WP_000559900.1;gbkey=CDS;gene=ynaI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309939.1;locus_tag=AD39_RS16355;product=low conductance mechanosensitive channel YnaI;protein_id=WP_000559900.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 4482 4739 . + . ID=gene-AD39_RS16350;Name=ynaJ;gbkey=Gene;gene=ynaJ;gene_biotype=protein_coding;locus_tag=AD39_RS16350;old_locus_tag=AD39_1509 NZ_JJLH01000020.1 Protein Homology CDS 4482 4739 . + 0 ID=cds-WP_000605090.1;Parent=gene-AD39_RS16350;Dbxref=GenBank:WP_000605090.1;Name=WP_000605090.1;gbkey=CDS;gene=ynaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309940.1;locus_tag=AD39_RS16350;product=DUF2534 family protein;protein_id=WP_000605090.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 4789 5739 . - . ID=gene-AD39_RS16345;Name=uspE;gbkey=Gene;gene=uspE;gene_biotype=protein_coding;locus_tag=AD39_RS16345;old_locus_tag=AD39_1510 NZ_JJLH01000020.1 Protein Homology CDS 4789 5739 . - 0 ID=cds-WP_001262123.1;Parent=gene-AD39_RS16345;Dbxref=GenBank:WP_001262123.1;Name=WP_001262123.1;gbkey=CDS;gene=uspE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309941.1;locus_tag=AD39_RS16345;product=universal stress protein UspE;protein_id=WP_001262123.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 5891 6643 . - . ID=gene-AD39_RS16340;Name=fnr;gbkey=Gene;gene=fnr;gene_biotype=protein_coding;locus_tag=AD39_RS16340;old_locus_tag=AD39_1511 NZ_JJLH01000020.1 Protein Homology CDS 5891 6643 . - 0 ID=cds-WP_000611911.1;Parent=gene-AD39_RS16340;Dbxref=GenBank:WP_000611911.1;Name=WP_000611911.1;gbkey=CDS;gene=fnr;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007849744.1;locus_tag=AD39_RS16340;product=fumarate/nitrate reduction transcriptional regulator Fnr;protein_id=WP_000611911.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 6838 7353 . - . ID=gene-AD39_RS16335;Name=ogt;gbkey=Gene;gene=ogt;gene_biotype=protein_coding;locus_tag=AD39_RS16335;old_locus_tag=AD39_1512 NZ_JJLH01000020.1 Protein Homology CDS 6838 7353 . - 0 ID=cds-WP_000945013.1;Parent=gene-AD39_RS16335;Dbxref=GenBank:WP_000945013.1;Name=WP_000945013.1;Ontology_term=GO:0006281,GO:0003908;gbkey=CDS;gene=ogt;go_function=methylated-DNA-[protein]-cysteine S-methyltransferase activity|0003908||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415851.1;locus_tag=AD39_RS16335;product=methylated-DNA--[protein]-cysteine S-methyltransferase;protein_id=WP_000945013.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 7364 8890 . - . ID=gene-AD39_RS16330;Name=abgT;gbkey=Gene;gene=abgT;gene_biotype=protein_coding;locus_tag=AD39_RS16330;old_locus_tag=AD39_1513 NZ_JJLH01000020.1 Protein Homology CDS 7364 8890 . - 0 ID=cds-WP_000062967.1;Parent=gene-AD39_RS16330;Dbxref=GenBank:WP_000062967.1;Name=WP_000062967.1;gbkey=CDS;gene=abgT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415852.2;locus_tag=AD39_RS16330;product=p-aminobenzoyl-glutamate transporter;protein_id=WP_000062967.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 8927 10372 . - . ID=gene-AD39_RS16325;Name=abgB;gbkey=Gene;gene=abgB;gene_biotype=protein_coding;locus_tag=AD39_RS16325;old_locus_tag=AD39_1514 NZ_JJLH01000020.1 Protein Homology CDS 8927 10372 . - 0 ID=cds-WP_032287532.1;Parent=gene-AD39_RS16325;Dbxref=GenBank:WP_032287532.1;Name=WP_032287532.1;gbkey=CDS;gene=abgB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415853.1;locus_tag=AD39_RS16325;product=p-aminobenzoyl-glutamate hydrolase subunit AbgB;protein_id=WP_032287532.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 10372 11682 . - . ID=gene-AD39_RS16320;Name=abgA;gbkey=Gene;gene=abgA;gene_biotype=protein_coding;locus_tag=AD39_RS16320;old_locus_tag=AD39_1515 NZ_JJLH01000020.1 Protein Homology CDS 10372 11682 . - 0 ID=cds-WP_000444949.1;Parent=gene-AD39_RS16320;Dbxref=GenBank:WP_000444949.1;Name=WP_000444949.1;gbkey=CDS;gene=abgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415854.4;locus_tag=AD39_RS16320;product=p-aminobenzoyl-glutamate hydrolase subunit AbgA;protein_id=WP_000444949.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 11858 12766 . + . ID=gene-AD39_RS16315;Name=abgR;gbkey=Gene;gene=abgR;gene_biotype=protein_coding;locus_tag=AD39_RS16315;old_locus_tag=AD39_1516 NZ_JJLH01000020.1 Protein Homology CDS 11858 12766 . + 0 ID=cds-WP_000885467.1;Parent=gene-AD39_RS16315;Dbxref=GenBank:WP_000885467.1;Name=WP_000885467.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=abgR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309950.1;locus_tag=AD39_RS16315;product=LysR family transcriptional regulator;protein_id=WP_000885467.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 13096 13659 . + . ID=gene-AD39_RS16310;Name=smrA;gbkey=Gene;gene=smrA;gene_biotype=protein_coding;locus_tag=AD39_RS16310;old_locus_tag=AD39_1517 NZ_JJLH01000020.1 Protein Homology CDS 13096 13659 . + 0 ID=cds-WP_001046821.1;Parent=gene-AD39_RS16310;Dbxref=GenBank:WP_001046821.1;Name=WP_001046821.1;gbkey=CDS;gene=smrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309951.1;locus_tag=AD39_RS16310;product=DNA endonuclease SmrA;protein_id=WP_001046821.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 13680 14912 . - . ID=gene-AD39_RS16305;Name=dgcM;gbkey=Gene;gene=dgcM;gene_biotype=protein_coding;locus_tag=AD39_RS16305;old_locus_tag=AD39_1518 NZ_JJLH01000020.1 Protein Homology CDS 13680 14912 . - 0 ID=cds-WP_000628065.1;Parent=gene-AD39_RS16305;Dbxref=GenBank:WP_000628065.1;Name=WP_000628065.1;gbkey=CDS;gene=dgcM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309952.2;locus_tag=AD39_RS16305;product=diguanylate cyclase DgcM;protein_id=WP_000628065.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 15106 15153 . + . ID=gene-AD39_RS29675;Name=ydaN;gbkey=Gene;gene=ydaN;gene_biotype=protein_coding;locus_tag=AD39_RS29675 NZ_JJLH01000020.1 Protein Homology CDS 15106 15153 . + 0 ID=cds-WP_211180494.1;Parent=gene-AD39_RS29675;Dbxref=GenBank:WP_211180494.1;Name=WP_211180494.1;gbkey=CDS;gene=ydaN;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051183.1;locus_tag=AD39_RS29675;product=protein YnaN;protein_id=WP_211180494.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 15167 16150 . + . ID=gene-AD39_RS16300;Name=zntB;gbkey=Gene;gene=zntB;gene_biotype=protein_coding;locus_tag=AD39_RS16300;old_locus_tag=AD39_1519 NZ_JJLH01000020.1 Protein Homology CDS 15167 16150 . + 0 ID=cds-WP_000387388.1;Parent=gene-AD39_RS16300;Dbxref=GenBank:WP_000387388.1;Name=WP_000387388.1;Ontology_term=GO:0071577,GO:0005385,GO:0005886;gbkey=CDS;gene=zntB;go_component=plasma membrane|0005886||IEA;go_function=zinc ion transmembrane transporter activity|0005385||IEA;go_process=zinc ion transmembrane transport|0071577||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309953.1;locus_tag=AD39_RS16300;product=zinc transporter ZntB;protein_id=WP_000387388.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 16425 16598 . + . ID=gene-AD39_RS29950;Name=ynaL;gbkey=Gene;gene=ynaL;gene_biotype=protein_coding;locus_tag=AD39_RS29950 NZ_JJLH01000020.1 Protein Homology CDS 16425 16598 . + 0 ID=cds-WP_001296046.1;Parent=gene-AD39_RS29950;Dbxref=GenBank:WP_001296046.1;Name=WP_001296046.1;gbkey=CDS;gene=ynaL;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518775.1;locus_tag=AD39_RS29950;product=protein YnaL;protein_id=WP_001296046.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 16628 18001 . + . ID=gene-AD39_RS16295;Name=dbpA;gbkey=Gene;gene=dbpA;gene_biotype=protein_coding;locus_tag=AD39_RS16295;old_locus_tag=AD39_1521 NZ_JJLH01000020.1 Protein Homology CDS 16628 18001 . + 0 ID=cds-WP_000123738.1;Parent=gene-AD39_RS16295;Dbxref=GenBank:WP_000123738.1;Name=WP_000123738.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=dbpA;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309954.1;locus_tag=AD39_RS16295;product=ATP-dependent RNA helicase DbpA;protein_id=WP_000123738.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 18130 19065 . - . ID=gene-AD39_RS16290;Name=ttcA;gbkey=Gene;gene=ttcA;gene_biotype=protein_coding;locus_tag=AD39_RS16290;old_locus_tag=AD39_1522 NZ_JJLH01000020.1 Protein Homology CDS 18130 19065 . - 0 ID=cds-WP_000081418.1;Parent=gene-AD39_RS16290;Dbxref=GenBank:WP_000081418.1;Name=WP_000081418.1;Ontology_term=GO:0008033;gbkey=CDS;gene=ttcA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707683.1;locus_tag=AD39_RS16290;product=tRNA 2-thiocytidine(32) synthetase TtcA;protein_id=WP_000081418.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 19241 19675 . - . ID=gene-AD39_RS16285;Name=uspF;gbkey=Gene;gene=uspF;gene_biotype=protein_coding;locus_tag=AD39_RS16285;old_locus_tag=AD39_1523 NZ_JJLH01000020.1 Protein Homology CDS 19241 19675 . - 0 ID=cds-WP_001082294.1;Parent=gene-AD39_RS16285;Dbxref=GenBank:WP_001082294.1;Name=WP_001082294.1;gbkey=CDS;gene=uspF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310024.2;locus_tag=AD39_RS16285;product=universal stress protein UspF;protein_id=WP_001082294.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 19816 20949 . - . ID=gene-AD39_RS16280;Name=ompN;gbkey=Gene;gene=ompN;gene_biotype=protein_coding;locus_tag=AD39_RS16280;old_locus_tag=AD39_1524 NZ_JJLH01000020.1 Protein Homology CDS 19816 20949 . - 0 ID=cds-WP_000837924.1;Parent=gene-AD39_RS16280;Dbxref=GenBank:WP_000837924.1;Name=WP_000837924.1;gbkey=CDS;gene=ompN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415895.1;locus_tag=AD39_RS16280;product=porin OmpN;protein_id=WP_000837924.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 21317 24841 . - . ID=gene-AD39_RS16275;Name=nifJ;gbkey=Gene;gene=nifJ;gene_biotype=protein_coding;locus_tag=AD39_RS16275;old_locus_tag=AD39_1525 NZ_JJLH01000020.1 Protein Homology CDS 21317 24841 . - 0 ID=cds-WP_001597803.1;Parent=gene-AD39_RS16275;Dbxref=GenBank:WP_001597803.1;Name=WP_001597803.1;Ontology_term=GO:0022900,GO:0005506,GO:0016903,GO:0030976;gbkey=CDS;gene=nifJ;go_function=iron ion binding|0005506||IEA,oxidoreductase activity%2C acting on the aldehyde or oxo group of donors|0016903||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310027.1;locus_tag=AD39_RS16275;product=pyruvate:ferredoxin (flavodoxin) oxidoreductase;protein_id=WP_001597803.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 25115 25381 . + . ID=gene-AD39_RS16270;Name=ydbJ;gbkey=Gene;gene=ydbJ;gene_biotype=protein_coding;locus_tag=AD39_RS16270;old_locus_tag=AD39_1526 NZ_JJLH01000020.1 Protein Homology CDS 25115 25381 . + 0 ID=cds-WP_001295715.1;Parent=gene-AD39_RS16270;Dbxref=GenBank:WP_001295715.1;Name=WP_001295715.1;gbkey=CDS;gene=ydbJ;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588453.1;locus_tag=AD39_RS16270;product=putative hemolysin;protein_id=WP_001295715.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 25378 25800 . - . ID=gene-AD39_RS16265;Name=hslJ;gbkey=Gene;gene=hslJ;gene_biotype=protein_coding;locus_tag=AD39_RS16265;old_locus_tag=AD39_1527 NZ_JJLH01000020.1 Protein Homology CDS 25378 25800 . - 0 ID=cds-WP_001597804.1;Parent=gene-AD39_RS16265;Dbxref=GenBank:WP_001597804.1;Name=WP_001597804.1;gbkey=CDS;gene=hslJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415897.1;locus_tag=AD39_RS16265;product=heat shock protein HslJ;protein_id=WP_001597804.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 25911 26900 . - . ID=gene-AD39_RS16260;Name=ldhA;gbkey=Gene;gene=ldhA;gene_biotype=protein_coding;locus_tag=AD39_RS16260;old_locus_tag=AD39_1528 NZ_JJLH01000020.1 Protein Homology CDS 25911 26900 . - 0 ID=cds-WP_000762229.1;Parent=gene-AD39_RS16260;Dbxref=GenBank:WP_000762229.1;Name=WP_000762229.1;gbkey=CDS;gene=ldhA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310029.1;locus_tag=AD39_RS16260;product=D-lactate dehydrogenase;protein_id=WP_000762229.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 27108 29747 . + . ID=gene-AD39_RS16255;Name=ydbH;gbkey=Gene;gene=ydbH;gene_biotype=protein_coding;locus_tag=AD39_RS16255;old_locus_tag=AD39_1529 NZ_JJLH01000020.1 Protein Homology CDS 27108 29747 . + 0 ID=cds-WP_000900972.1;Parent=gene-AD39_RS16255;Dbxref=GenBank:WP_000900972.1;Name=WP_000900972.1;gbkey=CDS;gene=ydbH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415899.1;locus_tag=AD39_RS16255;product=YdbH family protein;protein_id=WP_000900972.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 29744 29929 . + . ID=gene-AD39_RS16250;Name=ynbE;gbkey=Gene;gene=ynbE;gene_biotype=protein_coding;locus_tag=AD39_RS16250;old_locus_tag=AD39_1530 NZ_JJLH01000020.1 Protein Homology CDS 29744 29929 . + 0 ID=cds-WP_000698145.1;Parent=gene-AD39_RS16250;Dbxref=GenBank:WP_000698145.1;Name=WP_000698145.1;gbkey=CDS;gene=ynbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415900.1;locus_tag=AD39_RS16250;product=YnbE family lipoprotein;protein_id=WP_000698145.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 29934 30263 . + . ID=gene-AD39_RS16245;Name=ydbL;gbkey=Gene;gene=ydbL;gene_biotype=protein_coding;locus_tag=AD39_RS16245;old_locus_tag=AD39_1531 NZ_JJLH01000020.1 Protein Homology CDS 29934 30263 . + 0 ID=cds-WP_001325798.1;Parent=gene-AD39_RS16245;Dbxref=GenBank:WP_001325798.1;Name=WP_001325798.1;gbkey=CDS;gene=ydbL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707676.2;locus_tag=AD39_RS16245;product=YdbL family protein;protein_id=WP_001325798.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 30435 31340 . - . ID=gene-AD39_RS16240;Name=feaR;gbkey=Gene;gene=feaR;gene_biotype=protein_coding;locus_tag=AD39_RS16240;old_locus_tag=AD39_1532 NZ_JJLH01000020.1 Protein Homology CDS 30435 31340 . - 0 ID=cds-WP_001542872.1;Parent=gene-AD39_RS16240;Dbxref=GenBank:WP_001542872.1;Name=WP_001542872.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=feaR;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415902.1;locus_tag=AD39_RS16240;product=transcriptional regulator FeaR;protein_id=WP_001542872.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 31576 33075 . + . ID=gene-AD39_RS16235;Name=feaB;gbkey=Gene;gene=feaB;gene_biotype=protein_coding;gene_synonym=maoB,padA;locus_tag=AD39_RS16235;old_locus_tag=AD39_1533 NZ_JJLH01000020.1 Protein Homology CDS 31576 33075 . + 0 ID=cds-WP_000138615.1;Parent=gene-AD39_RS16235;Dbxref=GenBank:WP_000138615.1;Name=WP_000138615.1;gbkey=CDS;gene=feaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415903.4;locus_tag=AD39_RS16235;product=phenylacetaldehyde dehydrogenase;protein_id=WP_000138615.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 33133 35406 . - . ID=gene-AD39_RS16230;Name=tynA;gbkey=Gene;gene=tynA;gene_biotype=protein_coding;locus_tag=AD39_RS16230;old_locus_tag=AD39_1534 NZ_JJLH01000020.1 Protein Homology CDS 33133 35406 . - 0 ID=cds-WP_000535451.1;Parent=gene-AD39_RS16230;Dbxref=GenBank:WP_000535451.1;Name=WP_000535451.1;Ontology_term=GO:0009308,GO:0005507,GO:0008131,GO:0048038;gbkey=CDS;gene=tynA;go_function=copper ion binding|0005507||IEA,primary methylamine oxidase activity|0008131||IEA,quinone binding|0048038||IEA;go_process=amine metabolic process|0009308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415904.3;locus_tag=AD39_RS16230;product=primary-amine oxidase;protein_id=WP_000535451.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 35654 37699 . - . ID=gene-AD39_RS16225;Name=paaZ;gbkey=Gene;gene=paaZ;gene_biotype=protein_coding;locus_tag=AD39_RS16225;old_locus_tag=AD39_1536 NZ_JJLH01000020.1 Protein Homology CDS 35654 37699 . - 0 ID=cds-WP_001186481.1;Parent=gene-AD39_RS16225;Dbxref=GenBank:WP_001186481.1;Name=WP_001186481.1;gbkey=CDS;gene=paaZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415905.1;locus_tag=AD39_RS16225;product=phenylacetic acid degradation bifunctional protein PaaZ;protein_id=WP_001186481.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 37984 38913 . + . ID=gene-AD39_RS16220;Name=paaA;gbkey=Gene;gene=paaA;gene_biotype=protein_coding;locus_tag=AD39_RS16220;old_locus_tag=AD39_1537 NZ_JJLH01000020.1 Protein Homology CDS 37984 38913 . + 0 ID=cds-WP_000191073.1;Parent=gene-AD39_RS16220;Dbxref=GenBank:WP_000191073.1;Name=WP_000191073.1;Ontology_term=GO:0010124,GO:0097266;gbkey=CDS;gene=paaA;go_function=phenylacetyl-CoA 1%2C2-epoxidase activity|0097266||IEA;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415906.1;locus_tag=AD39_RS16220;product=1%2C2-phenylacetyl-CoA epoxidase subunit PaaA;protein_id=WP_000191073.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 38925 39212 . + . ID=gene-AD39_RS16215;Name=paaB;gbkey=Gene;gene=paaB;gene_biotype=protein_coding;locus_tag=AD39_RS16215;old_locus_tag=AD39_1538 NZ_JJLH01000020.1 Protein Homology CDS 38925 39212 . + 0 ID=cds-WP_000073393.1;Parent=gene-AD39_RS16215;Dbxref=GenBank:WP_000073393.1;Name=WP_000073393.1;Ontology_term=GO:0010124;gbkey=CDS;gene=paaB;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415907.1;locus_tag=AD39_RS16215;product=1%2C2-phenylacetyl-CoA epoxidase subunit PaaB;protein_id=WP_000073393.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 39221 39967 . + . ID=gene-AD39_RS16210;Name=paaC;gbkey=Gene;gene=paaC;gene_biotype=protein_coding;locus_tag=AD39_RS16210;old_locus_tag=AD39_1539 NZ_JJLH01000020.1 Protein Homology CDS 39221 39967 . + 0 ID=cds-WP_001072831.1;Parent=gene-AD39_RS16210;Dbxref=GenBank:WP_001072831.1;Name=WP_001072831.1;Ontology_term=GO:0010124;gbkey=CDS;gene=paaC;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415908.1;locus_tag=AD39_RS16210;product=1%2C2-phenylacetyl-CoA epoxidase subunit PaaC;protein_id=WP_001072831.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 39982 40479 . + . ID=gene-AD39_RS16205;Name=paaD;gbkey=Gene;gene=paaD;gene_biotype=protein_coding;locus_tag=AD39_RS16205;old_locus_tag=AD39_1540 NZ_JJLH01000020.1 Protein Homology CDS 39982 40479 . + 0 ID=cds-WP_001189197.1;Parent=gene-AD39_RS16205;Dbxref=GenBank:WP_001189197.1;Name=WP_001189197.1;Ontology_term=GO:0010124;gbkey=CDS;gene=paaD;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415909.4;locus_tag=AD39_RS16205;product=1%2C2-phenylacetyl-CoA epoxidase subunit PaaD;protein_id=WP_001189197.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 40487 41557 . + . ID=gene-AD39_RS16200;Name=paaE;gbkey=Gene;gene=paaE;gene_biotype=protein_coding;locus_tag=AD39_RS16200;old_locus_tag=AD39_1541 NZ_JJLH01000020.1 Protein Homology CDS 40487 41557 . + 0 ID=cds-WP_000206374.1;Parent=gene-AD39_RS16200;Dbxref=GenBank:WP_000206374.1;Name=WP_000206374.1;Ontology_term=GO:0010124;gbkey=CDS;gene=paaE;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415910.1;locus_tag=AD39_RS16200;product=1%2C2-phenylacetyl-CoA epoxidase subunit PaaE;protein_id=WP_000206374.1;transl_table=11 NZ_JJLH01000020.1 RefSeq pseudogene 41554 42320 . + . ID=gene-AD39_RS0123990;Name=paaF;gbkey=Gene;gene=paaF;gene_biotype=pseudogene;locus_tag=AD39_RS0123990;pseudo=true NZ_JJLH01000020.1 Protein Homology CDS 41554 42320 . + 0 ID=cds-AD39_RS0123990;Parent=gene-AD39_RS0123990;Note=frameshifted;gbkey=CDS;gene=paaF;inference=COORDINATES: protein motif:HMM:NF012596.6;locus_tag=AD39_RS0123990;product=2%2C3-dehydroadipyl-CoA hydratase PaaF;pseudo=true;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 42320 43108 . + . ID=gene-AD39_RS16195;Name=paaG;gbkey=Gene;gene=paaG;gene_biotype=protein_coding;locus_tag=AD39_RS16195;old_locus_tag=AD39_1544 NZ_JJLH01000020.1 Protein Homology CDS 42320 43108 . + 0 ID=cds-WP_000969790.1;Parent=gene-AD39_RS16195;Dbxref=GenBank:WP_000969790.1;Name=WP_000969790.1;Ontology_term=GO:0010124,GO:0016853;gbkey=CDS;gene=paaG;go_function=isomerase activity|0016853||IEA;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415912.1;locus_tag=AD39_RS16195;product=2-(1%2C2-epoxy-1%2C2-dihydrophenyl)acetyl-CoA isomerase PaaG;protein_id=WP_000969790.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 43110 44537 . + . ID=gene-AD39_RS16190;Name=paaH;gbkey=Gene;gene=paaH;gene_biotype=protein_coding;locus_tag=AD39_RS16190;old_locus_tag=AD39_1545 NZ_JJLH01000020.1 Protein Homology CDS 43110 44537 . + 0 ID=cds-WP_001724643.1;Parent=gene-AD39_RS16190;Dbxref=GenBank:WP_001724643.1;Name=WP_001724643.1;Ontology_term=GO:0010124,GO:0008691;gbkey=CDS;gene=paaH;go_function=3-hydroxybutyryl-CoA dehydrogenase activity|0008691||IEA;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415913.1;locus_tag=AD39_RS16190;product=3-hydroxyacyl-CoA dehydrogenase PaaH;protein_id=WP_001724643.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 44527 44949 . + . ID=gene-AD39_RS16185;Name=paaI;gbkey=Gene;gene=paaI;gene_biotype=protein_coding;locus_tag=AD39_RS16185;old_locus_tag=AD39_1546 NZ_JJLH01000020.1 Protein Homology CDS 44527 44949 . + 0 ID=cds-WP_000018413.1;Parent=gene-AD39_RS16185;Dbxref=GenBank:WP_000018413.1;Name=WP_000018413.1;Ontology_term=GO:0010124,GO:0016790;gbkey=CDS;gene=paaI;go_function=thiolester hydrolase activity|0016790||IEA;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415914.1;locus_tag=AD39_RS16185;product=hydroxyphenylacetyl-CoA thioesterase PaaI;protein_id=WP_000018413.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 44949 46154 . + . ID=gene-AD39_RS16180;Name=paaJ;gbkey=Gene;gene=paaJ;gene_biotype=protein_coding;gene_synonym=paaE,ydbW;locus_tag=AD39_RS16180;old_locus_tag=AD39_1547 NZ_JJLH01000020.1 Protein Homology CDS 44949 46154 . + 0 ID=cds-WP_032283185.1;Parent=gene-AD39_RS16180;Dbxref=GenBank:WP_032283185.1;Name=WP_032283185.1;gbkey=CDS;gene=paaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415915.1;locus_tag=AD39_RS16180;product=bifunctional 3-oxoadipyl-CoA/3-oxo-5%2C6-dehydrosuberyl-CoA thiolase;protein_id=WP_032283185.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 46181 47494 . + . ID=gene-AD39_RS16175;Name=paaK;gbkey=Gene;gene=paaK;gene_biotype=protein_coding;locus_tag=AD39_RS16175;old_locus_tag=AD39_1548 NZ_JJLH01000020.1 Protein Homology CDS 46181 47494 . + 0 ID=cds-WP_001713314.1;Parent=gene-AD39_RS16175;Dbxref=GenBank:WP_001713314.1;Name=WP_001713314.1;Ontology_term=GO:0010124,GO:0047475;gbkey=CDS;gene=paaK;go_function=phenylacetate-CoA ligase activity|0047475||IEA;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415916.1;locus_tag=AD39_RS16175;product=phenylacetate--CoA ligase PaaK;protein_id=WP_001713314.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 47595 48545 . + . ID=gene-AD39_RS16170;Name=paaX;gbkey=Gene;gene=paaX;gene_biotype=protein_coding;locus_tag=AD39_RS16170;old_locus_tag=AD39_1549 NZ_JJLH01000020.1 Protein Homology CDS 47595 48545 . + 0 ID=cds-WP_000039887.1;Parent=gene-AD39_RS16170;Dbxref=GenBank:WP_000039887.1;Name=WP_000039887.1;Ontology_term=GO:0006351;gbkey=CDS;gene=paaX;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415917.1;locus_tag=AD39_RS16170;product=phenylacetic acid degradation operon negative regulatory protein PaaX;protein_id=WP_000039887.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 48527 49117 . + . ID=gene-AD39_RS16165;Name=paaY;gbkey=Gene;gene=paaY;gene_biotype=protein_coding;locus_tag=AD39_RS16165;old_locus_tag=AD39_1550 NZ_JJLH01000020.1 Protein Homology CDS 48527 49117 . + 0 ID=cds-WP_001123453.1;Parent=gene-AD39_RS16165;Dbxref=GenBank:WP_001123453.1;Name=WP_001123453.1;Ontology_term=GO:0010124;gbkey=CDS;gene=paaY;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415918.1;locus_tag=AD39_RS16165;product=phenylacetic acid degradation protein PaaY;protein_id=WP_001123453.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 49347 50207 . + . ID=gene-AD39_RS16160;Name=pdxI;gbkey=Gene;gene=pdxI;gene_biotype=protein_coding;locus_tag=AD39_RS16160;old_locus_tag=AD39_1551 NZ_JJLH01000020.1 Protein Homology CDS 49347 50207 . + 0 ID=cds-WP_000097794.1;Parent=gene-AD39_RS16160;Dbxref=GenBank:WP_000097794.1;Name=WP_000097794.1;gbkey=CDS;gene=pdxI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415924.1;locus_tag=AD39_RS16160;product=pyridoxine 4-dehydrogenase;protein_id=WP_000097794.1;transl_table=11 NZ_JJLH01000020.1 RefSeq pseudogene 50271 52576 . + . ID=gene-AD39_RS0123995;Name=ydbD;gbkey=Gene;gene=ydbD;gene_biotype=pseudogene;locus_tag=AD39_RS0123995;old_locus_tag=AD39_1552;pseudo=true NZ_JJLH01000020.1 Protein Homology CDS 50271 52576 . + 0 ID=cds-AD39_RS0123995;Parent=gene-AD39_RS0123995;Note=frameshifted;gbkey=CDS;gene=ydbD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415925.2;locus_tag=AD39_RS0123995;product=DUF2773 domain-containing bactofilin;pseudo=true;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 52747 53352 . + . ID=gene-AD39_RS16155;Name=ynbA;gbkey=Gene;gene=ynbA;gene_biotype=protein_coding;locus_tag=AD39_RS16155;old_locus_tag=AD39_1554 NZ_JJLH01000020.1 Protein Homology CDS 52747 53352 . + 0 ID=cds-WP_000177537.1;Parent=gene-AD39_RS16155;Dbxref=GenBank:WP_000177537.1;Name=WP_000177537.1;Ontology_term=GO:0008654,GO:0000287,GO:0016780,GO:0016020;gbkey=CDS;gene=ynbA;go_component=membrane|0016020||IEA;go_function=magnesium ion binding|0000287||IEA,phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310037.2;locus_tag=AD39_RS16155;product=CDP-alcohol phosphatidyltransferase family protein;protein_id=WP_000177537.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 53352 54248 . + . ID=gene-AD39_RS16150;Name=ynbB;gbkey=Gene;gene=ynbB;gene_biotype=protein_coding;locus_tag=AD39_RS16150;old_locus_tag=AD39_1555 NZ_JJLH01000020.1 Protein Homology CDS 53352 54248 . + 0 ID=cds-WP_032283186.1;Parent=gene-AD39_RS16150;Dbxref=GenBank:WP_032283186.1;Name=WP_032283186.1;Ontology_term=GO:0016024,GO:0004605;gbkey=CDS;gene=ynbB;go_function=phosphatidate cytidylyltransferase activity|0004605||IEA;go_process=CDP-diacylglycerol biosynthetic process|0016024||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415927.1;locus_tag=AD39_RS16150;product=phosphatidate cytidylyltransferase;protein_id=WP_032283186.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 54264 56021 . + . ID=gene-AD39_RS16145;Name=ynbC;gbkey=Gene;gene=ynbC;gene_biotype=protein_coding;locus_tag=AD39_RS16145;old_locus_tag=AD39_1556 NZ_JJLH01000020.1 Protein Homology CDS 54264 56021 . + 0 ID=cds-WP_000431860.1;Parent=gene-AD39_RS16145;Dbxref=GenBank:WP_000431860.1;Name=WP_000431860.1;Ontology_term=GO:0008168,GO:0016787,GO:1904047;gbkey=CDS;gene=ynbC;go_function=methyltransferase activity|0008168||IEA,hydrolase activity|0016787||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415928.1;locus_tag=AD39_RS16145;product=bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase;protein_id=WP_000431860.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 56011 57327 . + . ID=gene-AD39_RS16140;Name=ynbD;gbkey=Gene;gene=ynbD;gene_biotype=protein_coding;locus_tag=AD39_RS16140;old_locus_tag=AD39_1557 NZ_JJLH01000020.1 Protein Homology CDS 56011 57327 . + 0 ID=cds-WP_000627385.1;Parent=gene-AD39_RS16140;Dbxref=GenBank:WP_000627385.1;Name=WP_000627385.1;gbkey=CDS;gene=ynbD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310040.2;locus_tag=AD39_RS16140;product=phosphatase PAP2/dual specificity phosphatase family protein;protein_id=WP_000627385.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 57378 57983 . - . ID=gene-AD39_RS16135;Name=azoR;gbkey=Gene;gene=azoR;gene_biotype=protein_coding;locus_tag=AD39_RS16135;old_locus_tag=AD39_1558 NZ_JJLH01000020.1 Protein Homology CDS 57378 57983 . - 0 ID=cds-WP_000048948.1;Parent=gene-AD39_RS16135;Dbxref=GenBank:WP_000048948.1;Name=WP_000048948.1;gbkey=CDS;gene=azoR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310041.1;locus_tag=AD39_RS16135;product=FMN-dependent NADH-azoreductase;protein_id=WP_000048948.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 58184 62086 . + . ID=gene-AD39_RS16130;Name=hrpA;gbkey=Gene;gene=hrpA;gene_biotype=protein_coding;locus_tag=AD39_RS16130;old_locus_tag=AD39_1559 NZ_JJLH01000020.1 Protein Homology CDS 58184 62086 . + 0 ID=cds-WP_032287533.1;Parent=gene-AD39_RS16130;Dbxref=GenBank:WP_032287533.1;Name=WP_032287533.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=hrpA;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310042.2;locus_tag=AD39_RS16130;product=ATP-dependent RNA helicase HrpA;protein_id=WP_032287533.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 62358 63158 . + . ID=gene-AD39_RS16125;Name=ydcF;gbkey=Gene;gene=ydcF;gene_biotype=protein_coding;locus_tag=AD39_RS16125;old_locus_tag=AD39_1560 NZ_JJLH01000020.1 Protein Homology CDS 62358 63158 . + 0 ID=cds-WP_001027942.1;Parent=gene-AD39_RS16125;Dbxref=GenBank:WP_001027942.1;Name=WP_001027942.1;gbkey=CDS;gene=ydcF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415932.1;locus_tag=AD39_RS16125;product=DUF218 domain-containing protein YdcF;protein_id=WP_001027942.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 63355 64794 . + . ID=gene-AD39_RS16120;Name=aldA;gbkey=Gene;gene=aldA;gene_biotype=protein_coding;locus_tag=AD39_RS16120;old_locus_tag=AD39_1561 NZ_JJLH01000020.1 Protein Homology CDS 63355 64794 . + 0 ID=cds-WP_001542885.1;Parent=gene-AD39_RS16120;Dbxref=GenBank:WP_001542885.1;Name=WP_001542885.1;Ontology_term=GO:0016620;gbkey=CDS;gene=aldA;go_function=oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310048.1;locus_tag=AD39_RS16120;product=aldehyde dehydrogenase;protein_id=WP_001542885.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 64836 65837 . - . ID=gene-AD39_RS16115;Name=gap;gbkey=Gene;gene=gap;gene_biotype=protein_coding;locus_tag=AD39_RS16115;old_locus_tag=AD39_1562 NZ_JJLH01000020.1 Protein Homology CDS 64836 65837 . - 0 ID=cds-WP_000048667.1;Parent=gene-AD39_RS16115;Dbxref=GenBank:WP_000048667.1;Name=WP_000048667.1;Ontology_term=GO:0006006,GO:0016620,GO:0050661,GO:0051287;gbkey=CDS;gene=gap;go_function=oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,NADP binding|0050661||IEA,NAD binding|0051287||IEA;go_process=glucose metabolic process|0006006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310049.1;locus_tag=AD39_RS16115;product=type I glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_000048667.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 66026 66556 . + . ID=gene-AD39_RS16110;Name=cybB;gbkey=Gene;gene=cybB;gene_biotype=protein_coding;locus_tag=AD39_RS16110;old_locus_tag=AD39_1563 NZ_JJLH01000020.1 Protein Homology CDS 66026 66556 . + 0 ID=cds-WP_001500404.1;Parent=gene-AD39_RS16110;Dbxref=GenBank:WP_001500404.1;Name=WP_001500404.1;Ontology_term=GO:0022904,GO:0009055,GO:0016020;gbkey=CDS;gene=cybB;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415935.2;locus_tag=AD39_RS16110;product=cytochrome b561;protein_id=WP_001500404.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 66801 66974 . + . ID=gene-AD39_RS16105;Name=AD39_RS16105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16105;old_locus_tag=AD39_1564 NZ_JJLH01000020.1 Protein Homology CDS 66801 66974 . + 0 ID=cds-WP_000731833.1;Parent=gene-AD39_RS16105;Dbxref=GenBank:WP_000731833.1;Name=WP_000731833.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415936.1;locus_tag=AD39_RS16105;product=periplasmic protein;protein_id=WP_000731833.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 67000 67068 . + . ID=gene-AD39_RS29680;Name=AD39_RS29680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29680 NZ_JJLH01000020.1 Protein Homology CDS 67000 67068 . + 0 ID=cds-WP_212981652.1;Parent=gene-AD39_RS29680;Dbxref=GenBank:WP_212981652.1;Name=WP_212981652.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051184.1;locus_tag=AD39_RS29680;product=hypothetical protein;protein_id=WP_212981652.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 67046 67195 . - . ID=gene-AD39_RS0124000;Name=hokB;gbkey=Gene;gene=hokB;gene_biotype=protein_coding;locus_tag=AD39_RS0124000 NZ_JJLH01000020.1 Protein Homology CDS 67046 67195 . - 0 ID=cds-WP_001320773.1;Parent=gene-AD39_RS0124000;Dbxref=GenBank:WP_001320773.1;Name=WP_001320773.1;gbkey=CDS;gene=hokB;inference=COORDINATES: similar to AA sequence:RefSeq:YP_025301.1;locus_tag=AD39_RS0124000;product=type I toxin-antitoxin system toxin HokB;protein_id=WP_001320773.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 67595 69235 . + . ID=gene-AD39_RS16100;Name=trg;gbkey=Gene;gene=trg;gene_biotype=protein_coding;locus_tag=AD39_RS16100;old_locus_tag=AD39_1565 NZ_JJLH01000020.1 Protein Homology CDS 67595 69235 . + 0 ID=cds-WP_001098531.1;Parent=gene-AD39_RS16100;Dbxref=GenBank:WP_001098531.1;Name=WP_001098531.1;gbkey=CDS;gene=trg;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415938.1;locus_tag=AD39_RS16100;product=methyl-accepting chemotaxis protein Trg;protein_id=WP_001098531.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 69273 70196 . - . ID=gene-AD39_RS16095;Name=ydcI;gbkey=Gene;gene=ydcI;gene_biotype=protein_coding;locus_tag=AD39_RS16095;old_locus_tag=AD39_1566 NZ_JJLH01000020.1 Protein Homology CDS 69273 70196 . - 0 ID=cds-WP_000414564.1;Parent=gene-AD39_RS16095;Dbxref=GenBank:WP_000414564.1;Name=WP_000414564.1;gbkey=CDS;gene=ydcI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310054.2;locus_tag=AD39_RS16095;product=LysR substrate-binding domain-containing protein;protein_id=WP_000414564.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 70413 71756 . + . ID=gene-AD39_RS16090;Name=hglS;gbkey=Gene;gene=hglS;gene_biotype=protein_coding;gene_synonym=ydcJ;locus_tag=AD39_RS16090;old_locus_tag=AD39_1567 NZ_JJLH01000020.1 Protein Homology CDS 70413 71756 . + 0 ID=cds-WP_000013786.1;Parent=gene-AD39_RS16090;Dbxref=GenBank:WP_000013786.1;Name=WP_000013786.1;Ontology_term=GO:0051213;gbkey=CDS;gene=hglS;go_function=dioxygenase activity|0051213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415940.1;locus_tag=AD39_RS16090;product=2-oxoadipate dioxygenase/decarboxylase HglS;protein_id=WP_000013786.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 71981 73636 . + . ID=gene-AD39_RS16085;Name=opgD;gbkey=Gene;gene=opgD;gene_biotype=protein_coding;gene_synonym=mdoD;locus_tag=AD39_RS16085;old_locus_tag=AD39_1568 NZ_JJLH01000020.1 Protein Homology CDS 71981 73636 . + 0 ID=cds-WP_032294097.1;Parent=gene-AD39_RS16085;Dbxref=GenBank:WP_032294097.1;Name=WP_032294097.1;gbkey=CDS;gene=opgD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707648.1;locus_tag=AD39_RS16085;product=glucan biosynthesis protein OpgD;protein_id=WP_032294097.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 73776 74000 . + . ID=gene-AD39_RS16080;Name=ydcH;gbkey=Gene;gene=ydcH;gene_biotype=protein_coding;locus_tag=AD39_RS16080;old_locus_tag=AD39_1569 NZ_JJLH01000020.1 Protein Homology CDS 73776 74000 . + 0 ID=cds-WP_001296778.1;Parent=gene-AD39_RS16080;Dbxref=GenBank:WP_001296778.1;Name=WP_001296778.1;gbkey=CDS;gene=ydcH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415943.4;locus_tag=AD39_RS16080;product=YdcH family protein;protein_id=WP_001296778.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 74063 74599 . + . ID=gene-AD39_RS16075;Name=rimL;gbkey=Gene;gene=rimL;gene_biotype=protein_coding;locus_tag=AD39_RS16075;old_locus_tag=AD39_1570 NZ_JJLH01000020.1 Protein Homology CDS 74063 74599 . + 0 ID=cds-WP_000140877.1;Parent=gene-AD39_RS16075;Dbxref=GenBank:WP_000140877.1;Name=WP_000140877.1;gbkey=CDS;gene=rimL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707645.2;locus_tag=AD39_RS16075;product=50S ribosomal protein L7/L12-serine acetyltransferase;protein_id=WP_000140877.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 74594 75574 . - . ID=gene-AD39_RS16070;Name=ydcK;gbkey=Gene;gene=ydcK;gene_biotype=protein_coding;locus_tag=AD39_RS16070;old_locus_tag=AD39_1571 NZ_JJLH01000020.1 Protein Homology CDS 74594 75574 . - 0 ID=cds-WP_001234054.1;Parent=gene-AD39_RS16070;Dbxref=GenBank:WP_001234054.1;Name=WP_001234054.1;gbkey=CDS;gene=ydcK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310060.1;locus_tag=AD39_RS16070;product=YdcK family protein;protein_id=WP_001234054.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 75698 76690 . + . ID=gene-AD39_RS16065;Name=tehA;gbkey=Gene;gene=tehA;gene_biotype=protein_coding;locus_tag=AD39_RS16065;old_locus_tag=AD39_1572 NZ_JJLH01000020.1 Protein Homology CDS 75698 76690 . + 0 ID=cds-WP_001341359.1;Parent=gene-AD39_RS16065;Dbxref=GenBank:WP_001341359.1;Name=WP_001341359.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=tehA;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310061.1;locus_tag=AD39_RS16065;product=dicarboxylate transporter/tellurite-resistance protein TehA;protein_id=WP_001341359.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 76687 77280 . + . ID=gene-AD39_RS16060;Name=tehB;gbkey=Gene;gene=tehB;gene_biotype=protein_coding;locus_tag=AD39_RS16060;old_locus_tag=AD39_1573 NZ_JJLH01000020.1 Protein Homology CDS 76687 77280 . + 0 ID=cds-WP_000586732.1;Parent=gene-AD39_RS16060;Dbxref=GenBank:WP_000586732.1;Name=WP_000586732.1;Ontology_term=GO:0046690,GO:0008757;gbkey=CDS;gene=tehB;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=response to tellurium ion|0046690||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415947.1;locus_tag=AD39_RS16060;product=tellurite resistance methyltransferase TehB;protein_id=WP_000586732.1;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 77583 78251 . + . ID=gene-AD39_RS16055;Name=ydcL;gbkey=Gene;gene=ydcL;gene_biotype=protein_coding;locus_tag=AD39_RS16055;old_locus_tag=AD39_1575 NZ_JJLH01000020.1 Protein Homology CDS 77583 78251 . + 0 ID=cds-WP_001261013.1;Parent=gene-AD39_RS16055;Dbxref=GenBank:WP_001261013.1;Name=WP_001261013.1;gbkey=CDS;gene=ydcL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310063.1;locus_tag=AD39_RS16055;product=DUF3313 domain-containing protein;protein_id=WP_001261013.1;transl_table=11 NZ_JJLH01000020.1 RefSeq pseudogene 78269 78770 . - . ID=gene-AD39_RS26190;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=pseudogene;locus_tag=AD39_RS26190;pseudo=true NZ_JJLH01000020.1 Protein Homology CDS 78269 78770 . - 0 ID=cds-AD39_RS26190;Parent=gene-AD39_RS26190;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;gene=tnpA;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313209.1;locus_tag=AD39_RS26190;product=IS200/IS605 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000020.1 RefSeq gene 78778 79278 . + . ID=gene-AD39_RS16045;Name=AD39_RS16045;end_range=79278,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16045;old_locus_tag=AD39_1578;partial=true NZ_JJLH01000020.1 Protein Homology CDS 78778 79278 . + 0 ID=cds-WP_148725093.1;Parent=gene-AD39_RS16045;Dbxref=GenBank:WP_148725093.1;Name=WP_148725093.1;Ontology_term=GO:0006310,GO:0032196,GO:0003677,GO:0004519,GO:0046872;end_range=79278,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA,metal ion binding|0046872||IEA;go_process=DNA recombination|0006310||IEA,transposition|0032196||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415949.3;locus_tag=AD39_RS16045;partial=true;product=RNA-guided endonuclease InsQ/TnpB family protein;protein_id=WP_148725093.1;transl_table=11 ##sequence-region NZ_JJLH01000021.1 1 33382 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000021.1 RefSeq region 1 33382 . + . ID=NZ_JJLH01000021.1:1..33382;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000021.1 RefSeq gene 411 683 . - . ID=gene-AD39_RS16040;Name=AD39_RS16040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16040;old_locus_tag=AD39_1581 NZ_JJLH01000021.1 Protein Homology CDS 411 683 . - 0 ID=cds-WP_001402113.1;Parent=gene-AD39_RS16040;Dbxref=GenBank:WP_001402113.1;Name=WP_001402113.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001242259.1;locus_tag=AD39_RS16040;product=HigA family addiction module antitoxin;protein_id=WP_001402113.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 686 1732 . - . ID=gene-AD39_RS16035;Name=AD39_RS16035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16035;old_locus_tag=AD39_1582 NZ_JJLH01000021.1 Protein Homology CDS 686 1732 . - 0 ID=cds-WP_001402114.1;Parent=gene-AD39_RS16035;Dbxref=GenBank:WP_001402114.1;Name=WP_001402114.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706157.1;locus_tag=AD39_RS16035;product=ImpA family type VI secretion system protein;protein_id=WP_001402114.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 1743 2738 . - . ID=gene-AD39_RS16030;Name=tssG;gbkey=Gene;gene=tssG;gene_biotype=protein_coding;locus_tag=AD39_RS16030;old_locus_tag=AD39_1583 NZ_JJLH01000021.1 Protein Homology CDS 1743 2738 . - 0 ID=cds-WP_001402115.1;Parent=gene-AD39_RS16030;Dbxref=GenBank:WP_001402115.1;Name=WP_001402115.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssG;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001601590.1;locus_tag=AD39_RS16030;product=type VI secretion system baseplate subunit TssG;protein_id=WP_001402115.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 2735 4618 . - . ID=gene-AD39_RS16025;Name=tssF;gbkey=Gene;gene=tssF;gene_biotype=protein_coding;locus_tag=AD39_RS16025;old_locus_tag=AD39_1584 NZ_JJLH01000021.1 Protein Homology CDS 2735 4618 . - 0 ID=cds-WP_001402116.1;Parent=gene-AD39_RS16025;Dbxref=GenBank:WP_001402116.1;Name=WP_001402116.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssF;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706159.1;locus_tag=AD39_RS16025;product=type VI secretion system baseplate subunit TssF;protein_id=WP_001402116.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 4634 5128 . - . ID=gene-AD39_RS16020;Name=tssE;gbkey=Gene;gene=tssE;gene_biotype=protein_coding;locus_tag=AD39_RS16020;old_locus_tag=AD39_1585 NZ_JJLH01000021.1 Protein Homology CDS 4634 5128 . - 0 ID=cds-WP_001402117.1;Parent=gene-AD39_RS16020;Dbxref=GenBank:WP_001402117.1;Name=WP_001402117.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssE;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706160.2;locus_tag=AD39_RS16020;product=type VI secretion system baseplate subunit TssE;protein_id=WP_001402117.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 5125 5955 . - . ID=gene-AD39_RS16015;Name=AD39_RS16015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16015;old_locus_tag=AD39_1586 NZ_JJLH01000021.1 Protein Homology CDS 5125 5955 . - 0 ID=cds-WP_001402118.1;Parent=gene-AD39_RS16015;Dbxref=GenBank:WP_001402118.1;Name=WP_001402118.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016233830.1;locus_tag=AD39_RS16015;product=type VI secretion system accessory protein TagJ;protein_id=WP_001402118.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 5942 6856 . - . ID=gene-AD39_RS16010;Name=tagK;gbkey=Gene;gene=tagK;gene_biotype=protein_coding;locus_tag=AD39_RS16010;old_locus_tag=AD39_1587 NZ_JJLH01000021.1 Protein Homology CDS 5942 6856 . - 0 ID=cds-WP_032287535.1;Parent=gene-AD39_RS16010;Dbxref=GenBank:WP_032287535.1;Name=WP_032287535.1;gbkey=CDS;gene=tagK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001402119.1;locus_tag=AD39_RS16010;product=type VI secretion system-associated protein TagK;protein_id=WP_032287535.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 7189 9822 . + . ID=gene-AD39_RS0124020;Name=tssH;gbkey=Gene;gene=tssH;gene_biotype=protein_coding;gene_synonym=clpV;locus_tag=AD39_RS0124020 NZ_JJLH01000021.1 Protein Homology CDS 7189 9822 . + 0 ID=cds-WP_001542643.1;Parent=gene-AD39_RS0124020;Dbxref=GenBank:WP_001542643.1;Name=WP_001542643.1;Ontology_term=GO:0033103,GO:0016887,GO:0033104;gbkey=CDS;gene=tssH;go_component=type VI protein secretion system complex|0033104||IEA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001601593.1;locus_tag=AD39_RS0124020;product=type VI secretion system ATPase TssH;protein_id=WP_001542643.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 9835 10398 . + . ID=gene-AD39_RS16005;Name=AD39_RS16005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16005;old_locus_tag=AD39_1589 NZ_JJLH01000021.1 Protein Homology CDS 9835 10398 . + 0 ID=cds-WP_001402121.1;Parent=gene-AD39_RS16005;Dbxref=GenBank:WP_001402121.1;Name=WP_001402121.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001402121.1;locus_tag=AD39_RS16005;product=hypothetical protein;protein_id=WP_001402121.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 10401 10691 . + . ID=gene-AD39_RS16000;Name=AD39_RS16000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS16000;old_locus_tag=AD39_1590 NZ_JJLH01000021.1 Protein Homology CDS 10401 10691 . + 0 ID=cds-WP_000144225.1;Parent=gene-AD39_RS16000;Dbxref=GenBank:WP_000144225.1;Name=WP_000144225.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000175185.1;locus_tag=AD39_RS16000;product=hypothetical protein;protein_id=WP_000144225.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 10753 11298 . + . ID=gene-AD39_RS15995;Name=tssB;gbkey=Gene;gene=tssB;gene_biotype=protein_coding;locus_tag=AD39_RS15995;old_locus_tag=AD39_1591 NZ_JJLH01000021.1 Protein Homology CDS 10753 11298 . + 0 ID=cds-WP_000996814.1;Parent=gene-AD39_RS15995;Dbxref=GenBank:WP_000996814.1;Name=WP_000996814.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssB;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001558593.1;locus_tag=AD39_RS15995;product=type VI secretion system contractile sheath small subunit;protein_id=WP_000996814.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 11323 12837 . + . ID=gene-AD39_RS15990;Name=tssC;gbkey=Gene;gene=tssC;gene_biotype=protein_coding;locus_tag=AD39_RS15990;old_locus_tag=AD39_1592 NZ_JJLH01000021.1 Protein Homology CDS 11323 12837 . + 0 ID=cds-WP_000245849.1;Parent=gene-AD39_RS15990;Dbxref=GenBank:WP_000245849.1;Name=WP_000245849.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;gene=tssC;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000013884.1;locus_tag=AD39_RS15990;product=type VI secretion system contractile sheath large subunit;protein_id=WP_000245849.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 12890 13375 . + . ID=gene-AD39_RS15985;Name=AD39_RS15985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15985;old_locus_tag=AD39_1593 NZ_JJLH01000021.1 Protein Homology CDS 12890 13375 . + 0 ID=cds-WP_000533466.1;Parent=gene-AD39_RS15985;Dbxref=GenBank:WP_000533466.1;Name=WP_000533466.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459275.1;locus_tag=AD39_RS15985;product=type VI secretion system amidase effector protein Tae4;protein_id=WP_000533466.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 13372 13743 . + . ID=gene-AD39_RS0124025;Name=AD39_RS0124025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124025 NZ_JJLH01000021.1 Protein Homology CDS 13372 13743 . + 0 ID=cds-WP_000871595.1;Parent=gene-AD39_RS0124025;Dbxref=GenBank:WP_000871595.1;Name=WP_000871595.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016505549.1;locus_tag=AD39_RS0124025;product=T6SS amidase immunity protein Tai4 family protein;protein_id=WP_000871595.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 13857 14342 . + . ID=gene-AD39_RS15980;Name=AD39_RS15980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15980;old_locus_tag=AD39_1595 NZ_JJLH01000021.1 Protein Homology CDS 13857 14342 . + 0 ID=cds-WP_000119441.1;Parent=gene-AD39_RS15980;Dbxref=GenBank:WP_000119441.1;Name=WP_000119441.1;Ontology_term=GO:0033103;gbkey=CDS;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459277.1;locus_tag=AD39_RS15980;product=Hcp family type VI secretion system effector;protein_id=WP_000119441.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 14410 14943 . + . ID=gene-AD39_RS15975;Name=tssJ;gbkey=Gene;gene=tssJ;gene_biotype=protein_coding;locus_tag=AD39_RS15975;old_locus_tag=AD39_1596 NZ_JJLH01000021.1 Protein Homology CDS 14410 14943 . + 0 ID=cds-WP_001402122.1;Parent=gene-AD39_RS15975;Dbxref=GenBank:WP_001402122.1;Name=WP_001402122.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssJ;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001045932.1;locus_tag=AD39_RS15975;product=type VI secretion system lipoprotein TssJ;protein_id=WP_001402122.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 14947 16290 . + . ID=gene-AD39_RS15970;Name=tssK;gbkey=Gene;gene=tssK;gene_biotype=protein_coding;locus_tag=AD39_RS15970;old_locus_tag=AD39_1597 NZ_JJLH01000021.1 Protein Homology CDS 14947 16290 . + 0 ID=cds-WP_032287536.1;Parent=gene-AD39_RS15970;Dbxref=GenBank:WP_032287536.1;Name=WP_032287536.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssK;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459279.1;locus_tag=AD39_RS15970;product=type VI secretion system baseplate subunit TssK;protein_id=WP_032287536.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 16287 17603 . + . ID=gene-AD39_RS15965;Name=tssL;gbkey=Gene;gene=tssL;gene_biotype=protein_coding;locus_tag=AD39_RS15965;old_locus_tag=AD39_1598 NZ_JJLH01000021.1 Protein Homology CDS 16287 17603 . + 0 ID=cds-WP_032282999.1;Parent=gene-AD39_RS15965;Dbxref=GenBank:WP_032282999.1;Name=WP_032282999.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;gene=tssL;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459280.1;locus_tag=AD39_RS15965;product=type VI secretion system protein TssL%2C long form;protein_id=WP_032282999.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 17609 18283 . + . ID=gene-AD39_RS15960;Name=AD39_RS15960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15960;old_locus_tag=AD39_1599 NZ_JJLH01000021.1 Protein Homology CDS 17609 18283 . + 0 ID=cds-WP_032283000.1;Parent=gene-AD39_RS15960;Dbxref=GenBank:WP_032283000.1;Name=WP_032283000.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001060994.1;locus_tag=AD39_RS15960;product=hypothetical protein;protein_id=WP_032283000.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 18292 18579 . + . ID=gene-AD39_RS15955;Name=AD39_RS15955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15955;old_locus_tag=AD39_1600 NZ_JJLH01000021.1 Protein Homology CDS 18292 18579 . + 0 ID=cds-WP_001542644.1;Parent=gene-AD39_RS15955;Dbxref=GenBank:WP_001542644.1;Name=WP_001542644.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016233840.1;locus_tag=AD39_RS15955;product=hypothetical protein;protein_id=WP_001542644.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 18579 22445 . + . ID=gene-AD39_RS15950;Name=tssM;gbkey=Gene;gene=tssM;gene_biotype=protein_coding;locus_tag=AD39_RS15950;old_locus_tag=AD39_1601 NZ_JJLH01000021.1 Protein Homology CDS 18579 22445 . + 0 ID=cds-WP_032283001.1;Parent=gene-AD39_RS15950;Dbxref=GenBank:WP_032283001.1;Name=WP_032283001.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssM;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_459283.1;locus_tag=AD39_RS15950;product=type VI secretion system membrane subunit TssM;protein_id=WP_032283001.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 22445 23221 . + . ID=gene-AD39_RS15945;Name=AD39_RS15945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15945;old_locus_tag=AD39_1602 NZ_JJLH01000021.1 Protein Homology CDS 22445 23221 . + 0 ID=cds-WP_032286023.1;Parent=gene-AD39_RS15945;Dbxref=GenBank:WP_032286023.1;Name=WP_032286023.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001254114.1;locus_tag=AD39_RS15945;product=TagF domain-containing protein;protein_id=WP_032286023.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 23276 24004 . + . ID=gene-AD39_RS0124030;Name=AD39_RS0124030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124030;old_locus_tag=AD39_1603 NZ_JJLH01000021.1 Protein Homology CDS 23276 24004 . + 0 ID=cds-WP_023155449.1;Parent=gene-AD39_RS0124030;Dbxref=GenBank:WP_023155449.1;Name=WP_023155449.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000036628.1;locus_tag=AD39_RS0124030;product=hypothetical protein;protein_id=WP_023155449.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 24001 24372 . + . ID=gene-AD39_RS15940;Name=AD39_RS15940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15940;old_locus_tag=AD39_1604 NZ_JJLH01000021.1 Protein Homology CDS 24001 24372 . + 0 ID=cds-WP_032283002.1;Parent=gene-AD39_RS15940;Dbxref=GenBank:WP_032283002.1;Name=WP_032283002.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001078805.1;locus_tag=AD39_RS15940;product=hypothetical protein;protein_id=WP_032283002.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 24397 26616 . + . ID=gene-AD39_RS15935;Name=AD39_RS15935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15935;old_locus_tag=AD39_1605 NZ_JJLH01000021.1 Protein Homology CDS 24397 26616 . + 0 ID=cds-WP_032283003.1;Parent=gene-AD39_RS15935;Dbxref=GenBank:WP_032283003.1;Name=WP_032283003.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001542647.1;locus_tag=AD39_RS15935;product=type VI secretion system Vgr family protein;protein_id=WP_032283003.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 26644 27075 . + . ID=gene-AD39_RS15930;Name=AD39_RS15930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15930;old_locus_tag=AD39_1606 NZ_JJLH01000021.1 Protein Homology CDS 26644 27075 . + 0 ID=cds-WP_001402128.1;Parent=gene-AD39_RS15930;Dbxref=GenBank:WP_001402128.1;Name=WP_001402128.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001402128.1;locus_tag=AD39_RS15930;product=DcrB-related protein;protein_id=WP_001402128.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 27106 31617 . + . ID=gene-AD39_RS15925;Name=AD39_RS15925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15925;old_locus_tag=AD39_1607 NZ_JJLH01000021.1 Protein Homology CDS 27106 31617 . + 0 ID=cds-WP_032287537.1;Parent=gene-AD39_RS15925;Dbxref=GenBank:WP_032287537.1;Name=WP_032287537.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001402129.1;locus_tag=AD39_RS15925;product=RHS repeat-associated core domain-containing protein;protein_id=WP_032287537.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 31668 32159 . + . ID=gene-AD39_RS0124035;Name=AD39_RS0124035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124035;old_locus_tag=AD39_1608 NZ_JJLH01000021.1 Protein Homology CDS 31668 32159 . + 0 ID=cds-WP_032287538.1;Parent=gene-AD39_RS0124035;Dbxref=GenBank:WP_032287538.1;Name=WP_032287538.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000617564.1;locus_tag=AD39_RS0124035;product=hypothetical protein;protein_id=WP_032287538.1;transl_table=11 NZ_JJLH01000021.1 RefSeq gene 32616 33382 . + . ID=gene-AD39_RS15920;Name=AD39_RS15920;end_range=33382,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15920;old_locus_tag=AD39_1609;partial=true NZ_JJLH01000021.1 Protein Homology CDS 32616 33382 . + 0 ID=cds-WP_032287501.1-3;Parent=gene-AD39_RS15920;Dbxref=GenBank:WP_032287501.1;Name=WP_032287501.1;Ontology_term=GO:0006313,GO:0004803;end_range=33382,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000420980.1;locus_tag=AD39_RS15920;partial=true;product=ISAs1-like element ISEc1 family transposase;protein_id=WP_032287501.1;transl_table=11 ##sequence-region NZ_JJLH01000022.1 1 40601 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000022.1 RefSeq region 1 40601 . + . ID=NZ_JJLH01000022.1:1..40601;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000022.1 RefSeq pseudogene 1 726 . + . ID=gene-AD39_RS15915;Name=AD39_RS15915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS15915;old_locus_tag=AD39_1610;partial=true;pseudo=true;start_range=.,1 NZ_JJLH01000022.1 Protein Homology CDS 1 726 . + 0 ID=cds-AD39_RS15915;Parent=gene-AD39_RS15915;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000420980.1;locus_tag=AD39_RS15915;partial=true;product=ISAs1-like element ISEc1 family transposase;pseudo=true;start_range=.,1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 1127 1483 . + . ID=gene-AD39_RS0124040;Name=AD39_RS0124040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124040 NZ_JJLH01000022.1 Protein Homology CDS 1127 1483 . + 0 ID=cds-WP_000635646.1;Parent=gene-AD39_RS0124040;Dbxref=GenBank:WP_000635646.1;Name=WP_000635646.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000635646.1;locus_tag=AD39_RS0124040;product=hypothetical protein;protein_id=WP_000635646.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 1522 1698 . - . ID=gene-AD39_RS29690;Name=AD39_RS29690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29690;old_locus_tag=AD39_1611 NZ_JJLH01000022.1 Protein Homology CDS 1522 1698 . - 0 ID=cds-WP_425293220.1;Parent=gene-AD39_RS29690;Dbxref=GenBank:WP_425293220.1;Name=WP_425293220.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000541010.1;locus_tag=AD39_RS29690;product=SymE family type I addiction module toxin;protein_id=WP_425293220.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 2248 2481 . + . ID=gene-AD39_RS15910;Name=pptA;gbkey=Gene;gene=pptA;gene_biotype=protein_coding;locus_tag=AD39_RS15910;old_locus_tag=AD39_1612 NZ_JJLH01000022.1 Protein Homology CDS 2248 2481 . + 0 ID=cds-WP_001120143.1;Parent=gene-AD39_RS15910;Dbxref=GenBank:WP_001120143.1;Name=WP_001120143.1;gbkey=CDS;gene=pptA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415978.1;locus_tag=AD39_RS15910;product=tautomerase PptA;protein_id=WP_001120143.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 2478 3047 . - . ID=gene-AD39_RS15905;Name=yddH;gbkey=Gene;gene=yddH;gene_biotype=protein_coding;locus_tag=AD39_RS15905;old_locus_tag=AD39_1613 NZ_JJLH01000022.1 Protein Homology CDS 2478 3047 . - 0 ID=cds-WP_024166591.1;Parent=gene-AD39_RS15905;Dbxref=GenBank:WP_024166591.1;Name=WP_024166591.1;Ontology_term=GO:0010181,GO:0016491;gbkey=CDS;gene=yddH;go_function=FMN binding|0010181||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415979.2;locus_tag=AD39_RS15905;product=flavin reductase family protein;protein_id=WP_024166591.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 3220 4065 . + . ID=gene-AD39_RS15900;Name=nhoA;gbkey=Gene;gene=nhoA;gene_biotype=protein_coding;locus_tag=AD39_RS15900;old_locus_tag=AD39_1614 NZ_JJLH01000022.1 Protein Homology CDS 3220 4065 . + 0 ID=cds-WP_023155646.1;Parent=gene-AD39_RS15900;Dbxref=GenBank:WP_023155646.1;Name=WP_023155646.1;Ontology_term=GO:0016407;gbkey=CDS;gene=nhoA;go_function=acetyltransferase activity|0016407||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415980.1;locus_tag=AD39_RS15900;product=N-hydroxyarylamine O-acetyltransferase;protein_id=WP_023155646.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 4161 5054 . - . ID=gene-AD39_RS15895;Name=yddE;gbkey=Gene;gene=yddE;gene_biotype=protein_coding;locus_tag=AD39_RS15895;old_locus_tag=AD39_1615 NZ_JJLH01000022.1 Protein Homology CDS 4161 5054 . - 0 ID=cds-WP_032287540.1;Parent=gene-AD39_RS15895;Dbxref=GenBank:WP_032287540.1;Name=WP_032287540.1;Ontology_term=GO:0009058,GO:0003824;gbkey=CDS;gene=yddE;go_function=catalytic activity|0003824||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415981.1;locus_tag=AD39_RS15895;product=PhzF family isomerase;protein_id=WP_032287540.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 5133 5813 . - . ID=gene-AD39_RS15890;Name=narI;gbkey=Gene;gene=narI;gene_biotype=protein_coding;locus_tag=AD39_RS15890;old_locus_tag=AD39_1616 NZ_JJLH01000022.1 Protein Homology CDS 5133 5813 . - 0 ID=cds-WP_000617115.1;Parent=gene-AD39_RS15890;Dbxref=GenBank:WP_000617115.1;Name=WP_000617115.1;Ontology_term=GO:0019645,GO:0008940,GO:0009325;gbkey=CDS;gene=narI;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310095.1;locus_tag=AD39_RS15890;product=respiratory nitrate reductase subunit gamma;protein_id=WP_000617115.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 5810 6505 . - . ID=gene-AD39_RS15885;Name=narW;gbkey=Gene;gene=narW;gene_biotype=protein_coding;locus_tag=AD39_RS15885;old_locus_tag=AD39_1617 NZ_JJLH01000022.1 Protein Homology CDS 5810 6505 . - 0 ID=cds-WP_001166353.1;Parent=gene-AD39_RS15885;Dbxref=GenBank:WP_001166353.1;Name=WP_001166353.1;Ontology_term=GO:0051131,GO:0051082;gbkey=CDS;gene=narW;go_function=unfolded protein binding|0051082||IEA;go_process=chaperone-mediated protein complex assembly|0051131||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415983.1;locus_tag=AD39_RS15885;product=nitrate reductase molybdenum cofactor assembly chaperone;protein_id=WP_001166353.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 6505 8049 . - . ID=gene-AD39_RS15880;Name=narH;gbkey=Gene;gene=narH;gene_biotype=protein_coding;locus_tag=AD39_RS15880;old_locus_tag=AD39_1618 NZ_JJLH01000022.1 Protein Homology CDS 6505 8049 . - 0 ID=cds-WP_032287541.1;Parent=gene-AD39_RS15880;Dbxref=GenBank:WP_032287541.1;Name=WP_032287541.1;Ontology_term=GO:0042126,GO:0008940,GO:0009325;gbkey=CDS;gene=narH;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310097.1;locus_tag=AD39_RS15880;product=nitrate reductase subunit beta;protein_id=WP_032287541.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 8046 11786 . - . ID=gene-AD39_RS15875;Name=narZ;gbkey=Gene;gene=narZ;gene_biotype=protein_coding;locus_tag=AD39_RS15875;old_locus_tag=AD39_1619 NZ_JJLH01000022.1 Protein Homology CDS 8046 11786 . - 0 ID=cds-WP_032287542.1;Parent=gene-AD39_RS15875;Dbxref=GenBank:WP_032287542.1;Name=WP_032287542.1;gbkey=CDS;gene=narZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415985.1;locus_tag=AD39_RS15875;product=nitrate reductase Z subunit alpha;protein_id=WP_032287542.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 11868 13256 . - . ID=gene-AD39_RS15870;Name=narU;gbkey=Gene;gene=narU;gene_biotype=protein_coding;locus_tag=AD39_RS15870;old_locus_tag=AD39_1620 NZ_JJLH01000022.1 Protein Homology CDS 11868 13256 . - 0 ID=cds-WP_001207905.1;Parent=gene-AD39_RS15870;Dbxref=GenBank:WP_001207905.1;Name=WP_001207905.1;gbkey=CDS;gene=narU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415986.1;locus_tag=AD39_RS15870;product=nitrate/nitrite transporter NarU;protein_id=WP_001207905.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 13580 14875 . - . ID=gene-AD39_RS0124050;Name=AD39_RS0124050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124050 NZ_JJLH01000022.1 Protein Homology CDS 13580 14875 . - 0 ID=cds-WP_000849671.1;Parent=gene-AD39_RS0124050;Dbxref=GenBank:WP_000849671.1;Name=WP_000849671.1;Ontology_term=GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001517967.1;locus_tag=AD39_RS0124050;product=leucine-rich repeat domain-containing protein;protein_id=WP_000849671.1;transl_table=11 NZ_JJLH01000022.1 RefSeq pseudogene 14949 15224 . - . ID=gene-AD39_RS15865;Name=yddL;gbkey=Gene;gene=yddL;gene_biotype=pseudogene;locus_tag=AD39_RS15865;old_locus_tag=AD39_1622;partial=true;pseudo=true;start_range=.,14949 NZ_JJLH01000022.1 Protein Homology CDS 14949 15224 . - 0 ID=cds-AD39_RS15865;Parent=gene-AD39_RS15865;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0034220,GO:0015288,GO:0009279,GO:0016020;gbkey=CDS;gene=yddL;go_component=cell outer membrane|0009279||IEA,membrane|0016020||IEA;go_function=porin activity|0015288||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310103.1;locus_tag=AD39_RS15865;partial=true;product=porin;pseudo=true;start_range=.,14949;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 15483 16364 . - . ID=gene-AD39_RS15860;Name=yddG;gbkey=Gene;gene=yddG;gene_biotype=protein_coding;locus_tag=AD39_RS15860;old_locus_tag=AD39_1623 NZ_JJLH01000022.1 Protein Homology CDS 15483 16364 . - 0 ID=cds-WP_000198214.1;Parent=gene-AD39_RS15860;Dbxref=GenBank:WP_000198214.1;Name=WP_000198214.1;gbkey=CDS;gene=yddG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415990.5;locus_tag=AD39_RS15860;product=aromatic amino acid efflux DMT transporter YddG;protein_id=WP_000198214.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 16596 19643 . + . ID=gene-AD39_RS15850;Name=fdnG;gbkey=Gene;gene=fdnG;gene_biotype=protein_coding;locus_tag=AD39_RS15850;old_locus_tag=AD39_1625 NZ_JJLH01000022.1 Protein Homology CDS 16596 19643 . + 0 ID=cds-WP_077248789.1;Parent=gene-AD39_RS15850;Dbxref=GenBank:WP_077248789.1;Name=WP_077248789.1;Ontology_term=GO:0015942,GO:0008863,GO:0009055,GO:0043546,GO:0047111,GO:0009326;gbkey=CDS;gene=fdnG;go_component=formate dehydrogenase complex|0009326||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,electron transfer activity|0009055||IEA,molybdopterin cofactor binding|0043546||IEA,formate dehydrogenase (cytochrome-c-553) activity|0047111||IEA;go_process=formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310105.1;locus_tag=AD39_RS15850;product=formate dehydrogenase-N subunit alpha;protein_id=WP_077248789.1;transl_except=(pos:17181..17183%2Caa:Sec);transl_table=11 NZ_JJLH01000022.1 RefSeq gene 19656 20540 . + . ID=gene-AD39_RS15845;Name=fdnH;gbkey=Gene;gene=fdnH;gene_biotype=protein_coding;locus_tag=AD39_RS15845;old_locus_tag=AD39_1626 NZ_JJLH01000022.1 Protein Homology CDS 19656 20540 . + 0 ID=cds-WP_001240582.1;Parent=gene-AD39_RS15845;Dbxref=GenBank:WP_001240582.1;Name=WP_001240582.1;gbkey=CDS;gene=fdnH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415992.1;locus_tag=AD39_RS15845;product=formate dehydrogenase N subunit beta;protein_id=WP_001240582.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 20533 21186 . + . ID=gene-AD39_RS15840;Name=fdnI;gbkey=Gene;gene=fdnI;gene_biotype=protein_coding;locus_tag=AD39_RS15840;old_locus_tag=AD39_1627 NZ_JJLH01000022.1 Protein Homology CDS 20533 21186 . + 0 ID=cds-WP_000045648.1;Parent=gene-AD39_RS15840;Dbxref=GenBank:WP_000045648.1;Name=WP_000045648.1;gbkey=CDS;gene=fdnI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310107.1;locus_tag=AD39_RS15840;product=formate dehydrogenase-N subunit gamma;protein_id=WP_000045648.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 21237 21521 . - . ID=gene-AD39_RS15835;Name=yddM;gbkey=Gene;gene=yddM;gene_biotype=protein_coding;locus_tag=AD39_RS15835;old_locus_tag=AD39_1628 NZ_JJLH01000022.1 Protein Homology CDS 21237 21521 . - 0 ID=cds-WP_000781370.1;Parent=gene-AD39_RS15835;Dbxref=GenBank:WP_000781370.1;Name=WP_000781370.1;Ontology_term=GO:0003677;gbkey=CDS;gene=yddM;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415994.4;locus_tag=AD39_RS15835;product=HigA family addiction module antitoxin;protein_id=WP_000781370.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 21668 22678 . - . ID=gene-AD39_RS15830;Name=adhP;gbkey=Gene;gene=adhP;gene_biotype=protein_coding;locus_tag=AD39_RS15830;old_locus_tag=AD39_1629 NZ_JJLH01000022.1 Protein Homology CDS 21668 22678 . - 0 ID=cds-WP_032283207.1;Parent=gene-AD39_RS15830;Dbxref=GenBank:WP_032283207.1;Name=WP_032283207.1;gbkey=CDS;gene=adhP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310109.2;locus_tag=AD39_RS15830;product=alcohol dehydrogenase AdhP;protein_id=WP_032283207.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 22812 24509 . - . ID=gene-AD39_RS15825;Name=maeA;gbkey=Gene;gene=maeA;gene_biotype=protein_coding;locus_tag=AD39_RS15825;old_locus_tag=AD39_1630 NZ_JJLH01000022.1 Protein Homology CDS 22812 24509 . - 0 ID=cds-WP_001634081.1;Parent=gene-AD39_RS15825;Dbxref=GenBank:WP_001634081.1;Name=WP_001634081.1;gbkey=CDS;gene=maeA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707611.2;locus_tag=AD39_RS15825;product=malate dehydrogenase;protein_id=WP_001634081.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 24666 24803 . - . ID=gene-AD39_RS15820;Name=sra;gbkey=Gene;gene=sra;gene_biotype=protein_coding;locus_tag=AD39_RS15820;old_locus_tag=AD39_1631 NZ_JJLH01000022.1 Protein Homology CDS 24666 24803 . - 0 ID=cds-WP_000841554.1;Parent=gene-AD39_RS15820;Dbxref=GenBank:WP_000841554.1;Name=WP_000841554.1;gbkey=CDS;gene=sra;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310111.1;locus_tag=AD39_RS15820;product=stationary-phase-induced ribosome-associated protein;protein_id=WP_000841554.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 24905 25120 . - . ID=gene-AD39_RS15815;Name=bdm;gbkey=Gene;gene=bdm;gene_biotype=protein_coding;locus_tag=AD39_RS15815;old_locus_tag=AD39_1632 NZ_JJLH01000022.1 Protein Homology CDS 24905 25120 . - 0 ID=cds-WP_000495766.1;Parent=gene-AD39_RS15815;Dbxref=GenBank:WP_000495766.1;Name=WP_000495766.1;gbkey=CDS;gene=bdm;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310112.2;locus_tag=AD39_RS15815;product=biofilm-dependent modulation protein;protein_id=WP_000495766.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 25466 25897 . + . ID=gene-AD39_RS15810;Name=osmC;gbkey=Gene;gene=osmC;gene_biotype=protein_coding;locus_tag=AD39_RS15810;old_locus_tag=AD39_1634 NZ_JJLH01000022.1 Protein Homology CDS 25466 25897 . + 0 ID=cds-WP_000152305.1;Parent=gene-AD39_RS15810;Dbxref=GenBank:WP_000152305.1;Name=WP_000152305.1;gbkey=CDS;gene=osmC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415999.1;locus_tag=AD39_RS15810;product=peroxiredoxin OsmC;protein_id=WP_000152305.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 25953 26879 . - . ID=gene-AD39_RS15805;Name=ddpF;gbkey=Gene;gene=ddpF;gene_biotype=protein_coding;locus_tag=AD39_RS15805;old_locus_tag=AD39_1635 NZ_JJLH01000022.1 Protein Homology CDS 25953 26879 . - 0 ID=cds-WP_000072429.1;Parent=gene-AD39_RS15805;Dbxref=GenBank:WP_000072429.1;Name=WP_000072429.1;Ontology_term=GO:0015833,GO:0005524,GO:0015440,GO:0009898,GO:0043190;gbkey=CDS;gene=ddpF;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type peptide transporter activity|0015440||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416000.1;locus_tag=AD39_RS15805;product=oligopeptide/dipeptide ABC transporter ATP-binding protein;protein_id=WP_000072429.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 26872 27858 . - . ID=gene-AD39_RS15800;Name=ddpD;gbkey=Gene;gene=ddpD;gene_biotype=protein_coding;locus_tag=AD39_RS15800;old_locus_tag=AD39_1636 NZ_JJLH01000022.1 Protein Homology CDS 26872 27858 . - 0 ID=cds-WP_000193566.1;Parent=gene-AD39_RS15800;Dbxref=GenBank:WP_000193566.1;Name=WP_000193566.1;Ontology_term=GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;gene=ddpD;go_function=ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416001.1;locus_tag=AD39_RS15800;product=ABC transporter ATP-binding protein;protein_id=WP_000193566.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 27855 28751 . - . ID=gene-AD39_RS15795;Name=ddpC;gbkey=Gene;gene=ddpC;gene_biotype=protein_coding;locus_tag=AD39_RS15795;old_locus_tag=AD39_1637 NZ_JJLH01000022.1 Protein Homology CDS 27855 28751 . - 0 ID=cds-WP_000979608.1;Parent=gene-AD39_RS15795;Dbxref=GenBank:WP_000979608.1;Name=WP_000979608.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=ddpC;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310116.1;locus_tag=AD39_RS15795;product=D%2CD-dipeptide ABC transporter permease;protein_id=WP_000979608.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 28748 29770 . - . ID=gene-AD39_RS15790;Name=ddpB;gbkey=Gene;gene=ddpB;gene_biotype=protein_coding;locus_tag=AD39_RS15790;old_locus_tag=AD39_1638 NZ_JJLH01000022.1 Protein Homology CDS 28748 29770 . - 0 ID=cds-WP_032287543.1;Parent=gene-AD39_RS15790;Dbxref=GenBank:WP_032287543.1;Name=WP_032287543.1;Ontology_term=GO:0055085;gbkey=CDS;gene=ddpB;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416003.1;locus_tag=AD39_RS15790;product=ABC transporter permease;protein_id=WP_032287543.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 29772 31322 . - . ID=gene-AD39_RS15785;Name=ddpA;gbkey=Gene;gene=ddpA;gene_biotype=protein_coding;locus_tag=AD39_RS15785;old_locus_tag=AD39_1639 NZ_JJLH01000022.1 Protein Homology CDS 29772 31322 . - 0 ID=cds-WP_001402244.1;Parent=gene-AD39_RS15785;Dbxref=GenBank:WP_001402244.1;Name=WP_001402244.1;Ontology_term=GO:0005524,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;gene=ddpA;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310118.1;locus_tag=AD39_RS15785;product=ABC transporter substrate-binding protein;protein_id=WP_001402244.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 31336 31917 . - . ID=gene-AD39_RS15780;Name=ddpX;gbkey=Gene;gene=ddpX;gene_biotype=protein_coding;locus_tag=AD39_RS15780;old_locus_tag=AD39_1640 NZ_JJLH01000022.1 Protein Homology CDS 31336 31917 . - 0 ID=cds-WP_001532773.1;Parent=gene-AD39_RS15780;Dbxref=GenBank:WP_001532773.1;Name=WP_001532773.1;Ontology_term=GO:0006508,GO:0016805;gbkey=CDS;gene=ddpX;go_function=dipeptidase activity|0016805||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310119.1;locus_tag=AD39_RS15780;product=D-alanyl-D-alanine dipeptidase;protein_id=WP_001532773.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 32175 34574 . - . ID=gene-AD39_RS15775;Name=dosP;gbkey=Gene;gene=dosP;gene_biotype=protein_coding;gene_synonym=pdeO;locus_tag=AD39_RS15775;old_locus_tag=AD39_1641 NZ_JJLH01000022.1 Protein Homology CDS 32175 34574 . - 0 ID=cds-WP_021578528.1;Parent=gene-AD39_RS15775;Dbxref=GenBank:WP_021578528.1;Name=WP_021578528.1;gbkey=CDS;gene=dosP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416006.4;locus_tag=AD39_RS15775;product=oxygen-sensing cyclic-di-GMP phosphodiesterase DosP;protein_id=WP_021578528.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 34599 35981 . - . ID=gene-AD39_RS0124055;Name=dosC;gbkey=Gene;gene=dosC;gene_biotype=protein_coding;locus_tag=AD39_RS0124055;old_locus_tag=AD39_1642 NZ_JJLH01000022.1 Protein Homology CDS 34599 35981 . - 0 ID=cds-WP_000426265.1;Parent=gene-AD39_RS0124055;Dbxref=GenBank:WP_000426265.1;Name=WP_000426265.1;gbkey=CDS;gene=dosC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310122.1;locus_tag=AD39_RS0124055;product=diguanylate cyclase DosC;protein_id=WP_000426265.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 36353 37672 . - . ID=gene-AD39_RS15770;Name=digH;gbkey=Gene;gene=digH;gene_biotype=protein_coding;locus_tag=AD39_RS15770;old_locus_tag=AD39_1643 NZ_JJLH01000022.1 Protein Homology CDS 36353 37672 . - 0 ID=cds-WP_000350404.1;Parent=gene-AD39_RS15770;Dbxref=GenBank:WP_000350404.1;Name=WP_000350404.1;gbkey=CDS;gene=digH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310123.1;locus_tag=AD39_RS15770;product=family 10 glycosylhydrolase;protein_id=WP_000350404.1;transl_table=11 NZ_JJLH01000022.1 RefSeq gene 37803 39338 . - . ID=gene-AD39_RS15765;Name=gadC;gbkey=Gene;gene=gadC;gene_biotype=protein_coding;locus_tag=AD39_RS15765;old_locus_tag=AD39_1644 NZ_JJLH01000022.1 Protein Homology CDS 37803 39338 . - 0 ID=cds-WP_000246019.1;Parent=gene-AD39_RS15765;Dbxref=GenBank:WP_000246019.1;Name=WP_000246019.1;gbkey=CDS;gene=gadC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416009.1;locus_tag=AD39_RS15765;product=acid resistance gamma-aminobutyrate antiporter GadC;protein_id=WP_000246019.1;transl_table=11 NZ_JJLH01000022.1 RefSeq pseudogene 39494 40601 . - . ID=gene-AD39_RS0124060;Name=AD39_RS0124060;end_range=40601,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0124060;partial=true;pseudo=true NZ_JJLH01000022.1 Protein Homology CDS 39494 40601 . - 0 ID=cds-AD39_RS0124060;Parent=gene-AD39_RS0124060;Note=frameshifted%3B incomplete%3B missing N-terminus;Ontology_term=GO:0006540,GO:0004351,GO:0030170;end_range=40601,.;gbkey=CDS;go_function=glutamate decarboxylase activity|0004351||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=gamma-aminobutyrate shunt|0006540||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310125.1;locus_tag=AD39_RS0124060;partial=true;product=glutamate decarboxylase;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000023.1 1 27065 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000023.1 RefSeq region 1 27065 . + . ID=NZ_JJLH01000023.1:1..27065;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000023.1 RefSeq gene 1 1315 . - . ID=gene-AD39_RS26810;Name=AD39_RS26810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS26810;partial=true;start_range=.,1 NZ_JJLH01000023.1 Protein Homology CDS 1 1315 . - 0 ID=cds-WP_187439598.1;Parent=gene-AD39_RS26810;Dbxref=GenBank:WP_187439598.1;Name=WP_187439598.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415890.2;locus_tag=AD39_RS26810;partial=true;product=prophage tail fiber N-terminal domain-containing protein;protein_id=WP_187439598.1;start_range=.,1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 1380 1979 . - . ID=gene-AD39_RS15750;Name=AD39_RS15750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15750;old_locus_tag=AD39_1650 NZ_JJLH01000023.1 Protein Homology CDS 1380 1979 . - 0 ID=cds-WP_001233076.1;Parent=gene-AD39_RS15750;Dbxref=GenBank:WP_001233076.1;Name=WP_001233076.1;Ontology_term=GO:0044384;gbkey=CDS;go_component=host outer membrane|0044384||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309676.1;locus_tag=AD39_RS15750;product=Ail/Lom family outer membrane beta-barrel protein;protein_id=WP_001233076.1;transl_table=11 NZ_JJLH01000023.1 RefSeq pseudogene 2050 5518 . - . ID=gene-AD39_RS0124065;Name=gpJ;gbkey=Gene;gene=gpJ;gene_biotype=pseudogene;locus_tag=AD39_RS0124065;old_locus_tag=AD39_1653;pseudo=true NZ_JJLH01000023.1 Protein Homology CDS 2050 5518 . - 0 ID=cds-AD39_RS0124065;Parent=gene-AD39_RS0124065;Note=frameshifted;gbkey=CDS;gene=gpJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001535875.1;locus_tag=AD39_RS0124065;product=phage attachment tail tip protein J;pseudo=true;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 5579 6226 . - . ID=gene-AD39_RS0124070;Name=AD39_RS0124070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124070;old_locus_tag=AD39_1654 NZ_JJLH01000023.1 Protein Homology CDS 5579 6226 . - 0 ID=cds-WP_032283758.1;Parent=gene-AD39_RS0124070;Dbxref=GenBank:WP_032283758.1;Name=WP_032283758.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461526.1;locus_tag=AD39_RS0124070;product=tail assembly protein;protein_id=WP_032283758.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 6124 6867 . - . ID=gene-AD39_RS15745;Name=AD39_RS15745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15745;old_locus_tag=AD39_1655 NZ_JJLH01000023.1 Protein Homology CDS 6124 6867 . - 0 ID=cds-WP_000194750.1;Parent=gene-AD39_RS15745;Dbxref=GenBank:WP_000194750.1;Name=WP_000194750.1;Ontology_term=GO:0006508,GO:0008234,GO:0008235,GO:0008270;gbkey=CDS;go_function=cysteine-type peptidase activity|0008234||IEA,metalloexopeptidase activity|0008235||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001396591.1;locus_tag=AD39_RS15745;product=C40 family peptidase;protein_id=WP_000194750.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 6873 7571 . - . ID=gene-AD39_RS15740;Name=AD39_RS15740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15740;old_locus_tag=AD39_1656 NZ_JJLH01000023.1 Protein Homology CDS 6873 7571 . - 0 ID=cds-WP_032266453.1;Parent=gene-AD39_RS15740;Dbxref=GenBank:WP_032266453.1;Name=WP_032266453.1;Ontology_term=GO:0046718,GO:0051536,GO:0030430;gbkey=CDS;go_component=host cell cytoplasm|0030430||IEA;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=symbiont entry into host cell|0046718||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309672.1;locus_tag=AD39_RS15740;product=phage minor tail protein L;protein_id=WP_032266453.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 7571 7900 . - . ID=gene-AD39_RS15735;Name=AD39_RS15735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15735;old_locus_tag=AD39_1657 NZ_JJLH01000023.1 Protein Homology CDS 7571 7900 . - 0 ID=cds-WP_000847402.1;Parent=gene-AD39_RS15735;Dbxref=GenBank:WP_000847402.1;Name=WP_000847402.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309671.1;locus_tag=AD39_RS15735;product=phage tail protein;protein_id=WP_000847402.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 7897 10476 . - . ID=gene-AD39_RS15730;Name=AD39_RS15730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15730;old_locus_tag=AD39_1658 NZ_JJLH01000023.1 Protein Homology CDS 7897 10476 . - 0 ID=cds-WP_032287547.1;Parent=gene-AD39_RS15730;Dbxref=GenBank:WP_032287547.1;Name=WP_032287547.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309141.1;locus_tag=AD39_RS15730;product=phage tail tape measure protein;protein_id=WP_032287547.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 10469 10903 . - . ID=gene-AD39_RS15725;Name=AD39_RS15725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15725;old_locus_tag=AD39_1659 NZ_JJLH01000023.1 Protein Homology CDS 10469 10903 . - 0 ID=cds-WP_000459457.1;Parent=gene-AD39_RS15725;Dbxref=GenBank:WP_000459457.1;Name=WP_000459457.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309669.1;locus_tag=AD39_RS15725;product=phage tail assembly protein T;protein_id=WP_000459457.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 10885 11307 . - . ID=gene-AD39_RS15720;Name=gpG;gbkey=Gene;gene=gpG;gene_biotype=protein_coding;locus_tag=AD39_RS15720;old_locus_tag=AD39_1660 NZ_JJLH01000023.1 Protein Homology CDS 10885 11307 . - 0 ID=cds-WP_000479193.1;Parent=gene-AD39_RS15720;Dbxref=GenBank:WP_000479193.1;Name=WP_000479193.1;gbkey=CDS;gene=gpG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309668.1;locus_tag=AD39_RS15720;product=phage tail assembly chaperone G;protein_id=WP_000479193.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 11323 12063 . - . ID=gene-AD39_RS15715;Name=AD39_RS15715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15715;old_locus_tag=AD39_1661 NZ_JJLH01000023.1 Protein Homology CDS 11323 12063 . - 0 ID=cds-WP_001390117.1;Parent=gene-AD39_RS15715;Dbxref=GenBank:WP_001390117.1;Name=WP_001390117.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309667.1;locus_tag=AD39_RS15715;product=phage tail protein;protein_id=WP_001390117.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 12071 12466 . - . ID=gene-AD39_RS15710;Name=AD39_RS15710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15710;old_locus_tag=AD39_1662 NZ_JJLH01000023.1 Protein Homology CDS 12071 12466 . - 0 ID=cds-WP_000683129.1;Parent=gene-AD39_RS15710;Dbxref=GenBank:WP_000683129.1;Name=WP_000683129.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309666.1;locus_tag=AD39_RS15710;product=phage minor tail U family protein;protein_id=WP_000683129.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 12463 13041 . - . ID=gene-AD39_RS15705;Name=AD39_RS15705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15705;old_locus_tag=AD39_1663 NZ_JJLH01000023.1 Protein Homology CDS 12463 13041 . - 0 ID=cds-WP_000975089.1;Parent=gene-AD39_RS15705;Dbxref=GenBank:WP_000975089.1;Name=WP_000975089.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309665.1;locus_tag=AD39_RS15705;product=phage tail protein;protein_id=WP_000975089.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 13053 13406 . - . ID=gene-AD39_RS15700;Name=AD39_RS15700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15700;old_locus_tag=AD39_1664 NZ_JJLH01000023.1 Protein Homology CDS 13053 13406 . - 0 ID=cds-WP_000785282.1;Parent=gene-AD39_RS15700;Dbxref=GenBank:WP_000785282.1;Name=WP_000785282.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309664.1;locus_tag=AD39_RS15700;product=head-tail joining protein;protein_id=WP_000785282.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 13418 13813 . - . ID=gene-AD39_RS15695;Name=AD39_RS15695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15695;old_locus_tag=AD39_1665 NZ_JJLH01000023.1 Protein Homology CDS 13418 13813 . - 0 ID=cds-WP_000158875.1;Parent=gene-AD39_RS15695;Dbxref=GenBank:WP_000158875.1;Name=WP_000158875.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309663.1;locus_tag=AD39_RS15695;product=DNA-packaging protein FI;protein_id=WP_000158875.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 13855 14880 . - . ID=gene-AD39_RS15690;Name=AD39_RS15690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15690;old_locus_tag=AD39_1666 NZ_JJLH01000023.1 Protein Homology CDS 13855 14880 . - 0 ID=cds-WP_000063221.1;Parent=gene-AD39_RS15690;Dbxref=GenBank:WP_000063221.1;Name=WP_000063221.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309662.1;locus_tag=AD39_RS15690;product=major capsid protein;protein_id=WP_000063221.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 14936 15268 . - . ID=gene-AD39_RS15685;Name=AD39_RS15685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15685;old_locus_tag=AD39_1667 NZ_JJLH01000023.1 Protein Homology CDS 14936 15268 . - 0 ID=cds-WP_032283087.1;Parent=gene-AD39_RS15685;Dbxref=GenBank:WP_032283087.1;Name=WP_032283087.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309661.1;locus_tag=AD39_RS15685;product=head decoration protein;protein_id=WP_032283087.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 15278 16597 . - . ID=gene-AD39_RS15680;Name=AD39_RS15680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15680;old_locus_tag=AD39_1668 NZ_JJLH01000023.1 Protein Homology CDS 15278 16597 . - 0 ID=cds-WP_032287548.1;Parent=gene-AD39_RS15680;Dbxref=GenBank:WP_032287548.1;Name=WP_032287548.1;Ontology_term=GO:0006508,GO:0008233,GO:0008236;gbkey=CDS;go_function=peptidase activity|0008233||IEA,serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309660.1;locus_tag=AD39_RS15680;product=S49 family peptidase;protein_id=WP_032287548.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 16578 18179 . - . ID=gene-AD39_RS15675;Name=AD39_RS15675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15675;old_locus_tag=AD39_1669 NZ_JJLH01000023.1 Protein Homology CDS 16578 18179 . - 0 ID=cds-WP_001479157.1;Parent=gene-AD39_RS15675;Dbxref=GenBank:WP_001479157.1;Name=WP_001479157.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309659.1;locus_tag=AD39_RS15675;product=phage portal protein;protein_id=WP_001479157.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 18176 18382 . - . ID=gene-AD39_RS15670;Name=AD39_RS15670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15670;old_locus_tag=AD39_1670 NZ_JJLH01000023.1 Protein Homology CDS 18176 18382 . - 0 ID=cds-WP_000198149.1;Parent=gene-AD39_RS15670;Dbxref=GenBank:WP_000198149.1;Name=WP_000198149.1;Ontology_term=GO:0019058;gbkey=CDS;go_process=viral life cycle|0019058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309658.1;locus_tag=AD39_RS15670;product=phage head-tail joining protein;protein_id=WP_000198149.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 18379 20304 . - . ID=gene-AD39_RS15665;Name=AD39_RS15665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15665;old_locus_tag=AD39_1671 NZ_JJLH01000023.1 Protein Homology CDS 18379 20304 . - 0 ID=cds-WP_001027268.1;Parent=gene-AD39_RS15665;Dbxref=GenBank:WP_001027268.1;Name=WP_001027268.1;Ontology_term=GO:0004519,GO:0005524,GO:0016887;gbkey=CDS;go_function=endonuclease activity|0004519||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309657.1;locus_tag=AD39_RS15665;product=phage terminase large subunit family protein;protein_id=WP_001027268.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 20279 20824 . - . ID=gene-AD39_RS15660;Name=AD39_RS15660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15660;old_locus_tag=AD39_1672 NZ_JJLH01000023.1 Protein Homology CDS 20279 20824 . - 0 ID=cds-WP_000453576.1;Parent=gene-AD39_RS15660;Dbxref=GenBank:WP_000453576.1;Name=WP_000453576.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415092.1;locus_tag=AD39_RS15660;product=DNA-packaging protein;protein_id=WP_000453576.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 21213 21446 . + . ID=gene-AD39_RS0124085;Name=AD39_RS0124085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124085;old_locus_tag=AD39_1674 NZ_JJLH01000023.1 Protein Homology CDS 21213 21446 . + 0 ID=cds-WP_001663509.1;Parent=gene-AD39_RS0124085;Dbxref=GenBank:WP_001663509.1;Name=WP_001663509.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588454.1;locus_tag=AD39_RS0124085;product=YlcI/YnfO family protein;protein_id=WP_001663509.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 21505 21915 . + . ID=gene-AD39_RS0124090;Name=AD39_RS0124090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124090 NZ_JJLH01000023.1 Protein Homology CDS 21505 21915 . + 0 ID=cds-WP_001355838.1;Parent=gene-AD39_RS0124090;Dbxref=GenBank:WP_001355838.1;Name=WP_001355838.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001619138.1;locus_tag=AD39_RS0124090;product=DUF1398 domain-containing protein;protein_id=WP_001355838.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 22218 22742 . - . ID=gene-AD39_RS15655;Name=AD39_RS15655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15655;old_locus_tag=AD39_1675 NZ_JJLH01000023.1 Protein Homology CDS 22218 22742 . - 0 ID=cds-WP_001059339.1;Parent=gene-AD39_RS15655;Dbxref=GenBank:WP_001059339.1;Name=WP_001059339.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001059339.1;locus_tag=AD39_RS15655;product=Rha family transcriptional regulator;protein_id=WP_001059339.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 22945 23097 . - . ID=gene-AD39_RS15650;Name=AD39_RS15650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15650;old_locus_tag=AD39_1676 NZ_JJLH01000023.1 Protein Homology CDS 22945 23097 . - 0 ID=cds-WP_001139682.1;Parent=gene-AD39_RS15650;Dbxref=GenBank:WP_001139682.1;Name=WP_001139682.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308849.1;locus_tag=AD39_RS15650;product=hypothetical protein;protein_id=WP_001139682.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 23085 23552 . - . ID=gene-AD39_RS29410;Name=AD39_RS29410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29410;old_locus_tag=AD39_1677 NZ_JJLH01000023.1 Protein Homology CDS 23085 23552 . - 0 ID=cds-WP_001398804.1;Parent=gene-AD39_RS29410;Dbxref=GenBank:WP_001398804.1;Name=WP_001398804.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308847.1;locus_tag=AD39_RS29410;product=lysis protein;protein_id=WP_001398804.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 23549 24046 . - . ID=gene-AD39_RS15640;Name=rrrD;gbkey=Gene;gene=rrrD;gene_biotype=protein_coding;locus_tag=AD39_RS15640;old_locus_tag=AD39_1678 NZ_JJLH01000023.1 Protein Homology CDS 23549 24046 . - 0 ID=cds-WP_001135277.1;Parent=gene-AD39_RS15640;Dbxref=GenBank:WP_001135277.1;Name=WP_001135277.1;gbkey=CDS;gene=rrrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415087.1;locus_tag=AD39_RS15640;product=lysozyme RrrD;protein_id=WP_001135277.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 24046 24261 . - . ID=gene-AD39_RS15635;Name=essD;gbkey=Gene;gene=essD;gene_biotype=protein_coding;locus_tag=AD39_RS15635;old_locus_tag=AD39_1679 NZ_JJLH01000023.1 Protein Homology CDS 24046 24261 . - 0 ID=cds-WP_000839596.1;Parent=gene-AD39_RS15635;Dbxref=GenBank:WP_000839596.1;Name=WP_000839596.1;gbkey=CDS;gene=essD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415086.1;locus_tag=AD39_RS15635;product=phage lysis protein EssD;protein_id=WP_000839596.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 24850 25932 . + . ID=gene-AD39_RS15630;Name=ompC;gbkey=Gene;gene=ompC;gene_biotype=protein_coding;locus_tag=AD39_RS15630;old_locus_tag=AD39_1680 NZ_JJLH01000023.1 Protein Homology CDS 24850 25932 . + 0 ID=cds-WP_000737263.1;Parent=gene-AD39_RS15630;Dbxref=GenBank:WP_000737263.1;Name=WP_000737263.1;Ontology_term=GO:0034220,GO:0015288;gbkey=CDS;gene=ompC;go_function=porin activity|0015288||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707819.1;locus_tag=AD39_RS15630;product=porin OmpC;protein_id=WP_000737263.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 26121 26504 . - . ID=gene-AD39_RS15625;Name=quuD;gbkey=Gene;gene=quuD;gene_biotype=protein_coding;locus_tag=AD39_RS15625;old_locus_tag=AD39_1681 NZ_JJLH01000023.1 Protein Homology CDS 26121 26504 . - 0 ID=cds-WP_001204791.1-2;Parent=gene-AD39_RS15625;Dbxref=GenBank:WP_001204791.1;Name=WP_001204791.1;gbkey=CDS;gene=quuD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415083.1;locus_tag=AD39_RS15625;product=antitermination protein QuuD;protein_id=WP_001204791.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 26590 26730 . - . ID=gene-AD39_RS15620;Name=AD39_RS15620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15620;old_locus_tag=AD39_1682 NZ_JJLH01000023.1 Protein Homology CDS 26590 26730 . - 0 ID=cds-WP_000971068.1-2;Parent=gene-AD39_RS15620;Dbxref=GenBank:WP_000971068.1;Name=WP_000971068.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588439.1;locus_tag=AD39_RS15620;product=YlcG family protein;protein_id=WP_000971068.1;transl_table=11 NZ_JJLH01000023.1 RefSeq gene 26727 27065 . - . ID=gene-AD39_RS0124100;Name=rusA;end_range=27065,.;gbkey=Gene;gene=rusA;gene_biotype=protein_coding;locus_tag=AD39_RS0124100;old_locus_tag=AD39_1683;partial=true NZ_JJLH01000023.1 Protein Homology CDS 26727 27065 . - 0 ID=cds-WP_024217423.1;Parent=gene-AD39_RS0124100;Dbxref=GenBank:WP_024217423.1;Name=WP_024217423.1;Ontology_term=GO:0006281,GO:0006310,GO:0008821;end_range=27065,.;gbkey=CDS;gene=rusA;go_function=crossover junction DNA endonuclease activity|0008821||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415082.1;locus_tag=AD39_RS0124100;partial=true;product=crossover junction endodeoxyribonuclease RusA;protein_id=WP_024217423.1;transl_table=11 ##sequence-region NZ_JJLH01000024.1 1 5521 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000024.1 RefSeq region 1 5521 . + . ID=NZ_JJLH01000024.1:1..5521;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000024.1 RefSeq gene 1 987 . - . ID=gene-AD39_RS15615;Name=AD39_RS15615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15615;old_locus_tag=AD39_1684;partial=true;start_range=.,1 NZ_JJLH01000024.1 Protein Homology CDS 1 987 . - 0 ID=cds-WP_032287549.1;Parent=gene-AD39_RS15615;Dbxref=GenBank:WP_032287549.1;Name=WP_032287549.1;Ontology_term=GO:0016887;gbkey=CDS;go_function=ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000622379.1;locus_tag=AD39_RS15615;partial=true;product=phage terminase large subunit family protein;protein_id=WP_032287549.1;start_range=.,1;transl_table=11 NZ_JJLH01000024.1 RefSeq gene 959 1507 . - . ID=gene-AD39_RS0124105;Name=AD39_RS0124105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124105;old_locus_tag=AD39_1685 NZ_JJLH01000024.1 Protein Homology CDS 959 1507 . - 0 ID=cds-WP_000867569.1;Parent=gene-AD39_RS0124105;Dbxref=GenBank:WP_000867569.1;Name=WP_000867569.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000867575.1;locus_tag=AD39_RS0124105;product=terminase small subunit;protein_id=WP_000867569.1;transl_table=11 NZ_JJLH01000024.1 RefSeq gene 1919 2986 . + . ID=gene-AD39_RS15610;Name=AD39_RS15610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15610;old_locus_tag=AD39_1686 NZ_JJLH01000024.1 Protein Homology CDS 1919 2986 . + 0 ID=cds-WP_000077906.1;Parent=gene-AD39_RS15610;Dbxref=GenBank:WP_000077906.1;Name=WP_000077906.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001383880.1;locus_tag=AD39_RS15610;product=beta family protein;protein_id=WP_000077906.1;transl_table=11 NZ_JJLH01000024.1 RefSeq gene 2928 3548 . - . ID=gene-AD39_RS0124110;Name=AD39_RS0124110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124110 NZ_JJLH01000024.1 Protein Homology CDS 2928 3548 . - 0 ID=cds-WP_000654791.1;Parent=gene-AD39_RS0124110;Dbxref=GenBank:WP_000654791.1;Name=WP_000654791.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000654791.1;locus_tag=AD39_RS0124110;product=sce7726 family protein;protein_id=WP_000654791.1;transl_table=11 NZ_JJLH01000024.1 RefSeq gene 3965 4423 . - . ID=gene-AD39_RS15605;Name=AD39_RS15605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15605;old_locus_tag=AD39_1687 NZ_JJLH01000024.1 Protein Homology CDS 3965 4423 . - 0 ID=cds-WP_000091923.1;Parent=gene-AD39_RS15605;Dbxref=GenBank:WP_000091923.1;Name=WP_000091923.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009453323.1;locus_tag=AD39_RS15605;product=lysis protein;protein_id=WP_000091923.1;transl_table=11 NZ_JJLH01000024.1 RefSeq gene 4420 4953 . - . ID=gene-AD39_RS15600;Name=AD39_RS15600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15600;old_locus_tag=AD39_1688 NZ_JJLH01000024.1 Protein Homology CDS 4420 4953 . - 0 ID=cds-WP_001274715.1;Parent=gene-AD39_RS15600;Dbxref=GenBank:WP_001274715.1;Name=WP_001274715.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706619.3;locus_tag=AD39_RS15600;product=lysozyme;protein_id=WP_001274715.1;transl_table=11 NZ_JJLH01000024.1 RefSeq gene 5009 5323 . - . ID=gene-AD39_RS15595;Name=AD39_RS15595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15595;old_locus_tag=AD39_1689 NZ_JJLH01000024.1 Protein Homology CDS 5009 5323 . - 0 ID=cds-WP_000193273.1;Parent=gene-AD39_RS15595;Dbxref=GenBank:WP_000193273.1;Name=WP_000193273.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000192453.1;locus_tag=AD39_RS15595;product=YdfR family protein;protein_id=WP_000193273.1;transl_table=11 NZ_JJLH01000024.1 RefSeq gene 5328 5521 . - . ID=gene-AD39_RS0124115;Name=AD39_RS0124115;end_range=5521,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124115;partial=true NZ_JJLH01000024.1 Protein Homology CDS 5328 5521 . - 2 ID=cds-WP_000316961.1;Parent=gene-AD39_RS0124115;Dbxref=GenBank:WP_000316961.1;Name=WP_000316961.1;Ontology_term=GO:0140911,GO:0016020;end_range=5521,.;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=pore-forming activity|0140911||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309239.1;locus_tag=AD39_RS0124115;partial=true;product=class II holin family protein;protein_id=WP_000316961.1;transl_table=11 ##sequence-region NZ_JJLH01000025.1 1 5796 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000025.1 RefSeq region 1 5796 . + . ID=NZ_JJLH01000025.1:1..5796;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000025.1 RefSeq gene 1 987 . - . ID=gene-AD39_RS15590;Name=AD39_RS15590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15590;old_locus_tag=AD39_1690;partial=true;start_range=.,1 NZ_JJLH01000025.1 Protein Homology CDS 1 987 . - 0 ID=cds-WP_032287549.1-2;Parent=gene-AD39_RS15590;Dbxref=GenBank:WP_032287549.1;Name=WP_032287549.1;Ontology_term=GO:0016887;gbkey=CDS;go_function=ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000622379.1;locus_tag=AD39_RS15590;partial=true;product=phage terminase large subunit family protein;protein_id=WP_032287549.1;start_range=.,1;transl_table=11 NZ_JJLH01000025.1 RefSeq gene 959 1507 . - . ID=gene-AD39_RS15585;Name=AD39_RS15585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15585;old_locus_tag=AD39_1691 NZ_JJLH01000025.1 Protein Homology CDS 959 1507 . - 0 ID=cds-WP_000867575.1;Parent=gene-AD39_RS15585;Dbxref=GenBank:WP_000867575.1;Name=WP_000867575.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000867575.1;locus_tag=AD39_RS15585;product=terminase small subunit;protein_id=WP_000867575.1;transl_table=11 NZ_JJLH01000025.1 RefSeq gene 1948 2415 . - . ID=gene-AD39_RS30150;Name=AD39_RS30150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30150;old_locus_tag=AD39_1692 NZ_JJLH01000025.1 Protein Homology CDS 1948 2415 . - 0 ID=cds-WP_001082562.1;Parent=gene-AD39_RS30150;Dbxref=GenBank:WP_001082562.1;Name=WP_001082562.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001082562.1;locus_tag=AD39_RS30150;product=lysis protein;protein_id=WP_001082562.1;transl_table=11 NZ_JJLH01000025.1 RefSeq gene 2417 2554 . - . ID=gene-AD39_RS29415;Name=AD39_RS29415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29415;old_locus_tag=AD39_1693 NZ_JJLH01000025.1 Protein Homology CDS 2417 2554 . - 0 ID=cds-WP_000459345.1;Parent=gene-AD39_RS29415;Dbxref=GenBank:WP_000459345.1;Name=WP_000459345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000459350.1;locus_tag=AD39_RS29415;product=hypothetical protein;protein_id=WP_000459345.1;transl_table=11 NZ_JJLH01000025.1 RefSeq gene 2714 3247 . - . ID=gene-AD39_RS15575;Name=AD39_RS15575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15575;old_locus_tag=AD39_1694 NZ_JJLH01000025.1 Protein Homology CDS 2714 3247 . - 0 ID=cds-WP_032266315.1;Parent=gene-AD39_RS15575;Dbxref=GenBank:WP_032266315.1;Name=WP_032266315.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309123.1;locus_tag=AD39_RS15575;product=lysozyme;protein_id=WP_032266315.1;transl_table=11 NZ_JJLH01000025.1 RefSeq gene 3311 3661 . - . ID=gene-AD39_RS15570;Name=AD39_RS15570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15570;old_locus_tag=AD39_1695 NZ_JJLH01000025.1 Protein Homology CDS 3311 3661 . - 0 ID=cds-WP_032266967.1;Parent=gene-AD39_RS15570;Dbxref=GenBank:WP_032266967.1;Name=WP_032266967.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000193290.1;locus_tag=AD39_RS15570;product=YdfR family protein;protein_id=WP_032266967.1;transl_table=11 NZ_JJLH01000025.1 RefSeq gene 3666 3881 . - . ID=gene-AD39_RS15565;Name=AD39_RS15565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15565;old_locus_tag=AD39_1696 NZ_JJLH01000025.1 Protein Homology CDS 3666 3881 . - 0 ID=cds-WP_000284510.1;Parent=gene-AD39_RS15565;Dbxref=GenBank:WP_000284510.1;Name=WP_000284510.1;Ontology_term=GO:0140911,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=pore-forming activity|0140911||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309239.1;locus_tag=AD39_RS15565;product=class II holin family protein;protein_id=WP_000284510.1;transl_table=11 NZ_JJLH01000025.1 RefSeq gene 4032 5796 . - . ID=gene-AD39_RS15560;Name=AD39_RS15560;end_range=5796,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15560;old_locus_tag=AD39_1697;partial=true NZ_JJLH01000025.1 Protein Homology CDS 4032 5796 . - 1 ID=cds-WP_032287550.1;Parent=gene-AD39_RS15560;Dbxref=GenBank:WP_032287550.1;Name=WP_032287550.1;end_range=5796,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309808.1;locus_tag=AD39_RS15560;partial=true;product=DUF6645 domain-containing protein;protein_id=WP_032287550.1;transl_table=11 ##sequence-region NZ_JJLH01000026.1 1 52194 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000026.1 RefSeq region 1 52194 . + . ID=NZ_JJLH01000026.1:1..52194;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000026.1 RefSeq gene 1 680 . - . ID=gene-AD39_RS28375;Name=AD39_RS28375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28375;old_locus_tag=AD39_1699;partial=true;start_range=.,1 NZ_JJLH01000026.1 Protein Homology CDS 190 680 . - 0 ID=cds-WP_248785917.1;Parent=gene-AD39_RS28375;Dbxref=GenBank:WP_248785917.1;Name=WP_248785917.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558153.1;locus_tag=AD39_RS28375;partial=true;product=IS1 family transposase;protein_id=WP_248785917.1;transl_table=11 NZ_JJLH01000026.1 Protein Homology CDS 1 191 . - 1 ID=cds-WP_248785917.1;Parent=gene-AD39_RS28375;Dbxref=GenBank:WP_248785917.1;Name=WP_248785917.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558153.1;locus_tag=AD39_RS28375;partial=true;product=IS1 family transposase;protein_id=WP_248785917.1;start_range=.,1;transl_table=11 NZ_JJLH01000026.1 RefSeq pseudogene 736 818 . - . ID=gene-AD39_RS30155;Name=AD39_RS30155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30155;partial=true;pseudo=true;start_range=.,736 NZ_JJLH01000026.1 Protein Homology CDS 736 818 . - 0 ID=cds-AD39_RS30155;Parent=gene-AD39_RS30155;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000406625.1;locus_tag=AD39_RS30155;partial=true;product=CPBP family intramembrane glutamic endopeptidase;pseudo=true;start_range=.,736;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 918 1376 . - . ID=gene-AD39_RS15555;Name=AD39_RS15555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15555;old_locus_tag=AD39_1700 NZ_JJLH01000026.1 Protein Homology CDS 918 1376 . - 0 ID=cds-WP_001301456.1;Parent=gene-AD39_RS15555;Dbxref=GenBank:WP_001301456.1;Name=WP_001301456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309401.1;locus_tag=AD39_RS15555;product=hypothetical protein;protein_id=WP_001301456.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 1834 2343 . + . ID=gene-AD39_RS28380;Name=AD39_RS28380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28380 NZ_JJLH01000026.1 Protein Homology CDS 1834 2343 . + 0 ID=cds-WP_001167434.1;Parent=gene-AD39_RS28380;Dbxref=GenBank:WP_001167434.1;Name=WP_001167434.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309403.1;locus_tag=AD39_RS28380;product=hypothetical protein;protein_id=WP_001167434.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 2432 3055 . + . ID=gene-AD39_RS15550;Name=AD39_RS15550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15550;old_locus_tag=AD39_1703 NZ_JJLH01000026.1 Protein Homology CDS 2432 3055 . + 0 ID=cds-WP_001260386.1;Parent=gene-AD39_RS15550;Dbxref=GenBank:WP_001260386.1;Name=WP_001260386.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309404.1;locus_tag=AD39_RS15550;product=hypothetical protein;protein_id=WP_001260386.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 3151 3384 . + . ID=gene-AD39_RS15545;Name=AD39_RS15545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15545;old_locus_tag=AD39_1704 NZ_JJLH01000026.1 Protein Homology CDS 3151 3384 . + 0 ID=cds-WP_000124179.1;Parent=gene-AD39_RS15545;Dbxref=GenBank:WP_000124179.1;Name=WP_000124179.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309405.1;locus_tag=AD39_RS15545;product=hypothetical protein;protein_id=WP_000124179.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 3437 3628 . - . ID=gene-AD39_RS15540;Name=AD39_RS15540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15540;old_locus_tag=AD39_1705 NZ_JJLH01000026.1 Protein Homology CDS 3437 3628 . - 0 ID=cds-WP_001287881.1;Parent=gene-AD39_RS15540;Dbxref=GenBank:WP_001287881.1;Name=WP_001287881.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502604.1;locus_tag=AD39_RS15540;product=DUF4222 domain-containing protein;protein_id=WP_001287881.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 4050 4199 . + . ID=gene-AD39_RS29420;Name=AD39_RS29420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29420;old_locus_tag=AD39_1707 NZ_JJLH01000026.1 Protein Homology CDS 4050 4199 . + 0 ID=cds-WP_000590537.1;Parent=gene-AD39_RS29420;Dbxref=GenBank:WP_000590537.1;Name=WP_000590537.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000590537.1;locus_tag=AD39_RS29420;product=hypothetical protein;protein_id=WP_000590537.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 4303 5349 . + . ID=gene-AD39_RS15535;Name=AD39_RS15535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15535;old_locus_tag=AD39_1708 NZ_JJLH01000026.1 Protein Homology CDS 4303 5349 . + 0 ID=cds-WP_001335711.1;Parent=gene-AD39_RS15535;Dbxref=GenBank:WP_001335711.1;Name=WP_001335711.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309409.2;locus_tag=AD39_RS15535;product=POTRA domain-containing protein;protein_id=WP_001335711.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 5590 8271 . + . ID=gene-AD39_RS15530;Name=AD39_RS15530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15530;old_locus_tag=AD39_1709 NZ_JJLH01000026.1 Protein Homology CDS 5590 8271 . + 0 ID=cds-WP_187439312.1;Parent=gene-AD39_RS15530;Dbxref=GenBank:WP_187439312.1;Name=WP_187439312.1;Ontology_term=GO:0004386;gbkey=CDS;go_function=helicase activity|0004386||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001536548.1;locus_tag=AD39_RS15530;product=AAA domain-containing protein;protein_id=WP_187439312.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 8774 9520 . - . ID=gene-AD39_RS15525;Name=istB;gbkey=Gene;gene=istB;gene_biotype=protein_coding;locus_tag=AD39_RS15525;old_locus_tag=AD39_1711 NZ_JJLH01000026.1 Protein Homology CDS 8774 9520 . - 0 ID=cds-WP_001016257.1;Parent=gene-AD39_RS15525;Dbxref=GenBank:WP_001016257.1;Name=WP_001016257.1;gbkey=CDS;gene=istB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001514323.1;locus_tag=AD39_RS15525;product=IS21-like element ISEc12 family helper ATPase IstB;protein_id=WP_001016257.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 9535 11076 . - . ID=gene-AD39_RS15520;Name=istA;gbkey=Gene;gene=istA;gene_biotype=protein_coding;locus_tag=AD39_RS15520;old_locus_tag=AD39_1712 NZ_JJLH01000026.1 Protein Homology CDS 9535 11076 . - 0 ID=cds-WP_001298859.1;Parent=gene-AD39_RS15520;Dbxref=GenBank:WP_001298859.1;Name=WP_001298859.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;gene=istA;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001298859.1;locus_tag=AD39_RS15520;product=IS21-like element ISEc12 family transposase;protein_id=WP_001298859.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 11358 12590 . + . ID=gene-AD39_RS15515;Name=AD39_RS15515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15515;old_locus_tag=AD39_1713 NZ_JJLH01000026.1 Protein Homology CDS 11358 12590 . + 0 ID=cds-WP_001285507.1;Parent=gene-AD39_RS15515;Dbxref=GenBank:WP_001285507.1;Name=WP_001285507.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309413.1;locus_tag=AD39_RS15515;product=phosphoadenosine phosphosulfate reductase;protein_id=WP_001285507.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 12575 13213 . + . ID=gene-AD39_RS0124155;Name=AD39_RS0124155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124155;old_locus_tag=AD39_1714 NZ_JJLH01000026.1 Protein Homology CDS 12575 13213 . + 0 ID=cds-WP_000502842.1;Parent=gene-AD39_RS0124155;Dbxref=GenBank:WP_000502842.1;Name=WP_000502842.1;Ontology_term=GO:0071453,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=cellular response to oxygen levels|0071453||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309414.1;locus_tag=AD39_RS0124155;product=IbrB-like domain-containing protein;protein_id=WP_000502842.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 13292 13561 . + . ID=gene-AD39_RS15510;Name=AD39_RS15510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15510;old_locus_tag=AD39_1715 NZ_JJLH01000026.1 Protein Homology CDS 13292 13561 . + 0 ID=cds-WP_000226519.1;Parent=gene-AD39_RS15510;Dbxref=GenBank:WP_000226519.1;Name=WP_000226519.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309415.1;locus_tag=AD39_RS15510;product=PerC family transcriptional regulator;protein_id=WP_000226519.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 13582 14226 . + . ID=gene-AD39_RS15505;Name=AD39_RS15505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15505;old_locus_tag=AD39_1716 NZ_JJLH01000026.1 Protein Homology CDS 13582 14226 . + 0 ID=cds-WP_001333354.1;Parent=gene-AD39_RS15505;Dbxref=GenBank:WP_001333354.1;Name=WP_001333354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309416.1;locus_tag=AD39_RS15505;product=hypothetical protein;protein_id=WP_001333354.1;transl_table=11 NZ_JJLH01000026.1 RefSeq pseudogene 14542 14881 . + . ID=gene-AD39_RS15500;Name=AD39_RS15500;end_range=14881,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS15500;old_locus_tag=AD39_1717;partial=true;pseudo=true NZ_JJLH01000026.1 Protein Homology CDS 14542 14881 . + 0 ID=cds-AD39_RS15500;Parent=gene-AD39_RS15500;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=14881,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001347735.1;locus_tag=AD39_RS15500;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000026.1 RefSeq pseudogene 14924 15142 . - . ID=gene-AD39_RS15495;Name=AD39_RS15495;end_range=15142,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS15495;old_locus_tag=AD39_1718;partial=true;pseudo=true NZ_JJLH01000026.1 Protein Homology CDS 14924 15142 . - 0 ID=cds-AD39_RS15495;Parent=gene-AD39_RS15495;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0015074;end_range=15142,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612086.1;locus_tag=AD39_RS15495;partial=true;product=integrase core domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 15226 15651 . + . ID=gene-AD39_RS15490;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=protein_coding;locus_tag=AD39_RS15490;old_locus_tag=AD39_1719 NZ_JJLH01000026.1 Protein Homology CDS 15226 15651 . + 0 ID=cds-WP_000422761.1;Parent=gene-AD39_RS15490;Dbxref=GenBank:WP_000422761.1;Name=WP_000422761.1;gbkey=CDS;gene=tnpA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001373091.1;locus_tag=AD39_RS15490;product=IS66-like element accessory protein TnpA;protein_id=WP_000422761.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 15648 15938 . + . ID=gene-AD39_RS15485;Name=tnpB;gbkey=Gene;gene=tnpB;gene_biotype=protein_coding;locus_tag=AD39_RS15485;old_locus_tag=AD39_1720 NZ_JJLH01000026.1 Protein Homology CDS 15648 15938 . + 0 ID=cds-WP_000624715.1;Parent=gene-AD39_RS15485;Dbxref=GenBank:WP_000624715.1;Name=WP_000624715.1;Note=TnpB%2C as the term is used for proteins encoded by IS66 family insertion elements%2C is considered an accessory protein%2C since TnpC%2C encoded by a neighboring gene%2C is a DDE family transposase.;gbkey=CDS;gene=tnpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311895.1;locus_tag=AD39_RS15485;product=IS66 family insertion sequence element accessory protein TnpB;protein_id=WP_000624715.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 16190 16933 . - . ID=gene-AD39_RS15480;Name=AD39_RS15480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15480;old_locus_tag=AD39_1722 NZ_JJLH01000026.1 Protein Homology CDS 16190 16933 . - 0 ID=cds-WP_005067636.1;Parent=gene-AD39_RS15480;Dbxref=GenBank:WP_005067636.1;Name=WP_005067636.1;Ontology_term=GO:0003677,GO:0030552;gbkey=CDS;go_function=DNA binding|0003677||IEA,cAMP binding|0030552||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005067636.1;locus_tag=AD39_RS15480;product=Crp/Fnr family transcriptional regulator;protein_id=WP_005067636.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 16983 18350 . - . ID=gene-AD39_RS15475;Name=AD39_RS15475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15475;old_locus_tag=AD39_1723 NZ_JJLH01000026.1 Protein Homology CDS 16983 18350 . - 0 ID=cds-WP_032171718.1;Parent=gene-AD39_RS15475;Dbxref=GenBank:WP_032171718.1;Name=WP_032171718.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001139133.1;locus_tag=AD39_RS15475;product=MFS transporter;protein_id=WP_032171718.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 18422 19534 . - . ID=gene-AD39_RS15470;Name=AD39_RS15470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15470;old_locus_tag=AD39_1724 NZ_JJLH01000026.1 Protein Homology CDS 18422 19534 . - 0 ID=cds-WP_000705119.1;Parent=gene-AD39_RS15470;Dbxref=GenBank:WP_000705119.1;Name=WP_000705119.1;Ontology_term=GO:0000287,GO:0003824;gbkey=CDS;go_function=magnesium ion binding|0000287||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000705119.1;locus_tag=AD39_RS15470;product=mandelate racemase/muconate lactonizing enzyme family protein;protein_id=WP_000705119.1;transl_table=11 NZ_JJLH01000026.1 RefSeq pseudogene 19715 20181 . + . ID=gene-AD39_RS26835;Name=AD39_RS26835;end_range=20181,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS26835;partial=true;pseudo=true;start_range=.,19715 NZ_JJLH01000026.1 Protein Homology CDS 19715 20181 . + 0 ID=cds-AD39_RS26835;Parent=gene-AD39_RS26835;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=20181,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000058881.1;locus_tag=AD39_RS26835;partial=true;product=type I restriction endonuclease subunit R;pseudo=true;start_range=.,19715;transl_table=11 NZ_JJLH01000026.1 RefSeq pseudogene 20266 20675 . + . ID=gene-AD39_RS26845;Name=AD39_RS26845;end_range=20675,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS26845;partial=true;pseudo=true NZ_JJLH01000026.1 Protein Homology CDS 20266 20675 . + 0 ID=cds-AD39_RS26845;Parent=gene-AD39_RS26845;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;end_range=20675,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_025243830.1;locus_tag=AD39_RS26845;partial=true;product=transposase;pseudo=true;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 20781 21943 . + . ID=gene-AD39_RS15455;Name=AD39_RS15455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15455;old_locus_tag=AD39_1728 NZ_JJLH01000026.1 Protein Homology CDS 20781 21018 . + 0 ID=cds-WP_205247893.1;Parent=gene-AD39_RS15455;Dbxref=GenBank:WP_205247893.1;Name=WP_205247893.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611570.1;locus_tag=AD39_RS15455;product=IS3 family transposase;protein_id=WP_205247893.1;transl_table=11 NZ_JJLH01000026.1 Protein Homology CDS 21018 21943 . + 2 ID=cds-WP_205247893.1;Parent=gene-AD39_RS15455;Dbxref=GenBank:WP_205247893.1;Name=WP_205247893.1;Note=programmed frameshift;Ontology_term=GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611570.1;locus_tag=AD39_RS15455;product=IS3 family transposase;protein_id=WP_205247893.1;transl_table=11 NZ_JJLH01000026.1 cmsearch sequence_feature 21011 21127 . + . ID=id-AD39_RS15455;Dbxref=RFAM:RF01497;Note=AL1L pseudoknot;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS15455 NZ_JJLH01000026.1 RefSeq gene 22201 24396 . - . ID=gene-AD39_RS15450;Name=iutA;gbkey=Gene;gene=iutA;gene_biotype=protein_coding;locus_tag=AD39_RS15450;old_locus_tag=AD39_1729 NZ_JJLH01000026.1 Protein Homology CDS 22201 24396 . - 0 ID=cds-WP_001432292.1;Parent=gene-AD39_RS15450;Dbxref=GenBank:WP_001432292.1;Name=WP_001432292.1;gbkey=CDS;gene=iutA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709458.2;locus_tag=AD39_RS15450;product=ferric aerobactin receptor IutA;protein_id=WP_001432292.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 24402 25739 . - . ID=gene-AD39_RS15445;Name=iucD;gbkey=Gene;gene=iucD;gene_biotype=protein_coding;locus_tag=AD39_RS15445;old_locus_tag=AD39_1730 NZ_JJLH01000026.1 Protein Homology CDS 24402 25739 . - 0 ID=cds-WP_000750139.1;Parent=gene-AD39_RS15445;Dbxref=GenBank:WP_000750139.1;Name=WP_000750139.1;gbkey=CDS;gene=iucD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709457.1;locus_tag=AD39_RS15445;product=NADPH-dependent L-lysine N(6)-monooxygenase IucD;protein_id=WP_000750139.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 25736 27478 . - . ID=gene-AD39_RS15440;Name=iucC;gbkey=Gene;gene=iucC;gene_biotype=protein_coding;locus_tag=AD39_RS15440;old_locus_tag=AD39_1731 NZ_JJLH01000026.1 Protein Homology CDS 25736 27478 . - 0 ID=cds-WP_032287551.1;Parent=gene-AD39_RS15440;Dbxref=GenBank:WP_032287551.1;Name=WP_032287551.1;gbkey=CDS;gene=iucC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709456.1;locus_tag=AD39_RS15440;product=NIS family aerobactin synthetase IucC;protein_id=WP_032287551.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 27478 28425 . - . ID=gene-AD39_RS15435;Name=iucB;gbkey=Gene;gene=iucB;gene_biotype=protein_coding;locus_tag=AD39_RS15435;old_locus_tag=AD39_1732 NZ_JJLH01000026.1 Protein Homology CDS 27478 28425 . - 0 ID=cds-WP_001287497.1;Parent=gene-AD39_RS15435;Dbxref=GenBank:WP_001287497.1;Name=WP_001287497.1;gbkey=CDS;gene=iucB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709455.1;locus_tag=AD39_RS15435;product=N(6)-hydroxylysine O-acetyltransferase IucB;protein_id=WP_001287497.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 28426 30150 . - . ID=gene-AD39_RS15430;Name=iucA;gbkey=Gene;gene=iucA;gene_biotype=protein_coding;locus_tag=AD39_RS15430;old_locus_tag=AD39_1733 NZ_JJLH01000026.1 Protein Homology CDS 28426 30150 . - 0 ID=cds-WP_001299620.1;Parent=gene-AD39_RS15430;Dbxref=GenBank:WP_001299620.1;Name=WP_001299620.1;gbkey=CDS;gene=iucA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001314127.1;locus_tag=AD39_RS15430;product=aerobactin synthase IucA;protein_id=WP_001299620.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 30286 31479 . + . ID=gene-AD39_RS15425;Name=AD39_RS15425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15425;old_locus_tag=AD39_1734 NZ_JJLH01000026.1 Protein Homology CDS 30286 31479 . + 0 ID=cds-WP_000074481.1;Parent=gene-AD39_RS15425;Dbxref=GenBank:WP_000074481.1;Name=WP_000074481.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709453.1;locus_tag=AD39_RS15425;product=MFS transporter;protein_id=WP_000074481.1;transl_table=11 NZ_JJLH01000026.1 RefSeq pseudogene 31865 32863 . + . ID=gene-AD39_RS29005;Name=AD39_RS29005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29005;partial=true;pseudo=true;start_range=.,31865 NZ_JJLH01000026.1 Protein Homology CDS 31865 32863 . + 0 ID=cds-AD39_RS29005;Parent=gene-AD39_RS29005;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611570.1;locus_tag=AD39_RS29005;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,31865;transl_table=11 NZ_JJLH01000026.1 cmsearch sequence_feature 31930 32046 . + . ID=id-AD39_RS29005;Dbxref=RFAM:RF01497;Note=AL1L pseudoknot;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS29005;pseudo=true NZ_JJLH01000026.1 RefSeq gene 33115 33990 . + . ID=gene-AD39_RS15415;Name=AD39_RS15415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15415;old_locus_tag=AD39_1737 NZ_JJLH01000026.1 Protein Homology CDS 33115 33990 . + 0 ID=cds-WP_032287552.1;Parent=gene-AD39_RS15415;Dbxref=GenBank:WP_032287552.1;Name=WP_032287552.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012367684.1;locus_tag=AD39_RS15415;product=LysR family transcriptional regulator;protein_id=WP_032287552.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 34062 35450 . - . ID=gene-AD39_RS15410;Name=AD39_RS15410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15410;old_locus_tag=AD39_1738 NZ_JJLH01000026.1 Protein Homology CDS 34062 35450 . - 0 ID=cds-WP_032171726.1;Parent=gene-AD39_RS15410;Dbxref=GenBank:WP_032171726.1;Name=WP_032171726.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015871446.1;locus_tag=AD39_RS15410;product=MmgE/PrpD family protein;protein_id=WP_032171726.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 35588 36952 . - . ID=gene-AD39_RS15405;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;locus_tag=AD39_RS15405;old_locus_tag=AD39_1739 NZ_JJLH01000026.1 Protein Homology CDS 35588 36952 . - 0 ID=cds-WP_023149958.1;Parent=gene-AD39_RS15405;Dbxref=GenBank:WP_023149958.1;Name=WP_023149958.1;Ontology_term=GO:0009152,GO:0004018;gbkey=CDS;gene=purB;go_function=N6-(1%2C2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity|0004018||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013366026.1;locus_tag=AD39_RS15405;product=adenylosuccinate lyase;protein_id=WP_023149958.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 37440 38612 . + . ID=gene-AD39_RS0124190;Name=metC;gbkey=Gene;gene=metC;gene_biotype=protein_coding;locus_tag=AD39_RS0124190;old_locus_tag=AD39_1740 NZ_JJLH01000026.1 Protein Homology CDS 37440 38612 . + 0 ID=cds-WP_024166501.1;Parent=gene-AD39_RS0124190;Dbxref=GenBank:WP_024166501.1;Name=WP_024166501.1;Ontology_term=GO:0009086,GO:0047804;gbkey=CDS;gene=metC;go_function=cysteine-S-conjugate beta-lyase activity|0047804||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013366025.1;locus_tag=AD39_RS0124190;product=cystathionine beta-lyase;protein_id=WP_024166501.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 38684 40051 . + . ID=gene-AD39_RS15400;Name=dcuC;gbkey=Gene;gene=dcuC;gene_biotype=protein_coding;locus_tag=AD39_RS15400;old_locus_tag=AD39_1741 NZ_JJLH01000026.1 Protein Homology CDS 38684 40051 . + 0 ID=cds-WP_023149960.1;Parent=gene-AD39_RS15400;Dbxref=GenBank:WP_023149960.1;Name=WP_023149960.1;Ontology_term=GO:0015740,GO:0015556,GO:0016020;gbkey=CDS;gene=dcuC;go_component=membrane|0016020||IEA;go_function=C4-dicarboxylate transmembrane transporter activity|0015556||IEA;go_process=C4-dicarboxylate transport|0015740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013366024.1;locus_tag=AD39_RS15400;product=C4-dicarboxylate transporter DcuC;protein_id=WP_023149960.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 40359 41762 . + . ID=gene-AD39_RS15395;Name=fumC;gbkey=Gene;gene=fumC;gene_biotype=protein_coding;locus_tag=AD39_RS15395;old_locus_tag=AD39_1742 NZ_JJLH01000026.1 Protein Homology CDS 40359 41762 . + 0 ID=cds-WP_023149961.1;Parent=gene-AD39_RS15395;Dbxref=GenBank:WP_023149961.1;Name=WP_023149961.1;Ontology_term=GO:0006106,GO:0004333,GO:0045239;gbkey=CDS;gene=fumC;go_component=tricarboxylic acid cycle heteromeric enzyme complex|0045239||IEA;go_function=fumarate hydratase activity|0004333||IEA;go_process=fumarate metabolic process|0006106||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012905714.1;locus_tag=AD39_RS15395;product=class II fumarate hydratase;protein_id=WP_023149961.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 42028 42525 . - . ID=gene-AD39_RS0124195;Name=AD39_RS0124195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124195 NZ_JJLH01000026.1 Protein Homology CDS 42028 42525 . - 0 ID=cds-WP_077695120.1;Parent=gene-AD39_RS0124195;Dbxref=GenBank:WP_077695120.1;Name=WP_077695120.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009652429.1;locus_tag=AD39_RS0124195;product=putative zinc ribbon protein;protein_id=WP_077695120.1;transl_table=11 NZ_JJLH01000026.1 RefSeq pseudogene 42640 43835 . - . ID=gene-AD39_RS28400;Name=AD39_RS28400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28400;old_locus_tag=AD39_1744;pseudo=true NZ_JJLH01000026.1 Protein Homology CDS 42640 43835 . - 0 ID=cds-AD39_RS28400;Parent=gene-AD39_RS28400;Note=frameshifted;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001297906.1;locus_tag=AD39_RS28400;product=IS110-like element ISEc20 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 44282 44575 . - . ID=gene-AD39_RS0124210;Name=AD39_RS0124210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124210;old_locus_tag=AD39_1746 NZ_JJLH01000026.1 GeneMarkS-2+ CDS 44282 44575 . - 0 ID=cds-WP_023149966.1;Parent=gene-AD39_RS0124210;Dbxref=GenBank:WP_023149966.1;Name=WP_023149966.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS0124210;product=hypothetical protein;protein_id=WP_023149966.1;transl_table=11 NZ_JJLH01000026.1 RefSeq pseudogene 44589 44714 . + . ID=gene-AD39_RS26870;Name=AD39_RS26870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS26870;old_locus_tag=AD39_1747;partial=true;pseudo=true;start_range=.,44589 NZ_JJLH01000026.1 Protein Homology CDS 44589 44714 . + 0 ID=cds-AD39_RS26870;Parent=gene-AD39_RS26870;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000080164.1;locus_tag=AD39_RS26870;partial=true;product=transposase domain-containing protein;pseudo=true;start_range=.,44589;transl_table=11 NZ_JJLH01000026.1 RefSeq pseudogene 44744 44857 . - . ID=gene-AD39_RS26875;Name=tnpB;gbkey=Gene;gene=tnpB;gene_biotype=pseudogene;locus_tag=AD39_RS26875;old_locus_tag=AD39_1748;partial=true;pseudo=true;start_range=.,44744 NZ_JJLH01000026.1 Protein Homology CDS 44744 44857 . - 0 ID=cds-AD39_RS26875;Parent=gene-AD39_RS26875;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;gene=tnpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858246.1;locus_tag=AD39_RS26875;partial=true;product=IS66 family insertion sequence element accessory protein TnpB;pseudo=true;start_range=.,44744;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 45395 45622 . + . ID=gene-AD39_RS29425;Name=AD39_RS29425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29425 NZ_JJLH01000026.1 GeneMarkS-2+ CDS 45395 45622 . + 0 ID=cds-WP_023149700.1;Parent=gene-AD39_RS29425;Dbxref=GenBank:WP_023149700.1;Name=WP_023149700.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS29425;product=hypothetical protein;protein_id=WP_023149700.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 45704 48820 . - . ID=gene-AD39_RS15390;Name=AD39_RS15390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15390;old_locus_tag=AD39_1750 NZ_JJLH01000026.1 Protein Homology CDS 45704 48820 . - 0 ID=cds-WP_023149701.1;Parent=gene-AD39_RS15390;Dbxref=GenBank:WP_023149701.1;Name=WP_023149701.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001764166.1;locus_tag=AD39_RS15390;product=HsdR family type I site-specific deoxyribonuclease;protein_id=WP_023149701.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 48942 50156 . - . ID=gene-AD39_RS15385;Name=AD39_RS15385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15385;old_locus_tag=AD39_1751 NZ_JJLH01000026.1 Protein Homology CDS 48942 50156 . - 0 ID=cds-WP_032171728.1;Parent=gene-AD39_RS15385;Dbxref=GenBank:WP_032171728.1;Name=WP_032171728.1;Ontology_term=GO:0006304,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001519412.1;locus_tag=AD39_RS15385;product=restriction endonuclease subunit S;protein_id=WP_032171728.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 50153 51709 . - . ID=gene-AD39_RS15380;Name=AD39_RS15380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15380;old_locus_tag=AD39_1752 NZ_JJLH01000026.1 Protein Homology CDS 50153 51709 . - 0 ID=cds-WP_032261547.1;Parent=gene-AD39_RS15380;Dbxref=GenBank:WP_032261547.1;Name=WP_032261547.1;Ontology_term=GO:0009307,GO:0003677,GO:0009007;gbkey=CDS;go_function=DNA binding|0003677||IEA,site-specific DNA-methyltransferase (adenine-specific) activity|0009007||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005220915.1;locus_tag=AD39_RS15380;product=type I restriction-modification system subunit M;protein_id=WP_032261547.1;transl_table=11 NZ_JJLH01000026.1 RefSeq gene 51973 52194 . + . ID=gene-AD39_RS15375;Name=AD39_RS15375;end_range=52194,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15375;old_locus_tag=AD39_1753;partial=true NZ_JJLH01000026.1 Protein Homology CDS 51973 52194 . + 0 ID=cds-WP_001069700.1;Parent=gene-AD39_RS15375;Dbxref=GenBank:WP_001069700.1;Name=WP_001069700.1;Ontology_term=GO:0005525;end_range=52194,.;gbkey=CDS;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309422.1;locus_tag=AD39_RS15375;partial=true;product=GTPase;protein_id=WP_001069700.1;transl_table=11 ##sequence-region NZ_JJLH01000027.1 1 236312 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000027.1 RefSeq region 1 236312 . + . ID=NZ_JJLH01000027.1:1..236312;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000027.1 RefSeq gene 1 1394 . - . ID=gene-AD39_RS15370;Name=AD39_RS15370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15370;old_locus_tag=AD39_1754;partial=true;start_range=.,1 NZ_JJLH01000027.1 Protein Homology CDS 1 1394 . - 0 ID=cds-WP_001466171.1;Parent=gene-AD39_RS15370;Dbxref=GenBank:WP_001466171.1;Name=WP_001466171.1;Ontology_term=GO:0006540,GO:0004351,GO:0030170;gbkey=CDS;go_function=glutamate decarboxylase activity|0004351||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=gamma-aminobutyrate shunt|0006540||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310125.1;locus_tag=AD39_RS15370;partial=true;product=glutamate decarboxylase;protein_id=WP_001466171.1;start_range=.,1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 1756 4539 . - . ID=gene-AD39_RS15365;Name=pqqL;gbkey=Gene;gene=pqqL;gene_biotype=protein_coding;locus_tag=AD39_RS15365;old_locus_tag=AD39_1756 NZ_JJLH01000027.1 Protein Homology CDS 1756 4539 . - 0 ID=cds-WP_032283223.1;Parent=gene-AD39_RS15365;Dbxref=GenBank:WP_032283223.1;Name=WP_032283223.1;Ontology_term=GO:0008237,GO:0046872;gbkey=CDS;gene=pqqL;go_function=metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310126.2;locus_tag=AD39_RS15365;product=M16 family metallopeptidase;protein_id=WP_032283223.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 4596 6968 . - . ID=gene-AD39_RS15360;Name=yddB;gbkey=Gene;gene=yddB;gene_biotype=protein_coding;locus_tag=AD39_RS15360;old_locus_tag=AD39_1757 NZ_JJLH01000027.1 Protein Homology CDS 4596 6968 . - 0 ID=cds-WP_000832445.1;Parent=gene-AD39_RS15360;Dbxref=GenBank:WP_000832445.1;Name=WP_000832445.1;Ontology_term=GO:0015891,GO:0055085,GO:0015267,GO:0009279,GO:0016020;gbkey=CDS;gene=yddB;go_component=cell outer membrane|0009279||IEA,membrane|0016020||IEA;go_function=channel activity|0015267||IEA;go_process=siderophore transport|0015891||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310127.1;locus_tag=AD39_RS15360;product=TonB-dependent receptor plug domain-containing protein;protein_id=WP_000832445.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 7006 8691 . - . ID=gene-AD39_RS15355;Name=yddA;gbkey=Gene;gene=yddA;gene_biotype=protein_coding;locus_tag=AD39_RS15355;old_locus_tag=AD39_1758 NZ_JJLH01000027.1 Protein Homology CDS 7006 8691 . - 0 ID=cds-WP_000628587.1;Parent=gene-AD39_RS15355;Dbxref=GenBank:WP_000628587.1;Name=WP_000628587.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;gene=yddA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416013.1;locus_tag=AD39_RS15355;product=ABC transporter ATP-binding protein/permease;protein_id=WP_000628587.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 8894 9016 . + . ID=gene-AD39_RS29010;Name=AD39_RS29010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29010 NZ_JJLH01000027.1 Protein Homology CDS 8894 9016 . + 0 ID=cds-WP_120795387.1;Parent=gene-AD39_RS29010;Dbxref=GenBank:WP_120795387.1;Name=WP_120795387.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518784.1;locus_tag=AD39_RS29010;product=protein YneP;protein_id=WP_120795387.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 8982 10139 . - . ID=gene-AD39_RS15350;Name=ydeM;gbkey=Gene;gene=ydeM;gene_biotype=protein_coding;locus_tag=AD39_RS15350;old_locus_tag=AD39_1759 NZ_JJLH01000027.1 Protein Homology CDS 8982 10139 . - 0 ID=cds-WP_001299007.1;Parent=gene-AD39_RS15350;Dbxref=GenBank:WP_001299007.1;Name=WP_001299007.1;Ontology_term=GO:0018209,GO:0046500,GO:0016491,GO:0051539;gbkey=CDS;gene=ydeM;go_function=oxidoreductase activity|0016491||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=peptidyl-serine modification|0018209||IEA,S-adenosylmethionine metabolic process|0046500||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416014.4;locus_tag=AD39_RS15350;product=anaerobic sulfatase maturase;protein_id=WP_001299007.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 10191 11873 . - . ID=gene-AD39_RS15345;Name=ydeN;gbkey=Gene;gene=ydeN;gene_biotype=protein_coding;locus_tag=AD39_RS15345;old_locus_tag=AD39_1760 NZ_JJLH01000027.1 Protein Homology CDS 10191 11873 . - 0 ID=cds-WP_001295684.1;Parent=gene-AD39_RS15345;Dbxref=GenBank:WP_001295684.1;Name=WP_001295684.1;Ontology_term=GO:0008484;gbkey=CDS;gene=ydeN;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416015.2;locus_tag=AD39_RS15345;product=sulfatase-like hydrolase/transferase;protein_id=WP_001295684.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 12277 13038 . - . ID=gene-AD39_RS15340;Name=ydeO;gbkey=Gene;gene=ydeO;gene_biotype=protein_coding;locus_tag=AD39_RS15340;old_locus_tag=AD39_1761 NZ_JJLH01000027.1 Protein Homology CDS 12277 13038 . - 0 ID=cds-WP_000060489.1;Parent=gene-AD39_RS15340;Dbxref=GenBank:WP_000060489.1;Name=WP_000060489.1;gbkey=CDS;gene=ydeO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416016.1;locus_tag=AD39_RS15340;product=acid stress response transcriptional regulator YdeO;protein_id=WP_000060489.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 13112 13309 . - . ID=gene-AD39_RS0124235;Name=safA;gbkey=Gene;gene=safA;gene_biotype=protein_coding;locus_tag=AD39_RS0124235 NZ_JJLH01000027.1 Protein Homology CDS 13112 13309 . - 0 ID=cds-WP_000543394.1;Parent=gene-AD39_RS0124235;Dbxref=GenBank:WP_000543394.1;Name=WP_000543394.1;gbkey=CDS;gene=safA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310132.1;locus_tag=AD39_RS0124235;product=two-component system connector SafA;protein_id=WP_000543394.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 13557 15836 . - . ID=gene-AD39_RS15335;Name=ydeP;gbkey=Gene;gene=ydeP;gene_biotype=protein_coding;locus_tag=AD39_RS15335;old_locus_tag=AD39_1762 NZ_JJLH01000027.1 Protein Homology CDS 13557 15836 . - 0 ID=cds-WP_003580250.1;Parent=gene-AD39_RS15335;Dbxref=GenBank:WP_003580250.1;Name=WP_003580250.1;gbkey=CDS;gene=ydeP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416018.1;locus_tag=AD39_RS15335;product=acid resistance putative oxidoreductase YdeP;protein_id=WP_003580250.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 16170 17084 . - . ID=gene-AD39_RS15330;Name=ydeQ;gbkey=Gene;gene=ydeQ;gene_biotype=protein_coding;locus_tag=AD39_RS15330;old_locus_tag=AD39_1763 NZ_JJLH01000027.1 Protein Homology CDS 16170 17084 . - 0 ID=cds-WP_000520679.1;Parent=gene-AD39_RS15330;Dbxref=GenBank:WP_000520679.1;Name=WP_000520679.1;gbkey=CDS;gene=ydeQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310134.1;locus_tag=AD39_RS15330;product=fimbrial protein;protein_id=WP_000520679.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 17144 17647 . - . ID=gene-AD39_RS15325;Name=ydeR;gbkey=Gene;gene=ydeR;gene_biotype=protein_coding;locus_tag=AD39_RS15325;old_locus_tag=AD39_1764 NZ_JJLH01000027.1 Protein Homology CDS 17144 17647 . - 0 ID=cds-WP_032283227.1;Parent=gene-AD39_RS15325;Dbxref=GenBank:WP_032283227.1;Name=WP_032283227.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=ydeR;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416020.1;locus_tag=AD39_RS15325;product=fimbrial protein;protein_id=WP_032283227.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 17660 18190 . - . ID=gene-AD39_RS15320;Name=ydeS;gbkey=Gene;gene=ydeS;gene_biotype=protein_coding;locus_tag=AD39_RS15320;old_locus_tag=AD39_1765 NZ_JJLH01000027.1 Protein Homology CDS 17660 18190 . - 0 ID=cds-WP_000876784.1;Parent=gene-AD39_RS15320;Dbxref=GenBank:WP_000876784.1;Name=WP_000876784.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=ydeS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310136.1;locus_tag=AD39_RS15320;product=fimbrial protein;protein_id=WP_000876784.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 18204 20855 . - . ID=gene-AD39_RS15315;Name=AD39_RS15315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15315;old_locus_tag=AD39_1766 NZ_JJLH01000027.1 Protein Homology CDS 18204 20855 . - 0 ID=cds-WP_032283229.1;Parent=gene-AD39_RS15315;Dbxref=GenBank:WP_032283229.1;Name=WP_032283229.1;Ontology_term=GO:0009297,GO:0015473,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310137.2;locus_tag=AD39_RS15315;product=fimbria/pilus outer membrane usher protein;protein_id=WP_032283229.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 20897 21607 . - . ID=gene-AD39_RS15310;Name=AD39_RS15310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15310;old_locus_tag=AD39_1767 NZ_JJLH01000027.1 Protein Homology CDS 20897 21607 . - 0 ID=cds-WP_001195166.1;Parent=gene-AD39_RS15310;Dbxref=GenBank:WP_001195166.1;Name=WP_001195166.1;Ontology_term=GO:0071555,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310139.1;locus_tag=AD39_RS15310;product=fimbria/pilus periplasmic chaperone;protein_id=WP_001195166.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 21968 22531 . - . ID=gene-AD39_RS15305;Name=fimA;gbkey=Gene;gene=fimA;gene_biotype=protein_coding;locus_tag=AD39_RS15305;old_locus_tag=AD39_1768 NZ_JJLH01000027.1 Protein Homology CDS 21968 22531 . - 0 ID=cds-WP_001296758.1;Parent=gene-AD39_RS15305;Dbxref=GenBank:WP_001296758.1;Name=WP_001296758.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=fimA;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310140.1;locus_tag=AD39_RS15305;product=type 1 fimbrial major subunit FimA;protein_id=WP_001296758.1;transl_table=11 NZ_JJLH01000027.1 RefSeq pseudogene 22965 23173 . - . ID=gene-AD39_RS0124240;Name=AD39_RS0124240;end_range=23173,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0124240;partial=true;pseudo=true NZ_JJLH01000027.1 Protein Homology CDS 22965 23173 . - 0 ID=cds-AD39_RS0124240;Parent=gene-AD39_RS0124240;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006355,GO:0003700,GO:0043565;end_range=23173,.;gbkey=CDS;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005226947.1;locus_tag=AD39_RS0124240;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 23485 24807 . - . ID=gene-AD39_RS15300;Name=hipA;gbkey=Gene;gene=hipA;gene_biotype=protein_coding;locus_tag=AD39_RS15300;old_locus_tag=AD39_1769 NZ_JJLH01000027.1 Protein Homology CDS 23485 24807 . - 0 ID=cds-WP_001125455.1;Parent=gene-AD39_RS15300;Dbxref=GenBank:WP_001125455.1;Name=WP_001125455.1;gbkey=CDS;gene=hipA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416024.1;locus_tag=AD39_RS15300;product=type II toxin-antitoxin system serine/threonine protein kinase toxin HipA;protein_id=WP_001125455.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 24807 25073 . - . ID=gene-AD39_RS15295;Name=hipB;gbkey=Gene;gene=hipB;gene_biotype=protein_coding;locus_tag=AD39_RS15295;old_locus_tag=AD39_1770 NZ_JJLH01000027.1 Protein Homology CDS 24807 25073 . - 0 ID=cds-WP_001296726.1;Parent=gene-AD39_RS15295;Dbxref=GenBank:WP_001296726.1;Name=WP_001296726.1;gbkey=CDS;gene=hipB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416025.1;locus_tag=AD39_RS15295;product=type II toxin-antitoxin system antitoxin HipB;protein_id=WP_001296726.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 25282 30702 . - . ID=gene-AD39_RS15290;Name=AD39_RS15290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15290;old_locus_tag=AD39_1771 NZ_JJLH01000027.1 Protein Homology CDS 25282 30702 . - 0 ID=cds-WP_032283233.1;Parent=gene-AD39_RS15290;Dbxref=GenBank:WP_032283233.1;Name=WP_032283233.1;Ontology_term=GO:0019867;gbkey=CDS;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016244610.1;locus_tag=AD39_RS15290;product=ECSE_1600 family autotransporter;protein_id=WP_032283233.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 31233 32825 . - . ID=gene-AD39_RS15285;Name=lsrK;gbkey=Gene;gene=lsrK;gene_biotype=protein_coding;locus_tag=AD39_RS15285;old_locus_tag=AD39_1772 NZ_JJLH01000027.1 Protein Homology CDS 31233 32825 . - 0 ID=cds-WP_000113127.1;Parent=gene-AD39_RS15285;Dbxref=GenBank:WP_000113127.1;Name=WP_000113127.1;Ontology_term=GO:0005975,GO:0009372,GO:0071518;gbkey=CDS;gene=lsrK;go_function=autoinducer-2 kinase activity|0071518||IEA;go_process=carbohydrate metabolic process|0005975||IEA,quorum sensing|0009372||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416028.3;locus_tag=AD39_RS15285;product=autoinducer-2 kinase;protein_id=WP_000113127.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 32904 33857 . - . ID=gene-AD39_RS15280;Name=lsrR;gbkey=Gene;gene=lsrR;gene_biotype=protein_coding;locus_tag=AD39_RS15280;old_locus_tag=AD39_1773 NZ_JJLH01000027.1 Protein Homology CDS 32904 33857 . - 0 ID=cds-WP_001430432.1;Parent=gene-AD39_RS15280;Dbxref=GenBank:WP_001430432.1;Name=WP_001430432.1;gbkey=CDS;gene=lsrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310146.1;locus_tag=AD39_RS15280;product=transcriptional regulator LsrR;protein_id=WP_001430432.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 34106 35641 . + . ID=gene-AD39_RS15275;Name=lsrA;gbkey=Gene;gene=lsrA;gene_biotype=protein_coding;locus_tag=AD39_RS15275;old_locus_tag=AD39_1774 NZ_JJLH01000027.1 Protein Homology CDS 34106 35641 . + 0 ID=cds-WP_001194911.1;Parent=gene-AD39_RS15275;Dbxref=GenBank:WP_001194911.1;Name=WP_001194911.1;Ontology_term=GO:1905887,GO:0005524,GO:0042626,GO:0016020;gbkey=CDS;gene=lsrA;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=autoinducer AI-2 transmembrane transport|1905887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416030.1;locus_tag=AD39_RS15275;product=autoinducer 2 ABC transporter ATP-binding protein LsrA;protein_id=WP_001194911.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 35635 36663 . + . ID=gene-AD39_RS15270;Name=lsrC;gbkey=Gene;gene=lsrC;gene_biotype=protein_coding;locus_tag=AD39_RS15270;old_locus_tag=AD39_1775 NZ_JJLH01000027.1 Protein Homology CDS 35635 36663 . + 0 ID=cds-WP_000911171.1;Parent=gene-AD39_RS15270;Dbxref=GenBank:WP_000911171.1;Name=WP_000911171.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=lsrC;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416031.1;locus_tag=AD39_RS15270;product=autoinducer 2 ABC transporter permease LsrC;protein_id=WP_000911171.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 36663 37655 . + . ID=gene-AD39_RS15265;Name=lsrD;gbkey=Gene;gene=lsrD;gene_biotype=protein_coding;locus_tag=AD39_RS15265;old_locus_tag=AD39_1776 NZ_JJLH01000027.1 Protein Homology CDS 36663 37655 . + 0 ID=cds-WP_001222716.1;Parent=gene-AD39_RS15265;Dbxref=GenBank:WP_001222716.1;Name=WP_001222716.1;gbkey=CDS;gene=lsrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416032.1;locus_tag=AD39_RS15265;product=autoinducer 2 ABC transporter permease LsrD;protein_id=WP_001222716.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 37667 38689 . + . ID=gene-AD39_RS15260;Name=lsrB;gbkey=Gene;gene=lsrB;gene_biotype=protein_coding;locus_tag=AD39_RS15260;old_locus_tag=AD39_1777 NZ_JJLH01000027.1 Protein Homology CDS 37667 38689 . + 0 ID=cds-WP_032287554.1;Parent=gene-AD39_RS15260;Dbxref=GenBank:WP_032287554.1;Name=WP_032287554.1;gbkey=CDS;gene=lsrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310150.1;locus_tag=AD39_RS15260;product=autoinducer 2 ABC transporter substrate-binding protein LsrB;protein_id=WP_032287554.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 38716 39591 . + . ID=gene-AD39_RS15255;Name=lsrF;gbkey=Gene;gene=lsrF;gene_biotype=protein_coding;locus_tag=AD39_RS15255;old_locus_tag=AD39_1778 NZ_JJLH01000027.1 Protein Homology CDS 38716 39591 . + 0 ID=cds-WP_000774169.1;Parent=gene-AD39_RS15255;Dbxref=GenBank:WP_000774169.1;Name=WP_000774169.1;Ontology_term=GO:0016829;gbkey=CDS;gene=lsrF;go_function=lyase activity|0016829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310151.1;locus_tag=AD39_RS15255;product=3-hydroxy-5-phosphonooxypentane-2%2C4-dione thiolase;protein_id=WP_000774169.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 39615 39905 . + . ID=gene-AD39_RS15250;Name=lsrG;gbkey=Gene;gene=lsrG;gene_biotype=protein_coding;locus_tag=AD39_RS15250;old_locus_tag=AD39_1779 NZ_JJLH01000027.1 Protein Homology CDS 39615 39905 . + 0 ID=cds-WP_000558520.1;Parent=gene-AD39_RS15250;Dbxref=GenBank:WP_000558520.1;Name=WP_000558520.1;gbkey=CDS;gene=lsrG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310152.1;locus_tag=AD39_RS15250;product=(4S)-4-hydroxy-5-phosphonooxypentane-2%2C3-dione isomerase;protein_id=WP_000558520.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 39962 40720 . + . ID=gene-AD39_RS15245;Name=tam;gbkey=Gene;gene=tam;gene_biotype=protein_coding;locus_tag=AD39_RS15245;old_locus_tag=AD39_1780 NZ_JJLH01000027.1 Protein Homology CDS 39962 40720 . + 0 ID=cds-WP_001286558.1;Parent=gene-AD39_RS15245;Dbxref=GenBank:WP_001286558.1;Name=WP_001286558.1;Ontology_term=GO:0030798;gbkey=CDS;gene=tam;go_function=trans-aconitate 2-methyltransferase activity|0030798||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416036.1;locus_tag=AD39_RS15245;product=trans-aconitate 2-methyltransferase;protein_id=WP_001286558.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 40724 41638 . - . ID=gene-AD39_RS15240;Name=yneE;gbkey=Gene;gene=yneE;gene_biotype=protein_coding;locus_tag=AD39_RS15240;old_locus_tag=AD39_1781 NZ_JJLH01000027.1 Protein Homology CDS 40724 41638 . - 0 ID=cds-WP_000637082.1;Parent=gene-AD39_RS15240;Dbxref=GenBank:WP_000637082.1;Name=WP_000637082.1;Ontology_term=GO:0005254;gbkey=CDS;gene=yneE;go_function=chloride channel activity|0005254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416037.2;locus_tag=AD39_RS15240;product=bestrophin family protein;protein_id=WP_000637082.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 41845 43296 . - . ID=gene-AD39_RS15235;Name=uxaB;gbkey=Gene;gene=uxaB;gene_biotype=protein_coding;locus_tag=AD39_RS15235;old_locus_tag=AD39_1782 NZ_JJLH01000027.1 Protein Homology CDS 41845 43296 . - 0 ID=cds-WP_032283236.1;Parent=gene-AD39_RS15235;Dbxref=GenBank:WP_032283236.1;Name=WP_032283236.1;gbkey=CDS;gene=uxaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310155.1;locus_tag=AD39_RS15235;product=tagaturonate reductase;protein_id=WP_032283236.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 43523 44941 . - . ID=gene-AD39_RS15230;Name=AD39_RS15230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15230;old_locus_tag=AD39_1784 NZ_JJLH01000027.1 Protein Homology CDS 43523 44941 . - 0 ID=cds-WP_000558050.1;Parent=gene-AD39_RS15230;Dbxref=GenBank:WP_000558050.1;Name=WP_000558050.1;Ontology_term=GO:0007165,GO:0005525,GO:0046872,GO:0052621;gbkey=CDS;go_function=GTP binding|0005525||IEA,metal ion binding|0046872||IEA,diguanylate cyclase activity|0052621||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310156.2;locus_tag=AD39_RS15230;product=sensor domain-containing diguanylate cyclase;protein_id=WP_000558050.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 45080 45439 . - . ID=gene-AD39_RS15225;Name=yneG;gbkey=Gene;gene=yneG;gene_biotype=protein_coding;locus_tag=AD39_RS15225;old_locus_tag=AD39_1785 NZ_JJLH01000027.1 Protein Homology CDS 45080 45439 . - 0 ID=cds-WP_001191027.1;Parent=gene-AD39_RS15225;Dbxref=GenBank:WP_001191027.1;Name=WP_001191027.1;gbkey=CDS;gene=yneG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416040.1;locus_tag=AD39_RS15225;product=DUF4186 domain-containing protein;protein_id=WP_001191027.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 45439 46365 . - . ID=gene-AD39_RS15220;Name=glsB;gbkey=Gene;gene=glsB;gene_biotype=protein_coding;locus_tag=AD39_RS15220;old_locus_tag=AD39_1786 NZ_JJLH01000027.1 Protein Homology CDS 45439 46365 . - 0 ID=cds-WP_000257409.1;Parent=gene-AD39_RS15220;Dbxref=GenBank:WP_000257409.1;Name=WP_000257409.1;Ontology_term=GO:0006541,GO:0004359;gbkey=CDS;gene=glsB;go_function=glutaminase activity|0004359||IEA;go_process=glutamine metabolic process|0006541||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310158.1;locus_tag=AD39_RS15220;product=glutaminase B;protein_id=WP_000257409.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 46429 47817 . - . ID=gene-AD39_RS15215;Name=sad;gbkey=Gene;gene=sad;gene_biotype=protein_coding;locus_tag=AD39_RS15215;old_locus_tag=AD39_1787 NZ_JJLH01000027.1 Protein Homology CDS 46429 47817 . - 0 ID=cds-WP_000156615.1;Parent=gene-AD39_RS15215;Dbxref=GenBank:WP_000156615.1;Name=WP_000156615.1;Ontology_term=GO:0004030;gbkey=CDS;gene=sad;go_function=aldehyde dehydrogenase [NAD(P)+] activity|0004030||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416042.2;locus_tag=AD39_RS15215;product=succinate-semialdehyde dehydrogenase;protein_id=WP_000156615.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 47918 48799 . + . ID=gene-AD39_RS15210;Name=ptrR;gbkey=Gene;gene=ptrR;gene_biotype=protein_coding;locus_tag=AD39_RS15210;old_locus_tag=AD39_1788 NZ_JJLH01000027.1 Protein Homology CDS 47918 48799 . + 0 ID=cds-WP_032287555.1;Parent=gene-AD39_RS15210;Dbxref=GenBank:WP_032287555.1;Name=WP_032287555.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ptrR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416043.1;locus_tag=AD39_RS15210;product=putrescine utilization regulator PtrR;protein_id=WP_032287555.1;transl_table=11 NZ_JJLH01000027.1 RefSeq pseudogene 48877 49991 . + . ID=gene-AD39_RS15205;Name=yneK;gbkey=Gene;gene=yneK;gene_biotype=pseudogene;locus_tag=AD39_RS15205;old_locus_tag=AD39_1789;pseudo=true NZ_JJLH01000027.1 Protein Homology CDS 48877 49991 . + 0 ID=cds-AD39_RS15205;Parent=gene-AD39_RS15205;Note=frameshifted;gbkey=CDS;gene=yneK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416044.1;locus_tag=AD39_RS15205;product=putative protein YneK;pseudo=true;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 50141 51331 . + . ID=gene-AD39_RS15200;Name=ydeA;gbkey=Gene;gene=ydeA;gene_biotype=protein_coding;locus_tag=AD39_RS15200;old_locus_tag=AD39_1791 NZ_JJLH01000027.1 Protein Homology CDS 50141 51331 . + 0 ID=cds-WP_001416339.1;Parent=gene-AD39_RS15200;Dbxref=GenBank:WP_001416339.1;Name=WP_001416339.1;gbkey=CDS;gene=ydeA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416045.1;locus_tag=AD39_RS15200;product=L-arabinose MFS transporter;protein_id=WP_001416339.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 51356 52021 . - . ID=gene-AD39_RS15195;Name=marC;gbkey=Gene;gene=marC;gene_biotype=protein_coding;locus_tag=AD39_RS15195;old_locus_tag=AD39_1792 NZ_JJLH01000027.1 Protein Homology CDS 51356 52021 . - 0 ID=cds-WP_000885033.1;Parent=gene-AD39_RS15195;Dbxref=GenBank:WP_000885033.1;Name=WP_000885033.1;gbkey=CDS;gene=marC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416046.1;locus_tag=AD39_RS15195;product=NAAT family transporter MarC;protein_id=WP_000885033.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 52233 52667 . + . ID=gene-AD39_RS15190;Name=marR;gbkey=Gene;gene=marR;gene_biotype=protein_coding;locus_tag=AD39_RS15190;old_locus_tag=AD39_1793 NZ_JJLH01000027.1 Protein Homology CDS 52233 52667 . + 0 ID=cds-WP_000843419.1;Parent=gene-AD39_RS15190;Dbxref=GenBank:WP_000843419.1;Name=WP_000843419.1;gbkey=CDS;gene=marR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310164.2;locus_tag=AD39_RS15190;product=multiple antibiotic resistance transcriptional regulator MarR;protein_id=WP_000843419.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 52688 53071 . + . ID=gene-AD39_RS15185;Name=marA;gbkey=Gene;gene=marA;gene_biotype=protein_coding;locus_tag=AD39_RS15185;old_locus_tag=AD39_1794 NZ_JJLH01000027.1 Protein Homology CDS 52688 53071 . + 0 ID=cds-WP_000091199.1;Parent=gene-AD39_RS15185;Dbxref=GenBank:WP_000091199.1;Name=WP_000091199.1;gbkey=CDS;gene=marA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707445.2;locus_tag=AD39_RS15185;product=MDR efflux pump AcrAB transcriptional activator MarA;protein_id=WP_000091199.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 53103 53321 . + . ID=gene-AD39_RS15180;Name=marB;gbkey=Gene;gene=marB;gene_biotype=protein_coding;locus_tag=AD39_RS15180;old_locus_tag=AD39_1795 NZ_JJLH01000027.1 Protein Homology CDS 53103 53321 . + 0 ID=cds-WP_000803526.1;Parent=gene-AD39_RS15180;Dbxref=GenBank:WP_000803526.1;Name=WP_000803526.1;gbkey=CDS;gene=marB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416049.1;locus_tag=AD39_RS15180;product=multiple antibiotic resistance protein MarB;protein_id=WP_000803526.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 53378 54817 . - . ID=gene-AD39_RS15175;Name=AD39_RS15175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15175;old_locus_tag=AD39_1796 NZ_JJLH01000027.1 Protein Homology CDS 53378 54817 . - 0 ID=cds-WP_032283240.1;Parent=gene-AD39_RS15175;Dbxref=GenBank:WP_032283240.1;Name=WP_032283240.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000012594.1;locus_tag=AD39_RS15175;product=6-phospho-beta-glucosidase;protein_id=WP_032283240.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 54842 56515 . - . ID=gene-AD39_RS15170;Name=AD39_RS15170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15170;old_locus_tag=AD39_1797 NZ_JJLH01000027.1 Protein Homology CDS 54842 56515 . - 0 ID=cds-WP_032283241.1;Parent=gene-AD39_RS15170;Dbxref=GenBank:WP_032283241.1;Name=WP_032283241.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016233185.1;locus_tag=AD39_RS15170;product=carbohydrate porin;protein_id=WP_032283241.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 56571 56882 . - . ID=gene-AD39_RS15165;Name=AD39_RS15165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15165;old_locus_tag=AD39_1798 NZ_JJLH01000027.1 Protein Homology CDS 56571 56882 . - 0 ID=cds-WP_001459752.1;Parent=gene-AD39_RS15165;Dbxref=GenBank:WP_001459752.1;Name=WP_001459752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001314746.1;locus_tag=AD39_RS15165;product=PTS lactose/cellobiose transporter subunit IIA;protein_id=WP_001459752.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 56910 58232 . - . ID=gene-AD39_RS15160;Name=AD39_RS15160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15160;old_locus_tag=AD39_1799 NZ_JJLH01000027.1 Protein Homology CDS 56910 58232 . - 0 ID=cds-WP_000523802.1;Parent=gene-AD39_RS15160;Dbxref=GenBank:WP_000523802.1;Name=WP_000523802.1;Ontology_term=GO:0009401,GO:0016773,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001736301.1;locus_tag=AD39_RS15160;product=PTS sugar transporter subunit IIC;protein_id=WP_000523802.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 58347 58658 . - . ID=gene-AD39_RS15155;Name=AD39_RS15155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15155;old_locus_tag=AD39_1800 NZ_JJLH01000027.1 Protein Homology CDS 58347 58658 . - 0 ID=cds-WP_000722572.1;Parent=gene-AD39_RS15155;Dbxref=GenBank:WP_000722572.1;Name=WP_000722572.1;Ontology_term=GO:0008643,GO:0009401,GO:0008982;gbkey=CDS;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=carbohydrate transport|0008643||IEA,phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000722572.1;locus_tag=AD39_RS15155;product=PTS sugar transporter subunit IIB;protein_id=WP_000722572.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 58857 59555 . + . ID=gene-AD39_RS15150;Name=AD39_RS15150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS15150;old_locus_tag=AD39_1802 NZ_JJLH01000027.1 Protein Homology CDS 58857 59555 . + 0 ID=cds-WP_000577191.1;Parent=gene-AD39_RS15150;Dbxref=GenBank:WP_000577191.1;Name=WP_000577191.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000577178.1;locus_tag=AD39_RS15150;product=GntR family transcriptional regulator;protein_id=WP_000577191.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 59600 60499 . - . ID=gene-AD39_RS15145;Name=eamA;gbkey=Gene;gene=eamA;gene_biotype=protein_coding;locus_tag=AD39_RS15145;old_locus_tag=AD39_1803 NZ_JJLH01000027.1 Protein Homology CDS 59600 60499 . - 0 ID=cds-WP_000087216.1;Parent=gene-AD39_RS15145;Dbxref=GenBank:WP_000087216.1;Name=WP_000087216.1;Ontology_term=GO:0016020;gbkey=CDS;gene=eamA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310167.1;locus_tag=AD39_RS15145;product=O-acetylserine/cysteine exporter;protein_id=WP_000087216.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 60694 61881 . + . ID=gene-AD39_RS15140;Name=ydeE;gbkey=Gene;gene=ydeE;gene_biotype=protein_coding;locus_tag=AD39_RS15140;old_locus_tag=AD39_1804 NZ_JJLH01000027.1 Protein Homology CDS 60694 61881 . + 0 ID=cds-WP_001054189.1;Parent=gene-AD39_RS15140;Dbxref=GenBank:WP_001054189.1;Name=WP_001054189.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=ydeE;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416051.1;locus_tag=AD39_RS15140;product=efflux MFS transporter YdeE;protein_id=WP_001054189.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 62008 62103 . + . ID=gene-AD39_RS0124245;Name=mgtS;gbkey=Gene;gene=mgtS;gene_biotype=protein_coding;locus_tag=AD39_RS0124245 NZ_JJLH01000027.1 Protein Homology CDS 62008 62103 . + 0 ID=cds-WP_000901367.1;Parent=gene-AD39_RS0124245;Dbxref=GenBank:WP_000901367.1;Name=WP_000901367.1;gbkey=CDS;gene=mgtS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165319.1;locus_tag=AD39_RS0124245;product=protein MgtS;protein_id=WP_000901367.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 62103 62207 . + . ID=gene-AD39_RS29700;Name=mgtT;gbkey=Gene;gene=mgtT;gene_biotype=protein_coding;locus_tag=AD39_RS29700 NZ_JJLH01000027.1 Protein Homology CDS 62103 62207 . + 0 ID=cds-WP_211180496.1;Parent=gene-AD39_RS29700;Dbxref=GenBank:WP_211180496.1;Name=WP_211180496.1;gbkey=CDS;gene=mgtT;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051185.1;locus_tag=AD39_RS29700;product=protein MgtT;protein_id=WP_211180496.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 62322 63212 . - . ID=gene-AD39_RS15135;Name=dgcZ;gbkey=Gene;gene=dgcZ;gene_biotype=protein_coding;locus_tag=AD39_RS15135;old_locus_tag=AD39_1805 NZ_JJLH01000027.1 Protein Homology CDS 62322 63212 . - 0 ID=cds-WP_000592805.1;Parent=gene-AD39_RS15135;Dbxref=GenBank:WP_000592805.1;Name=WP_000592805.1;gbkey=CDS;gene=dgcZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416052.1;locus_tag=AD39_RS15135;product=diguanylate cyclase DgcZ;protein_id=WP_000592805.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 63467 63859 . - . ID=gene-AD39_RS15130;Name=ydeI;gbkey=Gene;gene=ydeI;gene_biotype=protein_coding;locus_tag=AD39_RS15130;old_locus_tag=AD39_1806 NZ_JJLH01000027.1 Protein Homology CDS 63467 63859 . - 0 ID=cds-WP_000671744.1;Parent=gene-AD39_RS15130;Dbxref=GenBank:WP_000671744.1;Name=WP_000671744.1;gbkey=CDS;gene=ydeI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416054.1;locus_tag=AD39_RS15130;product=YdeI family stress tolerance OB fold protein;protein_id=WP_000671744.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 64135 64653 . + . ID=gene-AD39_RS15125;Name=ydeJ;gbkey=Gene;gene=ydeJ;gene_biotype=protein_coding;locus_tag=AD39_RS15125;old_locus_tag=AD39_1807 NZ_JJLH01000027.1 Protein Homology CDS 64135 64653 . + 0 ID=cds-WP_001024810.1;Parent=gene-AD39_RS15125;Dbxref=GenBank:WP_001024810.1;Name=WP_001024810.1;gbkey=CDS;gene=ydeJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707440.1;locus_tag=AD39_RS15125;product=2-oxo-tetronate isomerase;protein_id=WP_001024810.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 64698 66743 . - . ID=gene-AD39_RS15120;Name=dcp;gbkey=Gene;gene=dcp;gene_biotype=protein_coding;locus_tag=AD39_RS15120;old_locus_tag=AD39_1808 NZ_JJLH01000027.1 Protein Homology CDS 64698 66743 . - 0 ID=cds-WP_001315525.1;Parent=gene-AD39_RS15120;Dbxref=GenBank:WP_001315525.1;Name=WP_001315525.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=dcp;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310174.1;locus_tag=AD39_RS15120;product=peptidyl-dipeptidase Dcp;protein_id=WP_001315525.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 66880 67626 . + . ID=gene-AD39_RS15115;Name=ydfG;gbkey=Gene;gene=ydfG;gene_biotype=protein_coding;locus_tag=AD39_RS15115;old_locus_tag=AD39_1809 NZ_JJLH01000027.1 Protein Homology CDS 66880 67626 . + 0 ID=cds-WP_000636575.1;Parent=gene-AD39_RS15115;Dbxref=GenBank:WP_000636575.1;Name=WP_000636575.1;Ontology_term=GO:0016491;gbkey=CDS;gene=ydfG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416057.1;locus_tag=AD39_RS15115;product=bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG;protein_id=WP_000636575.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 67715 68401 . + . ID=gene-AD39_RS15110;Name=rspR;gbkey=Gene;gene=rspR;gene_biotype=protein_coding;gene_synonym=ydfH;locus_tag=AD39_RS15110;old_locus_tag=AD39_1810 NZ_JJLH01000027.1 Protein Homology CDS 67715 68401 . + 0 ID=cds-WP_000215549.1;Parent=gene-AD39_RS15110;Dbxref=GenBank:WP_000215549.1;Name=WP_000215549.1;gbkey=CDS;gene=rspR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310176.1;locus_tag=AD39_RS15110;product=DNA-binding transcriptional regulator rspR;protein_id=WP_000215549.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 68579 68782 . + . ID=gene-AD39_RS15105;Name=ydfZ;gbkey=Gene;gene=ydfZ;gene_biotype=protein_coding;locus_tag=AD39_RS15105;old_locus_tag=AD39_1811 NZ_JJLH01000027.1 Protein Homology CDS 68579 68782 . + 0 ID=cds-WP_000214712.1;Parent=gene-AD39_RS15105;Dbxref=GenBank:WP_000214712.1;Name=WP_000214712.1;gbkey=CDS;gene=ydfZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310177.1;locus_tag=AD39_RS15105;product=putative selenium delivery protein YdfZ;protein_id=WP_000214712.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 68818 70278 . - . ID=gene-AD39_RS15100;Name=ydfI;gbkey=Gene;gene=ydfI;gene_biotype=protein_coding;locus_tag=AD39_RS15100;old_locus_tag=AD39_1812 NZ_JJLH01000027.1 Protein Homology CDS 68818 70278 . - 0 ID=cds-WP_000527751.1;Parent=gene-AD39_RS15100;Dbxref=GenBank:WP_000527751.1;Name=WP_000527751.1;Ontology_term=GO:0016616;gbkey=CDS;gene=ydfI;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707435.1;locus_tag=AD39_RS15100;product=mannitol dehydrogenase family protein;protein_id=WP_000527751.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 70367 71734 . - . ID=gene-AD39_RS15095;Name=ydfJ;gbkey=Gene;gene=ydfJ;gene_biotype=protein_coding;locus_tag=AD39_RS15095;old_locus_tag=AD39_1813 NZ_JJLH01000027.1 Protein Homology CDS 70367 71734 . - 0 ID=cds-WP_000151243.1;Parent=gene-AD39_RS15095;Dbxref=GenBank:WP_000151243.1;Name=WP_000151243.1;gbkey=CDS;gene=ydfJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000582800.1;locus_tag=AD39_RS15095;product=MHS family MFS transporter YdfJ;protein_id=WP_000151243.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 71792 72811 . - . ID=gene-AD39_RS15090;Name=rspB;gbkey=Gene;gene=rspB;gene_biotype=protein_coding;locus_tag=AD39_RS15090;old_locus_tag=AD39_1814 NZ_JJLH01000027.1 Protein Homology CDS 71792 72811 . - 0 ID=cds-WP_000836057.1;Parent=gene-AD39_RS15090;Dbxref=GenBank:WP_000836057.1;Name=WP_000836057.1;Ontology_term=GO:0008270,GO:0016491;gbkey=CDS;gene=rspB;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416097.1;locus_tag=AD39_RS15090;product=Zn-dependent oxidoreductase;protein_id=WP_000836057.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 72823 74037 . - . ID=gene-AD39_RS15085;Name=rspA;gbkey=Gene;gene=rspA;gene_biotype=protein_coding;locus_tag=AD39_RS15085;old_locus_tag=AD39_1815 NZ_JJLH01000027.1 Protein Homology CDS 72823 74037 . - 0 ID=cds-WP_001295394.1;Parent=gene-AD39_RS15085;Dbxref=GenBank:WP_001295394.1;Name=WP_001295394.1;gbkey=CDS;gene=rspA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001625315.1;locus_tag=AD39_RS15085;product=starvation-sensing protein RspA;protein_id=WP_001295394.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 74243 74569 . - . ID=gene-AD39_RS15080;Name=ynfA;gbkey=Gene;gene=ynfA;gene_biotype=protein_coding;locus_tag=AD39_RS15080;old_locus_tag=AD39_1816 NZ_JJLH01000027.1 Protein Homology CDS 74243 74569 . - 0 ID=cds-WP_000598292.1;Parent=gene-AD39_RS15080;Dbxref=GenBank:WP_000598292.1;Name=WP_000598292.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ynfA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416099.1;locus_tag=AD39_RS15080;product=YnfA family protein;protein_id=WP_000598292.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 74704 75045 . + . ID=gene-AD39_RS15075;Name=ynfB;gbkey=Gene;gene=ynfB;gene_biotype=protein_coding;locus_tag=AD39_RS15075;old_locus_tag=AD39_1817 NZ_JJLH01000027.1 Protein Homology CDS 74704 75045 . + 0 ID=cds-WP_000705197.1;Parent=gene-AD39_RS15075;Dbxref=GenBank:WP_000705197.1;Name=WP_000705197.1;gbkey=CDS;gene=ynfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707472.1;locus_tag=AD39_RS15075;product=DUF1283 family protein;protein_id=WP_000705197.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 75080 75640 . + . ID=gene-AD39_RS15070;Name=speG;gbkey=Gene;gene=speG;gene_biotype=protein_coding;locus_tag=AD39_RS15070;old_locus_tag=AD39_1818 NZ_JJLH01000027.1 Protein Homology CDS 75080 75640 . + 0 ID=cds-WP_001138584.1;Parent=gene-AD39_RS15070;Dbxref=GenBank:WP_001138584.1;Name=WP_001138584.1;Ontology_term=GO:0008080;gbkey=CDS;gene=speG;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310317.1;locus_tag=AD39_RS15070;product=spermidine N1-acetyltransferase;protein_id=WP_001138584.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 75643 76353 . - . ID=gene-AD39_RS15065;Name=ynfC;gbkey=Gene;gene=ynfC;gene_biotype=protein_coding;locus_tag=AD39_RS15065;old_locus_tag=AD39_1819 NZ_JJLH01000027.1 Protein Homology CDS 75643 76353 . - 0 ID=cds-WP_001321287.1;Parent=gene-AD39_RS15065;Dbxref=GenBank:WP_001321287.1;Name=WP_001321287.1;Ontology_term=GO:0005886;gbkey=CDS;gene=ynfC;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416102.2;locus_tag=AD39_RS15065;product=YnfC family lipoprotein;protein_id=WP_001321287.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 76461 76766 . + . ID=gene-AD39_RS15060;Name=ynfD;gbkey=Gene;gene=ynfD;gene_biotype=protein_coding;locus_tag=AD39_RS15060;old_locus_tag=AD39_1820 NZ_JJLH01000027.1 Protein Homology CDS 76461 76766 . + 0 ID=cds-WP_032287556.1;Parent=gene-AD39_RS15060;Dbxref=GenBank:WP_032287556.1;Name=WP_032287556.1;gbkey=CDS;gene=ynfD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416103.2;locus_tag=AD39_RS15060;product=DUF1161 domain-containing protein;protein_id=WP_032287556.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 76965 79391 . + . ID=gene-AD39_RS15055;Name=ynfE;gbkey=Gene;gene=ynfE;gene_biotype=protein_coding;locus_tag=AD39_RS15055;old_locus_tag=AD39_1821 NZ_JJLH01000027.1 Protein Homology CDS 76965 79391 . + 0 ID=cds-WP_000041685.1;Parent=gene-AD39_RS15055;Dbxref=GenBank:WP_000041685.1;Name=WP_000041685.1;gbkey=CDS;gene=ynfE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416104.1;locus_tag=AD39_RS15055;product=selenate/tellurate reductase subunit YnfE;protein_id=WP_000041685.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 79452 81875 . + . ID=gene-AD39_RS15050;Name=ynfF;gbkey=Gene;gene=ynfF;gene_biotype=protein_coding;locus_tag=AD39_RS15050;old_locus_tag=AD39_1822 NZ_JJLH01000027.1 Protein Homology CDS 79452 81875 . + 0 ID=cds-WP_001340362.1;Parent=gene-AD39_RS15050;Dbxref=GenBank:WP_001340362.1;Name=WP_001340362.1;gbkey=CDS;gene=ynfF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416105.4;locus_tag=AD39_RS15050;product=selenate/tellurate reductase subunit YnfF;protein_id=WP_001340362.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 81886 82503 . + . ID=gene-AD39_RS15045;Name=ynfG;gbkey=Gene;gene=ynfG;gene_biotype=protein_coding;locus_tag=AD39_RS15045;old_locus_tag=AD39_1823 NZ_JJLH01000027.1 Protein Homology CDS 81886 82503 . + 0 ID=cds-WP_000213028.1;Parent=gene-AD39_RS15045;Dbxref=GenBank:WP_000213028.1;Name=WP_000213028.1;gbkey=CDS;gene=ynfG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000213046.1;locus_tag=AD39_RS15045;product=DMSO reductase like molybdoenzyme iron-sulfur subunit YnfG;protein_id=WP_000213028.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 82505 83359 . + . ID=gene-AD39_RS15040;Name=ynfH;gbkey=Gene;gene=ynfH;gene_biotype=protein_coding;locus_tag=AD39_RS15040;old_locus_tag=AD39_1824 NZ_JJLH01000027.1 Protein Homology CDS 82505 83359 . + 0 ID=cds-WP_000526503.1;Parent=gene-AD39_RS15040;Dbxref=GenBank:WP_000526503.1;Name=WP_000526503.1;gbkey=CDS;gene=ynfH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416107.1;locus_tag=AD39_RS15040;product=selenate reductase membrane anchor subunit YnfH;protein_id=WP_000526503.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 83402 84016 . + . ID=gene-AD39_RS15035;Name=dmsD;gbkey=Gene;gene=dmsD;gene_biotype=protein_coding;locus_tag=AD39_RS15035;old_locus_tag=AD39_1825 NZ_JJLH01000027.1 Protein Homology CDS 83402 84016 . + 0 ID=cds-WP_000148719.1;Parent=gene-AD39_RS15035;Dbxref=GenBank:WP_000148719.1;Name=WP_000148719.1;gbkey=CDS;gene=dmsD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707489.2;locus_tag=AD39_RS15035;product=Tat proofreading chaperone DmsD;protein_id=WP_000148719.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 84175 85467 . + . ID=gene-AD39_RS15030;Name=clcB;gbkey=Gene;gene=clcB;gene_biotype=protein_coding;locus_tag=AD39_RS15030;old_locus_tag=AD39_1826 NZ_JJLH01000027.1 Protein Homology CDS 84175 85467 . + 0 ID=cds-WP_071524606.1;Parent=gene-AD39_RS15030;Dbxref=GenBank:WP_071524606.1;Name=WP_071524606.1;Ontology_term=GO:0006821,GO:0010447,GO:0005247,GO:0016020;gbkey=CDS;gene=clcB;go_component=membrane|0016020||IEA;go_function=voltage-gated chloride channel activity|0005247||IEA;go_process=chloride transport|0006821||IEA,response to acidic pH|0010447||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001296088.1;locus_tag=AD39_RS15030;product=voltage-gated ClC-type chloride channel ClcB;protein_id=WP_071524606.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 85420 86115 . - . ID=gene-AD39_RS15025;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=AD39_RS15025;old_locus_tag=AD39_1827 NZ_JJLH01000027.1 Protein Homology CDS 85420 86115 . - 0 ID=cds-WP_000919231.1;Parent=gene-AD39_RS15025;Dbxref=GenBank:WP_000919231.1;Name=WP_000919231.1;Ontology_term=GO:0009102,GO:0000287,GO:0004141,GO:0005524;gbkey=CDS;gene=bioD;go_function=magnesium ion binding|0000287||IEA,dethiobiotin synthase activity|0004141||IEA,ATP binding|0005524||IEA;go_process=biotin biosynthetic process|0009102||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310326.2;locus_tag=AD39_RS15025;product=dethiobiotin synthase;protein_id=WP_000919231.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 86240 87460 . - . ID=gene-AD39_RS15020;Name=mlc;gbkey=Gene;gene=mlc;gene_biotype=protein_coding;gene_synonym=dgsA;locus_tag=AD39_RS15020;old_locus_tag=AD39_1828 NZ_JJLH01000027.1 Protein Homology CDS 86240 87460 . - 0 ID=cds-WP_000225276.1;Parent=gene-AD39_RS15020;Dbxref=GenBank:WP_000225276.1;Name=WP_000225276.1;Ontology_term=GO:0006355,GO:0003677,GO:0046872;gbkey=CDS;gene=mlc;go_function=DNA binding|0003677||IEA,metal ion binding|0046872||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310327.1;locus_tag=AD39_RS15020;product=sugar metabolism global transcriptional regulator Mlc;protein_id=WP_000225276.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 87595 88488 . - . ID=gene-AD39_RS15015;Name=ynfL;gbkey=Gene;gene=ynfL;gene_biotype=protein_coding;locus_tag=AD39_RS15015;old_locus_tag=AD39_1829 NZ_JJLH01000027.1 Protein Homology CDS 87595 88488 . - 0 ID=cds-WP_001019544.1;Parent=gene-AD39_RS15015;Dbxref=GenBank:WP_001019544.1;Name=WP_001019544.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;gene=ynfL;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310328.1;locus_tag=AD39_RS15015;product=LysR family transcriptional regulator;protein_id=WP_001019544.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 88595 89848 . + . ID=gene-AD39_RS15010;Name=ynfM;gbkey=Gene;gene=ynfM;gene_biotype=protein_coding;locus_tag=AD39_RS15010;old_locus_tag=AD39_1830 NZ_JJLH01000027.1 Protein Homology CDS 88595 89848 . + 0 ID=cds-WP_000091840.1;Parent=gene-AD39_RS15010;Dbxref=GenBank:WP_000091840.1;Name=WP_000091840.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;gene=ynfM;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416113.1;locus_tag=AD39_RS15010;product=MFS transporter;protein_id=WP_000091840.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 89897 90016 . - . ID=gene-AD39_RS30160;Name=AD39_RS30160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30160;old_locus_tag=AD39_1831 NZ_JJLH01000027.1 Protein Homology CDS 89897 90016 . - 0 ID=cds-WP_001299090.1;Parent=gene-AD39_RS30160;Dbxref=GenBank:WP_001299090.1;Name=WP_001299090.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF033695.1;locus_tag=AD39_RS30160;product=KPN_01571 family protein;protein_id=WP_001299090.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 90272 90580 . + . ID=gene-AD39_RS15005;Name=asr;gbkey=Gene;gene=asr;gene_biotype=protein_coding;locus_tag=AD39_RS15005;old_locus_tag=AD39_1832 NZ_JJLH01000027.1 Protein Homology CDS 90272 90580 . + 0 ID=cds-WP_212593040.1;Parent=gene-AD39_RS15005;Dbxref=GenBank:WP_212593040.1;Name=WP_212593040.1;gbkey=CDS;gene=asr;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310330.2;locus_tag=AD39_RS15005;product=acid resistance repetitive basic protein Asr;protein_id=WP_212593040.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 90673 90756 . + . ID=gene-AD39_RS0124250;Name=AD39_RS0124250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124250 NZ_JJLH01000027.1 Protein Homology CDS 90673 90756 . + 0 ID=cds-WP_000233090.1;Parent=gene-AD39_RS0124250;Dbxref=GenBank:WP_000233090.1;Name=WP_000233090.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165320.1;locus_tag=AD39_RS0124250;product=hypothetical protein;protein_id=WP_000233090.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 90856 91677 . + . ID=gene-AD39_RS15000;Name=ydgD;gbkey=Gene;gene=ydgD;gene_biotype=protein_coding;locus_tag=AD39_RS15000;old_locus_tag=AD39_1833 NZ_JJLH01000027.1 Protein Homology CDS 90856 91677 . + 0 ID=cds-WP_001260849.1;Parent=gene-AD39_RS15000;Dbxref=GenBank:WP_001260849.1;Name=WP_001260849.1;Ontology_term=GO:0006508,GO:0004252,GO:0008233,GO:0008236;gbkey=CDS;gene=ydgD;go_function=serine-type endopeptidase activity|0004252||IEA,peptidase activity|0008233||IEA,serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416115.1;locus_tag=AD39_RS15000;product=trypsin-like serine peptidase;protein_id=WP_001260849.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 91716 92045 . - . ID=gene-AD39_RS14995;Name=mdtI;gbkey=Gene;gene=mdtI;gene_biotype=protein_coding;locus_tag=AD39_RS14995;old_locus_tag=AD39_1834 NZ_JJLH01000027.1 Protein Homology CDS 91716 92045 . - 0 ID=cds-WP_000046661.1;Parent=gene-AD39_RS14995;Dbxref=GenBank:WP_000046661.1;Name=WP_000046661.1;gbkey=CDS;gene=mdtI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310332.1;locus_tag=AD39_RS14995;product=multidrug/spermidine efflux SMR transporter subunit MdtI;protein_id=WP_000046661.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 92032 92397 . - . ID=gene-AD39_RS14990;Name=mdtJ;gbkey=Gene;gene=mdtJ;gene_biotype=protein_coding;locus_tag=AD39_RS14990;old_locus_tag=AD39_1835 NZ_JJLH01000027.1 Protein Homology CDS 92032 92397 . - 0 ID=cds-WP_000276149.1;Parent=gene-AD39_RS14990;Dbxref=GenBank:WP_000276149.1;Name=WP_000276149.1;Ontology_term=GO:0015848,GO:0015606,GO:0016020;gbkey=CDS;gene=mdtJ;go_component=membrane|0016020||IEA;go_function=spermidine transmembrane transporter activity|0015606||IEA;go_process=spermidine transport|0015848||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310333.1;locus_tag=AD39_RS14990;product=multidrug/spermidine efflux SMR transporter subunit MdtJ;protein_id=WP_000276149.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 92504 92674 . - . ID=gene-AD39_RS30165;Name=AD39_RS30165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30165 NZ_JJLH01000027.1 Protein Homology CDS 92504 92674 . - 0 ID=cds-WP_001303517.1;Parent=gene-AD39_RS30165;Dbxref=GenBank:WP_001303517.1;Name=WP_001303517.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001334396.1;locus_tag=AD39_RS30165;product=hypothetical protein;protein_id=WP_001303517.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 92809 93843 . + . ID=gene-AD39_RS14985;Name=tqsA;gbkey=Gene;gene=tqsA;gene_biotype=protein_coding;locus_tag=AD39_RS14985;old_locus_tag=AD39_1836 NZ_JJLH01000027.1 Protein Homology CDS 92809 93843 . + 0 ID=cds-WP_001118227.1;Parent=gene-AD39_RS14985;Dbxref=GenBank:WP_001118227.1;Name=WP_001118227.1;gbkey=CDS;gene=tqsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416118.1;locus_tag=AD39_RS14985;product=AI-2 transporter TqsA;protein_id=WP_001118227.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 93868 95256 . - . ID=gene-AD39_RS14980;Name=pntB;gbkey=Gene;gene=pntB;gene_biotype=protein_coding;locus_tag=AD39_RS14980;old_locus_tag=AD39_1837 NZ_JJLH01000027.1 Protein Homology CDS 93868 95256 . - 0 ID=cds-WP_000014036.1;Parent=gene-AD39_RS14980;Dbxref=GenBank:WP_000014036.1;Name=WP_000014036.1;Ontology_term=GO:0008750,GO:0050661,GO:0016020;gbkey=CDS;gene=pntB;go_component=membrane|0016020||IEA;go_function=proton-translocating NAD(P)+ transhydrogenase activity|0008750||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000014033.1;locus_tag=AD39_RS14980;product=Re/Si-specific NAD(P)(+) transhydrogenase subunit beta;protein_id=WP_000014036.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 95267 96799 . - . ID=gene-AD39_RS14975;Name=pntA;gbkey=Gene;gene=pntA;gene_biotype=protein_coding;locus_tag=AD39_RS14975;old_locus_tag=AD39_1838 NZ_JJLH01000027.1 Protein Homology CDS 95267 96799 . - 0 ID=cds-WP_032283247.1;Parent=gene-AD39_RS14975;Dbxref=GenBank:WP_032283247.1;Name=WP_032283247.1;Ontology_term=GO:1902600,GO:0008750;gbkey=CDS;gene=pntA;go_function=proton-translocating NAD(P)+ transhydrogenase activity|0008750||IEA;go_process=proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416120.1;locus_tag=AD39_RS14975;product=Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha;protein_id=WP_032283247.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 97323 98267 . + . ID=gene-AD39_RS14970;Name=ydgH;gbkey=Gene;gene=ydgH;gene_biotype=protein_coding;locus_tag=AD39_RS14970;old_locus_tag=AD39_1839 NZ_JJLH01000027.1 Protein Homology CDS 97323 98267 . + 0 ID=cds-WP_000769322.1;Parent=gene-AD39_RS14970;Dbxref=GenBank:WP_000769322.1;Name=WP_000769322.1;gbkey=CDS;gene=ydgH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310337.1;locus_tag=AD39_RS14970;product=DUF1471 family protein YdgH;protein_id=WP_000769322.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 98453 99835 . + . ID=gene-AD39_RS14965;Name=ydgI;gbkey=Gene;gene=ydgI;gene_biotype=protein_coding;locus_tag=AD39_RS14965;old_locus_tag=AD39_1840 NZ_JJLH01000027.1 Protein Homology CDS 98453 99835 . + 0 ID=cds-WP_000412379.1;Parent=gene-AD39_RS14965;Dbxref=GenBank:WP_000412379.1;Name=WP_000412379.1;gbkey=CDS;gene=ydgI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416122.1;locus_tag=AD39_RS14965;product=amino acid permease;protein_id=WP_000412379.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 99872 100594 . + . ID=gene-AD39_RS14960;Name=folM;gbkey=Gene;gene=folM;gene_biotype=protein_coding;locus_tag=AD39_RS14960;old_locus_tag=AD39_1841 NZ_JJLH01000027.1 Protein Homology CDS 99872 100594 . + 0 ID=cds-WP_000513678.1;Parent=gene-AD39_RS14960;Dbxref=GenBank:WP_000513678.1;Name=WP_000513678.1;Ontology_term=GO:0016491;gbkey=CDS;gene=folM;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310339.1;locus_tag=AD39_RS14960;product=dihydromonapterin reductase;protein_id=WP_000513678.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 100591 100926 . - . ID=gene-AD39_RS14955;Name=ydgC;gbkey=Gene;gene=ydgC;gene_biotype=protein_coding;locus_tag=AD39_RS14955;old_locus_tag=AD39_1842 NZ_JJLH01000027.1 Protein Homology CDS 100591 100926 . - 0 ID=cds-WP_000524868.1;Parent=gene-AD39_RS14955;Dbxref=GenBank:WP_000524868.1;Name=WP_000524868.1;gbkey=CDS;gene=ydgC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310340.1;locus_tag=AD39_RS14955;product=GlpM family protein;protein_id=WP_000524868.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 101055 101774 . + . ID=gene-AD39_RS14950;Name=rstA;gbkey=Gene;gene=rstA;gene_biotype=protein_coding;locus_tag=AD39_RS14950;old_locus_tag=AD39_1843 NZ_JJLH01000027.1 Protein Homology CDS 101055 101774 . + 0 ID=cds-WP_001092505.1;Parent=gene-AD39_RS14950;Dbxref=GenBank:WP_001092505.1;Name=WP_001092505.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=rstA;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416125.2;locus_tag=AD39_RS14950;product=two-component system response regulator RstA;protein_id=WP_001092505.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 101778 103079 . + . ID=gene-AD39_RS14945;Name=rstB;gbkey=Gene;gene=rstB;gene_biotype=protein_coding;locus_tag=AD39_RS14945;old_locus_tag=AD39_1844 NZ_JJLH01000027.1 Protein Homology CDS 101778 103079 . + 0 ID=cds-WP_001382903.1;Parent=gene-AD39_RS14945;Dbxref=GenBank:WP_001382903.1;Name=WP_001382903.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=rstB;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310342.2;locus_tag=AD39_RS14945;product=two-component system sensor histidine kinase RstB;protein_id=WP_001382903.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 103155 104084 . + . ID=gene-AD39_RS14940;Name=tus;gbkey=Gene;gene=tus;gene_biotype=protein_coding;locus_tag=AD39_RS14940;old_locus_tag=AD39_1845 NZ_JJLH01000027.1 Protein Homology CDS 103155 104084 . + 0 ID=cds-WP_000135186.1;Parent=gene-AD39_RS14940;Dbxref=GenBank:WP_000135186.1;Name=WP_000135186.1;Ontology_term=GO:0006274,GO:0003677,GO:0005737;gbkey=CDS;gene=tus;go_component=cytoplasm|0005737||IEA;go_function=DNA binding|0003677||IEA;go_process=DNA replication termination|0006274||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707509.2;locus_tag=AD39_RS14940;product=DNA replication terminus site-binding protein;protein_id=WP_000135186.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 104081 105484 . - . ID=gene-AD39_RS14935;Name=fumC;gbkey=Gene;gene=fumC;gene_biotype=protein_coding;locus_tag=AD39_RS14935;old_locus_tag=AD39_1846 NZ_JJLH01000027.1 Protein Homology CDS 104081 105484 . - 0 ID=cds-WP_001099108.1;Parent=gene-AD39_RS14935;Dbxref=GenBank:WP_001099108.1;Name=WP_001099108.1;Ontology_term=GO:0006106,GO:0004333,GO:0045239;gbkey=CDS;gene=fumC;go_component=tricarboxylic acid cycle heteromeric enzyme complex|0045239||IEA;go_function=fumarate hydratase activity|0004333||IEA;go_process=fumarate metabolic process|0006106||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310344.1;locus_tag=AD39_RS14935;product=class II fumarate hydratase;protein_id=WP_001099108.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 105627 107273 . - . ID=gene-AD39_RS14930;Name=fumB;gbkey=Gene;gene=fumB;gene_biotype=protein_coding;locus_tag=AD39_RS14930;old_locus_tag=AD39_1847 NZ_JJLH01000027.1 Protein Homology CDS 105627 107273 . - 0 ID=cds-WP_032283249.1;Parent=gene-AD39_RS14930;Dbxref=GenBank:WP_032283249.1;Name=WP_032283249.1;gbkey=CDS;gene=fumB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000066594.1;locus_tag=AD39_RS14930;product=class I fumarate hydratase;protein_id=WP_032283249.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 107472 108647 . + . ID=gene-AD39_RS14925;Name=manA;gbkey=Gene;gene=manA;gene_biotype=protein_coding;locus_tag=AD39_RS14925;old_locus_tag=AD39_1848 NZ_JJLH01000027.1 Protein Homology CDS 107472 108647 . + 0 ID=cds-WP_001170701.1;Parent=gene-AD39_RS14925;Dbxref=GenBank:WP_001170701.1;Name=WP_001170701.1;Ontology_term=GO:0009298,GO:0004476,GO:0008270;gbkey=CDS;gene=manA;go_function=mannose-6-phosphate isomerase activity|0004476||IEA,zinc ion binding|0008270||IEA;go_process=GDP-mannose biosynthetic process|0009298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416130.3;locus_tag=AD39_RS14925;product=mannose-6-phosphate isomerase;protein_id=WP_001170701.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 108748 110256 . + . ID=gene-AD39_RS14920;Name=ydgA;gbkey=Gene;gene=ydgA;gene_biotype=protein_coding;locus_tag=AD39_RS14920;old_locus_tag=AD39_1849 NZ_JJLH01000027.1 Protein Homology CDS 108748 110256 . + 0 ID=cds-WP_001043332.1;Parent=gene-AD39_RS14920;Dbxref=GenBank:WP_001043332.1;Name=WP_001043332.1;gbkey=CDS;gene=ydgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416131.1;locus_tag=AD39_RS14920;product=YdgA family protein;protein_id=WP_001043332.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 110482 111747 . - . ID=gene-AD39_RS14915;Name=uidC;gbkey=Gene;gene=uidC;gene_biotype=protein_coding;locus_tag=AD39_RS14915;old_locus_tag=AD39_1850 NZ_JJLH01000027.1 Protein Homology CDS 110482 111747 . - 0 ID=cds-WP_001227034.1;Parent=gene-AD39_RS14915;Dbxref=GenBank:WP_001227034.1;Name=WP_001227034.1;gbkey=CDS;gene=uidC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416132.2;locus_tag=AD39_RS14915;product=glucuronide uptake porin UidC;protein_id=WP_001227034.1;transl_table=11 NZ_JJLH01000027.1 RefSeq pseudogene 111786 113159 . - . ID=gene-AD39_RS14910;Name=uidB;gbkey=Gene;gene=uidB;gene_biotype=pseudogene;locus_tag=AD39_RS14910;old_locus_tag=AD39_1851;pseudo=true NZ_JJLH01000027.1 Protein Homology CDS 111786 113159 . - 0 ID=cds-AD39_RS14910;Parent=gene-AD39_RS14910;Note=internal stop;Ontology_term=GO:0006810,GO:0022857,GO:0016020;gbkey=CDS;gene=uidB;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416133.1;locus_tag=AD39_RS14910;product=glucuronide transporter;pseudo=true;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 113156 114967 . - . ID=gene-AD39_RS14905;Name=uidA;gbkey=Gene;gene=uidA;gene_biotype=protein_coding;locus_tag=AD39_RS14905;old_locus_tag=AD39_1852 NZ_JJLH01000027.1 Protein Homology CDS 113156 114967 . - 0 ID=cds-WP_000945878.1;Parent=gene-AD39_RS14905;Dbxref=GenBank:WP_000945878.1;Name=WP_000945878.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=uidA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416134.1;locus_tag=AD39_RS14905;product=beta-glucuronidase;protein_id=WP_000945878.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 115356 115946 . - . ID=gene-AD39_RS14900;Name=uidR;gbkey=Gene;gene=uidR;gene_biotype=protein_coding;locus_tag=AD39_RS14900;old_locus_tag=AD39_1853 NZ_JJLH01000027.1 Protein Homology CDS 115356 115946 . - 0 ID=cds-WP_000969095.1;Parent=gene-AD39_RS14900;Dbxref=GenBank:WP_000969095.1;Name=WP_000969095.1;gbkey=CDS;gene=uidR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310353.1;locus_tag=AD39_RS14900;product=DNA-binding transcriptional regulator UidR;protein_id=WP_000969095.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 116175 116942 . - . ID=gene-AD39_RS14895;Name=hdhA;gbkey=Gene;gene=hdhA;gene_biotype=protein_coding;locus_tag=AD39_RS14895;old_locus_tag=AD39_1854 NZ_JJLH01000027.1 Protein Homology CDS 116175 116942 . - 0 ID=cds-WP_000483362.1;Parent=gene-AD39_RS14895;Dbxref=GenBank:WP_000483362.1;Name=WP_000483362.1;gbkey=CDS;gene=hdhA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310354.1;locus_tag=AD39_RS14895;product=7-alpha-hydroxysteroid dehydrogenase;protein_id=WP_000483362.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 117054 118082 . - . ID=gene-AD39_RS14890;Name=malI;gbkey=Gene;gene=malI;gene_biotype=protein_coding;locus_tag=AD39_RS14890;old_locus_tag=AD39_1855 NZ_JJLH01000027.1 Protein Homology CDS 117054 118082 . - 0 ID=cds-WP_000179513.1;Parent=gene-AD39_RS14890;Dbxref=GenBank:WP_000179513.1;Name=WP_000179513.1;gbkey=CDS;gene=malI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310355.1;locus_tag=AD39_RS14890;product=mal regulon transcriptional regulator MalI;protein_id=WP_000179513.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 118257 119849 . + . ID=gene-AD39_RS14885;Name=malX;gbkey=Gene;gene=malX;gene_biotype=protein_coding;locus_tag=AD39_RS14885;old_locus_tag=AD39_1856 NZ_JJLH01000027.1 Protein Homology CDS 118257 119849 . + 0 ID=cds-WP_000125627.1;Parent=gene-AD39_RS14885;Dbxref=GenBank:WP_000125627.1;Name=WP_000125627.1;gbkey=CDS;gene=malX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416138.1;locus_tag=AD39_RS14885;product=PTS maltose transporter subunit IICB;protein_id=WP_000125627.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 119859 121031 . + . ID=gene-AD39_RS14880;Name=malY;gbkey=Gene;gene=malY;gene_biotype=protein_coding;locus_tag=AD39_RS14880;old_locus_tag=AD39_1857 NZ_JJLH01000027.1 Protein Homology CDS 119859 121031 . + 0 ID=cds-WP_000459406.1;Parent=gene-AD39_RS14880;Dbxref=GenBank:WP_000459406.1;Name=WP_000459406.1;gbkey=CDS;gene=malY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707522.1;locus_tag=AD39_RS14880;product=bifunctional maltose regulon transcriptional repressor/cystathionine beta-lyase MalY;protein_id=WP_000459406.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 121135 122136 . + . ID=gene-AD39_RS14875;Name=add;gbkey=Gene;gene=add;gene_biotype=protein_coding;locus_tag=AD39_RS14875;old_locus_tag=AD39_1858 NZ_JJLH01000027.1 Protein Homology CDS 121135 122136 . + 0 ID=cds-WP_000567490.1;Parent=gene-AD39_RS14875;Dbxref=GenBank:WP_000567490.1;Name=WP_000567490.1;Ontology_term=GO:0009168,GO:0004000;gbkey=CDS;gene=add;go_function=adenosine deaminase activity|0004000||IEA;go_process=purine ribonucleoside monophosphate biosynthetic process|0009168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416140.1;locus_tag=AD39_RS14875;product=adenosine deaminase;protein_id=WP_000567490.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 122171 123211 . - . ID=gene-AD39_RS14870;Name=ydgJ;gbkey=Gene;gene=ydgJ;gene_biotype=protein_coding;locus_tag=AD39_RS14870;old_locus_tag=AD39_1859 NZ_JJLH01000027.1 Protein Homology CDS 122171 123211 . - 0 ID=cds-WP_001282516.1;Parent=gene-AD39_RS14870;Dbxref=GenBank:WP_001282516.1;Name=WP_001282516.1;gbkey=CDS;gene=ydgJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310359.2;locus_tag=AD39_RS14870;product=oxidoreductase;protein_id=WP_001282516.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 123454 123579 . + . ID=gene-AD39_RS0124255;Name=blr;gbkey=Gene;gene=blr;gene_biotype=protein_coding;locus_tag=AD39_RS0124255 NZ_JJLH01000027.1 Protein Homology CDS 123454 123579 . + 0 ID=cds-WP_001300888.1;Parent=gene-AD39_RS0124255;Dbxref=GenBank:WP_001300888.1;Name=WP_001300888.1;gbkey=CDS;gene=blr;inference=COORDINATES: similar to AA sequence:RefSeq:YP_025303.1;locus_tag=AD39_RS0124255;product=division septum protein Blr;protein_id=WP_001300888.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 123852 124067 . + . ID=gene-AD39_RS14865;Name=ydgT;gbkey=Gene;gene=ydgT;gene_biotype=protein_coding;locus_tag=AD39_RS14865;old_locus_tag=AD39_1860 NZ_JJLH01000027.1 Protein Homology CDS 123852 124067 . + 0 ID=cds-WP_000217950.1;Parent=gene-AD39_RS14865;Dbxref=GenBank:WP_000217950.1;Name=WP_000217950.1;gbkey=CDS;gene=ydgT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310361.1;locus_tag=AD39_RS14865;product=transcription modulator YdgT;protein_id=WP_000217950.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 124153 124593 . + . ID=gene-AD39_RS14860;Name=ydgK;gbkey=Gene;gene=ydgK;gene_biotype=protein_coding;locus_tag=AD39_RS14860;old_locus_tag=AD39_1861 NZ_JJLH01000027.1 Protein Homology CDS 124153 124593 . + 0 ID=cds-WP_000214176.1;Parent=gene-AD39_RS14860;Dbxref=GenBank:WP_000214176.1;Name=WP_000214176.1;gbkey=CDS;gene=ydgK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707526.2;locus_tag=AD39_RS14860;product=DUF2569 domain-containing protein;protein_id=WP_000214176.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 124670 125251 . + . ID=gene-AD39_RS14855;Name=rsxA;gbkey=Gene;gene=rsxA;gene_biotype=protein_coding;locus_tag=AD39_RS14855;old_locus_tag=AD39_1862 NZ_JJLH01000027.1 Protein Homology CDS 124670 125251 . + 0 ID=cds-WP_000133189.1;Parent=gene-AD39_RS14855;Dbxref=GenBank:WP_000133189.1;Name=WP_000133189.1;Ontology_term=GO:0022900,GO:0016020;gbkey=CDS;gene=rsxA;go_component=membrane|0016020||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017456621.1;locus_tag=AD39_RS14855;product=electron transport complex subunit RsxA;protein_id=WP_000133189.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 125251 125829 . + . ID=gene-AD39_RS14850;Name=rsxB;gbkey=Gene;gene=rsxB;gene_biotype=protein_coding;locus_tag=AD39_RS14850;old_locus_tag=AD39_1863 NZ_JJLH01000027.1 Protein Homology CDS 125251 125829 . + 0 ID=cds-WP_000991809.1;Parent=gene-AD39_RS14850;Dbxref=GenBank:WP_000991809.1;Name=WP_000991809.1;Ontology_term=GO:0022900,GO:0009055,GO:0051536;gbkey=CDS;gene=rsxB;go_function=electron transfer activity|0009055||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310364.1;locus_tag=AD39_RS14850;product=electron transport complex subunit RsxB;protein_id=WP_000991809.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 125822 127948 . + . ID=gene-AD39_RS14845;Name=rsxC;gbkey=Gene;gene=rsxC;gene_biotype=protein_coding;locus_tag=AD39_RS14845;old_locus_tag=AD39_1864 NZ_JJLH01000027.1 Protein Homology CDS 125822 127948 . + 0 ID=cds-WP_032217172.1;Parent=gene-AD39_RS14845;Dbxref=GenBank:WP_032217172.1;Name=WP_032217172.1;Ontology_term=GO:0009055,GO:0051539,GO:0016020;gbkey=CDS;gene=rsxC;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416146.1;locus_tag=AD39_RS14845;product=electron transport complex subunit RsxC;protein_id=WP_032217172.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 127949 129007 . + . ID=gene-AD39_RS14840;Name=rsxD;gbkey=Gene;gene=rsxD;gene_biotype=protein_coding;locus_tag=AD39_RS14840;old_locus_tag=AD39_1865 NZ_JJLH01000027.1 Protein Homology CDS 127949 129007 . + 0 ID=cds-WP_000231922.1;Parent=gene-AD39_RS14840;Dbxref=GenBank:WP_000231922.1;Name=WP_000231922.1;Ontology_term=GO:0022900,GO:0055085,GO:0016020;gbkey=CDS;gene=rsxD;go_component=membrane|0016020||IEA;go_process=electron transport chain|0022900||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310366.1;locus_tag=AD39_RS14840;product=electron transport complex subunit RsxD;protein_id=WP_000231922.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 129011 129631 . + . ID=gene-AD39_RS14835;Name=rsxG;gbkey=Gene;gene=rsxG;gene_biotype=protein_coding;locus_tag=AD39_RS14835;old_locus_tag=AD39_1866 NZ_JJLH01000027.1 Protein Homology CDS 129011 129631 . + 0 ID=cds-WP_000920778.1;Parent=gene-AD39_RS14835;Dbxref=GenBank:WP_000920778.1;Name=WP_000920778.1;Ontology_term=GO:0022900,GO:0009055,GO:0010181,GO:0016020;gbkey=CDS;gene=rsxG;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,FMN binding|0010181||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416148.1;locus_tag=AD39_RS14835;product=electron transport complex subunit RsxG;protein_id=WP_000920778.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 129635 130330 . + . ID=gene-AD39_RS14830;Name=rsxE;gbkey=Gene;gene=rsxE;gene_biotype=protein_coding;locus_tag=AD39_RS14830;old_locus_tag=AD39_1867 NZ_JJLH01000027.1 Protein Homology CDS 129635 130330 . + 0 ID=cds-WP_001289664.1;Parent=gene-AD39_RS14830;Dbxref=GenBank:WP_001289664.1;Name=WP_001289664.1;gbkey=CDS;gene=rsxE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416149.1;locus_tag=AD39_RS14830;product=electron transport complex subunit RsxE;protein_id=WP_001289664.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 130330 130965 . + . ID=gene-AD39_RS14825;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;locus_tag=AD39_RS14825;old_locus_tag=AD39_1868 NZ_JJLH01000027.1 Protein Homology CDS 130330 130965 . + 0 ID=cds-WP_001373638.1;Parent=gene-AD39_RS14825;Dbxref=GenBank:WP_001373638.1;Name=WP_001373638.1;Ontology_term=GO:0006284,GO:0003906;gbkey=CDS;gene=nth;go_function=DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416150.1;locus_tag=AD39_RS14825;product=endonuclease III;protein_id=WP_001373638.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 131576 133078 . + . ID=gene-AD39_RS14820;Name=dtpA;gbkey=Gene;gene=dtpA;gene_biotype=protein_coding;locus_tag=AD39_RS14820;old_locus_tag=AD39_1869 NZ_JJLH01000027.1 Protein Homology CDS 131576 133078 . + 0 ID=cds-WP_000100931.1;Parent=gene-AD39_RS14820;Dbxref=GenBank:WP_000100931.1;Name=WP_000100931.1;Ontology_term=GO:0015833,GO:0055085,GO:1904680,GO:0016020;gbkey=CDS;gene=dtpA;go_component=membrane|0016020||IEA;go_function=peptide transmembrane transporter activity|1904680||IEA;go_process=peptide transport|0015833||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416151.1;locus_tag=AD39_RS14820;product=dipeptide/tripeptide permease DtpA;protein_id=WP_000100931.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 133184 133789 . + . ID=gene-AD39_RS14815;Name=gstA;gbkey=Gene;gene=gstA;gene_biotype=protein_coding;locus_tag=AD39_RS14815;old_locus_tag=AD39_1870 NZ_JJLH01000027.1 Protein Homology CDS 133184 133789 . + 0 ID=cds-WP_000765762.1;Parent=gene-AD39_RS14815;Dbxref=GenBank:WP_000765762.1;Name=WP_000765762.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;gene=gstA;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310371.1;locus_tag=AD39_RS14815;product=glutathione transferase GstA;protein_id=WP_000765762.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 133833 134696 . - . ID=gene-AD39_RS14810;Name=pdxY;gbkey=Gene;gene=pdxY;gene_biotype=protein_coding;locus_tag=AD39_RS14810;old_locus_tag=AD39_1871 NZ_JJLH01000027.1 Protein Homology CDS 133833 134696 . - 0 ID=cds-WP_001307229.1;Parent=gene-AD39_RS14810;Dbxref=GenBank:WP_001307229.1;Name=WP_001307229.1;Ontology_term=GO:0009443,GO:0008478;gbkey=CDS;gene=pdxY;go_function=pyridoxal kinase activity|0008478||IEA;go_process=pyridoxal 5'-phosphate salvage|0009443||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416153.1;locus_tag=AD39_RS14810;product=pyridoxal kinase;protein_id=WP_001307229.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 134755 136029 . - . ID=gene-AD39_RS14805;Name=tyrS;gbkey=Gene;gene=tyrS;gene_biotype=protein_coding;locus_tag=AD39_RS14805;old_locus_tag=AD39_1872 NZ_JJLH01000027.1 Protein Homology CDS 134755 136029 . - 0 ID=cds-WP_001367866.1;Parent=gene-AD39_RS14805;Dbxref=GenBank:WP_001367866.1;Name=WP_001367866.1;Ontology_term=GO:0006437,GO:0000166,GO:0004831,GO:0005524;gbkey=CDS;gene=tyrS;go_function=nucleotide binding|0000166||IEA,tyrosine-tRNA ligase activity|0004831||IEA,ATP binding|0005524||IEA;go_process=tyrosyl-tRNA aminoacylation|0006437||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310373.1;locus_tag=AD39_RS14805;product=tyrosine--tRNA ligase;protein_id=WP_001367866.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 136158 136814 . - . ID=gene-AD39_RS14800;Name=pdxH;gbkey=Gene;gene=pdxH;gene_biotype=protein_coding;locus_tag=AD39_RS14800;old_locus_tag=AD39_1873 NZ_JJLH01000027.1 Protein Homology CDS 136158 136814 . - 0 ID=cds-WP_001282313.1;Parent=gene-AD39_RS14800;Dbxref=GenBank:WP_001282313.1;Name=WP_001282313.1;Ontology_term=GO:0008615,GO:0004733,GO:0010181;gbkey=CDS;gene=pdxH;go_function=pyridoxamine phosphate oxidase activity|0004733||IEA,FMN binding|0010181||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005127173.1;locus_tag=AD39_RS14800;product=pyridoxamine 5'-phosphate oxidase;protein_id=WP_001282313.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 136873 137202 . - . ID=gene-AD39_RS14795;Name=mliC;gbkey=Gene;gene=mliC;gene_biotype=protein_coding;locus_tag=AD39_RS14795;old_locus_tag=AD39_1874 NZ_JJLH01000027.1 Protein Homology CDS 136873 137202 . - 0 ID=cds-WP_000061968.1;Parent=gene-AD39_RS14795;Dbxref=GenBank:WP_000061968.1;Name=WP_000061968.1;gbkey=CDS;gene=mliC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416156.4;locus_tag=AD39_RS14795;product=C-type lysozyme inhibitor;protein_id=WP_000061968.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 137300 138409 . - . ID=gene-AD39_RS14790;Name=anmK;gbkey=Gene;gene=anmK;gene_biotype=protein_coding;locus_tag=AD39_RS14790;old_locus_tag=AD39_1875 NZ_JJLH01000027.1 Protein Homology CDS 137300 138409 . - 0 ID=cds-WP_000835077.1;Parent=gene-AD39_RS14790;Dbxref=GenBank:WP_000835077.1;Name=WP_000835077.1;gbkey=CDS;gene=anmK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416157.1;locus_tag=AD39_RS14790;product=anhydro-N-acetylmuramic acid kinase;protein_id=WP_000835077.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 138683 139150 . + . ID=gene-AD39_RS14785;Name=slyB;gbkey=Gene;gene=slyB;gene_biotype=protein_coding;locus_tag=AD39_RS14785;old_locus_tag=AD39_1876 NZ_JJLH01000027.1 Protein Homology CDS 138683 139150 . + 0 ID=cds-WP_000597196.1;Parent=gene-AD39_RS14785;Dbxref=GenBank:WP_000597196.1;Name=WP_000597196.1;gbkey=CDS;gene=slyB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310377.1;locus_tag=AD39_RS14785;product=outer membrane lipoprotein SlyB;protein_id=WP_000597196.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 139197 139631 . - . ID=gene-AD39_RS14780;Name=slyA;gbkey=Gene;gene=slyA;gene_biotype=protein_coding;locus_tag=AD39_RS14780;old_locus_tag=AD39_1877 NZ_JJLH01000027.1 Protein Homology CDS 139197 139631 . - 0 ID=cds-WP_001296943.1;Parent=gene-AD39_RS14780;Dbxref=GenBank:WP_001296943.1;Name=WP_001296943.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=slyA;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416159.2;locus_tag=AD39_RS14780;product=transcriptional regulator SlyA;protein_id=WP_001296943.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 139832 140068 . + . ID=gene-AD39_RS14775;Name=ydhI;gbkey=Gene;gene=ydhI;gene_biotype=protein_coding;locus_tag=AD39_RS14775;old_locus_tag=AD39_1879 NZ_JJLH01000027.1 Protein Homology CDS 139832 140068 . + 0 ID=cds-WP_000670998.1;Parent=gene-AD39_RS14775;Dbxref=GenBank:WP_000670998.1;Name=WP_000670998.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ydhI;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310379.1;locus_tag=AD39_RS14775;product=DUF1656 domain-containing protein;protein_id=WP_000670998.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 140071 140928 . + . ID=gene-AD39_RS14770;Name=ydhJ;gbkey=Gene;gene=ydhJ;gene_biotype=protein_coding;locus_tag=AD39_RS14770;old_locus_tag=AD39_1880 NZ_JJLH01000027.1 Protein Homology CDS 140071 140928 . + 0 ID=cds-WP_001296942.1;Parent=gene-AD39_RS14770;Dbxref=GenBank:WP_001296942.1;Name=WP_001296942.1;Ontology_term=GO:0006810,GO:0005215,GO:0016020;gbkey=CDS;gene=ydhJ;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310380.2;locus_tag=AD39_RS14770;product=efflux RND transporter periplasmic adaptor subunit;protein_id=WP_001296942.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 140928 142940 . + . ID=gene-AD39_RS14765;Name=ydhK;gbkey=Gene;gene=ydhK;gene_biotype=protein_coding;locus_tag=AD39_RS14765;old_locus_tag=AD39_1881 NZ_JJLH01000027.1 Protein Homology CDS 140928 142940 . + 0 ID=cds-WP_000994280.1;Parent=gene-AD39_RS14765;Dbxref=GenBank:WP_000994280.1;Name=WP_000994280.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;gene=ydhK;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416162.1;locus_tag=AD39_RS14765;product=FUSC family protein;protein_id=WP_000994280.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 142941 143462 . - . ID=gene-AD39_RS14760;Name=sodC;gbkey=Gene;gene=sodC;gene_biotype=protein_coding;locus_tag=AD39_RS14760;old_locus_tag=AD39_1882 NZ_JJLH01000027.1 Protein Homology CDS 142941 143462 . - 0 ID=cds-WP_001296937.1;Parent=gene-AD39_RS14760;Dbxref=GenBank:WP_001296937.1;Name=WP_001296937.1;Ontology_term=GO:0004784;gbkey=CDS;gene=sodC;go_function=superoxide dismutase activity|0004784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310382.1;locus_tag=AD39_RS14760;product=superoxide dismutase [Cu-Zn] SodC;protein_id=WP_001296937.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 143543 144439 . - . ID=gene-AD39_RS14755;Name=ydhF;gbkey=Gene;gene=ydhF;gene_biotype=protein_coding;locus_tag=AD39_RS14755;old_locus_tag=AD39_1883 NZ_JJLH01000027.1 Protein Homology CDS 143543 144439 . - 0 ID=cds-WP_000250661.1;Parent=gene-AD39_RS14755;Dbxref=GenBank:WP_000250661.1;Name=WP_000250661.1;Ontology_term=GO:0016491,GO:0050661;gbkey=CDS;gene=ydhF;go_function=oxidoreductase activity|0016491||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_025305.1;locus_tag=AD39_RS14755;product=aldo/keto reductase;protein_id=WP_000250661.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 144488 144727 . - . ID=gene-AD39_RS0124265;Name=ydhL;gbkey=Gene;gene=ydhL;gene_biotype=protein_coding;locus_tag=AD39_RS0124265 NZ_JJLH01000027.1 Protein Homology CDS 144488 144727 . - 0 ID=cds-WP_000840481.1;Parent=gene-AD39_RS0124265;Dbxref=GenBank:WP_000840481.1;Name=WP_000840481.1;gbkey=CDS;gene=ydhL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416165.2;locus_tag=AD39_RS0124265;product=DUF1289 domain-containing protein;protein_id=WP_000840481.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 144830 145429 . + . ID=gene-AD39_RS14750;Name=nemR;gbkey=Gene;gene=nemR;gene_biotype=protein_coding;locus_tag=AD39_RS14750;old_locus_tag=AD39_1885 NZ_JJLH01000027.1 Protein Homology CDS 144830 145429 . + 0 ID=cds-WP_001032938.1;Parent=gene-AD39_RS14750;Dbxref=GenBank:WP_001032938.1;Name=WP_001032938.1;gbkey=CDS;gene=nemR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416166.3;locus_tag=AD39_RS14750;product=DNA-binding transcriptional regulator NemR;protein_id=WP_001032938.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 145466 146563 . + . ID=gene-AD39_RS14745;Name=nemA;gbkey=Gene;gene=nemA;gene_biotype=protein_coding;locus_tag=AD39_RS14745;old_locus_tag=AD39_1886 NZ_JJLH01000027.1 Protein Homology CDS 145466 146563 . + 0 ID=cds-WP_001494226.1;Parent=gene-AD39_RS14745;Dbxref=GenBank:WP_001494226.1;Name=WP_001494226.1;gbkey=CDS;gene=nemA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416167.1;locus_tag=AD39_RS14745;product=N-ethylmaleimide reductase;protein_id=WP_001494226.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 146644 147051 . + . ID=gene-AD39_RS14740;Name=gloA;gbkey=Gene;gene=gloA;gene_biotype=protein_coding;locus_tag=AD39_RS14740;old_locus_tag=AD39_1887 NZ_JJLH01000027.1 Protein Homology CDS 146644 147051 . + 0 ID=cds-WP_001237796.1;Parent=gene-AD39_RS14740;Dbxref=GenBank:WP_001237796.1;Name=WP_001237796.1;gbkey=CDS;gene=gloA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008500591.1;locus_tag=AD39_RS14740;product=lactoylglutathione lyase;protein_id=WP_001237796.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 147154 147801 . + . ID=gene-AD39_RS14735;Name=rnt;gbkey=Gene;gene=rnt;gene_biotype=protein_coding;locus_tag=AD39_RS14735;old_locus_tag=AD39_1888 NZ_JJLH01000027.1 Protein Homology CDS 147154 147801 . + 0 ID=cds-WP_001282281.1;Parent=gene-AD39_RS14735;Dbxref=GenBank:WP_001282281.1;Name=WP_001282281.1;Ontology_term=GO:0006364,GO:0042780,GO:0016896;gbkey=CDS;gene=rnt;go_function=RNA exonuclease activity%2C producing 5'-phosphomonoesters|0016896||IEA;go_process=rRNA processing|0006364||IEA,tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310388.1;locus_tag=AD39_RS14735;product=ribonuclease T;protein_id=WP_001282281.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 147894 152510 . + . ID=gene-AD39_RS14730;Name=lhr;gbkey=Gene;gene=lhr;gene_biotype=protein_coding;locus_tag=AD39_RS14730;old_locus_tag=AD39_1889 NZ_JJLH01000027.1 Protein Homology CDS 147894 152510 . + 0 ID=cds-WP_032286080.1;Parent=gene-AD39_RS14730;Dbxref=GenBank:WP_032286080.1;Name=WP_032286080.1;Ontology_term=GO:0003676,GO:0005524,GO:0016818;gbkey=CDS;gene=lhr;go_function=nucleic acid binding|0003676||IEA,ATP binding|0005524||IEA,hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416170.1;locus_tag=AD39_RS14730;product=ATP-dependent helicase;protein_id=WP_032286080.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 152561 152908 . - . ID=gene-AD39_RS14725;Name=grxD;gbkey=Gene;gene=grxD;gene_biotype=protein_coding;locus_tag=AD39_RS14725;old_locus_tag=AD39_1890 NZ_JJLH01000027.1 Protein Homology CDS 152561 152908 . - 0 ID=cds-WP_000108172.1;Parent=gene-AD39_RS14725;Dbxref=GenBank:WP_000108172.1;Name=WP_000108172.1;gbkey=CDS;gene=grxD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310390.1;locus_tag=AD39_RS14725;product=monothiol glutaredoxin 4;protein_id=WP_000108172.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 153242 154057 . + . ID=gene-AD39_RS14720;Name=mepH;gbkey=Gene;gene=mepH;gene_biotype=protein_coding;locus_tag=AD39_RS14720;old_locus_tag=AD39_1892 NZ_JJLH01000027.1 Protein Homology CDS 153242 154057 . + 0 ID=cds-WP_000101193.1;Parent=gene-AD39_RS14720;Dbxref=GenBank:WP_000101193.1;Name=WP_000101193.1;gbkey=CDS;gene=mepH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416172.1;locus_tag=AD39_RS14720;product=peptidoglycan DD-endopeptidase MepH;protein_id=WP_000101193.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 154185 154766 . + . ID=gene-AD39_RS14715;Name=sodB;gbkey=Gene;gene=sodB;gene_biotype=protein_coding;locus_tag=AD39_RS14715;old_locus_tag=AD39_1893 NZ_JJLH01000027.1 Protein Homology CDS 154185 154766 . + 0 ID=cds-WP_000007283.1;Parent=gene-AD39_RS14715;Dbxref=GenBank:WP_000007283.1;Name=WP_000007283.1;Ontology_term=GO:0006801,GO:0004784,GO:0046872;gbkey=CDS;gene=sodB;go_function=superoxide dismutase activity|0004784||IEA,metal ion binding|0046872||IEA;go_process=superoxide metabolic process|0006801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310392.1;locus_tag=AD39_RS14715;product=superoxide dismutase [Fe];protein_id=WP_000007283.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 154912 156081 . - . ID=gene-AD39_RS14710;Name=ydhP;gbkey=Gene;gene=ydhP;gene_biotype=protein_coding;locus_tag=AD39_RS14710;old_locus_tag=AD39_1894 NZ_JJLH01000027.1 Protein Homology CDS 154912 156081 . - 0 ID=cds-WP_001390258.1;Parent=gene-AD39_RS14710;Dbxref=GenBank:WP_001390258.1;Name=WP_001390258.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;gene=ydhP;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416174.1;locus_tag=AD39_RS14710;product=MFS transporter;protein_id=WP_001390258.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 156247 156336 . - . ID=gene-AD39_RS0124270;Name=cydH;gbkey=Gene;gene=cydH;gene_biotype=protein_coding;gene_synonym=ynhF;locus_tag=AD39_RS0124270;old_locus_tag=AD39_1895 NZ_JJLH01000027.1 Protein Homology CDS 156247 156336 . - 0 ID=cds-WP_000102278.1;Parent=gene-AD39_RS0124270;Dbxref=GenBank:WP_000102278.1;Name=WP_000102278.1;gbkey=CDS;gene=cydH;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165321.1;locus_tag=AD39_RS0124270;product=cytochrome bd-I accessory subunit CydH;protein_id=WP_000102278.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 156635 157660 . + . ID=gene-AD39_RS14705;Name=purR;gbkey=Gene;gene=purR;gene_biotype=protein_coding;locus_tag=AD39_RS14705;old_locus_tag=AD39_1896 NZ_JJLH01000027.1 Protein Homology CDS 156635 157660 . + 0 ID=cds-WP_000190982.1;Parent=gene-AD39_RS14705;Dbxref=GenBank:WP_000190982.1;Name=WP_000190982.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=purR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005127190.1;locus_tag=AD39_RS14705;product=HTH-type transcriptional repressor PurR;protein_id=WP_000190982.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 157657 158589 . - . ID=gene-AD39_RS14700;Name=punR;gbkey=Gene;gene=punR;gene_biotype=protein_coding;locus_tag=AD39_RS14700;old_locus_tag=AD39_1897 NZ_JJLH01000027.1 Protein Homology CDS 157657 158589 . - 0 ID=cds-WP_000269501.1;Parent=gene-AD39_RS14700;Dbxref=GenBank:WP_000269501.1;Name=WP_000269501.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=punR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310395.1;locus_tag=AD39_RS14700;product=DNA-binding transcriptional activator PunR;protein_id=WP_000269501.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 158702 159913 . + . ID=gene-AD39_RS14695;Name=punC;gbkey=Gene;gene=punC;gene_biotype=protein_coding;gene_synonym=ydhC;locus_tag=AD39_RS14695;old_locus_tag=AD39_1898 NZ_JJLH01000027.1 Protein Homology CDS 158702 159913 . + 0 ID=cds-WP_001182363.1;Parent=gene-AD39_RS14695;Dbxref=GenBank:WP_001182363.1;Name=WP_001182363.1;Ontology_term=GO:1990961,GO:0042910,GO:0016020;gbkey=CDS;gene=punC;go_component=membrane|0016020||IEA;go_function=xenobiotic transmembrane transporter activity|0042910||IEA;go_process=xenobiotic detoxification by transmembrane export across the plasma membrane|1990961||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310396.1;locus_tag=AD39_RS14695;product=purine nucleoside transporter PunC;protein_id=WP_001182363.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 160204 161352 . + . ID=gene-AD39_RS14690;Name=cfa;gbkey=Gene;gene=cfa;gene_biotype=protein_coding;locus_tag=AD39_RS14690;old_locus_tag=AD39_1899 NZ_JJLH01000027.1 Protein Homology CDS 160204 161352 . + 0 ID=cds-WP_000098911.1;Parent=gene-AD39_RS14690;Dbxref=GenBank:WP_000098911.1;Name=WP_000098911.1;gbkey=CDS;gene=cfa;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416178.1;locus_tag=AD39_RS14690;product=cyclopropane fatty acyl phospholipid synthase;protein_id=WP_000098911.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 161392 162033 . - . ID=gene-AD39_RS14685;Name=ribE;gbkey=Gene;gene=ribE;gene_biotype=protein_coding;locus_tag=AD39_RS14685;old_locus_tag=AD39_1900 NZ_JJLH01000027.1 Protein Homology CDS 161392 162033 . - 0 ID=cds-WP_000493947.1;Parent=gene-AD39_RS14685;Dbxref=GenBank:WP_000493947.1;Name=WP_000493947.1;Ontology_term=GO:0004746;gbkey=CDS;gene=ribE;go_function=riboflavin synthase activity|0004746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416179.1;locus_tag=AD39_RS14685;product=riboflavin synthase;protein_id=WP_000493947.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 162248 163621 . + . ID=gene-AD39_RS14680;Name=mdtK;gbkey=Gene;gene=mdtK;gene_biotype=protein_coding;locus_tag=AD39_RS14680;old_locus_tag=AD39_1901 NZ_JJLH01000027.1 Protein Homology CDS 162248 163621 . + 0 ID=cds-WP_001174942.1;Parent=gene-AD39_RS14680;Dbxref=GenBank:WP_001174942.1;Name=WP_001174942.1;gbkey=CDS;gene=mdtK;inference=COORDINATES: similar to AA sequence:RefSeq:YP_025307.1;locus_tag=AD39_RS14680;product=multidrug efflux MATE transporter MdtK;protein_id=WP_001174942.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 163662 164918 . - . ID=gene-AD39_RS14675;Name=ydhQ;gbkey=Gene;gene=ydhQ;gene_biotype=protein_coding;locus_tag=AD39_RS14675;old_locus_tag=AD39_1902 NZ_JJLH01000027.1 Protein Homology CDS 163662 164918 . - 0 ID=cds-WP_032254515.1;Parent=gene-AD39_RS14675;Dbxref=GenBank:WP_032254515.1;Name=WP_032254515.1;gbkey=CDS;gene=ydhQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416181.1;locus_tag=AD39_RS14675;product=AIDA repeat-containing protein;protein_id=WP_032254515.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 165226 165302 . + . ID=gene-AD39_RS14670;Name=AD39_RS14670;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS14670;old_locus_tag=AD39_1903 NZ_JJLH01000027.1 tRNAscan-SE tRNA 165226 165302 . + . ID=rna-AD39_RS14670;Parent=gene-AD39_RS14670;anticodon=(pos:165260..165262);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS14670;product=tRNA-Val NZ_JJLH01000027.1 tRNAscan-SE exon 165226 165302 . + . ID=exon-AD39_RS14670-1;Parent=rna-AD39_RS14670;anticodon=(pos:165260..165262);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS14670;product=tRNA-Val NZ_JJLH01000027.1 RefSeq gene 165307 165383 . + . ID=gene-AD39_RS14665;Name=AD39_RS14665;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS14665;old_locus_tag=AD39_1904 NZ_JJLH01000027.1 tRNAscan-SE tRNA 165307 165383 . + . ID=rna-AD39_RS14665;Parent=gene-AD39_RS14665;anticodon=(pos:165341..165343);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS14665;product=tRNA-Val NZ_JJLH01000027.1 tRNAscan-SE exon 165307 165383 . + . ID=exon-AD39_RS14665-1;Parent=rna-AD39_RS14665;anticodon=(pos:165341..165343);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS14665;product=tRNA-Val NZ_JJLH01000027.1 RefSeq gene 165491 165796 . + . ID=gene-AD39_RS14660;Name=ydhR;gbkey=Gene;gene=ydhR;gene_biotype=protein_coding;locus_tag=AD39_RS14660;old_locus_tag=AD39_1905 NZ_JJLH01000027.1 Protein Homology CDS 165491 165796 . + 0 ID=cds-WP_000212657.1;Parent=gene-AD39_RS14660;Dbxref=GenBank:WP_000212657.1;Name=WP_000212657.1;gbkey=CDS;gene=ydhR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416182.1;locus_tag=AD39_RS14660;product=monooxygenase;protein_id=WP_000212657.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 165922 167526 . + . ID=gene-AD39_RS14655;Name=ydhS;gbkey=Gene;gene=ydhS;gene_biotype=protein_coding;locus_tag=AD39_RS14655;old_locus_tag=AD39_1906 NZ_JJLH01000027.1 Protein Homology CDS 165922 167526 . + 0 ID=cds-WP_032283253.1;Parent=gene-AD39_RS14655;Dbxref=GenBank:WP_032283253.1;Name=WP_032283253.1;gbkey=CDS;gene=ydhS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416183.1;locus_tag=AD39_RS14655;product=FAD-NAD(P)-binding protein;protein_id=WP_032283253.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 167538 168350 . - . ID=gene-AD39_RS14650;Name=ydhT;gbkey=Gene;gene=ydhT;gene_biotype=protein_coding;locus_tag=AD39_RS14650;old_locus_tag=AD39_1907 NZ_JJLH01000027.1 Protein Homology CDS 167538 168350 . - 0 ID=cds-WP_000587560.1;Parent=gene-AD39_RS14650;Dbxref=GenBank:WP_000587560.1;Name=WP_000587560.1;gbkey=CDS;gene=ydhT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707567.1;locus_tag=AD39_RS14650;product=protein YdhT;protein_id=WP_000587560.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 168354 169139 . - . ID=gene-AD39_RS14645;Name=phsC;gbkey=Gene;gene=phsC;gene_biotype=protein_coding;locus_tag=AD39_RS14645;old_locus_tag=AD39_1908 NZ_JJLH01000027.1 Protein Homology CDS 168354 169139 . - 0 ID=cds-WP_001069997.1;Parent=gene-AD39_RS14645;Dbxref=GenBank:WP_001069997.1;Name=WP_001069997.1;gbkey=CDS;gene=phsC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310404.1;locus_tag=AD39_RS14645;product=thiosulfate reductase cytochrome B subunit;protein_id=WP_001069997.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 169136 169804 . - . ID=gene-AD39_RS14640;Name=ydhX;gbkey=Gene;gene=ydhX;gene_biotype=protein_coding;locus_tag=AD39_RS14640;old_locus_tag=AD39_1909 NZ_JJLH01000027.1 Protein Homology CDS 169136 169804 . - 0 ID=cds-WP_001310861.1;Parent=gene-AD39_RS14640;Dbxref=GenBank:WP_001310861.1;Name=WP_001310861.1;gbkey=CDS;gene=ydhX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416186.4;locus_tag=AD39_RS14640;product=4Fe-4S dicluster domain-containing protein;protein_id=WP_001310861.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 169868 170506 . - . ID=gene-AD39_RS14635;Name=ydhW;gbkey=Gene;gene=ydhW;gene_biotype=protein_coding;locus_tag=AD39_RS14635;old_locus_tag=AD39_1910 NZ_JJLH01000027.1 Protein Homology CDS 169868 170506 . - 0 ID=cds-WP_001504323.1;Parent=gene-AD39_RS14635;Dbxref=GenBank:WP_001504323.1;Name=WP_001504323.1;gbkey=CDS;gene=ydhW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310406.2;locus_tag=AD39_RS14635;product=YdhW family putative oxidoreductase system protein;protein_id=WP_001504323.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 170519 172621 . - . ID=gene-AD39_RS14630;Name=ydhV;gbkey=Gene;gene=ydhV;gene_biotype=protein_coding;locus_tag=AD39_RS14630;old_locus_tag=AD39_1911 NZ_JJLH01000027.1 Protein Homology CDS 170519 172621 . - 0 ID=cds-WP_001273517.1;Parent=gene-AD39_RS14630;Dbxref=GenBank:WP_001273517.1;Name=WP_001273517.1;Ontology_term=GO:0009055,GO:0016491,GO:0051536;gbkey=CDS;gene=ydhV;go_function=electron transfer activity|0009055||IEA,oxidoreductase activity|0016491||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416188.1;locus_tag=AD39_RS14630;product=aldehyde ferredoxin oxidoreductase;protein_id=WP_001273517.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 172642 173268 . - . ID=gene-AD39_RS14625;Name=ydhY;gbkey=Gene;gene=ydhY;gene_biotype=protein_coding;locus_tag=AD39_RS14625;old_locus_tag=AD39_1912 NZ_JJLH01000027.1 Protein Homology CDS 172642 173268 . - 0 ID=cds-WP_001070230.1;Parent=gene-AD39_RS14625;Dbxref=GenBank:WP_001070230.1;Name=WP_001070230.1;gbkey=CDS;gene=ydhY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310408.1;locus_tag=AD39_RS14625;product=ferredoxin-like protein;protein_id=WP_001070230.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 173724 173933 . - . ID=gene-AD39_RS14620;Name=fumD;gbkey=Gene;gene=fumD;gene_biotype=protein_coding;locus_tag=AD39_RS14620;old_locus_tag=AD39_1914 NZ_JJLH01000027.1 Protein Homology CDS 173724 173933 . - 0 ID=cds-WP_000528342.1;Parent=gene-AD39_RS14620;Dbxref=GenBank:WP_000528342.1;Name=WP_000528342.1;gbkey=CDS;gene=fumD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310409.1;locus_tag=AD39_RS14620;product=fumarate hydratase FumD;protein_id=WP_000528342.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 174288 174482 . + . ID=gene-AD39_RS29705;Name=AD39_RS29705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29705 NZ_JJLH01000027.1 Protein Homology CDS 174288 174482 . + 0 ID=cds-WP_240806354.1;Parent=gene-AD39_RS29705;Dbxref=GenBank:WP_240806354.1;Name=WP_240806354.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010283910.1;locus_tag=AD39_RS29705;product=protein YnhH;protein_id=WP_240806354.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 174490 175902 . + . ID=gene-AD39_RS14615;Name=pykF;gbkey=Gene;gene=pykF;gene_biotype=protein_coding;locus_tag=AD39_RS14615;old_locus_tag=AD39_1915 NZ_JJLH01000027.1 Protein Homology CDS 174490 175902 . + 0 ID=cds-WP_001295403.1;Parent=gene-AD39_RS14615;Dbxref=GenBank:WP_001295403.1;Name=WP_001295403.1;Ontology_term=GO:0006096,GO:0004743;gbkey=CDS;gene=pykF;go_function=pyruvate kinase activity|0004743||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010346010.1;locus_tag=AD39_RS14615;product=pyruvate kinase PykF;protein_id=WP_001295403.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 176213 176449 . + . ID=gene-AD39_RS14610;Name=lpp;gbkey=Gene;gene=lpp;gene_biotype=protein_coding;locus_tag=AD39_RS14610;old_locus_tag=AD39_1916 NZ_JJLH01000027.1 Protein Homology CDS 176213 176449 . + 0 ID=cds-WP_000648420.1;Parent=gene-AD39_RS14610;Dbxref=GenBank:WP_000648420.1;Name=WP_000648420.1;gbkey=CDS;gene=lpp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310411.1;locus_tag=AD39_RS14610;product=murein lipoprotein Lpp;protein_id=WP_000648420.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 176512 177516 . - . ID=gene-AD39_RS14605;Name=ldtE;gbkey=Gene;gene=ldtE;gene_biotype=protein_coding;locus_tag=AD39_RS14605;old_locus_tag=AD39_1917 NZ_JJLH01000027.1 Protein Homology CDS 176512 177516 . - 0 ID=cds-WP_021542134.1;Parent=gene-AD39_RS14605;Dbxref=GenBank:WP_021542134.1;Name=WP_021542134.1;Ontology_term=GO:0009252,GO:0018104,GO:0016757,GO:0071972;gbkey=CDS;gene=ldtE;go_function=glycosyltransferase activity|0016757||IEA,peptidoglycan L%2CD-transpeptidase activity|0071972||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,peptidoglycan-protein cross-linking|0018104||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707577.1;locus_tag=AD39_RS14605;product=L%2CD-transpeptidase LdtE;protein_id=WP_021542134.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 177665 178081 . - . ID=gene-AD39_RS14600;Name=sufE;gbkey=Gene;gene=sufE;gene_biotype=protein_coding;locus_tag=AD39_RS14600;old_locus_tag=AD39_1918 NZ_JJLH01000027.1 Protein Homology CDS 177665 178081 . - 0 ID=cds-WP_001196517.1;Parent=gene-AD39_RS14600;Dbxref=GenBank:WP_001196517.1;Name=WP_001196517.1;gbkey=CDS;gene=sufE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416194.1;locus_tag=AD39_RS14600;product=cysteine desulfuration protein SufE;protein_id=WP_001196517.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 178094 179314 . - . ID=gene-AD39_RS14595;Name=sufS;gbkey=Gene;gene=sufS;gene_biotype=protein_coding;locus_tag=AD39_RS14595;old_locus_tag=AD39_1919 NZ_JJLH01000027.1 Protein Homology CDS 178094 179314 . - 0 ID=cds-WP_032283256.1;Parent=gene-AD39_RS14595;Dbxref=GenBank:WP_032283256.1;Name=WP_032283256.1;Ontology_term=GO:0006534,GO:0030170,GO:0031071;gbkey=CDS;gene=sufS;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine desulfurase activity|0031071||IEA;go_process=cysteine metabolic process|0006534||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310414.1;locus_tag=AD39_RS14595;product=cysteine desulfurase SufS;protein_id=WP_032283256.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 179311 180582 . - . ID=gene-AD39_RS14590;Name=sufD;gbkey=Gene;gene=sufD;gene_biotype=protein_coding;locus_tag=AD39_RS14590;old_locus_tag=AD39_1920 NZ_JJLH01000027.1 Protein Homology CDS 179311 180582 . - 0 ID=cds-WP_000908012.1;Parent=gene-AD39_RS14590;Dbxref=GenBank:WP_000908012.1;Name=WP_000908012.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufD;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707580.1;locus_tag=AD39_RS14590;product=Fe-S cluster assembly protein SufD;protein_id=WP_000908012.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 180557 181303 . - . ID=gene-AD39_RS14585;Name=sufC;gbkey=Gene;gene=sufC;gene_biotype=protein_coding;locus_tag=AD39_RS14585;old_locus_tag=AD39_1921 NZ_JJLH01000027.1 Protein Homology CDS 180557 181303 . - 0 ID=cds-WP_000948855.1;Parent=gene-AD39_RS14585;Dbxref=GenBank:WP_000948855.1;Name=WP_000948855.1;Ontology_term=GO:0005524;gbkey=CDS;gene=sufC;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008500629.1;locus_tag=AD39_RS14585;product=Fe-S cluster assembly ATPase SufC;protein_id=WP_000948855.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 181313 182800 . - . ID=gene-AD39_RS14580;Name=sufB;gbkey=Gene;gene=sufB;gene_biotype=protein_coding;locus_tag=AD39_RS14580;old_locus_tag=AD39_1922 NZ_JJLH01000027.1 Protein Homology CDS 181313 182800 . - 0 ID=cds-WP_001297388.1;Parent=gene-AD39_RS14580;Dbxref=GenBank:WP_001297388.1;Name=WP_001297388.1;Ontology_term=GO:0016226;gbkey=CDS;gene=sufB;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416198.2;locus_tag=AD39_RS14580;product=Fe-S cluster assembly protein SufB;protein_id=WP_001297388.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 182809 183177 . - . ID=gene-AD39_RS14575;Name=sufA;gbkey=Gene;gene=sufA;gene_biotype=protein_coding;locus_tag=AD39_RS14575;old_locus_tag=AD39_1923 NZ_JJLH01000027.1 Protein Homology CDS 182809 183177 . - 0 ID=cds-WP_000367160.1;Parent=gene-AD39_RS14575;Dbxref=GenBank:WP_000367160.1;Name=WP_000367160.1;gbkey=CDS;gene=sufA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416199.1;locus_tag=AD39_RS14575;product=Fe-S cluster assembly scaffold SufA;protein_id=WP_000367160.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 183725 183913 . - . ID=gene-AD39_RS14570;Name=ydiH;gbkey=Gene;gene=ydiH;gene_biotype=protein_coding;locus_tag=AD39_RS14570;old_locus_tag=AD39_1924 NZ_JJLH01000027.1 Protein Homology CDS 183725 183913 . - 0 ID=cds-WP_001296104.1;Parent=gene-AD39_RS14570;Dbxref=GenBank:WP_001296104.1;Name=WP_001296104.1;gbkey=CDS;gene=ydiH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416200.2;locus_tag=AD39_RS14570;product=YdiH family protein;protein_id=WP_001296104.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 184013 184423 . - . ID=gene-AD39_RS14565;Name=menI;gbkey=Gene;gene=menI;gene_biotype=protein_coding;locus_tag=AD39_RS14565;old_locus_tag=AD39_1925 NZ_JJLH01000027.1 Protein Homology CDS 184013 184423 . - 0 ID=cds-WP_000637982.1;Parent=gene-AD39_RS14565;Dbxref=GenBank:WP_000637982.1;Name=WP_000637982.1;gbkey=CDS;gene=menI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416201.1;locus_tag=AD39_RS14565;product=1%2C4-dihydroxy-2-naphthoyl-CoA hydrolase;protein_id=WP_000637982.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 184420 187476 . - . ID=gene-AD39_RS14560;Name=ydiJ;gbkey=Gene;gene=ydiJ;gene_biotype=protein_coding;locus_tag=AD39_RS14560;old_locus_tag=AD39_1926 NZ_JJLH01000027.1 Protein Homology CDS 184420 187476 . - 0 ID=cds-WP_032283257.1;Parent=gene-AD39_RS14560;Dbxref=GenBank:WP_032283257.1;Name=WP_032283257.1;Ontology_term=GO:1903457,GO:0008720,GO:0046872;gbkey=CDS;gene=ydiJ;go_function=D-lactate dehydrogenase activity|0008720||IEA,metal ion binding|0046872||IEA;go_process=lactate catabolic process|1903457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310421.1;locus_tag=AD39_RS14560;product=D-2-hydroxyglutarate dehydrogenase YdiJ;protein_id=WP_032283257.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 187865 188977 . + . ID=gene-AD39_RS14555;Name=ydiK;gbkey=Gene;gene=ydiK;gene_biotype=protein_coding;locus_tag=AD39_RS14555;old_locus_tag=AD39_1927 NZ_JJLH01000027.1 Protein Homology CDS 187865 188977 . + 0 ID=cds-WP_000248636.1;Parent=gene-AD39_RS14555;Dbxref=GenBank:WP_000248636.1;Name=WP_000248636.1;gbkey=CDS;gene=ydiK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416203.1;locus_tag=AD39_RS14555;product=AI-2E family transporter YdiK;protein_id=WP_000248636.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 189163 189270 . + . ID=gene-AD39_RS26200;Name=rprA;gbkey=Gene;gene=rprA;gene_biotype=antisense_RNA;locus_tag=AD39_RS26200 NZ_JJLH01000027.1 cmsearch antisense_RNA 189163 189270 . + . ID=rna-AD39_RS26200;Parent=gene-AD39_RS26200;Dbxref=RFAM:RF00034;gbkey=ncRNA;gene=rprA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26200;product=antisense sRNA RprA NZ_JJLH01000027.1 cmsearch exon 189163 189270 . + . ID=exon-AD39_RS26200-1;Parent=rna-AD39_RS26200;Dbxref=RFAM:RF00034;gbkey=ncRNA;gene=rprA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26200;product=antisense sRNA RprA NZ_JJLH01000027.1 RefSeq gene 189406 189762 . + . ID=gene-AD39_RS14550;Name=ydiL;gbkey=Gene;gene=ydiL;gene_biotype=protein_coding;locus_tag=AD39_RS14550;old_locus_tag=AD39_1928 NZ_JJLH01000027.1 Protein Homology CDS 189406 189762 . + 0 ID=cds-WP_001297387.1;Parent=gene-AD39_RS14550;Dbxref=GenBank:WP_001297387.1;Name=WP_001297387.1;gbkey=CDS;gene=ydiL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416204.2;locus_tag=AD39_RS14550;product=YdiL family protein;protein_id=WP_001297387.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 189862 191076 . + . ID=gene-AD39_RS14545;Name=ydiM;gbkey=Gene;gene=ydiM;gene_biotype=protein_coding;locus_tag=AD39_RS14545;old_locus_tag=AD39_1929 NZ_JJLH01000027.1 Protein Homology CDS 189862 191076 . + 0 ID=cds-WP_000795596.1;Parent=gene-AD39_RS14545;Dbxref=GenBank:WP_000795596.1;Name=WP_000795596.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=ydiM;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310424.1;locus_tag=AD39_RS14545;product=MFS transporter;protein_id=WP_000795596.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 191303 192568 . + . ID=gene-AD39_RS14540;Name=ydiN;gbkey=Gene;gene=ydiN;gene_biotype=protein_coding;locus_tag=AD39_RS14540;old_locus_tag=AD39_1930 NZ_JJLH01000027.1 Protein Homology CDS 191303 192568 . + 0 ID=cds-WP_001440707.1;Parent=gene-AD39_RS14540;Dbxref=GenBank:WP_001440707.1;Name=WP_001440707.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=ydiN;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310425.2;locus_tag=AD39_RS14540;product=MFS transporter;protein_id=WP_001440707.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 192580 193446 . + . ID=gene-AD39_RS14535;Name=ydiB;gbkey=Gene;gene=ydiB;gene_biotype=protein_coding;locus_tag=AD39_RS14535;old_locus_tag=AD39_1931 NZ_JJLH01000027.1 Protein Homology CDS 192580 193446 . + 0 ID=cds-WP_032283259.1;Parent=gene-AD39_RS14535;Dbxref=GenBank:WP_032283259.1;Name=WP_032283259.1;gbkey=CDS;gene=ydiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416207.1;locus_tag=AD39_RS14535;product=quinate/shikimate dehydrogenase;protein_id=WP_032283259.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 193477 194235 . + . ID=gene-AD39_RS14530;Name=aroD;gbkey=Gene;gene=aroD;gene_biotype=protein_coding;locus_tag=AD39_RS14530;old_locus_tag=AD39_1932 NZ_JJLH01000027.1 Protein Homology CDS 193477 194235 . + 0 ID=cds-WP_000860182.1;Parent=gene-AD39_RS14530;Dbxref=GenBank:WP_000860182.1;Name=WP_000860182.1;Ontology_term=GO:0009423,GO:0003855;gbkey=CDS;gene=aroD;go_function=3-dehydroquinate dehydratase activity|0003855||IEA;go_process=chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310427.1;locus_tag=AD39_RS14530;product=type I 3-dehydroquinate dehydratase;protein_id=WP_000860182.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 194379 195974 . + . ID=gene-AD39_RS14525;Name=ydiF;gbkey=Gene;gene=ydiF;gene_biotype=protein_coding;locus_tag=AD39_RS14525;old_locus_tag=AD39_1933 NZ_JJLH01000027.1 Protein Homology CDS 194379 195974 . + 0 ID=cds-WP_000805691.1;Parent=gene-AD39_RS14525;Dbxref=GenBank:WP_000805691.1;Name=WP_000805691.1;gbkey=CDS;gene=ydiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310428.1;locus_tag=AD39_RS14525;product=acyl CoA:acetate/3-ketoacid CoA transferase;protein_id=WP_000805691.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 195988 197139 . + . ID=gene-AD39_RS14520;Name=ydiO;gbkey=Gene;gene=ydiO;gene_biotype=protein_coding;locus_tag=AD39_RS14520;old_locus_tag=AD39_1934 NZ_JJLH01000027.1 Protein Homology CDS 195988 197139 . + 0 ID=cds-WP_001470775.1;Parent=gene-AD39_RS14520;Dbxref=GenBank:WP_001470775.1;Name=WP_001470775.1;gbkey=CDS;gene=ydiO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310429.2;locus_tag=AD39_RS14520;product=acyl-CoA dehydrogenase;protein_id=WP_001470775.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 197182 198093 . - . ID=gene-AD39_RS14515;Name=ydiP;gbkey=Gene;gene=ydiP;gene_biotype=protein_coding;locus_tag=AD39_RS14515;old_locus_tag=AD39_1935 NZ_JJLH01000027.1 Protein Homology CDS 197182 198093 . - 0 ID=cds-WP_000284798.1;Parent=gene-AD39_RS14515;Dbxref=GenBank:WP_000284798.1;Name=WP_000284798.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=ydiP;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310430.1;locus_tag=AD39_RS14515;product=AraC family transcriptional regulator;protein_id=WP_000284798.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 198409 199173 . + . ID=gene-AD39_RS14505;Name=ydiQ;gbkey=Gene;gene=ydiQ;gene_biotype=protein_coding;locus_tag=AD39_RS14505;old_locus_tag=AD39_1937 NZ_JJLH01000027.1 Protein Homology CDS 198409 199173 . + 0 ID=cds-WP_000692148.1;Parent=gene-AD39_RS14505;Dbxref=GenBank:WP_000692148.1;Name=WP_000692148.1;gbkey=CDS;gene=ydiQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416212.1;locus_tag=AD39_RS14505;product=electron transfer flavoprotein;protein_id=WP_000692148.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 199193 200131 . + . ID=gene-AD39_RS14500;Name=ydiR;gbkey=Gene;gene=ydiR;gene_biotype=protein_coding;locus_tag=AD39_RS14500;old_locus_tag=AD39_1938 NZ_JJLH01000027.1 Protein Homology CDS 199193 200131 . + 0 ID=cds-WP_000080700.1;Parent=gene-AD39_RS14500;Dbxref=GenBank:WP_000080700.1;Name=WP_000080700.1;gbkey=CDS;gene=ydiR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310432.1;locus_tag=AD39_RS14500;product=electron transfer flavoprotein subunit alpha;protein_id=WP_000080700.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 200187 201476 . + . ID=gene-AD39_RS14495;Name=ydiS;gbkey=Gene;gene=ydiS;gene_biotype=protein_coding;locus_tag=AD39_RS14495;old_locus_tag=AD39_1939 NZ_JJLH01000027.1 Protein Homology CDS 200187 201476 . + 0 ID=cds-WP_032287557.1;Parent=gene-AD39_RS14495;Dbxref=GenBank:WP_032287557.1;Name=WP_032287557.1;gbkey=CDS;gene=ydiS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416214.1;locus_tag=AD39_RS14495;product=FAD-dependent oxidoreductase;protein_id=WP_032287557.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 201473 201766 . + . ID=gene-AD39_RS14490;Name=ydiT;gbkey=Gene;gene=ydiT;gene_biotype=protein_coding;locus_tag=AD39_RS14490;old_locus_tag=AD39_1940 NZ_JJLH01000027.1 Protein Homology CDS 201473 201766 . + 0 ID=cds-WP_000081071.1;Parent=gene-AD39_RS14490;Dbxref=GenBank:WP_000081071.1;Name=WP_000081071.1;gbkey=CDS;gene=ydiT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310434.1;locus_tag=AD39_RS14490;product=ferredoxin family protein;protein_id=WP_000081071.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 201823 203469 . + . ID=gene-AD39_RS14485;Name=fadK;gbkey=Gene;gene=fadK;gene_biotype=protein_coding;locus_tag=AD39_RS14485;old_locus_tag=AD39_1941 NZ_JJLH01000027.1 Protein Homology CDS 201823 203469 . + 0 ID=cds-WP_001297385.1;Parent=gene-AD39_RS14485;Dbxref=GenBank:WP_001297385.1;Name=WP_001297385.1;gbkey=CDS;gene=fadK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310435.2;locus_tag=AD39_RS14485;product=medium-chain fatty-acid--CoA ligase;protein_id=WP_001297385.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 203526 205904 . - . ID=gene-AD39_RS14480;Name=ppsA;gbkey=Gene;gene=ppsA;gene_biotype=protein_coding;locus_tag=AD39_RS14480;old_locus_tag=AD39_1942 NZ_JJLH01000027.1 Protein Homology CDS 203526 205904 . - 0 ID=cds-WP_001390266.1;Parent=gene-AD39_RS14480;Dbxref=GenBank:WP_001390266.1;Name=WP_001390266.1;Ontology_term=GO:0006090,GO:0016310,GO:0005524,GO:0008986,GO:0016772;gbkey=CDS;gene=ppsA;go_function=ATP binding|0005524||IEA,pyruvate%2C water dikinase activity|0008986||IEA,transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;go_process=pyruvate metabolic process|0006090||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416217.1;locus_tag=AD39_RS14480;product=phosphoenolpyruvate synthase;protein_id=WP_001390266.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 206237 207070 . + . ID=gene-AD39_RS14470;Name=ppsR;gbkey=Gene;gene=ppsR;gene_biotype=protein_coding;locus_tag=AD39_RS14470;old_locus_tag=AD39_1944 NZ_JJLH01000027.1 Protein Homology CDS 206237 207070 . + 0 ID=cds-WP_000368046.1;Parent=gene-AD39_RS14470;Dbxref=GenBank:WP_000368046.1;Name=WP_000368046.1;Ontology_term=GO:0004674,GO:0005524,GO:0016776,GO:0043531;gbkey=CDS;gene=ppsR;go_function=protein serine/threonine kinase activity|0004674||IEA,ATP binding|0005524||IEA,phosphotransferase activity%2C phosphate group as acceptor|0016776||IEA,ADP binding|0043531||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310437.1;locus_tag=AD39_RS14470;product=posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR;protein_id=WP_000368046.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 207227 208273 . + . ID=gene-AD39_RS14465;Name=aroH;gbkey=Gene;gene=aroH;gene_biotype=protein_coding;locus_tag=AD39_RS14465;old_locus_tag=AD39_1945 NZ_JJLH01000027.1 Protein Homology CDS 207227 208273 . + 0 ID=cds-WP_001082226.1;Parent=gene-AD39_RS14465;Dbxref=GenBank:WP_001082226.1;Name=WP_001082226.1;gbkey=CDS;gene=aroH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310438.1;locus_tag=AD39_RS14465;product=3-deoxy-7-phosphoheptulonate synthase AroH;protein_id=WP_001082226.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 208405 208596 . + . ID=gene-AD39_RS14460;Name=hemP;gbkey=Gene;gene=hemP;gene_biotype=protein_coding;locus_tag=AD39_RS14460;old_locus_tag=AD39_1946 NZ_JJLH01000027.1 Protein Homology CDS 208405 208596 . + 0 ID=cds-WP_001270809.1;Parent=gene-AD39_RS14460;Dbxref=GenBank:WP_001270809.1;Name=WP_001270809.1;gbkey=CDS;gene=hemP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310439.1;locus_tag=AD39_RS14460;product=hemin uptake protein HemP;protein_id=WP_001270809.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 208600 210036 . - . ID=gene-AD39_RS14455;Name=selO;gbkey=Gene;gene=selO;gene_biotype=protein_coding;locus_tag=AD39_RS14455;old_locus_tag=AD39_1947 NZ_JJLH01000027.1 Protein Homology CDS 208600 210036 . - 0 ID=cds-WP_000175617.1;Parent=gene-AD39_RS14455;Dbxref=GenBank:WP_000175617.1;Name=WP_000175617.1;Ontology_term=GO:0018117,GO:0005524,GO:0070733;gbkey=CDS;gene=selO;go_function=ATP binding|0005524||IEA,AMPylase activity|0070733||IEA;go_process=protein adenylylation|0018117||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707408.1;locus_tag=AD39_RS14455;product=protein adenylyltransferase SelO;protein_id=WP_000175617.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 210099 210812 . - . ID=gene-AD39_RS14450;Name=ydiV;gbkey=Gene;gene=ydiV;gene_biotype=protein_coding;locus_tag=AD39_RS14450;old_locus_tag=AD39_1948 NZ_JJLH01000027.1 Protein Homology CDS 210099 210812 . - 0 ID=cds-WP_001299130.1;Parent=gene-AD39_RS14450;Dbxref=GenBank:WP_001299130.1;Name=WP_001299130.1;gbkey=CDS;gene=ydiV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416222.1;locus_tag=AD39_RS14450;product=anti-FlhDC factor;protein_id=WP_001299130.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 211059 211523 . - . ID=gene-AD39_RS14445;Name=nlpC;gbkey=Gene;gene=nlpC;gene_biotype=protein_coding;locus_tag=AD39_RS14445;old_locus_tag=AD39_1949 NZ_JJLH01000027.1 Protein Homology CDS 211059 211523 . - 0 ID=cds-WP_001209780.1;Parent=gene-AD39_RS14445;Dbxref=GenBank:WP_001209780.1;Name=WP_001209780.1;gbkey=CDS;gene=nlpC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310442.1;locus_tag=AD39_RS14445;product=NlpC/P60 family protein;protein_id=WP_001209780.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 211601 212350 . - . ID=gene-AD39_RS14440;Name=btuD;gbkey=Gene;gene=btuD;gene_biotype=protein_coding;locus_tag=AD39_RS14440;old_locus_tag=AD39_1950 NZ_JJLH01000027.1 Protein Homology CDS 211601 212350 . - 0 ID=cds-WP_000029466.1;Parent=gene-AD39_RS14440;Dbxref=GenBank:WP_000029466.1;Name=WP_000029466.1;Ontology_term=GO:0015889,GO:0005524;gbkey=CDS;gene=btuD;go_function=ATP binding|0005524||IEA;go_process=cobalamin transport|0015889||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707405.1;locus_tag=AD39_RS14440;product=vitamin B12 ABC transporter ATP-binding protein BtuD;protein_id=WP_000029466.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 212350 212901 . - . ID=gene-AD39_RS14435;Name=btuE;gbkey=Gene;gene=btuE;gene_biotype=protein_coding;locus_tag=AD39_RS14435;old_locus_tag=AD39_1951 NZ_JJLH01000027.1 Protein Homology CDS 212350 212901 . - 0 ID=cds-WP_001154187.1;Parent=gene-AD39_RS14435;Dbxref=GenBank:WP_001154187.1;Name=WP_001154187.1;gbkey=CDS;gene=btuE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310444.1;locus_tag=AD39_RS14435;product=bifunctional thioredoxin/glutathione peroxidase;protein_id=WP_001154187.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 212964 213944 . - . ID=gene-AD39_RS14430;Name=btuC;gbkey=Gene;gene=btuC;gene_biotype=protein_coding;locus_tag=AD39_RS14430;old_locus_tag=AD39_1952 NZ_JJLH01000027.1 Protein Homology CDS 212964 213944 . - 0 ID=cds-WP_000956519.1;Parent=gene-AD39_RS14430;Dbxref=GenBank:WP_000956519.1;Name=WP_000956519.1;Ontology_term=GO:0005524,GO:0022857;gbkey=CDS;gene=btuC;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416226.1;locus_tag=AD39_RS14430;product=vitamin B12 ABC transporter permease BtuC;protein_id=WP_000956519.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 214045 214344 . - . ID=gene-AD39_RS14425;Name=ihfA;gbkey=Gene;gene=ihfA;gene_biotype=protein_coding;locus_tag=AD39_RS14425;old_locus_tag=AD39_1953 NZ_JJLH01000027.1 Protein Homology CDS 214045 214344 . - 0 ID=cds-WP_001229265.1;Parent=gene-AD39_RS14425;Dbxref=GenBank:WP_001229265.1;Name=WP_001229265.1;Ontology_term=GO:0006310,GO:0006355,GO:0003677;gbkey=CDS;gene=ihfA;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310446.1;locus_tag=AD39_RS14425;product=integration host factor subunit alpha;protein_id=WP_001229265.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 214349 216736 . - . ID=gene-AD39_RS14420;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=AD39_RS14420;old_locus_tag=AD39_1954 NZ_JJLH01000027.1 Protein Homology CDS 214349 216736 . - 0 ID=cds-WP_000672380.1;Parent=gene-AD39_RS14420;Dbxref=GenBank:WP_000672380.1;Name=WP_000672380.1;Ontology_term=GO:0006432,GO:0000287,GO:0004826,GO:0005524;gbkey=CDS;gene=pheT;go_function=magnesium ion binding|0000287||IEA,phenylalanine-tRNA ligase activity|0004826||IEA,ATP binding|0005524||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416228.1;locus_tag=AD39_RS14420;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_000672380.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 216751 217734 . - . ID=gene-AD39_RS14415;Name=pheS;gbkey=Gene;gene=pheS;gene_biotype=protein_coding;locus_tag=AD39_RS14415;old_locus_tag=AD39_1955 NZ_JJLH01000027.1 Protein Homology CDS 216751 217734 . - 0 ID=cds-WP_000018596.1;Parent=gene-AD39_RS14415;Dbxref=GenBank:WP_000018596.1;Name=WP_000018596.1;Ontology_term=GO:0006432,GO:0000166,GO:0004826,GO:0005524,GO:0005737;gbkey=CDS;gene=pheS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,phenylalanine-tRNA ligase activity|0004826||IEA,ATP binding|0005524||IEA;go_process=phenylalanyl-tRNA aminoacylation|0006432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004851795.1;locus_tag=AD39_RS14415;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_000018596.1;transl_table=11 NZ_JJLH01000027.1 cmsearch sequence_feature 217943 218067 . - . ID=id-NZ_JJLH01000027.1:217943..218067;Dbxref=RFAM:RF01859;Note=Phe leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5 NZ_JJLH01000027.1 RefSeq gene 218017 218061 . - . ID=gene-AD39_RS29025;Name=pheM;gbkey=Gene;gene=pheM;gene_biotype=protein_coding;locus_tag=AD39_RS29025 NZ_JJLH01000027.1 Protein Homology CDS 218017 218061 . - 0 ID=cds-WP_001386830.1;Parent=gene-AD39_RS29025;Dbxref=GenBank:WP_001386830.1;Name=WP_001386830.1;Ontology_term=GO:0031556;gbkey=CDS;gene=pheM;go_process=transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310449.1;locus_tag=AD39_RS29025;product=pheST operon leader peptide PheM;protein_id=WP_001386830.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 218184 218540 . - . ID=gene-AD39_RS14410;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=AD39_RS14410;old_locus_tag=AD39_1956 NZ_JJLH01000027.1 Protein Homology CDS 218184 218540 . - 0 ID=cds-WP_000124850.1;Parent=gene-AD39_RS14410;Dbxref=GenBank:WP_000124850.1;Name=WP_000124850.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rplT;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310450.1;locus_tag=AD39_RS14410;product=50S ribosomal protein L20;protein_id=WP_000124850.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 218593 218790 . - . ID=gene-AD39_RS14405;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;locus_tag=AD39_RS14405;old_locus_tag=AD39_1957 NZ_JJLH01000027.1 Protein Homology CDS 218593 218790 . - 0 ID=cds-WP_001124225.1;Parent=gene-AD39_RS14405;Dbxref=GenBank:WP_001124225.1;Name=WP_001124225.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006708231.1;locus_tag=AD39_RS14405;product=50S ribosomal protein L35;protein_id=WP_001124225.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 218887 219429 . - . ID=gene-AD39_RS0124280;Name=infC;gbkey=Gene;gene=infC;gene_biotype=protein_coding;locus_tag=AD39_RS0124280 NZ_JJLH01000027.1 Protein Homology CDS 218887 219429 . - 0 ID=cds-WP_001700733.1;Parent=gene-AD39_RS0124280;Dbxref=GenBank:WP_001700733.1;Name=WP_001700733.1;Ontology_term=GO:0006413,GO:0003743;gbkey=CDS;gene=infC;go_function=translation initiation factor activity|0003743||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310452.1;locus_tag=AD39_RS0124280;product=translation initiation factor IF-3;protein_id=WP_001700733.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 219433 221361 . - . ID=gene-AD39_RS14400;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=AD39_RS14400;old_locus_tag=AD39_1959 NZ_JJLH01000027.1 Protein Homology CDS 219433 221361 . - 0 ID=cds-WP_001144190.1;Parent=gene-AD39_RS14400;Dbxref=GenBank:WP_001144190.1;Name=WP_001144190.1;Ontology_term=GO:0006435,GO:0004829,GO:0005524,GO:0005737;gbkey=CDS;gene=thrS;go_component=cytoplasm|0005737||IEA;go_function=threonine-tRNA ligase activity|0004829||IEA,ATP binding|0005524||IEA;go_process=threonyl-tRNA aminoacylation|0006435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006894721.1;locus_tag=AD39_RS14400;product=threonine--tRNA ligase;protein_id=WP_001144190.1;transl_table=11 NZ_JJLH01000027.1 RefSeq pseudogene 221885 223755 . + . ID=gene-AD39_RS0124285;Name=espL1;gbkey=Gene;gene=espL1;gene_biotype=pseudogene;locus_tag=AD39_RS0124285;pseudo=true NZ_JJLH01000027.1 Protein Homology CDS 221885 223755 . + 0 ID=cds-AD39_RS0124285;Parent=gene-AD39_RS0124285;Note=frameshifted;gbkey=CDS;gene=espL1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310454.1;locus_tag=AD39_RS0124285;product=type III secretion system effector EspL1;pseudo=true;transl_table=11 NZ_JJLH01000027.1 RefSeq pseudogene 223931 224038 . + . ID=gene-AD39_RS0124290;Name=yniD;gbkey=Gene;gene=yniD;gene_biotype=pseudogene;locus_tag=AD39_RS0124290;pseudo=true NZ_JJLH01000027.1 Protein Homology CDS 223931 224038 . + 0 ID=cds-AD39_RS0124290;Parent=gene-AD39_RS0124290;Note=internal stop;gbkey=CDS;gene=yniD;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588455.2;locus_tag=AD39_RS0124290;product=small membrane protein YniD;pseudo=true;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 224091 224849 . - . ID=gene-AD39_RS14395;Name=ydiY;gbkey=Gene;gene=ydiY;gene_biotype=protein_coding;locus_tag=AD39_RS14395;old_locus_tag=AD39_1962 NZ_JJLH01000027.1 Protein Homology CDS 224091 224849 . - 0 ID=cds-WP_000771396.1;Parent=gene-AD39_RS14395;Dbxref=GenBank:WP_000771396.1;Name=WP_000771396.1;gbkey=CDS;gene=ydiY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310455.1;locus_tag=AD39_RS14395;product=DUF481 domain-containing protein;protein_id=WP_000771396.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 225136 226065 . + . ID=gene-AD39_RS14390;Name=pfkB;gbkey=Gene;gene=pfkB;gene_biotype=protein_coding;locus_tag=AD39_RS14390;old_locus_tag=AD39_1963 NZ_JJLH01000027.1 Protein Homology CDS 225136 226065 . + 0 ID=cds-WP_000251735.1;Parent=gene-AD39_RS14390;Dbxref=GenBank:WP_000251735.1;Name=WP_000251735.1;Ontology_term=GO:0005975,GO:0016773;gbkey=CDS;gene=pfkB;go_function=phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707391.2;locus_tag=AD39_RS14390;product=6-phosphofructokinase II;protein_id=WP_000251735.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 226166 226456 . + . ID=gene-AD39_RS14385;Name=ghoS;gbkey=Gene;gene=ghoS;gene_biotype=protein_coding;locus_tag=AD39_RS14385;old_locus_tag=AD39_1964 NZ_JJLH01000027.1 Protein Homology CDS 226166 226456 . + 0 ID=cds-WP_000146159.1;Parent=gene-AD39_RS14385;Dbxref=GenBank:WP_000146159.1;Name=WP_000146159.1;Ontology_term=GO:0004521;gbkey=CDS;gene=ghoS;go_function=RNA endonuclease activity|0004521||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310457.1;locus_tag=AD39_RS14385;product=type V toxin-antitoxin system endoribonuclease antitoxin GhoS;protein_id=WP_000146159.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 226562 227422 . + . ID=gene-AD39_RS14380;Name=yniA;gbkey=Gene;gene=yniA;gene_biotype=protein_coding;locus_tag=AD39_RS14380;old_locus_tag=AD39_1965 NZ_JJLH01000027.1 Protein Homology CDS 226562 227422 . + 0 ID=cds-WP_000267654.1;Parent=gene-AD39_RS14380;Dbxref=GenBank:WP_000267654.1;Name=WP_000267654.1;gbkey=CDS;gene=yniA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310458.1;locus_tag=AD39_RS14380;product=fructosamine kinase family protein;protein_id=WP_000267654.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 227463 227999 . - . ID=gene-AD39_RS14375;Name=yniB;gbkey=Gene;gene=yniB;gene_biotype=protein_coding;locus_tag=AD39_RS14375;old_locus_tag=AD39_1966 NZ_JJLH01000027.1 Protein Homology CDS 227463 227999 . - 0 ID=cds-WP_032283261.1;Parent=gene-AD39_RS14375;Dbxref=GenBank:WP_032283261.1;Name=WP_032283261.1;gbkey=CDS;gene=yniB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416240.1;locus_tag=AD39_RS14375;product=YniB family protein;protein_id=WP_032283261.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 228146 228814 . + . ID=gene-AD39_RS14370;Name=hxpB;gbkey=Gene;gene=hxpB;gene_biotype=protein_coding;locus_tag=AD39_RS14370;old_locus_tag=AD39_1967 NZ_JJLH01000027.1 Protein Homology CDS 228146 228814 . + 0 ID=cds-WP_000106834.1;Parent=gene-AD39_RS14370;Dbxref=GenBank:WP_000106834.1;Name=WP_000106834.1;gbkey=CDS;gene=hxpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310460.1;locus_tag=AD39_RS14370;product=hexitol phosphatase HxpB;protein_id=WP_000106834.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 228977 229567 . + . ID=gene-AD39_RS14365;Name=ydjM;gbkey=Gene;gene=ydjM;gene_biotype=protein_coding;locus_tag=AD39_RS14365;old_locus_tag=AD39_1968 NZ_JJLH01000027.1 Protein Homology CDS 228977 229567 . + 0 ID=cds-WP_001295408.1;Parent=gene-AD39_RS14365;Dbxref=GenBank:WP_001295408.1;Name=WP_001295408.1;gbkey=CDS;gene=ydjM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310461.2;locus_tag=AD39_RS14365;product=metal-dependent hydrolase;protein_id=WP_001295408.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 229700 231091 . + . ID=gene-AD39_RS14360;Name=tcyP;gbkey=Gene;gene=tcyP;gene_biotype=protein_coding;locus_tag=AD39_RS14360;old_locus_tag=AD39_1969 NZ_JJLH01000027.1 Protein Homology CDS 229700 231091 . + 0 ID=cds-WP_001010707.1;Parent=gene-AD39_RS14360;Dbxref=GenBank:WP_001010707.1;Name=WP_001010707.1;gbkey=CDS;gene=tcyP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120792.1;locus_tag=AD39_RS14360;product=cystine/sulfocysteine:cation symporter;protein_id=WP_001010707.1;transl_table=11 NZ_JJLH01000027.1 RefSeq pseudogene 231095 231898 . - . ID=gene-AD39_RS29710;Name=ydjO;gbkey=Gene;gene=ydjO;gene_biotype=pseudogene;locus_tag=AD39_RS29710;pseudo=true NZ_JJLH01000027.1 Protein Homology CDS 231095 231898 . - 0 ID=cds-AD39_RS29710;Parent=gene-AD39_RS29710;Note=frameshifted%3B internal stop;gbkey=CDS;gene=ydjO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416244.2;locus_tag=AD39_RS29710;product=protein YdjO;pseudo=true;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 232187 232450 . - . ID=gene-AD39_RS14355;Name=cedA;gbkey=Gene;gene=cedA;gene_biotype=protein_coding;locus_tag=AD39_RS14355;old_locus_tag=AD39_1972 NZ_JJLH01000027.1 Protein Homology CDS 232187 232450 . - 0 ID=cds-WP_001241561.1;Parent=gene-AD39_RS14355;Dbxref=GenBank:WP_001241561.1;Name=WP_001241561.1;gbkey=CDS;gene=cedA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310464.1;locus_tag=AD39_RS14355;product=cell division activator CedA;protein_id=WP_001241561.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 232633 234894 . + . ID=gene-AD39_RS14350;Name=katE;gbkey=Gene;gene=katE;gene_biotype=protein_coding;locus_tag=AD39_RS14350;old_locus_tag=AD39_1973 NZ_JJLH01000027.1 Protein Homology CDS 232633 234894 . + 0 ID=cds-WP_000077848.1;Parent=gene-AD39_RS14350;Dbxref=GenBank:WP_000077848.1;Name=WP_000077848.1;Ontology_term=GO:0006979,GO:0004096,GO:0020037;gbkey=CDS;gene=katE;go_function=catalase activity|0004096||IEA,heme binding|0020037||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_025308.1;locus_tag=AD39_RS14350;product=catalase HPII;protein_id=WP_000077848.1;transl_table=11 NZ_JJLH01000027.1 RefSeq gene 235129 236109 . - . ID=gene-AD39_RS14345;Name=AD39_RS14345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS14345;old_locus_tag=AD39_1975 NZ_JJLH01000027.1 Protein Homology CDS 235129 236109 . - 0 ID=cds-WP_000399652.1;Parent=gene-AD39_RS14345;Dbxref=GenBank:WP_000399652.1;Name=WP_000399652.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904434.1;locus_tag=AD39_RS14345;product=IS110-like element IS621 family transposase;protein_id=WP_000399652.1;transl_table=11 ##sequence-region NZ_JJLH01000028.1 1 436724 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000028.1 RefSeq region 1 436724 . + . ID=NZ_JJLH01000028.1:1..436724;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000028.1 RefSeq gene 308 1066 . - . ID=gene-AD39_RS14340;Name=chbG;gbkey=Gene;gene=chbG;gene_biotype=protein_coding;locus_tag=AD39_RS14340;old_locus_tag=AD39_1976 NZ_JJLH01000028.1 Protein Homology CDS 308 1066 . - 0 ID=cds-WP_000440447.1;Parent=gene-AD39_RS14340;Dbxref=GenBank:WP_000440447.1;Name=WP_000440447.1;Ontology_term=GO:0000272,GO:0016811;gbkey=CDS;gene=chbG;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amides|0016811||IEA;go_process=polysaccharide catabolic process|0000272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707379.1;locus_tag=AD39_RS14340;product=chitin disaccharide deacetylase;protein_id=WP_000440447.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 1079 2431 . - . ID=gene-AD39_RS14335;Name=celF;gbkey=Gene;gene=celF;gene_biotype=protein_coding;gene_synonym=chbF;locus_tag=AD39_RS14335;old_locus_tag=AD39_1977 NZ_JJLH01000028.1 Protein Homology CDS 1079 2431 . - 0 ID=cds-WP_000078722.1;Parent=gene-AD39_RS14335;Dbxref=GenBank:WP_000078722.1;Name=WP_000078722.1;gbkey=CDS;gene=celF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310467.1;locus_tag=AD39_RS14335;product=6-phospho-beta-glucosidase;protein_id=WP_000078722.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 2536 3378 . - . ID=gene-AD39_RS14330;Name=chbR;gbkey=Gene;gene=chbR;gene_biotype=protein_coding;locus_tag=AD39_RS14330;old_locus_tag=AD39_1978 NZ_JJLH01000028.1 Protein Homology CDS 2536 3378 . - 0 ID=cds-WP_000983653.1;Parent=gene-AD39_RS14330;Dbxref=GenBank:WP_000983653.1;Name=WP_000983653.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=chbR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416249.1;locus_tag=AD39_RS14330;product=transcriptional regulator ChbR;protein_id=WP_000983653.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 3386 3736 . - . ID=gene-AD39_RS14325;Name=chbA;gbkey=Gene;gene=chbA;gene_biotype=protein_coding;locus_tag=AD39_RS14325;old_locus_tag=AD39_1979 NZ_JJLH01000028.1 Protein Homology CDS 3386 3736 . - 0 ID=cds-WP_000968919.1;Parent=gene-AD39_RS14325;Dbxref=GenBank:WP_000968919.1;Name=WP_000968919.1;gbkey=CDS;gene=chbA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310469.1;locus_tag=AD39_RS14325;product=PTS N%2CN'-diacetylchitobiose transporter subunit IIA;protein_id=WP_000968919.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 3787 5145 . - . ID=gene-AD39_RS14320;Name=chbC;gbkey=Gene;gene=chbC;gene_biotype=protein_coding;locus_tag=AD39_RS14320;old_locus_tag=AD39_1980 NZ_JJLH01000028.1 Protein Homology CDS 3787 5145 . - 0 ID=cds-WP_000073041.1;Parent=gene-AD39_RS14320;Dbxref=GenBank:WP_000073041.1;Name=WP_000073041.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;gene=chbC;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416251.1;locus_tag=AD39_RS14320;product=PTS N%2CN'-diacetylchitobiose transporter subunit IIC;protein_id=WP_000073041.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 5230 5550 . - . ID=gene-AD39_RS14315;Name=chbB;gbkey=Gene;gene=chbB;gene_biotype=protein_coding;locus_tag=AD39_RS14315;old_locus_tag=AD39_1981 NZ_JJLH01000028.1 Protein Homology CDS 5230 5550 . - 0 ID=cds-WP_000412169.1;Parent=gene-AD39_RS14315;Dbxref=GenBank:WP_000412169.1;Name=WP_000412169.1;gbkey=CDS;gene=chbB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310471.1;locus_tag=AD39_RS14315;product=PTS N%2CN'-diacetylchitobiose transporter subunit IIB;protein_id=WP_000412169.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 5849 6187 . - . ID=gene-AD39_RS14310;Name=osmE;gbkey=Gene;gene=osmE;gene_biotype=protein_coding;locus_tag=AD39_RS14310;old_locus_tag=AD39_1982 NZ_JJLH01000028.1 Protein Homology CDS 5849 6187 . - 0 ID=cds-WP_001039044.1;Parent=gene-AD39_RS14310;Dbxref=GenBank:WP_001039044.1;Name=WP_001039044.1;Ontology_term=GO:0019867;gbkey=CDS;gene=osmE;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310472.1;locus_tag=AD39_RS14310;product=osmotically-inducible lipoprotein OsmE;protein_id=WP_001039044.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 6389 7216 . + . ID=gene-AD39_RS14305;Name=nadE;gbkey=Gene;gene=nadE;gene_biotype=protein_coding;locus_tag=AD39_RS14305;old_locus_tag=AD39_1983 NZ_JJLH01000028.1 Protein Homology CDS 6389 7216 . + 0 ID=cds-WP_000175009.1;Parent=gene-AD39_RS14305;Dbxref=GenBank:WP_000175009.1;Name=WP_000175009.1;Ontology_term=GO:0009435,GO:0003952,GO:0004359,GO:0008795;gbkey=CDS;gene=nadE;go_function=NAD+ synthase (glutamine-hydrolyzing) activity|0003952||IEA,glutaminase activity|0004359||IEA,NAD+ synthase activity|0008795||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416254.1;locus_tag=AD39_RS14305;product=ammonia-dependent NAD(+) synthetase;protein_id=WP_000175009.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 7446 8333 . + . ID=gene-AD39_RS14300;Name=cho;gbkey=Gene;gene=cho;gene_biotype=protein_coding;locus_tag=AD39_RS14300;old_locus_tag=AD39_1984 NZ_JJLH01000028.1 Protein Homology CDS 7446 8333 . + 0 ID=cds-WP_000252357.1;Parent=gene-AD39_RS14300;Dbxref=GenBank:WP_000252357.1;Name=WP_000252357.1;gbkey=CDS;gene=cho;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310474.1;locus_tag=AD39_RS14300;product=excinuclease Cho;protein_id=WP_000252357.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 8293 8868 . - . ID=gene-AD39_RS14295;Name=ves;gbkey=Gene;gene=ves;gene_biotype=protein_coding;locus_tag=AD39_RS14295;old_locus_tag=AD39_1985 NZ_JJLH01000028.1 Protein Homology CDS 8293 8868 . - 0 ID=cds-WP_000455601.1;Parent=gene-AD39_RS14295;Dbxref=GenBank:WP_000455601.1;Name=WP_000455601.1;gbkey=CDS;gene=ves;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310475.2;locus_tag=AD39_RS14295;product=environmental stress-induced protein Ves;protein_id=WP_000455601.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 9071 9556 . - . ID=gene-AD39_RS14290;Name=spy;gbkey=Gene;gene=spy;gene_biotype=protein_coding;locus_tag=AD39_RS14290;old_locus_tag=AD39_1986 NZ_JJLH01000028.1 Protein Homology CDS 9071 9556 . - 0 ID=cds-WP_001228981.1;Parent=gene-AD39_RS14290;Dbxref=GenBank:WP_001228981.1;Name=WP_001228981.1;Ontology_term=GO:0042597;gbkey=CDS;gene=spy;go_component=periplasmic space|0042597||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310476.1;locus_tag=AD39_RS14290;product=ATP-independent periplasmic protein-refolding chaperone Spy;protein_id=WP_001228981.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 9886 10854 . - . ID=gene-AD39_RS14285;Name=astE;gbkey=Gene;gene=astE;gene_biotype=protein_coding;locus_tag=AD39_RS14285;old_locus_tag=AD39_1987 NZ_JJLH01000028.1 Protein Homology CDS 9886 10854 . - 0 ID=cds-WP_000368506.1;Parent=gene-AD39_RS14285;Dbxref=GenBank:WP_000368506.1;Name=WP_000368506.1;Ontology_term=GO:0006527,GO:0008270,GO:0009017;gbkey=CDS;gene=astE;go_function=zinc ion binding|0008270||IEA,succinylglutamate desuccinylase activity|0009017||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416258.1;locus_tag=AD39_RS14285;product=succinylglutamate desuccinylase;protein_id=WP_000368506.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 10847 12190 . - . ID=gene-AD39_RS14280;Name=astB;gbkey=Gene;gene=astB;gene_biotype=protein_coding;locus_tag=AD39_RS14280;old_locus_tag=AD39_1988 NZ_JJLH01000028.1 Protein Homology CDS 10847 12190 . - 0 ID=cds-WP_000995005.1;Parent=gene-AD39_RS14280;Dbxref=GenBank:WP_000995005.1;Name=WP_000995005.1;Ontology_term=GO:0006527,GO:0009015;gbkey=CDS;gene=astB;go_function=N-succinylarginine dihydrolase activity|0009015||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416259.1;locus_tag=AD39_RS14280;product=N-succinylarginine dihydrolase;protein_id=WP_000995005.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 12187 13665 . - . ID=gene-AD39_RS14275;Name=astD;gbkey=Gene;gene=astD;gene_biotype=protein_coding;locus_tag=AD39_RS14275;old_locus_tag=AD39_1989 NZ_JJLH01000028.1 Protein Homology CDS 12187 13665 . - 0 ID=cds-WP_032287558.1;Parent=gene-AD39_RS14275;Dbxref=GenBank:WP_032287558.1;Name=WP_032287558.1;Ontology_term=GO:0006527,GO:0043824;gbkey=CDS;gene=astD;go_function=succinylglutamate-semialdehyde dehydrogenase activity|0043824||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310479.1;locus_tag=AD39_RS14275;product=succinylglutamate-semialdehyde dehydrogenase;protein_id=WP_032287558.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 13662 14696 . - . ID=gene-AD39_RS14270;Name=astA;gbkey=Gene;gene=astA;gene_biotype=protein_coding;locus_tag=AD39_RS14270;old_locus_tag=AD39_1990 NZ_JJLH01000028.1 Protein Homology CDS 13662 14696 . - 0 ID=cds-WP_001504339.1;Parent=gene-AD39_RS14270;Dbxref=GenBank:WP_001504339.1;Name=WP_001504339.1;Ontology_term=GO:0006527,GO:0008791;gbkey=CDS;gene=astA;go_function=arginine N-succinyltransferase activity|0008791||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310480.1;locus_tag=AD39_RS14270;product=arginine N-succinyltransferase;protein_id=WP_001504339.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 14693 15913 . - . ID=gene-AD39_RS14265;Name=astC;gbkey=Gene;gene=astC;gene_biotype=protein_coding;locus_tag=AD39_RS14265;old_locus_tag=AD39_1991 NZ_JJLH01000028.1 Protein Homology CDS 14693 15913 . - 0 ID=cds-WP_001597903.1;Parent=gene-AD39_RS14265;Dbxref=GenBank:WP_001597903.1;Name=WP_001597903.1;gbkey=CDS;gene=astC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416262.1;locus_tag=AD39_RS14265;product=succinylornithine/acetylornithine transaminase;protein_id=WP_001597903.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 16358 17164 . + . ID=gene-AD39_RS14260;Name=xthA;gbkey=Gene;gene=xthA;gene_biotype=protein_coding;locus_tag=AD39_RS14260;old_locus_tag=AD39_1993 NZ_JJLH01000028.1 Protein Homology CDS 16358 17164 . + 0 ID=cds-WP_000673924.1;Parent=gene-AD39_RS14260;Dbxref=GenBank:WP_000673924.1;Name=WP_000673924.1;Ontology_term=GO:0006281,GO:0003677,GO:0004519,GO:0008311;gbkey=CDS;gene=xthA;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA,double-stranded DNA 3'-5' DNA exonuclease activity|0008311||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416263.1;locus_tag=AD39_RS14260;product=exodeoxyribonuclease III;protein_id=WP_000673924.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 17331 18041 . + . ID=gene-AD39_RS14255;Name=ydjX;gbkey=Gene;gene=ydjX;gene_biotype=protein_coding;locus_tag=AD39_RS14255;old_locus_tag=AD39_1994 NZ_JJLH01000028.1 Protein Homology CDS 17331 18041 . + 0 ID=cds-WP_001351354.1;Parent=gene-AD39_RS14255;Dbxref=GenBank:WP_001351354.1;Name=WP_001351354.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ydjX;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416264.4;locus_tag=AD39_RS14255;product=TVP38/TMEM64 family protein;protein_id=WP_001351354.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 18046 18723 . + . ID=gene-AD39_RS14250;Name=ydjY;gbkey=Gene;gene=ydjY;gene_biotype=protein_coding;locus_tag=AD39_RS14250;old_locus_tag=AD39_1995 NZ_JJLH01000028.1 Protein Homology CDS 18046 18723 . + 0 ID=cds-WP_000077942.1;Parent=gene-AD39_RS14250;Dbxref=GenBank:WP_000077942.1;Name=WP_000077942.1;gbkey=CDS;gene=ydjY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416265.4;locus_tag=AD39_RS14250;product=lipoprotein YdjY;protein_id=WP_000077942.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 18738 19445 . + . ID=gene-AD39_RS14245;Name=ydjZ;gbkey=Gene;gene=ydjZ;gene_biotype=protein_coding;locus_tag=AD39_RS14245;old_locus_tag=AD39_1996 NZ_JJLH01000028.1 Protein Homology CDS 18738 19445 . + 0 ID=cds-WP_032287559.1;Parent=gene-AD39_RS14245;Dbxref=GenBank:WP_032287559.1;Name=WP_032287559.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ydjZ;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001697152.1;locus_tag=AD39_RS14245;product=TVP38/TMEM64 family protein;protein_id=WP_032287559.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 19445 19993 . + . ID=gene-AD39_RS14240;Name=ynjA;gbkey=Gene;gene=ynjA;gene_biotype=protein_coding;locus_tag=AD39_RS14240;old_locus_tag=AD39_1997 NZ_JJLH01000028.1 Protein Homology CDS 19445 19993 . + 0 ID=cds-WP_000524070.1;Parent=gene-AD39_RS14240;Dbxref=GenBank:WP_000524070.1;Name=WP_000524070.1;Ontology_term=GO:0051920;gbkey=CDS;gene=ynjA;go_function=peroxiredoxin activity|0051920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310486.1;locus_tag=AD39_RS14240;product=carboxymuconolactone decarboxylase family protein;protein_id=WP_000524070.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 20003 21169 . + . ID=gene-AD39_RS14235;Name=ynjB;gbkey=Gene;gene=ynjB;gene_biotype=protein_coding;locus_tag=AD39_RS14235;old_locus_tag=AD39_1998 NZ_JJLH01000028.1 Protein Homology CDS 20003 21169 . + 0 ID=cds-WP_032283268.1;Parent=gene-AD39_RS14235;Dbxref=GenBank:WP_032283268.1;Name=WP_032283268.1;gbkey=CDS;gene=ynjB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416268.2;locus_tag=AD39_RS14235;product=ABC transporter substrate-binding protein;protein_id=WP_032283268.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 21142 22677 . + . ID=gene-AD39_RS14230;Name=ynjC;gbkey=Gene;gene=ynjC;gene_biotype=protein_coding;locus_tag=AD39_RS14230;old_locus_tag=AD39_1999 NZ_JJLH01000028.1 Protein Homology CDS 21142 22677 . + 0 ID=cds-WP_000258508.1;Parent=gene-AD39_RS14230;Dbxref=GenBank:WP_000258508.1;Name=WP_000258508.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=ynjC;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416269.4;locus_tag=AD39_RS14230;product=ABC transporter permease subunit;protein_id=WP_000258508.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 22677 23330 . + . ID=gene-AD39_RS14225;Name=ynjD;gbkey=Gene;gene=ynjD;gene_biotype=protein_coding;locus_tag=AD39_RS14225;old_locus_tag=AD39_2000 NZ_JJLH01000028.1 Protein Homology CDS 22677 23330 . + 0 ID=cds-WP_000882826.1;Parent=gene-AD39_RS14225;Dbxref=GenBank:WP_000882826.1;Name=WP_000882826.1;Ontology_term=GO:0005524;gbkey=CDS;gene=ynjD;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310489.1;locus_tag=AD39_RS14225;product=ATP-binding cassette domain-containing protein;protein_id=WP_000882826.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 23397 24704 . + . ID=gene-AD39_RS14220;Name=ynjE;gbkey=Gene;gene=ynjE;gene_biotype=protein_coding;locus_tag=AD39_RS14220;old_locus_tag=AD39_2001 NZ_JJLH01000028.1 Protein Homology CDS 23397 24704 . + 0 ID=cds-WP_001351355.1;Parent=gene-AD39_RS14220;Dbxref=GenBank:WP_001351355.1;Name=WP_001351355.1;gbkey=CDS;gene=ynjE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416271.4;locus_tag=AD39_RS14220;product=thiosulfate sulfurtransferase YnjE;protein_id=WP_001351355.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 24713 25333 . - . ID=gene-AD39_RS14215;Name=ynjF;gbkey=Gene;gene=ynjF;gene_biotype=protein_coding;locus_tag=AD39_RS14215;old_locus_tag=AD39_2002 NZ_JJLH01000028.1 Protein Homology CDS 24713 25333 . - 0 ID=cds-WP_001307237.1;Parent=gene-AD39_RS14215;Dbxref=GenBank:WP_001307237.1;Name=WP_001307237.1;Ontology_term=GO:0008654,GO:0000287,GO:0016780,GO:0016020;gbkey=CDS;gene=ynjF;go_component=membrane|0016020||IEA;go_function=magnesium ion binding|0000287||IEA,phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707357.2;locus_tag=AD39_RS14215;product=CDP-alcohol phosphatidyltransferase family protein;protein_id=WP_001307237.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 25420 25827 . + . ID=gene-AD39_RS14210;Name=nudG;gbkey=Gene;gene=nudG;gene_biotype=protein_coding;locus_tag=AD39_RS14210;old_locus_tag=AD39_2003 NZ_JJLH01000028.1 Protein Homology CDS 25420 25827 . + 0 ID=cds-WP_000781877.1;Parent=gene-AD39_RS14210;Dbxref=GenBank:WP_000781877.1;Name=WP_000781877.1;gbkey=CDS;gene=nudG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310492.1;locus_tag=AD39_RS14210;product=CTP pyrophosphohydrolase;protein_id=WP_000781877.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 25793 26065 . - . ID=gene-AD39_RS14205;Name=ynjH;gbkey=Gene;gene=ynjH;gene_biotype=protein_coding;locus_tag=AD39_RS14205;old_locus_tag=AD39_2004 NZ_JJLH01000028.1 Protein Homology CDS 25793 26065 . - 0 ID=cds-WP_000085233.1;Parent=gene-AD39_RS14205;Dbxref=GenBank:WP_000085233.1;Name=WP_000085233.1;gbkey=CDS;gene=ynjH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416274.1;locus_tag=AD39_RS14205;product=YnjH family protein;protein_id=WP_000085233.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 26301 27644 . + . ID=gene-AD39_RS14200;Name=gdhA;gbkey=Gene;gene=gdhA;gene_biotype=protein_coding;locus_tag=AD39_RS14200;old_locus_tag=AD39_2005 NZ_JJLH01000028.1 Protein Homology CDS 26301 27644 . + 0 ID=cds-WP_032209430.1;Parent=gene-AD39_RS14200;Dbxref=GenBank:WP_032209430.1;Name=WP_032209430.1;Ontology_term=GO:0006520,GO:0016639;gbkey=CDS;gene=gdhA;go_function=oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor|0016639||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310494.1;locus_tag=AD39_RS14200;product=NADP-specific glutamate dehydrogenase;protein_id=WP_032209430.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 27700 29634 . - . ID=gene-AD39_RS14195;Name=AD39_RS14195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS14195;old_locus_tag=AD39_2006 NZ_JJLH01000028.1 Protein Homology CDS 27700 29634 . - 0 ID=cds-WP_032283271.1;Parent=gene-AD39_RS14195;Dbxref=GenBank:WP_032283271.1;Name=WP_032283271.1;Ontology_term=GO:0006457,GO:0005515;gbkey=CDS;go_function=protein binding|0005515||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001538823.1;locus_tag=AD39_RS14195;product=J domain-containing protein;protein_id=WP_032283271.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 29631 31331 . - . ID=gene-AD39_RS14190;Name=AD39_RS14190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS14190;old_locus_tag=AD39_2007 NZ_JJLH01000028.1 Protein Homology CDS 29631 31331 . - 0 ID=cds-WP_032283272.1;Parent=gene-AD39_RS14190;Dbxref=GenBank:WP_032283272.1;Name=WP_032283272.1;Ontology_term=GO:0005524,GO:0051082,GO:0140662;gbkey=CDS;go_function=ATP binding|0005524||IEA,unfolded protein binding|0051082||IEA,ATP-dependent protein folding chaperone|0140662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000583409.1;locus_tag=AD39_RS14190;product=Hsp70 family protein;protein_id=WP_032283272.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 31573 33519 . - . ID=gene-AD39_RS14185;Name=topB;gbkey=Gene;gene=topB;gene_biotype=protein_coding;locus_tag=AD39_RS14185;old_locus_tag=AD39_2008 NZ_JJLH01000028.1 Protein Homology CDS 31573 33519 . - 0 ID=cds-WP_001515429.1;Parent=gene-AD39_RS14185;Dbxref=GenBank:WP_001515429.1;Name=WP_001515429.1;gbkey=CDS;gene=topB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001515429.1;locus_tag=AD39_RS14185;product=DNA topoisomerase III;protein_id=WP_001515429.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 33524 34567 . - . ID=gene-AD39_RS14180;Name=selD;gbkey=Gene;gene=selD;gene_biotype=protein_coding;locus_tag=AD39_RS14180;old_locus_tag=AD39_2009 NZ_JJLH01000028.1 Protein Homology CDS 33524 34567 . - 0 ID=cds-WP_001370476.1;Parent=gene-AD39_RS14180;Dbxref=GenBank:WP_001370476.1;Name=WP_001370476.1;Ontology_term=GO:0016260,GO:0004756;gbkey=CDS;gene=selD;go_function=selenide%2C water dikinase activity|0004756||IEA;go_process=selenocysteine biosynthetic process|0016260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707349.2;locus_tag=AD39_RS14180;product=selenide%2C water dikinase SelD;protein_id=WP_001370476.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 34684 35235 . - . ID=gene-AD39_RS14175;Name=ydjA;gbkey=Gene;gene=ydjA;gene_biotype=protein_coding;locus_tag=AD39_RS14175;old_locus_tag=AD39_2010 NZ_JJLH01000028.1 Protein Homology CDS 34684 35235 . - 0 ID=cds-WP_000339283.1;Parent=gene-AD39_RS14175;Dbxref=GenBank:WP_000339283.1;Name=WP_000339283.1;Ontology_term=GO:0016491;gbkey=CDS;gene=ydjA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310498.1;locus_tag=AD39_RS14175;product=NAD(P)H nitroreductase;protein_id=WP_000339283.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 35396 37252 . + . ID=gene-AD39_RS14170;Name=sppA;gbkey=Gene;gene=sppA;gene_biotype=protein_coding;locus_tag=AD39_RS14170;old_locus_tag=AD39_2011 NZ_JJLH01000028.1 Protein Homology CDS 35396 37252 . + 0 ID=cds-WP_001259824.1;Parent=gene-AD39_RS14170;Dbxref=GenBank:WP_001259824.1;Name=WP_001259824.1;Ontology_term=GO:0006465,GO:0008233;gbkey=CDS;gene=sppA;go_function=peptidase activity|0008233||IEA;go_process=signal peptide processing|0006465||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707347.2;locus_tag=AD39_RS14170;product=signal peptide peptidase SppA;protein_id=WP_001259824.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 37419 38435 . + . ID=gene-AD39_RS14165;Name=ansA;gbkey=Gene;gene=ansA;gene_biotype=protein_coding;locus_tag=AD39_RS14165;old_locus_tag=AD39_2012 NZ_JJLH01000028.1 Protein Homology CDS 37419 38435 . + 0 ID=cds-WP_032283273.1;Parent=gene-AD39_RS14165;Dbxref=GenBank:WP_032283273.1;Name=WP_032283273.1;Ontology_term=GO:0006520,GO:0004067;gbkey=CDS;gene=ansA;go_function=asparaginase activity|0004067||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310501.1;locus_tag=AD39_RS14165;product=asparaginase;protein_id=WP_032283273.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 38446 39087 . + . ID=gene-AD39_RS14160;Name=pncA;gbkey=Gene;gene=pncA;gene_biotype=protein_coding;locus_tag=AD39_RS14160;old_locus_tag=AD39_2013 NZ_JJLH01000028.1 Protein Homology CDS 38446 39087 . + 0 ID=cds-WP_001120527.1;Parent=gene-AD39_RS14160;Dbxref=GenBank:WP_001120527.1;Name=WP_001120527.1;gbkey=CDS;gene=pncA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310502.2;locus_tag=AD39_RS14160;product=bifunctional nicotinamidase/pyrazinamidase;protein_id=WP_001120527.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 39180 40538 . - . ID=gene-AD39_RS14155;Name=ydjE;gbkey=Gene;gene=ydjE;gene_biotype=protein_coding;locus_tag=AD39_RS14155;old_locus_tag=AD39_2014 NZ_JJLH01000028.1 Protein Homology CDS 39180 40538 . - 0 ID=cds-WP_000438810.1;Parent=gene-AD39_RS14155;Dbxref=GenBank:WP_000438810.1;Name=WP_000438810.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=ydjE;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416283.1;locus_tag=AD39_RS14155;product=MFS transporter;protein_id=WP_000438810.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 40655 41413 . - . ID=gene-AD39_RS14150;Name=ydjF;gbkey=Gene;gene=ydjF;gene_biotype=protein_coding;locus_tag=AD39_RS14150;old_locus_tag=AD39_2015 NZ_JJLH01000028.1 Protein Homology CDS 40655 41413 . - 0 ID=cds-WP_000719096.1;Parent=gene-AD39_RS14150;Dbxref=GenBank:WP_000719096.1;Name=WP_000719096.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;gene=ydjF;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416284.1;locus_tag=AD39_RS14150;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_000719096.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 41550 42530 . - . ID=gene-AD39_RS14145;Name=ydjG;gbkey=Gene;gene=ydjG;gene_biotype=protein_coding;locus_tag=AD39_RS14145;old_locus_tag=AD39_2016 NZ_JJLH01000028.1 Protein Homology CDS 41550 42530 . - 0 ID=cds-WP_000723710.1;Parent=gene-AD39_RS14145;Dbxref=GenBank:WP_000723710.1;Name=WP_000723710.1;Ontology_term=GO:0019170;gbkey=CDS;gene=ydjG;go_function=methylglyoxal reductase (NADH) activity|0019170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416285.1;locus_tag=AD39_RS14145;product=NADH-dependent methylglyoxal reductase;protein_id=WP_000723710.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 42540 43487 . - . ID=gene-AD39_RS14140;Name=ydjH;gbkey=Gene;gene=ydjH;gene_biotype=protein_coding;locus_tag=AD39_RS14140;old_locus_tag=AD39_2017 NZ_JJLH01000028.1 Protein Homology CDS 42540 43487 . - 0 ID=cds-WP_001299568.1;Parent=gene-AD39_RS14140;Dbxref=GenBank:WP_001299568.1;Name=WP_001299568.1;Ontology_term=GO:0005975,GO:0019200,GO:0005829;gbkey=CDS;gene=ydjH;go_component=cytosol|0005829||IEA;go_function=carbohydrate kinase activity|0019200||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416286.4;locus_tag=AD39_RS14140;product=sugar kinase;protein_id=WP_001299568.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 43492 44328 . - . ID=gene-AD39_RS14135;Name=ydjI;gbkey=Gene;gene=ydjI;gene_biotype=protein_coding;locus_tag=AD39_RS14135;old_locus_tag=AD39_2018 NZ_JJLH01000028.1 Protein Homology CDS 43492 44328 . - 0 ID=cds-WP_000878895.1;Parent=gene-AD39_RS14135;Dbxref=GenBank:WP_000878895.1;Name=WP_000878895.1;Ontology_term=GO:0005975,GO:0016832;gbkey=CDS;gene=ydjI;go_function=aldehyde-lyase activity|0016832||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416287.1;locus_tag=AD39_RS14135;product=ketose-bisphosphate aldolase;protein_id=WP_000878895.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 44349 45392 . - . ID=gene-AD39_RS14130;Name=ydjJ;gbkey=Gene;gene=ydjJ;gene_biotype=protein_coding;locus_tag=AD39_RS14130;old_locus_tag=AD39_2019 NZ_JJLH01000028.1 Protein Homology CDS 44349 45392 . - 0 ID=cds-WP_000798114.1;Parent=gene-AD39_RS14130;Dbxref=GenBank:WP_000798114.1;Name=WP_000798114.1;gbkey=CDS;gene=ydjJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416288.1;locus_tag=AD39_RS14130;product=NAD(P)-dependent alcohol dehydrogenase;protein_id=WP_000798114.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 45409 46788 . - . ID=gene-AD39_RS14125;Name=ydjK;gbkey=Gene;gene=ydjK;gene_biotype=protein_coding;locus_tag=AD39_RS14125;old_locus_tag=AD39_2020 NZ_JJLH01000028.1 Protein Homology CDS 45409 46788 . - 0 ID=cds-WP_000435295.1;Parent=gene-AD39_RS14125;Dbxref=GenBank:WP_000435295.1;Name=WP_000435295.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=ydjK;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416289.1;locus_tag=AD39_RS14125;product=MFS transporter;protein_id=WP_000435295.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 46815 47891 . - . ID=gene-AD39_RS14120;Name=ydjL;gbkey=Gene;gene=ydjL;gene_biotype=protein_coding;locus_tag=AD39_RS14120;old_locus_tag=AD39_2021 NZ_JJLH01000028.1 Protein Homology CDS 46815 47891 . - 0 ID=cds-WP_032283274.1;Parent=gene-AD39_RS14120;Dbxref=GenBank:WP_032283274.1;Name=WP_032283274.1;gbkey=CDS;gene=ydjL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310512.1;locus_tag=AD39_RS14120;product=zinc-binding dehydrogenase;protein_id=WP_032283274.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 48261 48533 . - . ID=gene-AD39_RS14115;Name=yeaC;gbkey=Gene;gene=yeaC;gene_biotype=protein_coding;locus_tag=AD39_RS14115;old_locus_tag=AD39_2022 NZ_JJLH01000028.1 Protein Homology CDS 48261 48533 . - 0 ID=cds-WP_001299575.1;Parent=gene-AD39_RS14115;Dbxref=GenBank:WP_001299575.1;Name=WP_001299575.1;gbkey=CDS;gene=yeaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707337.2;locus_tag=AD39_RS14115;product=YeaC family protein;protein_id=WP_001299575.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 48575 48988 . - . ID=gene-AD39_RS14110;Name=msrB;gbkey=Gene;gene=msrB;gene_biotype=protein_coding;locus_tag=AD39_RS14110;old_locus_tag=AD39_2023 NZ_JJLH01000028.1 Protein Homology CDS 48575 48988 . - 0 ID=cds-WP_001284618.1;Parent=gene-AD39_RS14110;Dbxref=GenBank:WP_001284618.1;Name=WP_001284618.1;Ontology_term=GO:0006979,GO:0030091,GO:0033743;gbkey=CDS;gene=msrB;go_function=peptide-methionine (R)-S-oxide reductase activity|0033743||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310514.1;locus_tag=AD39_RS14110;product=peptide-methionine (R)-S-oxide reductase MsrB;protein_id=WP_001284618.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 49330 50325 . + . ID=gene-AD39_RS14105;Name=gapA;gbkey=Gene;gene=gapA;gene_biotype=protein_coding;locus_tag=AD39_RS14105;old_locus_tag=AD39_2024 NZ_JJLH01000028.1 Protein Homology CDS 49330 50325 . + 0 ID=cds-WP_000153502.1;Parent=gene-AD39_RS14105;Dbxref=GenBank:WP_000153502.1;Name=WP_000153502.1;gbkey=CDS;gene=gapA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006322611.1;locus_tag=AD39_RS14105;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_000153502.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 50409 51293 . + . ID=gene-AD39_RS14100;Name=yeaD;gbkey=Gene;gene=yeaD;gene_biotype=protein_coding;locus_tag=AD39_RS14100;old_locus_tag=AD39_2025 NZ_JJLH01000028.1 Protein Homology CDS 50409 51293 . + 0 ID=cds-WP_001335909.1;Parent=gene-AD39_RS14100;Dbxref=GenBank:WP_001335909.1;Name=WP_001335909.1;Ontology_term=GO:0005975,GO:0016857;gbkey=CDS;gene=yeaD;go_function=racemase and epimerase activity%2C acting on carbohydrates and derivatives|0016857||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416294.4;locus_tag=AD39_RS14100;product=D-hexose-6-phosphate mutarotase;protein_id=WP_001335909.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 51344 52198 . - . ID=gene-AD39_RS14095;Name=yeaE;gbkey=Gene;gene=yeaE;gene_biotype=protein_coding;locus_tag=AD39_RS14095;old_locus_tag=AD39_2026 NZ_JJLH01000028.1 Protein Homology CDS 51344 52198 . - 0 ID=cds-WP_001186350.1;Parent=gene-AD39_RS14095;Dbxref=GenBank:WP_001186350.1;Name=WP_001186350.1;gbkey=CDS;gene=yeaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310517.1;locus_tag=AD39_RS14095;product=methylglyoxal reductase YeaE;protein_id=WP_001186350.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 52288 53034 . - . ID=gene-AD39_RS14090;Name=mipA;gbkey=Gene;gene=mipA;gene_biotype=protein_coding;locus_tag=AD39_RS14090;old_locus_tag=AD39_2027 NZ_JJLH01000028.1 Protein Homology CDS 52288 53034 . - 0 ID=cds-WP_000163771.1;Parent=gene-AD39_RS14090;Dbxref=GenBank:WP_000163771.1;Name=WP_000163771.1;gbkey=CDS;gene=mipA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416296.1;locus_tag=AD39_RS14090;product=scaffolding protein MipA;protein_id=WP_000163771.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 53470 55404 . + . ID=gene-AD39_RS14085;Name=yeaG;gbkey=Gene;gene=yeaG;gene_biotype=protein_coding;locus_tag=AD39_RS14085;old_locus_tag=AD39_2028 NZ_JJLH01000028.1 Protein Homology CDS 53470 55404 . + 0 ID=cds-WP_001019882.1;Parent=gene-AD39_RS14085;Dbxref=GenBank:WP_001019882.1;Name=WP_001019882.1;gbkey=CDS;gene=yeaG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011411173.1;locus_tag=AD39_RS14085;product=protein kinase YeaG;protein_id=WP_001019882.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 55517 56800 . + . ID=gene-AD39_RS14080;Name=yeaH;gbkey=Gene;gene=yeaH;gene_biotype=protein_coding;locus_tag=AD39_RS14080;old_locus_tag=AD39_2029 NZ_JJLH01000028.1 Protein Homology CDS 55517 56800 . + 0 ID=cds-WP_000219686.1;Parent=gene-AD39_RS14080;Dbxref=GenBank:WP_000219686.1;Name=WP_000219686.1;gbkey=CDS;gene=yeaH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310520.1;locus_tag=AD39_RS14080;product=YeaH/YhbH family protein;protein_id=WP_000219686.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 56947 58422 . + . ID=gene-AD39_RS14075;Name=cdgI;gbkey=Gene;gene=cdgI;gene_biotype=protein_coding;locus_tag=AD39_RS14075;old_locus_tag=AD39_2030 NZ_JJLH01000028.1 Protein Homology CDS 56947 58422 . + 0 ID=cds-WP_000616404.1;Parent=gene-AD39_RS14075;Dbxref=GenBank:WP_000616404.1;Name=WP_000616404.1;Ontology_term=GO:0007165,GO:0005525,GO:0046872,GO:0052621;gbkey=CDS;gene=cdgI;go_function=GTP binding|0005525||IEA,metal ion binding|0046872||IEA,diguanylate cyclase activity|0052621||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416299.1;locus_tag=AD39_RS14075;product=sensor domain-containing diguanylate cyclase;protein_id=WP_000616404.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 58603 60093 . + . ID=gene-AD39_RS14070;Name=dgcJ;gbkey=Gene;gene=dgcJ;gene_biotype=protein_coding;locus_tag=AD39_RS14070;old_locus_tag=AD39_2031 NZ_JJLH01000028.1 Protein Homology CDS 58603 60093 . + 0 ID=cds-WP_000766131.1;Parent=gene-AD39_RS14070;Dbxref=GenBank:WP_000766131.1;Name=WP_000766131.1;Ontology_term=GO:0043709,GO:1902201,GO:0052621;gbkey=CDS;gene=dgcJ;go_function=diguanylate cyclase activity|0052621||IEA;go_process=cell adhesion involved in single-species biofilm formation|0043709||IEA,negative regulation of bacterial-type flagellum-dependent cell motility|1902201||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416300.2;locus_tag=AD39_RS14070;product=diguanylate cyclase DgcJ;protein_id=WP_000766131.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 60136 60639 . + . ID=gene-AD39_RS14065;Name=yeaK;gbkey=Gene;gene=yeaK;gene_biotype=protein_coding;locus_tag=AD39_RS14065;old_locus_tag=AD39_2032 NZ_JJLH01000028.1 Protein Homology CDS 60136 60639 . + 0 ID=cds-WP_000138051.1;Parent=gene-AD39_RS14065;Dbxref=GenBank:WP_000138051.1;Name=WP_000138051.1;gbkey=CDS;gene=yeaK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310523.1;locus_tag=AD39_RS14065;product=mischarged aminoacyl-tRNA deacylase;protein_id=WP_000138051.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 60640 60744 . - . ID=gene-AD39_RS14060;Name=yoaI;gbkey=Gene;gene=yoaI;gene_biotype=protein_coding;locus_tag=AD39_RS14060;old_locus_tag=AD39_2033 NZ_JJLH01000028.1 Protein Homology CDS 60640 60744 . - 0 ID=cds-WP_000999630.1;Parent=gene-AD39_RS14060;Dbxref=GenBank:WP_000999630.1;Name=WP_000999630.1;gbkey=CDS;gene=yoaI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416302.2;locus_tag=AD39_RS14060;product=small membrane protein YoaI;protein_id=WP_000999630.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 60914 61360 . + . ID=gene-AD39_RS14055;Name=yeaL;gbkey=Gene;gene=yeaL;gene_biotype=protein_coding;locus_tag=AD39_RS14055;old_locus_tag=AD39_2034 NZ_JJLH01000028.1 Protein Homology CDS 60914 61360 . + 0 ID=cds-WP_000460707.1;Parent=gene-AD39_RS14055;Dbxref=GenBank:WP_000460707.1;Name=WP_000460707.1;gbkey=CDS;gene=yeaL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416303.1;locus_tag=AD39_RS14055;product=DUF441 domain-containing protein;protein_id=WP_000460707.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 61317 62138 . - . ID=gene-AD39_RS14050;Name=nimR;gbkey=Gene;gene=nimR;gene_biotype=protein_coding;locus_tag=AD39_RS14050;old_locus_tag=AD39_2035 NZ_JJLH01000028.1 Protein Homology CDS 61317 62138 . - 0 ID=cds-WP_000972265.1;Parent=gene-AD39_RS14050;Dbxref=GenBank:WP_000972265.1;Name=WP_000972265.1;gbkey=CDS;gene=nimR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416304.1;locus_tag=AD39_RS14050;product=DNA-binding transcriptional regulator NimR;protein_id=WP_000972265.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 62235 63416 . + . ID=gene-AD39_RS14045;Name=nimT;gbkey=Gene;gene=nimT;gene_biotype=protein_coding;locus_tag=AD39_RS14045;old_locus_tag=AD39_2036 NZ_JJLH01000028.1 Protein Homology CDS 62235 63416 . + 0 ID=cds-WP_001645373.1;Parent=gene-AD39_RS14045;Dbxref=GenBank:WP_001645373.1;Name=WP_001645373.1;gbkey=CDS;gene=nimT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416305.1;locus_tag=AD39_RS14045;product=2-nitroimidazole transporter;protein_id=WP_001645373.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 63471 63818 . + . ID=gene-AD39_RS14040;Name=yeaO;gbkey=Gene;gene=yeaO;gene_biotype=protein_coding;locus_tag=AD39_RS14040;old_locus_tag=AD39_2037 NZ_JJLH01000028.1 Protein Homology CDS 63471 63818 . + 0 ID=cds-WP_023155541.1;Parent=gene-AD39_RS14040;Dbxref=GenBank:WP_023155541.1;Name=WP_023155541.1;gbkey=CDS;gene=yeaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416306.2;locus_tag=AD39_RS14040;product=DUF488 domain-containing protein;protein_id=WP_023155541.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 63840 64094 . - . ID=gene-AD39_RS14035;Name=yoaF;gbkey=Gene;gene=yoaF;gene_biotype=protein_coding;locus_tag=AD39_RS14035;old_locus_tag=AD39_2038 NZ_JJLH01000028.1 Protein Homology CDS 63840 64094 . - 0 ID=cds-WP_000691930.1;Parent=gene-AD39_RS14035;Dbxref=GenBank:WP_000691930.1;Name=WP_000691930.1;gbkey=CDS;gene=yoaF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416307.1;locus_tag=AD39_RS14035;product=DUF333 domain-containing lipoprotein YoaF;protein_id=WP_000691930.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 64277 65302 . + . ID=gene-AD39_RS14030;Name=dgcP;gbkey=Gene;gene=dgcP;gene_biotype=protein_coding;locus_tag=AD39_RS14030;old_locus_tag=AD39_2039 NZ_JJLH01000028.1 Protein Homology CDS 64277 65302 . + 0 ID=cds-WP_001310896.1;Parent=gene-AD39_RS14030;Dbxref=GenBank:WP_001310896.1;Name=WP_001310896.1;gbkey=CDS;gene=dgcP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416308.4;locus_tag=AD39_RS14030;product=diguanylate cyclase DgcP;protein_id=WP_001310896.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 65335 65433 . + . ID=gene-AD39_RS0124320;Name=yoaK;gbkey=Gene;gene=yoaK;gene_biotype=protein_coding;locus_tag=AD39_RS0124320 NZ_JJLH01000028.1 Protein Homology CDS 65335 65433 . + 0 ID=cds-WP_001219350.1;Parent=gene-AD39_RS0124320;Dbxref=GenBank:WP_001219350.1;Name=WP_001219350.1;gbkey=CDS;gene=yoaK;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791242.1;locus_tag=AD39_RS0124320;product=YoaK family small membrane protein;protein_id=WP_001219350.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 65436 65510 . + . ID=gene-AD39_RS28440;Name=yoaJ;gbkey=Gene;gene=yoaJ;gene_biotype=protein_coding;locus_tag=AD39_RS28440 NZ_JJLH01000028.1 Protein Homology CDS 65436 65510 . + 0 ID=cds-WP_001386836.1;Parent=gene-AD39_RS28440;Dbxref=GenBank:WP_001386836.1;Name=WP_001386836.1;gbkey=CDS;gene=yoaJ;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791243.1;locus_tag=AD39_RS28440;product=protein YoaJ;protein_id=WP_001386836.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 65569 65817 . - . ID=gene-AD39_RS14025;Name=yeaQ;gbkey=Gene;gene=yeaQ;gene_biotype=protein_coding;locus_tag=AD39_RS14025;old_locus_tag=AD39_2041 NZ_JJLH01000028.1 Protein Homology CDS 65569 65817 . - 0 ID=cds-WP_000512153.1;Parent=gene-AD39_RS14025;Dbxref=GenBank:WP_000512153.1;Name=WP_000512153.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yeaQ;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310531.1;locus_tag=AD39_RS14025;product=GlsB/YeaQ/YmgE family stress response membrane protein;protein_id=WP_000512153.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 65965 66147 . - . ID=gene-AD39_RS14020;Name=yoaG;gbkey=Gene;gene=yoaG;gene_biotype=protein_coding;locus_tag=AD39_RS14020;old_locus_tag=AD39_2042 NZ_JJLH01000028.1 Protein Homology CDS 65965 66147 . - 0 ID=cds-WP_000513737.1;Parent=gene-AD39_RS14020;Dbxref=GenBank:WP_000513737.1;Name=WP_000513737.1;gbkey=CDS;gene=yoaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310532.1;locus_tag=AD39_RS14020;product=DUF1869 domain-containing protein;protein_id=WP_000513737.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 66151 66510 . - . ID=gene-AD39_RS14015;Name=yeaR;gbkey=Gene;gene=yeaR;gene_biotype=protein_coding;locus_tag=AD39_RS14015;old_locus_tag=AD39_2043 NZ_JJLH01000028.1 Protein Homology CDS 66151 66510 . - 0 ID=cds-WP_000939317.1;Parent=gene-AD39_RS14015;Dbxref=GenBank:WP_000939317.1;Name=WP_000939317.1;gbkey=CDS;gene=yeaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310533.1;locus_tag=AD39_RS14015;product=DUF1971 domain-containing protein YeaR;protein_id=WP_000939317.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 66683 67321 . - . ID=gene-AD39_RS14010;Name=leuE;gbkey=Gene;gene=leuE;gene_biotype=protein_coding;locus_tag=AD39_RS14010;old_locus_tag=AD39_2045 NZ_JJLH01000028.1 Protein Homology CDS 66683 67321 . - 0 ID=cds-WP_000457207.1;Parent=gene-AD39_RS14010;Dbxref=GenBank:WP_000457207.1;Name=WP_000457207.1;Ontology_term=GO:0006865;gbkey=CDS;gene=leuE;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416312.1;locus_tag=AD39_RS14010;product=leucine efflux protein LeuE;protein_id=WP_000457207.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 67448 68371 . - . ID=gene-AD39_RS14005;Name=dmlR;gbkey=Gene;gene=dmlR;gene_biotype=protein_coding;locus_tag=AD39_RS14005;old_locus_tag=AD39_2046 NZ_JJLH01000028.1 Protein Homology CDS 67448 68371 . - 0 ID=cds-WP_001061578.1;Parent=gene-AD39_RS14005;Dbxref=GenBank:WP_001061578.1;Name=WP_001061578.1;gbkey=CDS;gene=dmlR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310535.2;locus_tag=AD39_RS14005;product=DNA-binding transcriptional regulator DmlR;protein_id=WP_001061578.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 68474 69559 . + . ID=gene-AD39_RS14000;Name=dmlA;gbkey=Gene;gene=dmlA;gene_biotype=protein_coding;locus_tag=AD39_RS14000;old_locus_tag=AD39_2047 NZ_JJLH01000028.1 Protein Homology CDS 68474 69559 . + 0 ID=cds-WP_000978495.1;Parent=gene-AD39_RS14000;Dbxref=GenBank:WP_000978495.1;Name=WP_000978495.1;gbkey=CDS;gene=dmlA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310536.1;locus_tag=AD39_RS14000;product=multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase;protein_id=WP_000978495.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 69810 71420 . + . ID=gene-AD39_RS13995;Name=yeaV;gbkey=Gene;gene=yeaV;gene_biotype=protein_coding;locus_tag=AD39_RS13995;old_locus_tag=AD39_2048 NZ_JJLH01000028.1 Protein Homology CDS 69810 71420 . + 0 ID=cds-WP_000987525.1;Parent=gene-AD39_RS13995;Dbxref=GenBank:WP_000987525.1;Name=WP_000987525.1;gbkey=CDS;gene=yeaV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310537.2;locus_tag=AD39_RS13995;product=BCCT family transporter YeaV;protein_id=WP_000987525.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 71452 72576 . + . ID=gene-AD39_RS13990;Name=yeaW;gbkey=Gene;gene=yeaW;gene_biotype=protein_coding;locus_tag=AD39_RS13990;old_locus_tag=AD39_2049 NZ_JJLH01000028.1 Protein Homology CDS 71452 72576 . + 0 ID=cds-WP_000067822.1;Parent=gene-AD39_RS13990;Dbxref=GenBank:WP_000067822.1;Name=WP_000067822.1;gbkey=CDS;gene=yeaW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310538.1;locus_tag=AD39_RS13990;product=carnitine monooxygenase%2C oxygenase subunit YeaW;protein_id=WP_000067822.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 72632 73597 . + . ID=gene-AD39_RS13985;Name=yeaX;gbkey=Gene;gene=yeaX;gene_biotype=protein_coding;locus_tag=AD39_RS13985;old_locus_tag=AD39_2050 NZ_JJLH01000028.1 Protein Homology CDS 72632 73597 . + 0 ID=cds-WP_001287005.1;Parent=gene-AD39_RS13985;Dbxref=GenBank:WP_001287005.1;Name=WP_001287005.1;gbkey=CDS;gene=yeaX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416317.1;locus_tag=AD39_RS13985;product=carnitine monooxygenase reductase subunit YeaX;protein_id=WP_001287005.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 73651 74766 . - . ID=gene-AD39_RS13980;Name=rnd;gbkey=Gene;gene=rnd;gene_biotype=protein_coding;locus_tag=AD39_RS13980;old_locus_tag=AD39_2051 NZ_JJLH01000028.1 Protein Homology CDS 73651 74766 . - 0 ID=cds-WP_001303529.1;Parent=gene-AD39_RS13980;Dbxref=GenBank:WP_001303529.1;Name=WP_001303529.1;Ontology_term=GO:0008033,GO:0003676,GO:0008408,GO:0033890;gbkey=CDS;gene=rnd;go_function=nucleic acid binding|0003676||IEA,3'-5' exonuclease activity|0008408||IEA,ribonuclease D activity|0033890||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310540.2;locus_tag=AD39_RS13980;product=ribonuclease D;protein_id=WP_001303529.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 74848 76533 . - . ID=gene-AD39_RS13975;Name=fadD;gbkey=Gene;gene=fadD;gene_biotype=protein_coding;locus_tag=AD39_RS13975;old_locus_tag=AD39_2052 NZ_JJLH01000028.1 Protein Homology CDS 74848 76533 . - 0 ID=cds-WP_000758422.1;Parent=gene-AD39_RS13975;Dbxref=GenBank:WP_000758422.1;Name=WP_000758422.1;gbkey=CDS;gene=fadD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416319.1;locus_tag=AD39_RS13975;product=long-chain-fatty-acid--CoA ligase FadD;protein_id=WP_000758422.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 76738 77319 . - . ID=gene-AD39_RS13970;Name=yeaY;gbkey=Gene;gene=yeaY;gene_biotype=protein_coding;locus_tag=AD39_RS13970;old_locus_tag=AD39_2053 NZ_JJLH01000028.1 Protein Homology CDS 76738 77319 . - 0 ID=cds-WP_032287561.1;Parent=gene-AD39_RS13970;Dbxref=GenBank:WP_032287561.1;Name=WP_032287561.1;gbkey=CDS;gene=yeaY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416320.1;locus_tag=AD39_RS13970;product=Slp family lipoprotein YeaY;protein_id=WP_032287561.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 77359 78054 . - . ID=gene-AD39_RS13965;Name=tsaB;gbkey=Gene;gene=tsaB;gene_biotype=protein_coding;locus_tag=AD39_RS13965;old_locus_tag=AD39_2054 NZ_JJLH01000028.1 Protein Homology CDS 77359 78054 . - 0 ID=cds-WP_001220979.1;Parent=gene-AD39_RS13965;Dbxref=GenBank:WP_001220979.1;Name=WP_001220979.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaB;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310543.1;locus_tag=AD39_RS13965;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB;protein_id=WP_001220979.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 78112 80022 . - . ID=gene-AD39_RS13960;Name=yoaA;gbkey=Gene;gene=yoaA;gene_biotype=protein_coding;locus_tag=AD39_RS13960;old_locus_tag=AD39_2055 NZ_JJLH01000028.1 Protein Homology CDS 78112 80022 . - 0 ID=cds-WP_000128847.1;Parent=gene-AD39_RS13960;Dbxref=GenBank:WP_000128847.1;Name=WP_000128847.1;Ontology_term=GO:0003676,GO:0003677,GO:0004386,GO:0005524;gbkey=CDS;gene=yoaA;go_function=nucleic acid binding|0003676||IEA,DNA binding|0003677||IEA,helicase activity|0004386||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310544.1;locus_tag=AD39_RS13960;product=ATP-dependent DNA helicase;protein_id=WP_000128847.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 80154 80498 . + . ID=gene-AD39_RS13955;Name=yoaB;gbkey=Gene;gene=yoaB;gene_biotype=protein_coding;locus_tag=AD39_RS13955;old_locus_tag=AD39_2056 NZ_JJLH01000028.1 Protein Homology CDS 80154 80498 . + 0 ID=cds-WP_001295493.1;Parent=gene-AD39_RS13955;Dbxref=GenBank:WP_001295493.1;Name=WP_001295493.1;gbkey=CDS;gene=yoaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416323.4;locus_tag=AD39_RS13955;product=RidA family protein;protein_id=WP_001295493.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 80921 81220 . + . ID=gene-AD39_RS13950;Name=yoaC;gbkey=Gene;gene=yoaC;gene_biotype=protein_coding;locus_tag=AD39_RS13950;old_locus_tag=AD39_2058 NZ_JJLH01000028.1 Protein Homology CDS 80921 81220 . + 0 ID=cds-WP_001111995.1;Parent=gene-AD39_RS13950;Dbxref=GenBank:WP_001111995.1;Name=WP_001111995.1;gbkey=CDS;gene=yoaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416324.2;locus_tag=AD39_RS13950;product=DUF1889 family protein;protein_id=WP_001111995.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 81340 81519 . - . ID=gene-AD39_RS13945;Name=yoaH;gbkey=Gene;gene=yoaH;gene_biotype=protein_coding;locus_tag=AD39_RS13945;old_locus_tag=AD39_2059 NZ_JJLH01000028.1 Protein Homology CDS 81340 81519 . - 0 ID=cds-WP_000457334.1;Parent=gene-AD39_RS13945;Dbxref=GenBank:WP_000457334.1;Name=WP_000457334.1;gbkey=CDS;gene=yoaH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310547.1;locus_tag=AD39_RS13945;product=YoaH family protein;protein_id=WP_000457334.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 81593 82954 . + . ID=gene-AD39_RS13940;Name=pabB;gbkey=Gene;gene=pabB;gene_biotype=protein_coding;locus_tag=AD39_RS13940;old_locus_tag=AD39_2060 NZ_JJLH01000028.1 Protein Homology CDS 81593 82954 . + 0 ID=cds-WP_000854972.1;Parent=gene-AD39_RS13940;Dbxref=GenBank:WP_000854972.1;Name=WP_000854972.1;Ontology_term=GO:0009396;gbkey=CDS;gene=pabB;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707310.1;locus_tag=AD39_RS13940;product=aminodeoxychorismate synthase component 1;protein_id=WP_000854972.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 82958 83536 . + . ID=gene-AD39_RS13935;Name=nudL;gbkey=Gene;gene=nudL;gene_biotype=protein_coding;locus_tag=AD39_RS13935;old_locus_tag=AD39_2061 NZ_JJLH01000028.1 Protein Homology CDS 82958 83536 . + 0 ID=cds-WP_000456725.1;Parent=gene-AD39_RS13935;Dbxref=GenBank:WP_000456725.1;Name=WP_000456725.1;Ontology_term=GO:0000287,GO:0010945;gbkey=CDS;gene=nudL;go_function=magnesium ion binding|0000287||IEA,coenzyme A diphosphatase activity|0010945||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310549.1;locus_tag=AD39_RS13935;product=CoA pyrophosphatase;protein_id=WP_000456725.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 83720 85084 . + . ID=gene-AD39_RS13930;Name=sdaA;gbkey=Gene;gene=sdaA;gene_biotype=protein_coding;locus_tag=AD39_RS13930;old_locus_tag=AD39_2062 NZ_JJLH01000028.1 Protein Homology CDS 83720 85084 . + 0 ID=cds-WP_000624298.1;Parent=gene-AD39_RS13930;Dbxref=GenBank:WP_000624298.1;Name=WP_000624298.1;gbkey=CDS;gene=sdaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416328.1;locus_tag=AD39_RS13930;product=L-serine ammonia-lyase;protein_id=WP_000624298.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 85215 86813 . + . ID=gene-AD39_RS13925;Name=pdeD;gbkey=Gene;gene=pdeD;gene_biotype=protein_coding;locus_tag=AD39_RS13925;old_locus_tag=AD39_2063 NZ_JJLH01000028.1 Protein Homology CDS 85215 86813 . + 0 ID=cds-WP_001295494.1;Parent=gene-AD39_RS13925;Dbxref=GenBank:WP_001295494.1;Name=WP_001295494.1;Ontology_term=GO:0007165,GO:0071111,GO:0005886;gbkey=CDS;gene=pdeD;go_component=plasma membrane|0005886||IEA;go_function=cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416329.4;locus_tag=AD39_RS13925;product=EAL domain-containing protein;protein_id=WP_001295494.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 86817 88373 . - . ID=gene-AD39_RS13920;Name=yoaE;gbkey=Gene;gene=yoaE;gene_biotype=protein_coding;locus_tag=AD39_RS13920;old_locus_tag=AD39_2064 NZ_JJLH01000028.1 Protein Homology CDS 86817 88373 . - 0 ID=cds-WP_000394983.1;Parent=gene-AD39_RS13920;Dbxref=GenBank:WP_000394983.1;Name=WP_000394983.1;gbkey=CDS;gene=yoaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310552.1;locus_tag=AD39_RS13920;product=CNNM family cation transport protein YoaE;protein_id=WP_000394983.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 88361 88519 . - . ID=gene-AD39_RS29955;Name=yoaL;gbkey=Gene;gene=yoaL;gene_biotype=protein_coding;locus_tag=AD39_RS29955 NZ_JJLH01000028.1 Protein Homology CDS 88361 88519 . - 0 ID=cds-WP_001327808.1;Parent=gene-AD39_RS29955;Dbxref=GenBank:WP_001327808.1;Name=WP_001327808.1;gbkey=CDS;gene=yoaL;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518795.2;locus_tag=AD39_RS29955;product=protein YoaL;protein_id=WP_001327808.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 88836 89807 . + . ID=gene-AD39_RS13915;Name=manX;gbkey=Gene;gene=manX;gene_biotype=protein_coding;locus_tag=AD39_RS13915;old_locus_tag=AD39_2065 NZ_JJLH01000028.1 Protein Homology CDS 88836 89807 . + 0 ID=cds-WP_000150543.1;Parent=gene-AD39_RS13915;Dbxref=GenBank:WP_000150543.1;Name=WP_000150543.1;Ontology_term=GO:0009401,GO:0008982;gbkey=CDS;gene=manX;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310554.1;locus_tag=AD39_RS13915;product=PTS mannose transporter subunit IIAB;protein_id=WP_000150543.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 89870 90670 . + . ID=gene-AD39_RS13910;Name=manY;gbkey=Gene;gene=manY;gene_biotype=protein_coding;locus_tag=AD39_RS13910;old_locus_tag=AD39_2066 NZ_JJLH01000028.1 Protein Homology CDS 89870 90670 . + 0 ID=cds-WP_000406926.1;Parent=gene-AD39_RS13910;Dbxref=GenBank:WP_000406926.1;Name=WP_000406926.1;gbkey=CDS;gene=manY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002910918.1;locus_tag=AD39_RS13910;product=PTS mannose transporter subunit IIC;protein_id=WP_000406926.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 90683 91534 . + . ID=gene-AD39_RS13905;Name=manZ;gbkey=Gene;gene=manZ;gene_biotype=protein_coding;locus_tag=AD39_RS13905;old_locus_tag=AD39_2067 NZ_JJLH01000028.1 Protein Homology CDS 90683 91534 . + 0 ID=cds-WP_000228655.1;Parent=gene-AD39_RS13905;Dbxref=GenBank:WP_000228655.1;Name=WP_000228655.1;gbkey=CDS;gene=manZ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020804907.1;locus_tag=AD39_RS13905;product=PTS mannose transporter subunit IID;protein_id=WP_000228655.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 91590 92048 . + . ID=gene-AD39_RS13900;Name=yobD;gbkey=Gene;gene=yobD;gene_biotype=protein_coding;locus_tag=AD39_RS13900;old_locus_tag=AD39_2068 NZ_JJLH01000028.1 Protein Homology CDS 91590 92048 . + 0 ID=cds-WP_000156255.1;Parent=gene-AD39_RS13900;Dbxref=GenBank:WP_000156255.1;Name=WP_000156255.1;gbkey=CDS;gene=yobD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416334.1;locus_tag=AD39_RS13900;product=DUF986 family protein;protein_id=WP_000156255.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 92477 93043 . + . ID=gene-AD39_RS13895;Name=mntP;gbkey=Gene;gene=mntP;gene_biotype=protein_coding;locus_tag=AD39_RS13895;old_locus_tag=AD39_2069 NZ_JJLH01000028.1 Protein Homology CDS 92477 93043 . + 0 ID=cds-WP_001296134.1;Parent=gene-AD39_RS13895;Dbxref=GenBank:WP_001296134.1;Name=WP_001296134.1;gbkey=CDS;gene=mntP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416335.4;locus_tag=AD39_RS13895;product=manganese efflux pump MntP;protein_id=WP_001296134.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 93040 93849 . - . ID=gene-AD39_RS13890;Name=rlmA;gbkey=Gene;gene=rlmA;gene_biotype=protein_coding;locus_tag=AD39_RS13890;old_locus_tag=AD39_2070 NZ_JJLH01000028.1 Protein Homology CDS 93040 93849 . - 0 ID=cds-WP_000010129.1;Parent=gene-AD39_RS13890;Dbxref=GenBank:WP_000010129.1;Name=WP_000010129.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rlmA;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707298.1;locus_tag=AD39_RS13890;product=23S rRNA (guanine(745)-N(1))-methyltransferase;protein_id=WP_000010129.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 94015 94224 . - . ID=gene-AD39_RS13885;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;gene_synonym=gicA,msmC;locus_tag=AD39_RS13885;old_locus_tag=AD39_2071 NZ_JJLH01000028.1 Protein Homology CDS 94015 94224 . - 0 ID=cds-WP_001062678.1;Parent=gene-AD39_RS13885;Dbxref=GenBank:WP_001062678.1;Name=WP_001062678.1;Ontology_term=GO:0031564,GO:0001072,GO:0003697,GO:0003723;gbkey=CDS;gene=cspE;go_function=transcription antitermination factor activity%2C RNA binding|0001072||IEA,single-stranded DNA binding|0003697||IEA,RNA binding|0003723||IEA;go_process=transcription antitermination|0031564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310560.1;locus_tag=AD39_RS13885;product=transcription antiterminator/RNA stability regulator CspE;protein_id=WP_001062678.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 94237 94380 . - . ID=gene-AD39_RS13880;Name=yobF;gbkey=Gene;gene=yobF;gene_biotype=protein_coding;locus_tag=AD39_RS13880;old_locus_tag=AD39_2072 NZ_JJLH01000028.1 Protein Homology CDS 94237 94380 . - 0 ID=cds-WP_001295496.1;Parent=gene-AD39_RS13880;Dbxref=GenBank:WP_001295496.1;Name=WP_001295496.1;gbkey=CDS;gene=yobF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416338.1;locus_tag=AD39_RS13880;product=DUF2627 domain-containing protein;protein_id=WP_001295496.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 95051 95338 . - . ID=gene-AD39_RS13875;Name=yebO;gbkey=Gene;gene=yebO;gene_biotype=protein_coding;locus_tag=AD39_RS13875;old_locus_tag=AD39_2073 NZ_JJLH01000028.1 Protein Homology CDS 95051 95338 . - 0 ID=cds-WP_001006866.1;Parent=gene-AD39_RS13875;Dbxref=GenBank:WP_001006866.1;Name=WP_001006866.1;gbkey=CDS;gene=yebO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416339.1;locus_tag=AD39_RS13875;product=YebO family protein;protein_id=WP_001006866.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 95413 95556 . - . ID=gene-AD39_RS13870;Name=mgrB;gbkey=Gene;gene=mgrB;gene_biotype=protein_coding;locus_tag=AD39_RS13870;old_locus_tag=AD39_2074 NZ_JJLH01000028.1 Protein Homology CDS 95413 95556 . - 0 ID=cds-WP_000714550.1;Parent=gene-AD39_RS13870;Dbxref=GenBank:WP_000714550.1;Name=WP_000714550.1;gbkey=CDS;gene=mgrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416340.1;locus_tag=AD39_RS13870;product=PhoP/PhoQ regulator MgrB;protein_id=WP_000714550.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 95715 95954 . + . ID=gene-AD39_RS13865;Name=yobH;gbkey=Gene;gene=yobH;gene_biotype=protein_coding;locus_tag=AD39_RS13865;old_locus_tag=AD39_2075 NZ_JJLH01000028.1 Protein Homology CDS 95715 95954 . + 0 ID=cds-WP_001211011.1;Parent=gene-AD39_RS13865;Dbxref=GenBank:WP_001211011.1;Name=WP_001211011.1;gbkey=CDS;gene=yobH;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588456.1;locus_tag=AD39_RS13865;product=YobH family protein;protein_id=WP_001211011.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 96097 96888 . - . ID=gene-AD39_RS13860;Name=kdgR;gbkey=Gene;gene=kdgR;gene_biotype=protein_coding;locus_tag=AD39_RS13860;old_locus_tag=AD39_2076 NZ_JJLH01000028.1 Protein Homology CDS 96097 96888 . - 0 ID=cds-WP_001262174.1;Parent=gene-AD39_RS13860;Dbxref=GenBank:WP_001262174.1;Name=WP_001262174.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=kdgR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310564.1;locus_tag=AD39_RS13860;product=DNA-binding transcriptional regulator KdgR;protein_id=WP_001262174.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 97065 98438 . + . ID=gene-AD39_RS13855;Name=yebQ;gbkey=Gene;gene=yebQ;gene_biotype=protein_coding;locus_tag=AD39_RS13855;old_locus_tag=AD39_2077 NZ_JJLH01000028.1 Protein Homology CDS 97065 98438 . + 0 ID=cds-WP_001127216.1;Parent=gene-AD39_RS13855;Dbxref=GenBank:WP_001127216.1;Name=WP_001127216.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yebQ;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416342.4;locus_tag=AD39_RS13855;product=MFS transporter;protein_id=WP_001127216.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 98484 99365 . - . ID=gene-AD39_RS13850;Name=htpX;gbkey=Gene;gene=htpX;gene_biotype=protein_coding;locus_tag=AD39_RS13850;old_locus_tag=AD39_2078 NZ_JJLH01000028.1 Protein Homology CDS 98484 99365 . - 0 ID=cds-WP_000984517.1;Parent=gene-AD39_RS13850;Dbxref=GenBank:WP_000984517.1;Name=WP_000984517.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=htpX;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014229823.1;locus_tag=AD39_RS13850;product=protease HtpX;protein_id=WP_000984517.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 99557 101605 . - . ID=gene-AD39_RS13845;Name=prc;gbkey=Gene;gene=prc;gene_biotype=protein_coding;locus_tag=AD39_RS13845;old_locus_tag=AD39_2079 NZ_JJLH01000028.1 Protein Homology CDS 99557 101605 . - 0 ID=cds-WP_001055776.1;Parent=gene-AD39_RS13845;Dbxref=GenBank:WP_001055776.1;Name=WP_001055776.1;Ontology_term=GO:0006508,GO:0005515,GO:0008236;gbkey=CDS;gene=prc;go_function=protein binding|0005515||IEA,serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310567.1;locus_tag=AD39_RS13845;product=carboxy terminal-processing peptidase;protein_id=WP_001055776.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 101625 102323 . - . ID=gene-AD39_RS13840;Name=proQ;gbkey=Gene;gene=proQ;gene_biotype=protein_coding;locus_tag=AD39_RS13840;old_locus_tag=AD39_2080 NZ_JJLH01000028.1 Protein Homology CDS 101625 102323 . - 0 ID=cds-WP_000431370.1;Parent=gene-AD39_RS13840;Dbxref=GenBank:WP_000431370.1;Name=WP_000431370.1;Ontology_term=GO:0010608,GO:0003723,GO:0033592,GO:0034057;gbkey=CDS;gene=proQ;go_function=RNA binding|0003723||IEA,RNA strand annealing activity|0033592||IEA,RNA strand-exchange activity|0034057||IEA;go_process=post-transcriptional regulation of gene expression|0010608||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707288.3;locus_tag=AD39_RS13840;product=RNA chaperone ProQ;protein_id=WP_000431370.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 102420 102917 . - . ID=gene-AD39_RS13835;Name=msrC;gbkey=Gene;gene=msrC;gene_biotype=protein_coding;locus_tag=AD39_RS13835;old_locus_tag=AD39_2081 NZ_JJLH01000028.1 Protein Homology CDS 102420 102917 . - 0 ID=cds-WP_001043882.1;Parent=gene-AD39_RS13835;Dbxref=GenBank:WP_001043882.1;Name=WP_001043882.1;gbkey=CDS;gene=msrC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707287.1;locus_tag=AD39_RS13835;product=L-methionine (R)-S-oxide reductase;protein_id=WP_001043882.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 103047 104330 . + . ID=gene-AD39_RS13830;Name=yebS;gbkey=Gene;gene=yebS;gene_biotype=protein_coding;locus_tag=AD39_RS13830;old_locus_tag=AD39_2082 NZ_JJLH01000028.1 Protein Homology CDS 103047 104330 . + 0 ID=cds-WP_001207283.1;Parent=gene-AD39_RS13830;Dbxref=GenBank:WP_001207283.1;Name=WP_001207283.1;gbkey=CDS;gene=yebS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310570.1;locus_tag=AD39_RS13830;product=membrane integrity lipid transport subunit YebS;protein_id=WP_001207283.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 104299 106932 . + . ID=gene-AD39_RS13825;Name=yebT;gbkey=Gene;gene=yebT;gene_biotype=protein_coding;locus_tag=AD39_RS13825;old_locus_tag=AD39_2083 NZ_JJLH01000028.1 Protein Homology CDS 104299 106932 . + 0 ID=cds-WP_001297532.1;Parent=gene-AD39_RS13825;Dbxref=GenBank:WP_001297532.1;Name=WP_001297532.1;gbkey=CDS;gene=yebT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416348.2;locus_tag=AD39_RS13825;product=lipid-binding membrane homeostasis protein YebT;protein_id=WP_001297532.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 107012 108451 . + . ID=gene-AD39_RS13820;Name=rsmF;gbkey=Gene;gene=rsmF;gene_biotype=protein_coding;locus_tag=AD39_RS13820;old_locus_tag=AD39_2084 NZ_JJLH01000028.1 Protein Homology CDS 107012 108451 . + 0 ID=cds-WP_000057022.1;Parent=gene-AD39_RS13820;Dbxref=GenBank:WP_000057022.1;Name=WP_000057022.1;Ontology_term=GO:0001510,GO:0003723,GO:0008649;gbkey=CDS;gene=rsmF;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;go_process=RNA methylation|0001510||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416349.2;locus_tag=AD39_RS13820;product=16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF;protein_id=WP_000057022.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 108569 108805 . + . ID=gene-AD39_RS13815;Name=yebV;gbkey=Gene;gene=yebV;gene_biotype=protein_coding;locus_tag=AD39_RS13815;old_locus_tag=AD39_2085 NZ_JJLH01000028.1 Protein Homology CDS 108569 108805 . + 0 ID=cds-WP_001295499.1;Parent=gene-AD39_RS13815;Dbxref=GenBank:WP_001295499.1;Name=WP_001295499.1;gbkey=CDS;gene=yebV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707284.2;locus_tag=AD39_RS13815;product=YebV family protein;protein_id=WP_001295499.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 108910 109101 . + . ID=gene-AD39_RS13810;Name=yebW;gbkey=Gene;gene=yebW;gene_biotype=protein_coding;locus_tag=AD39_RS13810;old_locus_tag=AD39_2086 NZ_JJLH01000028.1 Protein Homology CDS 108910 109101 . + 0 ID=cds-WP_001296140.1;Parent=gene-AD39_RS13810;Dbxref=GenBank:WP_001296140.1;Name=WP_001296140.1;gbkey=CDS;gene=yebW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416351.2;locus_tag=AD39_RS13810;product=YebW family protein;protein_id=WP_001296140.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 109102 109758 . - . ID=gene-AD39_RS13805;Name=pphA;gbkey=Gene;gene=pphA;gene_biotype=protein_coding;locus_tag=AD39_RS13805;old_locus_tag=AD39_2087 NZ_JJLH01000028.1 Protein Homology CDS 109102 109758 . - 0 ID=cds-WP_000812712.1;Parent=gene-AD39_RS13805;Dbxref=GenBank:WP_000812712.1;Name=WP_000812712.1;Ontology_term=GO:0016787;gbkey=CDS;gene=pphA;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416352.4;locus_tag=AD39_RS13805;product=protein-serine/threonine phosphatase;protein_id=WP_000812712.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 110154 110495 . - . ID=gene-AD39_RS13800;Name=yebY;gbkey=Gene;gene=yebY;gene_biotype=protein_coding;locus_tag=AD39_RS13800;old_locus_tag=AD39_2088 NZ_JJLH01000028.1 Protein Homology CDS 110154 110495 . - 0 ID=cds-WP_000976472.1;Parent=gene-AD39_RS13800;Dbxref=GenBank:WP_000976472.1;Name=WP_000976472.1;gbkey=CDS;gene=yebY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310576.1;locus_tag=AD39_RS13800;product=YebY family protein;protein_id=WP_000976472.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 110508 111380 . - . ID=gene-AD39_RS13795;Name=copD;gbkey=Gene;gene=copD;gene_biotype=protein_coding;locus_tag=AD39_RS13795;old_locus_tag=AD39_2089 NZ_JJLH01000028.1 Protein Homology CDS 110508 111380 . - 0 ID=cds-WP_000879280.1;Parent=gene-AD39_RS13795;Dbxref=GenBank:WP_000879280.1;Name=WP_000879280.1;Ontology_term=GO:0006825,GO:0016020;gbkey=CDS;gene=copD;go_component=membrane|0016020||IEA;go_process=copper ion transport|0006825||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416354.1;locus_tag=AD39_RS13795;product=copper homeostasis membrane protein CopD;protein_id=WP_000879280.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 111384 111758 . - . ID=gene-AD39_RS13790;Name=yobA;gbkey=Gene;gene=yobA;gene_biotype=protein_coding;locus_tag=AD39_RS13790;old_locus_tag=AD39_2090 NZ_JJLH01000028.1 Protein Homology CDS 111384 111758 . - 0 ID=cds-WP_000204700.1;Parent=gene-AD39_RS13790;Dbxref=GenBank:WP_000204700.1;Name=WP_000204700.1;Ontology_term=GO:0006825,GO:0046688,GO:0005507;gbkey=CDS;gene=yobA;go_function=copper ion binding|0005507||IEA;go_process=copper ion transport|0006825||IEA,response to copper ion|0046688||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416355.1;locus_tag=AD39_RS13790;product=CopC domain-containing protein YobA;protein_id=WP_000204700.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 111897 112127 . + . ID=gene-AD39_RS13785;Name=holE;gbkey=Gene;gene=holE;gene_biotype=protein_coding;locus_tag=AD39_RS13785;old_locus_tag=AD39_2091 NZ_JJLH01000028.1 Protein Homology CDS 111897 112127 . + 0 ID=cds-WP_000916763.1;Parent=gene-AD39_RS13785;Dbxref=GenBank:WP_000916763.1;Name=WP_000916763.1;gbkey=CDS;gene=holE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310579.1;locus_tag=AD39_RS13785;product=DNA polymerase III subunit theta;protein_id=WP_000916763.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 112229 112885 . + . ID=gene-AD39_RS13780;Name=yobB;gbkey=Gene;gene=yobB;gene_biotype=protein_coding;locus_tag=AD39_RS13780;old_locus_tag=AD39_2092 NZ_JJLH01000028.1 Protein Homology CDS 112229 112885 . + 0 ID=cds-WP_000011658.1;Parent=gene-AD39_RS13780;Dbxref=GenBank:WP_000011658.1;Name=WP_000011658.1;gbkey=CDS;gene=yobB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416357.1;locus_tag=AD39_RS13780;product=carbon-nitrogen hydrolase family protein YobB;protein_id=WP_000011658.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 112909 113571 . + . ID=gene-AD39_RS13775;Name=exoX;gbkey=Gene;gene=exoX;gene_biotype=protein_coding;locus_tag=AD39_RS13775;old_locus_tag=AD39_2093 NZ_JJLH01000028.1 Protein Homology CDS 112909 113571 . + 0 ID=cds-WP_000944256.1;Parent=gene-AD39_RS13775;Dbxref=GenBank:WP_000944256.1;Name=WP_000944256.1;gbkey=CDS;gene=exoX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416358.1;locus_tag=AD39_RS13775;product=exodeoxyribonuclease X;protein_id=WP_000944256.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 113568 115628 . - . ID=gene-AD39_RS13770;Name=ptrB;gbkey=Gene;gene=ptrB;gene_biotype=protein_coding;locus_tag=AD39_RS13770;old_locus_tag=AD39_2094 NZ_JJLH01000028.1 Protein Homology CDS 113568 115628 . - 0 ID=cds-WP_000936951.1;Parent=gene-AD39_RS13770;Dbxref=GenBank:WP_000936951.1;Name=WP_000936951.1;gbkey=CDS;gene=ptrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416359.1;locus_tag=AD39_RS13770;product=oligopeptidase B;protein_id=WP_000936951.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 115837 116496 . - . ID=gene-AD39_RS13765;Name=yebE;gbkey=Gene;gene=yebE;gene_biotype=protein_coding;locus_tag=AD39_RS13765;old_locus_tag=AD39_2095 NZ_JJLH01000028.1 Protein Homology CDS 115837 116496 . - 0 ID=cds-WP_000024745.1;Parent=gene-AD39_RS13765;Dbxref=GenBank:WP_000024745.1;Name=WP_000024745.1;gbkey=CDS;gene=yebE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310583.1;locus_tag=AD39_RS13765;product=tellurite resistance TerB family protein;protein_id=WP_000024745.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 116823 117179 . - . ID=gene-AD39_RS13760;Name=yebF;gbkey=Gene;gene=yebF;gene_biotype=protein_coding;locus_tag=AD39_RS13760;old_locus_tag=AD39_2096 NZ_JJLH01000028.1 Protein Homology CDS 116823 117179 . - 0 ID=cds-WP_001295500.1;Parent=gene-AD39_RS13760;Dbxref=GenBank:WP_001295500.1;Name=WP_001295500.1;gbkey=CDS;gene=yebF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310584.2;locus_tag=AD39_RS13760;product=protein YebF;protein_id=WP_001295500.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 117246 117536 . - . ID=gene-AD39_RS13755;Name=yebG;gbkey=Gene;gene=yebG;gene_biotype=protein_coding;locus_tag=AD39_RS13755;old_locus_tag=AD39_2097 NZ_JJLH01000028.1 Protein Homology CDS 117246 117536 . - 0 ID=cds-WP_000257738.1;Parent=gene-AD39_RS13755;Dbxref=GenBank:WP_000257738.1;Name=WP_000257738.1;gbkey=CDS;gene=yebG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310585.1;locus_tag=AD39_RS13755;product=DNA damage-inducible protein YebG;protein_id=WP_000257738.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 117670 118848 . + . ID=gene-AD39_RS13750;Name=purT;gbkey=Gene;gene=purT;gene_biotype=protein_coding;locus_tag=AD39_RS13750;old_locus_tag=AD39_2098 NZ_JJLH01000028.1 Protein Homology CDS 117670 118848 . + 0 ID=cds-WP_000173475.1;Parent=gene-AD39_RS13750;Dbxref=GenBank:WP_000173475.1;Name=WP_000173475.1;Ontology_term=GO:0009152,GO:0000287,GO:0004644,GO:0005524;gbkey=CDS;gene=purT;go_function=magnesium ion binding|0000287||IEA,phosphoribosylglycinamide formyltransferase activity|0004644||IEA,ATP binding|0005524||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310586.1;locus_tag=AD39_RS13750;product=formate-dependent phosphoribosylglycinamide formyltransferase;protein_id=WP_000173475.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 118904 119545 . - . ID=gene-AD39_RS13745;Name=kdgA;gbkey=Gene;gene=kdgA;gene_biotype=protein_coding;gene_synonym=eda;locus_tag=AD39_RS13745;old_locus_tag=AD39_2099 NZ_JJLH01000028.1 Protein Homology CDS 118904 119545 . - 0 ID=cds-WP_000800512.1;Parent=gene-AD39_RS13745;Dbxref=GenBank:WP_000800512.1;Name=WP_000800512.1;gbkey=CDS;gene=kdgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310587.1;locus_tag=AD39_RS13745;product=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase;protein_id=WP_000800512.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 119582 121393 . - . ID=gene-AD39_RS13740;Name=edd;gbkey=Gene;gene=edd;gene_biotype=protein_coding;locus_tag=AD39_RS13740;old_locus_tag=AD39_2100 NZ_JJLH01000028.1 Protein Homology CDS 119582 121393 . - 0 ID=cds-WP_001069467.1;Parent=gene-AD39_RS13740;Dbxref=GenBank:WP_001069467.1;Name=WP_001069467.1;Ontology_term=GO:0009255,GO:0004456;gbkey=CDS;gene=edd;go_function=phosphogluconate dehydratase activity|0004456||IEA;go_process=Entner-Doudoroff pathway through 6-phosphogluconate|0009255||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310588.1;locus_tag=AD39_RS13740;product=phosphogluconate dehydratase;protein_id=WP_001069467.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 121628 123103 . - . ID=gene-AD39_RS13735;Name=zwf;gbkey=Gene;gene=zwf;gene_biotype=protein_coding;locus_tag=AD39_RS13735;old_locus_tag=AD39_2101 NZ_JJLH01000028.1 Protein Homology CDS 121628 123103 . - 0 ID=cds-WP_000301727.1;Parent=gene-AD39_RS13735;Dbxref=GenBank:WP_000301727.1;Name=WP_000301727.1;Ontology_term=GO:0006006,GO:0006098,GO:0004345,GO:0016614,GO:0050661;gbkey=CDS;gene=zwf;go_function=glucose-6-phosphate dehydrogenase activity|0004345||IEA,oxidoreductase activity%2C acting on CH-OH group of donors|0016614||IEA,NADP binding|0050661||IEA;go_process=glucose metabolic process|0006006||IEA,pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120712.1;locus_tag=AD39_RS13735;product=glucose-6-phosphate dehydrogenase;protein_id=WP_000301727.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 123441 124310 . + . ID=gene-AD39_RS13730;Name=hexR;gbkey=Gene;gene=hexR;gene_biotype=protein_coding;gene_synonym=yebK;locus_tag=AD39_RS13730;old_locus_tag=AD39_2102 NZ_JJLH01000028.1 Protein Homology CDS 123441 124310 . + 0 ID=cds-WP_032283277.1;Parent=gene-AD39_RS13730;Dbxref=GenBank:WP_032283277.1;Name=WP_032283277.1;gbkey=CDS;gene=hexR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310590.1;locus_tag=AD39_RS13730;product=DNA-binding transcriptional regulator HexR;protein_id=WP_032283277.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 124438 125880 . + . ID=gene-AD39_RS13725;Name=pyk;gbkey=Gene;gene=pyk;gene_biotype=protein_coding;locus_tag=AD39_RS13725;old_locus_tag=AD39_2103 NZ_JJLH01000028.1 Protein Homology CDS 124438 125880 . + 0 ID=cds-WP_000091148.1;Parent=gene-AD39_RS13725;Dbxref=GenBank:WP_000091148.1;Name=WP_000091148.1;Ontology_term=GO:0006096,GO:0000287,GO:0004743,GO:0030955;gbkey=CDS;gene=pyk;go_function=magnesium ion binding|0000287||IEA,pyruvate kinase activity|0004743||IEA,potassium ion binding|0030955||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120709.1;locus_tag=AD39_RS13725;product=pyruvate kinase;protein_id=WP_000091148.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 125940 126782 . - . ID=gene-AD39_RS13720;Name=AD39_RS13720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13720;old_locus_tag=AD39_2104 NZ_JJLH01000028.1 Protein Homology CDS 125940 126782 . - 0 ID=cds-WP_000546447.1;Parent=gene-AD39_RS13720;Dbxref=GenBank:WP_000546447.1;Name=WP_000546447.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016243610.1;locus_tag=AD39_RS13720;product=Nif3-like dinuclear metal center hexameric protein;protein_id=WP_000546447.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 126805 127644 . - . ID=gene-AD39_RS13715;Name=AD39_RS13715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13715;old_locus_tag=AD39_2105 NZ_JJLH01000028.1 Protein Homology CDS 126805 127644 . - 0 ID=cds-WP_001441011.1;Parent=gene-AD39_RS13715;Dbxref=GenBank:WP_001441011.1;Name=WP_001441011.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001342239.1;locus_tag=AD39_RS13715;product=alpha/beta hydrolase;protein_id=WP_001441011.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 127737 128534 . - . ID=gene-AD39_RS13710;Name=AD39_RS13710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13710;old_locus_tag=AD39_2106 NZ_JJLH01000028.1 Protein Homology CDS 127737 128534 . - 0 ID=cds-WP_032283278.1;Parent=gene-AD39_RS13710;Dbxref=GenBank:WP_032283278.1;Name=WP_032283278.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000582547.1;locus_tag=AD39_RS13710;product=amidohydrolase family protein;protein_id=WP_032283278.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 128556 130355 . - . ID=gene-AD39_RS13705;Name=AD39_RS13705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13705;old_locus_tag=AD39_2107 NZ_JJLH01000028.1 Protein Homology CDS 128556 130355 . - 0 ID=cds-WP_000633895.1;Parent=gene-AD39_RS13705;Dbxref=GenBank:WP_000633895.1;Name=WP_000633895.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000633896.1;locus_tag=AD39_RS13705;product=glycoside hydrolase family 13 protein;protein_id=WP_000633895.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 130375 131208 . - . ID=gene-AD39_RS13700;Name=AD39_RS13700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13700;old_locus_tag=AD39_2108 NZ_JJLH01000028.1 Protein Homology CDS 130375 131208 . - 0 ID=cds-WP_001583591.1;Parent=gene-AD39_RS13700;Dbxref=GenBank:WP_001583591.1;Name=WP_001583591.1;Ontology_term=GO:0008643,GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001583591.1;locus_tag=AD39_RS13700;product=sugar ABC transporter permease;protein_id=WP_001583591.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 131211 132500 . - . ID=gene-AD39_RS13695;Name=AD39_RS13695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13695;old_locus_tag=AD39_2109 NZ_JJLH01000028.1 Protein Homology CDS 131211 132500 . - 0 ID=cds-WP_001096086.1;Parent=gene-AD39_RS13695;Dbxref=GenBank:WP_001096086.1;Name=WP_001096086.1;Ontology_term=GO:0008643,GO:0055085,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016243614.1;locus_tag=AD39_RS13695;product=carbohydrate ABC transporter permease;protein_id=WP_001096086.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 132503 133735 . - . ID=gene-AD39_RS13690;Name=AD39_RS13690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13690;old_locus_tag=AD39_2110 NZ_JJLH01000028.1 Protein Homology CDS 132503 133735 . - 0 ID=cds-WP_000777715.1;Parent=gene-AD39_RS13690;Dbxref=GenBank:WP_000777715.1;Name=WP_000777715.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000777725.1;locus_tag=AD39_RS13690;product=maltose ABC transporter substrate-binding protein;protein_id=WP_000777715.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 134008 135045 . + . ID=gene-AD39_RS13685;Name=AD39_RS13685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13685;old_locus_tag=AD39_2111 NZ_JJLH01000028.1 Protein Homology CDS 134008 135045 . + 0 ID=cds-WP_000242979.1;Parent=gene-AD39_RS13685;Dbxref=GenBank:WP_000242979.1;Name=WP_000242979.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000242972.1;locus_tag=AD39_RS13685;product=hypothetical protein;protein_id=WP_000242979.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 135064 136020 . + . ID=gene-AD39_RS13680;Name=AD39_RS13680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13680;old_locus_tag=AD39_2112 NZ_JJLH01000028.1 Protein Homology CDS 135064 136020 . + 0 ID=cds-WP_000490379.1;Parent=gene-AD39_RS13680;Dbxref=GenBank:WP_000490379.1;Name=WP_000490379.1;Ontology_term=GO:0009245,GO:0016410;gbkey=CDS;go_function=N-acyltransferase activity|0016410||IEA;go_process=lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000490374.1;locus_tag=AD39_RS13680;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_000490379.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 136117 136605 . + . ID=gene-AD39_RS0124355;Name=AD39_RS0124355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124355 NZ_JJLH01000028.1 Protein Homology CDS 136117 136605 . + 0 ID=cds-WP_001326061.1;Parent=gene-AD39_RS0124355;Dbxref=GenBank:WP_001326061.1;Name=WP_001326061.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001461083.1;locus_tag=AD39_RS0124355;product=hypothetical protein;protein_id=WP_001326061.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 136688 137815 . + . ID=gene-AD39_RS13675;Name=AD39_RS13675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13675;old_locus_tag=AD39_2114 NZ_JJLH01000028.1 Protein Homology CDS 136688 137815 . + 0 ID=cds-WP_000741723.1;Parent=gene-AD39_RS13675;Dbxref=GenBank:WP_000741723.1;Name=WP_000741723.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000741720.1;locus_tag=AD39_RS13675;product=ABC transporter ATP-binding protein;protein_id=WP_000741723.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 138222 139031 . + . ID=gene-AD39_RS13670;Name=AD39_RS13670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13670;old_locus_tag=AD39_2116 NZ_JJLH01000028.1 Protein Homology CDS 138222 139031 . + 0 ID=cds-WP_032283280.1;Parent=gene-AD39_RS13670;Dbxref=GenBank:WP_032283280.1;Name=WP_032283280.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700,GO:0140110;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000581608.1;locus_tag=AD39_RS13670;product=TrmB family transcriptional regulator;protein_id=WP_032283280.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 139120 140988 . + . ID=gene-AD39_RS13665;Name=AD39_RS13665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13665;old_locus_tag=AD39_2117 NZ_JJLH01000028.1 Protein Homology CDS 139120 140988 . + 0 ID=cds-WP_000575892.1;Parent=gene-AD39_RS13665;Dbxref=GenBank:WP_000575892.1;Name=WP_000575892.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001548650.1;locus_tag=AD39_RS13665;product=beta-L-arabinofuranosidase domain-containing protein;protein_id=WP_000575892.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 141025 144099 . + . ID=gene-AD39_RS13660;Name=AD39_RS13660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13660;old_locus_tag=AD39_2118 NZ_JJLH01000028.1 Protein Homology CDS 141025 144099 . + 0 ID=cds-WP_000281531.1;Parent=gene-AD39_RS13660;Dbxref=GenBank:WP_000281531.1;Name=WP_000281531.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000281525.1;locus_tag=AD39_RS13660;product=alpha-mannosidase;protein_id=WP_000281531.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 144188 145159 . - . ID=gene-AD39_RS13655;Name=lpxM;gbkey=Gene;gene=lpxM;gene_biotype=protein_coding;gene_synonym=msbB;locus_tag=AD39_RS13655;old_locus_tag=AD39_2119 NZ_JJLH01000028.1 Protein Homology CDS 144188 145159 . - 0 ID=cds-WP_000448381.1;Parent=gene-AD39_RS13655;Dbxref=GenBank:WP_000448381.1;Name=WP_000448381.1;Note=LpxM is lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase%2C an enzyme characterized in Escherichia coli and involved in biosynthesis of the form of lipid A found in that species and some closely related species.;Ontology_term=GO:0009103,GO:0016747,GO:0009276,GO:0016020;gbkey=CDS;gene=lpxM;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA,membrane|0016020||IEA;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416369.1;locus_tag=AD39_RS13655;product=lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase;protein_id=WP_000448381.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 145279 146601 . - . ID=gene-AD39_RS13650;Name=mepM;gbkey=Gene;gene=mepM;gene_biotype=protein_coding;locus_tag=AD39_RS13650;old_locus_tag=AD39_2120 NZ_JJLH01000028.1 Protein Homology CDS 145279 146601 . - 0 ID=cds-WP_001184045.1;Parent=gene-AD39_RS13650;Dbxref=GenBank:WP_001184045.1;Name=WP_001184045.1;Ontology_term=GO:0042834;gbkey=CDS;gene=mepM;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707716.1;locus_tag=AD39_RS13650;product=murein DD-endopeptidase MepM;protein_id=WP_001184045.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 146617 147549 . - . ID=gene-AD39_RS13645;Name=znuA;gbkey=Gene;gene=znuA;gene_biotype=protein_coding;locus_tag=AD39_RS13645;old_locus_tag=AD39_2121 NZ_JJLH01000028.1 Protein Homology CDS 146617 147549 . - 0 ID=cds-WP_001342995.1;Parent=gene-AD39_RS13645;Dbxref=GenBank:WP_001342995.1;Name=WP_001342995.1;Ontology_term=GO:0006829,GO:0046872;gbkey=CDS;gene=znuA;go_function=metal ion binding|0046872||IEA;go_process=zinc ion transport|0006829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416371.4;locus_tag=AD39_RS13645;product=zinc ABC transporter substrate-binding protein ZnuA;protein_id=WP_001342995.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 147628 148383 . + . ID=gene-AD39_RS13640;Name=znuC;gbkey=Gene;gene=znuC;gene_biotype=protein_coding;locus_tag=AD39_RS13640;old_locus_tag=AD39_2122 NZ_JJLH01000028.1 Protein Homology CDS 147628 148383 . + 0 ID=cds-WP_000202996.1;Parent=gene-AD39_RS13640;Dbxref=GenBank:WP_000202996.1;Name=WP_000202996.1;Ontology_term=GO:0006829,GO:0005524,GO:0015633;gbkey=CDS;gene=znuC;go_function=ATP binding|0005524||IEA,ABC-type zinc transporter activity|0015633||IEA;go_process=zinc ion transport|0006829||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310595.1;locus_tag=AD39_RS13640;product=zinc ABC transporter ATP-binding protein ZnuC;protein_id=WP_000202996.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 148380 149165 . + . ID=gene-AD39_RS13635;Name=znuB;gbkey=Gene;gene=znuB;gene_biotype=protein_coding;locus_tag=AD39_RS13635;old_locus_tag=AD39_2123 NZ_JJLH01000028.1 Protein Homology CDS 148380 149165 . + 0 ID=cds-WP_000571465.1;Parent=gene-AD39_RS13635;Dbxref=GenBank:WP_000571465.1;Name=WP_000571465.1;Ontology_term=GO:0055085,GO:0042626;gbkey=CDS;gene=znuB;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416373.1;locus_tag=AD39_RS13635;product=zinc ABC transporter permease subunit ZnuB;protein_id=WP_000571465.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 149312 150322 . - . ID=gene-AD39_RS13630;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=AD39_RS13630;old_locus_tag=AD39_2124 NZ_JJLH01000028.1 Protein Homology CDS 149312 150322 . - 0 ID=cds-WP_000568519.1;Parent=gene-AD39_RS13630;Dbxref=GenBank:WP_000568519.1;Name=WP_000568519.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677,GO:0005524,GO:0009378;gbkey=CDS;gene=ruvB;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310597.1;locus_tag=AD39_RS13630;product=Holliday junction branch migration DNA helicase RuvB;protein_id=WP_000568519.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 150331 150942 . - . ID=gene-AD39_RS13625;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=AD39_RS13625;old_locus_tag=AD39_2125 NZ_JJLH01000028.1 Protein Homology CDS 150331 150942 . - 0 ID=cds-WP_000580323.1;Parent=gene-AD39_RS13625;Dbxref=GenBank:WP_000580323.1;Name=WP_000580323.1;Ontology_term=GO:0006281,GO:0006310,GO:0003678,GO:0009378,GO:0009379;gbkey=CDS;gene=ruvA;go_component=Holliday junction helicase complex|0009379||IEA;go_function=DNA helicase activity|0003678||IEA,four-way junction helicase activity|0009378||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012131997.1;locus_tag=AD39_RS13625;product=Holliday junction branch migration protein RuvA;protein_id=WP_000580323.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 151081 151146 . - . ID=gene-AD39_RS28450;Name=yobI;gbkey=Gene;gene=yobI;gene_biotype=protein_coding;locus_tag=AD39_RS28450 NZ_JJLH01000028.1 Protein Homology CDS 151081 151146 . - 0 ID=cds-WP_001386853.1;Parent=gene-AD39_RS28450;Dbxref=GenBank:WP_001386853.1;Name=WP_001386853.1;gbkey=CDS;gene=yobI;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791244.1;locus_tag=AD39_RS28450;product=stress response small protein YobI;protein_id=WP_001386853.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 151217 151819 . + . ID=gene-AD39_RS13620;Name=yebB;gbkey=Gene;gene=yebB;gene_biotype=protein_coding;locus_tag=AD39_RS13620;old_locus_tag=AD39_2126 NZ_JJLH01000028.1 Protein Homology CDS 151217 151819 . + 0 ID=cds-WP_001024910.1;Parent=gene-AD39_RS13620;Dbxref=GenBank:WP_001024910.1;Name=WP_001024910.1;gbkey=CDS;gene=yebB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416376.2;locus_tag=AD39_RS13620;product=YebB family permuted papain-like enzyme;protein_id=WP_001024910.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 151821 152342 . - . ID=gene-AD39_RS13615;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=AD39_RS13615;old_locus_tag=AD39_2127 NZ_JJLH01000028.1 Protein Homology CDS 151821 152342 . - 0 ID=cds-WP_001295503.1;Parent=gene-AD39_RS13615;Dbxref=GenBank:WP_001295503.1;Name=WP_001295503.1;Ontology_term=GO:0006310,GO:0008821;gbkey=CDS;gene=ruvC;go_function=crossover junction DNA endonuclease activity|0008821||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005068993.1;locus_tag=AD39_RS13615;product=crossover junction endodeoxyribonuclease RuvC;protein_id=WP_001295503.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 152377 153117 . - . ID=gene-AD39_RS13610;Name=yebC;gbkey=Gene;gene=yebC;gene_biotype=protein_coding;locus_tag=AD39_RS13610;old_locus_tag=AD39_2128 NZ_JJLH01000028.1 Protein Homology CDS 152377 153117 . - 0 ID=cds-WP_000907234.1;Parent=gene-AD39_RS13610;Dbxref=GenBank:WP_000907234.1;Name=WP_000907234.1;gbkey=CDS;gene=yebC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000907250.1;locus_tag=AD39_RS13610;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=WP_000907234.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 153146 153598 . - . ID=gene-AD39_RS13605;Name=nudB;gbkey=Gene;gene=nudB;gene_biotype=protein_coding;locus_tag=AD39_RS13605;old_locus_tag=AD39_2129 NZ_JJLH01000028.1 Protein Homology CDS 153146 153598 . - 0 ID=cds-WP_001300367.1;Parent=gene-AD39_RS13605;Dbxref=GenBank:WP_001300367.1;Name=WP_001300367.1;Ontology_term=GO:0046656,GO:0008828,GO:0019177;gbkey=CDS;gene=nudB;go_function=dATP diphosphatase activity|0008828||IEA,dihydroneopterin triphosphate pyrophosphohydrolase activity|0019177||IEA;go_process=folic acid biosynthetic process|0046656||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416379.1;locus_tag=AD39_RS13605;product=dihydroneopterin triphosphate diphosphatase;protein_id=WP_001300367.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 153716 155488 . - . ID=gene-AD39_RS13600;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=protein_coding;locus_tag=AD39_RS13600;old_locus_tag=AD39_2130 NZ_JJLH01000028.1 Protein Homology CDS 153716 155488 . - 0 ID=cds-WP_001258662.1;Parent=gene-AD39_RS13600;Dbxref=GenBank:WP_001258662.1;Name=WP_001258662.1;Ontology_term=GO:0006422,GO:0004815,GO:0005524,GO:0005737;gbkey=CDS;gene=aspS;go_component=cytoplasm|0005737||IEA;go_function=aspartate-tRNA ligase activity|0004815||IEA,ATP binding|0005524||IEA;go_process=aspartyl-tRNA aminoacylation|0006422||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416380.1;locus_tag=AD39_RS13600;product=aspartate--tRNA ligase;protein_id=WP_001258662.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 155798 156364 . + . ID=gene-AD39_RS13595;Name=yecD;gbkey=Gene;gene=yecD;gene_biotype=protein_coding;locus_tag=AD39_RS13595;old_locus_tag=AD39_2131 NZ_JJLH01000028.1 Protein Homology CDS 155798 156364 . + 0 ID=cds-WP_000891610.1;Parent=gene-AD39_RS13595;Dbxref=GenBank:WP_000891610.1;Name=WP_000891610.1;gbkey=CDS;gene=yecD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416381.2;locus_tag=AD39_RS13595;product=hydrolase;protein_id=WP_000891610.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 156361 157179 . + . ID=gene-AD39_RS13590;Name=yecE;gbkey=Gene;gene=yecE;gene_biotype=protein_coding;locus_tag=AD39_RS13590;old_locus_tag=AD39_2132 NZ_JJLH01000028.1 Protein Homology CDS 156361 157179 . + 0 ID=cds-WP_032186967.1;Parent=gene-AD39_RS13590;Dbxref=GenBank:WP_032186967.1;Name=WP_032186967.1;gbkey=CDS;gene=yecE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416382.1;locus_tag=AD39_RS13590;product=DUF72 domain-containing protein;protein_id=WP_032186967.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 157232 157627 . + . ID=gene-AD39_RS13585;Name=yecN;gbkey=Gene;gene=yecN;gene_biotype=protein_coding;locus_tag=AD39_RS13585;old_locus_tag=AD39_2133 NZ_JJLH01000028.1 Protein Homology CDS 157232 157627 . + 0 ID=cds-WP_000252980.1;Parent=gene-AD39_RS13585;Dbxref=GenBank:WP_000252980.1;Name=WP_000252980.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yecN;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310606.2;locus_tag=AD39_RS13585;product=MAPEG family protein;protein_id=WP_000252980.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 157668 158411 . + . ID=gene-AD39_RS13580;Name=cmoA;gbkey=Gene;gene=cmoA;gene_biotype=protein_coding;locus_tag=AD39_RS13580;old_locus_tag=AD39_2134 NZ_JJLH01000028.1 Protein Homology CDS 157668 158411 . + 0 ID=cds-WP_000019588.1;Parent=gene-AD39_RS13580;Dbxref=GenBank:WP_000019588.1;Name=WP_000019588.1;gbkey=CDS;gene=cmoA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310607.1;locus_tag=AD39_RS13580;product=carboxy-S-adenosyl-L-methionine synthase CmoA;protein_id=WP_000019588.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 158408 159379 . + . ID=gene-AD39_RS13575;Name=cmoB;gbkey=Gene;gene=cmoB;gene_biotype=protein_coding;locus_tag=AD39_RS13575;old_locus_tag=AD39_2135 NZ_JJLH01000028.1 Protein Homology CDS 158408 159379 . + 0 ID=cds-WP_000564745.1;Parent=gene-AD39_RS13575;Dbxref=GenBank:WP_000564745.1;Name=WP_000564745.1;Ontology_term=GO:0002098,GO:0016765;gbkey=CDS;gene=cmoB;go_function=transferase activity%2C transferring alkyl or aryl (other than methyl) groups|0016765||IEA;go_process=tRNA wobble uridine modification|0002098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707759.1;locus_tag=AD39_RS13575;product=tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB;protein_id=WP_000564745.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 159544 161973 . - . ID=gene-AD39_RS13570;Name=torZ;gbkey=Gene;gene=torZ;gene_biotype=protein_coding;locus_tag=AD39_RS13570;old_locus_tag=AD39_2136 NZ_JJLH01000028.1 Protein Homology CDS 159544 161973 . - 0 ID=cds-WP_000176829.1;Parent=gene-AD39_RS13570;Dbxref=GenBank:WP_000176829.1;Name=WP_000176829.1;gbkey=CDS;gene=torZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310609.2;locus_tag=AD39_RS13570;product=trimethylamine N-oxide reductase TorZ;protein_id=WP_000176829.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 161998 163098 . - . ID=gene-AD39_RS13565;Name=torY;gbkey=Gene;gene=torY;gene_biotype=protein_coding;locus_tag=AD39_RS13565;old_locus_tag=AD39_2137 NZ_JJLH01000028.1 Protein Homology CDS 161998 163098 . - 0 ID=cds-WP_001214312.1;Parent=gene-AD39_RS13565;Dbxref=GenBank:WP_001214312.1;Name=WP_001214312.1;gbkey=CDS;gene=torY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707761.2;locus_tag=AD39_RS13565;product=NapC/NirT family cytochrome c;protein_id=WP_001214312.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 163486 164232 . - . ID=gene-AD39_RS13560;Name=cutC;gbkey=Gene;gene=cutC;gene_biotype=protein_coding;locus_tag=AD39_RS13560;old_locus_tag=AD39_2138 NZ_JJLH01000028.1 Protein Homology CDS 163486 164232 . - 0 ID=cds-WP_032218211.1;Parent=gene-AD39_RS13560;Dbxref=GenBank:WP_032218211.1;Name=WP_032218211.1;Ontology_term=GO:0055070,GO:0005507;gbkey=CDS;gene=cutC;go_function=copper ion binding|0005507||IEA;go_process=copper ion homeostasis|0055070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_025309.2;locus_tag=AD39_RS13560;product=copper homeostasis protein CutC;protein_id=WP_032218211.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 164246 164812 . - . ID=gene-AD39_RS13555;Name=yecM;gbkey=Gene;gene=yecM;gene_biotype=protein_coding;locus_tag=AD39_RS13555;old_locus_tag=AD39_2139 NZ_JJLH01000028.1 Protein Homology CDS 164246 164812 . - 0 ID=cds-WP_001300190.1;Parent=gene-AD39_RS13555;Dbxref=GenBank:WP_001300190.1;Name=WP_001300190.1;gbkey=CDS;gene=yecM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310612.2;locus_tag=AD39_RS13555;product=VOC family protein;protein_id=WP_001300190.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 165028 166761 . + . ID=gene-AD39_RS13550;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=AD39_RS13550;old_locus_tag=AD39_2140 NZ_JJLH01000028.1 Protein Homology CDS 165028 166761 . + 0 ID=cds-WP_001025342.1;Parent=gene-AD39_RS13550;Dbxref=GenBank:WP_001025342.1;Name=WP_001025342.1;Ontology_term=GO:0006420,GO:0004814,GO:0005524,GO:0005737;gbkey=CDS;gene=argS;go_component=cytoplasm|0005737||IEA;go_function=arginine-tRNA ligase activity|0004814||IEA,ATP binding|0005524||IEA;go_process=arginyl-tRNA aminoacylation|0006420||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001025321.1;locus_tag=AD39_RS13550;product=arginine--tRNA ligase;protein_id=WP_001025342.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 166803 166847 . - . ID=gene-AD39_RS29715;Name=yecV;gbkey=Gene;gene=yecV;gene_biotype=protein_coding;locus_tag=AD39_RS29715 NZ_JJLH01000028.1 Protein Homology CDS 166803 166847 . - 0 ID=cds-WP_211180499.1;Parent=gene-AD39_RS29715;Dbxref=GenBank:WP_211180499.1;Name=WP_211180499.1;gbkey=CDS;gene=yecV;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051188.1;locus_tag=AD39_RS29715;product=protein YecV;protein_id=WP_211180499.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 166938 167426 . + . ID=gene-AD39_RS13545;Name=yecT;gbkey=Gene;gene=yecT;gene_biotype=protein_coding;locus_tag=AD39_RS13545;old_locus_tag=AD39_2141 NZ_JJLH01000028.1 Protein Homology CDS 166938 167426 . + 0 ID=cds-WP_001315683.1;Parent=gene-AD39_RS13545;Dbxref=GenBank:WP_001315683.1;Name=WP_001315683.1;gbkey=CDS;gene=yecT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416391.4;locus_tag=AD39_RS13545;product=lysozyme inhibitor LprI family protein;protein_id=WP_001315683.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 167546 167938 . - . ID=gene-AD39_RS13540;Name=flhE;gbkey=Gene;gene=flhE;gene_biotype=protein_coding;locus_tag=AD39_RS13540;old_locus_tag=AD39_2142 NZ_JJLH01000028.1 Protein Homology CDS 167546 167938 . - 0 ID=cds-WP_001259583.1;Parent=gene-AD39_RS13540;Dbxref=GenBank:WP_001259583.1;Name=WP_001259583.1;Ontology_term=GO:0044781;gbkey=CDS;gene=flhE;go_process=bacterial-type flagellum organization|0044781||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416392.1;locus_tag=AD39_RS13540;product=flagellar protein FlhE;protein_id=WP_001259583.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 167938 170016 . - . ID=gene-AD39_RS13535;Name=flhA;gbkey=Gene;gene=flhA;gene_biotype=protein_coding;locus_tag=AD39_RS13535;old_locus_tag=AD39_2143 NZ_JJLH01000028.1 Protein Homology CDS 167938 170016 . - 0 ID=cds-WP_000066983.1;Parent=gene-AD39_RS13535;Dbxref=GenBank:WP_000066983.1;Name=WP_000066983.1;Ontology_term=GO:0044780,GO:0016020;gbkey=CDS;gene=flhA;go_component=membrane|0016020||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416393.1;locus_tag=AD39_RS13535;product=flagellar biosynthesis protein FlhA;protein_id=WP_000066983.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 170009 171157 . - . ID=gene-AD39_RS13530;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=AD39_RS13530;old_locus_tag=AD39_2144 NZ_JJLH01000028.1 Protein Homology CDS 170009 171157 . - 0 ID=cds-WP_001278954.1;Parent=gene-AD39_RS13530;Dbxref=GenBank:WP_001278954.1;Name=WP_001278954.1;Ontology_term=GO:0015031,GO:0044780,GO:0016020;gbkey=CDS;gene=flhB;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416394.1;locus_tag=AD39_RS13530;product=flagellar biosynthesis protein FlhB;protein_id=WP_001278954.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 171359 172003 . - . ID=gene-AD39_RS13525;Name=cheZ;gbkey=Gene;gene=cheZ;gene_biotype=protein_coding;locus_tag=AD39_RS13525;old_locus_tag=AD39_2146 NZ_JJLH01000028.1 Protein Homology CDS 171359 172003 . - 0 ID=cds-WP_000983609.1;Parent=gene-AD39_RS13525;Dbxref=GenBank:WP_000983609.1;Name=WP_000983609.1;Ontology_term=GO:0050920,GO:0003824;gbkey=CDS;gene=cheZ;go_function=catalytic activity|0003824||IEA;go_process=regulation of chemotaxis|0050920||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416395.1;locus_tag=AD39_RS13525;product=protein phosphatase CheZ;protein_id=WP_000983609.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 172014 172403 . - . ID=gene-AD39_RS13520;Name=cheY;gbkey=Gene;gene=cheY;gene_biotype=protein_coding;locus_tag=AD39_RS13520;old_locus_tag=AD39_2147 NZ_JJLH01000028.1 Protein Homology CDS 172014 172403 . - 0 ID=cds-WP_000763867.1;Parent=gene-AD39_RS13520;Dbxref=GenBank:WP_000763867.1;Name=WP_000763867.1;Ontology_term=GO:0000160;gbkey=CDS;gene=cheY;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002210873.1;locus_tag=AD39_RS13520;product=chemotaxis response regulator CheY;protein_id=WP_000763867.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 172418 173467 . - . ID=gene-AD39_RS13515;Name=cheB;gbkey=Gene;gene=cheB;gene_biotype=protein_coding;locus_tag=AD39_RS13515;old_locus_tag=AD39_2148 NZ_JJLH01000028.1 Protein Homology CDS 172418 173467 . - 0 ID=cds-WP_000036378.1;Parent=gene-AD39_RS13515;Dbxref=GenBank:WP_000036378.1;Name=WP_000036378.1;gbkey=CDS;gene=cheB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000036372.1;locus_tag=AD39_RS13515;product=protein-glutamate methylesterase/protein glutamine deamidase;protein_id=WP_000036378.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 173470 174330 . - . ID=gene-AD39_RS13510;Name=cheR;gbkey=Gene;gene=cheR;gene_biotype=protein_coding;locus_tag=AD39_RS13510;old_locus_tag=AD39_2149 NZ_JJLH01000028.1 Protein Homology CDS 173470 174330 . - 0 ID=cds-WP_000204339.1;Parent=gene-AD39_RS13510;Dbxref=GenBank:WP_000204339.1;Name=WP_000204339.1;Ontology_term=GO:0008757;gbkey=CDS;gene=cheR;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416398.1;locus_tag=AD39_RS13510;product=protein-glutamate O-methyltransferase CheR;protein_id=WP_000204339.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 174349 175950 . - . ID=gene-AD39_RS13505;Name=tap;gbkey=Gene;gene=tap;gene_biotype=protein_coding;locus_tag=AD39_RS13505;old_locus_tag=AD39_2150 NZ_JJLH01000028.1 Protein Homology CDS 174349 175950 . - 0 ID=cds-WP_032287562.1;Parent=gene-AD39_RS13505;Dbxref=GenBank:WP_032287562.1;Name=WP_032287562.1;gbkey=CDS;gene=tap;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416399.1;locus_tag=AD39_RS13505;product=methyl-accepting chemotaxis protein IV;protein_id=WP_032287562.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 175996 177657 . - . ID=gene-AD39_RS13500;Name=tar;gbkey=Gene;gene=tar;gene_biotype=protein_coding;locus_tag=AD39_RS13500;old_locus_tag=AD39_2151 NZ_JJLH01000028.1 Protein Homology CDS 175996 177657 . - 0 ID=cds-WP_001569984.1;Parent=gene-AD39_RS13500;Dbxref=GenBank:WP_001569984.1;Name=WP_001569984.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0016020;gbkey=CDS;gene=tar;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416400.1;locus_tag=AD39_RS13500;product=methyl-accepting chemotaxis protein II;protein_id=WP_001569984.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 177802 178305 . - . ID=gene-AD39_RS13495;Name=cheW;gbkey=Gene;gene=cheW;gene_biotype=protein_coding;locus_tag=AD39_RS13495;old_locus_tag=AD39_2152 NZ_JJLH01000028.1 Protein Homology CDS 177802 178305 . - 0 ID=cds-WP_000147302.1;Parent=gene-AD39_RS13495;Dbxref=GenBank:WP_000147302.1;Name=WP_000147302.1;gbkey=CDS;gene=cheW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310624.1;locus_tag=AD39_RS13495;product=chemotaxis protein CheW;protein_id=WP_000147302.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 178326 180290 . - . ID=gene-AD39_RS13490;Name=cheA;gbkey=Gene;gene=cheA;gene_biotype=protein_coding;locus_tag=AD39_RS13490;old_locus_tag=AD39_2153 NZ_JJLH01000028.1 Protein Homology CDS 178326 180290 . - 0 ID=cds-WP_072832939.1;Parent=gene-AD39_RS13490;Dbxref=GenBank:WP_072832939.1;Name=WP_072832939.1;Ontology_term=GO:0000160,GO:0006935,GO:0016310,GO:0000155;gbkey=CDS;gene=cheA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,chemotaxis|0006935||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310625.1;locus_tag=AD39_RS13490;product=chemotaxis protein CheA;protein_id=WP_072832939.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 180295 181221 . - . ID=gene-AD39_RS13485;Name=motB;gbkey=Gene;gene=motB;gene_biotype=protein_coding;locus_tag=AD39_RS13485;old_locus_tag=AD39_2154 NZ_JJLH01000028.1 Protein Homology CDS 180295 181221 . - 0 ID=cds-WP_000795630.1;Parent=gene-AD39_RS13485;Dbxref=GenBank:WP_000795630.1;Name=WP_000795630.1;gbkey=CDS;gene=motB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310626.1;locus_tag=AD39_RS13485;product=flagellar motor protein MotB;protein_id=WP_000795630.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 181218 182105 . - . ID=gene-AD39_RS13480;Name=motA;gbkey=Gene;gene=motA;gene_biotype=protein_coding;locus_tag=AD39_RS13480;old_locus_tag=AD39_2155 NZ_JJLH01000028.1 Protein Homology CDS 181218 182105 . - 0 ID=cds-WP_000906336.1;Parent=gene-AD39_RS13480;Dbxref=GenBank:WP_000906336.1;Name=WP_000906336.1;gbkey=CDS;gene=motA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310627.1;locus_tag=AD39_RS13480;product=flagellar motor stator protein MotA;protein_id=WP_000906336.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 182232 182810 . - . ID=gene-AD39_RS13475;Name=flhC;gbkey=Gene;gene=flhC;gene_biotype=protein_coding;locus_tag=AD39_RS13475;old_locus_tag=AD39_2156 NZ_JJLH01000028.1 Protein Homology CDS 182232 182810 . - 0 ID=cds-WP_001291603.1;Parent=gene-AD39_RS13475;Dbxref=GenBank:WP_001291603.1;Name=WP_001291603.1;Ontology_term=GO:0045893,GO:1902208,GO:0003677;gbkey=CDS;gene=flhC;go_function=DNA binding|0003677||IEA;go_process=positive regulation of DNA-templated transcription|0045893||IEA,regulation of bacterial-type flagellum assembly|1902208||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310628.1;locus_tag=AD39_RS13475;product=flagellar transcriptional regulator FlhC;protein_id=WP_001291603.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 182813 183163 . - . ID=gene-AD39_RS0124360;Name=flhD;gbkey=Gene;gene=flhD;gene_biotype=protein_coding;locus_tag=AD39_RS0124360;old_locus_tag=AD39_2157 NZ_JJLH01000028.1 Protein Homology CDS 182813 183163 . - 0 ID=cds-WP_001295647.1;Parent=gene-AD39_RS0124360;Dbxref=GenBank:WP_001295647.1;Name=WP_001295647.1;Ontology_term=GO:0045893,GO:1902208,GO:0003677;gbkey=CDS;gene=flhD;go_function=DNA binding|0003677||IEA;go_process=positive regulation of DNA-templated transcription|0045893||IEA,regulation of bacterial-type flagellum assembly|1902208||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416406.4;locus_tag=AD39_RS0124360;product=flagellar transcriptional regulator FlhD;protein_id=WP_001295647.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 183943 184371 . + . ID=gene-AD39_RS13470;Name=uspC;gbkey=Gene;gene=uspC;gene_biotype=protein_coding;locus_tag=AD39_RS13470;old_locus_tag=AD39_2158 NZ_JJLH01000028.1 Protein Homology CDS 183943 184371 . + 0 ID=cds-WP_000122426.1;Parent=gene-AD39_RS13470;Dbxref=GenBank:WP_000122426.1;Name=WP_000122426.1;gbkey=CDS;gene=uspC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416409.1;locus_tag=AD39_RS13470;product=universal stress protein UspC;protein_id=WP_000122426.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 184378 185802 . - . ID=gene-AD39_RS13465;Name=otsA;gbkey=Gene;gene=otsA;gene_biotype=protein_coding;locus_tag=AD39_RS13465;old_locus_tag=AD39_2159 NZ_JJLH01000028.1 Protein Homology CDS 184378 185802 . - 0 ID=cds-WP_001295646.1;Parent=gene-AD39_RS13465;Dbxref=GenBank:WP_001295646.1;Name=WP_001295646.1;Ontology_term=GO:0005992,GO:0003825;gbkey=CDS;gene=otsA;go_function=alpha%2Calpha-trehalose-phosphate synthase (UDP-forming) activity|0003825||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416410.1;locus_tag=AD39_RS13465;product=alpha%2Calpha-trehalose-phosphate synthase;protein_id=WP_001295646.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 185777 186577 . - . ID=gene-AD39_RS13460;Name=otsB;gbkey=Gene;gene=otsB;gene_biotype=protein_coding;locus_tag=AD39_RS13460;old_locus_tag=AD39_2160 NZ_JJLH01000028.1 Protein Homology CDS 185777 186577 . - 0 ID=cds-WP_001307855.1;Parent=gene-AD39_RS13460;Dbxref=GenBank:WP_001307855.1;Name=WP_001307855.1;Ontology_term=GO:0005992,GO:0004805;gbkey=CDS;gene=otsB;go_function=trehalose-phosphatase activity|0004805||IEA;go_process=trehalose biosynthetic process|0005992||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310632.1;locus_tag=AD39_RS13460;product=trehalose-phosphatase;protein_id=WP_001307855.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 186744 187730 . - . ID=gene-AD39_RS13455;Name=araH;gbkey=Gene;gene=araH;gene_biotype=protein_coding;locus_tag=AD39_RS13455;old_locus_tag=AD39_2161 NZ_JJLH01000028.1 Protein Homology CDS 186744 187730 . - 0 ID=cds-WP_000100203.1;Parent=gene-AD39_RS13455;Dbxref=GenBank:WP_000100203.1;Name=WP_000100203.1;gbkey=CDS;gene=araH;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026162.2;locus_tag=AD39_RS13455;product=arabinose ABC transporter permease AraH;protein_id=WP_000100203.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 187745 189259 . - . ID=gene-AD39_RS13450;Name=araG;gbkey=Gene;gene=araG;gene_biotype=protein_coding;locus_tag=AD39_RS13450;old_locus_tag=AD39_2162 NZ_JJLH01000028.1 Protein Homology CDS 187745 189259 . - 0 ID=cds-WP_001187810.1;Parent=gene-AD39_RS13450;Dbxref=GenBank:WP_001187810.1;Name=WP_001187810.1;gbkey=CDS;gene=araG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005127704.1;locus_tag=AD39_RS13450;product=arabinose ABC transporter ATP-binding protein AraG;protein_id=WP_001187810.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 189329 190318 . - . ID=gene-AD39_RS13445;Name=araF;gbkey=Gene;gene=araF;gene_biotype=protein_coding;locus_tag=AD39_RS13445;old_locus_tag=AD39_2163 NZ_JJLH01000028.1 Protein Homology CDS 189329 190318 . - 0 ID=cds-WP_000548675.1;Parent=gene-AD39_RS13445;Dbxref=GenBank:WP_000548675.1;Name=WP_000548675.1;gbkey=CDS;gene=araF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416414.1;locus_tag=AD39_RS13445;product=arabinose ABC transporter substrate-binding protein AraF;protein_id=WP_000548675.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 191115 191618 . + . ID=gene-AD39_RS13440;Name=ftnB;gbkey=Gene;gene=ftnB;gene_biotype=protein_coding;locus_tag=AD39_RS13440;old_locus_tag=AD39_2164 NZ_JJLH01000028.1 Protein Homology CDS 191115 191618 . + 0 ID=cds-WP_000179469.1;Parent=gene-AD39_RS13440;Dbxref=GenBank:WP_000179469.1;Name=WP_000179469.1;gbkey=CDS;gene=ftnB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310637.1;locus_tag=AD39_RS13440;product=non-heme ferritin-like protein;protein_id=WP_000179469.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 191697 191948 . - . ID=gene-AD39_RS13435;Name=yecJ;gbkey=Gene;gene=yecJ;gene_biotype=protein_coding;locus_tag=AD39_RS13435;old_locus_tag=AD39_2165 NZ_JJLH01000028.1 Protein Homology CDS 191697 191948 . - 0 ID=cds-WP_000082127.1;Parent=gene-AD39_RS13435;Dbxref=GenBank:WP_000082127.1;Name=WP_000082127.1;gbkey=CDS;gene=yecJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416416.2;locus_tag=AD39_RS13435;product=DUF2766 family protein YecJ;protein_id=WP_000082127.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 192063 192149 . - . ID=gene-AD39_RS28455;Name=azuC;gbkey=Gene;gene=azuC;gene_biotype=protein_coding;locus_tag=AD39_RS28455 NZ_JJLH01000028.1 Protein Homology CDS 192063 192149 . - 0 ID=cds-WP_010723106.1;Parent=gene-AD39_RS28455;Dbxref=GenBank:WP_010723106.1;Name=WP_010723106.1;gbkey=CDS;gene=azuC;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791245.1;locus_tag=AD39_RS28455;product=stress response protein AzuC;protein_id=WP_010723106.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 192411 192734 . + . ID=gene-AD39_RS0124365;Name=yecR;gbkey=Gene;gene=yecR;gene_biotype=protein_coding;locus_tag=AD39_RS0124365 NZ_JJLH01000028.1 Protein Homology CDS 192411 192734 . + 0 ID=cds-WP_001237869.1;Parent=gene-AD39_RS0124365;Dbxref=GenBank:WP_001237869.1;Name=WP_001237869.1;gbkey=CDS;gene=yecR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416417.1;locus_tag=AD39_RS0124365;product=YecR-like lipofamily protein;protein_id=WP_001237869.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 192905 193402 . + . ID=gene-AD39_RS13425;Name=ftnA;gbkey=Gene;gene=ftnA;gene_biotype=protein_coding;locus_tag=AD39_RS13425;old_locus_tag=AD39_2170 NZ_JJLH01000028.1 Protein Homology CDS 192905 193402 . + 0 ID=cds-WP_000917208.1;Parent=gene-AD39_RS13425;Dbxref=GenBank:WP_000917208.1;Name=WP_000917208.1;Ontology_term=GO:0006879,GO:0008199;gbkey=CDS;gene=ftnA;go_function=ferric iron binding|0008199||IEA;go_process=intracellular iron ion homeostasis|0006879||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310640.1;locus_tag=AD39_RS13425;product=non-heme ferritin;protein_id=WP_000917208.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 193440 193679 . - . ID=gene-AD39_RS13420;Name=yecH;gbkey=Gene;gene=yecH;gene_biotype=protein_coding;locus_tag=AD39_RS13420;old_locus_tag=AD39_2171 NZ_JJLH01000028.1 Protein Homology CDS 193440 193679 . - 0 ID=cds-WP_000377225.1;Parent=gene-AD39_RS13420;Dbxref=GenBank:WP_000377225.1;Name=WP_000377225.1;gbkey=CDS;gene=yecH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416419.1;locus_tag=AD39_RS13420;product=YecH family metal-binding protein;protein_id=WP_000377225.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 193870 195081 . + . ID=gene-AD39_RS13415;Name=tyrP;gbkey=Gene;gene=tyrP;gene_biotype=protein_coding;locus_tag=AD39_RS13415;old_locus_tag=AD39_2173 NZ_JJLH01000028.1 Protein Homology CDS 193870 195081 . + 0 ID=cds-WP_001583604.1;Parent=gene-AD39_RS13415;Dbxref=GenBank:WP_001583604.1;Name=WP_001583604.1;Ontology_term=GO:0015801,GO:0015173,GO:0005886;gbkey=CDS;gene=tyrP;go_component=plasma membrane|0005886||IEA;go_function=aromatic amino acid transmembrane transporter activity|0015173||IEA;go_process=aromatic amino acid transport|0015801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310642.1;locus_tag=AD39_RS13415;product=tyrosine transporter TyrP;protein_id=WP_001583604.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 195143 195808 . - . ID=gene-AD39_RS13410;Name=yecA;gbkey=Gene;gene=yecA;gene_biotype=protein_coding;locus_tag=AD39_RS13410;old_locus_tag=AD39_2174 NZ_JJLH01000028.1 Protein Homology CDS 195143 195808 . - 0 ID=cds-WP_000847902.1;Parent=gene-AD39_RS13410;Dbxref=GenBank:WP_000847902.1;Name=WP_000847902.1;gbkey=CDS;gene=yecA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416421.1;locus_tag=AD39_RS13410;product=UPF0149 family protein YecA;protein_id=WP_000847902.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 196004 196090 . - . ID=gene-AD39_RS13405;Name=AD39_RS13405;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS13405;old_locus_tag=AD39_2175 NZ_JJLH01000028.1 tRNAscan-SE tRNA 196004 196090 . - . ID=rna-AD39_RS13405;Parent=gene-AD39_RS13405;anticodon=(pos:complement(196054..196056));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS13405;product=tRNA-Leu NZ_JJLH01000028.1 tRNAscan-SE exon 196004 196090 . - . ID=exon-AD39_RS13405-1;Parent=rna-AD39_RS13405;anticodon=(pos:complement(196054..196056));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS13405;product=tRNA-Leu NZ_JJLH01000028.1 RefSeq gene 196103 196176 . - . ID=gene-AD39_RS13400;Name=AD39_RS13400;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS13400;old_locus_tag=AD39_2176 NZ_JJLH01000028.1 tRNAscan-SE tRNA 196103 196176 . - . ID=rna-AD39_RS13400;Parent=gene-AD39_RS13400;anticodon=(pos:complement(196142..196144));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS13400;product=tRNA-Cys NZ_JJLH01000028.1 tRNAscan-SE exon 196103 196176 . - . ID=exon-AD39_RS13400-1;Parent=rna-AD39_RS13400;anticodon=(pos:complement(196142..196144));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS13400;product=tRNA-Cys NZ_JJLH01000028.1 RefSeq gene 196230 196305 . - . ID=gene-AD39_RS13395;Name=AD39_RS13395;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS13395;old_locus_tag=AD39_2177 NZ_JJLH01000028.1 tRNAscan-SE tRNA 196230 196305 . - . ID=rna-AD39_RS13395;Parent=gene-AD39_RS13395;anticodon=(pos:complement(196270..196272));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS13395;product=tRNA-Gly NZ_JJLH01000028.1 tRNAscan-SE exon 196230 196305 . - . ID=exon-AD39_RS13395-1;Parent=rna-AD39_RS13395;anticodon=(pos:complement(196270..196272));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS13395;product=tRNA-Gly NZ_JJLH01000028.1 RefSeq gene 196457 197005 . - . ID=gene-AD39_RS13390;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;locus_tag=AD39_RS13390;old_locus_tag=AD39_2178 NZ_JJLH01000028.1 Protein Homology CDS 196457 197005 . - 0 ID=cds-WP_001160188.1;Parent=gene-AD39_RS13390;Dbxref=GenBank:WP_001160188.1;Name=WP_001160188.1;gbkey=CDS;gene=pgsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310677.1;locus_tag=AD39_RS13390;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_001160188.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 197062 198894 . - . ID=gene-AD39_RS13385;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=AD39_RS13385;old_locus_tag=AD39_2179 NZ_JJLH01000028.1 Protein Homology CDS 197062 198894 . - 0 ID=cds-WP_001283421.1;Parent=gene-AD39_RS13385;Dbxref=GenBank:WP_001283421.1;Name=WP_001283421.1;Ontology_term=GO:0006289,GO:0009381,GO:0009380;gbkey=CDS;gene=uvrC;go_component=excinuclease repair complex|0009380||IEA;go_function=excinuclease ABC activity|0009381||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310678.2;locus_tag=AD39_RS13385;product=excinuclease ABC subunit UvrC;protein_id=WP_001283421.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 198891 199547 . - . ID=gene-AD39_RS13380;Name=uvrY;gbkey=Gene;gene=uvrY;gene_biotype=protein_coding;locus_tag=AD39_RS13380;old_locus_tag=AD39_2180 NZ_JJLH01000028.1 Protein Homology CDS 198891 199547 . - 0 ID=cds-WP_000611335.1;Parent=gene-AD39_RS13380;Dbxref=GenBank:WP_000611335.1;Name=WP_000611335.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=uvrY;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416424.1;locus_tag=AD39_RS13380;product=UvrY/SirA/GacA family response regulator transcription factor;protein_id=WP_000611335.1;transl_table=11 NZ_JJLH01000028.1 RefSeq pseudogene 199689 199760 . + . ID=gene-AD39_RS30050;Name=AD39_RS30050;end_range=199760,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30050;partial=true;pseudo=true NZ_JJLH01000028.1 Protein Homology CDS 199689 199760 . + 0 ID=cds-AD39_RS30050;Parent=gene-AD39_RS30050;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=199760,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001302039.1;locus_tag=AD39_RS30050;partial=true;product=transcriptional regulator;pseudo=true;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 199843 200019 . + . ID=gene-AD39_RS29030;Name=yecU;gbkey=Gene;gene=yecU;gene_biotype=protein_coding;locus_tag=AD39_RS29030 NZ_JJLH01000028.1 Protein Homology CDS 199843 200019 . + 0 ID=cds-WP_000590347.1;Parent=gene-AD39_RS29030;Dbxref=GenBank:WP_000590347.1;Name=WP_000590347.1;gbkey=CDS;gene=yecU;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518796.1;locus_tag=AD39_RS29030;product=protein YecU;protein_id=WP_000590347.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 200006 200230 . + . ID=gene-AD39_RS13375;Name=yecF;gbkey=Gene;gene=yecF;gene_biotype=protein_coding;locus_tag=AD39_RS13375;old_locus_tag=AD39_2181 NZ_JJLH01000028.1 Protein Homology CDS 200006 200230 . + 0 ID=cds-WP_000106474.1;Parent=gene-AD39_RS13375;Dbxref=GenBank:WP_000106474.1;Name=WP_000106474.1;gbkey=CDS;gene=yecF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416425.1;locus_tag=AD39_RS13375;product=DUF2594 family protein YecF;protein_id=WP_000106474.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 200297 201019 . - . ID=gene-AD39_RS13370;Name=sdiA;gbkey=Gene;gene=sdiA;gene_biotype=protein_coding;locus_tag=AD39_RS13370;old_locus_tag=AD39_2182 NZ_JJLH01000028.1 Protein Homology CDS 200297 201019 . - 0 ID=cds-WP_001154267.1;Parent=gene-AD39_RS13370;Dbxref=GenBank:WP_001154267.1;Name=WP_001154267.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=sdiA;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310681.1;locus_tag=AD39_RS13370;product=transcriptional regulator SdiA;protein_id=WP_001154267.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 201249 202001 . - . ID=gene-AD39_RS13365;Name=tcyN;gbkey=Gene;gene=tcyN;gene_biotype=protein_coding;locus_tag=AD39_RS13365;old_locus_tag=AD39_2183 NZ_JJLH01000028.1 Protein Homology CDS 201249 202001 . - 0 ID=cds-WP_001495172.1;Parent=gene-AD39_RS13365;Dbxref=GenBank:WP_001495172.1;Name=WP_001495172.1;Ontology_term=GO:0003333,GO:0005524,GO:0015424;gbkey=CDS;gene=tcyN;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416427.1;locus_tag=AD39_RS13365;product=L-cystine ABC transporter ATP-binding protein TcyN;protein_id=WP_001495172.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 201998 202666 . - . ID=gene-AD39_RS13360;Name=tcyL;gbkey=Gene;gene=tcyL;gene_biotype=protein_coding;locus_tag=AD39_RS13360;old_locus_tag=AD39_2184 NZ_JJLH01000028.1 Protein Homology CDS 201998 202666 . - 0 ID=cds-WP_001158220.1;Parent=gene-AD39_RS13360;Dbxref=GenBank:WP_001158220.1;Name=WP_001158220.1;gbkey=CDS;gene=tcyL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416428.1;locus_tag=AD39_RS13360;product=cystine ABC transporter permease;protein_id=WP_001158220.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 202681 203667 . - . ID=gene-AD39_RS13355;Name=dcyD;gbkey=Gene;gene=dcyD;gene_biotype=protein_coding;locus_tag=AD39_RS13355;old_locus_tag=AD39_2185 NZ_JJLH01000028.1 Protein Homology CDS 202681 203667 . - 0 ID=cds-WP_001128215.1;Parent=gene-AD39_RS13355;Dbxref=GenBank:WP_001128215.1;Name=WP_001128215.1;Ontology_term=GO:0019148;gbkey=CDS;gene=dcyD;go_function=D-cysteine desulfhydrase activity|0019148||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416429.4;locus_tag=AD39_RS13355;product=D-cysteine desulfhydrase;protein_id=WP_001128215.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 203772 204572 . - . ID=gene-AD39_RS13350;Name=tcyJ;gbkey=Gene;gene=tcyJ;gene_biotype=protein_coding;locus_tag=AD39_RS13350;old_locus_tag=AD39_2186 NZ_JJLH01000028.1 Protein Homology CDS 203772 204572 . - 0 ID=cds-WP_001296168.1;Parent=gene-AD39_RS13350;Dbxref=GenBank:WP_001296168.1;Name=WP_001296168.1;Ontology_term=GO:0015276,GO:0016020;gbkey=CDS;gene=tcyJ;go_component=membrane|0016020||IEA;go_function=ligand-gated monoatomic ion channel activity|0015276||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416430.1;locus_tag=AD39_RS13350;product=cystine ABC transporter substrate-binding protein;protein_id=WP_001296168.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 204660 205211 . - . ID=gene-AD39_RS13345;Name=fliZ;gbkey=Gene;gene=fliZ;gene_biotype=protein_coding;locus_tag=AD39_RS13345;old_locus_tag=AD39_2187 NZ_JJLH01000028.1 Protein Homology CDS 204660 205211 . - 0 ID=cds-WP_021292822.1;Parent=gene-AD39_RS13345;Dbxref=GenBank:WP_021292822.1;Name=WP_021292822.1;gbkey=CDS;gene=fliZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310687.2;locus_tag=AD39_RS13345;product=flagella biosynthesis regulatory protein FliZ;protein_id=WP_021292822.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 205257 205976 . - . ID=gene-AD39_RS13340;Name=fliA;gbkey=Gene;gene=fliA;gene_biotype=protein_coding;locus_tag=AD39_RS13340;old_locus_tag=AD39_2188 NZ_JJLH01000028.1 Protein Homology CDS 205257 205976 . - 0 ID=cds-WP_001087467.1;Parent=gene-AD39_RS13340;Dbxref=GenBank:WP_001087467.1;Name=WP_001087467.1;gbkey=CDS;gene=fliA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310688.1;locus_tag=AD39_RS13340;product=RNA polymerase sigma factor FliA;protein_id=WP_001087467.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 206296 208062 . - . ID=gene-AD39_RS13335;Name=AD39_RS13335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13335;old_locus_tag=AD39_2190 NZ_JJLH01000028.1 Protein Homology CDS 206296 208062 . - 0 ID=cds-WP_032283287.1;Parent=gene-AD39_RS13335;Dbxref=GenBank:WP_032283287.1;Name=WP_032283287.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000079685.1;locus_tag=AD39_RS13335;product=FliC/FljB family flagellin;protein_id=WP_032283287.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 208328 209734 . + . ID=gene-AD39_RS13330;Name=fliD;gbkey=Gene;gene=fliD;gene_biotype=protein_coding;locus_tag=AD39_RS13330;old_locus_tag=AD39_2191 NZ_JJLH01000028.1 Protein Homology CDS 208328 209734 . + 0 ID=cds-WP_032283289.1;Parent=gene-AD39_RS13330;Dbxref=GenBank:WP_032283289.1;Name=WP_032283289.1;Ontology_term=GO:0007155,GO:0009288,GO:0009421;gbkey=CDS;gene=fliD;go_component=bacterial-type flagellum|0009288||IEA,bacterial-type flagellum filament cap|0009421||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416434.1;locus_tag=AD39_RS13330;product=flagellar filament capping protein FliD;protein_id=WP_032283289.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 209759 210169 . + . ID=gene-AD39_RS13325;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;locus_tag=AD39_RS13325;old_locus_tag=AD39_2192 NZ_JJLH01000028.1 Protein Homology CDS 209759 210169 . + 0 ID=cds-WP_000270663.1;Parent=gene-AD39_RS13325;Dbxref=GenBank:WP_000270663.1;Name=WP_000270663.1;Ontology_term=GO:0044780;gbkey=CDS;gene=fliS;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310691.1;locus_tag=AD39_RS13325;product=flagellar export chaperone FliS;protein_id=WP_000270663.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 210169 210534 . + . ID=gene-AD39_RS13320;Name=fliT;gbkey=Gene;gene=fliT;gene_biotype=protein_coding;locus_tag=AD39_RS13320;old_locus_tag=AD39_2193 NZ_JJLH01000028.1 Protein Homology CDS 210169 210534 . + 0 ID=cds-WP_001015028.1;Parent=gene-AD39_RS13320;Dbxref=GenBank:WP_001015028.1;Name=WP_001015028.1;Ontology_term=GO:0006605,GO:0044780,GO:1902209;gbkey=CDS;gene=fliT;go_process=protein targeting|0006605||IEA,bacterial-type flagellum assembly|0044780||IEA,negative regulation of bacterial-type flagellum assembly|1902209||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001015028.1;locus_tag=AD39_RS13320;product=flagella biosynthesis regulatory protein FliT;protein_id=WP_001015028.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 210612 212099 . + . ID=gene-AD39_RS13315;Name=amyA;gbkey=Gene;gene=amyA;gene_biotype=protein_coding;locus_tag=AD39_RS13315;old_locus_tag=AD39_2194 NZ_JJLH01000028.1 Protein Homology CDS 210612 212099 . + 0 ID=cds-WP_032287563.1;Parent=gene-AD39_RS13315;Dbxref=GenBank:WP_032287563.1;Name=WP_032287563.1;Ontology_term=GO:0005975,GO:0004553,GO:0005509;gbkey=CDS;gene=amyA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA,calcium ion binding|0005509||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416437.1;locus_tag=AD39_RS13315;product=alpha-amylase;protein_id=WP_032287563.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 212133 212546 . - . ID=gene-AD39_RS13310;Name=yedD;gbkey=Gene;gene=yedD;gene_biotype=protein_coding;locus_tag=AD39_RS13310;old_locus_tag=AD39_2195 NZ_JJLH01000028.1 Protein Homology CDS 212133 212546 . - 0 ID=cds-WP_032283290.1;Parent=gene-AD39_RS13310;Dbxref=GenBank:WP_032283290.1;Name=WP_032283290.1;gbkey=CDS;gene=yedD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310694.3;locus_tag=AD39_RS13310;product=lipoprotein YedD;protein_id=WP_032283290.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 212733 213938 . + . ID=gene-AD39_RS13305;Name=yedE;gbkey=Gene;gene=yedE;gene_biotype=protein_coding;locus_tag=AD39_RS13305;old_locus_tag=AD39_2196 NZ_JJLH01000028.1 Protein Homology CDS 212733 213938 . + 0 ID=cds-WP_000118901.1;Parent=gene-AD39_RS13305;Dbxref=GenBank:WP_000118901.1;Name=WP_000118901.1;gbkey=CDS;gene=yedE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416439.1;locus_tag=AD39_RS13305;product=selenium metabolism membrane protein YedE/FdhT;protein_id=WP_000118901.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 213935 214168 . + . ID=gene-AD39_RS13300;Name=yedF;gbkey=Gene;gene=yedF;gene_biotype=protein_coding;locus_tag=AD39_RS13300;old_locus_tag=AD39_2197 NZ_JJLH01000028.1 Protein Homology CDS 213935 214168 . + 0 ID=cds-WP_000790498.1;Parent=gene-AD39_RS13300;Dbxref=GenBank:WP_000790498.1;Name=WP_000790498.1;gbkey=CDS;gene=yedF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310696.1;locus_tag=AD39_RS13300;product=sulfurtransferase-like selenium metabolism protein YedF;protein_id=WP_000790498.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 214275 214943 . + . ID=gene-AD39_RS13295;Name=yedK;gbkey=Gene;gene=yedK;gene_biotype=protein_coding;locus_tag=AD39_RS13295;old_locus_tag=AD39_2198 NZ_JJLH01000028.1 Protein Homology CDS 214275 214943 . + 0 ID=cds-WP_032283291.1;Parent=gene-AD39_RS13295;Dbxref=GenBank:WP_032283291.1;Name=WP_032283291.1;gbkey=CDS;gene=yedK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310697.1;locus_tag=AD39_RS13295;product=SOS response-associated peptidase;protein_id=WP_032283291.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 215336 215650 . - . ID=gene-AD39_RS13290;Name=fliE;gbkey=Gene;gene=fliE;gene_biotype=protein_coding;locus_tag=AD39_RS13290;old_locus_tag=AD39_2199 NZ_JJLH01000028.1 Protein Homology CDS 215336 215650 . - 0 ID=cds-WP_001274295.1;Parent=gene-AD39_RS13290;Dbxref=GenBank:WP_001274295.1;Name=WP_001274295.1;Ontology_term=GO:0071973,GO:0003774,GO:0009431;gbkey=CDS;gene=fliE;go_component=bacterial-type flagellum basal body%2C MS ring|0009431||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310703.1;locus_tag=AD39_RS13290;product=flagellar hook-basal body complex protein FliE;protein_id=WP_001274295.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 215865 217523 . + . ID=gene-AD39_RS13285;Name=fliF;gbkey=Gene;gene=fliF;gene_biotype=protein_coding;locus_tag=AD39_RS13285;old_locus_tag=AD39_2200 NZ_JJLH01000028.1 Protein Homology CDS 215865 217523 . + 0 ID=cds-WP_000994405.1;Parent=gene-AD39_RS13285;Dbxref=GenBank:WP_000994405.1;Name=WP_000994405.1;Ontology_term=GO:0001539,GO:0005198,GO:0009431;gbkey=CDS;gene=fliF;go_component=bacterial-type flagellum basal body%2C MS ring|0009431||IEA;go_function=structural molecule activity|0005198||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416448.1;locus_tag=AD39_RS13285;product=flagellar basal-body MS-ring/collar protein FliF;protein_id=WP_000994405.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 217516 218511 . + . ID=gene-AD39_RS13280;Name=fliG;gbkey=Gene;gene=fliG;gene_biotype=protein_coding;locus_tag=AD39_RS13280;old_locus_tag=AD39_2201 NZ_JJLH01000028.1 Protein Homology CDS 217516 218511 . + 0 ID=cds-WP_000067950.1;Parent=gene-AD39_RS13280;Dbxref=GenBank:WP_000067950.1;Name=WP_000067950.1;Ontology_term=GO:0006935,GO:0071973,GO:0003774,GO:0009288;gbkey=CDS;gene=fliG;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=chemotaxis|0006935||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310705.1;locus_tag=AD39_RS13280;product=flagellar motor switch protein FliG;protein_id=WP_000067950.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 218504 219190 . + . ID=gene-AD39_RS13275;Name=fliH;gbkey=Gene;gene=fliH;gene_biotype=protein_coding;locus_tag=AD39_RS13275;old_locus_tag=AD39_2202 NZ_JJLH01000028.1 Protein Homology CDS 218504 219190 . + 0 ID=cds-WP_001282709.1;Parent=gene-AD39_RS13275;Dbxref=GenBank:WP_001282709.1;Name=WP_001282709.1;Ontology_term=GO:0071973,GO:0003774,GO:0009288;gbkey=CDS;gene=fliH;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416450.2;locus_tag=AD39_RS13275;product=flagellar assembly protein FliH;protein_id=WP_001282709.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 219190 220563 . + . ID=gene-AD39_RS13270;Name=fliI;gbkey=Gene;gene=fliI;gene_biotype=protein_coding;locus_tag=AD39_RS13270;old_locus_tag=AD39_2203 NZ_JJLH01000028.1 Protein Homology CDS 219190 220563 . + 0 ID=cds-WP_000213294.1;Parent=gene-AD39_RS13270;Dbxref=GenBank:WP_000213294.1;Name=WP_000213294.1;Ontology_term=GO:0044780,GO:0071973,GO:0016887;gbkey=CDS;gene=fliI;go_function=ATP hydrolysis activity|0016887||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416451.1;locus_tag=AD39_RS13270;product=flagellar protein export ATPase FliI;protein_id=WP_000213294.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 220582 221025 . + . ID=gene-AD39_RS13265;Name=fliJ;gbkey=Gene;gene=fliJ;gene_biotype=protein_coding;locus_tag=AD39_RS13265;old_locus_tag=AD39_2204 NZ_JJLH01000028.1 Protein Homology CDS 220582 221025 . + 0 ID=cds-WP_000807584.1;Parent=gene-AD39_RS13265;Dbxref=GenBank:WP_000807584.1;Name=WP_000807584.1;Ontology_term=GO:0071973,GO:0003774,GO:0009288;gbkey=CDS;gene=fliJ;go_component=bacterial-type flagellum|0009288||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310708.1;locus_tag=AD39_RS13265;product=flagellar export protein FliJ;protein_id=WP_000807584.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 221022 222149 . + . ID=gene-AD39_RS13260;Name=fliK;gbkey=Gene;gene=fliK;gene_biotype=protein_coding;locus_tag=AD39_RS13260;old_locus_tag=AD39_2205 NZ_JJLH01000028.1 Protein Homology CDS 221022 222149 . + 0 ID=cds-WP_000620097.1;Parent=gene-AD39_RS13260;Dbxref=GenBank:WP_000620097.1;Name=WP_000620097.1;gbkey=CDS;gene=fliK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707828.1;locus_tag=AD39_RS13260;product=flagellar hook-length control protein FliK;protein_id=WP_000620097.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 222254 222718 . + . ID=gene-AD39_RS13255;Name=fliL;gbkey=Gene;gene=fliL;gene_biotype=protein_coding;locus_tag=AD39_RS13255;old_locus_tag=AD39_2206 NZ_JJLH01000028.1 Protein Homology CDS 222254 222718 . + 0 ID=cds-WP_000133119.1;Parent=gene-AD39_RS13255;Dbxref=GenBank:WP_000133119.1;Name=WP_000133119.1;Ontology_term=GO:0006935,GO:0071973,GO:0009425;gbkey=CDS;gene=fliL;go_component=bacterial-type flagellum basal body|0009425||IEA;go_process=chemotaxis|0006935||IEA,bacterial-type flagellum-dependent cell motility|0071973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310710.1;locus_tag=AD39_RS13255;product=flagellar basal body-associated protein FliL;protein_id=WP_000133119.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 222723 223727 . + . ID=gene-AD39_RS13250;Name=fliM;gbkey=Gene;gene=fliM;gene_biotype=protein_coding;locus_tag=AD39_RS13250;old_locus_tag=AD39_2207 NZ_JJLH01000028.1 Protein Homology CDS 222723 223727 . + 0 ID=cds-WP_032177385.1;Parent=gene-AD39_RS13250;Dbxref=GenBank:WP_032177385.1;Name=WP_032177385.1;Ontology_term=GO:0001539,GO:0009288;gbkey=CDS;gene=fliM;go_component=bacterial-type flagellum|0009288||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005127760.1;locus_tag=AD39_RS13250;product=flagellar motor switch protein FliM;protein_id=WP_032177385.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 223724 224137 . + . ID=gene-AD39_RS13245;Name=fliN;gbkey=Gene;gene=fliN;gene_biotype=protein_coding;locus_tag=AD39_RS13245;old_locus_tag=AD39_2208 NZ_JJLH01000028.1 Protein Homology CDS 223724 224137 . + 0 ID=cds-WP_001282098.1;Parent=gene-AD39_RS13245;Dbxref=GenBank:WP_001282098.1;Name=WP_001282098.1;Ontology_term=GO:0001539,GO:0003774,GO:0009288,GO:0016020;gbkey=CDS;gene=fliN;go_component=bacterial-type flagellum|0009288||IEA,membrane|0016020||IEA;go_function=cytoskeletal motor activity|0003774||IEA;go_process=cilium or flagellum-dependent cell motility|0001539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310712.1;locus_tag=AD39_RS13245;product=flagellar motor switch protein FliN;protein_id=WP_001282098.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 224140 224505 . + . ID=gene-AD39_RS13240;Name=fliO;gbkey=Gene;gene=fliO;gene_biotype=protein_coding;locus_tag=AD39_RS13240;old_locus_tag=AD39_2209 NZ_JJLH01000028.1 Protein Homology CDS 224140 224505 . + 0 ID=cds-WP_001295640.1;Parent=gene-AD39_RS13240;Dbxref=GenBank:WP_001295640.1;Name=WP_001295640.1;Ontology_term=GO:0044781,GO:0016020;gbkey=CDS;gene=fliO;go_component=membrane|0016020||IEA;go_process=bacterial-type flagellum organization|0044781||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310713.2;locus_tag=AD39_RS13240;product=flagellar biosynthetic protein FliO;protein_id=WP_001295640.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 224505 225242 . + . ID=gene-AD39_RS13235;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=AD39_RS13235;old_locus_tag=AD39_2210 NZ_JJLH01000028.1 Protein Homology CDS 224505 225242 . + 0 ID=cds-WP_001253450.1;Parent=gene-AD39_RS13235;Dbxref=GenBank:WP_001253450.1;Name=WP_001253450.1;Note=The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly.;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;gene=fliP;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310714.1;locus_tag=AD39_RS13235;product=flagellar type III secretion system pore protein FliP;protein_id=WP_001253450.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 225252 225521 . + . ID=gene-AD39_RS13230;Name=fliQ;gbkey=Gene;gene=fliQ;gene_biotype=protein_coding;locus_tag=AD39_RS13230;old_locus_tag=AD39_2211 NZ_JJLH01000028.1 Protein Homology CDS 225252 225521 . + 0 ID=cds-WP_000187358.1;Parent=gene-AD39_RS13230;Dbxref=GenBank:WP_000187358.1;Name=WP_000187358.1;Ontology_term=GO:0044780,GO:0016020;gbkey=CDS;gene=fliQ;go_component=membrane|0016020||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013365797.1;locus_tag=AD39_RS13230;product=flagellar biosynthesis protein FliQ;protein_id=WP_000187358.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 225530 226315 . + . ID=gene-AD39_RS13225;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;locus_tag=AD39_RS13225;old_locus_tag=AD39_2212 NZ_JJLH01000028.1 Protein Homology CDS 225530 226315 . + 0 ID=cds-WP_000983977.1;Parent=gene-AD39_RS13225;Dbxref=GenBank:WP_000983977.1;Name=WP_000983977.1;Ontology_term=GO:0006605,GO:0044780,GO:0016020;gbkey=CDS;gene=fliR;go_component=membrane|0016020||IEA;go_process=protein targeting|0006605||IEA,bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310716.1;locus_tag=AD39_RS13225;product=flagellar biosynthetic protein FliR;protein_id=WP_000983977.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 226605 227228 . + . ID=gene-AD39_RS13220;Name=rcsA;gbkey=Gene;gene=rcsA;gene_biotype=protein_coding;locus_tag=AD39_RS13220;old_locus_tag=AD39_2213 NZ_JJLH01000028.1 Protein Homology CDS 226605 227228 . + 0 ID=cds-WP_000103987.1;Parent=gene-AD39_RS13220;Dbxref=GenBank:WP_000103987.1;Name=WP_000103987.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=rcsA;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707836.1;locus_tag=AD39_RS13220;product=transcriptional regulator RcsA;protein_id=WP_000103987.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 227272 227460 . - . ID=gene-AD39_RS13215;Name=dsrB;gbkey=Gene;gene=dsrB;gene_biotype=protein_coding;locus_tag=AD39_RS13215;old_locus_tag=AD39_2214 NZ_JJLH01000028.1 Protein Homology CDS 227272 227460 . - 0 ID=cds-WP_000867217.1;Parent=gene-AD39_RS13215;Dbxref=GenBank:WP_000867217.1;Name=WP_000867217.1;gbkey=CDS;gene=dsrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310718.1;locus_tag=AD39_RS13215;product=protein DsrB;protein_id=WP_000867217.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 227623 227850 . + . ID=gene-AD39_RS13210;Name=yodD;gbkey=Gene;gene=yodD;gene_biotype=protein_coding;locus_tag=AD39_RS13210;old_locus_tag=AD39_2215 NZ_JJLH01000028.1 Protein Homology CDS 227623 227850 . + 0 ID=cds-WP_000844800.1;Parent=gene-AD39_RS13210;Dbxref=GenBank:WP_000844800.1;Name=WP_000844800.1;gbkey=CDS;gene=yodD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416463.4;locus_tag=AD39_RS13210;product=peroxide/acid resistance protein YodD;protein_id=WP_000844800.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 228148 228963 . + . ID=gene-AD39_RS13205;Name=yedP;gbkey=Gene;gene=yedP;gene_biotype=protein_coding;locus_tag=AD39_RS13205;old_locus_tag=AD39_2216 NZ_JJLH01000028.1 Protein Homology CDS 228148 228963 . + 0 ID=cds-WP_000491499.1;Parent=gene-AD39_RS13205;Dbxref=GenBank:WP_000491499.1;Name=WP_000491499.1;Ontology_term=GO:0051479,GO:0050531;gbkey=CDS;gene=yedP;go_function=mannosyl-3-phosphoglycerate phosphatase activity|0050531||IEA;go_process=mannosylglycerate biosynthetic process|0051479||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310720.1;locus_tag=AD39_RS13205;product=mannosyl-3-phosphoglycerate phosphatase-related protein;protein_id=WP_000491499.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 228960 230654 . - . ID=gene-AD39_RS13200;Name=dgcQ;gbkey=Gene;gene=dgcQ;gene_biotype=protein_coding;locus_tag=AD39_RS13200;old_locus_tag=AD39_2217 NZ_JJLH01000028.1 Protein Homology CDS 228960 230654 . - 0 ID=cds-WP_001351364.1;Parent=gene-AD39_RS13200;Dbxref=GenBank:WP_001351364.1;Name=WP_001351364.1;gbkey=CDS;gene=dgcQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416465.2;locus_tag=AD39_RS13200;product=cellulose biosynthesis regulator diguanylate cyclase DgcQ;protein_id=WP_001351364.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 230892 231074 . - . ID=gene-AD39_RS13195;Name=yodC;gbkey=Gene;gene=yodC;gene_biotype=protein_coding;locus_tag=AD39_RS13195;old_locus_tag=AD39_2218 NZ_JJLH01000028.1 Protein Homology CDS 230892 231074 . - 0 ID=cds-WP_000009306.1;Parent=gene-AD39_RS13195;Dbxref=GenBank:WP_000009306.1;Name=WP_000009306.1;gbkey=CDS;gene=yodC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310722.1;locus_tag=AD39_RS13195;product=YodC family protein;protein_id=WP_000009306.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 231153 232070 . - . ID=gene-AD39_RS13190;Name=yedI;gbkey=Gene;gene=yedI;gene_biotype=protein_coding;locus_tag=AD39_RS13190;old_locus_tag=AD39_2219 NZ_JJLH01000028.1 Protein Homology CDS 231153 232070 . - 0 ID=cds-WP_000922682.1;Parent=gene-AD39_RS13190;Dbxref=GenBank:WP_000922682.1;Name=WP_000922682.1;gbkey=CDS;gene=yedI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310723.1;locus_tag=AD39_RS13190;product=DUF808 domain-containing protein;protein_id=WP_000922682.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 232243 233163 . + . ID=gene-AD39_RS13185;Name=yedA;gbkey=Gene;gene=yedA;gene_biotype=protein_coding;locus_tag=AD39_RS13185;old_locus_tag=AD39_2220 NZ_JJLH01000028.1 Protein Homology CDS 232243 233163 . + 0 ID=cds-WP_001212248.1;Parent=gene-AD39_RS13185;Dbxref=GenBank:WP_001212248.1;Name=WP_001212248.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yedA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310724.1;locus_tag=AD39_RS13185;product=drug/metabolite exporter YedA;protein_id=WP_001212248.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 233152 233622 . - . ID=gene-AD39_RS13180;Name=vsr;gbkey=Gene;gene=vsr;gene_biotype=protein_coding;locus_tag=AD39_RS13180;old_locus_tag=AD39_2221 NZ_JJLH01000028.1 Protein Homology CDS 233152 233622 . - 0 ID=cds-WP_000786004.1;Parent=gene-AD39_RS13180;Dbxref=GenBank:WP_000786004.1;Name=WP_000786004.1;gbkey=CDS;gene=vsr;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416469.1;locus_tag=AD39_RS13180;product=VSPR family DNA mismatch endonuclease;protein_id=WP_000786004.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 233603 235021 . - . ID=gene-AD39_RS13175;Name=dcm;gbkey=Gene;gene=dcm;gene_biotype=protein_coding;locus_tag=AD39_RS13175;old_locus_tag=AD39_2222 NZ_JJLH01000028.1 Protein Homology CDS 233603 235021 . - 0 ID=cds-WP_001157241.1;Parent=gene-AD39_RS13175;Dbxref=GenBank:WP_001157241.1;Name=WP_001157241.1;gbkey=CDS;gene=dcm;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310726.1;locus_tag=AD39_RS13175;product=DNA-cytosine methyltransferase;protein_id=WP_001157241.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 235088 235783 . - . ID=gene-AD39_RS13170;Name=yedJ;gbkey=Gene;gene=yedJ;gene_biotype=protein_coding;locus_tag=AD39_RS13170;old_locus_tag=AD39_2223 NZ_JJLH01000028.1 Protein Homology CDS 235088 235783 . - 0 ID=cds-WP_000365565.1;Parent=gene-AD39_RS13170;Dbxref=GenBank:WP_000365565.1;Name=WP_000365565.1;gbkey=CDS;gene=yedJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416471.1;locus_tag=AD39_RS13170;product=phosphohydrolase;protein_id=WP_000365565.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 235823 236104 . - . ID=gene-AD39_RS13165;Name=drpB;gbkey=Gene;gene=drpB;gene_biotype=protein_coding;locus_tag=AD39_RS13165;old_locus_tag=AD39_2224 NZ_JJLH01000028.1 Protein Homology CDS 235823 236104 . - 0 ID=cds-WP_001297704.1;Parent=gene-AD39_RS13165;Dbxref=GenBank:WP_001297704.1;Name=WP_001297704.1;Ontology_term=GO:0051301;gbkey=CDS;gene=drpB;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001295638.1;locus_tag=AD39_RS13165;product=cell division protein DrpB;protein_id=WP_001297704.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 236756 237970 . + . ID=gene-AD39_RS13160;Name=ompC;gbkey=Gene;gene=ompC;gene_biotype=protein_coding;locus_tag=AD39_RS13160;old_locus_tag=AD39_2225 NZ_JJLH01000028.1 Protein Homology CDS 236756 237970 . + 0 ID=cds-WP_000824402.1;Parent=gene-AD39_RS13160;Dbxref=GenBank:WP_000824402.1;Name=WP_000824402.1;Ontology_term=GO:0034220,GO:0015288;gbkey=CDS;gene=ompC;go_function=porin activity|0015288||IEA;go_process=monoatomic ion transmembrane transport|0034220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001551287.1;locus_tag=AD39_RS13160;product=porin OmpC;protein_id=WP_000824402.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 238562 239413 . + . ID=gene-AD39_RS13155;Name=hchA;gbkey=Gene;gene=hchA;gene_biotype=protein_coding;locus_tag=AD39_RS13155;old_locus_tag=AD39_2227 NZ_JJLH01000028.1 Protein Homology CDS 238562 239413 . + 0 ID=cds-WP_000218209.1;Parent=gene-AD39_RS13155;Dbxref=GenBank:WP_000218209.1;Name=WP_000218209.1;Ontology_term=GO:0036524;gbkey=CDS;gene=hchA;go_function=protein deglycase activity|0036524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416476.1;locus_tag=AD39_RS13155;product=glyoxalase III HchA;protein_id=WP_000218209.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 239521 240879 . - . ID=gene-AD39_RS13150;Name=hprS;gbkey=Gene;gene=hprS;gene_biotype=protein_coding;locus_tag=AD39_RS13150;old_locus_tag=AD39_2228 NZ_JJLH01000028.1 Protein Homology CDS 239521 240879 . - 0 ID=cds-WP_000826746.1;Parent=gene-AD39_RS13150;Dbxref=GenBank:WP_000826746.1;Name=WP_000826746.1;gbkey=CDS;gene=hprS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310733.1;locus_tag=AD39_RS13150;product=two-component system sensor histidine kinase HprS;protein_id=WP_000826746.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 240879 241550 . - . ID=gene-AD39_RS13145;Name=hprR;gbkey=Gene;gene=hprR;gene_biotype=protein_coding;locus_tag=AD39_RS13145;old_locus_tag=AD39_2229 NZ_JJLH01000028.1 Protein Homology CDS 240879 241550 . - 0 ID=cds-WP_001362894.1;Parent=gene-AD39_RS13145;Dbxref=GenBank:WP_001362894.1;Name=WP_001362894.1;gbkey=CDS;gene=hprR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707854.2;locus_tag=AD39_RS13145;product=response regulator transcription factor HprR;protein_id=WP_001362894.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 241683 242096 . + . ID=gene-AD39_RS13140;Name=hiuH;gbkey=Gene;gene=hiuH;gene_biotype=protein_coding;locus_tag=AD39_RS13140;old_locus_tag=AD39_2230 NZ_JJLH01000028.1 Protein Homology CDS 241683 242096 . + 0 ID=cds-WP_000920127.1;Parent=gene-AD39_RS13140;Dbxref=GenBank:WP_000920127.1;Name=WP_000920127.1;gbkey=CDS;gene=hiuH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707855.1;locus_tag=AD39_RS13140;product=hydroxyisourate hydrolase;protein_id=WP_000920127.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 242205 243209 . + . ID=gene-AD39_RS13135;Name=msrP;gbkey=Gene;gene=msrP;gene_biotype=protein_coding;locus_tag=AD39_RS13135;old_locus_tag=AD39_2231 NZ_JJLH01000028.1 Protein Homology CDS 242205 243209 . + 0 ID=cds-WP_000740094.1;Parent=gene-AD39_RS13135;Dbxref=GenBank:WP_000740094.1;Name=WP_000740094.1;Ontology_term=GO:0030091,GO:0016667,GO:0043546;gbkey=CDS;gene=msrP;go_function=oxidoreductase activity%2C acting on a sulfur group of donors|0016667||IEA,molybdopterin cofactor binding|0043546||IEA;go_process=protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310736.1;locus_tag=AD39_RS13135;product=protein-methionine-sulfoxide reductase catalytic subunit MsrP;protein_id=WP_000740094.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 243210 243845 . + . ID=gene-AD39_RS13130;Name=msrQ;gbkey=Gene;gene=msrQ;gene_biotype=protein_coding;locus_tag=AD39_RS13130;old_locus_tag=AD39_2232 NZ_JJLH01000028.1 Protein Homology CDS 243210 243845 . + 0 ID=cds-WP_001240105.1;Parent=gene-AD39_RS13130;Dbxref=GenBank:WP_001240105.1;Name=WP_001240105.1;gbkey=CDS;gene=msrQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416481.1;locus_tag=AD39_RS13130;product=protein-methionine-sulfoxide reductase heme-binding subunit MsrQ;protein_id=WP_001240105.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 244102 244752 . + . ID=gene-AD39_RS13125;Name=zinT;gbkey=Gene;gene=zinT;gene_biotype=protein_coding;locus_tag=AD39_RS13125;old_locus_tag=AD39_2233 NZ_JJLH01000028.1 Protein Homology CDS 244102 244752 . + 0 ID=cds-WP_032151747.1;Parent=gene-AD39_RS13125;Dbxref=GenBank:WP_032151747.1;Name=WP_032151747.1;Ontology_term=GO:0008270;gbkey=CDS;gene=zinT;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416482.1;locus_tag=AD39_RS13125;product=metal-binding protein ZinT;protein_id=WP_032151747.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 245095 245625 . + . ID=gene-AD39_RS0124390;Name=yodB;gbkey=Gene;gene=yodB;gene_biotype=protein_coding;locus_tag=AD39_RS0124390;old_locus_tag=AD39_2234 NZ_JJLH01000028.1 Protein Homology CDS 245095 245625 . + 0 ID=cds-WP_001079074.1;Parent=gene-AD39_RS0124390;Dbxref=GenBank:WP_001079074.1;Name=WP_001079074.1;Ontology_term=GO:0022904,GO:0009055,GO:0020037,GO:0046872,GO:0016020;gbkey=CDS;gene=yodB;go_component=membrane|0016020||IEA;go_function=electron transfer activity|0009055||IEA,heme binding|0020037||IEA,metal ion binding|0046872||IEA;go_process=respiratory electron transport chain|0022904||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416483.4;locus_tag=AD39_RS0124390;product=cytochrome b;protein_id=WP_001079074.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 246195 246284 . - . ID=gene-AD39_RS13120;Name=AD39_RS13120;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS13120;old_locus_tag=AD39_2236 NZ_JJLH01000028.1 tRNAscan-SE tRNA 246195 246284 . - . ID=rna-AD39_RS13120;Parent=gene-AD39_RS13120;anticodon=(pos:complement(246248..246250));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS13120;product=tRNA-Ser NZ_JJLH01000028.1 tRNAscan-SE exon 246195 246284 . - . ID=exon-AD39_RS13120-1;Parent=rna-AD39_RS13120;anticodon=(pos:complement(246248..246250));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS13120;product=tRNA-Ser NZ_JJLH01000028.1 RefSeq gene 246378 247175 . + . ID=gene-AD39_RS13115;Name=mtfA;gbkey=Gene;gene=mtfA;gene_biotype=protein_coding;locus_tag=AD39_RS13115;old_locus_tag=AD39_2237 NZ_JJLH01000028.1 Protein Homology CDS 246378 247175 . + 0 ID=cds-WP_001442913.1;Parent=gene-AD39_RS13115;Dbxref=GenBank:WP_001442913.1;Name=WP_001442913.1;Ontology_term=GO:0008237;gbkey=CDS;gene=mtfA;go_function=metallopeptidase activity|0008237||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310801.2;locus_tag=AD39_RS13115;product=DgsA anti-repressor MtfA;protein_id=WP_001442913.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 247276 247351 . + . ID=gene-AD39_RS13110;Name=AD39_RS13110;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS13110;old_locus_tag=AD39_2238 NZ_JJLH01000028.1 tRNAscan-SE tRNA 247276 247351 . + . ID=rna-AD39_RS13110;Parent=gene-AD39_RS13110;anticodon=(pos:247309..247311);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS13110;product=tRNA-Asn NZ_JJLH01000028.1 tRNAscan-SE exon 247276 247351 . + . ID=exon-AD39_RS13110-1;Parent=rna-AD39_RS13110;anticodon=(pos:247309..247311);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS13110;product=tRNA-Asn NZ_JJLH01000028.1 RefSeq gene 247518 248780 . + . ID=gene-AD39_RS13105;Name=AD39_RS13105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13105;old_locus_tag=AD39_2239 NZ_JJLH01000028.1 Protein Homology CDS 247518 248780 . + 0 ID=cds-WP_032287564.1;Parent=gene-AD39_RS13105;Dbxref=GenBank:WP_032287564.1;Name=WP_032287564.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001219032.1;locus_tag=AD39_RS13105;product=tyrosine-type recombinase/integrase;protein_id=WP_032287564.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 249282 249560 . - . ID=gene-AD39_RS13100;Name=AD39_RS13100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13100;old_locus_tag=AD39_2240 NZ_JJLH01000028.1 Protein Homology CDS 249282 249560 . - 0 ID=cds-WP_023155530.1;Parent=gene-AD39_RS13100;Dbxref=GenBank:WP_023155530.1;Name=WP_023155530.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016248850.1;locus_tag=AD39_RS13100;product=helix-turn-helix domain-containing protein;protein_id=WP_023155530.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 249656 249922 . - . ID=gene-AD39_RS0124405;Name=AD39_RS0124405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124405 NZ_JJLH01000028.1 Protein Homology CDS 249656 249922 . - 0 ID=cds-WP_023155529.1;Parent=gene-AD39_RS0124405;Dbxref=GenBank:WP_023155529.1;Name=WP_023155529.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013316693.1;locus_tag=AD39_RS0124405;product=helix-turn-helix domain-containing protein;protein_id=WP_023155529.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 250042 250290 . + . ID=gene-AD39_RS13095;Name=AD39_RS13095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13095;old_locus_tag=AD39_2242 NZ_JJLH01000028.1 Protein Homology CDS 250042 250290 . + 0 ID=cds-WP_024166695.1;Parent=gene-AD39_RS13095;Dbxref=GenBank:WP_024166695.1;Name=WP_024166695.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016248848.1;locus_tag=AD39_RS13095;product=helix-turn-helix domain-containing protein;protein_id=WP_024166695.1;transl_table=11 NZ_JJLH01000028.1 RefSeq pseudogene 251220 251909 . + . ID=gene-AD39_RS0124415;Name=AD39_RS0124415;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0124415;pseudo=true NZ_JJLH01000028.1 Protein Homology CDS 251220 251909 . + 0 ID=cds-AD39_RS0124415;Parent=gene-AD39_RS0124415;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001587348.1;locus_tag=AD39_RS0124415;product=integrase domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 252137 253453 . - . ID=gene-AD39_RS13090;Name=AD39_RS13090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13090;old_locus_tag=AD39_2249 NZ_JJLH01000028.1 Protein Homology CDS 252137 253453 . - 0 ID=cds-WP_032283293.1;Parent=gene-AD39_RS13090;Dbxref=GenBank:WP_032283293.1;Name=WP_032283293.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007711805.1;locus_tag=AD39_RS13090;product=hypothetical protein;protein_id=WP_032283293.1;transl_table=11 NZ_JJLH01000028.1 RefSeq pseudogene 254207 261284 . + . ID=gene-AD39_RS0124425;Name=yeeJ;gbkey=Gene;gene=yeeJ;gene_biotype=pseudogene;locus_tag=AD39_RS0124425;pseudo=true NZ_JJLH01000028.1 Protein Homology CDS 254207 261284 . + 0 ID=cds-AD39_RS0124425;Parent=gene-AD39_RS0124425;Note=frameshifted;gbkey=CDS;gene=yeeJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416485.4;locus_tag=AD39_RS0124425;product=inverse autotransporter adhesin YeeJ;pseudo=true;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 261546 262598 . - . ID=gene-AD39_RS13085;Name=AD39_RS13085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13085;old_locus_tag=AD39_2252 NZ_JJLH01000028.1 Protein Homology CDS 261546 262598 . - 0 ID=cds-WP_000477884.1;Parent=gene-AD39_RS13085;Dbxref=GenBank:WP_000477884.1;Name=WP_000477884.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310804.1;locus_tag=AD39_RS13085;product=glycosyltransferase family 9 protein;protein_id=WP_000477884.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 262913 264229 . + . ID=gene-AD39_RS13080;Name=shiA;gbkey=Gene;gene=shiA;gene_biotype=protein_coding;locus_tag=AD39_RS13080;old_locus_tag=AD39_2253 NZ_JJLH01000028.1 Protein Homology CDS 262913 264229 . + 0 ID=cds-WP_000378564.1;Parent=gene-AD39_RS13080;Dbxref=GenBank:WP_000378564.1;Name=WP_000378564.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=shiA;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416488.1;locus_tag=AD39_RS13080;product=shikimate transporter;protein_id=WP_000378564.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 264331 265785 . + . ID=gene-AD39_RS13075;Name=amn;gbkey=Gene;gene=amn;gene_biotype=protein_coding;locus_tag=AD39_RS13075;old_locus_tag=AD39_2254 NZ_JJLH01000028.1 Protein Homology CDS 264331 265785 . + 0 ID=cds-WP_001060244.1;Parent=gene-AD39_RS13075;Dbxref=GenBank:WP_001060244.1;Name=WP_001060244.1;Ontology_term=GO:0009116,GO:0044209,GO:0008714;gbkey=CDS;gene=amn;go_function=AMP nucleosidase activity|0008714||IEA;go_process=nucleoside metabolic process|0009116||IEA,AMP salvage|0044209||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310806.1;locus_tag=AD39_RS13075;product=AMP nucleosidase;protein_id=WP_001060244.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 266128 266844 . + . ID=gene-AD39_RS13070;Name=yeeN;gbkey=Gene;gene=yeeN;gene_biotype=protein_coding;locus_tag=AD39_RS13070;old_locus_tag=AD39_2255 NZ_JJLH01000028.1 Protein Homology CDS 266128 266844 . + 0 ID=cds-WP_000532912.1;Parent=gene-AD39_RS13070;Dbxref=GenBank:WP_000532912.1;Name=WP_000532912.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=yeeN;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310807.1;locus_tag=AD39_RS13070;product=YebC/PmpR family DNA-binding transcriptional regulator;protein_id=WP_000532912.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 267676 268551 . + . ID=gene-AD39_RS13065;Name=AD39_RS13065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13065;old_locus_tag=AD39_2258 NZ_JJLH01000028.1 Protein Homology CDS 267676 268551 . + 0 ID=cds-WP_032283295.1;Parent=gene-AD39_RS13065;Dbxref=GenBank:WP_032283295.1;Name=WP_032283295.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000166882.1;locus_tag=AD39_RS13065;product=DUF6387 family protein;protein_id=WP_032283295.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 268702 268920 . + . ID=gene-AD39_RS13060;Name=AD39_RS13060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13060;old_locus_tag=AD39_2259 NZ_JJLH01000028.1 Protein Homology CDS 268702 268920 . + 0 ID=cds-WP_023155944.1;Parent=gene-AD39_RS13060;Dbxref=GenBank:WP_023155944.1;Name=WP_023155944.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000240778.1;locus_tag=AD39_RS13060;product=helix-turn-helix transcriptional regulator;protein_id=WP_023155944.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 269002 269292 . + . ID=gene-AD39_RS13055;Name=AD39_RS13055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13055;old_locus_tag=AD39_2260 NZ_JJLH01000028.1 Protein Homology CDS 269002 269292 . + 0 ID=cds-WP_032283296.1;Parent=gene-AD39_RS13055;Dbxref=GenBank:WP_032283296.1;Name=WP_032283296.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001524933.1;locus_tag=AD39_RS13055;product=hypothetical protein;protein_id=WP_032283296.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 269337 269633 . + . ID=gene-AD39_RS13050;Name=AD39_RS13050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13050;old_locus_tag=AD39_2261 NZ_JJLH01000028.1 Protein Homology CDS 269337 269633 . + 0 ID=cds-WP_032283297.1;Parent=gene-AD39_RS13050;Dbxref=GenBank:WP_032283297.1;Name=WP_032283297.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001091325.1;locus_tag=AD39_RS13050;product=hypothetical protein;protein_id=WP_032283297.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 269774 270016 . + . ID=gene-AD39_RS13045;Name=AD39_RS13045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13045;old_locus_tag=AD39_2262 NZ_JJLH01000028.1 Protein Homology CDS 269774 270016 . + 0 ID=cds-WP_032283299.1;Parent=gene-AD39_RS13045;Dbxref=GenBank:WP_032283299.1;Name=WP_032283299.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000564592.1;locus_tag=AD39_RS13045;product=DNA-binding protein;protein_id=WP_032283299.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 270125 270475 . + . ID=gene-AD39_RS0124430;Name=AD39_RS0124430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124430 NZ_JJLH01000028.1 Protein Homology CDS 270125 270475 . + 0 ID=cds-WP_032283301.1;Parent=gene-AD39_RS0124430;Dbxref=GenBank:WP_032283301.1;Name=WP_032283301.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000505227.1;locus_tag=AD39_RS0124430;product=DUF6404 family protein;protein_id=WP_032283301.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 270539 270943 . - . ID=gene-AD39_RS13040;Name=AD39_RS13040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13040;old_locus_tag=AD39_2263 NZ_JJLH01000028.1 Protein Homology CDS 270539 270943 . - 0 ID=cds-WP_032283303.1;Parent=gene-AD39_RS13040;Dbxref=GenBank:WP_032283303.1;Name=WP_032283303.1;Ontology_term=GO:0006355,GO:0003677,GO:0030527;gbkey=CDS;go_function=DNA binding|0003677||IEA,structural constituent of chromatin|0030527||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001519859.1;locus_tag=AD39_RS13040;product=H-NS family nucleoid-associated regulatory protein;protein_id=WP_032283303.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 271101 271580 . - . ID=gene-AD39_RS13035;Name=AD39_RS13035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13035;old_locus_tag=AD39_2264 NZ_JJLH01000028.1 Protein Homology CDS 271101 271580 . - 0 ID=cds-WP_032283305.1;Parent=gene-AD39_RS13035;Dbxref=GenBank:WP_032283305.1;Name=WP_032283305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001233373.1;locus_tag=AD39_RS13035;product=DUF4756 family protein;protein_id=WP_032283305.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 271670 272377 . - . ID=gene-AD39_RS13030;Name=AD39_RS13030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13030;old_locus_tag=AD39_2265 NZ_JJLH01000028.1 Protein Homology CDS 271670 272377 . - 0 ID=cds-WP_032283307.1;Parent=gene-AD39_RS13030;Dbxref=GenBank:WP_032283307.1;Name=WP_032283307.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001588076.1;locus_tag=AD39_RS13030;product=hypothetical protein;protein_id=WP_032283307.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 273720 274073 . + . ID=gene-AD39_RS0124435;Name=AD39_RS0124435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124435 NZ_JJLH01000028.1 Protein Homology CDS 273720 274073 . + 0 ID=cds-WP_044722547.1;Parent=gene-AD39_RS0124435;Dbxref=GenBank:WP_044722547.1;Name=WP_044722547.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001226458.1;locus_tag=AD39_RS0124435;product=hypothetical protein;protein_id=WP_044722547.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 274111 275073 . + . ID=gene-AD39_RS13025;Name=AD39_RS13025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13025;old_locus_tag=AD39_2267 NZ_JJLH01000028.1 Protein Homology CDS 274111 275073 . + 0 ID=cds-WP_032283312.1;Parent=gene-AD39_RS13025;Dbxref=GenBank:WP_032283312.1;Name=WP_032283312.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000398601.1;locus_tag=AD39_RS13025;product=hypothetical protein;protein_id=WP_032283312.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 275134 276306 . + . ID=gene-AD39_RS13020;Name=AD39_RS13020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13020;old_locus_tag=AD39_2268 NZ_JJLH01000028.1 Protein Homology CDS 275134 276306 . + 0 ID=cds-WP_032196980.1;Parent=gene-AD39_RS13020;Dbxref=GenBank:WP_032196980.1;Name=WP_032196980.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001120270.1;locus_tag=AD39_RS13020;product=ComEA family DNA-binding protein;protein_id=WP_032196980.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 276398 276775 . - . ID=gene-AD39_RS13015;Name=AD39_RS13015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13015;old_locus_tag=AD39_2269 NZ_JJLH01000028.1 Protein Homology CDS 276398 276775 . - 0 ID=cds-WP_032283313.1;Parent=gene-AD39_RS13015;Dbxref=GenBank:WP_032283313.1;Name=WP_032283313.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000734570.1;locus_tag=AD39_RS13015;product=hypothetical protein;protein_id=WP_032283313.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 276807 277280 . - . ID=gene-AD39_RS13010;Name=AD39_RS13010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13010;old_locus_tag=AD39_2270 NZ_JJLH01000028.1 Protein Homology CDS 276807 277280 . - 0 ID=cds-WP_032283314.1;Parent=gene-AD39_RS13010;Dbxref=GenBank:WP_032283314.1;Name=WP_032283314.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001351134.1;locus_tag=AD39_RS13010;product=DUF4755 domain-containing protein;protein_id=WP_032283314.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 277713 278243 . + . ID=gene-AD39_RS13005;Name=AD39_RS13005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13005;old_locus_tag=AD39_2272 NZ_JJLH01000028.1 Protein Homology CDS 277713 278243 . + 0 ID=cds-WP_032283315.1;Parent=gene-AD39_RS13005;Dbxref=GenBank:WP_032283315.1;Name=WP_032283315.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001608353.1;locus_tag=AD39_RS13005;product=lipoprotein;protein_id=WP_032283315.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 278254 278529 . + . ID=gene-AD39_RS13000;Name=AD39_RS13000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS13000;old_locus_tag=AD39_2273 NZ_JJLH01000028.1 Protein Homology CDS 278254 278529 . + 0 ID=cds-WP_032283317.1;Parent=gene-AD39_RS13000;Dbxref=GenBank:WP_032283317.1;Name=WP_032283317.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004151481.1;locus_tag=AD39_RS13000;product=hypothetical protein;protein_id=WP_032283317.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 278588 279424 . - . ID=gene-AD39_RS12995;Name=AD39_RS12995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12995;old_locus_tag=AD39_2274 NZ_JJLH01000028.1 Protein Homology CDS 278588 279424 . - 0 ID=cds-WP_032283318.1;Parent=gene-AD39_RS12995;Dbxref=GenBank:WP_032283318.1;Name=WP_032283318.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016245220.1;locus_tag=AD39_RS12995;product=macro domain-containing protein;protein_id=WP_032283318.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 279561 280070 . + . ID=gene-AD39_RS0124440;Name=AD39_RS0124440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124440 NZ_JJLH01000028.1 Protein Homology CDS 279561 280070 . + 0 ID=cds-WP_032283319.1;Parent=gene-AD39_RS0124440;Dbxref=GenBank:WP_032283319.1;Name=WP_032283319.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001557318.1;locus_tag=AD39_RS0124440;product=TIR domain-containing protein;protein_id=WP_032283319.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 280202 281125 . - . ID=gene-AD39_RS12990;Name=tcpC;gbkey=Gene;gene=tcpC;gene_biotype=protein_coding;locus_tag=AD39_RS12990;old_locus_tag=AD39_2275 NZ_JJLH01000028.1 Protein Homology CDS 280202 281125 . - 0 ID=cds-WP_042003858.1;Parent=gene-AD39_RS12990;Dbxref=GenBank:WP_042003858.1;Name=WP_042003858.1;gbkey=CDS;gene=tcpC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000562556.1;locus_tag=AD39_RS12990;product=NAD(+) hydrolase TcpC;protein_id=WP_042003858.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 281182 282684 . - . ID=gene-AD39_RS12985;Name=mobQ;gbkey=Gene;gene=mobQ;gene_biotype=protein_coding;locus_tag=AD39_RS12985;old_locus_tag=AD39_2276 NZ_JJLH01000028.1 Protein Homology CDS 281182 282684 . - 0 ID=cds-WP_032283320.1;Parent=gene-AD39_RS12985;Dbxref=GenBank:WP_032283320.1;Name=WP_032283320.1;gbkey=CDS;gene=mobQ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001332081.1;locus_tag=AD39_RS12985;product=MobQ family relaxase;protein_id=WP_032283320.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 283330 283635 . + . ID=gene-AD39_RS0124445;Name=AD39_RS0124445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124445 NZ_JJLH01000028.1 Protein Homology CDS 283330 283635 . + 0 ID=cds-WP_000342565.1;Parent=gene-AD39_RS0124445;Dbxref=GenBank:WP_000342565.1;Name=WP_000342565.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000368354.1;locus_tag=AD39_RS0124445;product=conjugal transfer protein TraD;protein_id=WP_000342565.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 284033 284590 . + . ID=gene-AD39_RS12980;Name=bfpA;gbkey=Gene;gene=bfpA;gene_biotype=protein_coding;locus_tag=AD39_RS12980;old_locus_tag=AD39_2279 NZ_JJLH01000028.1 Protein Homology CDS 284033 284590 . + 0 ID=cds-WP_032283321.1;Parent=gene-AD39_RS12980;Dbxref=GenBank:WP_032283321.1;Name=WP_032283321.1;gbkey=CDS;gene=bfpA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000243508.1;locus_tag=AD39_RS12980;product=type IV pilus major subunit protein BfpA;protein_id=WP_032283321.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 284643 286091 . + . ID=gene-AD39_RS12975;Name=pilV;gbkey=Gene;gene=pilV;gene_biotype=protein_coding;locus_tag=AD39_RS12975;old_locus_tag=AD39_2280 NZ_JJLH01000028.1 Protein Homology CDS 284643 286091 . + 0 ID=cds-WP_032283322.1;Parent=gene-AD39_RS12975;Dbxref=GenBank:WP_032283322.1;Name=WP_032283322.1;gbkey=CDS;gene=pilV;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000592083.1;locus_tag=AD39_RS12975;product=shufflon system plasmid conjugative transfer pilus tip adhesin PilV;protein_id=WP_032283322.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 286350 286745 . - . ID=gene-AD39_RS0124450;Name=AD39_RS0124450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124450 NZ_JJLH01000028.1 Protein Homology CDS 286350 286745 . - 0 ID=cds-WP_032283323.1;Parent=gene-AD39_RS0124450;Dbxref=GenBank:WP_032283323.1;Name=WP_032283323.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001281575.1;locus_tag=AD39_RS0124450;product=hypothetical protein;protein_id=WP_032283323.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 286748 287674 . - . ID=gene-AD39_RS12970;Name=AD39_RS12970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12970;old_locus_tag=AD39_2282 NZ_JJLH01000028.1 Protein Homology CDS 286748 287674 . - 0 ID=cds-WP_032283325.1;Parent=gene-AD39_RS12970;Dbxref=GenBank:WP_032283325.1;Name=WP_032283325.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001167692.1;locus_tag=AD39_RS12970;product=ParA family protein;protein_id=WP_032283325.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 287861 289135 . - . ID=gene-AD39_RS12965;Name=AD39_RS12965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12965;old_locus_tag=AD39_2283 NZ_JJLH01000028.1 Protein Homology CDS 287861 289135 . - 0 ID=cds-WP_032287571.1;Parent=gene-AD39_RS12965;Dbxref=GenBank:WP_032287571.1;Name=WP_032287571.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001751368.1;locus_tag=AD39_RS12965;product=tyrosine-type recombinase/integrase;protein_id=WP_032287571.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 289315 289390 . - . ID=gene-AD39_RS12960;Name=AD39_RS12960;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS12960;old_locus_tag=AD39_2284 NZ_JJLH01000028.1 tRNAscan-SE tRNA 289315 289390 . - . ID=rna-AD39_RS12960;Parent=gene-AD39_RS12960;anticodon=(pos:complement(289355..289357));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS12960;product=tRNA-Asn NZ_JJLH01000028.1 tRNAscan-SE exon 289315 289390 . - . ID=exon-AD39_RS12960-1;Parent=rna-AD39_RS12960;anticodon=(pos:complement(289355..289357));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS12960;product=tRNA-Asn NZ_JJLH01000028.1 RefSeq gene 289491 290978 . - . ID=gene-AD39_RS12955;Name=yeeO;gbkey=Gene;gene=yeeO;gene_biotype=protein_coding;locus_tag=AD39_RS12955;old_locus_tag=AD39_2285 NZ_JJLH01000028.1 Protein Homology CDS 289491 290978 . - 0 ID=cds-WP_077757160.1;Parent=gene-AD39_RS12955;Dbxref=GenBank:WP_077757160.1;Name=WP_077757160.1;gbkey=CDS;gene=yeeO;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001323172.1;locus_tag=AD39_RS12955;product=toxic metabolite efflux MATE transporter YeeO;protein_id=WP_077757160.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 291139 291214 . + . ID=gene-AD39_RS12950;Name=AD39_RS12950;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS12950;old_locus_tag=AD39_2286 NZ_JJLH01000028.1 tRNAscan-SE tRNA 291139 291214 . + . ID=rna-AD39_RS12950;Parent=gene-AD39_RS12950;anticodon=(pos:291172..291174);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS12950;product=tRNA-Asn NZ_JJLH01000028.1 tRNAscan-SE exon 291139 291214 . + . ID=exon-AD39_RS12950-1;Parent=rna-AD39_RS12950;anticodon=(pos:291172..291174);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS12950;product=tRNA-Asn NZ_JJLH01000028.1 RefSeq gene 291252 292202 . - . ID=gene-AD39_RS12945;Name=cbl;gbkey=Gene;gene=cbl;gene_biotype=protein_coding;locus_tag=AD39_RS12945;old_locus_tag=AD39_2287 NZ_JJLH01000028.1 Protein Homology CDS 291252 292202 . - 0 ID=cds-WP_001011034.1;Parent=gene-AD39_RS12945;Dbxref=GenBank:WP_001011034.1;Name=WP_001011034.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=cbl;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416492.1;locus_tag=AD39_RS12945;product=HTH-type transcriptional regulator Cbl;protein_id=WP_001011034.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 292304 293221 . - . ID=gene-AD39_RS12940;Name=nac;gbkey=Gene;gene=nac;gene_biotype=protein_coding;locus_tag=AD39_RS12940;old_locus_tag=AD39_2288 NZ_JJLH01000028.1 Protein Homology CDS 292304 293221 . - 0 ID=cds-WP_001011461.1;Parent=gene-AD39_RS12940;Dbxref=GenBank:WP_001011461.1;Name=WP_001011461.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=nac;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416493.1;locus_tag=AD39_RS12940;product=nitrogen assimilation transcriptional regulator NAC;protein_id=WP_001011461.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 293548 293623 . + . ID=gene-AD39_RS12935;Name=AD39_RS12935;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS12935;old_locus_tag=AD39_2289 NZ_JJLH01000028.1 tRNAscan-SE tRNA 293548 293623 . + . ID=rna-AD39_RS12935;Parent=gene-AD39_RS12935;anticodon=(pos:293581..293583);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS12935;product=tRNA-Asn NZ_JJLH01000028.1 tRNAscan-SE exon 293548 293623 . + . ID=exon-AD39_RS12935-1;Parent=rna-AD39_RS12935;anticodon=(pos:293581..293583);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS12935;product=tRNA-Asn NZ_JJLH01000028.1 RefSeq gene 293679 294614 . - . ID=gene-AD39_RS12930;Name=ldtA;gbkey=Gene;gene=ldtA;gene_biotype=protein_coding;locus_tag=AD39_RS12930;old_locus_tag=AD39_2290 NZ_JJLH01000028.1 Protein Homology CDS 293679 294614 . - 0 ID=cds-WP_148725095.1;Parent=gene-AD39_RS12930;Dbxref=GenBank:WP_148725095.1;Name=WP_148725095.1;Ontology_term=GO:0016740;gbkey=CDS;gene=ldtA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310812.2;locus_tag=AD39_RS12930;product=L%2CD-transpeptidase;protein_id=WP_148725095.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 294676 295755 . - . ID=gene-AD39_RS12925;Name=cobT;gbkey=Gene;gene=cobT;gene_biotype=protein_coding;locus_tag=AD39_RS12925;old_locus_tag=AD39_2291 NZ_JJLH01000028.1 Protein Homology CDS 294676 295755 . - 0 ID=cds-WP_032287567.1;Parent=gene-AD39_RS12925;Dbxref=GenBank:WP_032287567.1;Name=WP_032287567.1;Ontology_term=GO:0009236,GO:0008939;gbkey=CDS;gene=cobT;go_function=nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity|0008939||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310813.1;locus_tag=AD39_RS12925;product=nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase;protein_id=WP_032287567.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 295767 296510 . - . ID=gene-AD39_RS12920;Name=cobS;gbkey=Gene;gene=cobS;gene_biotype=protein_coding;locus_tag=AD39_RS12920;old_locus_tag=AD39_2292 NZ_JJLH01000028.1 Protein Homology CDS 295767 296510 . - 0 ID=cds-WP_001297350.1;Parent=gene-AD39_RS12920;Dbxref=GenBank:WP_001297350.1;Name=WP_001297350.1;Ontology_term=GO:0009236,GO:0008818,GO:0051073;gbkey=CDS;gene=cobS;go_function=cobalamin 5'-phosphate synthase activity|0008818||IEA,adenosylcobinamide-GDP ribazoletransferase activity|0051073||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310814.1;locus_tag=AD39_RS12920;product=adenosylcobinamide-GDP ribazoletransferase;protein_id=WP_001297350.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 296507 297052 . - . ID=gene-AD39_RS12915;Name=cobU;gbkey=Gene;gene=cobU;gene_biotype=protein_coding;locus_tag=AD39_RS12915;old_locus_tag=AD39_2293 NZ_JJLH01000028.1 Protein Homology CDS 296507 297052 . - 0 ID=cds-WP_000973159.1;Parent=gene-AD39_RS12915;Dbxref=GenBank:WP_000973159.1;Name=WP_000973159.1;Ontology_term=GO:0009236,GO:0000166,GO:0043752;gbkey=CDS;gene=cobU;go_function=nucleotide binding|0000166||IEA,adenosylcobinamide kinase activity|0043752||IEA;go_process=cobalamin biosynthetic process|0009236||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416497.1;locus_tag=AD39_RS12915;product=bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase;protein_id=WP_000973159.1;transl_table=11 NZ_JJLH01000028.1 RefSeq pseudogene 297234 297410 . + . ID=gene-AD39_RS27045;Name=AD39_RS27045;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS27045;partial=true;pseudo=true;start_range=.,297234 NZ_JJLH01000028.1 Protein Homology CDS 297234 297410 . + 0 ID=cds-AD39_RS27045;Parent=gene-AD39_RS27045;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006576,GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;go_process=biogenic amine metabolic process|0006576||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001585847.1;locus_tag=AD39_RS27045;partial=true;product=EutP/PduV family microcompartment system protein;pseudo=true;start_range=.,297234;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 297511 297840 . - . ID=gene-AD39_RS12910;Name=tmaR;gbkey=Gene;gene=tmaR;gene_biotype=protein_coding;locus_tag=AD39_RS12910;old_locus_tag=AD39_2294 NZ_JJLH01000028.1 Protein Homology CDS 297511 297840 . - 0 ID=cds-WP_000450409.1;Parent=gene-AD39_RS12910;Dbxref=GenBank:WP_000450409.1;Name=WP_000450409.1;gbkey=CDS;gene=tmaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310836.2;locus_tag=AD39_RS12910;product=DUF496 family protein;protein_id=WP_000450409.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 298012 299070 . - . ID=gene-AD39_RS12905;Name=yeeA;gbkey=Gene;gene=yeeA;gene_biotype=protein_coding;locus_tag=AD39_RS12905;old_locus_tag=AD39_2296 NZ_JJLH01000028.1 Protein Homology CDS 298012 299070 . - 0 ID=cds-WP_001200891.1;Parent=gene-AD39_RS12905;Dbxref=GenBank:WP_001200891.1;Name=WP_001200891.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;gene=yeeA;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416512.1;locus_tag=AD39_RS12905;product=FUSC family protein;protein_id=WP_001200891.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 299268 299741 . - . ID=gene-AD39_RS12900;Name=sbmC;gbkey=Gene;gene=sbmC;gene_biotype=protein_coding;locus_tag=AD39_RS12900;old_locus_tag=AD39_2297 NZ_JJLH01000028.1 Protein Homology CDS 299268 299741 . - 0 ID=cds-WP_001105415.1;Parent=gene-AD39_RS12900;Dbxref=GenBank:WP_001105415.1;Name=WP_001105415.1;gbkey=CDS;gene=sbmC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416513.1;locus_tag=AD39_RS12900;product=DNA gyrase inhibitor SbmC;protein_id=WP_001105415.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 299860 301026 . - . ID=gene-AD39_RS12895;Name=dacD;gbkey=Gene;gene=dacD;gene_biotype=protein_coding;locus_tag=AD39_RS12895;old_locus_tag=AD39_2298 NZ_JJLH01000028.1 Protein Homology CDS 299860 301026 . - 0 ID=cds-WP_001296209.1;Parent=gene-AD39_RS12895;Dbxref=GenBank:WP_001296209.1;Name=WP_001296209.1;Ontology_term=GO:0006508,GO:0009002;gbkey=CDS;gene=dacD;go_function=serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416514.4;locus_tag=AD39_RS12895;product=serine-type D-Ala-D-Ala carboxypeptidase DacD;protein_id=WP_001296209.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 301235 302662 . + . ID=gene-AD39_RS12890;Name=sbcB;gbkey=Gene;gene=sbcB;gene_biotype=protein_coding;locus_tag=AD39_RS12890;old_locus_tag=AD39_2299 NZ_JJLH01000028.1 Protein Homology CDS 301235 302662 . + 0 ID=cds-WP_077527041.1;Parent=gene-AD39_RS12890;Dbxref=GenBank:WP_077527041.1;Name=WP_077527041.1;Ontology_term=GO:0006281,GO:0000175,GO:0003676,GO:0008310;gbkey=CDS;gene=sbcB;go_function=3'-5'-RNA exonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA,single-stranded DNA 3'-5' DNA exonuclease activity|0008310||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416515.1;locus_tag=AD39_RS12890;product=exodeoxyribonuclease I;protein_id=WP_077527041.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 302705 302932 . - . ID=gene-AD39_RS12885;Name=tsuB;gbkey=Gene;gene=tsuB;gene_biotype=protein_coding;locus_tag=AD39_RS12885;old_locus_tag=AD39_2300 NZ_JJLH01000028.1 Protein Homology CDS 302705 302932 . - 0 ID=cds-WP_000985273.1;Parent=gene-AD39_RS12885;Dbxref=GenBank:WP_000985273.1;Name=WP_000985273.1;gbkey=CDS;gene=tsuB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310841.1;locus_tag=AD39_RS12885;product=thiosulfate utilization sulfurtransferase TsuB/YeeD;protein_id=WP_000985273.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 302946 304004 . - . ID=gene-AD39_RS12880;Name=tsuA;gbkey=Gene;gene=tsuA;gene_biotype=protein_coding;locus_tag=AD39_RS12880;old_locus_tag=AD39_2301 NZ_JJLH01000028.1 Protein Homology CDS 302946 304004 . - 0 ID=cds-WP_032283326.1;Parent=gene-AD39_RS12880;Dbxref=GenBank:WP_032283326.1;Name=WP_032283326.1;gbkey=CDS;gene=tsuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416517.1;locus_tag=AD39_RS12880;product=thiosulfate utilization transporter TsuA/YeeE;protein_id=WP_032283326.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 304183 305541 . - . ID=gene-AD39_RS12875;Name=plaP;gbkey=Gene;gene=plaP;gene_biotype=protein_coding;locus_tag=AD39_RS12875;old_locus_tag=AD39_2302 NZ_JJLH01000028.1 Protein Homology CDS 304183 305541 . - 0 ID=cds-WP_024198437.1;Parent=gene-AD39_RS12875;Dbxref=GenBank:WP_024198437.1;Name=WP_024198437.1;gbkey=CDS;gene=plaP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416518.2;locus_tag=AD39_RS12875;product=putrescine/proton symporter PlaP;protein_id=WP_024198437.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 305531 305593 . - . ID=gene-AD39_RS29040;Name=yoeI;gbkey=Gene;gene=yoeI;gene_biotype=protein_coding;locus_tag=AD39_RS29040 NZ_JJLH01000028.1 Protein Homology CDS 305531 305593 . - 0 ID=cds-WP_010723108.1;Parent=gene-AD39_RS29040;Dbxref=GenBank:WP_010723108.1;Name=WP_010723108.1;gbkey=CDS;gene=yoeI;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791246.1;locus_tag=AD39_RS29040;product=membrane protein YoeI;protein_id=WP_010723108.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 305808 306737 . - . ID=gene-AD39_RS12870;Name=yeeY;gbkey=Gene;gene=yeeY;gene_biotype=protein_coding;locus_tag=AD39_RS12870;old_locus_tag=AD39_2303 NZ_JJLH01000028.1 Protein Homology CDS 305808 306737 . - 0 ID=cds-WP_032283327.1;Parent=gene-AD39_RS12870;Dbxref=GenBank:WP_032283327.1;Name=WP_032283327.1;gbkey=CDS;gene=yeeY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416519.4;locus_tag=AD39_RS12870;product=LysR substrate-binding domain-containing protein;protein_id=WP_032283327.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 306783 307607 . - . ID=gene-AD39_RS12865;Name=yeeZ;gbkey=Gene;gene=yeeZ;gene_biotype=protein_coding;locus_tag=AD39_RS12865;old_locus_tag=AD39_2304 NZ_JJLH01000028.1 Protein Homology CDS 306783 307607 . - 0 ID=cds-WP_000754737.1;Parent=gene-AD39_RS12865;Dbxref=GenBank:WP_000754737.1;Name=WP_000754737.1;Ontology_term=GO:0016491,GO:0051287;gbkey=CDS;gene=yeeZ;go_function=oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310845.1;locus_tag=AD39_RS12865;product=SDR family oxidoreductase;protein_id=WP_000754737.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 307690 307944 . - . ID=gene-AD39_RS12860;Name=yoeB;gbkey=Gene;gene=yoeB;gene_biotype=protein_coding;locus_tag=AD39_RS12860;old_locus_tag=AD39_2305 NZ_JJLH01000028.1 Protein Homology CDS 307690 307944 . - 0 ID=cds-WP_000767829.1;Parent=gene-AD39_RS12860;Dbxref=GenBank:WP_000767829.1;Name=WP_000767829.1;gbkey=CDS;gene=yoeB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707909.1;locus_tag=AD39_RS12860;product=type II toxin-antitoxin system mRNA interferase toxin YoeB;protein_id=WP_000767829.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 307941 308192 . - . ID=gene-AD39_RS12855;Name=yefM;gbkey=Gene;gene=yefM;gene_biotype=protein_coding;locus_tag=AD39_RS12855;old_locus_tag=AD39_2306 NZ_JJLH01000028.1 Protein Homology CDS 307941 308192 . - 0 ID=cds-WP_001259255.1;Parent=gene-AD39_RS12855;Dbxref=GenBank:WP_001259255.1;Name=WP_001259255.1;gbkey=CDS;gene=yefM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416521.2;locus_tag=AD39_RS12855;product=YoeB-YefM toxin-antitoxin system antitoxin YefM;protein_id=WP_001259255.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 308475 308525 . + . ID=gene-AD39_RS27050;Name=hisL;gbkey=Gene;gene=hisL;gene_biotype=protein_coding;locus_tag=AD39_RS27050 NZ_JJLH01000028.1 Protein Homology CDS 308475 308525 . + 0 ID=cds-WP_001364200.1;Parent=gene-AD39_RS27050;Dbxref=GenBank:WP_001364200.1;Name=WP_001364200.1;Ontology_term=GO:0000105;gbkey=CDS;gene=hisL;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416522.1;locus_tag=AD39_RS27050;product=his operon leader peptide;protein_id=WP_001364200.1;transl_table=11 NZ_JJLH01000028.1 cmsearch sequence_feature 308501 308624 . + . ID=id-NZ_JJLH01000028.1:308501..308624;Dbxref=RFAM:RF00514;Note=His leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5 NZ_JJLH01000028.1 RefSeq gene 308671 309570 . + . ID=gene-AD39_RS12850;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=AD39_RS12850;old_locus_tag=AD39_2307 NZ_JJLH01000028.1 Protein Homology CDS 308671 309570 . + 0 ID=cds-WP_000131782.1;Parent=gene-AD39_RS12850;Dbxref=GenBank:WP_000131782.1;Name=WP_000131782.1;Ontology_term=GO:0000105,GO:0003879,GO:0005737;gbkey=CDS;gene=hisG;go_component=cytoplasm|0005737||IEA;go_function=ATP phosphoribosyltransferase activity|0003879||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128078.1;locus_tag=AD39_RS12850;product=ATP phosphoribosyltransferase;protein_id=WP_000131782.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 309576 310880 . + . ID=gene-AD39_RS12845;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=AD39_RS12845;old_locus_tag=AD39_2308 NZ_JJLH01000028.1 Protein Homology CDS 309576 310880 . + 0 ID=cds-WP_032283328.1;Parent=gene-AD39_RS12845;Dbxref=GenBank:WP_032283328.1;Name=WP_032283328.1;Ontology_term=GO:0000105,GO:0004399,GO:0046872,GO:0051287;gbkey=CDS;gene=hisD;go_function=histidinol dehydrogenase activity|0004399||IEA,metal ion binding|0046872||IEA,NAD binding|0051287||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310848.1;locus_tag=AD39_RS12845;product=histidinol dehydrogenase;protein_id=WP_032283328.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 310877 311947 . + . ID=gene-AD39_RS12840;Name=hisC;gbkey=Gene;gene=hisC;gene_biotype=protein_coding;locus_tag=AD39_RS12840;old_locus_tag=AD39_2309 NZ_JJLH01000028.1 Protein Homology CDS 310877 311947 . + 0 ID=cds-WP_000108941.1;Parent=gene-AD39_RS12840;Dbxref=GenBank:WP_000108941.1;Name=WP_000108941.1;Ontology_term=GO:0000105,GO:0004400;gbkey=CDS;gene=hisC;go_function=histidinol-phosphate transaminase activity|0004400||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416525.1;locus_tag=AD39_RS12840;product=histidinol-phosphate transaminase;protein_id=WP_000108941.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 311947 313014 . + . ID=gene-AD39_RS12835;Name=hisB;gbkey=Gene;gene=hisB;gene_biotype=protein_coding;locus_tag=AD39_RS12835;old_locus_tag=AD39_2310 NZ_JJLH01000028.1 Protein Homology CDS 311947 313014 . + 0 ID=cds-WP_032283329.1;Parent=gene-AD39_RS12835;Dbxref=GenBank:WP_032283329.1;Name=WP_032283329.1;Ontology_term=GO:0000105,GO:0004401,GO:0004424;gbkey=CDS;gene=hisB;go_function=histidinol-phosphatase activity|0004401||IEA,imidazoleglycerol-phosphate dehydratase activity|0004424||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707917.2;locus_tag=AD39_RS12835;product=bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB;protein_id=WP_032283329.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 313014 313604 . + . ID=gene-AD39_RS12830;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=AD39_RS12830;old_locus_tag=AD39_2311 NZ_JJLH01000028.1 Protein Homology CDS 313014 313604 . + 0 ID=cds-WP_001103560.1;Parent=gene-AD39_RS12830;Dbxref=GenBank:WP_001103560.1;Name=WP_001103560.1;Ontology_term=GO:0000105,GO:0000107;gbkey=CDS;gene=hisH;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128083.1;locus_tag=AD39_RS12830;product=imidazole glycerol phosphate synthase subunit HisH;protein_id=WP_001103560.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 313604 314341 . + . ID=gene-AD39_RS12825;Name=hisA;gbkey=Gene;gene=hisA;gene_biotype=protein_coding;locus_tag=AD39_RS12825;old_locus_tag=AD39_2312 NZ_JJLH01000028.1 Protein Homology CDS 313604 314341 . + 0 ID=cds-WP_000586445.1;Parent=gene-AD39_RS12825;Dbxref=GenBank:WP_000586445.1;Name=WP_000586445.1;Ontology_term=GO:0000105,GO:0003949;gbkey=CDS;gene=hisA;go_function=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity|0003949||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416528.2;locus_tag=AD39_RS12825;product=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase;protein_id=WP_000586445.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 314323 315099 . + . ID=gene-AD39_RS12820;Name=hisF;gbkey=Gene;gene=hisF;gene_biotype=protein_coding;locus_tag=AD39_RS12820;old_locus_tag=AD39_2313 NZ_JJLH01000028.1 Protein Homology CDS 314323 315099 . + 0 ID=cds-WP_000880193.1;Parent=gene-AD39_RS12820;Dbxref=GenBank:WP_000880193.1;Name=WP_000880193.1;Ontology_term=GO:0000105,GO:0000107;gbkey=CDS;gene=hisF;go_function=imidazoleglycerol-phosphate synthase activity|0000107||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310853.1;locus_tag=AD39_RS12820;product=imidazole glycerol phosphate synthase subunit HisF;protein_id=WP_000880193.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 315093 315704 . + . ID=gene-AD39_RS12815;Name=hisIE;gbkey=Gene;gene=hisIE;gene_biotype=protein_coding;locus_tag=AD39_RS12815;old_locus_tag=AD39_2314 NZ_JJLH01000028.1 Protein Homology CDS 315093 315704 . + 0 ID=cds-WP_000954893.1;Parent=gene-AD39_RS12815;Dbxref=GenBank:WP_000954893.1;Name=WP_000954893.1;Ontology_term=GO:0000105,GO:0004635,GO:0004636;gbkey=CDS;gene=hisIE;go_function=phosphoribosyl-AMP cyclohydrolase activity|0004635||IEA,phosphoribosyl-ATP diphosphatase activity|0004636||IEA;go_process=L-histidine biosynthetic process|0000105||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310854.1;locus_tag=AD39_RS12815;product=bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE;protein_id=WP_000954893.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 315801 316778 . - . ID=gene-AD39_RS12810;Name=wzzB;gbkey=Gene;gene=wzzB;gene_biotype=protein_coding;locus_tag=AD39_RS12810;old_locus_tag=AD39_2315 NZ_JJLH01000028.1 Protein Homology CDS 315801 316778 . - 0 ID=cds-WP_032141874.1;Parent=gene-AD39_RS12810;Dbxref=GenBank:WP_032141874.1;Name=WP_032141874.1;Ontology_term=GO:0009103;gbkey=CDS;gene=wzzB;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310855.3;locus_tag=AD39_RS12810;product=LPS O-antigen chain length determinant protein WzzB;protein_id=WP_032141874.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 316925 318091 . - . ID=gene-AD39_RS12805;Name=ugd;gbkey=Gene;gene=ugd;gene_biotype=protein_coding;locus_tag=AD39_RS12805;old_locus_tag=AD39_2316 NZ_JJLH01000028.1 Protein Homology CDS 316925 318091 . - 0 ID=cds-WP_000704798.1;Parent=gene-AD39_RS12805;Dbxref=GenBank:WP_000704798.1;Name=WP_000704798.1;Ontology_term=GO:0000271,GO:0003979;gbkey=CDS;gene=ugd;go_function=UDP-glucose 6-dehydrogenase activity|0003979||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005227854.1;locus_tag=AD39_RS12805;product=UDP-glucose 6-dehydrogenase;protein_id=WP_000704798.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 318340 319746 . - . ID=gene-AD39_RS12800;Name=gndA;gbkey=Gene;gene=gndA;gene_biotype=protein_coding;locus_tag=AD39_RS12800;old_locus_tag=AD39_2317 NZ_JJLH01000028.1 Protein Homology CDS 318340 319746 . - 0 ID=cds-WP_000043458.1;Parent=gene-AD39_RS12800;Dbxref=GenBank:WP_000043458.1;Name=WP_000043458.1;Ontology_term=GO:0006098,GO:0004616,GO:0050661;gbkey=CDS;gene=gndA;go_function=phosphogluconate dehydrogenase (decarboxylating) activity|0004616||IEA,NADP binding|0050661||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310857.1;locus_tag=AD39_RS12800;product=NADP-dependent phosphogluconate dehydrogenase;protein_id=WP_000043458.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 319881 320630 . - . ID=gene-AD39_RS12795;Name=AD39_RS12795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12795;old_locus_tag=AD39_2318 NZ_JJLH01000028.1 Protein Homology CDS 319881 320630 . - 0 ID=cds-WP_032283332.1;Parent=gene-AD39_RS12795;Dbxref=GenBank:WP_032283332.1;Name=WP_032283332.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007888913.1;locus_tag=AD39_RS12795;product=glycosyltransferase family 2 protein;protein_id=WP_032283332.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 320643 321428 . - . ID=gene-AD39_RS12790;Name=AD39_RS12790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12790;old_locus_tag=AD39_2319 NZ_JJLH01000028.1 Protein Homology CDS 320643 321428 . - 0 ID=cds-WP_032283333.1;Parent=gene-AD39_RS12790;Dbxref=GenBank:WP_032283333.1;Name=WP_032283333.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012745.6;locus_tag=AD39_RS12790;product=glycosyltransferase;protein_id=WP_032283333.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 321361 322587 . - . ID=gene-AD39_RS29045;Name=wzy;gbkey=Gene;gene=wzy;gene_biotype=protein_coding;locus_tag=AD39_RS29045;old_locus_tag=AD39_2320 NZ_JJLH01000028.1 Protein Homology CDS 321361 322587 . - 0 ID=cds-WP_148725048.1;Parent=gene-AD39_RS29045;Dbxref=GenBank:WP_148725048.1;Name=WP_148725048.1;gbkey=CDS;gene=wzy;inference=COORDINATES: similar to AA sequence:RefSeq:WP_134871541.1;locus_tag=AD39_RS29045;product=O182 family O-antigen polymerase;protein_id=WP_148725048.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 322584 323738 . - . ID=gene-AD39_RS12785;Name=AD39_RS12785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12785;old_locus_tag=AD39_2321 NZ_JJLH01000028.1 Protein Homology CDS 322584 323738 . - 0 ID=cds-WP_032283334.1;Parent=gene-AD39_RS12785;Dbxref=GenBank:WP_032283334.1;Name=WP_032283334.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: protein motif:HMM:NF012745.6;locus_tag=AD39_RS12785;product=glycosyltransferase family 2 protein;protein_id=WP_032283334.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 323799 324809 . - . ID=gene-AD39_RS12780;Name=AD39_RS12780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12780;old_locus_tag=AD39_2322 NZ_JJLH01000028.1 Protein Homology CDS 323799 324809 . - 0 ID=cds-WP_032283335.1;Parent=gene-AD39_RS12780;Dbxref=GenBank:WP_032283335.1;Name=WP_032283335.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001567696.1;locus_tag=AD39_RS12780;product=polysaccharide biosynthesis protein;protein_id=WP_032283335.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 324863 326206 . - . ID=gene-AD39_RS12775;Name=wzx;gbkey=Gene;gene=wzx;gene_biotype=protein_coding;locus_tag=AD39_RS12775;old_locus_tag=AD39_2323 NZ_JJLH01000028.1 Protein Homology CDS 324863 326206 . - 0 ID=cds-WP_032283336.1;Parent=gene-AD39_RS12775;Dbxref=GenBank:WP_032283336.1;Name=WP_032283336.1;gbkey=CDS;gene=wzx;inference=COORDINATES: similar to AA sequence:RefSeq:WP_033815921.1;locus_tag=AD39_RS12775;product=O182 family O-antigen flippase;protein_id=WP_032283336.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 326214 327365 . - . ID=gene-AD39_RS12770;Name=AD39_RS12770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12770;old_locus_tag=AD39_2324 NZ_JJLH01000028.1 Protein Homology CDS 326214 327365 . - 0 ID=cds-WP_032283337.1;Parent=gene-AD39_RS12770;Dbxref=GenBank:WP_032283337.1;Name=WP_032283337.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013227.6;locus_tag=AD39_RS12770;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_032283337.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 327367 328464 . - . ID=gene-AD39_RS12765;Name=AD39_RS12765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12765;old_locus_tag=AD39_2325 NZ_JJLH01000028.1 Protein Homology CDS 327367 328464 . - 0 ID=cds-WP_032283339.1;Parent=gene-AD39_RS12765;Dbxref=GenBank:WP_032283339.1;Name=WP_032283339.1;Ontology_term=GO:0008483;gbkey=CDS;go_function=transaminase activity|0008483||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001567699.1;locus_tag=AD39_RS12765;product=DegT/DnrJ/EryC1/StrS family aminotransferase;protein_id=WP_032283339.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 328467 329276 . - . ID=gene-AD39_RS12760;Name=AD39_RS12760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12760;old_locus_tag=AD39_2326 NZ_JJLH01000028.1 Protein Homology CDS 328467 329276 . - 0 ID=cds-WP_157897004.1;Parent=gene-AD39_RS12760;Dbxref=GenBank:WP_157897004.1;Name=WP_157897004.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF012792.6;locus_tag=AD39_RS12760;product=GNAT family N-acetyltransferase;protein_id=WP_157897004.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 329608 330501 . - . ID=gene-AD39_RS12755;Name=galF;gbkey=Gene;gene=galF;gene_biotype=protein_coding;locus_tag=AD39_RS12755;old_locus_tag=AD39_2327 NZ_JJLH01000028.1 Protein Homology CDS 329608 330501 . - 0 ID=cds-WP_000183063.1;Parent=gene-AD39_RS12755;Dbxref=GenBank:WP_000183063.1;Name=WP_000183063.1;gbkey=CDS;gene=galF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310873.1;locus_tag=AD39_RS12755;product=UTP--glucose-1-phosphate uridylyltransferase GalF;protein_id=WP_000183063.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 330676 332070 . - . ID=gene-AD39_RS12750;Name=wcaM;gbkey=Gene;gene=wcaM;gene_biotype=protein_coding;locus_tag=AD39_RS12750;old_locus_tag=AD39_2328 NZ_JJLH01000028.1 Protein Homology CDS 330676 332070 . - 0 ID=cds-WP_001392326.1;Parent=gene-AD39_RS12750;Dbxref=GenBank:WP_001392326.1;Name=WP_001392326.1;gbkey=CDS;gene=wcaM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310875.1;locus_tag=AD39_RS12750;product=colanic acid biosynthesis protein WcaM;protein_id=WP_001392326.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 332081 333301 . - . ID=gene-AD39_RS12745;Name=wcaL;gbkey=Gene;gene=wcaL;gene_biotype=protein_coding;locus_tag=AD39_RS12745;old_locus_tag=AD39_2329 NZ_JJLH01000028.1 Protein Homology CDS 332081 333301 . - 0 ID=cds-WP_021562300.1;Parent=gene-AD39_RS12745;Dbxref=GenBank:WP_021562300.1;Name=WP_021562300.1;Ontology_term=GO:0016757;gbkey=CDS;gene=wcaL;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416548.1;locus_tag=AD39_RS12745;product=colanic acid biosynthesis glycosyltransferase WcaL;protein_id=WP_021562300.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 333298 334578 . - . ID=gene-AD39_RS12740;Name=wcaK;gbkey=Gene;gene=wcaK;gene_biotype=protein_coding;locus_tag=AD39_RS12740;old_locus_tag=AD39_2330 NZ_JJLH01000028.1 Protein Homology CDS 333298 334578 . - 0 ID=cds-WP_023155641.1;Parent=gene-AD39_RS12740;Dbxref=GenBank:WP_023155641.1;Name=WP_023155641.1;gbkey=CDS;gene=wcaK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416549.1;locus_tag=AD39_RS12740;product=colanic acid biosynthesis pyruvyl transferase WcaK;protein_id=WP_023155641.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 335432 336910 . - . ID=gene-AD39_RS12735;Name=wzxC;gbkey=Gene;gene=wzxC;gene_biotype=protein_coding;locus_tag=AD39_RS12735;old_locus_tag=AD39_2331 NZ_JJLH01000028.1 Protein Homology CDS 335432 336910 . - 0 ID=cds-WP_000058493.1;Parent=gene-AD39_RS12735;Dbxref=GenBank:WP_000058493.1;Name=WP_000058493.1;gbkey=CDS;gene=wzxC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310878.1;locus_tag=AD39_RS12735;product=colanic acid undecaprenyl disphosphate flippase WzxC;protein_id=WP_000058493.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 336912 338306 . - . ID=gene-AD39_RS12730;Name=wcaJ;gbkey=Gene;gene=wcaJ;gene_biotype=protein_coding;locus_tag=AD39_RS12730;old_locus_tag=AD39_2332 NZ_JJLH01000028.1 Protein Homology CDS 336912 338306 . - 0 ID=cds-WP_000183130.1;Parent=gene-AD39_RS12730;Dbxref=GenBank:WP_000183130.1;Name=WP_000183130.1;gbkey=CDS;gene=wcaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310879.1;locus_tag=AD39_RS12730;product=undecaprenyl-phosphate glucose phosphotransferase;protein_id=WP_000183130.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 338442 339812 . - . ID=gene-AD39_RS12725;Name=cpsG;gbkey=Gene;gene=cpsG;gene_biotype=protein_coding;gene_synonym=manB;locus_tag=AD39_RS12725;old_locus_tag=AD39_2333 NZ_JJLH01000028.1 Protein Homology CDS 338442 339812 . - 0 ID=cds-WP_032286091.1;Parent=gene-AD39_RS12725;Dbxref=GenBank:WP_032286091.1;Name=WP_032286091.1;gbkey=CDS;gene=cpsG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416552.1;locus_tag=AD39_RS12725;product=colanic acid biosynthesis phosphomannomutase CpsG;protein_id=WP_032286091.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 340093 341529 . - . ID=gene-AD39_RS12720;Name=cpsB;gbkey=Gene;gene=cpsB;gene_biotype=protein_coding;locus_tag=AD39_RS12720;old_locus_tag=AD39_2334 NZ_JJLH01000028.1 Protein Homology CDS 340093 341529 . - 0 ID=cds-WP_000079263.1;Parent=gene-AD39_RS12720;Dbxref=GenBank:WP_000079263.1;Name=WP_000079263.1;Ontology_term=GO:0000271,GO:0016779;gbkey=CDS;gene=cpsB;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310881.1;locus_tag=AD39_RS12720;product=mannose-1-phosphate guanyltransferase;protein_id=WP_000079263.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 341532 342755 . - . ID=gene-AD39_RS12715;Name=wcaI;gbkey=Gene;gene=wcaI;gene_biotype=protein_coding;locus_tag=AD39_RS12715;old_locus_tag=AD39_2335 NZ_JJLH01000028.1 Protein Homology CDS 341532 342755 . - 0 ID=cds-WP_000699743.1;Parent=gene-AD39_RS12715;Dbxref=GenBank:WP_000699743.1;Name=WP_000699743.1;gbkey=CDS;gene=wcaI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310882.1;locus_tag=AD39_RS12715;product=colanic acid biosynthesis fucosyltransferase WcaI;protein_id=WP_000699743.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 342752 343231 . - . ID=gene-AD39_RS12710;Name=gmm;gbkey=Gene;gene=gmm;gene_biotype=protein_coding;gene_synonym=nudD,wcaH,yefC;locus_tag=AD39_RS12710;old_locus_tag=AD39_2336 NZ_JJLH01000028.1 Protein Homology CDS 342752 343231 . - 0 ID=cds-WP_032179528.1;Parent=gene-AD39_RS12710;Dbxref=GenBank:WP_032179528.1;Name=WP_032179528.1;gbkey=CDS;gene=gmm;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416555.2;locus_tag=AD39_RS12710;product=GDP-mannose mannosyl hydrolase;protein_id=WP_032179528.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 343234 344199 . - . ID=gene-AD39_RS12705;Name=fcl;gbkey=Gene;gene=fcl;gene_biotype=protein_coding;gene_synonym=wcaG,yefB;locus_tag=AD39_RS12705;old_locus_tag=AD39_2337 NZ_JJLH01000028.1 Protein Homology CDS 343234 344199 . - 0 ID=cds-WP_000089922.1;Parent=gene-AD39_RS12705;Dbxref=GenBank:WP_000089922.1;Name=WP_000089922.1;Ontology_term=GO:0042351,GO:0016853,GO:0050577;gbkey=CDS;gene=fcl;go_function=isomerase activity|0016853||IEA,GDP-L-fucose synthase activity|0050577||IEA;go_process='de novo' GDP-L-fucose biosynthetic process|0042351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310884.1;locus_tag=AD39_RS12705;product=GDP-L-fucose synthase;protein_id=WP_000089922.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 344202 345323 . - . ID=gene-AD39_RS12700;Name=gmd;gbkey=Gene;gene=gmd;gene_biotype=protein_coding;locus_tag=AD39_RS12700;old_locus_tag=AD39_2338 NZ_JJLH01000028.1 Protein Homology CDS 344202 345323 . - 0 ID=cds-WP_000048190.1;Parent=gene-AD39_RS12700;Dbxref=GenBank:WP_000048190.1;Name=WP_000048190.1;Ontology_term=GO:0000271,GO:0019673,GO:0008446;gbkey=CDS;gene=gmd;go_function=GDP-mannose 4%2C6-dehydratase activity|0008446||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA,GDP-mannose metabolic process|0019673||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005128297.1;locus_tag=AD39_RS12700;product=GDP-mannose 4%2C6-dehydratase;protein_id=WP_000048190.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 345349 345897 . - . ID=gene-AD39_RS12695;Name=wcaF;gbkey=Gene;gene=wcaF;gene_biotype=protein_coding;locus_tag=AD39_RS12695;old_locus_tag=AD39_2339 NZ_JJLH01000028.1 Protein Homology CDS 345349 345897 . - 0 ID=cds-WP_001153559.1;Parent=gene-AD39_RS12695;Dbxref=GenBank:WP_001153559.1;Name=WP_001153559.1;gbkey=CDS;gene=wcaF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416558.1;locus_tag=AD39_RS12695;product=colanic acid biosynthesis acetyltransferase WcaF;protein_id=WP_001153559.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 345913 346659 . - . ID=gene-AD39_RS12690;Name=wcaE;gbkey=Gene;gene=wcaE;gene_biotype=protein_coding;locus_tag=AD39_RS12690;old_locus_tag=AD39_2340 NZ_JJLH01000028.1 Protein Homology CDS 345913 346659 . - 0 ID=cds-WP_000927076.1;Parent=gene-AD39_RS12690;Dbxref=GenBank:WP_000927076.1;Name=WP_000927076.1;gbkey=CDS;gene=wcaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310887.1;locus_tag=AD39_RS12690;product=colanic acid biosynthesis glycosyltransferase WcaE;protein_id=WP_000927076.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 346670 347887 . - . ID=gene-AD39_RS12685;Name=wcaD;gbkey=Gene;gene=wcaD;gene_biotype=protein_coding;locus_tag=AD39_RS12685;old_locus_tag=AD39_2341 NZ_JJLH01000028.1 Protein Homology CDS 346670 347887 . - 0 ID=cds-WP_000107845.1;Parent=gene-AD39_RS12685;Dbxref=GenBank:WP_000107845.1;Name=WP_000107845.1;gbkey=CDS;gene=wcaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416560.1;locus_tag=AD39_RS12685;product=colanic acid polymerase WcaD;protein_id=WP_000107845.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 347862 349079 . - . ID=gene-AD39_RS12680;Name=wcaC;gbkey=Gene;gene=wcaC;gene_biotype=protein_coding;locus_tag=AD39_RS12680;old_locus_tag=AD39_2342 NZ_JJLH01000028.1 Protein Homology CDS 347862 349079 . - 0 ID=cds-WP_001023951.1;Parent=gene-AD39_RS12680;Dbxref=GenBank:WP_001023951.1;Name=WP_001023951.1;Ontology_term=GO:0016757;gbkey=CDS;gene=wcaC;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310889.1;locus_tag=AD39_RS12680;product=colanic acid biosynthesis glycosyltransferase WcaC;protein_id=WP_001023951.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 349076 349564 . - . ID=gene-AD39_RS12675;Name=wcaB;gbkey=Gene;gene=wcaB;gene_biotype=protein_coding;locus_tag=AD39_RS12675;old_locus_tag=AD39_2343 NZ_JJLH01000028.1 Protein Homology CDS 349076 349564 . - 0 ID=cds-WP_000888740.1;Parent=gene-AD39_RS12675;Dbxref=GenBank:WP_000888740.1;Name=WP_000888740.1;gbkey=CDS;gene=wcaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310890.1;locus_tag=AD39_RS12675;product=colanic acid biosynthesis acetyltransferase WcaB;protein_id=WP_000888740.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 349567 350406 . - . ID=gene-AD39_RS12670;Name=wcaA;gbkey=Gene;gene=wcaA;gene_biotype=protein_coding;locus_tag=AD39_RS12670;old_locus_tag=AD39_2344 NZ_JJLH01000028.1 Protein Homology CDS 349567 350406 . - 0 ID=cds-WP_000654503.1;Parent=gene-AD39_RS12670;Dbxref=GenBank:WP_000654503.1;Name=WP_000654503.1;gbkey=CDS;gene=wcaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310891.1;locus_tag=AD39_RS12670;product=colanic acid biosynthesis glycosyltransferase WcaA;protein_id=WP_000654503.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 350584 352746 . - . ID=gene-AD39_RS12665;Name=wzc;gbkey=Gene;gene=wzc;gene_biotype=protein_coding;locus_tag=AD39_RS12665;old_locus_tag=AD39_2345 NZ_JJLH01000028.1 Protein Homology CDS 350584 352746 . - 0 ID=cds-WP_000137189.1;Parent=gene-AD39_RS12665;Dbxref=GenBank:WP_000137189.1;Name=WP_000137189.1;Ontology_term=GO:0009103,GO:0016020;gbkey=CDS;gene=wzc;go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416564.4;locus_tag=AD39_RS12665;product=tyrosine-protein kinase Wzc;protein_id=WP_000137189.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 352749 353192 . - . ID=gene-AD39_RS12660;Name=wzb;gbkey=Gene;gene=wzb;gene_biotype=protein_coding;locus_tag=AD39_RS12660;old_locus_tag=AD39_2346 NZ_JJLH01000028.1 Protein Homology CDS 352749 353192 . - 0 ID=cds-WP_000482901.1;Parent=gene-AD39_RS12660;Dbxref=GenBank:WP_000482901.1;Name=WP_000482901.1;gbkey=CDS;gene=wzb;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310893.1;locus_tag=AD39_RS12660;product=low molecular weight protein-tyrosine-phosphatase Wzb;protein_id=WP_000482901.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 353198 354337 . - . ID=gene-AD39_RS12655;Name=wza;gbkey=Gene;gene=wza;gene_biotype=protein_coding;locus_tag=AD39_RS12655;old_locus_tag=AD39_2347 NZ_JJLH01000028.1 Protein Homology CDS 353198 354337 . - 0 ID=cds-WP_000978094.1;Parent=gene-AD39_RS12655;Dbxref=GenBank:WP_000978094.1;Name=WP_000978094.1;gbkey=CDS;gene=wza;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310894.1;locus_tag=AD39_RS12655;product=polysaccharide export protein Wza;protein_id=WP_000978094.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 354646 354795 . + . ID=gene-AD39_RS29430;Name=AD39_RS29430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29430 NZ_JJLH01000028.1 GeneMarkS-2+ CDS 354646 354795 . + 0 ID=cds-WP_162829205.1;Parent=gene-AD39_RS29430;Dbxref=GenBank:WP_162829205.1;Name=WP_162829205.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS29430;product=hypothetical protein;protein_id=WP_162829205.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 354996 356579 . + . ID=gene-AD39_RS12650;Name=yegH;gbkey=Gene;gene=yegH;gene_biotype=protein_coding;locus_tag=AD39_RS12650;old_locus_tag=AD39_2348 NZ_JJLH01000028.1 Protein Homology CDS 354996 356579 . + 0 ID=cds-WP_001296218.1;Parent=gene-AD39_RS12650;Dbxref=GenBank:WP_001296218.1;Name=WP_001296218.1;Ontology_term=GO:0005886;gbkey=CDS;gene=yegH;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310895.2;locus_tag=AD39_RS12650;product=TerC family protein;protein_id=WP_001296218.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 356853 358706 . - . ID=gene-AD39_RS12645;Name=asmA;gbkey=Gene;gene=asmA;gene_biotype=protein_coding;locus_tag=AD39_RS12645;old_locus_tag=AD39_2349 NZ_JJLH01000028.1 Protein Homology CDS 356853 358706 . - 0 ID=cds-WP_001252331.1;Parent=gene-AD39_RS12645;Dbxref=GenBank:WP_001252331.1;Name=WP_001252331.1;gbkey=CDS;gene=asmA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416568.1;locus_tag=AD39_RS12645;product=outer membrane assembly protein AsmA;protein_id=WP_001252331.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 358728 359309 . - . ID=gene-AD39_RS12640;Name=dcd;gbkey=Gene;gene=dcd;gene_biotype=protein_coding;locus_tag=AD39_RS12640;old_locus_tag=AD39_2350 NZ_JJLH01000028.1 Protein Homology CDS 358728 359309 . - 0 ID=cds-WP_001234767.1;Parent=gene-AD39_RS12640;Dbxref=GenBank:WP_001234767.1;Name=WP_001234767.1;Ontology_term=GO:0006229,GO:0008829;gbkey=CDS;gene=dcd;go_function=dCTP deaminase activity|0008829||IEA;go_process=dUTP biosynthetic process|0006229||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004942378.1;locus_tag=AD39_RS12640;product=dCTP deaminase;protein_id=WP_001234767.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 359401 360042 . - . ID=gene-AD39_RS12635;Name=udk;gbkey=Gene;gene=udk;gene_biotype=protein_coding;locus_tag=AD39_RS12635;old_locus_tag=AD39_2351 NZ_JJLH01000028.1 Protein Homology CDS 359401 360042 . - 0 ID=cds-WP_001295424.1;Parent=gene-AD39_RS12635;Dbxref=GenBank:WP_001295424.1;Name=WP_001295424.1;Ontology_term=GO:0004849;gbkey=CDS;gene=udk;go_function=uridine kinase activity|0004849||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707960.1;locus_tag=AD39_RS12635;product=uridine kinase;protein_id=WP_001295424.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 360360 363677 . + . ID=gene-AD39_RS12630;Name=dgcE;gbkey=Gene;gene=dgcE;gene_biotype=protein_coding;locus_tag=AD39_RS12630;old_locus_tag=AD39_2352 NZ_JJLH01000028.1 Protein Homology CDS 360360 363677 . + 0 ID=cds-WP_023155487.1;Parent=gene-AD39_RS12630;Dbxref=GenBank:WP_023155487.1;Name=WP_023155487.1;Ontology_term=GO:0005515;gbkey=CDS;gene=dgcE;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416571.1;locus_tag=AD39_RS12630;product=diguanylate cyclase;protein_id=WP_023155487.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 363716 364573 . - . ID=gene-AD39_RS12625;Name=alkA;gbkey=Gene;gene=alkA;gene_biotype=protein_coding;locus_tag=AD39_RS12625;old_locus_tag=AD39_2353 NZ_JJLH01000028.1 Protein Homology CDS 363716 364573 . - 0 ID=cds-WP_023155488.1;Parent=gene-AD39_RS12625;Dbxref=GenBank:WP_023155488.1;Name=WP_023155488.1;Ontology_term=GO:0006281,GO:0003824;gbkey=CDS;gene=alkA;go_function=catalytic activity|0003824||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000288352.1;locus_tag=AD39_RS12625;product=DNA-3-methyladenine glycosylase 2;protein_id=WP_023155488.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 364707 366059 . + . ID=gene-AD39_RS12620;Name=yegD;gbkey=Gene;gene=yegD;gene_biotype=protein_coding;locus_tag=AD39_RS12620;old_locus_tag=AD39_2354 NZ_JJLH01000028.1 Protein Homology CDS 364707 366059 . + 0 ID=cds-WP_000469678.1;Parent=gene-AD39_RS12620;Dbxref=GenBank:WP_000469678.1;Name=WP_000469678.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;gene=yegD;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416573.4;locus_tag=AD39_RS12620;product=molecular chaperone;protein_id=WP_000469678.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 366071 368011 . - . ID=gene-AD39_RS12615;Name=yegI;gbkey=Gene;gene=yegI;gene_biotype=protein_coding;locus_tag=AD39_RS12615;old_locus_tag=AD39_2355 NZ_JJLH01000028.1 Protein Homology CDS 366071 368011 . - 0 ID=cds-WP_023155490.1;Parent=gene-AD39_RS12615;Dbxref=GenBank:WP_023155490.1;Name=WP_023155490.1;gbkey=CDS;gene=yegI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310906.2;locus_tag=AD39_RS12615;product=protein kinase YegI;protein_id=WP_023155490.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 368008 368769 . - . ID=gene-AD39_RS12610;Name=pphC;gbkey=Gene;gene=pphC;gene_biotype=protein_coding;locus_tag=AD39_RS12610;old_locus_tag=AD39_2356 NZ_JJLH01000028.1 Protein Homology CDS 368008 368769 . - 0 ID=cds-WP_032151777.1;Parent=gene-AD39_RS12610;Dbxref=GenBank:WP_032151777.1;Name=WP_032151777.1;Ontology_term=GO:0004722;gbkey=CDS;gene=pphC;go_function=protein serine/threonine phosphatase activity|0004722||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707964.1;locus_tag=AD39_RS12610;product=PP2C family serine/threonine-protein phosphatase;protein_id=WP_032151777.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 368766 369425 . - . ID=gene-AD39_RS12605;Name=yegL;gbkey=Gene;gene=yegL;gene_biotype=protein_coding;locus_tag=AD39_RS12605;old_locus_tag=AD39_2357 NZ_JJLH01000028.1 Protein Homology CDS 368766 369425 . - 0 ID=cds-WP_000003178.1;Parent=gene-AD39_RS12605;Dbxref=GenBank:WP_000003178.1;Name=WP_000003178.1;gbkey=CDS;gene=yegL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416577.1;locus_tag=AD39_RS12605;product=vWA domain-containing protein;protein_id=WP_000003178.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 369646 369705 . - . ID=gene-AD39_RS28470;Name=ibsA;gbkey=Gene;gene=ibsA;gene_biotype=protein_coding;locus_tag=AD39_RS28470 NZ_JJLH01000028.1 Protein Homology CDS 369646 369705 . - 0 ID=cds-WP_010723109.1;Parent=gene-AD39_RS28470;Dbxref=GenBank:WP_010723109.1;Name=WP_010723109.1;gbkey=CDS;gene=ibsA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791247.1;locus_tag=AD39_RS28470;product=type I toxin-antitoxin system toxin IbsA;protein_id=WP_010723109.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 369978 370034 . - . ID=gene-AD39_RS29050;Name=AD39_RS29050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29050 NZ_JJLH01000028.1 Protein Homology CDS 369978 370034 . - 0 ID=cds-WP_001386899.1;Parent=gene-AD39_RS29050;Dbxref=GenBank:WP_001386899.1;Name=WP_001386899.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791248.1;locus_tag=AD39_RS29050;product=type I toxin-antitoxin system Ibs family toxin;protein_id=WP_001386899.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 370306 370362 . - . ID=gene-AD39_RS29055;Name=AD39_RS29055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29055 NZ_JJLH01000028.1 Protein Homology CDS 370306 370362 . - 0 ID=cds-WP_100249772.1;Parent=gene-AD39_RS29055;Dbxref=GenBank:WP_100249772.1;Name=WP_100249772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791248.1;locus_tag=AD39_RS29055;product=type I toxin-antitoxin system Ibs family toxin;protein_id=WP_100249772.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 370634 370690 . - . ID=gene-AD39_RS29060;Name=AD39_RS29060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29060 NZ_JJLH01000028.1 Protein Homology CDS 370634 370690 . - 0 ID=cds-WP_100249772.1-2;Parent=gene-AD39_RS29060;Dbxref=GenBank:WP_100249772.1;Name=WP_100249772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791248.1;locus_tag=AD39_RS29060;product=type I toxin-antitoxin system Ibs family toxin;protein_id=WP_100249772.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 370969 372216 . + . ID=gene-AD39_RS12600;Name=mdtA;gbkey=Gene;gene=mdtA;gene_biotype=protein_coding;locus_tag=AD39_RS12600;old_locus_tag=AD39_2358 NZ_JJLH01000028.1 Protein Homology CDS 370969 372216 . + 0 ID=cds-WP_001724809.1;Parent=gene-AD39_RS12600;Dbxref=GenBank:WP_001724809.1;Name=WP_001724809.1;gbkey=CDS;gene=mdtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310909.2;locus_tag=AD39_RS12600;product=multidrug efflux RND transporter subunit MdtA;protein_id=WP_001724809.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 372216 375338 . + . ID=gene-AD39_RS12595;Name=mdtB;gbkey=Gene;gene=mdtB;gene_biotype=protein_coding;locus_tag=AD39_RS12595;old_locus_tag=AD39_2359 NZ_JJLH01000028.1 Protein Homology CDS 372216 375338 . + 0 ID=cds-WP_001520891.1;Parent=gene-AD39_RS12595;Dbxref=GenBank:WP_001520891.1;Name=WP_001520891.1;gbkey=CDS;gene=mdtB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310910.1;locus_tag=AD39_RS12595;product=multidrug efflux RND transporter permease subunit MdtB;protein_id=WP_001520891.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 375339 378416 . + . ID=gene-AD39_RS12590;Name=mdtC;gbkey=Gene;gene=mdtC;gene_biotype=protein_coding;locus_tag=AD39_RS12590;old_locus_tag=AD39_2360 NZ_JJLH01000028.1 Protein Homology CDS 375339 378416 . + 0 ID=cds-WP_001724810.1;Parent=gene-AD39_RS12590;Dbxref=GenBank:WP_001724810.1;Name=WP_001724810.1;gbkey=CDS;gene=mdtC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310911.1;locus_tag=AD39_RS12590;product=multidrug efflux RND transporter permease subunit MdtC;protein_id=WP_001724810.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 378417 379832 . + . ID=gene-AD39_RS12585;Name=mdtD;gbkey=Gene;gene=mdtD;gene_biotype=protein_coding;locus_tag=AD39_RS12585;old_locus_tag=AD39_2361 NZ_JJLH01000028.1 Protein Homology CDS 378417 379832 . + 0 ID=cds-WP_001724812.1;Parent=gene-AD39_RS12585;Dbxref=GenBank:WP_001724812.1;Name=WP_001724812.1;gbkey=CDS;gene=mdtD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310912.1;locus_tag=AD39_RS12585;product=MFS transporter;protein_id=WP_001724812.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 379829 381232 . + . ID=gene-AD39_RS12580;Name=baeS;gbkey=Gene;gene=baeS;gene_biotype=protein_coding;locus_tag=AD39_RS12580;old_locus_tag=AD39_2362 NZ_JJLH01000028.1 Protein Homology CDS 379829 381232 . + 0 ID=cds-WP_000675146.1;Parent=gene-AD39_RS12580;Dbxref=GenBank:WP_000675146.1;Name=WP_000675146.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=baeS;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310913.1;locus_tag=AD39_RS12580;product=two-component system sensor histidine kinase BaeS;protein_id=WP_000675146.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 381229 381951 . + . ID=gene-AD39_RS12575;Name=baeR;gbkey=Gene;gene=baeR;gene_biotype=protein_coding;locus_tag=AD39_RS12575;old_locus_tag=AD39_2363 NZ_JJLH01000028.1 Protein Homology CDS 381229 381951 . + 0 ID=cds-WP_000137873.1;Parent=gene-AD39_RS12575;Dbxref=GenBank:WP_000137873.1;Name=WP_000137873.1;Ontology_term=GO:0000160,GO:0003677;gbkey=CDS;gene=baeR;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416583.1;locus_tag=AD39_RS12575;product=two-component system response regulator BaeR;protein_id=WP_000137873.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 382142 382474 . + . ID=gene-AD39_RS12570;Name=yegP;gbkey=Gene;gene=yegP;gene_biotype=protein_coding;locus_tag=AD39_RS12570;old_locus_tag=AD39_2365 NZ_JJLH01000028.1 Protein Homology CDS 382142 382474 . + 0 ID=cds-WP_000929408.1;Parent=gene-AD39_RS12570;Dbxref=GenBank:WP_000929408.1;Name=WP_000929408.1;gbkey=CDS;gene=yegP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310915.2;locus_tag=AD39_RS12570;product=YegP family protein;protein_id=WP_000929408.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 382621 383982 . + . ID=gene-AD39_RS12565;Name=yegQ;gbkey=Gene;gene=yegQ;gene_biotype=protein_coding;locus_tag=AD39_RS12565;old_locus_tag=AD39_2366 NZ_JJLH01000028.1 Protein Homology CDS 382621 383982 . + 0 ID=cds-WP_000476011.1;Parent=gene-AD39_RS12565;Dbxref=GenBank:WP_000476011.1;Name=WP_000476011.1;gbkey=CDS;gene=yegQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416585.1;locus_tag=AD39_RS12565;product=tRNA 5-hydroxyuridine modification protein YegQ;protein_id=WP_000476011.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 384312 384629 . - . ID=gene-AD39_RS12560;Name=yegR;gbkey=Gene;gene=yegR;gene_biotype=protein_coding;locus_tag=AD39_RS12560;old_locus_tag=AD39_2367 NZ_JJLH01000028.1 Protein Homology CDS 384312 384629 . - 0 ID=cds-WP_000716757.1;Parent=gene-AD39_RS12560;Dbxref=GenBank:WP_000716757.1;Name=WP_000716757.1;gbkey=CDS;gene=yegR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310918.2;locus_tag=AD39_RS12560;product=protein YegR;protein_id=WP_000716757.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 385035 385934 . + . ID=gene-AD39_RS12555;Name=yegS;gbkey=Gene;gene=yegS;gene_biotype=protein_coding;locus_tag=AD39_RS12555;old_locus_tag=AD39_2368 NZ_JJLH01000028.1 Protein Homology CDS 385035 385934 . + 0 ID=cds-WP_000807362.1;Parent=gene-AD39_RS12555;Dbxref=GenBank:WP_000807362.1;Name=WP_000807362.1;Ontology_term=GO:0001727,GO:0046872;gbkey=CDS;gene=yegS;go_function=lipid kinase activity|0001727||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310919.1;locus_tag=AD39_RS12555;product=lipid kinase YegS;protein_id=WP_000807362.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 386016 386789 . - . ID=gene-AD39_RS12550;Name=AD39_RS12550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12550;old_locus_tag=AD39_2369 NZ_JJLH01000028.1 Protein Homology CDS 386016 386789 . - 0 ID=cds-WP_001295426.1;Parent=gene-AD39_RS12550;Dbxref=GenBank:WP_001295426.1;Name=WP_001295426.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001083894.1;locus_tag=AD39_RS12550;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_001295426.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 386895 387935 . - . ID=gene-AD39_RS12545;Name=gatD;gbkey=Gene;gene=gatD;gene_biotype=protein_coding;locus_tag=AD39_RS12545;old_locus_tag=AD39_2370 NZ_JJLH01000028.1 Protein Homology CDS 386895 387935 . - 0 ID=cds-WP_000844220.1;Parent=gene-AD39_RS12545;Dbxref=GenBank:WP_000844220.1;Name=WP_000844220.1;Ontology_term=GO:0008270,GO:0016491;gbkey=CDS;gene=gatD;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310921.1;locus_tag=AD39_RS12545;product=galactitol-1-phosphate 5-dehydrogenase;protein_id=WP_000844220.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 387983 389338 . - . ID=gene-AD39_RS12540;Name=AD39_RS12540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12540;old_locus_tag=AD39_2371 NZ_JJLH01000028.1 Protein Homology CDS 387983 389338 . - 0 ID=cds-WP_000490679.1;Parent=gene-AD39_RS12540;Dbxref=GenBank:WP_000490679.1;Name=WP_000490679.1;Ontology_term=GO:0009401,GO:0015796,GO:0015577,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=galactitol transmembrane transporter activity|0015577||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,galactitol transmembrane transport|0015796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310922.1;locus_tag=AD39_RS12540;product=PTS galactitol transporter subunit IIC;protein_id=WP_000490679.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 389342 389626 . - . ID=gene-AD39_RS12535;Name=gatB;gbkey=Gene;gene=gatB;gene_biotype=protein_coding;locus_tag=AD39_RS12535;old_locus_tag=AD39_2372 NZ_JJLH01000028.1 Protein Homology CDS 389342 389626 . - 0 ID=cds-WP_000823288.1;Parent=gene-AD39_RS12535;Dbxref=GenBank:WP_000823288.1;Name=WP_000823288.1;gbkey=CDS;gene=gatB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310923.1;locus_tag=AD39_RS12535;product=PTS galactitol transporter subunit IIB;protein_id=WP_000823288.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 389657 390109 . - . ID=gene-AD39_RS12530;Name=gatA;gbkey=Gene;gene=gatA;gene_biotype=protein_coding;locus_tag=AD39_RS12530;old_locus_tag=AD39_2373 NZ_JJLH01000028.1 Protein Homology CDS 389657 390109 . - 0 ID=cds-WP_000182904.1;Parent=gene-AD39_RS12530;Dbxref=GenBank:WP_000182904.1;Name=WP_000182904.1;gbkey=CDS;gene=gatA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310924.1;locus_tag=AD39_RS12530;product=PTS galactitol transporter subunit IIA;protein_id=WP_000182904.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 390119 391381 . - . ID=gene-AD39_RS12525;Name=gatZ;gbkey=Gene;gene=gatZ;gene_biotype=protein_coding;locus_tag=AD39_RS12525;old_locus_tag=AD39_2374 NZ_JJLH01000028.1 Protein Homology CDS 390119 391381 . - 0 ID=cds-WP_032283349.1;Parent=gene-AD39_RS12525;Dbxref=GenBank:WP_032283349.1;Name=WP_032283349.1;gbkey=CDS;gene=gatZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416598.1;locus_tag=AD39_RS12525;product=tagatose-bisphosphate aldolase subunit GatZ;protein_id=WP_032283349.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 391410 392264 . - . ID=gene-AD39_RS12520;Name=gatY;gbkey=Gene;gene=gatY;gene_biotype=protein_coding;locus_tag=AD39_RS12520;old_locus_tag=AD39_2375 NZ_JJLH01000028.1 Protein Homology CDS 391410 392264 . - 0 ID=cds-WP_001307281.1;Parent=gene-AD39_RS12520;Dbxref=GenBank:WP_001307281.1;Name=WP_001307281.1;gbkey=CDS;gene=gatY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416599.2;locus_tag=AD39_RS12520;product=tagatose-bisphosphate aldolase subunit GatY;protein_id=WP_001307281.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 392573 393625 . - . ID=gene-AD39_RS12515;Name=fbaB;gbkey=Gene;gene=fbaB;gene_biotype=protein_coding;locus_tag=AD39_RS12515;old_locus_tag=AD39_2376 NZ_JJLH01000028.1 Protein Homology CDS 392573 393625 . - 0 ID=cds-WP_000129551.1;Parent=gene-AD39_RS12515;Dbxref=GenBank:WP_000129551.1;Name=WP_000129551.1;Ontology_term=GO:0004332;gbkey=CDS;gene=fbaB;go_function=fructose-bisphosphate aldolase activity|0004332||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006820796.1;locus_tag=AD39_RS12515;product=class I fructose-bisphosphate aldolase;protein_id=WP_000129551.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 393882 395159 . + . ID=gene-AD39_RS12510;Name=yegT;gbkey=Gene;gene=yegT;gene_biotype=protein_coding;locus_tag=AD39_RS12510;old_locus_tag=AD39_2377 NZ_JJLH01000028.1 Protein Homology CDS 393882 395159 . + 0 ID=cds-WP_000858484.1;Parent=gene-AD39_RS12510;Dbxref=GenBank:WP_000858484.1;Name=WP_000858484.1;Ontology_term=GO:0015858,GO:0055085,GO:0015506,GO:0022857;gbkey=CDS;gene=yegT;go_function=nucleoside:proton symporter activity|0015506||IEA,transmembrane transporter activity|0022857||IEA;go_process=nucleoside transport|0015858||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416601.1;locus_tag=AD39_RS12510;product=nucleoside permease;protein_id=WP_000858484.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 395156 396160 . + . ID=gene-AD39_RS12505;Name=yegU;gbkey=Gene;gene=yegU;gene_biotype=protein_coding;locus_tag=AD39_RS12505;old_locus_tag=AD39_2378 NZ_JJLH01000028.1 Protein Homology CDS 395156 396160 . + 0 ID=cds-WP_032283350.1;Parent=gene-AD39_RS12505;Dbxref=GenBank:WP_032283350.1;Name=WP_032283350.1;gbkey=CDS;gene=yegU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416602.1;locus_tag=AD39_RS12505;product=ADP-ribosylglycohydrolase family protein;protein_id=WP_032283350.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 396157 397122 . + . ID=gene-AD39_RS12500;Name=yegV;gbkey=Gene;gene=yegV;gene_biotype=protein_coding;locus_tag=AD39_RS12500;old_locus_tag=AD39_2379 NZ_JJLH01000028.1 Protein Homology CDS 396157 397122 . + 0 ID=cds-WP_000011957.1;Parent=gene-AD39_RS12500;Dbxref=GenBank:WP_000011957.1;Name=WP_000011957.1;Ontology_term=GO:0005975,GO:0016301;gbkey=CDS;gene=yegV;go_function=kinase activity|0016301||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416603.1;locus_tag=AD39_RS12500;product=carbohydrate kinase family protein;protein_id=WP_000011957.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 397096 397842 . - . ID=gene-AD39_RS12495;Name=yegW;gbkey=Gene;gene=yegW;gene_biotype=protein_coding;locus_tag=AD39_RS12495;old_locus_tag=AD39_2380 NZ_JJLH01000028.1 Protein Homology CDS 397096 397842 . - 0 ID=cds-WP_000434038.1;Parent=gene-AD39_RS12495;Dbxref=GenBank:WP_000434038.1;Name=WP_000434038.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;gene=yegW;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310931.1;locus_tag=AD39_RS12495;product=GntR family transcriptional regulator;protein_id=WP_000434038.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 397894 398712 . - . ID=gene-AD39_RS12490;Name=yegX;gbkey=Gene;gene=yegX;gene_biotype=protein_coding;locus_tag=AD39_RS12490;old_locus_tag=AD39_2381 NZ_JJLH01000028.1 Protein Homology CDS 397894 398712 . - 0 ID=cds-WP_024166611.1;Parent=gene-AD39_RS12490;Dbxref=GenBank:WP_024166611.1;Name=WP_024166611.1;gbkey=CDS;gene=yegX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416605.2;locus_tag=AD39_RS12490;product=glycoside hydrolase family 25 protein;protein_id=WP_024166611.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 398777 399577 . - . ID=gene-AD39_RS12485;Name=thiD;gbkey=Gene;gene=thiD;gene_biotype=protein_coding;locus_tag=AD39_RS12485;old_locus_tag=AD39_2382 NZ_JJLH01000028.1 Protein Homology CDS 398777 399577 . - 0 ID=cds-WP_000822274.1;Parent=gene-AD39_RS12485;Dbxref=GenBank:WP_000822274.1;Name=WP_000822274.1;Ontology_term=GO:0009228,GO:0008902,GO:0008972;gbkey=CDS;gene=thiD;go_function=hydroxymethylpyrimidine kinase activity|0008902||IEA,phosphomethylpyrimidine kinase activity|0008972||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416606.1;locus_tag=AD39_RS12485;product=bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase;protein_id=WP_000822274.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 399574 400362 . - . ID=gene-AD39_RS12480;Name=thiM;gbkey=Gene;gene=thiM;gene_biotype=protein_coding;locus_tag=AD39_RS12480;old_locus_tag=AD39_2383 NZ_JJLH01000028.1 Protein Homology CDS 399574 400362 . - 0 ID=cds-WP_001195634.1;Parent=gene-AD39_RS12480;Dbxref=GenBank:WP_001195634.1;Name=WP_001195634.1;Ontology_term=GO:0009228,GO:0004417;gbkey=CDS;gene=thiM;go_function=hydroxyethylthiazole kinase activity|0004417||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310934.1;locus_tag=AD39_RS12480;product=hydroxyethylthiazole kinase;protein_id=WP_001195634.1;transl_table=11 NZ_JJLH01000028.1 cmsearch riboswitch 400397 400493 . - . ID=id-NZ_JJLH01000028.1:400397..400493;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_JJLH01000028.1 RefSeq gene 400585 400857 . - . ID=gene-AD39_RS12475;Name=rcnR;gbkey=Gene;gene=rcnR;gene_biotype=protein_coding;locus_tag=AD39_RS12475;old_locus_tag=AD39_2384 NZ_JJLH01000028.1 Protein Homology CDS 400585 400857 . - 0 ID=cds-WP_000019944.1;Parent=gene-AD39_RS12475;Dbxref=GenBank:WP_000019944.1;Name=WP_000019944.1;gbkey=CDS;gene=rcnR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310938.1;locus_tag=AD39_RS12475;product=Ni(II)/Co(II)-binding transcriptional repressor RcnR;protein_id=WP_000019944.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 400979 401803 . + . ID=gene-AD39_RS12470;Name=rcnA;gbkey=Gene;gene=rcnA;gene_biotype=protein_coding;locus_tag=AD39_RS12470;old_locus_tag=AD39_2385 NZ_JJLH01000028.1 Protein Homology CDS 400979 401803 . + 0 ID=cds-WP_000134636.1;Parent=gene-AD39_RS12470;Dbxref=GenBank:WP_000134636.1;Name=WP_000134636.1;gbkey=CDS;gene=rcnA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416609.1;locus_tag=AD39_RS12470;product=nickel/cobalt efflux protein RcnA;protein_id=WP_000134636.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 402022 402360 . + . ID=gene-AD39_RS12465;Name=rcnB;gbkey=Gene;gene=rcnB;gene_biotype=protein_coding;locus_tag=AD39_RS12465;old_locus_tag=AD39_2386 NZ_JJLH01000028.1 Protein Homology CDS 402022 402360 . + 0 ID=cds-WP_000153067.1;Parent=gene-AD39_RS12465;Dbxref=GenBank:WP_000153067.1;Name=WP_000153067.1;gbkey=CDS;gene=rcnB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416610.4;locus_tag=AD39_RS12465;product=Ni(II)/Co(II) efflux transporter accessory subunit RcnB;protein_id=WP_000153067.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 402442 403476 . - . ID=gene-AD39_RS12460;Name=yehA;gbkey=Gene;gene=yehA;gene_biotype=protein_coding;locus_tag=AD39_RS12460;old_locus_tag=AD39_2387 NZ_JJLH01000028.1 Protein Homology CDS 402442 403476 . - 0 ID=cds-WP_032283352.1;Parent=gene-AD39_RS12460;Dbxref=GenBank:WP_032283352.1;Name=WP_032283352.1;gbkey=CDS;gene=yehA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416611.1;locus_tag=AD39_RS12460;product=putative fimbrial-like adhesin protein;protein_id=WP_032283352.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 403492 405972 . - . ID=gene-AD39_RS12455;Name=yehB;gbkey=Gene;gene=yehB;gene_biotype=protein_coding;locus_tag=AD39_RS12455;old_locus_tag=AD39_2388 NZ_JJLH01000028.1 Protein Homology CDS 403492 405972 . - 0 ID=cds-WP_000945409.1;Parent=gene-AD39_RS12455;Dbxref=GenBank:WP_000945409.1;Name=WP_000945409.1;gbkey=CDS;gene=yehB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416612.1;locus_tag=AD39_RS12455;product=fimbrial biogenesis outer membrane usher protein;protein_id=WP_000945409.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 405988 406662 . - . ID=gene-AD39_RS12450;Name=yehC;gbkey=Gene;gene=yehC;gene_biotype=protein_coding;locus_tag=AD39_RS12450;old_locus_tag=AD39_2389 NZ_JJLH01000028.1 Protein Homology CDS 405988 406662 . - 0 ID=cds-WP_024166614.1;Parent=gene-AD39_RS12450;Dbxref=GenBank:WP_024166614.1;Name=WP_024166614.1;Ontology_term=GO:0071555,GO:0030288;gbkey=CDS;gene=yehC;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310943.1;locus_tag=AD39_RS12450;product=fimbria/pilus periplasmic chaperone;protein_id=WP_024166614.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 406742 407284 . - . ID=gene-AD39_RS12445;Name=yehD;gbkey=Gene;gene=yehD;gene_biotype=protein_coding;locus_tag=AD39_RS12445;old_locus_tag=AD39_2390 NZ_JJLH01000028.1 Protein Homology CDS 406742 407284 . - 0 ID=cds-WP_000830468.1;Parent=gene-AD39_RS12445;Dbxref=GenBank:WP_000830468.1;Name=WP_000830468.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=yehD;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707997.1;locus_tag=AD39_RS12445;product=fimbrial protein;protein_id=WP_000830468.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 407577 407858 . - . ID=gene-AD39_RS0124480;Name=yehE;gbkey=Gene;gene=yehE;gene_biotype=protein_coding;locus_tag=AD39_RS0124480 NZ_JJLH01000028.1 Protein Homology CDS 407577 407858 . - 0 ID=cds-WP_001324851.1;Parent=gene-AD39_RS0124480;Dbxref=GenBank:WP_001324851.1;Name=WP_001324851.1;gbkey=CDS;gene=yehE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416615.1;locus_tag=AD39_RS0124480;product=YehE family protein;protein_id=WP_001324851.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 408121 409230 . - . ID=gene-AD39_RS12440;Name=apbC;gbkey=Gene;gene=apbC;gene_biotype=protein_coding;locus_tag=AD39_RS12440;old_locus_tag=AD39_2392 NZ_JJLH01000028.1 Protein Homology CDS 408121 409230 . - 0 ID=cds-WP_001005448.1;Parent=gene-AD39_RS12440;Dbxref=GenBank:WP_001005448.1;Name=WP_001005448.1;Ontology_term=GO:0016226,GO:0005524,GO:0016887,GO:0051536;gbkey=CDS;gene=apbC;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310946.2;locus_tag=AD39_RS12440;product=iron-sulfur cluster carrier protein ApbC;protein_id=WP_001005448.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 409362 411395 . + . ID=gene-AD39_RS12435;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=AD39_RS12435;old_locus_tag=AD39_2393 NZ_JJLH01000028.1 Protein Homology CDS 409362 411395 . + 0 ID=cds-WP_001295427.1;Parent=gene-AD39_RS12435;Dbxref=GenBank:WP_001295427.1;Name=WP_001295427.1;Ontology_term=GO:0006431,GO:0000166,GO:0004825,GO:0005524;gbkey=CDS;gene=metG;go_function=nucleotide binding|0000166||IEA,methionine-tRNA ligase activity|0004825||IEA,ATP binding|0005524||IEA;go_process=methionyl-tRNA aminoacylation|0006431||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310947.1;locus_tag=AD39_RS12435;product=methionine--tRNA ligase;protein_id=WP_001295427.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 411536 415330 . + . ID=gene-AD39_RS12430;Name=AD39_RS12430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12430;old_locus_tag=AD39_2394 NZ_JJLH01000028.1 Protein Homology CDS 411536 415330 . + 0 ID=cds-WP_032141893.1;Parent=gene-AD39_RS12430;Dbxref=GenBank:WP_032141893.1;Name=WP_032141893.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001215568.1;locus_tag=AD39_RS12430;product=DUF4132 domain-containing protein;protein_id=WP_032141893.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 415340 418972 . + . ID=gene-AD39_RS12425;Name=yehI;gbkey=Gene;gene=yehI;gene_biotype=protein_coding;locus_tag=AD39_RS12425;old_locus_tag=AD39_2395 NZ_JJLH01000028.1 Protein Homology CDS 415340 418972 . + 0 ID=cds-WP_032283353.1;Parent=gene-AD39_RS12425;Dbxref=GenBank:WP_032283353.1;Name=WP_032283353.1;gbkey=CDS;gene=yehI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416621.1;locus_tag=AD39_RS12425;product=DUF4132 domain-containing protein YehI;protein_id=WP_032283353.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 419033 419386 . + . ID=gene-AD39_RS0124485;Name=AD39_RS0124485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124485 NZ_JJLH01000028.1 Protein Homology CDS 419033 419386 . + 0 ID=cds-WP_023155410.1;Parent=gene-AD39_RS0124485;Dbxref=GenBank:WP_023155410.1;Name=WP_023155410.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708006.1;locus_tag=AD39_RS0124485;product=hypothetical protein;protein_id=WP_023155410.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 420533 421621 . + . ID=gene-AD39_RS12420;Name=yehL;gbkey=Gene;gene=yehL;gene_biotype=protein_coding;locus_tag=AD39_RS12420;old_locus_tag=AD39_2396 NZ_JJLH01000028.1 Protein Homology CDS 420533 421621 . + 0 ID=cds-WP_032283354.1;Parent=gene-AD39_RS12420;Dbxref=GenBank:WP_032283354.1;Name=WP_032283354.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;gene=yehL;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310954.2;locus_tag=AD39_RS12420;product=ATP-binding protein;protein_id=WP_032283354.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 421632 423911 . + . ID=gene-AD39_RS12415;Name=yehM;gbkey=Gene;gene=yehM;gene_biotype=protein_coding;locus_tag=AD39_RS12415;old_locus_tag=AD39_2397 NZ_JJLH01000028.1 Protein Homology CDS 421632 423911 . + 0 ID=cds-WP_032283356.1;Parent=gene-AD39_RS12415;Dbxref=GenBank:WP_032283356.1;Name=WP_032283356.1;gbkey=CDS;gene=yehM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708008.2;locus_tag=AD39_RS12415;product=DUF5682 family protein;protein_id=WP_032283356.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 423904 425040 . + . ID=gene-AD39_RS12410;Name=yehP;gbkey=Gene;gene=yehP;gene_biotype=protein_coding;locus_tag=AD39_RS12410;old_locus_tag=AD39_2398 NZ_JJLH01000028.1 Protein Homology CDS 423904 425040 . + 0 ID=cds-WP_032287569.1;Parent=gene-AD39_RS12410;Dbxref=GenBank:WP_032287569.1;Name=WP_032287569.1;gbkey=CDS;gene=yehP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416625.1;locus_tag=AD39_RS12410;product=vWA domain-containing protein;protein_id=WP_032287569.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 425037 427037 . + . ID=gene-AD39_RS12405;Name=yehQ;gbkey=Gene;gene=yehQ;gene_biotype=protein_coding;locus_tag=AD39_RS12405;old_locus_tag=AD39_2399 NZ_JJLH01000028.1 Protein Homology CDS 425037 427037 . + 0 ID=cds-WP_001402348.1;Parent=gene-AD39_RS12405;Dbxref=GenBank:WP_001402348.1;Name=WP_001402348.1;Ontology_term=GO:0008270;gbkey=CDS;gene=yehQ;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708010.2;locus_tag=AD39_RS12405;product=SWIM zinc finger family protein;protein_id=WP_001402348.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 427162 427623 . + . ID=gene-AD39_RS12400;Name=yehR;gbkey=Gene;gene=yehR;gene_biotype=protein_coding;locus_tag=AD39_RS12400;old_locus_tag=AD39_2400 NZ_JJLH01000028.1 Protein Homology CDS 427162 427623 . + 0 ID=cds-WP_001295429.1;Parent=gene-AD39_RS12400;Dbxref=GenBank:WP_001295429.1;Name=WP_001295429.1;gbkey=CDS;gene=yehR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416627.2;locus_tag=AD39_RS12400;product=YehR family lipoprotein;protein_id=WP_001295429.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 427663 428133 . - . ID=gene-AD39_RS12395;Name=yehS;gbkey=Gene;gene=yehS;gene_biotype=protein_coding;locus_tag=AD39_RS12395;old_locus_tag=AD39_2401 NZ_JJLH01000028.1 Protein Homology CDS 427663 428133 . - 0 ID=cds-WP_000950409.1;Parent=gene-AD39_RS12395;Dbxref=GenBank:WP_000950409.1;Name=WP_000950409.1;gbkey=CDS;gene=yehS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416628.1;locus_tag=AD39_RS12395;product=DUF1456 family protein;protein_id=WP_000950409.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 428180 428899 . - . ID=gene-AD39_RS12390;Name=btsR;gbkey=Gene;gene=btsR;gene_biotype=protein_coding;gene_synonym=yehT;locus_tag=AD39_RS12390;old_locus_tag=AD39_2402 NZ_JJLH01000028.1 Protein Homology CDS 428180 428899 . - 0 ID=cds-WP_000598641.1;Parent=gene-AD39_RS12390;Dbxref=GenBank:WP_000598641.1;Name=WP_000598641.1;gbkey=CDS;gene=btsR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310963.2;locus_tag=AD39_RS12390;product=two-component system response regulator BtsR;protein_id=WP_000598641.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 428896 430581 . - . ID=gene-AD39_RS12385;Name=btsS;gbkey=Gene;gene=btsS;gene_biotype=protein_coding;locus_tag=AD39_RS12385;old_locus_tag=AD39_2403 NZ_JJLH01000028.1 Protein Homology CDS 428896 430581 . - 0 ID=cds-WP_001295431.1;Parent=gene-AD39_RS12385;Dbxref=GenBank:WP_001295431.1;Name=WP_001295431.1;gbkey=CDS;gene=btsS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416630.1;locus_tag=AD39_RS12385;product=two-component regulatory system sensor histidine kinase BtsS;protein_id=WP_001295431.1;transl_table=11 NZ_JJLH01000028.1 RefSeq pseudogene 430803 430868 . + . ID=gene-AD39_RS29720;Name=AD39_RS29720;end_range=430868,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29720;partial=true;pseudo=true NZ_JJLH01000028.1 Protein Homology CDS 430803 430868 . + 0 ID=cds-AD39_RS29720;Parent=gene-AD39_RS29720;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=430868,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416631.1;locus_tag=AD39_RS29720;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 431096 431344 . + . ID=gene-AD39_RS12380;Name=AD39_RS12380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12380;old_locus_tag=AD39_2404 NZ_JJLH01000028.1 Protein Homology CDS 431096 431344 . + 0 ID=cds-WP_001261938.1;Parent=gene-AD39_RS12380;Dbxref=GenBank:WP_001261938.1;Name=WP_001261938.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708018.1;locus_tag=AD39_RS12380;product=DinI-like family protein;protein_id=WP_001261938.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 431341 431436 . - . ID=gene-AD39_RS29725;Name=AD39_RS29725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29725 NZ_JJLH01000028.1 Protein Homology CDS 431341 431436 . - 0 ID=cds-WP_071779568.1;Parent=gene-AD39_RS29725;Dbxref=GenBank:WP_071779568.1;Name=WP_071779568.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001437322.1;locus_tag=AD39_RS29725;product=capsid protein;protein_id=WP_071779568.1;transl_table=11 NZ_JJLH01000028.1 RefSeq pseudogene 431448 431576 . - . ID=gene-AD39_RS27100;Name=AD39_RS27100;end_range=431576,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS27100;partial=true;pseudo=true NZ_JJLH01000028.1 Protein Homology CDS 431448 431576 . - 0 ID=cds-AD39_RS27100;Parent=gene-AD39_RS27100;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006310,GO:0000150,GO:0003677;end_range=431576,.;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308311.1;locus_tag=AD39_RS27100;partial=true;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 431661 432206 . + . ID=gene-AD39_RS12375;Name=AD39_RS12375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12375;old_locus_tag=AD39_2405 NZ_JJLH01000028.1 Protein Homology CDS 431661 432206 . + 0 ID=cds-WP_001026780.1;Parent=gene-AD39_RS12375;Dbxref=GenBank:WP_001026780.1;Name=WP_001026780.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001533330.1;locus_tag=AD39_RS12375;product=serine acetyltransferase;protein_id=WP_001026780.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 432217 432789 . - . ID=gene-AD39_RS12370;Name=AD39_RS12370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12370;old_locus_tag=AD39_2406 NZ_JJLH01000028.1 Protein Homology CDS 432217 432789 . - 0 ID=cds-WP_032266297.1;Parent=gene-AD39_RS12370;Dbxref=GenBank:WP_032266297.1;Name=WP_032266297.1;Ontology_term=GO:0098004;gbkey=CDS;go_process=virus tail fiber assembly|0098004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016233434.1;locus_tag=AD39_RS12370;product=tail fiber assembly protein;protein_id=WP_032266297.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 432798 433688 . - . ID=gene-AD39_RS12365;Name=AD39_RS12365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12365;old_locus_tag=AD39_2407 NZ_JJLH01000028.1 Protein Homology CDS 432798 433688 . - 0 ID=cds-WP_032283359.1;Parent=gene-AD39_RS12365;Dbxref=GenBank:WP_032283359.1;Name=WP_032283359.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000631340.1;locus_tag=AD39_RS12365;product=macro domain-containing protein;protein_id=WP_032283359.1;transl_table=11 NZ_JJLH01000028.1 RefSeq gene 433685 436724 . - . ID=gene-AD39_RS27105;Name=AD39_RS27105;end_range=436724,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS27105;partial=true NZ_JJLH01000028.1 Protein Homology CDS 433685 436724 . - 1 ID=cds-WP_071998891.1;Parent=gene-AD39_RS27105;Dbxref=GenBank:WP_071998891.1;Name=WP_071998891.1;end_range=436724,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000216499.1;locus_tag=AD39_RS27105;partial=true;product=prophage tail fiber N-terminal domain-containing protein;protein_id=WP_071998891.1;transl_table=11 ##sequence-region NZ_JJLH01000029.1 1 10903 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000029.1 RefSeq region 1 10903 . + . ID=NZ_JJLH01000029.1:1..10903;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000029.1 RefSeq gene 136 324 . + . ID=gene-AD39_RS29435;Name=AD39_RS29435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29435 NZ_JJLH01000029.1 GeneMarkS-2+ CDS 136 324 . + 0 ID=cds-WP_000180465.1;Parent=gene-AD39_RS29435;Dbxref=GenBank:WP_000180465.1;Name=WP_000180465.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS29435;product=hypothetical protein;protein_id=WP_000180465.1;transl_table=11 NZ_JJLH01000029.1 RefSeq gene 652 846 . + . ID=gene-AD39_RS12350;Name=AD39_RS12350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12350;old_locus_tag=AD39_2413 NZ_JJLH01000029.1 Protein Homology CDS 652 846 . + 0 ID=cds-WP_001004881.1;Parent=gene-AD39_RS12350;Dbxref=GenBank:WP_001004881.1;Name=WP_001004881.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309391.1;locus_tag=AD39_RS12350;product=hypothetical protein;protein_id=WP_001004881.1;transl_table=11 NZ_JJLH01000029.1 RefSeq pseudogene 1159 1523 . + . ID=gene-AD39_RS30170;Name=AD39_RS30170;end_range=1523,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30170;partial=true;pseudo=true;start_range=.,1159 NZ_JJLH01000029.1 Protein Homology CDS 1159 1523 . + 0 ID=cds-AD39_RS30170;Parent=gene-AD39_RS30170;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0015074;end_range=1523,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611151.1;locus_tag=AD39_RS30170;partial=true;product=DDE-type integrase/transposase/recombinase;pseudo=true;start_range=.,1159;transl_table=11 NZ_JJLH01000029.1 RefSeq pseudogene 1645 1981 . - . ID=gene-AD39_RS27125;Name=AD39_RS27125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS27125;pseudo=true NZ_JJLH01000029.1 Protein Homology CDS 1645 1981 . - 0 ID=cds-AD39_RS27125;Parent=gene-AD39_RS27125;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502602.1;locus_tag=AD39_RS27125;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000029.1 RefSeq gene 2615 2833 . - . ID=gene-AD39_RS12345;Name=AD39_RS12345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12345;old_locus_tag=AD39_2416 NZ_JJLH01000029.1 Protein Homology CDS 2615 2833 . - 0 ID=cds-WP_000477617.1;Parent=gene-AD39_RS12345;Dbxref=GenBank:WP_000477617.1;Name=WP_000477617.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309389.2;locus_tag=AD39_RS12345;product=hypothetical protein;protein_id=WP_000477617.1;transl_table=11 NZ_JJLH01000029.1 RefSeq gene 4164 4346 . - . ID=gene-AD39_RS30055;Name=AD39_RS30055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30055 NZ_JJLH01000029.1 Protein Homology CDS 4164 4346 . - 0 ID=cds-WP_000922604.1;Parent=gene-AD39_RS30055;Dbxref=GenBank:WP_000922604.1;Name=WP_000922604.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000922600.1;locus_tag=AD39_RS30055;product=hypothetical protein;protein_id=WP_000922604.1;transl_table=11 NZ_JJLH01000029.1 RefSeq gene 4285 6375 . + . ID=gene-AD39_RS12335;Name=iha;gbkey=Gene;gene=iha;gene_biotype=protein_coding;locus_tag=AD39_RS12335;old_locus_tag=AD39_2418 NZ_JJLH01000029.1 Protein Homology CDS 4285 6375 . + 0 ID=cds-WP_032170650.1;Parent=gene-AD39_RS12335;Dbxref=GenBank:WP_032170650.1;Name=WP_032170650.1;gbkey=CDS;gene=iha;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309387.1;locus_tag=AD39_RS12335;product=bifunctional siderophore receptor/adhesin Iha;protein_id=WP_032170650.1;transl_table=11 NZ_JJLH01000029.1 RefSeq pseudogene 6593 6743 . - . ID=gene-AD39_RS29070;Name=AD39_RS29070;end_range=6743,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29070;partial=true;pseudo=true NZ_JJLH01000029.1 Protein Homology CDS 6593 6743 . - 0 ID=cds-AD39_RS29070;Parent=gene-AD39_RS29070;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=6743,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001562684.1;locus_tag=AD39_RS29070;partial=true;product=transposase domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000029.1 RefSeq pseudogene 7308 7760 . - . ID=gene-AD39_RS12330;Name=AD39_RS12330;end_range=7760,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS12330;old_locus_tag=AD39_2419;partial=true;pseudo=true NZ_JJLH01000029.1 Protein Homology CDS 7308 7760 . - 0 ID=cds-AD39_RS12330;Parent=gene-AD39_RS12330;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=7760,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000998048.1;locus_tag=AD39_RS12330;partial=true;product=IS66 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000029.1 RefSeq gene 7931 8356 . + . ID=gene-AD39_RS12325;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=protein_coding;locus_tag=AD39_RS12325;old_locus_tag=AD39_2420 NZ_JJLH01000029.1 Protein Homology CDS 7931 8356 . + 0 ID=cds-WP_000422740.1;Parent=gene-AD39_RS12325;Dbxref=GenBank:WP_000422740.1;Name=WP_000422740.1;gbkey=CDS;gene=tnpA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001373091.1;locus_tag=AD39_RS12325;product=IS66-like element accessory protein TnpA;protein_id=WP_000422740.1;transl_table=11 NZ_JJLH01000029.1 RefSeq gene 8353 8703 . + . ID=gene-AD39_RS12320;Name=tnpB;gbkey=Gene;gene=tnpB;gene_biotype=protein_coding;locus_tag=AD39_RS12320;old_locus_tag=AD39_2421 NZ_JJLH01000029.1 Protein Homology CDS 8353 8703 . + 0 ID=cds-WP_000624729.1;Parent=gene-AD39_RS12320;Dbxref=GenBank:WP_000624729.1;Name=WP_000624729.1;Note=TnpB%2C as the term is used for proteins encoded by IS66 family insertion elements%2C is considered an accessory protein%2C since TnpC%2C encoded by a neighboring gene%2C is a DDE family transposase.;gbkey=CDS;gene=tnpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311895.1;locus_tag=AD39_RS12320;product=IS66 family insertion sequence element accessory protein TnpB;protein_id=WP_000624729.1;transl_table=11 NZ_JJLH01000029.1 RefSeq pseudogene 8734 10349 . + . ID=gene-AD39_RS12315;Name=AD39_RS12315;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS12315;old_locus_tag=AD39_2422;pseudo=true NZ_JJLH01000029.1 Protein Homology CDS 8734 10349 . + 0 ID=cds-AD39_RS12315;Parent=gene-AD39_RS12315;Note=frameshifted;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000080172.1;locus_tag=AD39_RS12315;product=IS66-like element ISEc43 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000029.1 RefSeq gene 10464 10844 . + . ID=gene-AD39_RS0124550;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=protein_coding;locus_tag=AD39_RS0124550 NZ_JJLH01000029.1 Protein Homology CDS 10464 10844 . + 0 ID=cds-WP_024183663.1;Parent=gene-AD39_RS0124550;Dbxref=GenBank:WP_024183663.1;Name=WP_024183663.1;gbkey=CDS;gene=tnpA;inference=COORDINATES: protein motif:HMM:NF047595.1;locus_tag=AD39_RS0124550;product=IS66-like element accessory protein TnpA;protein_id=WP_024183663.1;transl_table=11 ##sequence-region NZ_JJLH01000030.1 1 8152 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000030.1 RefSeq region 1 8152 . + . ID=NZ_JJLH01000030.1:1..8152;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000030.1 RefSeq gene 179 388 . - . ID=gene-AD39_RS30175;Name=AD39_RS30175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30175 NZ_JJLH01000030.1 Protein Homology CDS 179 388 . - 0 ID=cds-WP_032148508.1;Parent=gene-AD39_RS30175;Dbxref=GenBank:WP_032148508.1;Name=WP_032148508.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: protein motif:HMM:NF013677.6;locus_tag=AD39_RS30175;product=transposase;protein_id=WP_032148508.1;transl_table=11 NZ_JJLH01000030.1 RefSeq gene 743 1177 . - . ID=gene-AD39_RS12310;Name=AD39_RS12310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12310;old_locus_tag=AD39_2424 NZ_JJLH01000030.1 Protein Homology CDS 743 1177 . - 0 ID=cds-WP_001221615.1;Parent=gene-AD39_RS12310;Dbxref=GenBank:WP_001221615.1;Name=WP_001221615.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001556209.1;locus_tag=AD39_RS12310;product=zinc-ribbon domain-containing protein;protein_id=WP_001221615.1;transl_table=11 NZ_JJLH01000030.1 RefSeq gene 1165 1566 . - . ID=gene-AD39_RS12305;Name=AD39_RS12305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12305;old_locus_tag=AD39_2425 NZ_JJLH01000030.1 Protein Homology CDS 1165 1566 . - 0 ID=cds-WP_032287572.1;Parent=gene-AD39_RS12305;Dbxref=GenBank:WP_032287572.1;Name=WP_032287572.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004020115.1;locus_tag=AD39_RS12305;product=putative zinc ribbon protein;protein_id=WP_032287572.1;transl_table=11 NZ_JJLH01000030.1 RefSeq gene 1826 2395 . - . ID=gene-AD39_RS12300;Name=AD39_RS12300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12300;old_locus_tag=AD39_2426 NZ_JJLH01000030.1 Protein Homology CDS 1826 2395 . - 0 ID=cds-WP_000221544.1;Parent=gene-AD39_RS12300;Dbxref=GenBank:WP_000221544.1;Name=WP_000221544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000221568.1;locus_tag=AD39_RS12300;product=inovirus Gp2 family protein;protein_id=WP_000221544.1;transl_table=11 NZ_JJLH01000030.1 RefSeq gene 2595 2795 . + . ID=gene-AD39_RS29730;Name=AD39_RS29730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29730 NZ_JJLH01000030.1 Protein Homology CDS 2595 2795 . + 0 ID=cds-WP_001297219.1;Parent=gene-AD39_RS29730;Dbxref=GenBank:WP_001297219.1;Name=WP_001297219.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001297900.1;locus_tag=AD39_RS29730;product=hypothetical protein;protein_id=WP_001297219.1;transl_table=11 NZ_JJLH01000030.1 RefSeq gene 3134 3271 . - . ID=gene-AD39_RS30060;Name=AD39_RS30060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30060 NZ_JJLH01000030.1 Protein Homology CDS 3134 3271 . - 0 ID=cds-WP_001418354.1;Parent=gene-AD39_RS30060;Dbxref=GenBank:WP_001418354.1;Name=WP_001418354.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF017162.6;locus_tag=AD39_RS30060;product=hypothetical protein;protein_id=WP_001418354.1;transl_table=11 NZ_JJLH01000030.1 RefSeq gene 4015 4221 . + . ID=gene-AD39_RS28490;Name=AD39_RS28490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28490;old_locus_tag=AD39_2427 NZ_JJLH01000030.1 Protein Homology CDS 4015 4221 . + 0 ID=cds-WP_000235215.1;Parent=gene-AD39_RS28490;Dbxref=GenBank:WP_000235215.1;Name=WP_000235215.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020234041.1;locus_tag=AD39_RS28490;product=helix-turn-helix transcriptional regulator;protein_id=WP_000235215.1;transl_table=11 NZ_JJLH01000030.1 RefSeq gene 4316 4918 . + . ID=gene-AD39_RS12290;Name=AD39_RS12290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12290;old_locus_tag=AD39_2428 NZ_JJLH01000030.1 Protein Homology CDS 4316 4918 . + 0 ID=cds-WP_000813451.1;Parent=gene-AD39_RS12290;Dbxref=GenBank:WP_000813451.1;Name=WP_000813451.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001590672.1;locus_tag=AD39_RS12290;product=hypothetical protein;protein_id=WP_000813451.1;transl_table=11 NZ_JJLH01000030.1 RefSeq gene 5240 6724 . - . ID=gene-AD39_RS12285;Name=AD39_RS12285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12285;old_locus_tag=AD39_2429 NZ_JJLH01000030.1 Protein Homology CDS 5240 6724 . - 0 ID=cds-WP_001297234.1;Parent=gene-AD39_RS12285;Dbxref=GenBank:WP_001297234.1;Name=WP_001297234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001405821.1;locus_tag=AD39_RS12285;product=YfjI family protein;protein_id=WP_001297234.1;transl_table=11 NZ_JJLH01000030.1 RefSeq pseudogene 7955 8152 . + . ID=gene-AD39_RS12280;Name=AD39_RS12280;end_range=8152,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS12280;old_locus_tag=AD39_2432;partial=true;pseudo=true NZ_JJLH01000030.1 Protein Homology CDS 7955 8152 . + 0 ID=cds-AD39_RS12280;Parent=gene-AD39_RS12280;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=8152,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309422.1;locus_tag=AD39_RS12280;partial=true;product=ATP-binding cassette domain-containing protein;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000031.1 1 1786 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000031.1 RefSeq region 1 1786 . + . ID=NZ_JJLH01000031.1:1..1786;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000031.1 RefSeq gene 29 901 . + . ID=gene-AD39_RS12275;Name=AD39_RS12275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12275;old_locus_tag=AD39_2433 NZ_JJLH01000031.1 Protein Homology CDS 29 901 . + 0 ID=cds-WP_001069744.1;Parent=gene-AD39_RS12275;Dbxref=GenBank:WP_001069744.1;Name=WP_001069744.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309422.1;locus_tag=AD39_RS12275;product=GTPase family protein;protein_id=WP_001069744.1;transl_table=11 NZ_JJLH01000031.1 RefSeq gene 1274 1786 . + . ID=gene-AD39_RS12270;Name=AD39_RS12270;end_range=1786,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12270;old_locus_tag=AD39_2434;partial=true NZ_JJLH01000031.1 Protein Homology CDS 1274 1786 . + 0 ID=cds-WP_032287573.1;Parent=gene-AD39_RS12270;Dbxref=GenBank:WP_032287573.1;Name=WP_032287573.1;end_range=1786,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026164.1;locus_tag=AD39_RS12270;partial=true;product=ESPR-type extended signal peptide-containing protein;protein_id=WP_032287573.1;transl_table=11 ##sequence-region NZ_JJLH01000032.1 1 18601 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000032.1 RefSeq region 1 18601 . + . ID=NZ_JJLH01000032.1:1..18601;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000032.1 RefSeq gene 1 2864 . + . ID=gene-AD39_RS0124580;Name=agn43;gbkey=Gene;gene=agn43;gene_biotype=protein_coding;gene_synonym=flu;locus_tag=AD39_RS0124580;old_locus_tag=AD39_2435;partial=true;start_range=.,1 NZ_JJLH01000032.1 Protein Homology CDS 1 2864 . + 2 ID=cds-WP_032287574.1;Parent=gene-AD39_RS0124580;Dbxref=GenBank:WP_032287574.1;Name=WP_032287574.1;gbkey=CDS;gene=agn43;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026164.1;locus_tag=AD39_RS0124580;partial=true;product=autotransporter adhesin Ag43;protein_id=WP_032287574.1;start_range=.,1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 2985 5501 . + . ID=gene-AD39_RS12265;Name=AD39_RS12265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12265;old_locus_tag=AD39_2436 NZ_JJLH01000032.1 Protein Homology CDS 2985 5501 . + 0 ID=cds-WP_001315618.1;Parent=gene-AD39_RS12265;Dbxref=GenBank:WP_001315618.1;Name=WP_001315618.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708766.2;locus_tag=AD39_RS12265;product=hypothetical protein;protein_id=WP_001315618.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 5577 6032 . + . ID=gene-AD39_RS12260;Name=AD39_RS12260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12260;old_locus_tag=AD39_2437 NZ_JJLH01000032.1 Protein Homology CDS 5577 6032 . + 0 ID=cds-WP_000581504.1;Parent=gene-AD39_RS12260;Dbxref=GenBank:WP_000581504.1;Name=WP_000581504.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708767.1;locus_tag=AD39_RS12260;product=IrmA family protein;protein_id=WP_000581504.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 6111 6344 . + . ID=gene-AD39_RS0124585;Name=AD39_RS0124585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124585 NZ_JJLH01000032.1 Protein Homology CDS 6111 6344 . + 0 ID=cds-WP_001119729.1;Parent=gene-AD39_RS0124585;Dbxref=GenBank:WP_001119729.1;Name=WP_001119729.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001119724.1;locus_tag=AD39_RS0124585;product=DUF905 family protein;protein_id=WP_001119729.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 6444 7262 . + . ID=gene-AD39_RS12255;Name=AD39_RS12255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12255;old_locus_tag=AD39_2439 NZ_JJLH01000032.1 Protein Homology CDS 6444 7262 . + 0 ID=cds-WP_001234620.1;Parent=gene-AD39_RS12255;Dbxref=GenBank:WP_001234620.1;Name=WP_001234620.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708768.1;locus_tag=AD39_RS12255;product=DUF932 domain-containing protein;protein_id=WP_001234620.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 7317 7802 . + . ID=gene-AD39_RS12250;Name=AD39_RS12250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12250;old_locus_tag=AD39_2440 NZ_JJLH01000032.1 Protein Homology CDS 7317 7802 . + 0 ID=cds-WP_001533491.1;Parent=gene-AD39_RS12250;Dbxref=GenBank:WP_001533491.1;Name=WP_001533491.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309429.1;locus_tag=AD39_RS12250;product=antirestriction protein;protein_id=WP_001533491.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 7818 8294 . + . ID=gene-AD39_RS12245;Name=AD39_RS12245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12245;old_locus_tag=AD39_2441 NZ_JJLH01000032.1 Protein Homology CDS 7818 8294 . + 0 ID=cds-WP_001560709.1;Parent=gene-AD39_RS12245;Dbxref=GenBank:WP_001560709.1;Name=WP_001560709.1;Ontology_term=GO:0006508,GO:0008237,GO:0046872;gbkey=CDS;go_function=metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310830.1;locus_tag=AD39_RS12245;product=JAB domain-containing protein;protein_id=WP_001560709.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 8357 8578 . + . ID=gene-AD39_RS12240;Name=AD39_RS12240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12240;old_locus_tag=AD39_2442 NZ_JJLH01000032.1 Protein Homology CDS 8357 8578 . + 0 ID=cds-WP_000692345.1;Parent=gene-AD39_RS12240;Dbxref=GenBank:WP_000692345.1;Name=WP_000692345.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309431.1;locus_tag=AD39_RS12240;product=DUF987 domain-containing protein;protein_id=WP_000692345.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 8741 9109 . + . ID=gene-AD39_RS0124590;Name=AD39_RS0124590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124590;old_locus_tag=AD39_2444 NZ_JJLH01000032.1 Protein Homology CDS 8741 9109 . + 0 ID=cds-WP_032283690.1;Parent=gene-AD39_RS0124590;Dbxref=GenBank:WP_032283690.1;Name=WP_032283690.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001280950.1;locus_tag=AD39_RS0124590;product=type IV toxin-antitoxin system YeeU family antitoxin;protein_id=WP_032283690.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 9199 9573 . + . ID=gene-AD39_RS12230;Name=AD39_RS12230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12230;old_locus_tag=AD39_2445 NZ_JJLH01000032.1 Protein Homology CDS 9199 9573 . + 0 ID=cds-WP_000854753.1;Parent=gene-AD39_RS12230;Dbxref=GenBank:WP_000854753.1;Name=WP_000854753.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309433.1;locus_tag=AD39_RS12230;product=TA system toxin CbtA family protein;protein_id=WP_000854753.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 9570 10058 . + . ID=gene-AD39_RS12225;Name=AD39_RS12225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12225;old_locus_tag=AD39_2446 NZ_JJLH01000032.1 Protein Homology CDS 9570 10058 . + 0 ID=cds-WP_000777547.1;Parent=gene-AD39_RS12225;Dbxref=GenBank:WP_000777547.1;Name=WP_000777547.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001499210.1;locus_tag=AD39_RS12225;product=DUF5983 family protein;protein_id=WP_000777547.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 10070 10267 . + . ID=gene-AD39_RS12220;Name=AD39_RS12220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12220;old_locus_tag=AD39_2447 NZ_JJLH01000032.1 Protein Homology CDS 10070 10267 . + 0 ID=cds-WP_000839281.1;Parent=gene-AD39_RS12220;Dbxref=GenBank:WP_000839281.1;Name=WP_000839281.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309435.1;locus_tag=AD39_RS12220;product=DUF957 domain-containing protein;protein_id=WP_000839281.1;transl_table=11 NZ_JJLH01000032.1 RefSeq pseudogene 10352 10501 . + . ID=gene-AD39_RS29440;Name=AD39_RS29440;end_range=10501,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29440;old_locus_tag=AD39_2448;partial=true;pseudo=true NZ_JJLH01000032.1 Protein Homology CDS 10352 10501 . + 0 ID=cds-AD39_RS29440;Parent=gene-AD39_RS29440;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=10501,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309436.1;locus_tag=AD39_RS29440;partial=true;product=DUF4942 domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000032.1 RefSeq pseudogene 10477 10605 . + . ID=gene-AD39_RS30065;Name=AD39_RS30065;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30065;partial=true;pseudo=true;start_range=.,10477 NZ_JJLH01000032.1 Protein Homology CDS 10477 10605 . + 0 ID=cds-AD39_RS30065;Parent=gene-AD39_RS30065;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005166249.1;locus_tag=AD39_RS30065;partial=true;product=helix-turn-helix transcriptional regulator;pseudo=true;start_range=.,10477;transl_table=11 NZ_JJLH01000032.1 RefSeq pseudogene 11279 11428 . - . ID=gene-AD39_RS29735;Name=AD39_RS29735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29735;partial=true;pseudo=true;start_range=.,11279 NZ_JJLH01000032.1 Protein Homology CDS 11279 11428 . - 0 ID=cds-AD39_RS29735;Parent=gene-AD39_RS29735;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_080685909.1;locus_tag=AD39_RS29735;partial=true;product=phosphorothioated DNA-binding restriction endonuclease;pseudo=true;start_range=.,11279;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 11565 12215 . + . ID=gene-AD39_RS12210;Name=AD39_RS12210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12210;old_locus_tag=AD39_2451 NZ_JJLH01000032.1 Protein Homology CDS 11565 12215 . + 0 ID=cds-WP_001037966.1;Parent=gene-AD39_RS12210;Dbxref=GenBank:WP_001037966.1;Name=WP_001037966.1;Ontology_term=GO:0003677,GO:0004519,GO:0008270;gbkey=CDS;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA,zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001586610.1;locus_tag=AD39_RS12210;product=HNH endonuclease;protein_id=WP_001037966.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 12215 12304 . + . ID=gene-AD39_RS30180;Name=AD39_RS30180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30180 NZ_JJLH01000032.1 Protein Homology CDS 12215 12304 . + 0 ID=cds-WP_418267963.1;Parent=gene-AD39_RS30180;Dbxref=GenBank:WP_418267963.1;Name=WP_418267963.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051216.1;locus_tag=AD39_RS30180;product=hypothetical protein;protein_id=WP_418267963.1;transl_table=11 NZ_JJLH01000032.1 RefSeq pseudogene 12637 13203 . - . ID=gene-AD39_RS30185;Name=AD39_RS30185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30185;partial=true;pseudo=true;start_range=.,12637 NZ_JJLH01000032.1 Protein Homology CDS 12637 13203 . - 0 ID=cds-AD39_RS30185;Parent=gene-AD39_RS30185;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF015585.6;locus_tag=AD39_RS30185;partial=true;product=sialate O-acetylesterase;pseudo=true;start_range=.,12637;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 13268 14374 . - . ID=gene-AD39_RS12200;Name=nanM;gbkey=Gene;gene=nanM;gene_biotype=protein_coding;locus_tag=AD39_RS12200;old_locus_tag=AD39_2453 NZ_JJLH01000032.1 Protein Homology CDS 13268 14374 . - 0 ID=cds-WP_001315214.1;Parent=gene-AD39_RS12200;Dbxref=GenBank:WP_001315214.1;Name=WP_001315214.1;gbkey=CDS;gene=nanM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418730.4;locus_tag=AD39_RS12200;product=N-acetylneuraminate epimerase;protein_id=WP_001315214.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 14394 15110 . - . ID=gene-AD39_RS12195;Name=nanC;gbkey=Gene;gene=nanC;gene_biotype=protein_coding;locus_tag=AD39_RS12195;old_locus_tag=AD39_2454 NZ_JJLH01000032.1 Protein Homology CDS 14394 15110 . - 0 ID=cds-WP_001360088.1;Parent=gene-AD39_RS12195;Dbxref=GenBank:WP_001360088.1;Name=WP_001360088.1;gbkey=CDS;gene=nanC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313297.2;locus_tag=AD39_RS12195;product=N-acetylneuraminic acid outer membrane channel NanC;protein_id=WP_001360088.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 16564 17166 . + . ID=gene-AD39_RS12190;Name=fimB;gbkey=Gene;gene=fimB;gene_biotype=protein_coding;locus_tag=AD39_RS12190;old_locus_tag=AD39_2455 NZ_JJLH01000032.1 Protein Homology CDS 16564 17166 . + 0 ID=cds-WP_000790583.1;Parent=gene-AD39_RS12190;Dbxref=GenBank:WP_000790583.1;Name=WP_000790583.1;gbkey=CDS;gene=fimB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313298.1;locus_tag=AD39_RS12190;product=type 1 fimbria switch DNA invertase FimB;protein_id=WP_000790583.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 17643 18239 . + . ID=gene-AD39_RS12185;Name=fimE;gbkey=Gene;gene=fimE;gene_biotype=protein_coding;locus_tag=AD39_RS12185;old_locus_tag=AD39_2456 NZ_JJLH01000032.1 Protein Homology CDS 17643 18239 . + 0 ID=cds-WP_000044711.1;Parent=gene-AD39_RS12185;Dbxref=GenBank:WP_000044711.1;Name=WP_000044711.1;Note=upgraded from regulatory protein to switch DNA invertase;gbkey=CDS;gene=fimE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418733.1;locus_tag=AD39_RS12185;product=type 1 fimbria switch DNA invertase FimE;protein_id=WP_000044711.1;transl_table=11 NZ_JJLH01000032.1 RefSeq gene 18411 18601 . - . ID=gene-AD39_RS29575;Name=AD39_RS29575;end_range=18601,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29575;partial=true NZ_JJLH01000032.1 GeneMarkS-2+ CDS 18411 18601 . - 2 ID=cds-WP_204361754.1;Parent=gene-AD39_RS29575;Dbxref=GenBank:WP_204361754.1;Name=WP_204361754.1;end_range=18601,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS29575;partial=true;product=hypothetical protein;protein_id=WP_204361754.1;transl_table=11 ##sequence-region NZ_JJLH01000033.1 1 21786 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000033.1 RefSeq region 1 21786 . + . ID=NZ_JJLH01000033.1:1..21786;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000033.1 RefSeq gene 21 718 . + . ID=gene-AD39_RS12180;Name=AD39_RS12180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12180;old_locus_tag=AD39_2457 NZ_JJLH01000033.1 Protein Homology CDS 21 270 . + 0 ID=cds-WP_223155668.1-3;Parent=gene-AD39_RS12180;Dbxref=GenBank:WP_223155668.1;Name=WP_223155668.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1;locus_tag=AD39_RS12180;product=IS1-like element IS1A family transposase;protein_id=WP_223155668.1;transl_table=11 NZ_JJLH01000033.1 Protein Homology CDS 270 718 . + 2 ID=cds-WP_223155668.1-3;Parent=gene-AD39_RS12180;Dbxref=GenBank:WP_223155668.1;Name=WP_223155668.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1;locus_tag=AD39_RS12180;product=IS1-like element IS1A family transposase;protein_id=WP_223155668.1;transl_table=11 NZ_JJLH01000033.1 RefSeq pseudogene 1136 2149 . + . ID=gene-AD39_RS0124625;Name=AD39_RS0124625;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0124625;pseudo=true NZ_JJLH01000033.1 Protein Homology CDS 1136 2149 . + 0 ID=cds-AD39_RS0124625;Parent=gene-AD39_RS0124625;Note=frameshifted%3B internal stop;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014543172.1;locus_tag=AD39_RS0124625;product=IS481 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000033.1 RefSeq pseudogene 2219 2364 . - . ID=gene-AD39_RS30070;Name=AD39_RS30070;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30070;partial=true;pseudo=true;start_range=.,2219 NZ_JJLH01000033.1 Protein Homology CDS 2219 2364 . - 0 ID=cds-AD39_RS30070;Parent=gene-AD39_RS30070;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001362728.1;locus_tag=AD39_RS30070;partial=true;product=transposase;pseudo=true;start_range=.,2219;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 2506 3714 . - . ID=gene-AD39_RS12175;Name=AD39_RS12175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12175;old_locus_tag=AD39_2459 NZ_JJLH01000033.1 Protein Homology CDS 2506 3714 . - 0 ID=cds-WP_032283370.1;Parent=gene-AD39_RS12175;Dbxref=GenBank:WP_032283370.1;Name=WP_032283370.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014639418.1;locus_tag=AD39_RS12175;product=acyltransferase;protein_id=WP_032283370.1;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 3726 4355 . - . ID=gene-AD39_RS0124635;Name=aatC;gbkey=Gene;gene=aatC;gene_biotype=protein_coding;locus_tag=AD39_RS0124635 NZ_JJLH01000033.1 Protein Homology CDS 3726 4355 . - 0 ID=cds-WP_011666435.1;Parent=gene-AD39_RS0124635;Dbxref=GenBank:WP_011666435.1;Name=WP_011666435.1;gbkey=CDS;gene=aatC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000621745.1;locus_tag=AD39_RS0124635;product=dispersin export ABC transporter ATP-binding protein AatC;protein_id=WP_011666435.1;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 4348 5169 . - . ID=gene-AD39_RS12170;Name=aatB;gbkey=Gene;gene=aatB;gene_biotype=protein_coding;locus_tag=AD39_RS12170;old_locus_tag=AD39_2460 NZ_JJLH01000033.1 Protein Homology CDS 4348 5169 . - 0 ID=cds-WP_071998418.1;Parent=gene-AD39_RS12170;Dbxref=GenBank:WP_071998418.1;Name=WP_071998418.1;gbkey=CDS;gene=aatB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_032490785.1;locus_tag=AD39_RS12170;product=dispersin export-associated protein AatB;protein_id=WP_071998418.1;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 5066 6304 . - . ID=gene-AD39_RS12165;Name=aatA;gbkey=Gene;gene=aatA;gene_biotype=protein_coding;locus_tag=AD39_RS12165;old_locus_tag=AD39_2461 NZ_JJLH01000033.1 Protein Homology CDS 5066 6304 . - 0 ID=cds-WP_032283373.1;Parent=gene-AD39_RS12165;Dbxref=GenBank:WP_032283373.1;Name=WP_032283373.1;gbkey=CDS;gene=aatA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001216023.1;locus_tag=AD39_RS12165;product=dispersin export ABC transporter outer membrane protein AatA;protein_id=WP_032283373.1;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 6301 7431 . - . ID=gene-AD39_RS12160;Name=aatP;gbkey=Gene;gene=aatP;gene_biotype=protein_coding;locus_tag=AD39_RS12160;old_locus_tag=AD39_2462 NZ_JJLH01000033.1 Protein Homology CDS 6301 7431 . - 0 ID=cds-WP_032178543.1;Parent=gene-AD39_RS12160;Dbxref=GenBank:WP_032178543.1;Name=WP_032178543.1;gbkey=CDS;gene=aatP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000209220.1;locus_tag=AD39_RS12160;product=dispersin export ABC transporter permease subunit AatP;protein_id=WP_032178543.1;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 7597 7740 . - . ID=gene-AD39_RS30190;Name=AD39_RS30190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30190 NZ_JJLH01000033.1 Protein Homology CDS 7597 7740 . - 0 ID=cds-WP_404852720.1;Parent=gene-AD39_RS30190;Dbxref=GenBank:WP_404852720.1;Name=WP_404852720.1;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: protein motif:HMM:NF024729.6;locus_tag=AD39_RS30190;product=IS3 family transposase;protein_id=WP_404852720.1;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 7948 8436 . - . ID=gene-AD39_RS28505;Name=AD39_RS28505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28505;old_locus_tag=AD39_2463 NZ_JJLH01000033.1 Protein Homology CDS 7948 8436 . - 0 ID=cds-WP_077755986.1;Parent=gene-AD39_RS28505;Dbxref=GenBank:WP_077755986.1;Name=WP_077755986.1;Ontology_term=GO:0006310,GO:0015074,GO:0032196,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA,transposition|0032196||IEA;inference=COORDINATES: protein motif:HMM:NF025063.6;locus_tag=AD39_RS28505;product=integrase core domain-containing protein;protein_id=WP_077755986.1;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 8396 8719 . - . ID=gene-AD39_RS30195;Name=AD39_RS30195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30195 NZ_JJLH01000033.1 Protein Homology CDS 8396 8719 . - 0 ID=cds-WP_341746484.1;Parent=gene-AD39_RS30195;Dbxref=GenBank:WP_341746484.1;Name=WP_341746484.1;Ontology_term=GO:0015074;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: protein motif:HMM:NF012870.6;locus_tag=AD39_RS30195;product=DDE-type integrase/transposase/recombinase;protein_id=WP_341746484.1;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 8977 9297 . - . ID=gene-AD39_RS29740;Name=AD39_RS29740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29740;old_locus_tag=AD39_2465 NZ_JJLH01000033.1 Protein Homology CDS 8977 9297 . - 0 ID=cds-WP_096860772.1;Parent=gene-AD39_RS29740;Dbxref=GenBank:WP_096860772.1;Name=WP_096860772.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001370055.1;locus_tag=AD39_RS29740;product=hypothetical protein;protein_id=WP_096860772.1;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 9776 10288 . - . ID=gene-AD39_RS12155;Name=hdaA;gbkey=Gene;gene=hdaA;gene_biotype=protein_coding;locus_tag=AD39_RS12155;old_locus_tag=AD39_2466 NZ_JJLH01000033.1 Protein Homology CDS 9776 10288 . - 0 ID=cds-WP_032283375.1;Parent=gene-AD39_RS12155;Dbxref=GenBank:WP_032283375.1;Name=WP_032283375.1;gbkey=CDS;gene=hdaA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_032492251.1;locus_tag=AD39_RS12155;product=aggregative adherence fimbria 4 major subunit Agg4A/HdaA;protein_id=WP_032283375.1;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 10362 10790 . - . ID=gene-AD39_RS0124650;Name=hdaB;gbkey=Gene;gene=hdaB;gene_biotype=protein_coding;locus_tag=AD39_RS0124650 NZ_JJLH01000033.1 Protein Homology CDS 10362 10790 . - 0 ID=cds-WP_032178539.1;Parent=gene-AD39_RS0124650;Dbxref=GenBank:WP_032178539.1;Name=WP_032178539.1;gbkey=CDS;gene=hdaB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_032261159.1;locus_tag=AD39_RS0124650;product=aggregative adherence fimbria 4 minor subunit Agg4B/HdaB;protein_id=WP_032178539.1;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 10807 13335 . - . ID=gene-AD39_RS12150;Name=hdaC;gbkey=Gene;gene=hdaC;gene_biotype=protein_coding;locus_tag=AD39_RS12150;old_locus_tag=AD39_2467 NZ_JJLH01000033.1 Protein Homology CDS 10807 13335 . - 0 ID=cds-WP_122998933.1;Parent=gene-AD39_RS12150;Dbxref=GenBank:WP_122998933.1;Name=WP_122998933.1;gbkey=CDS;gene=hdaC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_032492250.1;locus_tag=AD39_RS12150;product=aggregative adherence fimbria 4 usher protein Agg4C/HdaC;protein_id=WP_122998933.1;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 13384 14067 . - . ID=gene-AD39_RS12145;Name=hdaD;gbkey=Gene;gene=hdaD;gene_biotype=protein_coding;locus_tag=AD39_RS12145;old_locus_tag=AD39_2468 NZ_JJLH01000033.1 Protein Homology CDS 13384 14067 . - 0 ID=cds-WP_148725049.1;Parent=gene-AD39_RS12145;Dbxref=GenBank:WP_148725049.1;Name=WP_148725049.1;gbkey=CDS;gene=hdaD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_032492249.1;locus_tag=AD39_RS12145;product=aggregative adherence fimbria 4 chaperone Agg4D/HdaD;protein_id=WP_148725049.1;transl_table=11 NZ_JJLH01000033.1 RefSeq pseudogene 14529 15263 . + . ID=gene-AD39_RS0124655;Name=tnpC;gbkey=Gene;gene=tnpC;gene_biotype=pseudogene;locus_tag=AD39_RS0124655;partial=true;pseudo=true;start_range=.,14529 NZ_JJLH01000033.1 Protein Homology CDS 14529 15263 . + 0 ID=cds-AD39_RS0124655;Parent=gene-AD39_RS0124655;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0004803;gbkey=CDS;gene=tnpC;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004201219.1;locus_tag=AD39_RS0124655;partial=true;product=IS66 family transposase;pseudo=true;start_range=.,14529;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 15760 19854 . - . ID=gene-AD39_RS12140;Name=sepA;gbkey=Gene;gene=sepA;gene_biotype=protein_coding;locus_tag=AD39_RS12140;old_locus_tag=AD39_2471 NZ_JJLH01000033.1 Protein Homology CDS 15760 19854 . - 0 ID=cds-WP_032283378.1;Parent=gene-AD39_RS12140;Dbxref=GenBank:WP_032283378.1;Name=WP_032283378.1;gbkey=CDS;gene=sepA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858203.1;locus_tag=AD39_RS12140;product=serine protease autotransporter toxin SepA;protein_id=WP_032283378.1;transl_table=11 NZ_JJLH01000033.1 RefSeq pseudogene 20163 20801 . - . ID=gene-AD39_RS27230;Name=AD39_RS27230;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS27230;pseudo=true NZ_JJLH01000033.1 Protein Homology CDS 20163 20801 . - 0 ID=cds-AD39_RS27230;Parent=gene-AD39_RS27230;Note=frameshifted%3B internal stop;Ontology_term=GO:0006310,GO:0000150,GO:0003677;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001722340.1;locus_tag=AD39_RS27230;product=recombinase family protein;pseudo=true;transl_table=11 NZ_JJLH01000033.1 RefSeq pseudogene 20966 21254 . + . ID=gene-AD39_RS29745;Name=AD39_RS29745;end_range=21254,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29745;partial=true;pseudo=true NZ_JJLH01000033.1 Protein Homology CDS 20966 21254 . + 0 ID=cds-AD39_RS29745;Parent=gene-AD39_RS29745;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=21254,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000124024.1;locus_tag=AD39_RS29745;partial=true;product=DUF4158 domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000033.1 RefSeq gene 21312 21786 . - . ID=gene-AD39_RS12130;Name=AD39_RS12130;end_range=21786,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12130;old_locus_tag=AD39_2474;partial=true NZ_JJLH01000033.1 Protein Homology CDS 21312 21786 . - 1 ID=cds-WP_148725053.1;Parent=gene-AD39_RS12130;Dbxref=GenBank:WP_148725053.1;Name=WP_148725053.1;Ontology_term=GO:0004803;end_range=21786,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612086.1;locus_tag=AD39_RS12130;partial=true;product=IS3 family transposase;protein_id=WP_148725053.1;transl_table=11 ##sequence-region NZ_JJLH01000034.1 1 252852 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000034.1 RefSeq region 1 252852 . + . ID=NZ_JJLH01000034.1:1..252852;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000034.1 RefSeq gene 1 435 . - . ID=gene-AD39_RS12125;Name=AD39_RS12125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12125;old_locus_tag=AD39_2475;partial=true;start_range=.,1 NZ_JJLH01000034.1 Protein Homology CDS 1 435 . - 0 ID=cds-WP_032287587.1;Parent=gene-AD39_RS12125;Dbxref=GenBank:WP_032287587.1;Name=WP_032287587.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309807.1;locus_tag=AD39_RS12125;partial=true;product=DNA-methyltransferase;protein_id=WP_032287587.1;start_range=.,1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 587 784 . - . ID=gene-AD39_RS12120;Name=AD39_RS12120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12120;old_locus_tag=AD39_2476 NZ_JJLH01000034.1 Protein Homology CDS 587 784 . - 0 ID=cds-WP_000917767.1;Parent=gene-AD39_RS12120;Dbxref=GenBank:WP_000917767.1;Name=WP_000917767.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309806.2;locus_tag=AD39_RS12120;product=hypothetical protein;protein_id=WP_000917767.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 1018 1635 . - . ID=gene-AD39_RS0124660;Name=AD39_RS0124660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124660 NZ_JJLH01000034.1 Protein Homology CDS 1018 1635 . - 0 ID=cds-WP_032283388.1;Parent=gene-AD39_RS0124660;Dbxref=GenBank:WP_032283388.1;Name=WP_032283388.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001005105.1;locus_tag=AD39_RS0124660;product=hypothetical protein;protein_id=WP_032283388.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 1702 2094 . - . ID=gene-AD39_RS0124665;Name=AD39_RS0124665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124665 NZ_JJLH01000034.1 Protein Homology CDS 1702 2094 . - 0 ID=cds-WP_032283389.1;Parent=gene-AD39_RS0124665;Dbxref=GenBank:WP_032283389.1;Name=WP_032283389.1;Ontology_term=GO:0060567,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=negative regulation of termination of DNA-templated transcription|0060567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001204796.1;locus_tag=AD39_RS0124665;product=antiterminator Q family protein;protein_id=WP_032283389.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 2112 3101 . - . ID=gene-AD39_RS12115;Name=AD39_RS12115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12115;old_locus_tag=AD39_2477 NZ_JJLH01000034.1 Protein Homology CDS 2112 3101 . - 0 ID=cds-WP_032283452.1;Parent=gene-AD39_RS12115;Dbxref=GenBank:WP_032283452.1;Name=WP_032283452.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001764249.1;locus_tag=AD39_RS12115;product=DUF968 domain-containing protein;protein_id=WP_032283452.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 3153 3410 . - . ID=gene-AD39_RS12110;Name=AD39_RS12110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12110;old_locus_tag=AD39_2478 NZ_JJLH01000034.1 Protein Homology CDS 3153 3410 . - 0 ID=cds-WP_032283390.1;Parent=gene-AD39_RS12110;Dbxref=GenBank:WP_032283390.1;Name=WP_032283390.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009453440.1;locus_tag=AD39_RS12110;product=hypothetical protein;protein_id=WP_032283390.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 3407 4807 . - . ID=gene-AD39_RS12105;Name=AD39_RS12105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12105;old_locus_tag=AD39_2479 NZ_JJLH01000034.1 Protein Homology CDS 3407 4807 . - 0 ID=cds-WP_000203849.1;Parent=gene-AD39_RS12105;Dbxref=GenBank:WP_000203849.1;Name=WP_000203849.1;Ontology_term=GO:0006269,GO:0003677,GO:0003678,GO:0005524,GO:0016887;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=DNA replication%2C synthesis of primer|0006269||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000203847.1;locus_tag=AD39_RS12105;product=replicative DNA helicase;protein_id=WP_000203849.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 4804 5703 . - . ID=gene-AD39_RS12100;Name=AD39_RS12100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12100;old_locus_tag=AD39_2480 NZ_JJLH01000034.1 Protein Homology CDS 4804 5703 . - 0 ID=cds-WP_000988266.1;Parent=gene-AD39_RS12100;Dbxref=GenBank:WP_000988266.1;Name=WP_000988266.1;Ontology_term=GO:0005524;gbkey=CDS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706613.2;locus_tag=AD39_RS12100;product=ATP-binding protein;protein_id=WP_000988266.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 5714 6706 . - . ID=gene-AD39_RS12095;Name=AD39_RS12095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12095;old_locus_tag=AD39_2481 NZ_JJLH01000034.1 Protein Homology CDS 5714 6706 . - 0 ID=cds-WP_000092416.1;Parent=gene-AD39_RS12095;Dbxref=GenBank:WP_000092416.1;Name=WP_000092416.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001551255.1;locus_tag=AD39_RS12095;product=hypothetical protein;protein_id=WP_000092416.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 6703 7002 . - . ID=gene-AD39_RS0124670;Name=AD39_RS0124670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124670 NZ_JJLH01000034.1 Protein Homology CDS 6703 7002 . - 0 ID=cds-WP_000995578.1;Parent=gene-AD39_RS0124670;Dbxref=GenBank:WP_000995578.1;Name=WP_000995578.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000995578.1;locus_tag=AD39_RS0124670;product=hypothetical protein;protein_id=WP_000995578.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 6999 7223 . - . ID=gene-AD39_RS12090;Name=AD39_RS12090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12090;old_locus_tag=AD39_2483 NZ_JJLH01000034.1 Protein Homology CDS 6999 7223 . - 0 ID=cds-WP_000618007.1;Parent=gene-AD39_RS12090;Dbxref=GenBank:WP_000618007.1;Name=WP_000618007.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000621226.1;locus_tag=AD39_RS12090;product=hypothetical protein;protein_id=WP_000618007.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 7220 7414 . - . ID=gene-AD39_RS12085;Name=AD39_RS12085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12085;old_locus_tag=AD39_2484 NZ_JJLH01000034.1 Protein Homology CDS 7220 7414 . - 0 ID=cds-WP_000626792.1;Parent=gene-AD39_RS12085;Dbxref=GenBank:WP_000626792.1;Name=WP_000626792.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000626789.1;locus_tag=AD39_RS12085;product=hypothetical protein;protein_id=WP_000626792.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 7411 8265 . - . ID=gene-AD39_RS12080;Name=AD39_RS12080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12080;old_locus_tag=AD39_2485 NZ_JJLH01000034.1 Protein Homology CDS 7411 8265 . - 0 ID=cds-WP_000587267.1;Parent=gene-AD39_RS12080;Dbxref=GenBank:WP_000587267.1;Name=WP_000587267.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000587267.1;locus_tag=AD39_RS12080;product=Rha family phage regulatory protein;protein_id=WP_000587267.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 8375 9082 . - . ID=gene-AD39_RS12075;Name=AD39_RS12075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12075;old_locus_tag=AD39_2486 NZ_JJLH01000034.1 Protein Homology CDS 8375 9082 . - 0 ID=cds-WP_032283391.1;Parent=gene-AD39_RS12075;Dbxref=GenBank:WP_032283391.1;Name=WP_032283391.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001435006.1;locus_tag=AD39_RS12075;product=Rha family transcriptional regulator;protein_id=WP_032283391.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 9079 9306 . - . ID=gene-AD39_RS29750;Name=AD39_RS29750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29750 NZ_JJLH01000034.1 Protein Homology CDS 9079 9306 . - 0 ID=cds-WP_000177358.1;Parent=gene-AD39_RS29750;Dbxref=GenBank:WP_000177358.1;Name=WP_000177358.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000177358.1;locus_tag=AD39_RS29750;product=hypothetical protein;protein_id=WP_000177358.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 9418 10074 . + . ID=gene-AD39_RS12070;Name=AD39_RS12070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12070;old_locus_tag=AD39_2487 NZ_JJLH01000034.1 Protein Homology CDS 9418 10074 . + 0 ID=cds-WP_000838344.1;Parent=gene-AD39_RS12070;Dbxref=GenBank:WP_000838344.1;Name=WP_000838344.1;Ontology_term=GO:0045892,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015967619.1;locus_tag=AD39_RS12070;product=LexA family protein;protein_id=WP_000838344.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 10178 10681 . + . ID=gene-AD39_RS12065;Name=AD39_RS12065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12065;old_locus_tag=AD39_2488 NZ_JJLH01000034.1 Protein Homology CDS 10178 10681 . + 0 ID=cds-WP_000608404.1;Parent=gene-AD39_RS12065;Dbxref=GenBank:WP_000608404.1;Name=WP_000608404.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001551258.1;locus_tag=AD39_RS12065;product=helix-turn-helix domain-containing protein;protein_id=WP_000608404.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 10969 11175 . + . ID=gene-AD39_RS12060;Name=AD39_RS12060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12060;old_locus_tag=AD39_2489 NZ_JJLH01000034.1 Protein Homology CDS 10969 11175 . + 0 ID=cds-WP_000141093.1;Parent=gene-AD39_RS12060;Dbxref=GenBank:WP_000141093.1;Name=WP_000141093.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000141088.1;locus_tag=AD39_RS12060;product=hypothetical protein;protein_id=WP_000141093.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 11370 11588 . + . ID=gene-AD39_RS12055;Name=AD39_RS12055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12055;old_locus_tag=AD39_2490 NZ_JJLH01000034.1 Protein Homology CDS 11370 11588 . + 0 ID=cds-WP_032286094.1;Parent=gene-AD39_RS12055;Dbxref=GenBank:WP_032286094.1;Name=WP_032286094.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000553976.1;locus_tag=AD39_RS12055;product=hypothetical protein;protein_id=WP_032286094.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 11594 12175 . + . ID=gene-AD39_RS12050;Name=AD39_RS12050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12050;old_locus_tag=AD39_2491 NZ_JJLH01000034.1 Protein Homology CDS 11594 12175 . + 0 ID=cds-WP_001199104.1;Parent=gene-AD39_RS12050;Dbxref=GenBank:WP_001199104.1;Name=WP_001199104.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001199102.1;locus_tag=AD39_RS12050;product=hypothetical protein;protein_id=WP_001199104.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 12424 12741 . + . ID=gene-AD39_RS0124685;Name=AD39_RS0124685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124685 NZ_JJLH01000034.1 Protein Homology CDS 12424 12741 . + 0 ID=cds-WP_000179800.1;Parent=gene-AD39_RS0124685;Dbxref=GenBank:WP_000179800.1;Name=WP_000179800.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000179800.1;locus_tag=AD39_RS0124685;product=DUF4752 family protein;protein_id=WP_000179800.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 12695 13009 . + . ID=gene-AD39_RS12045;Name=AD39_RS12045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12045;old_locus_tag=AD39_2492 NZ_JJLH01000034.1 Protein Homology CDS 12695 13009 . + 0 ID=cds-WP_032283393.1;Parent=gene-AD39_RS12045;Dbxref=GenBank:WP_032283393.1;Name=WP_032283393.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000156552.1;locus_tag=AD39_RS12045;product=hypothetical protein;protein_id=WP_032283393.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 12996 13781 . + . ID=gene-AD39_RS12040;Name=AD39_RS12040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12040;old_locus_tag=AD39_2493 NZ_JJLH01000034.1 Protein Homology CDS 12996 13781 . + 0 ID=cds-WP_032283394.1;Parent=gene-AD39_RS12040;Dbxref=GenBank:WP_032283394.1;Name=WP_032283394.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001559618.1;locus_tag=AD39_RS12040;product=ead/Ea22-like family protein;protein_id=WP_032283394.1;transl_table=11 NZ_JJLH01000034.1 RefSeq pseudogene 13783 13961 . + . ID=gene-AD39_RS29110;Name=AD39_RS29110;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29110;pseudo=true NZ_JJLH01000034.1 Protein Homology CDS 13783 13961 . + 0 ID=cds-AD39_RS29110;Parent=gene-AD39_RS29110;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_305741.1;locus_tag=AD39_RS29110;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000034.1 RefSeq pseudogene 14295 14429 . + . ID=gene-AD39_RS30200;Name=AD39_RS30200;end_range=14429,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30200;partial=true;pseudo=true NZ_JJLH01000034.1 Protein Homology CDS 14295 14429 . + 0 ID=cds-AD39_RS30200;Parent=gene-AD39_RS30200;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=14429,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309545.1;locus_tag=AD39_RS30200;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 14704 14967 . + . ID=gene-AD39_RS12030;Name=AD39_RS12030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12030;old_locus_tag=AD39_2496 NZ_JJLH01000034.1 Protein Homology CDS 14704 14967 . + 0 ID=cds-WP_000224227.1;Parent=gene-AD39_RS12030;Dbxref=GenBank:WP_000224227.1;Name=WP_000224227.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309977.1;locus_tag=AD39_RS12030;product=hypothetical protein;protein_id=WP_000224227.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 14978 15721 . + . ID=gene-AD39_RS12025;Name=AD39_RS12025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12025;old_locus_tag=AD39_2497 NZ_JJLH01000034.1 Protein Homology CDS 14978 15721 . + 0 ID=cds-WP_032172878.1;Parent=gene-AD39_RS12025;Dbxref=GenBank:WP_032172878.1;Name=WP_032172878.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000628767.1;locus_tag=AD39_RS12025;product=DUF551 domain-containing protein;protein_id=WP_032172878.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 15806 16048 . + . ID=gene-AD39_RS0124695;Name=AD39_RS0124695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124695 NZ_JJLH01000034.1 Protein Homology CDS 15806 16048 . + 0 ID=cds-WP_032172879.1;Parent=gene-AD39_RS0124695;Dbxref=GenBank:WP_032172879.1;Name=WP_032172879.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311038.1;locus_tag=AD39_RS0124695;product=DUF4222 domain-containing protein;protein_id=WP_032172879.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 16052 16186 . + . ID=gene-AD39_RS12020;Name=AD39_RS12020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12020;old_locus_tag=AD39_2499 NZ_JJLH01000034.1 Protein Homology CDS 16052 16186 . + 0 ID=cds-WP_001030157.1;Parent=gene-AD39_RS12020;Dbxref=GenBank:WP_001030157.1;Name=WP_001030157.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502644.1;locus_tag=AD39_RS12020;product=hypothetical protein;protein_id=WP_001030157.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 16205 16459 . + . ID=gene-AD39_RS0124700;Name=xisR;gbkey=Gene;gene=xisR;gene_biotype=protein_coding;locus_tag=AD39_RS0124700 NZ_JJLH01000034.1 Protein Homology CDS 16205 16459 . + 0 ID=cds-WP_001193437.1;Parent=gene-AD39_RS0124700;Dbxref=GenBank:WP_001193437.1;Name=WP_001193437.1;gbkey=CDS;gene=xisR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311039.1;locus_tag=AD39_RS0124700;product=excisionase family protein;protein_id=WP_001193437.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 16493 17779 . + . ID=gene-AD39_RS12015;Name=AD39_RS12015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS12015;old_locus_tag=AD39_2501 NZ_JJLH01000034.1 Protein Homology CDS 16493 17779 . + 0 ID=cds-WP_000063640.1;Parent=gene-AD39_RS12015;Dbxref=GenBank:WP_000063640.1;Name=WP_000063640.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311040.1;locus_tag=AD39_RS12015;product=tyrosine-type recombinase/integrase;protein_id=WP_000063640.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 17800 18501 . + . ID=gene-AD39_RS12010;Name=mlrA;gbkey=Gene;gene=mlrA;gene_biotype=protein_coding;locus_tag=AD39_RS12010;old_locus_tag=AD39_2502 NZ_JJLH01000034.1 Protein Homology CDS 17800 18501 . + 0 ID=cds-WP_029208472.1;Parent=gene-AD39_RS12010;Dbxref=GenBank:WP_029208472.1;Name=WP_029208472.1;gbkey=CDS;gene=mlrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416631.1;locus_tag=AD39_RS12010;product=HTH-type transcriptional regulator MlrA;protein_id=WP_029208472.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 18561 18668 . + . ID=gene-AD39_RS0124705;Name=yohO;gbkey=Gene;gene=yohO;gene_biotype=protein_coding;locus_tag=AD39_RS0124705 NZ_JJLH01000034.1 Protein Homology CDS 18561 18668 . + 0 ID=cds-WP_001216963.1;Parent=gene-AD39_RS0124705;Dbxref=GenBank:WP_001216963.1;Name=WP_001216963.1;gbkey=CDS;gene=yohO;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588460.1;locus_tag=AD39_RS0124705;product=protein YohO;protein_id=WP_001216963.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 18649 19380 . - . ID=gene-AD39_RS12005;Name=yehW;gbkey=Gene;gene=yehW;gene_biotype=protein_coding;locus_tag=AD39_RS12005;old_locus_tag=AD39_2503 NZ_JJLH01000034.1 Protein Homology CDS 18649 19380 . - 0 ID=cds-WP_001427820.1;Parent=gene-AD39_RS12005;Dbxref=GenBank:WP_001427820.1;Name=WP_001427820.1;gbkey=CDS;gene=yehW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311042.1;locus_tag=AD39_RS12005;product=glycine betaine ABC transporter permease YehW;protein_id=WP_001427820.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 19385 20311 . - . ID=gene-AD39_RS12000;Name=yehX;gbkey=Gene;gene=yehX;gene_biotype=protein_coding;locus_tag=AD39_RS12000;old_locus_tag=AD39_2504 NZ_JJLH01000034.1 Protein Homology CDS 19385 20311 . - 0 ID=cds-WP_000569327.1;Parent=gene-AD39_RS12000;Dbxref=GenBank:WP_000569327.1;Name=WP_000569327.1;gbkey=CDS;gene=yehX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311043.1;locus_tag=AD39_RS12000;product=glycine betaine ABC transporter ATP binding protein YehX;protein_id=WP_000569327.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 20304 21461 . - . ID=gene-AD39_RS11995;Name=yehY;gbkey=Gene;gene=yehY;gene_biotype=protein_coding;locus_tag=AD39_RS11995;old_locus_tag=AD39_2505 NZ_JJLH01000034.1 Protein Homology CDS 20304 21461 . - 0 ID=cds-WP_032283398.1;Parent=gene-AD39_RS11995;Dbxref=GenBank:WP_032283398.1;Name=WP_032283398.1;gbkey=CDS;gene=yehY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311044.1;locus_tag=AD39_RS11995;product=glycine betaine ABC transporter permease YehY;protein_id=WP_032283398.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 21468 22385 . - . ID=gene-AD39_RS11990;Name=osmF;gbkey=Gene;gene=osmF;gene_biotype=protein_coding;locus_tag=AD39_RS11990;old_locus_tag=AD39_2506 NZ_JJLH01000034.1 Protein Homology CDS 21468 22385 . - 0 ID=cds-WP_001130307.1;Parent=gene-AD39_RS11990;Dbxref=GenBank:WP_001130307.1;Name=WP_001130307.1;Ontology_term=GO:0031460,GO:0022857;gbkey=CDS;gene=osmF;go_function=transmembrane transporter activity|0022857||IEA;go_process=glycine betaine transport|0031460||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416635.1;locus_tag=AD39_RS11990;product=glycine betaine ABC transporter substrate-binding protein OsmF;protein_id=WP_001130307.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 22596 24893 . - . ID=gene-AD39_RS11985;Name=bglX;gbkey=Gene;gene=bglX;gene_biotype=protein_coding;locus_tag=AD39_RS11985;old_locus_tag=AD39_2507 NZ_JJLH01000034.1 Protein Homology CDS 22596 24893 . - 0 ID=cds-WP_000871512.1;Parent=gene-AD39_RS11985;Dbxref=GenBank:WP_000871512.1;Name=WP_000871512.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=bglX;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416636.1;locus_tag=AD39_RS11985;product=beta-glucosidase BglX;protein_id=WP_000871512.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 25089 26804 . + . ID=gene-AD39_RS11980;Name=dld;gbkey=Gene;gene=dld;gene_biotype=protein_coding;locus_tag=AD39_RS11980;old_locus_tag=AD39_2508 NZ_JJLH01000034.1 Protein Homology CDS 25089 26804 . + 0 ID=cds-WP_032250967.1;Parent=gene-AD39_RS11980;Dbxref=GenBank:WP_032250967.1;Name=WP_032250967.1;Ontology_term=GO:0006089,GO:0016901;gbkey=CDS;gene=dld;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C quinone or similar compound as acceptor|0016901||IEA;go_process=lactate metabolic process|0006089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416637.1;locus_tag=AD39_RS11980;product=D-lactate dehydrogenase;protein_id=WP_032250967.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 26899 27774 . - . ID=gene-AD39_RS11975;Name=pbpG;gbkey=Gene;gene=pbpG;gene_biotype=protein_coding;locus_tag=AD39_RS11975;old_locus_tag=AD39_2509 NZ_JJLH01000034.1 Protein Homology CDS 26899 27774 . - 0 ID=cds-WP_044081535.1;Parent=gene-AD39_RS11975;Dbxref=GenBank:WP_044081535.1;Name=WP_044081535.1;Ontology_term=GO:0006508,GO:0009002;gbkey=CDS;gene=pbpG;go_function=serine-type D-Ala-D-Ala carboxypeptidase activity|0009002||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311048.2;locus_tag=AD39_RS11975;product=D-alanyl-D-alanine endopeptidase;protein_id=WP_044081535.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 27948 28535 . - . ID=gene-AD39_RS11970;Name=yohC;gbkey=Gene;gene=yohC;gene_biotype=protein_coding;locus_tag=AD39_RS11970;old_locus_tag=AD39_2511 NZ_JJLH01000034.1 Protein Homology CDS 27948 28535 . - 0 ID=cds-WP_001295454.1;Parent=gene-AD39_RS11970;Dbxref=GenBank:WP_001295454.1;Name=WP_001295454.1;Ontology_term=GO:0016192,GO:0031267;gbkey=CDS;gene=yohC;go_function=small GTPase binding|0031267||IEA;go_process=vesicle-mediated transport|0016192||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014170891.1;locus_tag=AD39_RS11970;product=Yip1 family protein;protein_id=WP_001295454.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 28705 29283 . + . ID=gene-AD39_RS11965;Name=yohD;gbkey=Gene;gene=yohD;gene_biotype=protein_coding;locus_tag=AD39_RS11965;old_locus_tag=AD39_2512 NZ_JJLH01000034.1 Protein Homology CDS 28705 29283 . + 0 ID=cds-WP_001296821.1;Parent=gene-AD39_RS11965;Dbxref=GenBank:WP_001296821.1;Name=WP_001296821.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yohD;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416640.2;locus_tag=AD39_RS11965;product=DedA family protein;protein_id=WP_001296821.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 29413 30174 . - . ID=gene-AD39_RS11960;Name=yohF;gbkey=Gene;gene=yohF;gene_biotype=protein_coding;locus_tag=AD39_RS11960;old_locus_tag=AD39_2513 NZ_JJLH01000034.1 Protein Homology CDS 29413 30174 . - 0 ID=cds-WP_000079524.1;Parent=gene-AD39_RS11960;Dbxref=GenBank:WP_000079524.1;Name=WP_000079524.1;Ontology_term=GO:0016491;gbkey=CDS;gene=yohF;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311051.1;locus_tag=AD39_RS11960;product=SDR family oxidoreductase;protein_id=WP_000079524.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 30227 31663 . - . ID=gene-AD39_RS11955;Name=mdtQ;gbkey=Gene;gene=mdtQ;gene_biotype=protein_coding;locus_tag=AD39_RS11955;old_locus_tag=AD39_2514 NZ_JJLH01000034.1 Protein Homology CDS 30227 31663 . - 0 ID=cds-WP_001482805.1;Parent=gene-AD39_RS11955;Dbxref=GenBank:WP_001482805.1;Name=WP_001482805.1;Ontology_term=GO:0055085,GO:0015562,GO:0016020;gbkey=CDS;gene=mdtQ;go_component=membrane|0016020||IEA;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001583680.1;locus_tag=AD39_RS11955;product=multidrug resistance outer membrane protein MdtQ;protein_id=WP_001482805.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 31887 31970 . + . ID=gene-AD39_RS0124710;Name=yohP;gbkey=Gene;gene=yohP;gene_biotype=protein_coding;locus_tag=AD39_RS0124710 NZ_JJLH01000034.1 Protein Homology CDS 31887 31970 . + 0 ID=cds-WP_000691708.1;Parent=gene-AD39_RS0124710;Dbxref=GenBank:WP_000691708.1;Name=WP_000691708.1;gbkey=CDS;gene=yohP;inference=COORDINATES: protein motif:HMM:NF011345.0;locus_tag=AD39_RS0124710;product=small membrane protein YohP;protein_id=WP_000691708.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 32343 33290 . - . ID=gene-AD39_RS11950;Name=dusC;gbkey=Gene;gene=dusC;gene_biotype=protein_coding;locus_tag=AD39_RS11950;old_locus_tag=AD39_2515 NZ_JJLH01000034.1 Protein Homology CDS 32343 33290 . - 0 ID=cds-WP_001264869.1;Parent=gene-AD39_RS11950;Dbxref=GenBank:WP_001264869.1;Name=WP_001264869.1;Ontology_term=GO:0002943,GO:0017150,GO:0050660;gbkey=CDS;gene=dusC;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA dihydrouridine synthesis|0002943||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416645.1;locus_tag=AD39_RS11950;product=tRNA dihydrouridine(16) synthase DusC;protein_id=WP_001264869.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 33529 33927 . + . ID=gene-AD39_RS11945;Name=yohJ;gbkey=Gene;gene=yohJ;gene_biotype=protein_coding;locus_tag=AD39_RS11945;old_locus_tag=AD39_2516 NZ_JJLH01000034.1 Protein Homology CDS 33529 33927 . + 0 ID=cds-WP_001295452.1;Parent=gene-AD39_RS11945;Dbxref=GenBank:WP_001295452.1;Name=WP_001295452.1;gbkey=CDS;gene=yohJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416646.1;locus_tag=AD39_RS11945;product=CidA/LrgA family protein;protein_id=WP_001295452.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 33924 34619 . + . ID=gene-AD39_RS11940;Name=yohK;gbkey=Gene;gene=yohK;gene_biotype=protein_coding;locus_tag=AD39_RS11940;old_locus_tag=AD39_2517 NZ_JJLH01000034.1 Protein Homology CDS 33924 34619 . + 0 ID=cds-WP_000968208.1;Parent=gene-AD39_RS11940;Dbxref=GenBank:WP_000968208.1;Name=WP_000968208.1;gbkey=CDS;gene=yohK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416647.1;locus_tag=AD39_RS11940;product=CidB/LrgB family autolysis modulator;protein_id=WP_000968208.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 34749 35633 . + . ID=gene-AD39_RS11935;Name=cdd;gbkey=Gene;gene=cdd;gene_biotype=protein_coding;locus_tag=AD39_RS11935;old_locus_tag=AD39_2518 NZ_JJLH01000034.1 Protein Homology CDS 34749 35633 . + 0 ID=cds-WP_000553555.1;Parent=gene-AD39_RS11935;Dbxref=GenBank:WP_000553555.1;Name=WP_000553555.1;Ontology_term=GO:0009972,GO:0004126,GO:0008270;gbkey=CDS;gene=cdd;go_function=cytidine deaminase activity|0004126||IEA,zinc ion binding|0008270||IEA;go_process=cytidine deamination|0009972||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416648.1;locus_tag=AD39_RS11935;product=cytidine deaminase;protein_id=WP_000553555.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 35783 36502 . + . ID=gene-AD39_RS11930;Name=sanA;gbkey=Gene;gene=sanA;gene_biotype=protein_coding;locus_tag=AD39_RS11930;old_locus_tag=AD39_2519 NZ_JJLH01000034.1 Protein Homology CDS 35783 36502 . + 0 ID=cds-WP_000920064.1;Parent=gene-AD39_RS11930;Dbxref=GenBank:WP_000920064.1;Name=WP_000920064.1;gbkey=CDS;gene=sanA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311063.1;locus_tag=AD39_RS11930;product=outer membrane permeability protein SanA;protein_id=WP_000920064.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 36505 36744 . + . ID=gene-AD39_RS11925;Name=yeiS;gbkey=Gene;gene=yeiS;gene_biotype=protein_coding;locus_tag=AD39_RS11925;old_locus_tag=AD39_2520 NZ_JJLH01000034.1 Protein Homology CDS 36505 36744 . + 0 ID=cds-WP_000383096.1;Parent=gene-AD39_RS11925;Dbxref=GenBank:WP_000383096.1;Name=WP_000383096.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yeiS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311064.1;locus_tag=AD39_RS11925;product=DUF2542 family protein;protein_id=WP_000383096.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 37063 38301 . + . ID=gene-AD39_RS11920;Name=preT;gbkey=Gene;gene=preT;gene_biotype=protein_coding;locus_tag=AD39_RS11920;old_locus_tag=AD39_2521 NZ_JJLH01000034.1 Protein Homology CDS 37063 38301 . + 0 ID=cds-WP_001136361.1;Parent=gene-AD39_RS11920;Dbxref=GenBank:WP_001136361.1;Name=WP_001136361.1;gbkey=CDS;gene=preT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416651.1;locus_tag=AD39_RS11920;product=NAD-dependent dihydropyrimidine dehydrogenase subunit PreT;protein_id=WP_001136361.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 38295 39530 . + . ID=gene-AD39_RS11915;Name=preA;gbkey=Gene;gene=preA;gene_biotype=protein_coding;locus_tag=AD39_RS11915;old_locus_tag=AD39_2522 NZ_JJLH01000034.1 Protein Homology CDS 38295 39530 . + 0 ID=cds-WP_000956071.1;Parent=gene-AD39_RS11915;Dbxref=GenBank:WP_000956071.1;Name=WP_000956071.1;Ontology_term=GO:0006210,GO:0006212,GO:0017113;gbkey=CDS;gene=preA;go_function=dihydropyrimidine dehydrogenase (NADP+) activity|0017113||IEA;go_process=thymine catabolic process|0006210||IEA,uracil catabolic process|0006212||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416652.4;locus_tag=AD39_RS11915;product=NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;protein_id=WP_000956071.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 39601 40611 . - . ID=gene-AD39_RS11910;Name=mglC;gbkey=Gene;gene=mglC;gene_biotype=protein_coding;locus_tag=AD39_RS11910;old_locus_tag=AD39_2523 NZ_JJLH01000034.1 Protein Homology CDS 39601 40611 . - 0 ID=cds-WP_001275118.1;Parent=gene-AD39_RS11910;Dbxref=GenBank:WP_001275118.1;Name=WP_001275118.1;Ontology_term=GO:0008643,GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mglC;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129205.1;locus_tag=AD39_RS11910;product=galactose/methyl galactoside ABC transporter permease MglC;protein_id=WP_001275118.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 40627 42147 . - . ID=gene-AD39_RS11905;Name=mglA;gbkey=Gene;gene=mglA;gene_biotype=protein_coding;locus_tag=AD39_RS11905;old_locus_tag=AD39_2524 NZ_JJLH01000034.1 Protein Homology CDS 40627 42147 . - 0 ID=cds-WP_000255032.1;Parent=gene-AD39_RS11905;Dbxref=GenBank:WP_000255032.1;Name=WP_000255032.1;Ontology_term=GO:0008643,GO:0005524,GO:0043211,GO:0016020;gbkey=CDS;gene=mglA;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type carbohydrate transporter activity|0043211||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020883197.1;locus_tag=AD39_RS11905;product=galactose/methyl galactoside ABC transporter ATP-binding protein MglA;protein_id=WP_000255032.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 42208 43206 . - . ID=gene-AD39_RS11900;Name=mglB;gbkey=Gene;gene=mglB;gene_biotype=protein_coding;locus_tag=AD39_RS11900;old_locus_tag=AD39_2525 NZ_JJLH01000034.1 Protein Homology CDS 42208 43206 . - 0 ID=cds-WP_001036964.1;Parent=gene-AD39_RS11900;Dbxref=GenBank:WP_001036964.1;Name=WP_001036964.1;Ontology_term=GO:0030246;gbkey=CDS;gene=mglB;go_function=carbohydrate binding|0030246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416655.1;locus_tag=AD39_RS11900;product=galactose/glucose ABC transporter substrate-binding protein MglB;protein_id=WP_001036964.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 43486 44526 . - . ID=gene-AD39_RS11895;Name=galS;gbkey=Gene;gene=galS;gene_biotype=protein_coding;locus_tag=AD39_RS11895;old_locus_tag=AD39_2526 NZ_JJLH01000034.1 Protein Homology CDS 43486 44526 . - 0 ID=cds-WP_000628660.1;Parent=gene-AD39_RS11895;Dbxref=GenBank:WP_000628660.1;Name=WP_000628660.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=galS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708050.2;locus_tag=AD39_RS11895;product=HTH-type transcriptional regulator GalS;protein_id=WP_000628660.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 44668 45825 . - . ID=gene-AD39_RS11890;Name=yeiB;gbkey=Gene;gene=yeiB;gene_biotype=protein_coding;locus_tag=AD39_RS11890;old_locus_tag=AD39_2527 NZ_JJLH01000034.1 Protein Homology CDS 44668 45825 . - 0 ID=cds-WP_032287576.1;Parent=gene-AD39_RS11890;Dbxref=GenBank:WP_032287576.1;Name=WP_032287576.1;gbkey=CDS;gene=yeiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416657.1;locus_tag=AD39_RS11890;product=DUF418 domain-containing protein YeiB;protein_id=WP_032287576.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 45842 46510 . - . ID=gene-AD39_RS11885;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=AD39_RS11885;old_locus_tag=AD39_2528 NZ_JJLH01000034.1 Protein Homology CDS 45842 46510 . - 0 ID=cds-WP_001139613.1;Parent=gene-AD39_RS11885;Dbxref=GenBank:WP_001139613.1;Name=WP_001139613.1;Ontology_term=GO:0046654,GO:0003934;gbkey=CDS;gene=folE;go_function=GTP cyclohydrolase I activity|0003934||IEA;go_process=tetrahydrofolate biosynthetic process|0046654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311072.1;locus_tag=AD39_RS11885;product=GTP cyclohydrolase I FolE;protein_id=WP_001139613.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 46768 47604 . + . ID=gene-AD39_RS11880;Name=yeiG;gbkey=Gene;gene=yeiG;gene_biotype=protein_coding;locus_tag=AD39_RS11880;old_locus_tag=AD39_2529 NZ_JJLH01000034.1 Protein Homology CDS 46768 47604 . + 0 ID=cds-WP_000425438.1;Parent=gene-AD39_RS11880;Dbxref=GenBank:WP_000425438.1;Name=WP_000425438.1;gbkey=CDS;gene=yeiG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416659.1;locus_tag=AD39_RS11880;product=S-formylglutathione hydrolase;protein_id=WP_000425438.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 47636 49627 . - . ID=gene-AD39_RS11875;Name=cirA;gbkey=Gene;gene=cirA;gene_biotype=protein_coding;locus_tag=AD39_RS11875;old_locus_tag=AD39_2530 NZ_JJLH01000034.1 Protein Homology CDS 47636 49627 . - 0 ID=cds-WP_023156003.1;Parent=gene-AD39_RS11875;Dbxref=GenBank:WP_023156003.1;Name=WP_023156003.1;gbkey=CDS;gene=cirA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416660.1;locus_tag=AD39_RS11875;product=catecholate siderophore receptor CirA;protein_id=WP_023156003.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 49920 51389 . - . ID=gene-AD39_RS11870;Name=lysP;gbkey=Gene;gene=lysP;gene_biotype=protein_coding;locus_tag=AD39_RS11870;old_locus_tag=AD39_2531 NZ_JJLH01000034.1 Protein Homology CDS 49920 51389 . - 0 ID=cds-WP_000253273.1;Parent=gene-AD39_RS11870;Dbxref=GenBank:WP_000253273.1;Name=WP_000253273.1;gbkey=CDS;gene=lysP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416661.1;locus_tag=AD39_RS11870;product=lysine-specific permease;protein_id=WP_000253273.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 51594 52475 . - . ID=gene-AD39_RS11865;Name=yieE;gbkey=Gene;gene=yieE;gene_biotype=protein_coding;locus_tag=AD39_RS11865;old_locus_tag=AD39_2532 NZ_JJLH01000034.1 Protein Homology CDS 51594 52475 . - 0 ID=cds-WP_000548294.1;Parent=gene-AD39_RS11865;Dbxref=GenBank:WP_000548294.1;Name=WP_000548294.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yieE;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311076.1;locus_tag=AD39_RS11865;product=DNA-binding transcriptional regulator YeiE;protein_id=WP_000548294.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 52574 53623 . + . ID=gene-AD39_RS11860;Name=yeiH;gbkey=Gene;gene=yeiH;gene_biotype=protein_coding;locus_tag=AD39_RS11860;old_locus_tag=AD39_2533 NZ_JJLH01000034.1 Protein Homology CDS 52574 53623 . + 0 ID=cds-WP_000182053.1;Parent=gene-AD39_RS11860;Dbxref=GenBank:WP_000182053.1;Name=WP_000182053.1;gbkey=CDS;gene=yeiH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311077.1;locus_tag=AD39_RS11860;product=YeiH family protein;protein_id=WP_000182053.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 53697 54554 . + . ID=gene-AD39_RS11855;Name=nfo;gbkey=Gene;gene=nfo;gene_biotype=protein_coding;locus_tag=AD39_RS11855;old_locus_tag=AD39_2534 NZ_JJLH01000034.1 Protein Homology CDS 53697 54554 . + 0 ID=cds-WP_000873890.1;Parent=gene-AD39_RS11855;Dbxref=GenBank:WP_000873890.1;Name=WP_000873890.1;Ontology_term=GO:0006281,GO:0003677,GO:0008270;gbkey=CDS;gene=nfo;go_function=DNA binding|0003677||IEA,zinc ion binding|0008270||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311078.1;locus_tag=AD39_RS11855;product=deoxyribonuclease IV;protein_id=WP_000873890.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 54557 55645 . + . ID=gene-AD39_RS11850;Name=yeiI;gbkey=Gene;gene=yeiI;gene_biotype=protein_coding;locus_tag=AD39_RS11850;old_locus_tag=AD39_2535 NZ_JJLH01000034.1 Protein Homology CDS 54557 55645 . + 0 ID=cds-WP_001065002.1;Parent=gene-AD39_RS11850;Dbxref=GenBank:WP_001065002.1;Name=WP_001065002.1;gbkey=CDS;gene=yeiI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416665.1;locus_tag=AD39_RS11850;product=sugar kinase;protein_id=WP_001065002.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 55701 56951 . - . ID=gene-AD39_RS11845;Name=nupX;gbkey=Gene;gene=nupX;gene_biotype=protein_coding;locus_tag=AD39_RS11845;old_locus_tag=AD39_2536 NZ_JJLH01000034.1 Protein Homology CDS 55701 56951 . - 0 ID=cds-WP_000382938.1;Parent=gene-AD39_RS11845;Dbxref=GenBank:WP_000382938.1;Name=WP_000382938.1;Ontology_term=GO:1901642,GO:0005337,GO:0015293,GO:0005886,GO:0016020;gbkey=CDS;gene=nupX;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=nucleoside transmembrane transporter activity|0005337||IEA,symporter activity|0015293||IEA;go_process=nucleoside transmembrane transport|1901642||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416666.1;locus_tag=AD39_RS11845;product=NupC/NupG family nucleoside CNT transporter;protein_id=WP_000382938.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 57051 57992 . - . ID=gene-AD39_RS11840;Name=rihB;gbkey=Gene;gene=rihB;gene_biotype=protein_coding;locus_tag=AD39_RS11840;old_locus_tag=AD39_2537 NZ_JJLH01000034.1 Protein Homology CDS 57051 57992 . - 0 ID=cds-WP_032287577.1;Parent=gene-AD39_RS11840;Dbxref=GenBank:WP_032287577.1;Name=WP_032287577.1;gbkey=CDS;gene=rihB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416667.1;locus_tag=AD39_RS11840;product=ribosylpyrimidine nucleosidase;protein_id=WP_032287577.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 58122 58820 . + . ID=gene-AD39_RS11835;Name=yeiL;gbkey=Gene;gene=yeiL;gene_biotype=protein_coding;locus_tag=AD39_RS11835;old_locus_tag=AD39_2538 NZ_JJLH01000034.1 Protein Homology CDS 58122 58820 . + 0 ID=cds-WP_000658579.1;Parent=gene-AD39_RS11835;Dbxref=GenBank:WP_000658579.1;Name=WP_000658579.1;gbkey=CDS;gene=yeiL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311082.4;locus_tag=AD39_RS11835;product=transcriptional regulator YeiL;protein_id=WP_000658579.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 58888 60138 . - . ID=gene-AD39_RS11830;Name=psuT;gbkey=Gene;gene=psuT;gene_biotype=protein_coding;locus_tag=AD39_RS11830;old_locus_tag=AD39_2539 NZ_JJLH01000034.1 Protein Homology CDS 58888 60138 . - 0 ID=cds-WP_000353878.1;Parent=gene-AD39_RS11830;Dbxref=GenBank:WP_000353878.1;Name=WP_000353878.1;Ontology_term=GO:1901642,GO:0005337,GO:0015293,GO:0005886,GO:0016020;gbkey=CDS;gene=psuT;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=nucleoside transmembrane transporter activity|0005337||IEA,symporter activity|0015293||IEA;go_process=nucleoside transmembrane transport|1901642||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416669.1;locus_tag=AD39_RS11830;product=NupC/NupG family nucleoside CNT transporter;protein_id=WP_000353878.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 60232 61170 . - . ID=gene-AD39_RS11825;Name=psuG;gbkey=Gene;gene=psuG;gene_biotype=protein_coding;locus_tag=AD39_RS11825;old_locus_tag=AD39_2540 NZ_JJLH01000034.1 Protein Homology CDS 60232 61170 . - 0 ID=cds-WP_001292464.1;Parent=gene-AD39_RS11825;Dbxref=GenBank:WP_001292464.1;Name=WP_001292464.1;gbkey=CDS;gene=psuG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708062.1;locus_tag=AD39_RS11825;product=pseudouridine-5'-phosphate glycosidase;protein_id=WP_001292464.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 61158 62099 . - . ID=gene-AD39_RS11820;Name=psuK;gbkey=Gene;gene=psuK;gene_biotype=protein_coding;locus_tag=AD39_RS11820;old_locus_tag=AD39_2541 NZ_JJLH01000034.1 Protein Homology CDS 61158 62099 . - 0 ID=cds-WP_001208138.1;Parent=gene-AD39_RS11820;Dbxref=GenBank:WP_001208138.1;Name=WP_001208138.1;gbkey=CDS;gene=psuK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416671.1;locus_tag=AD39_RS11820;product=pseudouridine kinase;protein_id=WP_001208138.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 62523 64214 . - . ID=gene-AD39_RS11815;Name=fruA;gbkey=Gene;gene=fruA;gene_biotype=protein_coding;locus_tag=AD39_RS11815;old_locus_tag=AD39_2542 NZ_JJLH01000034.1 Protein Homology CDS 62523 64214 . - 0 ID=cds-WP_001399129.1;Parent=gene-AD39_RS11815;Dbxref=GenBank:WP_001399129.1;Name=WP_001399129.1;Ontology_term=GO:0009401,GO:0008982,GO:0022877;gbkey=CDS;gene=fruA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708064.1;locus_tag=AD39_RS11815;product=PTS fructose transporter subunit IIBC;protein_id=WP_001399129.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 64231 65169 . - . ID=gene-AD39_RS11810;Name=fruK;gbkey=Gene;gene=fruK;gene_biotype=protein_coding;locus_tag=AD39_RS11810;old_locus_tag=AD39_2543 NZ_JJLH01000034.1 Protein Homology CDS 64231 65169 . - 0 ID=cds-WP_000091263.1;Parent=gene-AD39_RS11810;Dbxref=GenBank:WP_000091263.1;Name=WP_000091263.1;Ontology_term=GO:0008662,GO:0016773;gbkey=CDS;gene=fruK;go_function=1-phosphofructokinase activity|0008662||IEA,phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311087.1;locus_tag=AD39_RS11810;product=1-phosphofructokinase;protein_id=WP_000091263.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 65169 66299 . - . ID=gene-AD39_RS11805;Name=fruB;gbkey=Gene;gene=fruB;gene_biotype=protein_coding;locus_tag=AD39_RS11805;old_locus_tag=AD39_2544 NZ_JJLH01000034.1 Protein Homology CDS 65169 66299 . - 0 ID=cds-WP_000487246.1;Parent=gene-AD39_RS11805;Dbxref=GenBank:WP_000487246.1;Name=WP_000487246.1;gbkey=CDS;gene=fruB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311088.1;locus_tag=AD39_RS11805;product=fused PTS fructose transporter subunit IIA/HPr protein;protein_id=WP_000487246.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 66667 67848 . + . ID=gene-AD39_RS11800;Name=setB;gbkey=Gene;gene=setB;gene_biotype=protein_coding;locus_tag=AD39_RS11800;old_locus_tag=AD39_2546 NZ_JJLH01000034.1 Protein Homology CDS 66667 67848 . + 0 ID=cds-WP_032283399.1;Parent=gene-AD39_RS11800;Dbxref=GenBank:WP_032283399.1;Name=WP_032283399.1;Ontology_term=GO:0008643,GO:0055085,GO:0005351,GO:0022857,GO:0016020;gbkey=CDS;gene=setB;go_component=membrane|0016020||IEA;go_function=carbohydrate:proton symporter activity|0005351||IEA,transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311089.1;locus_tag=AD39_RS11800;product=sugar efflux transporter SetB;protein_id=WP_032283399.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 67845 68099 . - . ID=gene-AD39_RS0124730;Name=yeiW;gbkey=Gene;gene=yeiW;gene_biotype=protein_coding;locus_tag=AD39_RS0124730;old_locus_tag=AD39_2547 NZ_JJLH01000034.1 Protein Homology CDS 67845 68099 . - 0 ID=cds-WP_001349348.1;Parent=gene-AD39_RS0124730;Dbxref=GenBank:WP_001349348.1;Name=WP_001349348.1;Ontology_term=GO:0051536;gbkey=CDS;gene=yeiW;go_function=iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588461.1;locus_tag=AD39_RS0124730;product=YkgJ family cysteine cluster protein;protein_id=WP_001349348.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 68254 68826 . + . ID=gene-AD39_RS11795;Name=yeiP;gbkey=Gene;gene=yeiP;gene_biotype=protein_coding;locus_tag=AD39_RS11795;old_locus_tag=AD39_2549 NZ_JJLH01000034.1 Protein Homology CDS 68254 68826 . + 0 ID=cds-WP_001136827.1;Parent=gene-AD39_RS11795;Dbxref=GenBank:WP_001136827.1;Name=WP_001136827.1;Ontology_term=GO:0006414,GO:0003746;gbkey=CDS;gene=yeiP;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007750416.1;locus_tag=AD39_RS11795;product=elongation factor P-like protein YeiP;protein_id=WP_001136827.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 69049 70515 . + . ID=gene-AD39_RS11790;Name=yeiQ;gbkey=Gene;gene=yeiQ;gene_biotype=protein_coding;locus_tag=AD39_RS11790;old_locus_tag=AD39_2550 NZ_JJLH01000034.1 Protein Homology CDS 69049 70515 . + 0 ID=cds-WP_000848214.1;Parent=gene-AD39_RS11790;Dbxref=GenBank:WP_000848214.1;Name=WP_000848214.1;Ontology_term=GO:0016616;gbkey=CDS;gene=yeiQ;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416677.1;locus_tag=AD39_RS11790;product=mannitol dehydrogenase family protein;protein_id=WP_000848214.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 70633 71619 . + . ID=gene-AD39_RS11785;Name=yeiR;gbkey=Gene;gene=yeiR;gene_biotype=protein_coding;locus_tag=AD39_RS11785;old_locus_tag=AD39_2551 NZ_JJLH01000034.1 Protein Homology CDS 70633 71619 . + 0 ID=cds-WP_032287578.1;Parent=gene-AD39_RS11785;Dbxref=GenBank:WP_032287578.1;Name=WP_032287578.1;gbkey=CDS;gene=yeiR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708072.1;locus_tag=AD39_RS11785;product=zinc-binding GTPase YeiR;protein_id=WP_032287578.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 71658 72371 . + . ID=gene-AD39_RS11780;Name=lpxT;gbkey=Gene;gene=lpxT;gene_biotype=protein_coding;locus_tag=AD39_RS11780;old_locus_tag=AD39_2552 NZ_JJLH01000034.1 Protein Homology CDS 71658 72371 . + 0 ID=cds-WP_001298785.1;Parent=gene-AD39_RS11780;Dbxref=GenBank:WP_001298785.1;Name=WP_001298785.1;gbkey=CDS;gene=lpxT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311093.2;locus_tag=AD39_RS11780;product=Kdo(2)-lipid A phosphotransferase;protein_id=WP_001298785.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 72783 73349 . + . ID=gene-AD39_RS0124735;Name=mepS;gbkey=Gene;gene=mepS;gene_biotype=protein_coding;locus_tag=AD39_RS0124735;old_locus_tag=AD39_2553 NZ_JJLH01000034.1 Protein Homology CDS 72783 73349 . + 0 ID=cds-WP_000241011.1;Parent=gene-AD39_RS0124735;Dbxref=GenBank:WP_000241011.1;Name=WP_000241011.1;gbkey=CDS;gene=mepS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311094.1;locus_tag=AD39_RS0124735;product=bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase;protein_id=WP_000241011.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 73530 75086 . + . ID=gene-AD39_RS11775;Name=pdeN;gbkey=Gene;gene=pdeN;gene_biotype=protein_coding;locus_tag=AD39_RS11775;old_locus_tag=AD39_2554 NZ_JJLH01000034.1 Protein Homology CDS 73530 75086 . + 0 ID=cds-WP_000470576.1;Parent=gene-AD39_RS11775;Dbxref=GenBank:WP_000470576.1;Name=WP_000470576.1;gbkey=CDS;gene=pdeN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416681.1;locus_tag=AD39_RS11775;product=cyclic di-GMP phosphodiesterase;protein_id=WP_000470576.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 75168 76982 . + . ID=gene-AD39_RS11770;Name=yejA;gbkey=Gene;gene=yejA;gene_biotype=protein_coding;locus_tag=AD39_RS11770;old_locus_tag=AD39_2555 NZ_JJLH01000034.1 Protein Homology CDS 75168 76982 . + 0 ID=cds-WP_001298777.1;Parent=gene-AD39_RS11770;Dbxref=GenBank:WP_001298777.1;Name=WP_001298777.1;gbkey=CDS;gene=yejA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311096.2;locus_tag=AD39_RS11770;product=extracellular solute-binding protein;protein_id=WP_001298777.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 76983 78077 . + . ID=gene-AD39_RS11765;Name=yejB;gbkey=Gene;gene=yejB;gene_biotype=protein_coding;locus_tag=AD39_RS11765;old_locus_tag=AD39_2556 NZ_JJLH01000034.1 Protein Homology CDS 76983 78077 . + 0 ID=cds-WP_000501584.1;Parent=gene-AD39_RS11765;Dbxref=GenBank:WP_000501584.1;Name=WP_000501584.1;gbkey=CDS;gene=yejB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311097.1;locus_tag=AD39_RS11765;product=microcin C ABC transporter permease YejB;protein_id=WP_000501584.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 78077 79102 . + . ID=gene-AD39_RS11760;Name=yejE;gbkey=Gene;gene=yejE;gene_biotype=protein_coding;locus_tag=AD39_RS11760;old_locus_tag=AD39_2557 NZ_JJLH01000034.1 Protein Homology CDS 78077 79102 . + 0 ID=cds-WP_032283400.1;Parent=gene-AD39_RS11760;Dbxref=GenBank:WP_032283400.1;Name=WP_032283400.1;gbkey=CDS;gene=yejE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708078.1;locus_tag=AD39_RS11760;product=ABC transporter permease;protein_id=WP_032283400.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 79104 80693 . + . ID=gene-AD39_RS11755;Name=yejF;gbkey=Gene;gene=yejF;gene_biotype=protein_coding;locus_tag=AD39_RS11755;old_locus_tag=AD39_2558 NZ_JJLH01000034.1 Protein Homology CDS 79104 80693 . + 0 ID=cds-WP_000194940.1;Parent=gene-AD39_RS11755;Dbxref=GenBank:WP_000194940.1;Name=WP_000194940.1;Ontology_term=GO:0006810,GO:0000166,GO:0005524;gbkey=CDS;gene=yejF;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416685.1;locus_tag=AD39_RS11755;product=microcin C ABC transporter ATP-binding protein YejF;protein_id=WP_000194940.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 80697 81041 . - . ID=gene-AD39_RS11750;Name=yejG;gbkey=Gene;gene=yejG;gene_biotype=protein_coding;locus_tag=AD39_RS11750;old_locus_tag=AD39_2559 NZ_JJLH01000034.1 Protein Homology CDS 80697 81041 . - 0 ID=cds-WP_000202798.1;Parent=gene-AD39_RS11750;Dbxref=GenBank:WP_000202798.1;Name=WP_000202798.1;gbkey=CDS;gene=yejG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416686.1;locus_tag=AD39_RS11750;product=YejG family protein;protein_id=WP_000202798.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 81374 82564 . - . ID=gene-AD39_RS11745;Name=bcr;gbkey=Gene;gene=bcr;gene_biotype=protein_coding;locus_tag=AD39_RS11745;old_locus_tag=AD39_2560 NZ_JJLH01000034.1 Protein Homology CDS 81374 82564 . - 0 ID=cds-WP_000213361.1;Parent=gene-AD39_RS11745;Dbxref=GenBank:WP_000213361.1;Name=WP_000213361.1;gbkey=CDS;gene=bcr;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416687.1;locus_tag=AD39_RS11745;product=multidrug efflux MFS transporter Bcr;protein_id=WP_000213361.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 82592 83287 . - . ID=gene-AD39_RS11740;Name=rsuA;gbkey=Gene;gene=rsuA;gene_biotype=protein_coding;locus_tag=AD39_RS11740;old_locus_tag=AD39_2561 NZ_JJLH01000034.1 Protein Homology CDS 82592 83287 . - 0 ID=cds-WP_001234850.1;Parent=gene-AD39_RS11740;Dbxref=GenBank:WP_001234850.1;Name=WP_001234850.1;gbkey=CDS;gene=rsuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311102.1;locus_tag=AD39_RS11740;product=16S rRNA pseudouridine(516) synthase RsuA;protein_id=WP_001234850.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 83436 85196 . + . ID=gene-AD39_RS11735;Name=radD;gbkey=Gene;gene=radD;gene_biotype=protein_coding;locus_tag=AD39_RS11735;old_locus_tag=AD39_2562 NZ_JJLH01000034.1 Protein Homology CDS 83436 85196 . + 0 ID=cds-WP_001374227.1;Parent=gene-AD39_RS11735;Dbxref=GenBank:WP_001374227.1;Name=WP_001374227.1;Ontology_term=GO:0003676,GO:0004386,GO:0005524,GO:0016887;gbkey=CDS;gene=radD;go_function=nucleic acid binding|0003676||IEA,helicase activity|0004386||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708083.1;locus_tag=AD39_RS11735;product=DEAD/DEAH box helicase;protein_id=WP_001374227.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 85321 85605 . + . ID=gene-AD39_RS11730;Name=rplY;gbkey=Gene;gene=rplY;gene_biotype=protein_coding;locus_tag=AD39_RS11730;old_locus_tag=AD39_2563 NZ_JJLH01000034.1 Protein Homology CDS 85321 85605 . + 0 ID=cds-WP_000494183.1;Parent=gene-AD39_RS11730;Dbxref=GenBank:WP_000494183.1;Name=WP_000494183.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplY;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000494192.1;locus_tag=AD39_RS11730;product=50S ribosomal protein L25;protein_id=WP_000494183.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 85743 86750 . - . ID=gene-AD39_RS11725;Name=yejK;gbkey=Gene;gene=yejK;gene_biotype=protein_coding;locus_tag=AD39_RS11725;old_locus_tag=AD39_2565 NZ_JJLH01000034.1 Protein Homology CDS 85743 86750 . - 0 ID=cds-WP_032283401.1;Parent=gene-AD39_RS11725;Dbxref=GenBank:WP_032283401.1;Name=WP_032283401.1;Ontology_term=GO:0009295;gbkey=CDS;gene=yejK;go_component=nucleoid|0009295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311105.1;locus_tag=AD39_RS11725;product=nucleoid-associated protein YejK;protein_id=WP_032283401.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 86932 87159 . + . ID=gene-AD39_RS11720;Name=yejL;gbkey=Gene;gene=yejL;gene_biotype=protein_coding;locus_tag=AD39_RS11720;old_locus_tag=AD39_2567 NZ_JJLH01000034.1 Protein Homology CDS 86932 87159 . + 0 ID=cds-WP_001135667.1;Parent=gene-AD39_RS11720;Dbxref=GenBank:WP_001135667.1;Name=WP_001135667.1;gbkey=CDS;gene=yejL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311106.1;locus_tag=AD39_RS11720;product=YejL family protein;protein_id=WP_001135667.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 87179 88939 . + . ID=gene-AD39_RS11715;Name=yejM;gbkey=Gene;gene=yejM;gene_biotype=protein_coding;locus_tag=AD39_RS11715;old_locus_tag=AD39_2568 NZ_JJLH01000034.1 Protein Homology CDS 87179 88939 . + 0 ID=cds-WP_000256200.1;Parent=gene-AD39_RS11715;Dbxref=GenBank:WP_000256200.1;Name=WP_000256200.1;Ontology_term=GO:0008484;gbkey=CDS;gene=yejM;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311107.1;locus_tag=AD39_RS11715;product=LPS biosynthesis-modulating metalloenzyme YejM;protein_id=WP_000256200.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 89014 89090 . + . ID=gene-AD39_RS11710;Name=AD39_RS11710;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS11710;old_locus_tag=AD39_2569 NZ_JJLH01000034.1 tRNAscan-SE tRNA 89014 89090 . + . ID=rna-AD39_RS11710;Parent=gene-AD39_RS11710;anticodon=(pos:89048..89050);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS11710;product=tRNA-Pro NZ_JJLH01000034.1 tRNAscan-SE exon 89014 89090 . + . ID=exon-AD39_RS11710-1;Parent=rna-AD39_RS11710;anticodon=(pos:89048..89050);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS11710;product=tRNA-Pro NZ_JJLH01000034.1 RefSeq pseudogene 89194 91785 . - . ID=gene-AD39_RS11700;Name=yejO;gbkey=Gene;gene=yejO;gene_biotype=pseudogene;locus_tag=AD39_RS11700;old_locus_tag=AD39_2572;pseudo=true NZ_JJLH01000034.1 Protein Homology CDS 89194 91785 . - 0 ID=cds-AD39_RS11700;Parent=gene-AD39_RS11700;Note=internal stop;gbkey=CDS;gene=yejO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311108.2;locus_tag=AD39_RS11700;product=autotransporter YejO;pseudo=true;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 92105 92752 . + . ID=gene-AD39_RS11695;Name=narP;gbkey=Gene;gene=narP;gene_biotype=protein_coding;locus_tag=AD39_RS11695;old_locus_tag=AD39_2573 NZ_JJLH01000034.1 Protein Homology CDS 92105 92752 . + 0 ID=cds-WP_001113637.1;Parent=gene-AD39_RS11695;Dbxref=GenBank:WP_001113637.1;Name=WP_001113637.1;gbkey=CDS;gene=narP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311109.1;locus_tag=AD39_RS11695;product=nitrate/nitrite response regulator protein NarP;protein_id=WP_001113637.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 92787 93839 . - . ID=gene-AD39_RS11690;Name=ccmH;gbkey=Gene;gene=ccmH;gene_biotype=protein_coding;locus_tag=AD39_RS11690;old_locus_tag=AD39_2574 NZ_JJLH01000034.1 Protein Homology CDS 92787 93839 . - 0 ID=cds-WP_001211587.1;Parent=gene-AD39_RS11690;Dbxref=GenBank:WP_001211587.1;Name=WP_001211587.1;gbkey=CDS;gene=ccmH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416698.1;locus_tag=AD39_RS11690;product=cytochrome c-type biogenesis thiol:disulfide oxidoreductase CcmH;protein_id=WP_001211587.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 93836 94393 . - . ID=gene-AD39_RS11685;Name=dsbE;gbkey=Gene;gene=dsbE;gene_biotype=protein_coding;locus_tag=AD39_RS11685;old_locus_tag=AD39_2575 NZ_JJLH01000034.1 Protein Homology CDS 93836 94393 . - 0 ID=cds-WP_000824439.1;Parent=gene-AD39_RS11685;Dbxref=GenBank:WP_000824439.1;Name=WP_000824439.1;gbkey=CDS;gene=dsbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311111.1;locus_tag=AD39_RS11685;product=thiol:disulfide interchange protein DsbE;protein_id=WP_000824439.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 94390 96333 . - . ID=gene-AD39_RS11680;Name=ccmF;gbkey=Gene;gene=ccmF;gene_biotype=protein_coding;locus_tag=AD39_RS11680;old_locus_tag=AD39_2576 NZ_JJLH01000034.1 Protein Homology CDS 94390 96333 . - 0 ID=cds-WP_000982447.1;Parent=gene-AD39_RS11680;Dbxref=GenBank:WP_000982447.1;Name=WP_000982447.1;gbkey=CDS;gene=ccmF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416700.1;locus_tag=AD39_RS11680;product=cytochrome c-type biogenesis heme lyase CcmF;protein_id=WP_000982447.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 96330 96809 . - . ID=gene-AD39_RS11675;Name=ccmE;gbkey=Gene;gene=ccmE;gene_biotype=protein_coding;locus_tag=AD39_RS11675;old_locus_tag=AD39_2577 NZ_JJLH01000034.1 Protein Homology CDS 96330 96809 . - 0 ID=cds-WP_001026418.1;Parent=gene-AD39_RS11675;Dbxref=GenBank:WP_001026418.1;Name=WP_001026418.1;gbkey=CDS;gene=ccmE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311113.1;locus_tag=AD39_RS11675;product=cytochrome c maturation protein CcmE;protein_id=WP_001026418.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 96806 97015 . - . ID=gene-AD39_RS11670;Name=ccmD;gbkey=Gene;gene=ccmD;gene_biotype=protein_coding;locus_tag=AD39_RS11670;old_locus_tag=AD39_2578 NZ_JJLH01000034.1 Protein Homology CDS 96806 97015 . - 0 ID=cds-WP_000186540.1;Parent=gene-AD39_RS11670;Dbxref=GenBank:WP_000186540.1;Name=WP_000186540.1;Ontology_term=GO:0015886,GO:0017004,GO:0016020;gbkey=CDS;gene=ccmD;go_component=membrane|0016020||IEA;go_process=heme transport|0015886||IEA,cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311114.1;locus_tag=AD39_RS11670;product=heme exporter protein CcmD;protein_id=WP_000186540.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 97012 97749 . - . ID=gene-AD39_RS11665;Name=ccmC;gbkey=Gene;gene=ccmC;gene_biotype=protein_coding;locus_tag=AD39_RS11665;old_locus_tag=AD39_2579 NZ_JJLH01000034.1 Protein Homology CDS 97012 97749 . - 0 ID=cds-WP_001295447.1;Parent=gene-AD39_RS11665;Dbxref=GenBank:WP_001295447.1;Name=WP_001295447.1;gbkey=CDS;gene=ccmC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311115.1;locus_tag=AD39_RS11665;product=heme exporter protein CcmC;protein_id=WP_001295447.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 97791 98453 . - . ID=gene-AD39_RS11660;Name=ccmB;gbkey=Gene;gene=ccmB;gene_biotype=protein_coding;locus_tag=AD39_RS11660;old_locus_tag=AD39_2580 NZ_JJLH01000034.1 Protein Homology CDS 97791 98453 . - 0 ID=cds-WP_000971730.1;Parent=gene-AD39_RS11660;Dbxref=GenBank:WP_000971730.1;Name=WP_000971730.1;Ontology_term=GO:0015886,GO:0015232;gbkey=CDS;gene=ccmB;go_function=heme transmembrane transporter activity|0015232||IEA;go_process=heme transport|0015886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311116.1;locus_tag=AD39_RS11660;product=heme exporter protein CcmB;protein_id=WP_000971730.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 98450 99073 . - . ID=gene-AD39_RS11655;Name=ccmA;gbkey=Gene;gene=ccmA;gene_biotype=protein_coding;locus_tag=AD39_RS11655;old_locus_tag=AD39_2581 NZ_JJLH01000034.1 Protein Homology CDS 98450 99073 . - 0 ID=cds-WP_000525587.1;Parent=gene-AD39_RS11655;Dbxref=GenBank:WP_000525587.1;Name=WP_000525587.1;Ontology_term=GO:0017004,GO:0005524,GO:0022857;gbkey=CDS;gene=ccmA;go_function=ATP binding|0005524||IEA,transmembrane transporter activity|0022857||IEA;go_process=cytochrome complex assembly|0017004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416705.2;locus_tag=AD39_RS11655;product=cytochrome c biogenesis heme-transporting ATPase CcmA;protein_id=WP_000525587.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 99086 99688 . - . ID=gene-AD39_RS11650;Name=napC;gbkey=Gene;gene=napC;gene_biotype=protein_coding;locus_tag=AD39_RS11650;old_locus_tag=AD39_2582 NZ_JJLH01000034.1 Protein Homology CDS 99086 99688 . - 0 ID=cds-WP_000528376.1;Parent=gene-AD39_RS11650;Dbxref=GenBank:WP_000528376.1;Name=WP_000528376.1;gbkey=CDS;gene=napC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311118.1;locus_tag=AD39_RS11650;product=cytochrome c-type protein NapC;protein_id=WP_000528376.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 99698 100147 . - . ID=gene-AD39_RS11645;Name=napB;gbkey=Gene;gene=napB;gene_biotype=protein_coding;locus_tag=AD39_RS11645;old_locus_tag=AD39_2583 NZ_JJLH01000034.1 Protein Homology CDS 99698 100147 . - 0 ID=cds-WP_000835177.1;Parent=gene-AD39_RS11645;Dbxref=GenBank:WP_000835177.1;Name=WP_000835177.1;gbkey=CDS;gene=napB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311119.2;locus_tag=AD39_RS11645;product=nitrate reductase cytochrome c-type subunit;protein_id=WP_000835177.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 100144 101007 . - . ID=gene-AD39_RS11640;Name=napH;gbkey=Gene;gene=napH;gene_biotype=protein_coding;locus_tag=AD39_RS11640;old_locus_tag=AD39_2584 NZ_JJLH01000034.1 Protein Homology CDS 100144 101007 . - 0 ID=cds-WP_000013506.1;Parent=gene-AD39_RS11640;Dbxref=GenBank:WP_000013506.1;Name=WP_000013506.1;gbkey=CDS;gene=napH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416708.1;locus_tag=AD39_RS11640;product=quinol dehydrogenase ferredoxin subunit NapH;protein_id=WP_000013506.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 100994 101689 . - . ID=gene-AD39_RS11635;Name=napG;gbkey=Gene;gene=napG;gene_biotype=protein_coding;locus_tag=AD39_RS11635;old_locus_tag=AD39_2585 NZ_JJLH01000034.1 Protein Homology CDS 100994 101689 . - 0 ID=cds-WP_000091291.1;Parent=gene-AD39_RS11635;Dbxref=GenBank:WP_000091291.1;Name=WP_000091291.1;gbkey=CDS;gene=napG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416709.1;locus_tag=AD39_RS11635;product=ferredoxin-type protein NapG;protein_id=WP_000091291.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 101696 104182 . - . ID=gene-AD39_RS11630;Name=napA;gbkey=Gene;gene=napA;gene_biotype=protein_coding;locus_tag=AD39_RS11630;old_locus_tag=AD39_2586 NZ_JJLH01000034.1 Protein Homology CDS 101696 104182 . - 0 ID=cds-WP_000778057.1;Parent=gene-AD39_RS11630;Dbxref=GenBank:WP_000778057.1;Name=WP_000778057.1;Ontology_term=GO:0042126,GO:0008940,GO:0030151,GO:0009325;gbkey=CDS;gene=napA;go_component=nitrate reductase complex|0009325||IEA;go_function=nitrate reductase activity|0008940||IEA,molybdenum ion binding|0030151||IEA;go_process=nitrate metabolic process|0042126||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311122.1;locus_tag=AD39_RS11630;product=periplasmic nitrate reductase subunit alpha;protein_id=WP_000778057.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 104179 104442 . - . ID=gene-AD39_RS11625;Name=napD;gbkey=Gene;gene=napD;gene_biotype=protein_coding;locus_tag=AD39_RS11625;old_locus_tag=AD39_2587 NZ_JJLH01000034.1 Protein Homology CDS 104179 104442 . - 0 ID=cds-WP_000557378.1;Parent=gene-AD39_RS11625;Dbxref=GenBank:WP_000557378.1;Name=WP_000557378.1;gbkey=CDS;gene=napD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311123.1;locus_tag=AD39_RS11625;product=chaperone NapD;protein_id=WP_000557378.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 104432 104926 . - . ID=gene-AD39_RS11620;Name=napF;gbkey=Gene;gene=napF;gene_biotype=protein_coding;locus_tag=AD39_RS11620;old_locus_tag=AD39_2588 NZ_JJLH01000034.1 Protein Homology CDS 104432 104926 . - 0 ID=cds-WP_000686723.1;Parent=gene-AD39_RS11620;Dbxref=GenBank:WP_000686723.1;Name=WP_000686723.1;Ontology_term=GO:0051539;gbkey=CDS;gene=napF;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311124.1;locus_tag=AD39_RS11620;product=ferredoxin-type protein NapF;protein_id=WP_000686723.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 105035 105199 . + . ID=gene-AD39_RS29455;Name=yojO;gbkey=Gene;gene=yojO;gene_biotype=protein_coding;locus_tag=AD39_RS29455;old_locus_tag=AD39_2589 NZ_JJLH01000034.1 Protein Homology CDS 105035 105199 . + 0 ID=cds-WP_001296837.1;Parent=gene-AD39_RS29455;Dbxref=GenBank:WP_001296837.1;Name=WP_001296837.1;gbkey=CDS;gene=yojO;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518801.1;locus_tag=AD39_RS29455;product=protein YojO;protein_id=WP_001296837.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 105313 105822 . + . ID=gene-AD39_RS11610;Name=eco;gbkey=Gene;gene=eco;gene_biotype=protein_coding;locus_tag=AD39_RS11610;old_locus_tag=AD39_2590 NZ_JJLH01000034.1 Protein Homology CDS 105313 105822 . + 0 ID=cds-WP_282915988.1;Parent=gene-AD39_RS11610;Dbxref=GenBank:WP_282915988.1;Name=WP_282915988.1;Ontology_term=GO:0004867;gbkey=CDS;gene=eco;go_function=serine-type endopeptidase inhibitor activity|0004867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008785302.1;locus_tag=AD39_RS11610;product=serine protease inhibitor ecotin;protein_id=WP_282915988.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 105971 107617 . - . ID=gene-AD39_RS11605;Name=mqo;gbkey=Gene;gene=mqo;gene_biotype=protein_coding;locus_tag=AD39_RS11605;old_locus_tag=AD39_2591 NZ_JJLH01000034.1 Protein Homology CDS 105971 107617 . - 0 ID=cds-WP_000758074.1;Parent=gene-AD39_RS11605;Dbxref=GenBank:WP_000758074.1;Name=WP_000758074.1;Ontology_term=GO:0006099,GO:0008924;gbkey=CDS;gene=mqo;go_function=L-malate dehydrogenase (quinone) activity|0008924||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311126.1;locus_tag=AD39_RS11605;product=malate dehydrogenase (quinone);protein_id=WP_000758074.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 107835 109478 . - . ID=gene-AD39_RS11600;Name=yojI;gbkey=Gene;gene=yojI;gene_biotype=protein_coding;locus_tag=AD39_RS11600;old_locus_tag=AD39_2592 NZ_JJLH01000034.1 Protein Homology CDS 107835 109478 . - 0 ID=cds-WP_000422230.1;Parent=gene-AD39_RS11600;Dbxref=GenBank:WP_000422230.1;Name=WP_000422230.1;gbkey=CDS;gene=yojI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416715.1;locus_tag=AD39_RS11600;product=microcin J25 efflux ABC transporter YojI;protein_id=WP_000422230.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 109554 110204 . - . ID=gene-AD39_RS11595;Name=alkB;gbkey=Gene;gene=alkB;gene_biotype=protein_coding;locus_tag=AD39_RS11595;old_locus_tag=AD39_2593 NZ_JJLH01000034.1 Protein Homology CDS 109554 110204 . - 0 ID=cds-WP_000884942.1;Parent=gene-AD39_RS11595;Dbxref=GenBank:WP_000884942.1;Name=WP_000884942.1;gbkey=CDS;gene=alkB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311128.1;locus_tag=AD39_RS11595;product=DNA oxidative demethylase AlkB;protein_id=WP_000884942.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 110204 111268 . - . ID=gene-AD39_RS11590;Name=ada;gbkey=Gene;gene=ada;gene_biotype=protein_coding;locus_tag=AD39_RS11590;old_locus_tag=AD39_2594 NZ_JJLH01000034.1 Protein Homology CDS 110204 111268 . - 0 ID=cds-WP_000710363.1;Parent=gene-AD39_RS11590;Dbxref=GenBank:WP_000710363.1;Name=WP_000710363.1;Ontology_term=GO:0006281,GO:0006355,GO:0003700;gbkey=CDS;gene=ada;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=DNA repair|0006281||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416717.1;locus_tag=AD39_RS11590;product=bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada;protein_id=WP_000710363.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 111342 112397 . - . ID=gene-AD39_RS11585;Name=apbE;gbkey=Gene;gene=apbE;gene_biotype=protein_coding;locus_tag=AD39_RS11585;old_locus_tag=AD39_2595 NZ_JJLH01000034.1 Protein Homology CDS 111342 112397 . - 0 ID=cds-WP_000406087.1;Parent=gene-AD39_RS11585;Dbxref=GenBank:WP_000406087.1;Name=WP_000406087.1;Ontology_term=GO:0017013;gbkey=CDS;gene=apbE;go_process=protein flavinylation|0017013||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708109.1;locus_tag=AD39_RS11585;product=FAD:protein FMN transferase ApbE;protein_id=WP_000406087.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 112509 113612 . - . ID=gene-AD39_RS11580;Name=ompC;gbkey=Gene;gene=ompC;gene_biotype=protein_coding;locus_tag=AD39_RS11580;old_locus_tag=AD39_2596 NZ_JJLH01000034.1 Protein Homology CDS 112509 113612 . - 0 ID=cds-WP_000865570.1;Parent=gene-AD39_RS11580;Dbxref=GenBank:WP_000865570.1;Name=WP_000865570.1;gbkey=CDS;gene=ompC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416719.1;locus_tag=AD39_RS11580;product=porin OmpC;protein_id=WP_000865570.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 114351 117023 . + . ID=gene-AD39_RS11575;Name=rcsD;gbkey=Gene;gene=rcsD;gene_biotype=protein_coding;locus_tag=AD39_RS11575;old_locus_tag=AD39_2597 NZ_JJLH01000034.1 Protein Homology CDS 114351 117023 . + 0 ID=cds-WP_001249085.1;Parent=gene-AD39_RS11575;Dbxref=GenBank:WP_001249085.1;Name=WP_001249085.1;Ontology_term=GO:0000160,GO:0009927,GO:0005886;gbkey=CDS;gene=rcsD;go_component=plasma membrane|0005886||IEA;go_function=histidine phosphotransfer kinase activity|0009927||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311132.1;locus_tag=AD39_RS11575;product=phosphotransferase RcsD;protein_id=WP_001249085.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 117040 117690 . + . ID=gene-AD39_RS11570;Name=rcsB;gbkey=Gene;gene=rcsB;gene_biotype=protein_coding;locus_tag=AD39_RS11570;old_locus_tag=AD39_2598 NZ_JJLH01000034.1 Protein Homology CDS 117040 117690 . + 0 ID=cds-WP_001061917.1;Parent=gene-AD39_RS11570;Dbxref=GenBank:WP_001061917.1;Name=WP_001061917.1;gbkey=CDS;gene=rcsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311133.1;locus_tag=AD39_RS11570;product=response regulator transcription factor RcsB;protein_id=WP_001061917.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 117890 120739 . - . ID=gene-AD39_RS11565;Name=rcsC;gbkey=Gene;gene=rcsC;gene_biotype=protein_coding;locus_tag=AD39_RS11565;old_locus_tag=AD39_2599 NZ_JJLH01000034.1 Protein Homology CDS 117890 120739 . - 0 ID=cds-WP_001479420.1;Parent=gene-AD39_RS11565;Dbxref=GenBank:WP_001479420.1;Name=WP_001479420.1;Ontology_term=GO:0000160,GO:0006355,GO:0018106,GO:0000155,GO:0005524,GO:0016020;gbkey=CDS;gene=rcsC;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,ATP binding|0005524||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,peptidyl-histidine phosphorylation|0018106||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416722.2;locus_tag=AD39_RS11565;product=two-component system sensor histidine kinase RcsC;protein_id=WP_001479420.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 121014 121790 . - . ID=gene-AD39_RS11560;Name=yfaP;gbkey=Gene;gene=yfaP;gene_biotype=protein_coding;locus_tag=AD39_RS11560;old_locus_tag=AD39_2600 NZ_JJLH01000034.1 Protein Homology CDS 121014 121790 . - 0 ID=cds-WP_001225868.1;Parent=gene-AD39_RS11560;Dbxref=GenBank:WP_001225868.1;Name=WP_001225868.1;gbkey=CDS;gene=yfaP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311135.1;locus_tag=AD39_RS11560;product=YfaP family protein;protein_id=WP_001225868.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 121795 123444 . - . ID=gene-AD39_RS11555;Name=yfaQ;gbkey=Gene;gene=yfaQ;gene_biotype=protein_coding;locus_tag=AD39_RS11555;old_locus_tag=AD39_2601 NZ_JJLH01000034.1 Protein Homology CDS 121795 123444 . - 0 ID=cds-WP_032287579.1;Parent=gene-AD39_RS11555;Dbxref=GenBank:WP_032287579.1;Name=WP_032287579.1;gbkey=CDS;gene=yfaQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416730.1;locus_tag=AD39_RS11555;product=YfaQ family protein;protein_id=WP_032287579.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 123445 127959 . - . ID=gene-AD39_RS11550;Name=AD39_RS11550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS11550;old_locus_tag=AD39_2602 NZ_JJLH01000034.1 Protein Homology CDS 123445 127959 . - 0 ID=cds-WP_032287580.1;Parent=gene-AD39_RS11550;Dbxref=GenBank:WP_032287580.1;Name=WP_032287580.1;Ontology_term=GO:0010951,GO:0004866;gbkey=CDS;go_function=endopeptidase inhibitor activity|0004866||IEA;go_process=negative regulation of endopeptidase activity|0010951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000536590.1;locus_tag=AD39_RS11550;product=alpha-2-macroglobulin family protein;protein_id=WP_032287580.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 127983 128606 . - . ID=gene-AD39_RS11545;Name=yfaT;gbkey=Gene;gene=yfaT;gene_biotype=protein_coding;locus_tag=AD39_RS11545;old_locus_tag=AD39_2603 NZ_JJLH01000034.1 Protein Homology CDS 127983 128606 . - 0 ID=cds-WP_001298790.1;Parent=gene-AD39_RS11545;Dbxref=GenBank:WP_001298790.1;Name=WP_001298790.1;gbkey=CDS;gene=yfaT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311139.2;locus_tag=AD39_RS11545;product=DUF1175 domain-containing protein;protein_id=WP_001298790.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 128603 130291 . - . ID=gene-AD39_RS11540;Name=yfaA;gbkey=Gene;gene=yfaA;gene_biotype=protein_coding;locus_tag=AD39_RS11540;old_locus_tag=AD39_2604 NZ_JJLH01000034.1 Protein Homology CDS 128603 130291 . - 0 ID=cds-WP_032283404.1;Parent=gene-AD39_RS11540;Dbxref=GenBank:WP_032283404.1;Name=WP_032283404.1;gbkey=CDS;gene=yfaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416733.4;locus_tag=AD39_RS11540;product=DUF2138 domain-containing protein;protein_id=WP_032283404.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 130440 133067 . - . ID=gene-AD39_RS11535;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;locus_tag=AD39_RS11535;old_locus_tag=AD39_2605 NZ_JJLH01000034.1 Protein Homology CDS 130440 133067 . - 0 ID=cds-WP_032287581.1;Parent=gene-AD39_RS11535;Dbxref=GenBank:WP_032287581.1;Name=WP_032287581.1;Ontology_term=GO:0006265,GO:0003916,GO:0003918,GO:0009330;gbkey=CDS;gene=gyrA;go_component=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) complex|0009330||IEA;go_function=DNA topoisomerase activity|0003916||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416734.1;locus_tag=AD39_RS11535;product=DNA topoisomerase (ATP-hydrolyzing) subunit A;protein_id=WP_032287581.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 133214 133936 . + . ID=gene-AD39_RS11530;Name=ubiG;gbkey=Gene;gene=ubiG;gene_biotype=protein_coding;locus_tag=AD39_RS11530;old_locus_tag=AD39_2606 NZ_JJLH01000034.1 Protein Homology CDS 133214 133936 . + 0 ID=cds-WP_000990766.1;Parent=gene-AD39_RS11530;Dbxref=GenBank:WP_000990766.1;Name=WP_000990766.1;Ontology_term=GO:0006744,GO:0061542;gbkey=CDS;gene=ubiG;go_function=3-demethylubiquinol 3-O-methyltransferase activity|0061542||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416735.1;locus_tag=AD39_RS11530;product=bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG;protein_id=WP_000990766.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 134064 137798 . - . ID=gene-AD39_RS11525;Name=yfaL;gbkey=Gene;gene=yfaL;gene_biotype=protein_coding;locus_tag=AD39_RS11525;old_locus_tag=AD39_2607 NZ_JJLH01000034.1 Protein Homology CDS 134064 137798 . - 0 ID=cds-WP_032287582.1;Parent=gene-AD39_RS11525;Dbxref=GenBank:WP_032287582.1;Name=WP_032287582.1;Ontology_term=GO:0019867;gbkey=CDS;gene=yfaL;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416736.1;locus_tag=AD39_RS11525;product=AIDA-I family autotransporter adhesin YfaL/EhaC;protein_id=WP_032287582.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 138223 138366 . - . ID=gene-AD39_RS29965;Name=ypaB;gbkey=Gene;gene=ypaB;gene_biotype=protein_coding;locus_tag=AD39_RS29965 NZ_JJLH01000034.1 Protein Homology CDS 138223 138366 . - 0 ID=cds-WP_001300064.1;Parent=gene-AD39_RS29965;Dbxref=GenBank:WP_001300064.1;Name=WP_001300064.1;gbkey=CDS;gene=ypaB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001753443.1;locus_tag=AD39_RS29965;product=protein YpaB;protein_id=WP_001300064.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 138494 140779 . + . ID=gene-AD39_RS11520;Name=nrdA;gbkey=Gene;gene=nrdA;gene_biotype=protein_coding;locus_tag=AD39_RS11520;old_locus_tag=AD39_2608 NZ_JJLH01000034.1 Protein Homology CDS 138494 140779 . + 0 ID=cds-WP_001075170.1;Parent=gene-AD39_RS11520;Dbxref=GenBank:WP_001075170.1;Name=WP_001075170.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;gene=nrdA;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129392.1;locus_tag=AD39_RS11520;product=class 1a ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_001075170.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 140868 141998 . + . ID=gene-AD39_RS11515;Name=nrdB;gbkey=Gene;gene=nrdB;gene_biotype=protein_coding;locus_tag=AD39_RS11515;old_locus_tag=AD39_2609 NZ_JJLH01000034.1 Protein Homology CDS 140868 141998 . + 0 ID=cds-WP_000332036.1;Parent=gene-AD39_RS11515;Dbxref=GenBank:WP_000332036.1;Name=WP_000332036.1;Ontology_term=GO:0009263,GO:0016491;gbkey=CDS;gene=nrdB;go_function=oxidoreductase activity|0016491||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006683700.1;locus_tag=AD39_RS11515;product=class Ia ribonucleoside-diphosphate reductase subunit beta;protein_id=WP_000332036.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 141998 142252 . + . ID=gene-AD39_RS11510;Name=yfaE;gbkey=Gene;gene=yfaE;gene_biotype=protein_coding;locus_tag=AD39_RS11510;old_locus_tag=AD39_2610 NZ_JJLH01000034.1 Protein Homology CDS 141998 142252 . + 0 ID=cds-WP_000135040.1;Parent=gene-AD39_RS11510;Dbxref=GenBank:WP_000135040.1;Name=WP_000135040.1;gbkey=CDS;gene=yfaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416739.1;locus_tag=AD39_RS11510;product=ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE;protein_id=WP_000135040.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 142306 142956 . - . ID=gene-AD39_RS11505;Name=inaA;gbkey=Gene;gene=inaA;gene_biotype=protein_coding;locus_tag=AD39_RS11505;old_locus_tag=AD39_2611 NZ_JJLH01000034.1 Protein Homology CDS 142306 142956 . - 0 ID=cds-WP_001405456.1;Parent=gene-AD39_RS11505;Dbxref=GenBank:WP_001405456.1;Name=WP_001405456.1;gbkey=CDS;gene=inaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416740.1;locus_tag=AD39_RS11505;product=lipopolysaccharide kinase InaA;protein_id=WP_001405456.1;transl_table=11 NZ_JJLH01000034.1 RefSeq pseudogene 143036 143140 . - . ID=gene-AD39_RS29755;Name=AD39_RS29755;end_range=143140,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29755;partial=true;pseudo=true NZ_JJLH01000034.1 Protein Homology CDS 143036 143140 . - 0 ID=cds-AD39_RS29755;Parent=gene-AD39_RS29755;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=143140,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311148.1;locus_tag=AD39_RS29755;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000034.1 RefSeq pseudogene 143138 143377 . + . ID=gene-AD39_RS11500;Name=AD39_RS11500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS11500;old_locus_tag=AD39_2612;partial=true;pseudo=true;start_range=.,143138 NZ_JJLH01000034.1 Protein Homology CDS 143138 143377 . + 0 ID=cds-AD39_RS11500;Parent=gene-AD39_RS11500;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311149.1;locus_tag=AD39_RS11500;partial=true;product=LysR family transcriptional regulator;pseudo=true;start_range=.,143138;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 143419 144495 . - . ID=gene-AD39_RS11495;Name=glpQ;gbkey=Gene;gene=glpQ;gene_biotype=protein_coding;locus_tag=AD39_RS11495;old_locus_tag=AD39_2613 NZ_JJLH01000034.1 Protein Homology CDS 143419 144495 . - 0 ID=cds-WP_000768973.1;Parent=gene-AD39_RS11495;Dbxref=GenBank:WP_000768973.1;Name=WP_000768973.1;Ontology_term=GO:0006629,GO:0008081;gbkey=CDS;gene=glpQ;go_function=phosphoric diester hydrolase activity|0008081||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311151.1;locus_tag=AD39_RS11495;product=glycerophosphodiester phosphodiesterase;protein_id=WP_000768973.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 144500 145858 . - . ID=gene-AD39_RS11490;Name=glpT;gbkey=Gene;gene=glpT;gene_biotype=protein_coding;locus_tag=AD39_RS11490;old_locus_tag=AD39_2614 NZ_JJLH01000034.1 Protein Homology CDS 144500 145858 . - 0 ID=cds-WP_000948723.1;Parent=gene-AD39_RS11490;Dbxref=GenBank:WP_000948723.1;Name=WP_000948723.1;Ontology_term=GO:0015794,GO:0015169,GO:0016020;gbkey=CDS;gene=glpT;go_component=membrane|0016020||IEA;go_function=glycerol-3-phosphate transmembrane transporter activity|0015169||IEA;go_process=glycerol-3-phosphate transmembrane transport|0015794||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708130.1;locus_tag=AD39_RS11490;product=glycerol-3-phosphate transporter;protein_id=WP_000948723.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 146131 147759 . + . ID=gene-AD39_RS11485;Name=glpA;gbkey=Gene;gene=glpA;gene_biotype=protein_coding;locus_tag=AD39_RS11485;old_locus_tag=AD39_2616 NZ_JJLH01000034.1 Protein Homology CDS 146131 147759 . + 0 ID=cds-WP_000857257.1;Parent=gene-AD39_RS11485;Dbxref=GenBank:WP_000857257.1;Name=WP_000857257.1;Ontology_term=GO:0006072,GO:0046174,GO:0004368,GO:0010181,GO:0050660,GO:0009331;gbkey=CDS;gene=glpA;go_component=glycerol-3-phosphate dehydrogenase (FAD) complex|0009331||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA,FMN binding|0010181||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA,polyol catabolic process|0046174||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311153.1;locus_tag=AD39_RS11485;product=anaerobic glycerol-3-phosphate dehydrogenase subunit A;protein_id=WP_000857257.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 147749 149008 . + . ID=gene-AD39_RS11480;Name=glpB;gbkey=Gene;gene=glpB;gene_biotype=protein_coding;locus_tag=AD39_RS11480;old_locus_tag=AD39_2617 NZ_JJLH01000034.1 Protein Homology CDS 147749 149008 . + 0 ID=cds-WP_001209911.1;Parent=gene-AD39_RS11480;Dbxref=GenBank:WP_001209911.1;Name=WP_001209911.1;Ontology_term=GO:0004368;gbkey=CDS;gene=glpB;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708132.2;locus_tag=AD39_RS11480;product=glycerol-3-phosphate dehydrogenase subunit GlpB;protein_id=WP_001209911.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 149005 150195 . + . ID=gene-AD39_RS11475;Name=glpC;gbkey=Gene;gene=glpC;gene_biotype=protein_coding;locus_tag=AD39_RS11475;old_locus_tag=AD39_2618 NZ_JJLH01000034.1 Protein Homology CDS 149005 150195 . + 0 ID=cds-WP_001000358.1;Parent=gene-AD39_RS11475;Dbxref=GenBank:WP_001000358.1;Name=WP_001000358.1;Ontology_term=GO:0006071,GO:0009061,GO:0004368,GO:0051536,GO:0009331,GO:0016020;gbkey=CDS;gene=glpC;go_component=glycerol-3-phosphate dehydrogenase (FAD) complex|0009331||IEA,membrane|0016020||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=glycerol metabolic process|0006071||IEA,anaerobic respiration|0009061||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311155.1;locus_tag=AD39_RS11475;product=anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC;protein_id=WP_001000358.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 150389 151291 . + . ID=gene-AD39_RS11470;Name=rpnE;gbkey=Gene;gene=rpnE;gene_biotype=protein_coding;locus_tag=AD39_RS11470;old_locus_tag=AD39_2619 NZ_JJLH01000034.1 Protein Homology CDS 150389 151291 . + 0 ID=cds-WP_000140570.1;Parent=gene-AD39_RS11470;Dbxref=GenBank:WP_000140570.1;Name=WP_000140570.1;gbkey=CDS;gene=rpnE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311156.1;locus_tag=AD39_RS11470;product=ISNCY family transposase;protein_id=WP_000140570.1;transl_table=11 NZ_JJLH01000034.1 RefSeq pseudogene 151332 151793 . - . ID=gene-AD39_RS11465;Name=AD39_RS11465;end_range=151793,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS11465;old_locus_tag=AD39_2620;partial=true;pseudo=true NZ_JJLH01000034.1 Protein Homology CDS 151332 151793 . - 0 ID=cds-AD39_RS11465;Parent=gene-AD39_RS11465;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0003824;end_range=151793,.;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416748.1;locus_tag=AD39_RS11465;partial=true;product=aldolase/citrate lyase family protein;pseudo=true;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 151857 153059 . - . ID=gene-AD39_RS11460;Name=yfaY;gbkey=Gene;gene=yfaY;gene_biotype=protein_coding;locus_tag=AD39_RS11460;old_locus_tag=AD39_2621 NZ_JJLH01000034.1 Protein Homology CDS 151857 153059 . - 0 ID=cds-WP_000921621.1;Parent=gene-AD39_RS11460;Dbxref=GenBank:WP_000921621.1;Name=WP_000921621.1;gbkey=CDS;gene=yfaY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416752.1;locus_tag=AD39_RS11460;product=nicotinamide mononucleotide deamidase-related protein YfaY;protein_id=WP_000921621.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 153159 153701 . - . ID=gene-AD39_RS11455;Name=yfaZ;gbkey=Gene;gene=yfaZ;gene_biotype=protein_coding;locus_tag=AD39_RS11455;old_locus_tag=AD39_2622 NZ_JJLH01000034.1 Protein Homology CDS 153159 153701 . - 0 ID=cds-WP_000717009.1;Parent=gene-AD39_RS11455;Dbxref=GenBank:WP_000717009.1;Name=WP_000717009.1;gbkey=CDS;gene=yfaZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311165.2;locus_tag=AD39_RS11455;product=YfaZ family outer membrane protein;protein_id=WP_000717009.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 153980 154405 . + . ID=gene-AD39_RS11450;Name=nudI;gbkey=Gene;gene=nudI;gene_biotype=protein_coding;locus_tag=AD39_RS11450;old_locus_tag=AD39_2623 NZ_JJLH01000034.1 Protein Homology CDS 153980 154405 . + 0 ID=cds-WP_001249889.1;Parent=gene-AD39_RS11450;Dbxref=GenBank:WP_001249889.1;Name=WP_001249889.1;Ontology_term=GO:0016818;gbkey=CDS;gene=nudI;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311166.1;locus_tag=AD39_RS11450;product=nucleoside triphosphatase NudI;protein_id=WP_001249889.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 154444 155046 . - . ID=gene-AD39_RS11445;Name=ais;gbkey=Gene;gene=ais;gene_biotype=protein_coding;locus_tag=AD39_RS11445;old_locus_tag=AD39_2624 NZ_JJLH01000034.1 Protein Homology CDS 154444 155046 . - 0 ID=cds-WP_001297077.1;Parent=gene-AD39_RS11445;Dbxref=GenBank:WP_001297077.1;Name=WP_001297077.1;gbkey=CDS;gene=ais;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311167.1;locus_tag=AD39_RS11445;product=lipopolysaccharide core heptose(II)-phosphate phosphatase Ais;protein_id=WP_001297077.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 155354 156493 . + . ID=gene-AD39_RS11440;Name=arnB;gbkey=Gene;gene=arnB;gene_biotype=protein_coding;locus_tag=AD39_RS11440;old_locus_tag=AD39_2625 NZ_JJLH01000034.1 Protein Homology CDS 155354 156493 . + 0 ID=cds-WP_001388277.1;Parent=gene-AD39_RS11440;Dbxref=GenBank:WP_001388277.1;Name=WP_001388277.1;Ontology_term=GO:0008483;gbkey=CDS;gene=arnB;go_function=transaminase activity|0008483||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_024188371.1;locus_tag=AD39_RS11440;product=UDP-4-amino-4-deoxy-L-arabinose aminotransferase;protein_id=WP_001388277.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 156497 157465 . + . ID=gene-AD39_RS11435;Name=arnC;gbkey=Gene;gene=arnC;gene_biotype=protein_coding;locus_tag=AD39_RS11435;old_locus_tag=AD39_2626 NZ_JJLH01000034.1 Protein Homology CDS 156497 157465 . + 0 ID=cds-WP_000461661.1;Parent=gene-AD39_RS11435;Dbxref=GenBank:WP_000461661.1;Name=WP_000461661.1;Ontology_term=GO:0016780;gbkey=CDS;gene=arnC;go_function=phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416757.1;locus_tag=AD39_RS11435;product=undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase;protein_id=WP_000461661.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 157465 159447 . + . ID=gene-AD39_RS11430;Name=arnA;gbkey=Gene;gene=arnA;gene_biotype=protein_coding;locus_tag=AD39_RS11430;old_locus_tag=AD39_2627 NZ_JJLH01000034.1 Protein Homology CDS 157465 159447 . + 0 ID=cds-WP_000860259.1;Parent=gene-AD39_RS11430;Dbxref=GenBank:WP_000860259.1;Name=WP_000860259.1;Ontology_term=GO:0009058,GO:0016742;gbkey=CDS;gene=arnA;go_function=hydroxymethyl-%2C formyl- and related transferase activity|0016742||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416758.1;locus_tag=AD39_RS11430;product=bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA;protein_id=WP_000860259.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 159444 160334 . + . ID=gene-AD39_RS11425;Name=arnD;gbkey=Gene;gene=arnD;gene_biotype=protein_coding;locus_tag=AD39_RS11425;old_locus_tag=AD39_2628 NZ_JJLH01000034.1 Protein Homology CDS 159444 160334 . + 0 ID=cds-WP_032215458.1;Parent=gene-AD39_RS11425;Dbxref=GenBank:WP_032215458.1;Name=WP_032215458.1;Ontology_term=GO:0016810;gbkey=CDS;gene=arnD;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311171.1;locus_tag=AD39_RS11425;product=4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase;protein_id=WP_032215458.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 160334 161986 . + . ID=gene-AD39_RS11420;Name=arnT;gbkey=Gene;gene=arnT;gene_biotype=protein_coding;locus_tag=AD39_RS11420;old_locus_tag=AD39_2629 NZ_JJLH01000034.1 Protein Homology CDS 160334 161986 . + 0 ID=cds-WP_000844046.1;Parent=gene-AD39_RS11420;Dbxref=GenBank:WP_000844046.1;Name=WP_000844046.1;Ontology_term=GO:0006493,GO:0000030,GO:0016763,GO:0016020;gbkey=CDS;gene=arnT;go_component=membrane|0016020||IEA;go_function=mannosyltransferase activity|0000030||IEA,pentosyltransferase activity|0016763||IEA;go_process=protein O-linked glycosylation|0006493||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416760.1;locus_tag=AD39_RS11420;product=lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase;protein_id=WP_000844046.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 161983 162318 . + . ID=gene-AD39_RS11415;Name=arnE;gbkey=Gene;gene=arnE;gene_biotype=protein_coding;locus_tag=AD39_RS11415;old_locus_tag=AD39_2630 NZ_JJLH01000034.1 Protein Homology CDS 161983 162318 . + 0 ID=cds-WP_000638031.1;Parent=gene-AD39_RS11415;Dbxref=GenBank:WP_000638031.1;Name=WP_000638031.1;gbkey=CDS;gene=arnE;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588462.1;locus_tag=AD39_RS11415;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE;protein_id=WP_000638031.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 162318 162704 . + . ID=gene-AD39_RS11410;Name=arnF;gbkey=Gene;gene=arnF;gene_biotype=protein_coding;locus_tag=AD39_RS11410;old_locus_tag=AD39_2631 NZ_JJLH01000034.1 Protein Homology CDS 162318 162704 . + 0 ID=cds-WP_000523005.1;Parent=gene-AD39_RS11410;Dbxref=GenBank:WP_000523005.1;Name=WP_000523005.1;gbkey=CDS;gene=arnF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311173.2;locus_tag=AD39_RS11410;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF;protein_id=WP_000523005.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 162698 162964 . - . ID=gene-AD39_RS11405;Name=pmrD;gbkey=Gene;gene=pmrD;gene_biotype=protein_coding;locus_tag=AD39_RS11405;old_locus_tag=AD39_2632 NZ_JJLH01000034.1 Protein Homology CDS 162698 162964 . - 0 ID=cds-WP_001297080.1;Parent=gene-AD39_RS11405;Dbxref=GenBank:WP_001297080.1;Name=WP_001297080.1;gbkey=CDS;gene=pmrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416762.2;locus_tag=AD39_RS11405;product=signal transduction protein PmrD;protein_id=WP_001297080.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 163074 164429 . - . ID=gene-AD39_RS11400;Name=menE;gbkey=Gene;gene=menE;gene_biotype=protein_coding;locus_tag=AD39_RS11400;old_locus_tag=AD39_2633 NZ_JJLH01000034.1 Protein Homology CDS 163074 164429 . - 0 ID=cds-WP_000577556.1;Parent=gene-AD39_RS11400;Dbxref=GenBank:WP_000577556.1;Name=WP_000577556.1;Ontology_term=GO:0009234,GO:0005524,GO:0008756;gbkey=CDS;gene=menE;go_function=ATP binding|0005524||IEA,o-succinylbenzoate-CoA ligase activity|0008756||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708146.1;locus_tag=AD39_RS11400;product=o-succinylbenzoate--CoA ligase;protein_id=WP_000577556.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 164426 165388 . - . ID=gene-AD39_RS11395;Name=menC;gbkey=Gene;gene=menC;gene_biotype=protein_coding;locus_tag=AD39_RS11395;old_locus_tag=AD39_2634 NZ_JJLH01000034.1 Protein Homology CDS 164426 165388 . - 0 ID=cds-WP_001478295.1;Parent=gene-AD39_RS11395;Dbxref=GenBank:WP_001478295.1;Name=WP_001478295.1;Ontology_term=GO:0009234,GO:0000287,GO:0016836;gbkey=CDS;gene=menC;go_function=magnesium ion binding|0000287||IEA,hydro-lyase activity|0016836||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311176.1;locus_tag=AD39_RS11395;product=o-succinylbenzoate synthase;protein_id=WP_001478295.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 165388 166245 . - . ID=gene-AD39_RS11390;Name=menB;gbkey=Gene;gene=menB;gene_biotype=protein_coding;locus_tag=AD39_RS11390;old_locus_tag=AD39_2635 NZ_JJLH01000034.1 Protein Homology CDS 165388 166245 . - 0 ID=cds-WP_000639996.1;Parent=gene-AD39_RS11390;Dbxref=GenBank:WP_000639996.1;Name=WP_000639996.1;Ontology_term=GO:0009234,GO:0008935;gbkey=CDS;gene=menB;go_function=1%2C4-dihydroxy-2-naphthoyl-CoA synthase activity|0008935||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001641973.1;locus_tag=AD39_RS11390;product=1%2C4-dihydroxy-2-naphthoyl-CoA synthase;protein_id=WP_000639996.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 166260 167018 . - . ID=gene-AD39_RS11385;Name=menH;gbkey=Gene;gene=menH;gene_biotype=protein_coding;locus_tag=AD39_RS11385;old_locus_tag=AD39_2636 NZ_JJLH01000034.1 Protein Homology CDS 166260 167018 . - 0 ID=cds-WP_000600503.1;Parent=gene-AD39_RS11385;Dbxref=GenBank:WP_000600503.1;Name=WP_000600503.1;Ontology_term=GO:0009234,GO:0070205;gbkey=CDS;gene=menH;go_function=2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase activity|0070205||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416766.1;locus_tag=AD39_RS11385;product=2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase;protein_id=WP_000600503.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 167015 168685 . - . ID=gene-AD39_RS11380;Name=menD;gbkey=Gene;gene=menD;gene_biotype=protein_coding;locus_tag=AD39_RS11380;old_locus_tag=AD39_2637 NZ_JJLH01000034.1 Protein Homology CDS 167015 168685 . - 0 ID=cds-WP_001297082.1;Parent=gene-AD39_RS11380;Dbxref=GenBank:WP_001297082.1;Name=WP_001297082.1;Ontology_term=GO:0009234,GO:0030976,GO:0070204;gbkey=CDS;gene=menD;go_function=thiamine pyrophosphate binding|0030976||IEA,2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity|0070204||IEA;go_process=menaquinone biosynthetic process|0009234||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416767.1;locus_tag=AD39_RS11380;product=2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase;protein_id=WP_001297082.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 168774 170069 . - . ID=gene-AD39_RS11375;Name=menF;gbkey=Gene;gene=menF;gene_biotype=protein_coding;locus_tag=AD39_RS11375;old_locus_tag=AD39_2638 NZ_JJLH01000034.1 Protein Homology CDS 168774 170069 . - 0 ID=cds-WP_001191399.1;Parent=gene-AD39_RS11375;Dbxref=GenBank:WP_001191399.1;Name=WP_001191399.1;Ontology_term=GO:0008909;gbkey=CDS;gene=menF;go_function=isochorismate synthase activity|0008909||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416768.4;locus_tag=AD39_RS11375;product=isochorismate synthase MenF;protein_id=WP_001191399.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 170148 170453 . - . ID=gene-AD39_RS11370;Name=elaB;gbkey=Gene;gene=elaB;gene_biotype=protein_coding;locus_tag=AD39_RS11370;old_locus_tag=AD39_2639 NZ_JJLH01000034.1 Protein Homology CDS 170148 170453 . - 0 ID=cds-WP_000070621.1;Parent=gene-AD39_RS11370;Dbxref=GenBank:WP_000070621.1;Name=WP_000070621.1;gbkey=CDS;gene=elaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311181.1;locus_tag=AD39_RS11370;product=stress response protein ElaB;protein_id=WP_000070621.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 170508 170969 . - . ID=gene-AD39_RS11365;Name=elaA;gbkey=Gene;gene=elaA;gene_biotype=protein_coding;locus_tag=AD39_RS11365;old_locus_tag=AD39_2640 NZ_JJLH01000034.1 Protein Homology CDS 170508 170969 . - 0 ID=cds-WP_000574091.1;Parent=gene-AD39_RS11365;Dbxref=GenBank:WP_000574091.1;Name=WP_000574091.1;gbkey=CDS;gene=elaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416770.1;locus_tag=AD39_RS11365;product=GNAT family N-acetyltransferase;protein_id=WP_000574091.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 171034 171951 . + . ID=gene-AD39_RS11360;Name=rbn;gbkey=Gene;gene=rbn;gene_biotype=protein_coding;locus_tag=AD39_RS11360;old_locus_tag=AD39_2641 NZ_JJLH01000034.1 Protein Homology CDS 171034 171951 . + 0 ID=cds-WP_001300687.1;Parent=gene-AD39_RS11360;Dbxref=GenBank:WP_001300687.1;Name=WP_001300687.1;Ontology_term=GO:0042780,GO:0016891;gbkey=CDS;gene=rbn;go_function=RNA endonuclease activity%2C producing 5'-phosphomonoesters|0016891||IEA;go_process=tRNA 3'-end processing|0042780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416771.4;locus_tag=AD39_RS11360;product=ribonuclease BN;protein_id=WP_001300687.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 172139 173359 . + . ID=gene-AD39_RS11355;Name=elaD;gbkey=Gene;gene=elaD;gene_biotype=protein_coding;locus_tag=AD39_RS11355;old_locus_tag=AD39_2643 NZ_JJLH01000034.1 Protein Homology CDS 172139 173359 . + 0 ID=cds-WP_001438010.1;Parent=gene-AD39_RS11355;Dbxref=GenBank:WP_001438010.1;Name=WP_001438010.1;gbkey=CDS;gene=elaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416772.1;locus_tag=AD39_RS11355;product=deubiquitinase ElaD;protein_id=WP_001438010.1;transl_table=11 NZ_JJLH01000034.1 RefSeq pseudogene 173748 174377 . + . ID=gene-AD39_RS28540;Name=AD39_RS28540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28540;pseudo=true NZ_JJLH01000034.1 Protein Homology CDS 173748 174377 . + 0 ID=cds-AD39_RS28540;Parent=gene-AD39_RS28540;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416774.2;locus_tag=AD39_RS28540;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 174480 174983 . + . ID=gene-AD39_RS11345;Name=yfbM;gbkey=Gene;gene=yfbM;gene_biotype=protein_coding;locus_tag=AD39_RS11345;old_locus_tag=AD39_2645 NZ_JJLH01000034.1 Protein Homology CDS 174480 174983 . + 0 ID=cds-WP_000525365.1;Parent=gene-AD39_RS11345;Dbxref=GenBank:WP_000525365.1;Name=WP_000525365.1;gbkey=CDS;gene=yfbM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311186.1;locus_tag=AD39_RS11345;product=YfbM family protein;protein_id=WP_000525365.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 175050 176507 . - . ID=gene-AD39_RS11340;Name=nuoN;gbkey=Gene;gene=nuoN;gene_biotype=protein_coding;locus_tag=AD39_RS11340;old_locus_tag=AD39_2646 NZ_JJLH01000034.1 Protein Homology CDS 175050 176507 . - 0 ID=cds-WP_000156701.1;Parent=gene-AD39_RS11340;Dbxref=GenBank:WP_000156701.1;Name=WP_000156701.1;Ontology_term=GO:0008137;gbkey=CDS;gene=nuoN;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416779.2;locus_tag=AD39_RS11340;product=NADH-quinone oxidoreductase subunit NuoN;protein_id=WP_000156701.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 176514 178043 . - . ID=gene-AD39_RS11335;Name=nuoM;gbkey=Gene;gene=nuoM;gene_biotype=protein_coding;locus_tag=AD39_RS11335;old_locus_tag=AD39_2647 NZ_JJLH01000034.1 Protein Homology CDS 176514 178043 . - 0 ID=cds-WP_000926441.1;Parent=gene-AD39_RS11335;Dbxref=GenBank:WP_000926441.1;Name=WP_000926441.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoM;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129465.1;locus_tag=AD39_RS11335;product=NADH-quinone oxidoreductase subunit M;protein_id=WP_000926441.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 178274 180115 . - . ID=gene-AD39_RS11330;Name=nuoL;gbkey=Gene;gene=nuoL;gene_biotype=protein_coding;locus_tag=AD39_RS11330;old_locus_tag=AD39_2648 NZ_JJLH01000034.1 Protein Homology CDS 178274 180115 . - 0 ID=cds-WP_001056635.1;Parent=gene-AD39_RS11330;Dbxref=GenBank:WP_001056635.1;Name=WP_001056635.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=nuoL;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129466.1;locus_tag=AD39_RS11330;product=NADH-quinone oxidoreductase subunit L;protein_id=WP_001056635.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 180112 180414 . - . ID=gene-AD39_RS11325;Name=nuoK;gbkey=Gene;gene=nuoK;gene_biotype=protein_coding;locus_tag=AD39_RS11325;old_locus_tag=AD39_2649 NZ_JJLH01000034.1 Protein Homology CDS 180112 180414 . - 0 ID=cds-WP_000612644.1;Parent=gene-AD39_RS11325;Dbxref=GenBank:WP_000612644.1;Name=WP_000612644.1;Ontology_term=GO:0042773,GO:0016651;gbkey=CDS;gene=nuoK;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006683663.1;locus_tag=AD39_RS11325;product=NADH-quinone oxidoreductase subunit NuoK;protein_id=WP_000612644.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 180411 180965 . - . ID=gene-AD39_RS11320;Name=nuoJ;gbkey=Gene;gene=nuoJ;gene_biotype=protein_coding;locus_tag=AD39_RS11320;old_locus_tag=AD39_2650 NZ_JJLH01000034.1 Protein Homology CDS 180411 180965 . - 0 ID=cds-WP_000393511.1;Parent=gene-AD39_RS11320;Dbxref=GenBank:WP_000393511.1;Name=WP_000393511.1;Ontology_term=GO:0008137;gbkey=CDS;gene=nuoJ;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001774950.1;locus_tag=AD39_RS11320;product=NADH-quinone oxidoreductase subunit J;protein_id=WP_000393511.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 180977 181519 . - . ID=gene-AD39_RS11315;Name=nuoI;gbkey=Gene;gene=nuoI;gene_biotype=protein_coding;locus_tag=AD39_RS11315;old_locus_tag=AD39_2651 NZ_JJLH01000034.1 Protein Homology CDS 180977 181519 . - 0 ID=cds-WP_000172749.1;Parent=gene-AD39_RS11315;Dbxref=GenBank:WP_000172749.1;Name=WP_000172749.1;Ontology_term=GO:0016651,GO:0051539,GO:0016020;gbkey=CDS;gene=nuoI;go_component=membrane|0016020||IEA;go_function=oxidoreductase activity%2C acting on NAD(P)H|0016651||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015959823.1;locus_tag=AD39_RS11315;product=NADH-quinone oxidoreductase subunit NuoI;protein_id=WP_000172749.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 181534 182511 . - . ID=gene-AD39_RS11310;Name=nuoH;gbkey=Gene;gene=nuoH;gene_biotype=protein_coding;locus_tag=AD39_RS11310;old_locus_tag=AD39_2652 NZ_JJLH01000034.1 Protein Homology CDS 181534 182511 . - 0 ID=cds-WP_032283406.1;Parent=gene-AD39_RS11310;Dbxref=GenBank:WP_032283406.1;Name=WP_032283406.1;gbkey=CDS;gene=nuoH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015875065.1;locus_tag=AD39_RS11310;product=NADH-quinone oxidoreductase subunit NuoH;protein_id=WP_032283406.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 182508 185234 . - . ID=gene-AD39_RS11305;Name=nuoG;gbkey=Gene;gene=nuoG;gene_biotype=protein_coding;locus_tag=AD39_RS11305;old_locus_tag=AD39_2653 NZ_JJLH01000034.1 Protein Homology CDS 182508 185234 . - 0 ID=cds-WP_001299497.1;Parent=gene-AD39_RS11305;Dbxref=GenBank:WP_001299497.1;Name=WP_001299497.1;Ontology_term=GO:0006120,GO:0050136,GO:0051536;gbkey=CDS;gene=nuoG;go_function=NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=mitochondrial electron transport%2C NADH to ubiquinone|0006120||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311194.2;locus_tag=AD39_RS11305;product=NADH-quinone oxidoreductase subunit NuoG;protein_id=WP_001299497.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 185287 186624 . - . ID=gene-AD39_RS11300;Name=nuoF;gbkey=Gene;gene=nuoF;gene_biotype=protein_coding;locus_tag=AD39_RS11300;old_locus_tag=AD39_2654 NZ_JJLH01000034.1 Protein Homology CDS 185287 186624 . - 0 ID=cds-WP_001645514.1;Parent=gene-AD39_RS11300;Dbxref=GenBank:WP_001645514.1;Name=WP_001645514.1;Ontology_term=GO:0008137,GO:0051539;gbkey=CDS;gene=nuoF;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416787.1;locus_tag=AD39_RS11300;product=NADH-quinone oxidoreductase subunit NuoF;protein_id=WP_001645514.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 186621 187121 . - . ID=gene-AD39_RS11295;Name=nuoE;gbkey=Gene;gene=nuoE;gene_biotype=protein_coding;locus_tag=AD39_RS11295;old_locus_tag=AD39_2655 NZ_JJLH01000034.1 Protein Homology CDS 186621 187121 . - 0 ID=cds-WP_000545042.1;Parent=gene-AD39_RS11295;Dbxref=GenBank:WP_000545042.1;Name=WP_000545042.1;Ontology_term=GO:0016491;gbkey=CDS;gene=nuoE;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416788.1;locus_tag=AD39_RS11295;product=NADH-quinone oxidoreductase subunit NuoE;protein_id=WP_000545042.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 187124 188926 . - . ID=gene-AD39_RS11290;Name=nuoC;gbkey=Gene;gene=nuoC;gene_biotype=protein_coding;locus_tag=AD39_RS11290;old_locus_tag=AD39_2656 NZ_JJLH01000034.1 Protein Homology CDS 187124 188926 . - 0 ID=cds-WP_000247878.1;Parent=gene-AD39_RS11290;Dbxref=GenBank:WP_000247878.1;Name=WP_000247878.1;Ontology_term=GO:0048038,GO:0050136,GO:0051287,GO:0030964;gbkey=CDS;gene=nuoC;go_component=NADH dehydrogenase complex|0030964||IEA;go_function=quinone binding|0048038||IEA,NADH:ubiquinone reductase (non-electrogenic) activity|0050136||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708168.1;locus_tag=AD39_RS11290;product=NADH-quinone oxidoreductase subunit C/D;protein_id=WP_000247878.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 189020 189682 . - . ID=gene-AD39_RS11285;Name=nuoB;gbkey=Gene;gene=nuoB;gene_biotype=protein_coding;locus_tag=AD39_RS11285;old_locus_tag=AD39_2657 NZ_JJLH01000034.1 Protein Homology CDS 189020 189682 . - 0 ID=cds-WP_000386733.1;Parent=gene-AD39_RS11285;Dbxref=GenBank:WP_000386733.1;Name=WP_000386733.1;gbkey=CDS;gene=nuoB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311198.1;locus_tag=AD39_RS11285;product=NADH-quinone oxidoreductase subunit NuoB;protein_id=WP_000386733.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 189698 190141 . - . ID=gene-AD39_RS11280;Name=nuoA;gbkey=Gene;gene=nuoA;gene_biotype=protein_coding;locus_tag=AD39_RS11280;old_locus_tag=AD39_2658 NZ_JJLH01000034.1 Protein Homology CDS 189698 190141 . - 0 ID=cds-WP_000062997.1;Parent=gene-AD39_RS11280;Dbxref=GenBank:WP_000062997.1;Name=WP_000062997.1;gbkey=CDS;gene=nuoA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708170.1;locus_tag=AD39_RS11280;product=NADH-quinone oxidoreductase subunit NuoA;protein_id=WP_000062997.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 190773 191711 . - . ID=gene-AD39_RS11275;Name=lrhA;gbkey=Gene;gene=lrhA;gene_biotype=protein_coding;locus_tag=AD39_RS11275;old_locus_tag=AD39_2659 NZ_JJLH01000034.1 Protein Homology CDS 190773 191711 . - 0 ID=cds-WP_000622286.1;Parent=gene-AD39_RS11275;Dbxref=GenBank:WP_000622286.1;Name=WP_000622286.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=lrhA;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311200.1;locus_tag=AD39_RS11275;product=transcriptional regulator LrhA;protein_id=WP_000622286.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 192631 193848 . + . ID=gene-AD39_RS11270;Name=alaA;gbkey=Gene;gene=alaA;gene_biotype=protein_coding;locus_tag=AD39_RS11270;old_locus_tag=AD39_2660 NZ_JJLH01000034.1 Protein Homology CDS 192631 193848 . + 0 ID=cds-WP_032283407.1;Parent=gene-AD39_RS11270;Dbxref=GenBank:WP_032283407.1;Name=WP_032283407.1;gbkey=CDS;gene=alaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416793.1;locus_tag=AD39_RS11270;product=alanine transaminase AlaA;protein_id=WP_032283407.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 193932 194531 . + . ID=gene-AD39_RS11265;Name=yfbR;gbkey=Gene;gene=yfbR;gene_biotype=protein_coding;locus_tag=AD39_RS11265;old_locus_tag=AD39_2661 NZ_JJLH01000034.1 Protein Homology CDS 193932 194531 . + 0 ID=cds-WP_000813860.1;Parent=gene-AD39_RS11265;Dbxref=GenBank:WP_000813860.1;Name=WP_000813860.1;Ontology_term=GO:0002953;gbkey=CDS;gene=yfbR;go_function=5'-deoxynucleotidase activity|0002953||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311202.1;locus_tag=AD39_RS11265;product=5'-deoxynucleotidase;protein_id=WP_000813860.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 194590 196422 . - . ID=gene-AD39_RS11260;Name=yfbS;gbkey=Gene;gene=yfbS;gene_biotype=protein_coding;locus_tag=AD39_RS11260;old_locus_tag=AD39_2662 NZ_JJLH01000034.1 Protein Homology CDS 194590 196422 . - 0 ID=cds-WP_001012899.1;Parent=gene-AD39_RS11260;Dbxref=GenBank:WP_001012899.1;Name=WP_001012899.1;Ontology_term=GO:0008324;gbkey=CDS;gene=yfbS;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311203.1;locus_tag=AD39_RS11260;product=SLC13 family permease;protein_id=WP_001012899.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 196509 197159 . - . ID=gene-AD39_RS11255;Name=hxpA;gbkey=Gene;gene=hxpA;gene_biotype=protein_coding;locus_tag=AD39_RS11255;old_locus_tag=AD39_2663 NZ_JJLH01000034.1 Protein Homology CDS 196509 197159 . - 0 ID=cds-WP_001203389.1;Parent=gene-AD39_RS11255;Dbxref=GenBank:WP_001203389.1;Name=WP_001203389.1;gbkey=CDS;gene=hxpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311204.1;locus_tag=AD39_RS11255;product=hexitol phosphatase HxpA;protein_id=WP_001203389.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 197170 197664 . - . ID=gene-AD39_RS11250;Name=yfbU;gbkey=Gene;gene=yfbU;gene_biotype=protein_coding;locus_tag=AD39_RS11250;old_locus_tag=AD39_2664 NZ_JJLH01000034.1 Protein Homology CDS 197170 197664 . - 0 ID=cds-WP_000426124.1;Parent=gene-AD39_RS11250;Dbxref=GenBank:WP_000426124.1;Name=WP_000426124.1;gbkey=CDS;gene=yfbU;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007371080.1;locus_tag=AD39_RS11250;product=YfbU family protein;protein_id=WP_000426124.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 197747 198202 . - . ID=gene-AD39_RS11245;Name=yfbV;gbkey=Gene;gene=yfbV;gene_biotype=protein_coding;locus_tag=AD39_RS11245;old_locus_tag=AD39_2665 NZ_JJLH01000034.1 Protein Homology CDS 197747 198202 . - 0 ID=cds-WP_000106627.1;Parent=gene-AD39_RS11245;Dbxref=GenBank:WP_000106627.1;Name=WP_000106627.1;gbkey=CDS;gene=yfbV;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129545.1;locus_tag=AD39_RS11245;product=terminus macrodomain insulation protein YfbV;protein_id=WP_000106627.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 198540 199742 . + . ID=gene-AD39_RS11235;Name=ackA;gbkey=Gene;gene=ackA;gene_biotype=protein_coding;locus_tag=AD39_RS11235;old_locus_tag=AD39_2667 NZ_JJLH01000034.1 Protein Homology CDS 198540 199742 . + 0 ID=cds-WP_000095707.1;Parent=gene-AD39_RS11235;Dbxref=GenBank:WP_000095707.1;Name=WP_000095707.1;gbkey=CDS;gene=ackA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129491.1;locus_tag=AD39_RS11235;product=acetate kinase;protein_id=WP_000095707.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 199817 201961 . + . ID=gene-AD39_RS11230;Name=pta;gbkey=Gene;gene=pta;gene_biotype=protein_coding;locus_tag=AD39_RS11230;old_locus_tag=AD39_2668 NZ_JJLH01000034.1 Protein Homology CDS 199817 201961 . + 0 ID=cds-WP_000086722.1;Parent=gene-AD39_RS11230;Dbxref=GenBank:WP_000086722.1;Name=WP_000086722.1;Ontology_term=GO:0016407;gbkey=CDS;gene=pta;go_function=acetyltransferase activity|0016407||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416800.1;locus_tag=AD39_RS11230;product=phosphate acetyltransferase;protein_id=WP_000086722.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 202151 203671 . + . ID=gene-AD39_RS11225;Name=yfcC;gbkey=Gene;gene=yfcC;gene_biotype=protein_coding;locus_tag=AD39_RS11225;old_locus_tag=AD39_2669 NZ_JJLH01000034.1 Protein Homology CDS 202151 203671 . + 0 ID=cds-WP_001274493.1;Parent=gene-AD39_RS11225;Dbxref=GenBank:WP_001274493.1;Name=WP_001274493.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yfcC;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416801.2;locus_tag=AD39_RS11225;product=putative basic amino acid antiporter YfcC;protein_id=WP_001274493.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 203704 204246 . - . ID=gene-AD39_RS11220;Name=yfcD;gbkey=Gene;gene=yfcD;gene_biotype=protein_coding;locus_tag=AD39_RS11220;old_locus_tag=AD39_2670 NZ_JJLH01000034.1 Protein Homology CDS 203704 204246 . - 0 ID=cds-WP_000437935.1;Parent=gene-AD39_RS11220;Dbxref=GenBank:WP_000437935.1;Name=WP_000437935.1;Ontology_term=GO:0016817;gbkey=CDS;gene=yfcD;go_function=hydrolase activity%2C acting on acid anhydrides|0016817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311210.1;locus_tag=AD39_RS11220;product=NUDIX hydrolase YfcD;protein_id=WP_000437935.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 204304 204855 . - . ID=gene-AD39_RS11215;Name=yfcE;gbkey=Gene;gene=yfcE;gene_biotype=protein_coding;locus_tag=AD39_RS11215;old_locus_tag=AD39_2671 NZ_JJLH01000034.1 Protein Homology CDS 204304 204855 . - 0 ID=cds-WP_000772452.1;Parent=gene-AD39_RS11215;Dbxref=GenBank:WP_000772452.1;Name=WP_000772452.1;gbkey=CDS;gene=yfcE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311211.4;locus_tag=AD39_RS11215;product=phosphodiesterase;protein_id=WP_000772452.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 204911 205555 . - . ID=gene-AD39_RS11210;Name=yfcF;gbkey=Gene;gene=yfcF;gene_biotype=protein_coding;locus_tag=AD39_RS11210;old_locus_tag=AD39_2672 NZ_JJLH01000034.1 Protein Homology CDS 204911 205555 . - 0 ID=cds-WP_000042442.1;Parent=gene-AD39_RS11210;Dbxref=GenBank:WP_000042442.1;Name=WP_000042442.1;Ontology_term=GO:0006749;gbkey=CDS;gene=yfcF;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416804.1;locus_tag=AD39_RS11210;product=glutathione transferase;protein_id=WP_000042442.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 205691 206338 . + . ID=gene-AD39_RS11205;Name=yfcG;gbkey=Gene;gene=yfcG;gene_biotype=protein_coding;locus_tag=AD39_RS11205;old_locus_tag=AD39_2673 NZ_JJLH01000034.1 Protein Homology CDS 205691 206338 . + 0 ID=cds-WP_000566471.1;Parent=gene-AD39_RS11205;Dbxref=GenBank:WP_000566471.1;Name=WP_000566471.1;gbkey=CDS;gene=yfcG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416805.1;locus_tag=AD39_RS11205;product=GSH-dependent disulfide bond oxidoreductase;protein_id=WP_000566471.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 206395 206757 . + . ID=gene-AD39_RS11200;Name=folX;gbkey=Gene;gene=folX;gene_biotype=protein_coding;locus_tag=AD39_RS11200;old_locus_tag=AD39_2674 NZ_JJLH01000034.1 Protein Homology CDS 206395 206757 . + 0 ID=cds-WP_000068457.1;Parent=gene-AD39_RS11200;Dbxref=GenBank:WP_000068457.1;Name=WP_000068457.1;Ontology_term=GO:0006760,GO:0004150;gbkey=CDS;gene=folX;go_function=dihydroneopterin aldolase activity|0004150||IEA;go_process=folic acid-containing compound metabolic process|0006760||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311214.1;locus_tag=AD39_RS11200;product=dihydroneopterin triphosphate 2'-epimerase;protein_id=WP_000068457.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 206778 207671 . + . ID=gene-AD39_RS11195;Name=yfcH;gbkey=Gene;gene=yfcH;gene_biotype=protein_coding;locus_tag=AD39_RS11195;old_locus_tag=AD39_2675 NZ_JJLH01000034.1 Protein Homology CDS 206778 207671 . + 0 ID=cds-WP_001028339.1;Parent=gene-AD39_RS11195;Dbxref=GenBank:WP_001028339.1;Name=WP_001028339.1;Ontology_term=GO:0003824;gbkey=CDS;gene=yfcH;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416807.1;locus_tag=AD39_RS11195;product=TIGR01777 family oxidoreductase;protein_id=WP_001028339.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 207719 208621 . - . ID=gene-AD39_RS11190;Name=rpnB;gbkey=Gene;gene=rpnB;gene_biotype=protein_coding;locus_tag=AD39_RS11190;old_locus_tag=AD39_2676 NZ_JJLH01000034.1 Protein Homology CDS 207719 208621 . - 0 ID=cds-WP_000156113.1;Parent=gene-AD39_RS11190;Dbxref=GenBank:WP_000156113.1;Name=WP_000156113.1;gbkey=CDS;gene=rpnB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416808.1;locus_tag=AD39_RS11190;product=recombination-promoting nuclease RpnB;protein_id=WP_000156113.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 208818 209591 . - . ID=gene-AD39_RS11185;Name=hisP;gbkey=Gene;gene=hisP;gene_biotype=protein_coding;locus_tag=AD39_RS11185;old_locus_tag=AD39_2677 NZ_JJLH01000034.1 Protein Homology CDS 208818 209591 . - 0 ID=cds-WP_001293612.1;Parent=gene-AD39_RS11185;Dbxref=GenBank:WP_001293612.1;Name=WP_001293612.1;gbkey=CDS;gene=hisP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311217.1;locus_tag=AD39_RS11185;product=histidine ABC transporter ATP-binding protein HisP;protein_id=WP_001293612.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 209599 210315 . - . ID=gene-AD39_RS11180;Name=hisM;gbkey=Gene;gene=hisM;gene_biotype=protein_coding;locus_tag=AD39_RS11180;old_locus_tag=AD39_2678 NZ_JJLH01000034.1 Protein Homology CDS 209599 210315 . - 0 ID=cds-WP_000569958.1;Parent=gene-AD39_RS11180;Dbxref=GenBank:WP_000569958.1;Name=WP_000569958.1;Ontology_term=GO:0022857,GO:0055052;gbkey=CDS;gene=hisM;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311218.1;locus_tag=AD39_RS11180;product=ABC transporter permease;protein_id=WP_000569958.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 210312 210998 . - . ID=gene-AD39_RS11175;Name=hisQ;gbkey=Gene;gene=hisQ;gene_biotype=protein_coding;locus_tag=AD39_RS11175;old_locus_tag=AD39_2679 NZ_JJLH01000034.1 Protein Homology CDS 210312 210998 . - 0 ID=cds-WP_000965518.1;Parent=gene-AD39_RS11175;Dbxref=GenBank:WP_000965518.1;Name=WP_000965518.1;gbkey=CDS;gene=hisQ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012124147.1;locus_tag=AD39_RS11175;product=histidine ABC transporter permease HisQ;protein_id=WP_000965518.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 211088 211870 . - . ID=gene-AD39_RS11170;Name=hisJ;gbkey=Gene;gene=hisJ;gene_biotype=protein_coding;locus_tag=AD39_RS11170;old_locus_tag=AD39_2680 NZ_JJLH01000034.1 Protein Homology CDS 211088 211870 . - 0 ID=cds-WP_000737621.1;Parent=gene-AD39_RS11170;Dbxref=GenBank:WP_000737621.1;Name=WP_000737621.1;gbkey=CDS;gene=hisJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311220.1;locus_tag=AD39_RS11170;product=histidine ABC transporter substrate-binding protein HisJ;protein_id=WP_000737621.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 212091 212873 . - . ID=gene-AD39_RS11165;Name=argT;gbkey=Gene;gene=argT;gene_biotype=protein_coding;locus_tag=AD39_RS11165;old_locus_tag=AD39_2681 NZ_JJLH01000034.1 Protein Homology CDS 212091 212873 . - 0 ID=cds-WP_000748261.1;Parent=gene-AD39_RS11165;Dbxref=GenBank:WP_000748261.1;Name=WP_000748261.1;gbkey=CDS;gene=argT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311221.1;locus_tag=AD39_RS11165;product=lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT;protein_id=WP_000748261.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 213139 213708 . - . ID=gene-AD39_RS11160;Name=ubiX;gbkey=Gene;gene=ubiX;gene_biotype=protein_coding;locus_tag=AD39_RS11160;old_locus_tag=AD39_2682 NZ_JJLH01000034.1 Protein Homology CDS 213139 213708 . - 0 ID=cds-WP_000825704.1;Parent=gene-AD39_RS11160;Dbxref=GenBank:WP_000825704.1;Name=WP_000825704.1;gbkey=CDS;gene=ubiX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120208.1;locus_tag=AD39_RS11160;product=flavin prenyltransferase UbiX;protein_id=WP_000825704.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 213803 215320 . - . ID=gene-AD39_RS11155;Name=purF;gbkey=Gene;gene=purF;gene_biotype=protein_coding;locus_tag=AD39_RS11155;old_locus_tag=AD39_2683 NZ_JJLH01000034.1 Protein Homology CDS 213803 215320 . - 0 ID=cds-WP_000334220.1;Parent=gene-AD39_RS11155;Dbxref=GenBank:WP_000334220.1;Name=WP_000334220.1;Ontology_term=GO:0009113,GO:0004044;gbkey=CDS;gene=purF;go_function=amidophosphoribosyltransferase activity|0004044||IEA;go_process=purine nucleobase biosynthetic process|0009113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006820991.1;locus_tag=AD39_RS11155;product=amidophosphoribosyltransferase;protein_id=WP_000334220.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 215357 215845 . - . ID=gene-AD39_RS11150;Name=cvpA;gbkey=Gene;gene=cvpA;gene_biotype=protein_coding;locus_tag=AD39_RS11150;old_locus_tag=AD39_2684 NZ_JJLH01000034.1 Protein Homology CDS 215357 215845 . - 0 ID=cds-WP_000262113.1;Parent=gene-AD39_RS11150;Dbxref=GenBank:WP_000262113.1;Name=WP_000262113.1;gbkey=CDS;gene=cvpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311224.1;locus_tag=AD39_RS11150;product=colicin V production protein;protein_id=WP_000262113.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 216104 216766 . - . ID=gene-AD39_RS11145;Name=dedD;gbkey=Gene;gene=dedD;gene_biotype=protein_coding;locus_tag=AD39_RS11145;old_locus_tag=AD39_2685 NZ_JJLH01000034.1 Protein Homology CDS 216104 216766 . - 0 ID=cds-WP_000146992.1;Parent=gene-AD39_RS11145;Dbxref=GenBank:WP_000146992.1;Name=WP_000146992.1;Ontology_term=GO:0032506,GO:0042834,GO:0030428;gbkey=CDS;gene=dedD;go_component=cell septum|0030428||IEA;go_function=peptidoglycan binding|0042834||IEA;go_process=cytokinetic process|0032506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416817.2;locus_tag=AD39_RS11145;product=cell division protein DedD;protein_id=WP_000146992.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 216756 218024 . - . ID=gene-AD39_RS11140;Name=folC;gbkey=Gene;gene=folC;gene_biotype=protein_coding;locus_tag=AD39_RS11140;old_locus_tag=AD39_2686 NZ_JJLH01000034.1 Protein Homology CDS 216756 218024 . - 0 ID=cds-WP_000584571.1;Parent=gene-AD39_RS11140;Dbxref=GenBank:WP_000584571.1;Name=WP_000584571.1;Ontology_term=GO:0009396,GO:0004326,GO:0005524,GO:0016874;gbkey=CDS;gene=folC;go_function=tetrahydrofolylpolyglutamate synthase activity|0004326||IEA,ATP binding|0005524||IEA,ligase activity|0016874||IEA;go_process=folic acid-containing compound biosynthetic process|0009396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416818.1;locus_tag=AD39_RS11140;product=bifunctional tetrahydrofolate synthase/dihydrofolate synthase;protein_id=WP_000584571.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 218094 219008 . - . ID=gene-AD39_RS11135;Name=accD;gbkey=Gene;gene=accD;gene_biotype=protein_coding;locus_tag=AD39_RS11135;old_locus_tag=AD39_2687 NZ_JJLH01000034.1 Protein Homology CDS 218094 219008 . - 0 ID=cds-WP_000118404.1;Parent=gene-AD39_RS11135;Dbxref=GenBank:WP_000118404.1;Name=WP_000118404.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accD;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311227.1;locus_tag=AD39_RS11135;product=acetyl-CoA carboxylase%2C carboxyltransferase subunit beta;protein_id=WP_000118404.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 219164 219823 . - . ID=gene-AD39_RS11130;Name=dedA;gbkey=Gene;gene=dedA;gene_biotype=protein_coding;locus_tag=AD39_RS11130;old_locus_tag=AD39_2688 NZ_JJLH01000034.1 Protein Homology CDS 219164 219823 . - 0 ID=cds-WP_000364331.1;Parent=gene-AD39_RS11130;Dbxref=GenBank:WP_000364331.1;Name=WP_000364331.1;gbkey=CDS;gene=dedA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311228.1;locus_tag=AD39_RS11130;product=DedA family protein;protein_id=WP_000364331.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 219906 220718 . - . ID=gene-AD39_RS11125;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;locus_tag=AD39_RS11125;old_locus_tag=AD39_2689 NZ_JJLH01000034.1 Protein Homology CDS 219906 220718 . - 0 ID=cds-WP_001283581.1;Parent=gene-AD39_RS11125;Dbxref=GenBank:WP_001283581.1;Name=WP_001283581.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truA;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708200.1;locus_tag=AD39_RS11125;product=tRNA pseudouridine(38-40) synthase TruA;protein_id=WP_001283581.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 220718 221731 . - . ID=gene-AD39_RS11120;Name=usg;gbkey=Gene;gene=usg;gene_biotype=protein_coding;locus_tag=AD39_RS11120;old_locus_tag=AD39_2690 NZ_JJLH01000034.1 Protein Homology CDS 220718 221731 . - 0 ID=cds-WP_001289165.1;Parent=gene-AD39_RS11120;Dbxref=GenBank:WP_001289165.1;Name=WP_001289165.1;Ontology_term=GO:0008652,GO:0016620,GO:0046983,GO:0051287;gbkey=CDS;gene=usg;go_function=oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor|0016620||IEA,protein dimerization activity|0046983||IEA,NAD binding|0051287||IEA;go_process=amino acid biosynthetic process|0008652||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416822.1;locus_tag=AD39_RS11120;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_001289165.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 221797 222933 . - . ID=gene-AD39_RS11115;Name=pdxB;gbkey=Gene;gene=pdxB;gene_biotype=protein_coding;locus_tag=AD39_RS11115;old_locus_tag=AD39_2691 NZ_JJLH01000034.1 Protein Homology CDS 221797 222933 . - 0 ID=cds-WP_000699121.1;Parent=gene-AD39_RS11115;Dbxref=GenBank:WP_000699121.1;Name=WP_000699121.1;Ontology_term=GO:0008615,GO:0033711,GO:0046983,GO:0051287;gbkey=CDS;gene=pdxB;go_function=4-phosphoerythronate dehydrogenase activity|0033711||IEA,protein dimerization activity|0046983||IEA,NAD binding|0051287||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708202.1;locus_tag=AD39_RS11115;product=4-phosphoerythronate dehydrogenase PdxB;protein_id=WP_000699121.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 223032 224027 . + . ID=gene-AD39_RS11110;Name=flk;gbkey=Gene;gene=flk;gene_biotype=protein_coding;locus_tag=AD39_RS11110;old_locus_tag=AD39_2692 NZ_JJLH01000034.1 Protein Homology CDS 223032 224027 . + 0 ID=cds-WP_000615821.1;Parent=gene-AD39_RS11110;Dbxref=GenBank:WP_000615821.1;Name=WP_000615821.1;Ontology_term=GO:0010468,GO:0016020;gbkey=CDS;gene=flk;go_component=membrane|0016020||IEA;go_process=regulation of gene expression|0010468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416824.1;locus_tag=AD39_RS11110;product=flagella biosynthesis regulator Flk;protein_id=WP_000615821.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 224024 225202 . - . ID=gene-AD39_RS11105;Name=yfcJ;gbkey=Gene;gene=yfcJ;gene_biotype=protein_coding;locus_tag=AD39_RS11105;old_locus_tag=AD39_2693 NZ_JJLH01000034.1 Protein Homology CDS 224024 225202 . - 0 ID=cds-WP_000127758.1;Parent=gene-AD39_RS11105;Dbxref=GenBank:WP_000127758.1;Name=WP_000127758.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=yfcJ;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416825.1;locus_tag=AD39_RS11105;product=arabinose transporter;protein_id=WP_000127758.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 225486 226706 . - . ID=gene-AD39_RS11100;Name=fabB;gbkey=Gene;gene=fabB;gene_biotype=protein_coding;locus_tag=AD39_RS11100;old_locus_tag=AD39_2694 NZ_JJLH01000034.1 Protein Homology CDS 225486 226706 . - 0 ID=cds-WP_000817178.1;Parent=gene-AD39_RS11100;Dbxref=GenBank:WP_000817178.1;Name=WP_000817178.1;Ontology_term=GO:0006633,GO:0004315;gbkey=CDS;gene=fabB;go_function=3-oxoacyl-[acyl-carrier-protein] synthase activity|0004315||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416826.1;locus_tag=AD39_RS11100;product=beta-ketoacyl-ACP synthase I;protein_id=WP_000817178.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 226865 228871 . + . ID=gene-AD39_RS11095;Name=mnmC;gbkey=Gene;gene=mnmC;gene_biotype=protein_coding;locus_tag=AD39_RS11095;old_locus_tag=AD39_2695 NZ_JJLH01000034.1 Protein Homology CDS 226865 228871 . + 0 ID=cds-WP_000683799.1;Parent=gene-AD39_RS11095;Dbxref=GenBank:WP_000683799.1;Name=WP_000683799.1;Ontology_term=GO:0008033,GO:0004808,GO:0016491;gbkey=CDS;gene=mnmC;go_function=tRNA (5-methylaminomethyl-2-thiouridylate)(34)-methyltransferase activity|0004808||IEA,oxidoreductase activity|0016491||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416827.4;locus_tag=AD39_RS11095;product=bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;protein_id=WP_000683799.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 228992 229270 . - . ID=gene-AD39_RS11090;Name=yfcL;gbkey=Gene;gene=yfcL;gene_biotype=protein_coding;locus_tag=AD39_RS11090;old_locus_tag=AD39_2696 NZ_JJLH01000034.1 Protein Homology CDS 228992 229270 . - 0 ID=cds-WP_000559764.1;Parent=gene-AD39_RS11090;Dbxref=GenBank:WP_000559764.1;Name=WP_000559764.1;gbkey=CDS;gene=yfcL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311236.1;locus_tag=AD39_RS11090;product=YfcL family protein;protein_id=WP_000559764.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 229304 229852 . - . ID=gene-AD39_RS11085;Name=epmC;gbkey=Gene;gene=epmC;gene_biotype=protein_coding;locus_tag=AD39_RS11085;old_locus_tag=AD39_2697 NZ_JJLH01000034.1 Protein Homology CDS 229304 229852 . - 0 ID=cds-WP_001533119.1;Parent=gene-AD39_RS11085;Dbxref=GenBank:WP_001533119.1;Name=WP_001533119.1;gbkey=CDS;gene=epmC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416829.1;locus_tag=AD39_RS11085;product=elongation factor P hydroxylase;protein_id=WP_001533119.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 229852 230661 . - . ID=gene-AD39_RS11080;Name=yfcA;gbkey=Gene;gene=yfcA;gene_biotype=protein_coding;locus_tag=AD39_RS11080;old_locus_tag=AD39_2698 NZ_JJLH01000034.1 Protein Homology CDS 229852 230661 . - 0 ID=cds-WP_000447359.1;Parent=gene-AD39_RS11080;Dbxref=GenBank:WP_000447359.1;Name=WP_000447359.1;gbkey=CDS;gene=yfcA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311238.1;locus_tag=AD39_RS11080;product=sulfite exporter TauE/SafE family protein;protein_id=WP_000447359.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 230661 231485 . - . ID=gene-AD39_RS11075;Name=mepA;gbkey=Gene;gene=mepA;gene_biotype=protein_coding;locus_tag=AD39_RS11075;old_locus_tag=AD39_2699 NZ_JJLH01000034.1 Protein Homology CDS 230661 231485 . - 0 ID=cds-WP_032264073.1;Parent=gene-AD39_RS11075;Dbxref=GenBank:WP_032264073.1;Name=WP_032264073.1;Ontology_term=GO:0006508,GO:0004252,GO:0030288;gbkey=CDS;gene=mepA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416831.1;locus_tag=AD39_RS11075;product=penicillin-insensitive murein endopeptidase;protein_id=WP_032264073.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 231489 232574 . - . ID=gene-AD39_RS11070;Name=aroC;gbkey=Gene;gene=aroC;gene_biotype=protein_coding;locus_tag=AD39_RS11070;old_locus_tag=AD39_2700 NZ_JJLH01000034.1 Protein Homology CDS 231489 232574 . - 0 ID=cds-WP_001456379.1;Parent=gene-AD39_RS11070;Dbxref=GenBank:WP_001456379.1;Name=WP_001456379.1;Ontology_term=GO:0009073,GO:0004107;gbkey=CDS;gene=aroC;go_function=chorismate synthase activity|0004107||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129642.1;locus_tag=AD39_RS11070;product=chorismate synthase;protein_id=WP_001456379.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 232609 233541 . - . ID=gene-AD39_RS11065;Name=prmB;gbkey=Gene;gene=prmB;gene_biotype=protein_coding;locus_tag=AD39_RS11065;old_locus_tag=AD39_2701 NZ_JJLH01000034.1 Protein Homology CDS 232609 233541 . - 0 ID=cds-WP_032240686.1;Parent=gene-AD39_RS11065;Dbxref=GenBank:WP_032240686.1;Name=WP_032240686.1;Ontology_term=GO:0018364,GO:0042273,GO:0008276,GO:0008757;gbkey=CDS;gene=prmB;go_function=protein methyltransferase activity|0008276||IEA,S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=peptidyl-glutamine methylation|0018364||IEA,ribosomal large subunit biogenesis|0042273||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129736.1;locus_tag=AD39_RS11065;product=50S ribosomal protein L3 N(5)-glutamine methyltransferase;protein_id=WP_032240686.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 233707 234258 . + . ID=gene-AD39_RS11060;Name=smrB;gbkey=Gene;gene=smrB;gene_biotype=protein_coding;locus_tag=AD39_RS11060;old_locus_tag=AD39_2702 NZ_JJLH01000034.1 Protein Homology CDS 233707 234258 . + 0 ID=cds-WP_000730806.1;Parent=gene-AD39_RS11060;Dbxref=GenBank:WP_000730806.1;Name=WP_000730806.1;gbkey=CDS;gene=smrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416834.1;locus_tag=AD39_RS11060;product=endonuclease SmrB;protein_id=WP_000730806.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 234380 235252 . - . ID=gene-AD39_RS11055;Name=AD39_RS11055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS11055;old_locus_tag=AD39_2703 NZ_JJLH01000034.1 Protein Homology CDS 234380 235252 . - 0 ID=cds-WP_001356216.1;Parent=gene-AD39_RS11055;Dbxref=GenBank:WP_001356216.1;Name=WP_001356216.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001397279.1;locus_tag=AD39_RS11055;product=StfH/YfcO family fimbrial adhesin;protein_id=WP_001356216.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 235239 235763 . - . ID=gene-AD39_RS11050;Name=AD39_RS11050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS11050;old_locus_tag=AD39_2704 NZ_JJLH01000034.1 Protein Homology CDS 235239 235763 . - 0 ID=cds-WP_000730291.1;Parent=gene-AD39_RS11050;Dbxref=GenBank:WP_000730291.1;Name=WP_000730291.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708215.1;locus_tag=AD39_RS11050;product=fimbrial protein;protein_id=WP_000730291.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 235760 236230 . - . ID=gene-AD39_RS0124755;Name=AD39_RS0124755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124755;old_locus_tag=AD39_2705 NZ_JJLH01000034.1 Protein Homology CDS 235760 236230 . - 0 ID=cds-WP_000822649.1;Parent=gene-AD39_RS0124755;Dbxref=GenBank:WP_000822649.1;Name=WP_000822649.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708216.1;locus_tag=AD39_RS0124755;product=fimbrial protein;protein_id=WP_000822649.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 236227 236775 . - . ID=gene-AD39_RS0124760;Name=AD39_RS0124760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124760 NZ_JJLH01000034.1 Protein Homology CDS 236227 236775 . - 0 ID=cds-WP_000842082.1;Parent=gene-AD39_RS0124760;Dbxref=GenBank:WP_000842082.1;Name=WP_000842082.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708217.1;locus_tag=AD39_RS0124760;product=fimbrial protein;protein_id=WP_000842082.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 236750 237502 . - . ID=gene-AD39_RS11045;Name=yfcS;gbkey=Gene;gene=yfcS;gene_biotype=protein_coding;locus_tag=AD39_RS11045;old_locus_tag=AD39_2708 NZ_JJLH01000034.1 Protein Homology CDS 236750 237502 . - 0 ID=cds-WP_032283408.1;Parent=gene-AD39_RS11045;Dbxref=GenBank:WP_032283408.1;Name=WP_032283408.1;Ontology_term=GO:0071555,GO:0030288;gbkey=CDS;gene=yfcS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416839.1;locus_tag=AD39_RS11045;product=fimbria/pilus periplasmic chaperone;protein_id=WP_032283408.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 237522 240167 . - . ID=gene-AD39_RS11040;Name=yfcU;gbkey=Gene;gene=yfcU;gene_biotype=protein_coding;locus_tag=AD39_RS11040;old_locus_tag=AD39_2709 NZ_JJLH01000034.1 Protein Homology CDS 237522 240167 . - 0 ID=cds-WP_001471934.1;Parent=gene-AD39_RS11040;Dbxref=GenBank:WP_001471934.1;Name=WP_001471934.1;gbkey=CDS;gene=yfcU;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001112832.1;locus_tag=AD39_RS11040;product=fimbrial usher protein YfcU;protein_id=WP_001471934.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 240249 240812 . - . ID=gene-AD39_RS11035;Name=yfcV;gbkey=Gene;gene=yfcV;gene_biotype=protein_coding;locus_tag=AD39_RS11035;old_locus_tag=AD39_2710 NZ_JJLH01000034.1 Protein Homology CDS 240249 240812 . - 0 ID=cds-WP_000033328.1;Parent=gene-AD39_RS11035;Dbxref=GenBank:WP_000033328.1;Name=WP_000033328.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=yfcV;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708219.1;locus_tag=AD39_RS11035;product=fimbrial protein;protein_id=WP_000033328.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 241487 241972 . - . ID=gene-AD39_RS0124765;Name=sixA;gbkey=Gene;gene=sixA;gene_biotype=protein_coding;locus_tag=AD39_RS0124765;old_locus_tag=AD39_2711 NZ_JJLH01000034.1 Protein Homology CDS 241487 241972 . - 0 ID=cds-WP_001195819.1;Parent=gene-AD39_RS0124765;Dbxref=GenBank:WP_001195819.1;Name=WP_001195819.1;Ontology_term=GO:0036211,GO:0101006,GO:0005737;gbkey=CDS;gene=sixA;go_component=cytoplasm|0005737||IEA;go_function=protein histidine phosphatase activity|0101006||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416842.1;locus_tag=AD39_RS0124765;product=phosphohistidine phosphatase SixA;protein_id=WP_001195819.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 242175 244319 . - . ID=gene-AD39_RS11030;Name=fadJ;gbkey=Gene;gene=fadJ;gene_biotype=protein_coding;locus_tag=AD39_RS11030;old_locus_tag=AD39_2712 NZ_JJLH01000034.1 Protein Homology CDS 242175 244319 . - 0 ID=cds-WP_023155567.1;Parent=gene-AD39_RS11030;Dbxref=GenBank:WP_023155567.1;Name=WP_023155567.1;Ontology_term=GO:0009062,GO:0003857,GO:0004300,GO:0008692,GO:0051287;gbkey=CDS;gene=fadJ;go_function=3-hydroxyacyl-CoA dehydrogenase activity|0003857||IEA,enoyl-CoA hydratase activity|0004300||IEA,3-hydroxybutyryl-CoA epimerase activity|0008692||IEA,NAD binding|0051287||IEA;go_process=fatty acid catabolic process|0009062||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708223.1;locus_tag=AD39_RS11030;product=fatty acid oxidation complex subunit alpha FadJ;protein_id=WP_023155567.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 244319 245629 . - . ID=gene-AD39_RS11025;Name=fadI;gbkey=Gene;gene=fadI;gene_biotype=protein_coding;locus_tag=AD39_RS11025;old_locus_tag=AD39_2713 NZ_JJLH01000034.1 Protein Homology CDS 244319 245629 . - 0 ID=cds-WP_032287584.1;Parent=gene-AD39_RS11025;Dbxref=GenBank:WP_032287584.1;Name=WP_032287584.1;Ontology_term=GO:0006631,GO:0016042,GO:0003988,GO:0005737;gbkey=CDS;gene=fadI;go_component=cytoplasm|0005737||IEA;go_function=acetyl-CoA C-acyltransferase activity|0003988||IEA;go_process=fatty acid metabolic process|0006631||IEA,lipid catabolic process|0016042||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416844.1;locus_tag=AD39_RS11025;product=acetyl-CoA C-acyltransferase FadI;protein_id=WP_032287584.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 245809 246093 . - . ID=gene-AD39_RS11020;Name=yfcZ;gbkey=Gene;gene=yfcZ;gene_biotype=protein_coding;locus_tag=AD39_RS11020;old_locus_tag=AD39_2714 NZ_JJLH01000034.1 Protein Homology CDS 245809 246093 . - 0 ID=cds-WP_000030901.1;Parent=gene-AD39_RS11020;Dbxref=GenBank:WP_000030901.1;Name=WP_000030901.1;gbkey=CDS;gene=yfcZ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005129756.1;locus_tag=AD39_RS11020;product=YfcZ/YiiS family protein;protein_id=WP_000030901.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 246465 247805 . + . ID=gene-AD39_RS11015;Name=fadL;gbkey=Gene;gene=fadL;gene_biotype=protein_coding;locus_tag=AD39_RS11015;old_locus_tag=AD39_2715 NZ_JJLH01000034.1 Protein Homology CDS 246465 247805 . + 0 ID=cds-WP_001296861.1;Parent=gene-AD39_RS11015;Dbxref=GenBank:WP_001296861.1;Name=WP_001296861.1;gbkey=CDS;gene=fadL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708225.2;locus_tag=AD39_RS11015;product=long-chain fatty acid transporter FadL;protein_id=WP_001296861.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 248170 249228 . + . ID=gene-AD39_RS11010;Name=yfdF;gbkey=Gene;gene=yfdF;gene_biotype=protein_coding;locus_tag=AD39_RS11010;old_locus_tag=AD39_2716 NZ_JJLH01000034.1 Protein Homology CDS 248170 249228 . + 0 ID=cds-WP_032178642.1;Parent=gene-AD39_RS11010;Dbxref=GenBank:WP_032178642.1;Name=WP_032178642.1;gbkey=CDS;gene=yfdF;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001530666.1;locus_tag=AD39_RS11010;product=protein YfdF;protein_id=WP_032178642.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 249410 250165 . - . ID=gene-AD39_RS11005;Name=mlaA;gbkey=Gene;gene=mlaA;gene_biotype=protein_coding;locus_tag=AD39_RS11005;old_locus_tag=AD39_2717 NZ_JJLH01000034.1 Protein Homology CDS 249410 250165 . - 0 ID=cds-WP_000776768.1;Parent=gene-AD39_RS11005;Dbxref=GenBank:WP_000776768.1;Name=WP_000776768.1;Ontology_term=GO:0016020;gbkey=CDS;gene=mlaA;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311256.1;locus_tag=AD39_RS11005;product=phospholipid-binding lipoprotein MlaA;protein_id=WP_000776768.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 250459 251391 . + . ID=gene-AD39_RS11000;Name=yfdC;gbkey=Gene;gene=yfdC;gene_biotype=protein_coding;locus_tag=AD39_RS11000;old_locus_tag=AD39_2719 NZ_JJLH01000034.1 Protein Homology CDS 250459 251391 . + 0 ID=cds-WP_000368131.1;Parent=gene-AD39_RS11000;Dbxref=GenBank:WP_000368131.1;Name=WP_000368131.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yfdC;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311257.1;locus_tag=AD39_RS11000;product=formate/nitrite transporter family protein;protein_id=WP_000368131.1;transl_table=11 NZ_JJLH01000034.1 RefSeq gene 251467 251541 . + . ID=gene-AD39_RS10995;Name=AD39_RS10995;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10995;old_locus_tag=AD39_2720 NZ_JJLH01000034.1 tRNAscan-SE tRNA 251467 251541 . + . ID=rna-AD39_RS10995;Parent=gene-AD39_RS10995;anticodon=(pos:251500..251502);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10995;product=tRNA-Arg NZ_JJLH01000034.1 tRNAscan-SE exon 251467 251541 . + . ID=exon-AD39_RS10995-1;Parent=rna-AD39_RS10995;anticodon=(pos:251500..251502);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10995;product=tRNA-Arg NZ_JJLH01000034.1 RefSeq gene 251703 252852 . + . ID=gene-AD39_RS10990;Name=intS;end_range=252852,.;gbkey=Gene;gene=intS;gene_biotype=protein_coding;locus_tag=AD39_RS10990;old_locus_tag=AD39_2721;partial=true NZ_JJLH01000034.1 Protein Homology CDS 251703 252852 . + 0 ID=cds-WP_032287586.1;Parent=gene-AD39_RS10990;Dbxref=GenBank:WP_032287586.1;Name=WP_032287586.1;end_range=252852,.;gbkey=CDS;gene=intS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416850.1;locus_tag=AD39_RS10990;partial=true;product=prophage integrase IntS;protein_id=WP_032287586.1;transl_table=11 ##sequence-region NZ_JJLH01000035.1 1 5374 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000035.1 RefSeq region 1 5374 . + . ID=NZ_JJLH01000035.1:1..5374;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000035.1 RefSeq pseudogene 129 493 . - . ID=gene-AD39_RS30205;Name=AD39_RS30205;end_range=493,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30205;partial=true;pseudo=true;start_range=.,129 NZ_JJLH01000035.1 Protein Homology CDS 129 493 . - 0 ID=cds-AD39_RS30205;Parent=gene-AD39_RS30205;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0015074;end_range=493,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611151.1;locus_tag=AD39_RS30205;partial=true;product=DDE-type integrase/transposase/recombinase;pseudo=true;start_range=.,129;transl_table=11 NZ_JJLH01000035.1 RefSeq gene 806 1000 . - . ID=gene-AD39_RS10980;Name=AD39_RS10980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10980;old_locus_tag=AD39_2723 NZ_JJLH01000035.1 Protein Homology CDS 806 1000 . - 0 ID=cds-WP_001004881.1-2;Parent=gene-AD39_RS10980;Dbxref=GenBank:WP_001004881.1;Name=WP_001004881.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309391.1;locus_tag=AD39_RS10980;product=hypothetical protein;protein_id=WP_001004881.1;transl_table=11 NZ_JJLH01000035.1 RefSeq gene 1328 1516 . - . ID=gene-AD39_RS29460;Name=AD39_RS29460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29460 NZ_JJLH01000035.1 GeneMarkS-2+ CDS 1328 1516 . - 0 ID=cds-WP_000180465.1-2;Parent=gene-AD39_RS29460;Dbxref=GenBank:WP_000180465.1;Name=WP_000180465.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS29460;product=hypothetical protein;protein_id=WP_000180465.1;transl_table=11 NZ_JJLH01000035.1 RefSeq pseudogene 1821 2091 . + . ID=gene-AD39_RS29465;Name=AD39_RS29465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29465;old_locus_tag=AD39_2727;partial=true;pseudo=true;start_range=.,1821 NZ_JJLH01000035.1 Protein Homology CDS 1821 2091 . + 0 ID=cds-AD39_RS29465;Parent=gene-AD39_RS29465;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001593693.1;locus_tag=AD39_RS29465;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1821;transl_table=11 NZ_JJLH01000035.1 RefSeq gene 2157 2354 . + . ID=gene-AD39_RS10970;Name=AD39_RS10970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10970;old_locus_tag=AD39_2728 NZ_JJLH01000035.1 Protein Homology CDS 2157 2354 . + 0 ID=cds-WP_000958487.1;Parent=gene-AD39_RS10970;Dbxref=GenBank:WP_000958487.1;Name=WP_000958487.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502603.1;locus_tag=AD39_RS10970;product=helix-turn-helix transcriptional regulator;protein_id=WP_000958487.1;transl_table=11 NZ_JJLH01000035.1 RefSeq gene 3084 4208 . + . ID=gene-AD39_RS10965;Name=AD39_RS10965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10965;old_locus_tag=AD39_2730 NZ_JJLH01000035.1 Protein Homology CDS 3084 4208 . + 0 ID=cds-WP_001231525.1;Parent=gene-AD39_RS10965;Dbxref=GenBank:WP_001231525.1;Name=WP_001231525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309397.1;locus_tag=AD39_RS10965;product=nucleotide disphospho-sugar-binding domain-containing protein;protein_id=WP_001231525.1;transl_table=11 NZ_JJLH01000035.1 RefSeq pseudogene 4350 4610 . - . ID=gene-AD39_RS27330;Name=AD39_RS27330;end_range=4610,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS27330;partial=true;pseudo=true NZ_JJLH01000035.1 Protein Homology CDS 4350 4610 . - 0 ID=cds-AD39_RS27330;Parent=gene-AD39_RS27330;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=4610,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001390635.1;locus_tag=AD39_RS27330;partial=true;product=alpha/beta hydrolase-fold protein;pseudo=true;transl_table=11 NZ_JJLH01000035.1 RefSeq gene 4627 5325 . - . ID=gene-AD39_RS28570;Name=AD39_RS28570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28570;old_locus_tag=AD39_2732 NZ_JJLH01000035.1 Protein Homology CDS 4627 5325 . - 0 ID=cds-WP_077757164.1;Parent=gene-AD39_RS28570;Dbxref=GenBank:WP_077757164.1;Name=WP_077757164.1;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_086558153.1;locus_tag=AD39_RS28570;product=IS1 family transposase;protein_id=WP_077757164.1;transl_table=11 ##sequence-region NZ_JJLH01000036.1 1 82068 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000036.1 RefSeq region 1 82068 . + . ID=NZ_JJLH01000036.1:1..82068;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000036.1 RefSeq gene 177 1334 . + . ID=gene-AD39_RS10960;Name=intS;gbkey=Gene;gene=intS;gene_biotype=protein_coding;locus_tag=AD39_RS10960;old_locus_tag=AD39_2733 NZ_JJLH01000036.1 Protein Homology CDS 177 1334 . + 0 ID=cds-WP_032283409.1;Parent=gene-AD39_RS10960;Dbxref=GenBank:WP_032283409.1;Name=WP_032283409.1;gbkey=CDS;gene=intS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416850.1;locus_tag=AD39_RS10960;product=prophage integrase IntS;protein_id=WP_032283409.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 1525 2592 . + . ID=gene-AD39_RS10955;Name=AD39_RS10955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10955;old_locus_tag=AD39_2734 NZ_JJLH01000036.1 Protein Homology CDS 1525 2592 . + 0 ID=cds-WP_032283410.1;Parent=gene-AD39_RS10955;Dbxref=GenBank:WP_032283410.1;Name=WP_032283410.1;Ontology_term=GO:0016747;gbkey=CDS;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;inference=COORDINATES: protein motif:HMM:NF013884.6;locus_tag=AD39_RS10955;product=acyltransferase family protein;protein_id=WP_032283410.1;transl_table=11 NZ_JJLH01000036.1 RefSeq pseudogene 3924 4287 . - . ID=gene-AD39_RS30210;Name=AD39_RS30210;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30210;partial=true;pseudo=true;start_range=.,3924 NZ_JJLH01000036.1 Protein Homology CDS 3924 4287 . - 0 ID=cds-AD39_RS30210;Parent=gene-AD39_RS30210;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000129899.1;locus_tag=AD39_RS30210;partial=true;product=phage head-binding domain-containing protein;pseudo=true;start_range=.,3924;transl_table=11 NZ_JJLH01000036.1 RefSeq pseudogene 4409 4668 . + . ID=gene-AD39_RS0124795;Name=AD39_RS0124795;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0124795;pseudo=true NZ_JJLH01000036.1 Protein Homology CDS 4409 4668 . + 0 ID=cds-AD39_RS0124795;Parent=gene-AD39_RS0124795;Note=frameshifted%3B internal stop;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000287059.1;locus_tag=AD39_RS0124795;product=Arc family DNA-binding protein;pseudo=true;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 4758 6755 . - . ID=gene-AD39_RS10950;Name=AD39_RS10950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10950;old_locus_tag=AD39_2736 NZ_JJLH01000036.1 Protein Homology CDS 4758 6755 . - 0 ID=cds-WP_032283411.1;Parent=gene-AD39_RS10950;Dbxref=GenBank:WP_032283411.1;Name=WP_032283411.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001605580.1;locus_tag=AD39_RS10950;product=hypothetical protein;protein_id=WP_032283411.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 6755 8149 . - . ID=gene-AD39_RS10945;Name=AD39_RS10945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10945;old_locus_tag=AD39_2737 NZ_JJLH01000036.1 Protein Homology CDS 6755 8149 . - 0 ID=cds-WP_032283413.1;Parent=gene-AD39_RS10945;Dbxref=GenBank:WP_032283413.1;Name=WP_032283413.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000246948.1;locus_tag=AD39_RS10945;product=phage DNA ejection protein;protein_id=WP_032283413.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 8162 8821 . - . ID=gene-AD39_RS10940;Name=AD39_RS10940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10940;old_locus_tag=AD39_2738 NZ_JJLH01000036.1 Protein Homology CDS 8162 8821 . - 0 ID=cds-WP_001569058.1;Parent=gene-AD39_RS10940;Dbxref=GenBank:WP_001569058.1;Name=WP_001569058.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311260.1;locus_tag=AD39_RS10940;product=hypothetical protein;protein_id=WP_001569058.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 8808 9275 . - . ID=gene-AD39_RS10935;Name=AD39_RS10935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10935;old_locus_tag=AD39_2739 NZ_JJLH01000036.1 Protein Homology CDS 8808 9275 . - 0 ID=cds-WP_032283415.1;Parent=gene-AD39_RS10935;Dbxref=GenBank:WP_032283415.1;Name=WP_032283415.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311261.1;locus_tag=AD39_RS10935;product=DUF2824 family protein;protein_id=WP_032283415.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 9275 10123 . - . ID=gene-AD39_RS10930;Name=AD39_RS10930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10930;old_locus_tag=AD39_2740 NZ_JJLH01000036.1 Protein Homology CDS 9275 10123 . - 0 ID=cds-WP_032283416.1;Parent=gene-AD39_RS10930;Dbxref=GenBank:WP_032283416.1;Name=WP_032283416.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706177.1;locus_tag=AD39_RS10930;product=tail needle knob protein;protein_id=WP_032283416.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 10123 11541 . - . ID=gene-AD39_RS10925;Name=AD39_RS10925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10925;old_locus_tag=AD39_2741 NZ_JJLH01000036.1 Protein Homology CDS 10123 11541 . - 0 ID=cds-WP_032283417.1;Parent=gene-AD39_RS10925;Dbxref=GenBank:WP_032283417.1;Name=WP_032283417.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706176.1;locus_tag=AD39_RS10925;product=packaged DNA stabilization protein gp10;protein_id=WP_032283417.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 11551 12012 . - . ID=gene-AD39_RS10920;Name=AD39_RS10920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10920;old_locus_tag=AD39_2742 NZ_JJLH01000036.1 Protein Homology CDS 11551 12012 . - 0 ID=cds-WP_001140510.1;Parent=gene-AD39_RS10920;Dbxref=GenBank:WP_001140510.1;Name=WP_001140510.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001597923.1;locus_tag=AD39_RS10920;product=packaged DNA stabilization gp4 family protein;protein_id=WP_001140510.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 11993 12181 . - . ID=gene-AD39_RS10915;Name=AD39_RS10915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10915;old_locus_tag=AD39_2743 NZ_JJLH01000036.1 Protein Homology CDS 11993 12181 . - 0 ID=cds-WP_032283418.1;Parent=gene-AD39_RS10915;Dbxref=GenBank:WP_032283418.1;Name=WP_032283418.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001389518.1;locus_tag=AD39_RS10915;product=hypothetical protein;protein_id=WP_032283418.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 12223 13476 . - . ID=gene-AD39_RS10910;Name=AD39_RS10910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10910;old_locus_tag=AD39_2744 NZ_JJLH01000036.1 Protein Homology CDS 12223 13476 . - 0 ID=cds-WP_032283420.1;Parent=gene-AD39_RS10910;Dbxref=GenBank:WP_032283420.1;Name=WP_032283420.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000013262.1;locus_tag=AD39_RS10910;product=P22 phage major capsid protein family protein;protein_id=WP_032283420.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 13495 14388 . - . ID=gene-AD39_RS10905;Name=AD39_RS10905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10905;old_locus_tag=AD39_2745 NZ_JJLH01000036.1 Protein Homology CDS 13495 14388 . - 0 ID=cds-WP_032283422.1;Parent=gene-AD39_RS10905;Dbxref=GenBank:WP_032283422.1;Name=WP_032283422.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001734493.1;locus_tag=AD39_RS10905;product=scaffolding protein;protein_id=WP_032283422.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 14479 16680 . - . ID=gene-AD39_RS10900;Name=AD39_RS10900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10900;old_locus_tag=AD39_2746 NZ_JJLH01000036.1 Protein Homology CDS 14479 16680 . - 0 ID=cds-WP_032283423.1;Parent=gene-AD39_RS10900;Dbxref=GenBank:WP_032283423.1;Name=WP_032283423.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001597925.1;locus_tag=AD39_RS10900;product=portal protein;protein_id=WP_032283423.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 16680 18176 . - . ID=gene-AD39_RS10895;Name=AD39_RS10895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10895;old_locus_tag=AD39_2747 NZ_JJLH01000036.1 Protein Homology CDS 16680 18176 . - 0 ID=cds-WP_032287588.1;Parent=gene-AD39_RS10895;Dbxref=GenBank:WP_032287588.1;Name=WP_032287588.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000417848.1;locus_tag=AD39_RS10895;product=terminase large subunit domain-containing protein;protein_id=WP_032287588.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 18154 18642 . - . ID=gene-AD39_RS0124800;Name=AD39_RS0124800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124800 NZ_JJLH01000036.1 Protein Homology CDS 18154 18642 . - 0 ID=cds-WP_032283425.1;Parent=gene-AD39_RS0124800;Dbxref=GenBank:WP_032283425.1;Name=WP_032283425.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000729926.1;locus_tag=AD39_RS0124800;product=DNA-packaging protein;protein_id=WP_032283425.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 18648 19136 . - . ID=gene-AD39_RS10890;Name=AD39_RS10890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10890;old_locus_tag=AD39_2749 NZ_JJLH01000036.1 Protein Homology CDS 18648 19136 . - 0 ID=cds-WP_032283426.1;Parent=gene-AD39_RS10890;Dbxref=GenBank:WP_032283426.1;Name=WP_032283426.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001549452.1;locus_tag=AD39_RS10890;product=hypothetical protein;protein_id=WP_032283426.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 19138 19380 . - . ID=gene-AD39_RS10885;Name=AD39_RS10885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10885;old_locus_tag=AD39_2750 NZ_JJLH01000036.1 Protein Homology CDS 19138 19380 . - 0 ID=cds-WP_000807780.1;Parent=gene-AD39_RS10885;Dbxref=GenBank:WP_000807780.1;Name=WP_000807780.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001561773.1;locus_tag=AD39_RS10885;product=DUF2560 family protein;protein_id=WP_000807780.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 19684 20163 . - . ID=gene-AD39_RS10880;Name=AD39_RS10880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10880;old_locus_tag=AD39_2751 NZ_JJLH01000036.1 Protein Homology CDS 19684 20163 . - 0 ID=cds-WP_032283428.1;Parent=gene-AD39_RS10880;Dbxref=GenBank:WP_032283428.1;Name=WP_032283428.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001535928.1;locus_tag=AD39_RS10880;product=DUF2829 domain-containing protein;protein_id=WP_032283428.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 20246 20398 . - . ID=gene-AD39_RS29125;Name=AD39_RS29125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29125 NZ_JJLH01000036.1 Protein Homology CDS 20246 20398 . - 0 ID=cds-WP_032283430.1;Parent=gene-AD39_RS29125;Dbxref=GenBank:WP_032283430.1;Name=WP_032283430.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308849.1;locus_tag=AD39_RS29125;product=hypothetical protein;protein_id=WP_032283430.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 20386 20823 . - . ID=gene-AD39_RS29130;Name=AD39_RS29130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29130;old_locus_tag=AD39_2752 NZ_JJLH01000036.1 Protein Homology CDS 20386 20823 . - 0 ID=cds-WP_032283431.1;Parent=gene-AD39_RS29130;Dbxref=GenBank:WP_032283431.1;Name=WP_032283431.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009453323.1;locus_tag=AD39_RS29130;product=lysis protein;protein_id=WP_032283431.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 20820 21296 . - . ID=gene-AD39_RS10870;Name=AD39_RS10870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10870;old_locus_tag=AD39_2753 NZ_JJLH01000036.1 Protein Homology CDS 20820 21296 . - 0 ID=cds-WP_000229392.1;Parent=gene-AD39_RS10870;Dbxref=GenBank:WP_000229392.1;Name=WP_000229392.1;Ontology_term=GO:0005975,GO:0003796,GO:0004553;gbkey=CDS;go_function=lysozyme activity|0003796||IEA,hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309649.1;locus_tag=AD39_RS10870;product=glycoside hydrolase family 24 protein;protein_id=WP_000229392.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 21280 21603 . - . ID=gene-AD39_RS10865;Name=AD39_RS10865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10865;old_locus_tag=AD39_2754 NZ_JJLH01000036.1 Protein Homology CDS 21280 21603 . - 0 ID=cds-WP_000783734.1;Parent=gene-AD39_RS10865;Dbxref=GenBank:WP_000783734.1;Name=WP_000783734.1;Ontology_term=GO:0019835;gbkey=CDS;go_process=cytolysis|0019835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966862.1;locus_tag=AD39_RS10865;product=phage holin%2C lambda family;protein_id=WP_000783734.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 22387 23010 . - . ID=gene-AD39_RS10860;Name=AD39_RS10860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10860;old_locus_tag=AD39_2755 NZ_JJLH01000036.1 Protein Homology CDS 22387 23010 . - 0 ID=cds-WP_001235461.1;Parent=gene-AD39_RS10860;Dbxref=GenBank:WP_001235461.1;Name=WP_001235461.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311528.1;locus_tag=AD39_RS10860;product=antitermination protein;protein_id=WP_001235461.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 23007 23672 . - . ID=gene-AD39_RS10855;Name=AD39_RS10855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10855;old_locus_tag=AD39_2756 NZ_JJLH01000036.1 Protein Homology CDS 23007 23672 . - 0 ID=cds-WP_032283433.1;Parent=gene-AD39_RS10855;Dbxref=GenBank:WP_032283433.1;Name=WP_032283433.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308840.1;locus_tag=AD39_RS10855;product=serine/threonine protein phosphatase;protein_id=WP_032283433.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 23650 23856 . - . ID=gene-AD39_RS10850;Name=AD39_RS10850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10850;old_locus_tag=AD39_2757 NZ_JJLH01000036.1 Protein Homology CDS 23650 23856 . - 0 ID=cds-WP_000144614.1;Parent=gene-AD39_RS10850;Dbxref=GenBank:WP_000144614.1;Name=WP_000144614.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001601990.1;locus_tag=AD39_RS10850;product=phage NinH family protein;protein_id=WP_000144614.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 23853 24464 . - . ID=gene-AD39_RS10845;Name=AD39_RS10845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10845;old_locus_tag=AD39_2758 NZ_JJLH01000036.1 Protein Homology CDS 23853 24464 . - 0 ID=cds-WP_032287589.1;Parent=gene-AD39_RS10845;Dbxref=GenBank:WP_032287589.1;Name=WP_032287589.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309228.1;locus_tag=AD39_RS10845;product=recombination protein NinG;protein_id=WP_032287589.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 24457 24633 . - . ID=gene-AD39_RS0124810;Name=AD39_RS0124810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124810 NZ_JJLH01000036.1 Protein Homology CDS 24457 24633 . - 0 ID=cds-WP_032283434.1;Parent=gene-AD39_RS0124810;Dbxref=GenBank:WP_032283434.1;Name=WP_032283434.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000950944.1;locus_tag=AD39_RS0124810;product=protein NinF;protein_id=WP_032283434.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 24626 25009 . - . ID=gene-AD39_RS10840;Name=AD39_RS10840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10840;old_locus_tag=AD39_2759 NZ_JJLH01000036.1 Protein Homology CDS 24626 25009 . - 0 ID=cds-WP_032283435.1;Parent=gene-AD39_RS10840;Dbxref=GenBank:WP_032283435.1;Name=WP_032283435.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000386656.1;locus_tag=AD39_RS10840;product=phage protein NinX family protein;protein_id=WP_032283435.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 25012 25188 . - . ID=gene-AD39_RS0124815;Name=AD39_RS0124815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124815 NZ_JJLH01000036.1 Protein Homology CDS 25012 25188 . - 0 ID=cds-WP_001254238.1;Parent=gene-AD39_RS0124815;Dbxref=GenBank:WP_001254238.1;Name=WP_001254238.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311007.1;locus_tag=AD39_RS0124815;product=NinE family protein;protein_id=WP_001254238.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 25185 25712 . - . ID=gene-AD39_RS10835;Name=AD39_RS10835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10835;old_locus_tag=AD39_2760 NZ_JJLH01000036.1 Protein Homology CDS 25185 25712 . - 0 ID=cds-WP_032283455.1;Parent=gene-AD39_RS10835;Dbxref=GenBank:WP_032283455.1;Name=WP_032283455.1;Ontology_term=GO:0009307,GO:0003677,GO:0009007;gbkey=CDS;go_function=DNA binding|0003677||IEA,site-specific DNA-methyltransferase (adenine-specific) activity|0009007||IEA;go_process=DNA restriction-modification system|0009307||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309223.1;locus_tag=AD39_RS10835;product=phage N-6-adenine-methyltransferase;protein_id=WP_032283455.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 25709 26149 . - . ID=gene-AD39_RS10830;Name=AD39_RS10830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10830;old_locus_tag=AD39_2761 NZ_JJLH01000036.1 Protein Homology CDS 25709 26149 . - 0 ID=cds-WP_000736913.1;Parent=gene-AD39_RS10830;Dbxref=GenBank:WP_000736913.1;Name=WP_000736913.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001513013.1;locus_tag=AD39_RS10830;product=recombination protein NinB;protein_id=WP_000736913.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 26226 27662 . - . ID=gene-AD39_RS10825;Name=AD39_RS10825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10825;old_locus_tag=AD39_2762 NZ_JJLH01000036.1 Protein Homology CDS 26226 27662 . - 0 ID=cds-WP_001549089.1;Parent=gene-AD39_RS10825;Dbxref=GenBank:WP_001549089.1;Name=WP_001549089.1;Ontology_term=GO:0006260,GO:0003678,GO:0005524;gbkey=CDS;go_function=DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309217.2;locus_tag=AD39_RS10825;product=DnaB-like helicase C-terminal domain-containing protein;protein_id=WP_001549089.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 27652 28542 . - . ID=gene-AD39_RS10820;Name=AD39_RS10820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10820;old_locus_tag=AD39_2763 NZ_JJLH01000036.1 Protein Homology CDS 27652 28542 . - 0 ID=cds-WP_032283436.1;Parent=gene-AD39_RS10820;Dbxref=GenBank:WP_032283436.1;Name=WP_032283436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015973882.1;locus_tag=AD39_RS10820;product=hypothetical protein;protein_id=WP_032283436.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 28529 28690 . - . ID=gene-AD39_RS29470;Name=AD39_RS29470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29470 NZ_JJLH01000036.1 Protein Homology CDS 28529 28690 . - 0 ID=cds-WP_167850762.1;Parent=gene-AD39_RS29470;Dbxref=GenBank:WP_167850762.1;Name=WP_167850762.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000166968.1;locus_tag=AD39_RS29470;product=hypothetical protein;protein_id=WP_167850762.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 28725 29003 . - . ID=gene-AD39_RS10815;Name=AD39_RS10815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10815;old_locus_tag=AD39_2764 NZ_JJLH01000036.1 Protein Homology CDS 28725 29003 . - 0 ID=cds-WP_001177653.1;Parent=gene-AD39_RS10815;Dbxref=GenBank:WP_001177653.1;Name=WP_001177653.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001177654.1;locus_tag=AD39_RS10815;product=lambda phage CII family protein;protein_id=WP_001177653.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 29112 29306 . - . ID=gene-AD39_RS10810;Name=AD39_RS10810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10810;old_locus_tag=AD39_2765 NZ_JJLH01000036.1 Protein Homology CDS 29112 29306 . - 0 ID=cds-WP_000620665.1;Parent=gene-AD39_RS10810;Dbxref=GenBank:WP_000620665.1;Name=WP_000620665.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000620665.1;locus_tag=AD39_RS10810;product=Cro/CI family transcriptional regulator;protein_id=WP_000620665.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 29413 30129 . + . ID=gene-AD39_RS10805;Name=AD39_RS10805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10805;old_locus_tag=AD39_2766 NZ_JJLH01000036.1 Protein Homology CDS 29413 30129 . + 0 ID=cds-WP_000428318.1;Parent=gene-AD39_RS10805;Dbxref=GenBank:WP_000428318.1;Name=WP_000428318.1;Ontology_term=GO:0045892,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016063676.1;locus_tag=AD39_RS10805;product=LexA family protein;protein_id=WP_000428318.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 30148 30516 . + . ID=gene-AD39_RS0124820;Name=AD39_RS0124820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124820 NZ_JJLH01000036.1 Protein Homology CDS 30148 30516 . + 0 ID=cds-WP_032283438.1;Parent=gene-AD39_RS0124820;Dbxref=GenBank:WP_032283438.1;Name=WP_032283438.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000233126.1;locus_tag=AD39_RS0124820;product=hypothetical protein;protein_id=WP_032283438.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 30885 31184 . + . ID=gene-AD39_RS10800;Name=AD39_RS10800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10800;old_locus_tag=AD39_2768 NZ_JJLH01000036.1 Protein Homology CDS 30885 31184 . + 0 ID=cds-WP_000219338.1;Parent=gene-AD39_RS10800;Dbxref=GenBank:WP_000219338.1;Name=WP_000219338.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000219338.1;locus_tag=AD39_RS10800;product=hypothetical protein;protein_id=WP_000219338.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 31385 31519 . + . ID=gene-AD39_RS29975;Name=AD39_RS29975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29975 NZ_JJLH01000036.1 GeneMarkS-2+ CDS 31385 31519 . + 0 ID=cds-WP_256025684.1;Parent=gene-AD39_RS29975;Dbxref=GenBank:WP_256025684.1;Name=WP_256025684.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS29975;product=hypothetical protein;protein_id=WP_256025684.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 31519 31707 . + . ID=gene-AD39_RS27365;Name=AD39_RS27365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS27365 NZ_JJLH01000036.1 Protein Homology CDS 31519 31707 . + 0 ID=cds-WP_000865175.1;Parent=gene-AD39_RS27365;Dbxref=GenBank:WP_000865175.1;Name=WP_000865175.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000865171.1;locus_tag=AD39_RS27365;product=hypothetical protein;protein_id=WP_000865175.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 31893 32063 . + . ID=gene-AD39_RS29475;Name=AD39_RS29475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29475;old_locus_tag=AD39_2769 NZ_JJLH01000036.1 Protein Homology CDS 31893 32063 . + 0 ID=cds-WP_001183771.1;Parent=gene-AD39_RS29475;Dbxref=GenBank:WP_001183771.1;Name=WP_001183771.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001183768.1;locus_tag=AD39_RS29475;product=hypothetical protein;protein_id=WP_001183771.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 32148 32456 . + . ID=gene-AD39_RS10795;Name=AD39_RS10795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10795;old_locus_tag=AD39_2771 NZ_JJLH01000036.1 Protein Homology CDS 32148 32456 . + 0 ID=cds-WP_000604110.1;Parent=gene-AD39_RS10795;Dbxref=GenBank:WP_000604110.1;Name=WP_000604110.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016239858.1;locus_tag=AD39_RS10795;product=hypothetical protein;protein_id=WP_000604110.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 32453 33355 . + . ID=gene-AD39_RS10790;Name=AD39_RS10790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10790;old_locus_tag=AD39_2772 NZ_JJLH01000036.1 Protein Homology CDS 32453 33355 . + 0 ID=cds-WP_032283440.1;Parent=gene-AD39_RS10790;Dbxref=GenBank:WP_032283440.1;Name=WP_032283440.1;Ontology_term=GO:0006259,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA metabolic process|0006259||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012967689.1;locus_tag=AD39_RS10790;product=recombinase RecT;protein_id=WP_032283440.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 33348 33830 . + . ID=gene-AD39_RS10785;Name=AD39_RS10785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10785;old_locus_tag=AD39_2773 NZ_JJLH01000036.1 Protein Homology CDS 33348 33830 . + 0 ID=cds-WP_032283442.1;Parent=gene-AD39_RS10785;Dbxref=GenBank:WP_032283442.1;Name=WP_032283442.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000041330.1;locus_tag=AD39_RS10785;product=siphovirus Gp157 family protein;protein_id=WP_032283442.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 33842 34156 . + . ID=gene-AD39_RS10780;Name=AD39_RS10780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10780;old_locus_tag=AD39_2774 NZ_JJLH01000036.1 Protein Homology CDS 33842 34156 . + 0 ID=cds-WP_000753555.1;Parent=gene-AD39_RS10780;Dbxref=GenBank:WP_000753555.1;Name=WP_000753555.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000753557.1;locus_tag=AD39_RS10780;product=hypothetical protein;protein_id=WP_000753555.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 34173 34337 . + . ID=gene-AD39_RS0124840;Name=AD39_RS0124840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124840 NZ_JJLH01000036.1 Protein Homology CDS 34173 34337 . + 0 ID=cds-WP_001214456.1;Parent=gene-AD39_RS0124840;Dbxref=GenBank:WP_001214456.1;Name=WP_001214456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015980168.1;locus_tag=AD39_RS0124840;product=DUF2737 family protein;protein_id=WP_001214456.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 34334 34765 . + . ID=gene-AD39_RS10775;Name=AD39_RS10775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10775;old_locus_tag=AD39_2775 NZ_JJLH01000036.1 Protein Homology CDS 34334 34765 . + 0 ID=cds-WP_032283443.1;Parent=gene-AD39_RS10775;Dbxref=GenBank:WP_032283443.1;Name=WP_032283443.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000812189.1;locus_tag=AD39_RS10775;product=hypothetical protein;protein_id=WP_032283443.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 34762 35406 . + . ID=gene-AD39_RS10770;Name=AD39_RS10770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10770;old_locus_tag=AD39_2776 NZ_JJLH01000036.1 Protein Homology CDS 34762 35406 . + 0 ID=cds-WP_032283444.1;Parent=gene-AD39_RS10770;Dbxref=GenBank:WP_032283444.1;Name=WP_032283444.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009450597.1;locus_tag=AD39_RS10770;product=hypothetical protein;protein_id=WP_032283444.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 35403 35936 . + . ID=gene-AD39_RS10765;Name=AD39_RS10765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10765;old_locus_tag=AD39_2777 NZ_JJLH01000036.1 Protein Homology CDS 35403 35936 . + 0 ID=cds-WP_032283446.1;Parent=gene-AD39_RS10765;Dbxref=GenBank:WP_032283446.1;Name=WP_032283446.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001683864.1;locus_tag=AD39_RS10765;product=DUF551 domain-containing protein;protein_id=WP_032283446.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 36007 36807 . + . ID=gene-AD39_RS10760;Name=AD39_RS10760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10760;old_locus_tag=AD39_2778 NZ_JJLH01000036.1 Protein Homology CDS 36007 36807 . + 0 ID=cds-WP_001515401.1;Parent=gene-AD39_RS10760;Dbxref=GenBank:WP_001515401.1;Name=WP_001515401.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000152199.1;locus_tag=AD39_RS10760;product=hypothetical protein;protein_id=WP_001515401.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 36865 37032 . + . ID=gene-AD39_RS0124845;Name=AD39_RS0124845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124845 NZ_JJLH01000036.1 Protein Homology CDS 36865 37032 . + 0 ID=cds-WP_001518157.1;Parent=gene-AD39_RS0124845;Dbxref=GenBank:WP_001518157.1;Name=WP_001518157.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308829.1;locus_tag=AD39_RS0124845;product=hypothetical protein;protein_id=WP_001518157.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 37090 37290 . + . ID=gene-AD39_RS10755;Name=torI;gbkey=Gene;gene=torI;gene_biotype=protein_coding;locus_tag=AD39_RS10755;old_locus_tag=AD39_2779 NZ_JJLH01000036.1 Protein Homology CDS 37090 37290 . + 0 ID=cds-WP_001163428.1;Parent=gene-AD39_RS10755;Dbxref=GenBank:WP_001163428.1;Name=WP_001163428.1;gbkey=CDS;gene=torI;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588463.1;locus_tag=AD39_RS10755;product=response regulator inhibitor TorI;protein_id=WP_001163428.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 37820 39067 . - . ID=gene-AD39_RS10750;Name=AD39_RS10750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10750;old_locus_tag=AD39_2780 NZ_JJLH01000036.1 Protein Homology CDS 37820 39067 . - 0 ID=cds-WP_001197023.1;Parent=gene-AD39_RS10750;Dbxref=GenBank:WP_001197023.1;Name=WP_001197023.1;Ontology_term=GO:0008643,GO:0005351,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=carbohydrate:proton symporter activity|0005351||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311268.1;locus_tag=AD39_RS10750;product=oligosaccharide MFS transporter;protein_id=WP_001197023.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 39139 40053 . - . ID=gene-AD39_RS10745;Name=AD39_RS10745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10745;old_locus_tag=AD39_2781 NZ_JJLH01000036.1 Protein Homology CDS 39139 40053 . - 0 ID=cds-WP_001274887.1;Parent=gene-AD39_RS10745;Dbxref=GenBank:WP_001274887.1;Name=WP_001274887.1;Ontology_term=GO:0016301;gbkey=CDS;go_function=kinase activity|0016301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311269.1;locus_tag=AD39_RS10745;product=aminoimidazole riboside kinase;protein_id=WP_001274887.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 40269 41702 . + . ID=gene-AD39_RS10740;Name=cscA;gbkey=Gene;gene=cscA;gene_biotype=protein_coding;locus_tag=AD39_RS10740;old_locus_tag=AD39_2782 NZ_JJLH01000036.1 Protein Homology CDS 40269 41702 . + 0 ID=cds-WP_000194515.1;Parent=gene-AD39_RS10740;Dbxref=GenBank:WP_000194515.1;Name=WP_000194515.1;gbkey=CDS;gene=cscA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708234.2;locus_tag=AD39_RS10740;product=sucrose-6-phosphate hydrolase;protein_id=WP_000194515.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 41710 42705 . - . ID=gene-AD39_RS10735;Name=AD39_RS10735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10735;old_locus_tag=AD39_2783 NZ_JJLH01000036.1 Protein Homology CDS 41710 42705 . - 0 ID=cds-WP_001315771.1;Parent=gene-AD39_RS10735;Dbxref=GenBank:WP_001315771.1;Name=WP_001315771.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005088955.1;locus_tag=AD39_RS10735;product=LacI family DNA-binding transcriptional regulator;protein_id=WP_001315771.1;transl_table=11 NZ_JJLH01000036.1 RefSeq pseudogene 42936 43154 . + . ID=gene-AD39_RS10730;Name=AD39_RS10730;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS10730;old_locus_tag=AD39_2784;partial=true;pseudo=true;start_range=.,42936 NZ_JJLH01000036.1 Protein Homology CDS 42936 43154 . + 0 ID=cds-AD39_RS10730;Parent=gene-AD39_RS10730;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416866.1;locus_tag=AD39_RS10730;partial=true;product=D-serine transporter DsdX;pseudo=true;start_range=.,42936;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 43172 44500 . + . ID=gene-AD39_RS10725;Name=dsdA;gbkey=Gene;gene=dsdA;gene_biotype=protein_coding;locus_tag=AD39_RS10725;old_locus_tag=AD39_2785 NZ_JJLH01000036.1 Protein Homology CDS 43172 44500 . + 0 ID=cds-WP_000426426.1;Parent=gene-AD39_RS10725;Dbxref=GenBank:WP_000426426.1;Name=WP_000426426.1;Ontology_term=GO:0046416,GO:0008721,GO:0030170;gbkey=CDS;gene=dsdA;go_function=D-serine ammonia-lyase activity|0008721||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=D-amino acid metabolic process|0046416||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416867.1;locus_tag=AD39_RS10725;product=D-serine ammonia-lyase;protein_id=WP_000426426.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 44608 46146 . - . ID=gene-AD39_RS10720;Name=emrY;gbkey=Gene;gene=emrY;gene_biotype=protein_coding;locus_tag=AD39_RS10720;old_locus_tag=AD39_2786 NZ_JJLH01000036.1 Protein Homology CDS 44608 46146 . - 0 ID=cds-WP_001018713.1;Parent=gene-AD39_RS10720;Dbxref=GenBank:WP_001018713.1;Name=WP_001018713.1;gbkey=CDS;gene=emrY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416868.1;locus_tag=AD39_RS10720;product=multidrug efflux MFS transporter permease subunit EmrY;protein_id=WP_001018713.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 46146 47309 . - . ID=gene-AD39_RS10715;Name=emrK;gbkey=Gene;gene=emrK;gene_biotype=protein_coding;locus_tag=AD39_RS10715;old_locus_tag=AD39_2787 NZ_JJLH01000036.1 Protein Homology CDS 46146 47309 . - 0 ID=cds-WP_000435174.1;Parent=gene-AD39_RS10715;Dbxref=GenBank:WP_000435174.1;Name=WP_000435174.1;gbkey=CDS;gene=emrK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416869.1;locus_tag=AD39_RS10715;product=multidrug efflux MFS transporter periplasmic adaptor subunit EmrK;protein_id=WP_000435174.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 47725 48339 . + . ID=gene-AD39_RS10710;Name=evgA;gbkey=Gene;gene=evgA;gene_biotype=protein_coding;locus_tag=AD39_RS10710;old_locus_tag=AD39_2788 NZ_JJLH01000036.1 Protein Homology CDS 47725 48339 . + 0 ID=cds-WP_000991370.1;Parent=gene-AD39_RS10710;Dbxref=GenBank:WP_000991370.1;Name=WP_000991370.1;gbkey=CDS;gene=evgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311275.1;locus_tag=AD39_RS10710;product=acid-sensing system DNA-binding response regulator EvgA;protein_id=WP_000991370.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 48344 51937 . + . ID=gene-AD39_RS10705;Name=evgS;gbkey=Gene;gene=evgS;gene_biotype=protein_coding;locus_tag=AD39_RS10705;old_locus_tag=AD39_2789 NZ_JJLH01000036.1 Protein Homology CDS 48344 51937 . + 0 ID=cds-WP_071998423.1;Parent=gene-AD39_RS10705;Dbxref=GenBank:WP_071998423.1;Name=WP_071998423.1;Ontology_term=GO:0010447,GO:0004673;gbkey=CDS;gene=evgS;go_function=protein histidine kinase activity|0004673||IEA;go_process=response to acidic pH|0010447||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708241.1;locus_tag=AD39_RS10705;product=acid-sensing system histidine kinase EvgS;protein_id=WP_071998423.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 51993 53138 . - . ID=gene-AD39_RS10700;Name=yfdE;gbkey=Gene;gene=yfdE;gene_biotype=protein_coding;locus_tag=AD39_RS10700;old_locus_tag=AD39_2790 NZ_JJLH01000036.1 Protein Homology CDS 51993 53138 . - 0 ID=cds-WP_001296867.1;Parent=gene-AD39_RS10700;Dbxref=GenBank:WP_001296867.1;Name=WP_001296867.1;gbkey=CDS;gene=yfdE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416872.4;locus_tag=AD39_RS10700;product=CoA:oxalate CoA-transferase;protein_id=WP_001296867.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 53212 54156 . - . ID=gene-AD39_RS10695;Name=yfdV;gbkey=Gene;gene=yfdV;gene_biotype=protein_coding;locus_tag=AD39_RS10695;old_locus_tag=AD39_2791 NZ_JJLH01000036.1 Protein Homology CDS 53212 54156 . - 0 ID=cds-WP_000955028.1;Parent=gene-AD39_RS10695;Dbxref=GenBank:WP_000955028.1;Name=WP_000955028.1;gbkey=CDS;gene=yfdV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311279.1;locus_tag=AD39_RS10695;product=transporter YfdV;protein_id=WP_000955028.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 54226 55920 . - . ID=gene-AD39_RS10690;Name=oxc;gbkey=Gene;gene=oxc;gene_biotype=protein_coding;locus_tag=AD39_RS10690;old_locus_tag=AD39_2792 NZ_JJLH01000036.1 Protein Homology CDS 54226 55920 . - 0 ID=cds-WP_001283499.1;Parent=gene-AD39_RS10690;Dbxref=GenBank:WP_001283499.1;Name=WP_001283499.1;Ontology_term=GO:0033611,GO:0000287,GO:0008949,GO:0030976;gbkey=CDS;gene=oxc;go_function=magnesium ion binding|0000287||IEA,oxalyl-CoA decarboxylase activity|0008949||IEA,thiamine pyrophosphate binding|0030976||IEA;go_process=oxalate catabolic process|0033611||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311280.1;locus_tag=AD39_RS10690;product=oxalyl-CoA decarboxylase;protein_id=WP_001283499.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 55974 57224 . - . ID=gene-AD39_RS10685;Name=frc;gbkey=Gene;gene=frc;gene_biotype=protein_coding;locus_tag=AD39_RS10685;old_locus_tag=AD39_2793 NZ_JJLH01000036.1 Protein Homology CDS 55974 57224 . - 0 ID=cds-WP_000106759.1;Parent=gene-AD39_RS10685;Dbxref=GenBank:WP_000106759.1;Name=WP_000106759.1;Ontology_term=GO:0033611,GO:0033608;gbkey=CDS;gene=frc;go_function=formyl-CoA transferase activity|0033608||IEA;go_process=oxalate catabolic process|0033611||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416875.1;locus_tag=AD39_RS10685;product=formyl-CoA transferase;protein_id=WP_000106759.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 57737 58369 . - . ID=gene-AD39_RS10680;Name=yfdX;gbkey=Gene;gene=yfdX;gene_biotype=protein_coding;locus_tag=AD39_RS10680;old_locus_tag=AD39_2794 NZ_JJLH01000036.1 Protein Homology CDS 57737 58369 . - 0 ID=cds-WP_000825604.1;Parent=gene-AD39_RS10680;Dbxref=GenBank:WP_000825604.1;Name=WP_000825604.1;gbkey=CDS;gene=yfdX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708246.1;locus_tag=AD39_RS10680;product=YfdX family protein;protein_id=WP_000825604.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 58665 58940 . + . ID=gene-AD39_RS0124855;Name=ypdI;gbkey=Gene;gene=ypdI;gene_biotype=protein_coding;locus_tag=AD39_RS0124855 NZ_JJLH01000036.1 Protein Homology CDS 58665 58940 . + 0 ID=cds-WP_000867627.1;Parent=gene-AD39_RS0124855;Dbxref=GenBank:WP_000867627.1;Name=WP_000867627.1;gbkey=CDS;gene=ypdI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416877.1;locus_tag=AD39_RS0124855;product=colanic acid biosynthesis lipoprotein YpdI;protein_id=WP_000867627.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 58966 59259 . - . ID=gene-AD39_RS10675;Name=AD39_RS10675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10675;old_locus_tag=AD39_2795 NZ_JJLH01000036.1 Protein Homology CDS 58966 59259 . - 0 ID=cds-WP_032287590.1;Parent=gene-AD39_RS10675;Dbxref=GenBank:WP_032287590.1;Name=WP_032287590.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708247.1;locus_tag=AD39_RS10675;product=YfdY family protein;protein_id=WP_032287590.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 59612 60532 . + . ID=gene-AD39_RS10670;Name=lpxP;gbkey=Gene;gene=lpxP;gene_biotype=protein_coding;locus_tag=AD39_RS10670;old_locus_tag=AD39_2796 NZ_JJLH01000036.1 Protein Homology CDS 59612 60532 . + 0 ID=cds-WP_000484404.1;Parent=gene-AD39_RS10670;Dbxref=GenBank:WP_000484404.1;Name=WP_000484404.1;Ontology_term=GO:0009409,GO:0036104,GO:0008951,GO:0016020;gbkey=CDS;gene=lpxP;go_component=membrane|0016020||IEA;go_function=palmitoleoyl [acyl-carrier-protein]-dependent acyltransferase activity|0008951||IEA;go_process=response to cold|0009409||IEA,Kdo2-lipid A biosynthetic process|0036104||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311285.2;locus_tag=AD39_RS10670;product=kdo(2)-lipid IV(A) palmitoleoyltransferase;protein_id=WP_000484404.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 60888 60959 . + . ID=gene-AD39_RS28580;Name=ypdK;gbkey=Gene;gene=ypdK;gene_biotype=protein_coding;locus_tag=AD39_RS28580 NZ_JJLH01000036.1 Protein Homology CDS 60888 60959 . + 0 ID=cds-WP_010723117.1;Parent=gene-AD39_RS28580;Dbxref=GenBank:WP_010723117.1;Name=WP_010723117.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ypdK;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_077777854.1;locus_tag=AD39_RS28580;product=membrane protein YpdK;protein_id=WP_010723117.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 61024 62262 . - . ID=gene-AD39_RS10665;Name=alaC;gbkey=Gene;gene=alaC;gene_biotype=protein_coding;locus_tag=AD39_RS10665;old_locus_tag=AD39_2798 NZ_JJLH01000036.1 Protein Homology CDS 61024 62262 . - 0 ID=cds-WP_001543069.1;Parent=gene-AD39_RS10665;Dbxref=GenBank:WP_001543069.1;Name=WP_001543069.1;Ontology_term=GO:0009058,GO:0003824,GO:0030170;gbkey=CDS;gene=alaC;go_function=catalytic activity|0003824||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416880.1;locus_tag=AD39_RS10665;product=alanine transaminase;protein_id=WP_001543069.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 62639 64336 . + . ID=gene-AD39_RS10660;Name=ypdA;gbkey=Gene;gene=ypdA;gene_biotype=protein_coding;locus_tag=AD39_RS10660;old_locus_tag=AD39_2799 NZ_JJLH01000036.1 Protein Homology CDS 62639 64336 . + 0 ID=cds-WP_000544359.1;Parent=gene-AD39_RS10660;Dbxref=GenBank:WP_000544359.1;Name=WP_000544359.1;gbkey=CDS;gene=ypdA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311287.1;locus_tag=AD39_RS10660;product=two-component system sensor histidine kinase YpdA;protein_id=WP_000544359.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 64351 65085 . + . ID=gene-AD39_RS10655;Name=ypdB;gbkey=Gene;gene=ypdB;gene_biotype=protein_coding;locus_tag=AD39_RS10655;old_locus_tag=AD39_2800 NZ_JJLH01000036.1 Protein Homology CDS 64351 65085 . + 0 ID=cds-WP_001295458.1;Parent=gene-AD39_RS10655;Dbxref=GenBank:WP_001295458.1;Name=WP_001295458.1;gbkey=CDS;gene=ypdB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311288.1;locus_tag=AD39_RS10655;product=two-component system response regulator YpdB;protein_id=WP_001295458.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 65098 65955 . + . ID=gene-AD39_RS10650;Name=ypdC;gbkey=Gene;gene=ypdC;gene_biotype=protein_coding;locus_tag=AD39_RS10650;old_locus_tag=AD39_2801 NZ_JJLH01000036.1 Protein Homology CDS 65098 65955 . + 0 ID=cds-WP_000646844.1;Parent=gene-AD39_RS10650;Dbxref=GenBank:WP_000646844.1;Name=WP_000646844.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=ypdC;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311289.1;locus_tag=AD39_RS10650;product=AraC family transcriptional regulator;protein_id=WP_000646844.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 65958 68453 . - . ID=gene-AD39_RS10645;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=AD39_RS10645;old_locus_tag=AD39_2802 NZ_JJLH01000036.1 Protein Homology CDS 65958 68453 . - 0 ID=cds-WP_000955938.1;Parent=gene-AD39_RS10645;Dbxref=GenBank:WP_000955938.1;Name=WP_000955938.1;Ontology_term=GO:0009401,GO:0008965;gbkey=CDS;gene=ptsP;go_function=phosphoenolpyruvate-protein phosphotransferase activity|0008965||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416884.1;locus_tag=AD39_RS10645;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=WP_000955938.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 68478 69515 . - . ID=gene-AD39_RS10640;Name=ypdE;gbkey=Gene;gene=ypdE;gene_biotype=protein_coding;locus_tag=AD39_RS10640;old_locus_tag=AD39_2803 NZ_JJLH01000036.1 Protein Homology CDS 68478 69515 . - 0 ID=cds-WP_000366033.1;Parent=gene-AD39_RS10640;Dbxref=GenBank:WP_000366033.1;Name=WP_000366033.1;gbkey=CDS;gene=ypdE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416885.1;locus_tag=AD39_RS10640;product=aminopeptidase;protein_id=WP_000366033.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 69515 70600 . - . ID=gene-AD39_RS10635;Name=ypdF;gbkey=Gene;gene=ypdF;gene_biotype=protein_coding;locus_tag=AD39_RS10635;old_locus_tag=AD39_2804 NZ_JJLH01000036.1 Protein Homology CDS 69515 70600 . - 0 ID=cds-WP_000173242.1;Parent=gene-AD39_RS10635;Dbxref=GenBank:WP_000173242.1;Name=WP_000173242.1;Ontology_term=GO:0016787;gbkey=CDS;gene=ypdF;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416886.1;locus_tag=AD39_RS10635;product=aminopeptidase;protein_id=WP_000173242.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 70615 71862 . - . ID=gene-AD39_RS10630;Name=fryC;gbkey=Gene;gene=fryC;gene_biotype=protein_coding;locus_tag=AD39_RS10630;old_locus_tag=AD39_2805 NZ_JJLH01000036.1 Protein Homology CDS 70615 71862 . - 0 ID=cds-WP_032255042.1;Parent=gene-AD39_RS10630;Dbxref=GenBank:WP_032255042.1;Name=WP_032255042.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;gene=fryC;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311293.1;locus_tag=AD39_RS10630;product=PTS fructose transporter subunit IIC;protein_id=WP_032255042.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 71884 72210 . - . ID=gene-AD39_RS10625;Name=fryB;gbkey=Gene;gene=fryB;gene_biotype=protein_coding;locus_tag=AD39_RS10625;old_locus_tag=AD39_2806 NZ_JJLH01000036.1 Protein Homology CDS 71884 72210 . - 0 ID=cds-WP_001296874.1;Parent=gene-AD39_RS10625;Dbxref=GenBank:WP_001296874.1;Name=WP_001296874.1;Ontology_term=GO:0009401,GO:0016310,GO:0016301,GO:0022877,GO:0090563,GO:0090582;gbkey=CDS;gene=fryB;go_function=kinase activity|0016301||IEA,protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA,protein-phosphocysteine-sugar phosphotransferase activity|0090563||IEA,protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity|0090582||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311294.1;locus_tag=AD39_RS10625;product=PTS fructose transporter subunit IIB;protein_id=WP_001296874.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 72429 73394 . - . ID=gene-AD39_RS10620;Name=glk;gbkey=Gene;gene=glk;gene_biotype=protein_coding;locus_tag=AD39_RS10620;old_locus_tag=AD39_2807 NZ_JJLH01000036.1 Protein Homology CDS 72429 73394 . - 0 ID=cds-WP_000170352.1;Parent=gene-AD39_RS10620;Dbxref=GenBank:WP_000170352.1;Name=WP_000170352.1;Ontology_term=GO:0006096,GO:0051156,GO:0004340,GO:0005524,GO:0005536;gbkey=CDS;gene=glk;go_function=glucokinase activity|0004340||IEA,ATP binding|0005524||IEA,D-glucose binding|0005536||IEA;go_process=glycolytic process|0006096||IEA,glucose 6-phosphate metabolic process|0051156||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311295.1;locus_tag=AD39_RS10620;product=glucokinase;protein_id=WP_000170352.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 73598 74854 . + . ID=gene-AD39_RS10615;Name=yfeO;gbkey=Gene;gene=yfeO;gene_biotype=protein_coding;locus_tag=AD39_RS10615;old_locus_tag=AD39_2808 NZ_JJLH01000036.1 Protein Homology CDS 73598 74854 . + 0 ID=cds-WP_032283449.1;Parent=gene-AD39_RS10615;Dbxref=GenBank:WP_032283449.1;Name=WP_032283449.1;Ontology_term=GO:0005247;gbkey=CDS;gene=yfeO;go_function=voltage-gated chloride channel activity|0005247||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311296.1;locus_tag=AD39_RS10615;product=ion channel protein;protein_id=WP_032283449.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 74969 75295 . + . ID=gene-AD39_RS10610;Name=ypeC;gbkey=Gene;gene=ypeC;gene_biotype=protein_coding;locus_tag=AD39_RS10610;old_locus_tag=AD39_2809 NZ_JJLH01000036.1 Protein Homology CDS 74969 75295 . + 0 ID=cds-WP_000490072.1;Parent=gene-AD39_RS10610;Dbxref=GenBank:WP_000490072.1;Name=WP_000490072.1;gbkey=CDS;gene=ypeC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311297.1;locus_tag=AD39_RS10610;product=DUF2502 domain-containing protein YpeC;protein_id=WP_000490072.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 75436 76674 . - . ID=gene-AD39_RS10605;Name=mntH;gbkey=Gene;gene=mntH;gene_biotype=protein_coding;locus_tag=AD39_RS10605;old_locus_tag=AD39_2810 NZ_JJLH01000036.1 Protein Homology CDS 75436 76674 . - 0 ID=cds-WP_024171970.1;Parent=gene-AD39_RS10605;Dbxref=GenBank:WP_024171970.1;Name=WP_024171970.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mntH;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311298.1;locus_tag=AD39_RS10605;product=Nramp family divalent metal transporter;protein_id=WP_024171970.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 76655 76744 . - . ID=gene-AD39_RS30215;Name=AD39_RS30215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30215 NZ_JJLH01000036.1 Protein Homology CDS 76655 76744 . - 0 ID=cds-WP_240811045.1;Parent=gene-AD39_RS30215;Dbxref=GenBank:WP_240811045.1;Name=WP_240811045.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF049535.1;locus_tag=AD39_RS30215;product=protein YpeD;protein_id=WP_240811045.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 77010 78212 . + . ID=gene-AD39_RS10600;Name=nupC;gbkey=Gene;gene=nupC;gene_biotype=protein_coding;locus_tag=AD39_RS10600;old_locus_tag=AD39_2811 NZ_JJLH01000036.1 Protein Homology CDS 77010 78212 . + 0 ID=cds-WP_000376337.1;Parent=gene-AD39_RS10600;Dbxref=GenBank:WP_000376337.1;Name=WP_000376337.1;gbkey=CDS;gene=nupC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416894.1;locus_tag=AD39_RS10600;product=nucleoside permease NupC;protein_id=WP_000376337.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 78262 80451 . - . ID=gene-AD39_RS10595;Name=pdeA;gbkey=Gene;gene=pdeA;gene_biotype=protein_coding;locus_tag=AD39_RS10595;old_locus_tag=AD39_2812 NZ_JJLH01000036.1 Protein Homology CDS 78262 80451 . - 0 ID=cds-WP_001498472.1;Parent=gene-AD39_RS10595;Dbxref=GenBank:WP_001498472.1;Name=WP_001498472.1;Ontology_term=GO:0007165,GO:0005525,GO:0046872,GO:0052621,GO:0071111;gbkey=CDS;gene=pdeA;go_function=GTP binding|0005525||IEA,metal ion binding|0046872||IEA,diguanylate cyclase activity|0052621||IEA,cyclic-guanylate-specific phosphodiesterase activity|0071111||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416896.4;locus_tag=AD39_RS10595;product=bifunctional diguanylate cyclase/phosphodiesterase;protein_id=WP_001498472.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 80660 80735 . - . ID=gene-AD39_RS10590;Name=AD39_RS10590;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10590;old_locus_tag=AD39_2813 NZ_JJLH01000036.1 tRNAscan-SE tRNA 80660 80735 . - . ID=rna-AD39_RS10590;Parent=gene-AD39_RS10590;anticodon=(pos:complement(80700..80702));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10590;product=tRNA-Ala NZ_JJLH01000036.1 tRNAscan-SE exon 80660 80735 . - . ID=exon-AD39_RS10590-1;Parent=rna-AD39_RS10590;anticodon=(pos:complement(80700..80702));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10590;product=tRNA-Ala NZ_JJLH01000036.1 RefSeq gene 80775 80850 . - . ID=gene-AD39_RS10585;Name=AD39_RS10585;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10585;old_locus_tag=AD39_2814 NZ_JJLH01000036.1 tRNAscan-SE tRNA 80775 80850 . - . ID=rna-AD39_RS10585;Parent=gene-AD39_RS10585;anticodon=(pos:complement(80815..80817));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10585;product=tRNA-Ala NZ_JJLH01000036.1 tRNAscan-SE exon 80775 80850 . - . ID=exon-AD39_RS10585-1;Parent=rna-AD39_RS10585;anticodon=(pos:complement(80815..80817));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10585;product=tRNA-Ala NZ_JJLH01000036.1 RefSeq gene 81071 81430 . + . ID=gene-AD39_RS10580;Name=yfeC;gbkey=Gene;gene=yfeC;gene_biotype=protein_coding;locus_tag=AD39_RS10580;old_locus_tag=AD39_2815 NZ_JJLH01000036.1 Protein Homology CDS 81071 81430 . + 0 ID=cds-WP_000472021.1;Parent=gene-AD39_RS10580;Dbxref=GenBank:WP_000472021.1;Name=WP_000472021.1;gbkey=CDS;gene=yfeC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311301.3;locus_tag=AD39_RS10580;product=YfeC-like transcriptional regulator;protein_id=WP_000472021.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 81432 81824 . + . ID=gene-AD39_RS10575;Name=AD39_RS10575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10575;old_locus_tag=AD39_2816 NZ_JJLH01000036.1 Protein Homology CDS 81432 81824 . + 0 ID=cds-WP_000826503.1;Parent=gene-AD39_RS10575;Dbxref=GenBank:WP_000826503.1;Name=WP_000826503.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416898.3;locus_tag=AD39_RS10575;product=MerR family transcriptional regulator;protein_id=WP_000826503.1;transl_table=11 NZ_JJLH01000036.1 RefSeq gene 81876 82068 . - . ID=gene-AD39_RS10570;Name=AD39_RS10570;end_range=82068,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10570;old_locus_tag=AD39_2817;partial=true NZ_JJLH01000036.1 Protein Homology CDS 81876 82068 . - 1 ID=cds-WP_032181622.1;Parent=gene-AD39_RS10570;Dbxref=GenBank:WP_032181622.1;Name=WP_032181622.1;end_range=82068,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416899.1;locus_tag=AD39_RS10570;partial=true;product=hypothetical protein;protein_id=WP_032181622.1;transl_table=11 ##sequence-region NZ_JJLH01000037.1 1 7265 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000037.1 RefSeq region 1 7265 . + . ID=NZ_JJLH01000037.1:1..7265;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000037.1 RefSeq gene 1 275 . + . ID=gene-AD39_RS10565;Name=AD39_RS10565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10565;old_locus_tag=AD39_2818;partial=true;start_range=.,1 NZ_JJLH01000037.1 Protein Homology CDS 1 275 . + 2 ID=cds-WP_000308288.1;Parent=gene-AD39_RS10565;Dbxref=GenBank:WP_000308288.1;Name=WP_000308288.1;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612230.1;locus_tag=AD39_RS10565;partial=true;product=IS1 family transposase;protein_id=WP_000308288.1;start_range=.,1;transl_table=11 NZ_JJLH01000037.1 RefSeq gene 575 1741 . + . ID=gene-AD39_RS10560;Name=sopA;gbkey=Gene;gene=sopA;gene_biotype=protein_coding;locus_tag=AD39_RS10560;old_locus_tag=AD39_2819 NZ_JJLH01000037.1 Protein Homology CDS 575 1741 . + 0 ID=cds-WP_001238646.1;Parent=gene-AD39_RS10560;Dbxref=GenBank:WP_001238646.1;Name=WP_001238646.1;gbkey=CDS;gene=sopA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_052640.1;locus_tag=AD39_RS10560;product=plasmid-partitioning protein SopA;protein_id=WP_001238646.1;transl_table=11 NZ_JJLH01000037.1 RefSeq gene 1741 2712 . + . ID=gene-AD39_RS10555;Name=AD39_RS10555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10555;old_locus_tag=AD39_2820 NZ_JJLH01000037.1 Protein Homology CDS 1741 2712 . + 0 ID=cds-WP_000817028.1;Parent=gene-AD39_RS10555;Dbxref=GenBank:WP_000817028.1;Name=WP_000817028.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000817027.1;locus_tag=AD39_RS10555;product=ParB/RepB/Spo0J family plasmid partition protein;protein_id=WP_000817028.1;transl_table=11 NZ_JJLH01000037.1 RefSeq pseudogene 3263 3432 . + . ID=gene-AD39_RS29765;Name=AD39_RS29765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29765;partial=true;pseudo=true;start_range=.,3263 NZ_JJLH01000037.1 Protein Homology CDS 3263 3432 . + 0 ID=cds-AD39_RS29765;Parent=gene-AD39_RS29765;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_052647.1;locus_tag=AD39_RS29765;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3263;transl_table=11 NZ_JJLH01000037.1 RefSeq pseudogene 3509 4621 . + . ID=gene-AD39_RS0124870;Name=AD39_RS0124870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0124870;pseudo=true NZ_JJLH01000037.1 Protein Homology CDS 3509 4621 . + 0 ID=cds-AD39_RS0124870;Parent=gene-AD39_RS0124870;Note=internal stop;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414557.1;locus_tag=AD39_RS0124870;product=IS4-like element IS421 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000037.1 RefSeq gene 5194 5769 . + . ID=gene-AD39_RS0124880;Name=AD39_RS0124880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124880 NZ_JJLH01000037.1 Protein Homology CDS 5194 5769 . + 0 ID=cds-WP_000343071.1;Parent=gene-AD39_RS0124880;Dbxref=GenBank:WP_000343071.1;Name=WP_000343071.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343071.1;locus_tag=AD39_RS0124880;product=mobilome CxxCx(11)CxxC protein;protein_id=WP_000343071.1;transl_table=11 NZ_JJLH01000037.1 RefSeq gene 5782 5994 . + . ID=gene-AD39_RS0124885;Name=AD39_RS0124885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124885 NZ_JJLH01000037.1 Protein Homology CDS 5782 5994 . + 0 ID=cds-WP_000092896.1;Parent=gene-AD39_RS0124885;Dbxref=GenBank:WP_000092896.1;Name=WP_000092896.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000092896.1;locus_tag=AD39_RS0124885;product=hypothetical protein;protein_id=WP_000092896.1;transl_table=11 NZ_JJLH01000037.1 RefSeq gene 6255 7223 . - . ID=gene-AD39_RS0124890;Name=AD39_RS0124890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0124890 NZ_JJLH01000037.1 Protein Homology CDS 6255 7223 . - 0 ID=cds-WP_032283463.1;Parent=gene-AD39_RS0124890;Dbxref=GenBank:WP_032283463.1;Name=WP_032283463.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000082154.1;locus_tag=AD39_RS0124890;product=IS110-like element ISEc32 family transposase;protein_id=WP_032283463.1;transl_table=11 ##sequence-region NZ_JJLH01000038.1 1 663 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000038.1 RefSeq region 1 663 . + . ID=NZ_JJLH01000038.1:1..663;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000038.1 RefSeq gene 173 248 . + . ID=gene-AD39_RS10550;Name=AD39_RS10550;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10550;old_locus_tag=AD39_2825 NZ_JJLH01000038.1 tRNAscan-SE tRNA 173 248 . + . ID=rna-AD39_RS10550;Parent=gene-AD39_RS10550;anticodon=(pos:206..208);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10550;product=tRNA-Val NZ_JJLH01000038.1 tRNAscan-SE exon 173 248 . + . ID=exon-AD39_RS10550-1;Parent=rna-AD39_RS10550;anticodon=(pos:206..208);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10550;product=tRNA-Val NZ_JJLH01000038.1 RefSeq gene 295 370 . + . ID=gene-AD39_RS10545;Name=AD39_RS10545;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10545;old_locus_tag=AD39_2826 NZ_JJLH01000038.1 tRNAscan-SE tRNA 295 370 . + . ID=rna-AD39_RS10545;Parent=gene-AD39_RS10545;anticodon=(pos:328..330);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10545;product=tRNA-Val NZ_JJLH01000038.1 tRNAscan-SE exon 295 370 . + . ID=exon-AD39_RS10545-1;Parent=rna-AD39_RS10545;anticodon=(pos:328..330);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10545;product=tRNA-Val NZ_JJLH01000038.1 RefSeq gene 374 449 . + . ID=gene-AD39_RS10540;Name=AD39_RS10540;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10540;old_locus_tag=AD39_2827 NZ_JJLH01000038.1 tRNAscan-SE tRNA 374 449 . + . ID=rna-AD39_RS10540;Parent=gene-AD39_RS10540;anticodon=(pos:407..409);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10540;product=tRNA-Lys NZ_JJLH01000038.1 tRNAscan-SE exon 374 449 . + . ID=exon-AD39_RS10540-1;Parent=rna-AD39_RS10540;anticodon=(pos:407..409);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10540;product=tRNA-Lys ##sequence-region NZ_JJLH01000039.1 1 27570 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000039.1 RefSeq region 1 27570 . + . ID=NZ_JJLH01000039.1:1..27570;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000039.1 RefSeq gene 1 418 . - . ID=gene-AD39_RS10530;Name=AD39_RS10530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10530;old_locus_tag=AD39_2829;partial=true;start_range=.,1 NZ_JJLH01000039.1 Protein Homology CDS 1 418 . - 0 ID=cds-WP_032174934.1;Parent=gene-AD39_RS10530;Dbxref=GenBank:WP_032174934.1;Name=WP_032174934.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311300.1;locus_tag=AD39_RS10530;partial=true;product=MASE1 domain-containing protein;protein_id=WP_032174934.1;start_range=.,1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 627 702 . - . ID=gene-AD39_RS10525;Name=AD39_RS10525;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10525;old_locus_tag=AD39_2830 NZ_JJLH01000039.1 tRNAscan-SE tRNA 627 702 . - . ID=rna-AD39_RS10525;Parent=gene-AD39_RS10525;anticodon=(pos:complement(667..669));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10525;product=tRNA-Ala NZ_JJLH01000039.1 tRNAscan-SE exon 627 702 . - . ID=exon-AD39_RS10525-1;Parent=rna-AD39_RS10525;anticodon=(pos:complement(667..669));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10525;product=tRNA-Ala NZ_JJLH01000039.1 RefSeq gene 742 817 . - . ID=gene-AD39_RS10520;Name=AD39_RS10520;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10520;old_locus_tag=AD39_2831 NZ_JJLH01000039.1 tRNAscan-SE tRNA 742 817 . - . ID=rna-AD39_RS10520;Parent=gene-AD39_RS10520;anticodon=(pos:complement(782..784));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10520;product=tRNA-Ala NZ_JJLH01000039.1 tRNAscan-SE exon 742 817 . - . ID=exon-AD39_RS10520-1;Parent=rna-AD39_RS10520;anticodon=(pos:complement(782..784));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10520;product=tRNA-Ala NZ_JJLH01000039.1 RefSeq gene 857 932 . - . ID=gene-AD39_RS10515;Name=AD39_RS10515;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10515;old_locus_tag=AD39_2832 NZ_JJLH01000039.1 tRNAscan-SE tRNA 857 932 . - . ID=rna-AD39_RS10515;Parent=gene-AD39_RS10515;anticodon=(pos:complement(897..899));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10515;product=tRNA-Ala NZ_JJLH01000039.1 tRNAscan-SE exon 857 932 . - . ID=exon-AD39_RS10515-1;Parent=rna-AD39_RS10515;anticodon=(pos:complement(897..899));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10515;product=tRNA-Ala NZ_JJLH01000039.1 RefSeq gene 972 1047 . - . ID=gene-AD39_RS10510;Name=AD39_RS10510;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10510;old_locus_tag=AD39_2833 NZ_JJLH01000039.1 tRNAscan-SE tRNA 972 1047 . - . ID=rna-AD39_RS10510;Parent=gene-AD39_RS10510;anticodon=(pos:complement(1012..1014));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10510;product=tRNA-Ala NZ_JJLH01000039.1 tRNAscan-SE exon 972 1047 . - . ID=exon-AD39_RS10510-1;Parent=rna-AD39_RS10510;anticodon=(pos:complement(1012..1014));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10510;product=tRNA-Ala NZ_JJLH01000039.1 RefSeq gene 1268 1627 . + . ID=gene-AD39_RS10505;Name=AD39_RS10505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10505;old_locus_tag=AD39_2834 NZ_JJLH01000039.1 Protein Homology CDS 1268 1627 . + 0 ID=cds-WP_000472021.1-2;Parent=gene-AD39_RS10505;Dbxref=GenBank:WP_000472021.1;Name=WP_000472021.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311301.3;locus_tag=AD39_RS10505;product=YfeC-like transcriptional regulator;protein_id=WP_000472021.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 1629 2021 . + . ID=gene-AD39_RS10500;Name=AD39_RS10500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10500;old_locus_tag=AD39_2835 NZ_JJLH01000039.1 Protein Homology CDS 1629 2021 . + 0 ID=cds-WP_000826503.1-2;Parent=gene-AD39_RS10500;Dbxref=GenBank:WP_000826503.1;Name=WP_000826503.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416898.3;locus_tag=AD39_RS10500;product=MerR family transcriptional regulator;protein_id=WP_000826503.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 2073 3488 . - . ID=gene-AD39_RS10495;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=AD39_RS10495;old_locus_tag=AD39_2836 NZ_JJLH01000039.1 Protein Homology CDS 2073 3488 . - 0 ID=cds-WP_000695655.1;Parent=gene-AD39_RS10495;Dbxref=GenBank:WP_000695655.1;Name=WP_000695655.1;Ontology_term=GO:0006424,GO:0000166,GO:0004818,GO:0005524;gbkey=CDS;gene=gltX;go_function=nucleotide binding|0000166||IEA,glutamate-tRNA ligase activity|0004818||IEA,ATP binding|0005524||IEA;go_process=glutamyl-tRNA aminoacylation|0006424||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416899.1;locus_tag=AD39_RS10495;product=glutamate--tRNA ligase;protein_id=WP_000695655.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 3747 3822 . + . ID=gene-AD39_RS10490;Name=AD39_RS10490;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10490;old_locus_tag=AD39_2838 NZ_JJLH01000039.1 tRNAscan-SE tRNA 3747 3822 . + . ID=rna-AD39_RS10490;Parent=gene-AD39_RS10490;anticodon=(pos:3780..3782);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10490;product=tRNA-Val NZ_JJLH01000039.1 tRNAscan-SE exon 3747 3822 . + . ID=exon-AD39_RS10490-1;Parent=rna-AD39_RS10490;anticodon=(pos:3780..3782);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10490;product=tRNA-Val NZ_JJLH01000039.1 RefSeq gene 3867 3942 . + . ID=gene-AD39_RS10485;Name=AD39_RS10485;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10485;old_locus_tag=AD39_2839 NZ_JJLH01000039.1 tRNAscan-SE tRNA 3867 3942 . + . ID=rna-AD39_RS10485;Parent=gene-AD39_RS10485;anticodon=(pos:3900..3902);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10485;product=tRNA-Val NZ_JJLH01000039.1 tRNAscan-SE exon 3867 3942 . + . ID=exon-AD39_RS10485-1;Parent=rna-AD39_RS10485;anticodon=(pos:3900..3902);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10485;product=tRNA-Val NZ_JJLH01000039.1 RefSeq gene 3989 4064 . + . ID=gene-AD39_RS10480;Name=AD39_RS10480;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10480;old_locus_tag=AD39_2840 NZ_JJLH01000039.1 tRNAscan-SE tRNA 3989 4064 . + . ID=rna-AD39_RS10480;Parent=gene-AD39_RS10480;anticodon=(pos:4022..4024);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10480;product=tRNA-Val NZ_JJLH01000039.1 tRNAscan-SE exon 3989 4064 . + . ID=exon-AD39_RS10480-1;Parent=rna-AD39_RS10480;anticodon=(pos:4022..4024);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10480;product=tRNA-Val NZ_JJLH01000039.1 RefSeq gene 4067 4142 . + . ID=gene-AD39_RS10475;Name=AD39_RS10475;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS10475;old_locus_tag=AD39_2841 NZ_JJLH01000039.1 tRNAscan-SE tRNA 4067 4142 . + . ID=rna-AD39_RS10475;Parent=gene-AD39_RS10475;anticodon=(pos:4100..4102);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10475;product=tRNA-Lys NZ_JJLH01000039.1 tRNAscan-SE exon 4067 4142 . + . ID=exon-AD39_RS10475-1;Parent=rna-AD39_RS10475;anticodon=(pos:4100..4102);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS10475;product=tRNA-Lys NZ_JJLH01000039.1 RefSeq gene 4173 4298 . + . ID=gene-AD39_RS26220;Name=AD39_RS26220;gbkey=Gene;gene_biotype=ncRNA;locus_tag=AD39_RS26220 NZ_JJLH01000039.1 cmsearch ncRNA 4173 4298 . + . ID=rna-AD39_RS26220;Parent=gene-AD39_RS26220;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26220;product=RtT sRNA NZ_JJLH01000039.1 cmsearch exon 4173 4298 . + . ID=exon-AD39_RS26220-1;Parent=rna-AD39_RS26220;Dbxref=RFAM:RF00391;Note=rtT sRNA%2C processed from tyrT transcript;gbkey=ncRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26220;product=RtT sRNA NZ_JJLH01000039.1 RefSeq gene 4418 4759 . + . ID=gene-AD39_RS10470;Name=AD39_RS10470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10470;old_locus_tag=AD39_2842 NZ_JJLH01000039.1 Protein Homology CDS 4418 4759 . + 0 ID=cds-WP_000201411.1;Parent=gene-AD39_RS10470;Dbxref=GenBank:WP_000201411.1;Name=WP_000201411.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708263.1;locus_tag=AD39_RS10470;product=FlxA-like family protein;protein_id=WP_000201411.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 4750 5676 . - . ID=gene-AD39_RS10465;Name=yfeR;gbkey=Gene;gene=yfeR;gene_biotype=protein_coding;locus_tag=AD39_RS10465;old_locus_tag=AD39_2843 NZ_JJLH01000039.1 Protein Homology CDS 4750 5676 . - 0 ID=cds-WP_001109794.1;Parent=gene-AD39_RS10465;Dbxref=GenBank:WP_001109794.1;Name=WP_001109794.1;Ontology_term=GO:0003677,GO:0003700,GO:0005829;gbkey=CDS;gene=yfeR;go_component=cytosol|0005829||IEA;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416904.1;locus_tag=AD39_RS10465;product=LysR family transcriptional regulator;protein_id=WP_001109794.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 5766 6764 . + . ID=gene-AD39_RS10460;Name=yfeH;gbkey=Gene;gene=yfeH;gene_biotype=protein_coding;locus_tag=AD39_RS10460;old_locus_tag=AD39_2844 NZ_JJLH01000039.1 Protein Homology CDS 5766 6764 . + 0 ID=cds-WP_000765605.1;Parent=gene-AD39_RS10460;Dbxref=GenBank:WP_000765605.1;Name=WP_000765605.1;Ontology_term=GO:0006810,GO:0015293,GO:0016020;gbkey=CDS;gene=yfeH;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=transport|0006810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311309.1;locus_tag=AD39_RS10460;product=bile acid:sodium symporter family protein;protein_id=WP_000765605.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 6761 6979 . - . ID=gene-AD39_RS10455;Name=ypeB;gbkey=Gene;gene=ypeB;gene_biotype=protein_coding;locus_tag=AD39_RS10455;old_locus_tag=AD39_2845 NZ_JJLH01000039.1 Protein Homology CDS 6761 6979 . - 0 ID=cds-WP_000410201.1;Parent=gene-AD39_RS10455;Dbxref=GenBank:WP_000410201.1;Name=WP_000410201.1;gbkey=CDS;gene=ypeB;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588464.1;locus_tag=AD39_RS10455;product=DUF3820 family protein;protein_id=WP_000410201.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 6981 8996 . - . ID=gene-AD39_RS10450;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=AD39_RS10450;old_locus_tag=AD39_2846 NZ_JJLH01000039.1 Protein Homology CDS 6981 8996 . - 0 ID=cds-WP_000443665.1;Parent=gene-AD39_RS10450;Dbxref=GenBank:WP_000443665.1;Name=WP_000443665.1;Ontology_term=GO:0006260,GO:0006281,GO:0003677,GO:0003911;gbkey=CDS;gene=ligA;go_function=DNA binding|0003677||IEA,DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416906.1;locus_tag=AD39_RS10450;product=NAD-dependent DNA ligase LigA;protein_id=WP_000443665.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 9067 10053 . - . ID=gene-AD39_RS10445;Name=zipA;gbkey=Gene;gene=zipA;gene_biotype=protein_coding;locus_tag=AD39_RS10445;old_locus_tag=AD39_2847 NZ_JJLH01000039.1 Protein Homology CDS 9067 10053 . - 0 ID=cds-WP_032217258.1;Parent=gene-AD39_RS10445;Dbxref=GenBank:WP_032217258.1;Name=WP_032217258.1;Ontology_term=GO:0000917,GO:0005515,GO:0016020;gbkey=CDS;gene=zipA;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA;go_process=division septum assembly|0000917||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311311.1;locus_tag=AD39_RS10445;product=cell division protein ZipA;protein_id=WP_032217258.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 10283 11044 . + . ID=gene-AD39_RS10440;Name=cysZ;gbkey=Gene;gene=cysZ;gene_biotype=protein_coding;locus_tag=AD39_RS10440;old_locus_tag=AD39_2848 NZ_JJLH01000039.1 Protein Homology CDS 10283 11044 . + 0 ID=cds-WP_000254843.1;Parent=gene-AD39_RS10440;Dbxref=GenBank:WP_000254843.1;Name=WP_000254843.1;Ontology_term=GO:0000103,GO:0015116,GO:0005886;gbkey=CDS;gene=cysZ;go_component=plasma membrane|0005886||IEA;go_function=sulfate transmembrane transporter activity|0015116||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311312.1;locus_tag=AD39_RS10440;product=sulfate transporter CysZ;protein_id=WP_000254843.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 11229 12200 . + . ID=gene-AD39_RS10435;Name=cysK;gbkey=Gene;gene=cysK;gene_biotype=protein_coding;locus_tag=AD39_RS10435;old_locus_tag=AD39_2849 NZ_JJLH01000039.1 Protein Homology CDS 11229 12200 . + 0 ID=cds-WP_000034402.1;Parent=gene-AD39_RS10435;Dbxref=GenBank:WP_000034402.1;Name=WP_000034402.1;Ontology_term=GO:0006535,GO:0004124;gbkey=CDS;gene=cysK;go_function=cysteine synthase activity|0004124||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000034402.1;locus_tag=AD39_RS10435;product=cysteine synthase A;protein_id=WP_000034402.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 12584 12841 . + . ID=gene-AD39_RS10430;Name=ptsH;gbkey=Gene;gene=ptsH;gene_biotype=protein_coding;locus_tag=AD39_RS10430;old_locus_tag=AD39_2850 NZ_JJLH01000039.1 Protein Homology CDS 12584 12841 . + 0 ID=cds-WP_000487600.1;Parent=gene-AD39_RS10430;Dbxref=GenBank:WP_000487600.1;Name=WP_000487600.1;gbkey=CDS;gene=ptsH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003038086.1;locus_tag=AD39_RS10430;product=phosphocarrier protein Hpr;protein_id=WP_000487600.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 12886 14613 . + . ID=gene-AD39_RS10425;Name=ptsI;gbkey=Gene;gene=ptsI;gene_biotype=protein_coding;locus_tag=AD39_RS10425;old_locus_tag=AD39_2851 NZ_JJLH01000039.1 Protein Homology CDS 12886 14613 . + 0 ID=cds-WP_000623136.1;Parent=gene-AD39_RS10425;Dbxref=GenBank:WP_000623136.1;Name=WP_000623136.1;gbkey=CDS;gene=ptsI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311315.1;locus_tag=AD39_RS10425;product=phosphoenolpyruvate-protein phosphotransferase PtsI;protein_id=WP_000623136.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 14654 15163 . + . ID=gene-AD39_RS10420;Name=crr;gbkey=Gene;gene=crr;gene_biotype=protein_coding;locus_tag=AD39_RS10420;old_locus_tag=AD39_2852 NZ_JJLH01000039.1 Protein Homology CDS 14654 15163 . + 0 ID=cds-WP_000522247.1;Parent=gene-AD39_RS10420;Dbxref=GenBank:WP_000522247.1;Name=WP_000522247.1;Ontology_term=GO:0009401;gbkey=CDS;gene=crr;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015833547.1;locus_tag=AD39_RS10420;product=PTS glucose transporter subunit IIA;protein_id=WP_000522247.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 15205 16056 . - . ID=gene-AD39_RS10415;Name=pdxK;gbkey=Gene;gene=pdxK;gene_biotype=protein_coding;gene_synonym=thiJ;locus_tag=AD39_RS10415;old_locus_tag=AD39_2853 NZ_JJLH01000039.1 Protein Homology CDS 15205 16056 . - 0 ID=cds-WP_000096660.1;Parent=gene-AD39_RS10415;Dbxref=GenBank:WP_000096660.1;Name=WP_000096660.1;Ontology_term=GO:0009443,GO:0008478;gbkey=CDS;gene=pdxK;go_function=pyridoxal kinase activity|0008478||IEA;go_process=pyridoxal 5'-phosphate salvage|0009443||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708273.1;locus_tag=AD39_RS10415;product=pyridoxine/pyridoxal/pyridoxamine kinase;protein_id=WP_000096660.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 16161 16529 . + . ID=gene-AD39_RS10410;Name=yfeK;gbkey=Gene;gene=yfeK;gene_biotype=protein_coding;locus_tag=AD39_RS10410;old_locus_tag=AD39_2854 NZ_JJLH01000039.1 Protein Homology CDS 16161 16529 . + 0 ID=cds-WP_000719943.1;Parent=gene-AD39_RS10410;Dbxref=GenBank:WP_000719943.1;Name=WP_000719943.1;gbkey=CDS;gene=yfeK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001592994.1;locus_tag=AD39_RS10410;product=YfeK family protein;protein_id=WP_000719943.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 16532 17443 . - . ID=gene-AD39_RS10405;Name=cysM;gbkey=Gene;gene=cysM;gene_biotype=protein_coding;locus_tag=AD39_RS10405;old_locus_tag=AD39_2855 NZ_JJLH01000039.1 Protein Homology CDS 16532 17443 . - 0 ID=cds-WP_001297645.1;Parent=gene-AD39_RS10405;Dbxref=GenBank:WP_001297645.1;Name=WP_001297645.1;Ontology_term=GO:0006535,GO:0004124;gbkey=CDS;gene=cysM;go_function=cysteine synthase activity|0004124||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416916.1;locus_tag=AD39_RS10405;product=cysteine synthase B;protein_id=WP_001297645.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 17577 18674 . - . ID=gene-AD39_RS10400;Name=cysA;gbkey=Gene;gene=cysA;gene_biotype=protein_coding;locus_tag=AD39_RS10400;old_locus_tag=AD39_2856 NZ_JJLH01000039.1 Protein Homology CDS 17577 18674 . - 0 ID=cds-WP_000021040.1;Parent=gene-AD39_RS10400;Dbxref=GenBank:WP_000021040.1;Name=WP_000021040.1;Ontology_term=GO:1902358,GO:0005524,GO:0015419,GO:0016020,GO:0043190;gbkey=CDS;gene=cysA;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type sulfate transporter activity|0015419||IEA;go_process=sulfate transmembrane transport|1902358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416917.1;locus_tag=AD39_RS10400;product=sulfate/thiosulfate ABC transporter ATP-binding protein CysA;protein_id=WP_000021040.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 18664 19539 . - . ID=gene-AD39_RS10395;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=protein_coding;locus_tag=AD39_RS10395;old_locus_tag=AD39_2857 NZ_JJLH01000039.1 Protein Homology CDS 18664 19539 . - 0 ID=cds-WP_032283469.1;Parent=gene-AD39_RS10395;Dbxref=GenBank:WP_032283469.1;Name=WP_032283469.1;Ontology_term=GO:0055085,GO:1902358,GO:0015419,GO:0016020;gbkey=CDS;gene=cysW;go_component=membrane|0016020||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=transmembrane transport|0055085||IEA,sulfate transmembrane transport|1902358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026168.2;locus_tag=AD39_RS10395;product=sulfate/thiosulfate ABC transporter permease CysW;protein_id=WP_032283469.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 19539 20372 . - . ID=gene-AD39_RS10390;Name=cysT;gbkey=Gene;gene=cysT;gene_biotype=protein_coding;locus_tag=AD39_RS10390;old_locus_tag=AD39_2858 NZ_JJLH01000039.1 Protein Homology CDS 19539 20372 . - 0 ID=cds-WP_001631659.1;Parent=gene-AD39_RS10390;Dbxref=GenBank:WP_001631659.1;Name=WP_001631659.1;Ontology_term=GO:0055085,GO:1902358,GO:0015419,GO:0016020;gbkey=CDS;gene=cysT;go_component=membrane|0016020||IEA;go_function=ABC-type sulfate transporter activity|0015419||IEA;go_process=transmembrane transport|0055085||IEA,sulfate transmembrane transport|1902358||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000458418.1;locus_tag=AD39_RS10390;product=sulfate/thiosulfate ABC transporter permease CysT;protein_id=WP_001631659.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 20372 21388 . - . ID=gene-AD39_RS10385;Name=cysP;gbkey=Gene;gene=cysP;gene_biotype=protein_coding;locus_tag=AD39_RS10385;old_locus_tag=AD39_2859 NZ_JJLH01000039.1 Protein Homology CDS 20372 21388 . - 0 ID=cds-WP_000290223.1;Parent=gene-AD39_RS10385;Dbxref=GenBank:WP_000290223.1;Name=WP_000290223.1;gbkey=CDS;gene=cysP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311323.1;locus_tag=AD39_RS10385;product=thiosulfate/sulfate ABC transporter substrate-binding protein CysP;protein_id=WP_000290223.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 21559 22350 . - . ID=gene-AD39_RS10380;Name=ucpA;gbkey=Gene;gene=ucpA;gene_biotype=protein_coding;locus_tag=AD39_RS10380;old_locus_tag=AD39_2860 NZ_JJLH01000039.1 Protein Homology CDS 21559 22350 . - 0 ID=cds-WP_000517431.1;Parent=gene-AD39_RS10380;Dbxref=GenBank:WP_000517431.1;Name=WP_000517431.1;gbkey=CDS;gene=ucpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416921.4;locus_tag=AD39_RS10380;product=SDR family oxidoreductase UcpA;protein_id=WP_000517431.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 22479 23336 . - . ID=gene-AD39_RS10375;Name=murR;gbkey=Gene;gene=murR;gene_biotype=protein_coding;locus_tag=AD39_RS10375;old_locus_tag=AD39_2861 NZ_JJLH01000039.1 Protein Homology CDS 22479 23336 . - 0 ID=cds-WP_000966439.1;Parent=gene-AD39_RS10375;Dbxref=GenBank:WP_000966439.1;Name=WP_000966439.1;gbkey=CDS;gene=murR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311325.1;locus_tag=AD39_RS10375;product=HTH-type transcriptional regulator MurR;protein_id=WP_000966439.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 23500 24396 . + . ID=gene-AD39_RS10370;Name=murQ;gbkey=Gene;gene=murQ;gene_biotype=protein_coding;locus_tag=AD39_RS10370;old_locus_tag=AD39_2862 NZ_JJLH01000039.1 Protein Homology CDS 23500 24396 . + 0 ID=cds-WP_001175611.1;Parent=gene-AD39_RS10370;Dbxref=GenBank:WP_001175611.1;Name=WP_001175611.1;Ontology_term=GO:0009254,GO:0046348,GO:0016835;gbkey=CDS;gene=murQ;go_function=carbon-oxygen lyase activity|0016835||IEA;go_process=peptidoglycan turnover|0009254||IEA,amino sugar catabolic process|0046348||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311326.1;locus_tag=AD39_RS10370;product=N-acetylmuramic acid 6-phosphate etherase;protein_id=WP_001175611.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 24400 25824 . + . ID=gene-AD39_RS10365;Name=murP;gbkey=Gene;gene=murP;gene_biotype=protein_coding;locus_tag=AD39_RS10365;old_locus_tag=AD39_2863 NZ_JJLH01000039.1 Protein Homology CDS 24400 25824 . + 0 ID=cds-WP_032287596.1;Parent=gene-AD39_RS10365;Dbxref=GenBank:WP_032287596.1;Name=WP_032287596.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;gene=murP;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416924.1;locus_tag=AD39_RS10365;product=PTS N-acetylmuramic acid transporter subunit IIBC;protein_id=WP_032287596.1;transl_table=11 NZ_JJLH01000039.1 RefSeq gene 25829 27133 . + . ID=gene-AD39_RS10360;Name=pbp4b;gbkey=Gene;gene=pbp4b;gene_biotype=protein_coding;locus_tag=AD39_RS10360;old_locus_tag=AD39_2864 NZ_JJLH01000039.1 Protein Homology CDS 25829 27133 . + 0 ID=cds-WP_032283470.1;Parent=gene-AD39_RS10360;Dbxref=GenBank:WP_032283470.1;Name=WP_032283470.1;gbkey=CDS;gene=pbp4b;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416925.2;locus_tag=AD39_RS10360;product=penicillin binding protein PBP4B;protein_id=WP_032283470.1;transl_table=11 NZ_JJLH01000039.1 RefSeq pseudogene 27411 27570 . + . ID=gene-AD39_RS28595;Name=AD39_RS28595;end_range=27570,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28595;old_locus_tag=AD39_2865;partial=true;pseudo=true NZ_JJLH01000039.1 Protein Homology CDS 27411 27570 . + 0 ID=cds-AD39_RS28595;Parent=gene-AD39_RS28595;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=27570,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000399648.1;locus_tag=AD39_RS28595;partial=true;product=IS110 family transposase;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000040.1 1 172641 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000040.1 RefSeq region 1 172641 . + . ID=NZ_JJLH01000040.1:1..172641;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000040.1 RefSeq gene 204 1184 . + . ID=gene-AD39_RS10350;Name=AD39_RS10350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS10350;old_locus_tag=AD39_2866 NZ_JJLH01000040.1 Protein Homology CDS 204 1184 . + 0 ID=cds-WP_000399648.1-2;Parent=gene-AD39_RS10350;Dbxref=GenBank:WP_000399648.1;Name=WP_000399648.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904434.1;locus_tag=AD39_RS10350;product=IS110-like element IS621 family transposase;protein_id=WP_000399648.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 1445 2344 . - . ID=gene-AD39_RS10345;Name=yfeX;gbkey=Gene;gene=yfeX;gene_biotype=protein_coding;locus_tag=AD39_RS10345;old_locus_tag=AD39_2867 NZ_JJLH01000040.1 Protein Homology CDS 1445 2344 . - 0 ID=cds-WP_000084590.1;Parent=gene-AD39_RS10345;Dbxref=GenBank:WP_000084590.1;Name=WP_000084590.1;gbkey=CDS;gene=yfeX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311329.2;locus_tag=AD39_RS10345;product=porphyrinogen peroxidase;protein_id=WP_000084590.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 2440 3015 . - . ID=gene-AD39_RS10340;Name=yfeY;gbkey=Gene;gene=yfeY;gene_biotype=protein_coding;locus_tag=AD39_RS10340;old_locus_tag=AD39_2868 NZ_JJLH01000040.1 Protein Homology CDS 2440 3015 . - 0 ID=cds-WP_000838945.1;Parent=gene-AD39_RS10340;Dbxref=GenBank:WP_000838945.1;Name=WP_000838945.1;gbkey=CDS;gene=yfeY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311330.1;locus_tag=AD39_RS10340;product=RpoE-regulated lipoprotein;protein_id=WP_000838945.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 3076 3525 . - . ID=gene-AD39_RS10335;Name=yfeZ;gbkey=Gene;gene=yfeZ;gene_biotype=protein_coding;locus_tag=AD39_RS10335;old_locus_tag=AD39_2869 NZ_JJLH01000040.1 Protein Homology CDS 3076 3525 . - 0 ID=cds-WP_001296281.1;Parent=gene-AD39_RS10335;Dbxref=GenBank:WP_001296281.1;Name=WP_001296281.1;gbkey=CDS;gene=yfeZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708284.2;locus_tag=AD39_RS10335;product=DUF2919 domain-containing protein;protein_id=WP_001296281.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 3512 3937 . - . ID=gene-AD39_RS10330;Name=ypeA;gbkey=Gene;gene=ypeA;gene_biotype=protein_coding;locus_tag=AD39_RS10330;old_locus_tag=AD39_2870 NZ_JJLH01000040.1 Protein Homology CDS 3512 3937 . - 0 ID=cds-WP_000406000.1;Parent=gene-AD39_RS10330;Dbxref=GenBank:WP_000406000.1;Name=WP_000406000.1;Ontology_term=GO:0008080;gbkey=CDS;gene=ypeA;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311332.2;locus_tag=AD39_RS10330;product=GNAT family acetyltransferase;protein_id=WP_000406000.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 4151 5020 . + . ID=gene-AD39_RS10325;Name=amiA;gbkey=Gene;gene=amiA;gene_biotype=protein_coding;locus_tag=AD39_RS10325;old_locus_tag=AD39_2871 NZ_JJLH01000040.1 Protein Homology CDS 4151 5020 . + 0 ID=cds-WP_000102886.1;Parent=gene-AD39_RS10325;Dbxref=GenBank:WP_000102886.1;Name=WP_000102886.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;gene=amiA;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416930.1;locus_tag=AD39_RS10325;product=N-acetylmuramoyl-L-alanine amidase AmiA;protein_id=WP_000102886.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 5024 5923 . + . ID=gene-AD39_RS10320;Name=hemF;gbkey=Gene;gene=hemF;gene_biotype=protein_coding;locus_tag=AD39_RS10320;old_locus_tag=AD39_2872 NZ_JJLH01000040.1 Protein Homology CDS 5024 5923 . + 0 ID=cds-WP_032283655.1;Parent=gene-AD39_RS10320;Dbxref=GenBank:WP_032283655.1;Name=WP_032283655.1;Ontology_term=GO:0006779,GO:0004109;gbkey=CDS;gene=hemF;go_function=coproporphyrinogen oxidase activity|0004109||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311334.1;locus_tag=AD39_RS10320;product=oxygen-dependent coproporphyrinogen oxidase;protein_id=WP_032283655.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 5929 6981 . - . ID=gene-AD39_RS10315;Name=eutR;gbkey=Gene;gene=eutR;gene_biotype=protein_coding;locus_tag=AD39_RS10315;old_locus_tag=AD39_2873 NZ_JJLH01000040.1 Protein Homology CDS 5929 6981 . - 0 ID=cds-WP_032287597.1;Parent=gene-AD39_RS10315;Dbxref=GenBank:WP_032287597.1;Name=WP_032287597.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=eutR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311335.1;locus_tag=AD39_RS10315;product=HTH-type transcriptional regulator EutR;protein_id=WP_032287597.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 7027 7527 . - . ID=gene-AD39_RS10310;Name=eutK;gbkey=Gene;gene=eutK;gene_biotype=protein_coding;locus_tag=AD39_RS10310;old_locus_tag=AD39_2874 NZ_JJLH01000040.1 Protein Homology CDS 7027 7527 . - 0 ID=cds-WP_001295463.1;Parent=gene-AD39_RS10310;Dbxref=GenBank:WP_001295463.1;Name=WP_001295463.1;gbkey=CDS;gene=eutK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311336.2;locus_tag=AD39_RS10310;product=ethanolamine utilization microcompartment protein EutK;protein_id=WP_001295463.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 7540 8199 . - . ID=gene-AD39_RS10305;Name=eutL;gbkey=Gene;gene=eutL;gene_biotype=protein_coding;locus_tag=AD39_RS10305;old_locus_tag=AD39_2875 NZ_JJLH01000040.1 Protein Homology CDS 7540 8199 . - 0 ID=cds-WP_001111038.1;Parent=gene-AD39_RS10305;Dbxref=GenBank:WP_001111038.1;Name=WP_001111038.1;Ontology_term=GO:0005198,GO:0031469;gbkey=CDS;gene=eutL;go_component=bacterial microcompartment|0031469||IEA;go_function=structural molecule activity|0005198||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708289.1;locus_tag=AD39_RS10305;product=ethanolamine utilization microcompartment protein EutL;protein_id=WP_001111038.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 8209 9096 . - . ID=gene-AD39_RS10300;Name=eutC;gbkey=Gene;gene=eutC;gene_biotype=protein_coding;locus_tag=AD39_RS10300;old_locus_tag=AD39_2876 NZ_JJLH01000040.1 Protein Homology CDS 8209 9096 . - 0 ID=cds-WP_000372364.1;Parent=gene-AD39_RS10300;Dbxref=GenBank:WP_000372364.1;Name=WP_000372364.1;gbkey=CDS;gene=eutC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416935.1;locus_tag=AD39_RS10300;product=ethanolamine ammonia-lyase subunit beta;protein_id=WP_000372364.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 9117 10478 . - . ID=gene-AD39_RS10295;Name=eutB;gbkey=Gene;gene=eutB;gene_biotype=protein_coding;locus_tag=AD39_RS10295;old_locus_tag=AD39_2877 NZ_JJLH01000040.1 Protein Homology CDS 9117 10478 . - 0 ID=cds-WP_001399187.1;Parent=gene-AD39_RS10295;Dbxref=GenBank:WP_001399187.1;Name=WP_001399187.1;gbkey=CDS;gene=eutB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311339.1;locus_tag=AD39_RS10295;product=ethanolamine ammonia-lyase subunit alpha;protein_id=WP_001399187.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 10490 11893 . - . ID=gene-AD39_RS10290;Name=eutA;gbkey=Gene;gene=eutA;gene_biotype=protein_coding;locus_tag=AD39_RS10290;old_locus_tag=AD39_2878 NZ_JJLH01000040.1 Protein Homology CDS 10490 11893 . - 0 ID=cds-WP_001097477.1;Parent=gene-AD39_RS10290;Dbxref=GenBank:WP_001097477.1;Name=WP_001097477.1;gbkey=CDS;gene=eutA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311340.1;locus_tag=AD39_RS10290;product=ethanolamine ammonia-lyase reactivating factor EutA;protein_id=WP_001097477.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 11890 13116 . - . ID=gene-AD39_RS10285;Name=eutH;gbkey=Gene;gene=eutH;gene_biotype=protein_coding;locus_tag=AD39_RS10285;old_locus_tag=AD39_2879 NZ_JJLH01000040.1 Protein Homology CDS 11890 13116 . - 0 ID=cds-WP_000512372.1;Parent=gene-AD39_RS10285;Dbxref=GenBank:WP_000512372.1;Name=WP_000512372.1;Ontology_term=GO:0034229,GO:0034228,GO:0016020;gbkey=CDS;gene=eutH;go_component=membrane|0016020||IEA;go_function=ethanolamine transmembrane transporter activity|0034228||IEA;go_process=ethanolamine transport|0034229||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416947.1;locus_tag=AD39_RS10285;product=ethanolamine utilization protein EutH;protein_id=WP_000512372.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 13233 14420 . - . ID=gene-AD39_RS10280;Name=eutG;gbkey=Gene;gene=eutG;gene_biotype=protein_coding;locus_tag=AD39_RS10280;old_locus_tag=AD39_2880 NZ_JJLH01000040.1 Protein Homology CDS 13233 14420 . - 0 ID=cds-WP_001330930.1;Parent=gene-AD39_RS10280;Dbxref=GenBank:WP_001330930.1;Name=WP_001330930.1;Ontology_term=GO:0016491;gbkey=CDS;gene=eutG;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311342.2;locus_tag=AD39_RS10280;product=ethanolamine utilization ethanol dehydrogenase EutG;protein_id=WP_001330930.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 14410 15246 . - . ID=gene-AD39_RS10275;Name=eutJ;gbkey=Gene;gene=eutJ;gene_biotype=protein_coding;locus_tag=AD39_RS10275;old_locus_tag=AD39_2881 NZ_JJLH01000040.1 Protein Homology CDS 14410 15246 . - 0 ID=cds-WP_000929726.1;Parent=gene-AD39_RS10275;Dbxref=GenBank:WP_000929726.1;Name=WP_000929726.1;Ontology_term=GO:0051301,GO:0005515;gbkey=CDS;gene=eutJ;go_function=protein binding|0005515||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416949.1;locus_tag=AD39_RS10275;product=ethanolamine utilization protein EutJ;protein_id=WP_000929726.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 15257 16660 . - . ID=gene-AD39_RS10270;Name=eutE;gbkey=Gene;gene=eutE;gene_biotype=protein_coding;locus_tag=AD39_RS10270;old_locus_tag=AD39_2882 NZ_JJLH01000040.1 Protein Homology CDS 15257 16660 . - 0 ID=cds-WP_001075711.1;Parent=gene-AD39_RS10270;Dbxref=GenBank:WP_001075711.1;Name=WP_001075711.1;Ontology_term=GO:0004029,GO:0008774;gbkey=CDS;gene=eutE;go_function=aldehyde dehydrogenase (NAD+) activity|0004029||IEA,acetaldehyde dehydrogenase (acetylating) activity|0008774||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416950.1;locus_tag=AD39_RS10270;product=aldehyde dehydrogenase family protein;protein_id=WP_001075711.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 16672 16959 . - . ID=gene-AD39_RS10265;Name=eutN;gbkey=Gene;gene=eutN;gene_biotype=protein_coding;locus_tag=AD39_RS10265;old_locus_tag=AD39_2883 NZ_JJLH01000040.1 Protein Homology CDS 16672 16959 . - 0 ID=cds-WP_000762196.1;Parent=gene-AD39_RS10265;Dbxref=GenBank:WP_000762196.1;Name=WP_000762196.1;gbkey=CDS;gene=eutN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416951.1;locus_tag=AD39_RS10265;product=ethanolamine utilization microcompartment protein EutN;protein_id=WP_000762196.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 17066 17359 . - . ID=gene-AD39_RS10260;Name=eutM;gbkey=Gene;gene=eutM;gene_biotype=protein_coding;locus_tag=AD39_RS10260;old_locus_tag=AD39_2884 NZ_JJLH01000040.1 Protein Homology CDS 17066 17359 . - 0 ID=cds-WP_000387713.1;Parent=gene-AD39_RS10260;Dbxref=GenBank:WP_000387713.1;Name=WP_000387713.1;gbkey=CDS;gene=eutM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416952.2;locus_tag=AD39_RS10260;product=ethanolamine utilization microcompartment protein EutM;protein_id=WP_000387713.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 17398 18414 . - . ID=gene-AD39_RS10255;Name=pta;gbkey=Gene;gene=pta;gene_biotype=protein_coding;locus_tag=AD39_RS10255;old_locus_tag=AD39_2885 NZ_JJLH01000040.1 Protein Homology CDS 17398 18414 . - 0 ID=cds-WP_000582978.1;Parent=gene-AD39_RS10255;Dbxref=GenBank:WP_000582978.1;Name=WP_000582978.1;Ontology_term=GO:0006086,GO:0008959;gbkey=CDS;gene=pta;go_function=phosphate acetyltransferase activity|0008959||IEA;go_process=pyruvate decarboxylation to acetyl-CoA|0006086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416953.1;locus_tag=AD39_RS10255;product=phosphate acetyltransferase;protein_id=WP_000582978.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 18411 19214 . - . ID=gene-AD39_RS10250;Name=eutT;gbkey=Gene;gene=eutT;gene_biotype=protein_coding;locus_tag=AD39_RS10250;old_locus_tag=AD39_2886 NZ_JJLH01000040.1 Protein Homology CDS 18411 19214 . - 0 ID=cds-WP_000651298.1;Parent=gene-AD39_RS10250;Dbxref=GenBank:WP_000651298.1;Name=WP_000651298.1;Ontology_term=GO:0006580,GO:0008817;gbkey=CDS;gene=eutT;go_function=corrinoid adenosyltransferase activity|0008817||IEA;go_process=ethanolamine metabolic process|0006580||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416954.1;locus_tag=AD39_RS10250;product=ethanolamine utilization cob(I)yrinic acid a%2Cc-diamide adenosyltransferase EutT;protein_id=WP_000651298.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 19211 19912 . - . ID=gene-AD39_RS10245;Name=eutQ;gbkey=Gene;gene=eutQ;gene_biotype=protein_coding;locus_tag=AD39_RS10245;old_locus_tag=AD39_2887 NZ_JJLH01000040.1 Protein Homology CDS 19211 19912 . - 0 ID=cds-WP_000733903.1;Parent=gene-AD39_RS10245;Dbxref=GenBank:WP_000733903.1;Name=WP_000733903.1;gbkey=CDS;gene=eutQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416955.1;locus_tag=AD39_RS10245;product=ethanolamine utilization acetate kinase EutQ;protein_id=WP_000733903.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 19887 20366 . - . ID=gene-AD39_RS10240;Name=eutP;gbkey=Gene;gene=eutP;gene_biotype=protein_coding;locus_tag=AD39_RS10240;old_locus_tag=AD39_2888 NZ_JJLH01000040.1 Protein Homology CDS 19887 20366 . - 0 ID=cds-WP_000820764.1;Parent=gene-AD39_RS10240;Dbxref=GenBank:WP_000820764.1;Name=WP_000820764.1;gbkey=CDS;gene=eutP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311350.1;locus_tag=AD39_RS10240;product=ethanolamine utilization acetate kinase EutP;protein_id=WP_000820764.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 20379 20714 . - . ID=gene-AD39_RS10235;Name=eutS;gbkey=Gene;gene=eutS;gene_biotype=protein_coding;locus_tag=AD39_RS10235;old_locus_tag=AD39_2889 NZ_JJLH01000040.1 Protein Homology CDS 20379 20714 . - 0 ID=cds-WP_001333989.1;Parent=gene-AD39_RS10235;Dbxref=GenBank:WP_001333989.1;Name=WP_001333989.1;gbkey=CDS;gene=eutS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311351.2;locus_tag=AD39_RS10235;product=ethanolamine utilization microcompartment protein EutS;protein_id=WP_001333989.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 21007 23286 . - . ID=gene-AD39_RS10230;Name=maeB;gbkey=Gene;gene=maeB;gene_biotype=protein_coding;locus_tag=AD39_RS10230;old_locus_tag=AD39_2890 NZ_JJLH01000040.1 Protein Homology CDS 21007 23286 . - 0 ID=cds-WP_000342642.1;Parent=gene-AD39_RS10230;Dbxref=GenBank:WP_000342642.1;Name=WP_000342642.1;gbkey=CDS;gene=maeB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708302.1;locus_tag=AD39_RS10230;product=NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase;protein_id=WP_000342642.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 23575 24525 . + . ID=gene-AD39_RS10225;Name=tal;gbkey=Gene;gene=tal;gene_biotype=protein_coding;locus_tag=AD39_RS10225;old_locus_tag=AD39_2891 NZ_JJLH01000040.1 Protein Homology CDS 23575 24525 . + 0 ID=cds-WP_001003709.1;Parent=gene-AD39_RS10225;Dbxref=GenBank:WP_001003709.1;Name=WP_001003709.1;Ontology_term=GO:0006098,GO:0004801,GO:0005737;gbkey=CDS;gene=tal;go_component=cytoplasm|0005737||IEA;go_function=transaldolase activity|0004801||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311353.1;locus_tag=AD39_RS10225;product=transaldolase;protein_id=WP_001003709.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 24545 26548 . + . ID=gene-AD39_RS10220;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=AD39_RS10220;old_locus_tag=AD39_2892 NZ_JJLH01000040.1 Protein Homology CDS 24545 26548 . + 0 ID=cds-WP_001462678.1;Parent=gene-AD39_RS10220;Dbxref=GenBank:WP_001462678.1;Name=WP_001462678.1;Ontology_term=GO:0004802;gbkey=CDS;gene=tkt;go_function=transketolase activity|0004802||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311354.1;locus_tag=AD39_RS10220;product=transketolase;protein_id=WP_001462678.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 26624 27667 . - . ID=gene-AD39_RS10215;Name=ypfG;gbkey=Gene;gene=ypfG;gene_biotype=protein_coding;locus_tag=AD39_RS10215;old_locus_tag=AD39_2893 NZ_JJLH01000040.1 Protein Homology CDS 26624 27667 . - 0 ID=cds-WP_001270536.1;Parent=gene-AD39_RS10215;Dbxref=GenBank:WP_001270536.1;Name=WP_001270536.1;gbkey=CDS;gene=ypfG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311355.1;locus_tag=AD39_RS10215;product=DUF1176 domain-containing protein;protein_id=WP_001270536.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 27793 28368 . - . ID=gene-AD39_RS10210;Name=nudK;gbkey=Gene;gene=nudK;gene_biotype=protein_coding;locus_tag=AD39_RS10210;old_locus_tag=AD39_2894 NZ_JJLH01000040.1 Protein Homology CDS 27793 28368 . - 0 ID=cds-WP_000193711.1;Parent=gene-AD39_RS10210;Dbxref=GenBank:WP_000193711.1;Name=WP_000193711.1;Ontology_term=GO:0016818,GO:0046872;gbkey=CDS;gene=nudK;go_function=hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides|0016818||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311356.1;locus_tag=AD39_RS10210;product=GDP-mannose pyrophosphatase NudK;protein_id=WP_000193711.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 28436 30415 . - . ID=gene-AD39_RS10205;Name=aegA;gbkey=Gene;gene=aegA;gene_biotype=protein_coding;locus_tag=AD39_RS10205;old_locus_tag=AD39_2895 NZ_JJLH01000040.1 Protein Homology CDS 28436 30415 . - 0 ID=cds-WP_001078875.1;Parent=gene-AD39_RS10205;Dbxref=GenBank:WP_001078875.1;Name=WP_001078875.1;Ontology_term=GO:0016491;gbkey=CDS;gene=aegA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416963.1;locus_tag=AD39_RS10205;product=formate-dependent uric acid utilization protein AegA;protein_id=WP_001078875.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 30621 32321 . + . ID=gene-AD39_RS10200;Name=narQ;gbkey=Gene;gene=narQ;gene_biotype=protein_coding;locus_tag=AD39_RS10200;old_locus_tag=AD39_2897 NZ_JJLH01000040.1 Protein Homology CDS 30621 32321 . + 0 ID=cds-WP_000636129.1;Parent=gene-AD39_RS10200;Dbxref=GenBank:WP_000636129.1;Name=WP_000636129.1;Ontology_term=GO:0000160,GO:0000155,GO:0046983,GO:0016020;gbkey=CDS;gene=narQ;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA,protein dimerization activity|0046983||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416964.1;locus_tag=AD39_RS10200;product=nitrate/nitrite two-component system sensor histidine kinase NarQ;protein_id=WP_000636129.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 32485 35598 . + . ID=gene-AD39_RS10195;Name=acrD;gbkey=Gene;gene=acrD;gene_biotype=protein_coding;locus_tag=AD39_RS10195;old_locus_tag=AD39_2898 NZ_JJLH01000040.1 Protein Homology CDS 32485 35598 . + 0 ID=cds-WP_001273136.1;Parent=gene-AD39_RS10195;Dbxref=GenBank:WP_001273136.1;Name=WP_001273136.1;Ontology_term=GO:0042908,GO:0015562;gbkey=CDS;gene=acrD;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=xenobiotic transport|0042908||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416965.1;locus_tag=AD39_RS10195;product=multidrug efflux RND transporter permease AcrD;protein_id=WP_001273136.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 35697 35756 . - . ID=gene-AD39_RS28610;Name=ypfM;gbkey=Gene;gene=ypfM;gene_biotype=protein_coding;locus_tag=AD39_RS28610 NZ_JJLH01000040.1 Protein Homology CDS 35697 35756 . - 0 ID=cds-WP_001386977.1;Parent=gene-AD39_RS28610;Dbxref=GenBank:WP_001386977.1;Name=WP_001386977.1;gbkey=CDS;gene=ypfM;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165325.1;locus_tag=AD39_RS28610;product=protein YpfM;protein_id=WP_001386977.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 36137 36493 . + . ID=gene-AD39_RS10190;Name=yffB;gbkey=Gene;gene=yffB;gene_biotype=protein_coding;locus_tag=AD39_RS10190;old_locus_tag=AD39_2899 NZ_JJLH01000040.1 Protein Homology CDS 36137 36493 . + 0 ID=cds-WP_000258247.1;Parent=gene-AD39_RS10190;Dbxref=GenBank:WP_000258247.1;Name=WP_000258247.1;gbkey=CDS;gene=yffB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708309.1;locus_tag=AD39_RS10190;product=ArsC family reductase;protein_id=WP_000258247.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 36497 37624 . + . ID=gene-AD39_RS10185;Name=dapE;gbkey=Gene;gene=dapE;gene_biotype=protein_coding;locus_tag=AD39_RS10185;old_locus_tag=AD39_2900 NZ_JJLH01000040.1 Protein Homology CDS 36497 37624 . + 0 ID=cds-WP_001277809.1;Parent=gene-AD39_RS10185;Dbxref=GenBank:WP_001277809.1;Name=WP_001277809.1;Ontology_term=GO:0009089,GO:0009014;gbkey=CDS;gene=dapE;go_function=succinyl-diaminopimelate desuccinylase activity|0009014||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020078199.1;locus_tag=AD39_RS10185;product=succinyl-diaminopimelate desuccinylase;protein_id=WP_001277809.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 37652 37852 . + . ID=gene-AD39_RS10180;Name=ypfN;gbkey=Gene;gene=ypfN;gene_biotype=protein_coding;locus_tag=AD39_RS10180;old_locus_tag=AD39_2901 NZ_JJLH01000040.1 Protein Homology CDS 37652 37852 . + 0 ID=cds-WP_000383836.1;Parent=gene-AD39_RS10180;Dbxref=GenBank:WP_000383836.1;Name=WP_000383836.1;gbkey=CDS;gene=ypfN;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588465.1;locus_tag=AD39_RS10180;product=YpfN family protein;protein_id=WP_000383836.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 37962 38660 . - . ID=gene-AD39_RS10175;Name=ypfH;gbkey=Gene;gene=ypfH;gene_biotype=protein_coding;locus_tag=AD39_RS10175;old_locus_tag=AD39_2902 NZ_JJLH01000040.1 Protein Homology CDS 37962 38660 . - 0 ID=cds-WP_000679823.1;Parent=gene-AD39_RS10175;Dbxref=GenBank:WP_000679823.1;Name=WP_000679823.1;Ontology_term=GO:0016787;gbkey=CDS;gene=ypfH;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416968.2;locus_tag=AD39_RS10175;product=esterase;protein_id=WP_000679823.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 38734 40749 . - . ID=gene-AD39_RS10170;Name=tmcA;gbkey=Gene;gene=tmcA;gene_biotype=protein_coding;locus_tag=AD39_RS10170;old_locus_tag=AD39_2903 NZ_JJLH01000040.1 Protein Homology CDS 38734 40749 . - 0 ID=cds-WP_032283657.1;Parent=gene-AD39_RS10170;Dbxref=GenBank:WP_032283657.1;Name=WP_032283657.1;gbkey=CDS;gene=tmcA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311363.1;locus_tag=AD39_RS10170;product=tRNA cytosine(34) acetyltransferase TmcA;protein_id=WP_032283657.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 40764 41627 . - . ID=gene-AD39_RS10165;Name=ypfJ;gbkey=Gene;gene=ypfJ;gene_biotype=protein_coding;locus_tag=AD39_RS10165;old_locus_tag=AD39_2904 NZ_JJLH01000040.1 Protein Homology CDS 40764 41627 . - 0 ID=cds-WP_001267507.1;Parent=gene-AD39_RS10165;Dbxref=GenBank:WP_001267507.1;Name=WP_001267507.1;gbkey=CDS;gene=ypfJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311364.1;locus_tag=AD39_RS10165;product=KPN_02809 family neutral zinc metallopeptidase;protein_id=WP_001267507.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 41774 42172 . - . ID=gene-AD39_RS10160;Name=vapC;gbkey=Gene;gene=vapC;gene_biotype=protein_coding;locus_tag=AD39_RS10160;old_locus_tag=AD39_2905 NZ_JJLH01000040.1 Protein Homology CDS 41774 42172 . - 0 ID=cds-WP_000911330.1;Parent=gene-AD39_RS10160;Dbxref=GenBank:WP_000911330.1;Name=WP_000911330.1;Ontology_term=GO:0000287,GO:0004540;gbkey=CDS;gene=vapC;go_function=magnesium ion binding|0000287||IEA,RNA nuclease activity|0004540||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_490590.1;locus_tag=AD39_RS10160;product=type II toxin-antitoxin system tRNA(fMet)-specific endonuclease VapC;protein_id=WP_000911330.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 42172 42399 . - . ID=gene-AD39_RS10155;Name=vapB;gbkey=Gene;gene=vapB;gene_biotype=protein_coding;locus_tag=AD39_RS10155;old_locus_tag=AD39_2906 NZ_JJLH01000040.1 Protein Homology CDS 42172 42399 . - 0 ID=cds-WP_000450524.1;Parent=gene-AD39_RS10155;Dbxref=GenBank:WP_000450524.1;Name=WP_000450524.1;gbkey=CDS;gene=vapB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858379.1;locus_tag=AD39_RS10155;product=toxin-antitoxin system antitoxin VapB;protein_id=WP_000450524.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 42553 43266 . - . ID=gene-AD39_RS10150;Name=purC;gbkey=Gene;gene=purC;gene_biotype=protein_coding;locus_tag=AD39_RS10150;old_locus_tag=AD39_2907 NZ_JJLH01000040.1 Protein Homology CDS 42553 43266 . - 0 ID=cds-WP_001295467.1;Parent=gene-AD39_RS10150;Dbxref=GenBank:WP_001295467.1;Name=WP_001295467.1;Ontology_term=GO:0006164,GO:0004639;gbkey=CDS;gene=purC;go_function=phosphoribosylaminoimidazolesuccinocarboxamide synthase activity|0004639||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017458944.1;locus_tag=AD39_RS10150;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=WP_001295467.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 43479 44513 . - . ID=gene-AD39_RS10145;Name=bamC;gbkey=Gene;gene=bamC;gene_biotype=protein_coding;locus_tag=AD39_RS10145;old_locus_tag=AD39_2908 NZ_JJLH01000040.1 Protein Homology CDS 43479 44513 . - 0 ID=cds-WP_001297320.1;Parent=gene-AD39_RS10145;Dbxref=GenBank:WP_001297320.1;Name=WP_001297320.1;gbkey=CDS;gene=bamC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708316.2;locus_tag=AD39_RS10145;product=outer membrane protein assembly factor BamC;protein_id=WP_001297320.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 44530 45408 . - . ID=gene-AD39_RS10140;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;locus_tag=AD39_RS10140;old_locus_tag=AD39_2909 NZ_JJLH01000040.1 Protein Homology CDS 44530 45408 . - 0 ID=cds-WP_001295469.1;Parent=gene-AD39_RS10140;Dbxref=GenBank:WP_001295469.1;Name=WP_001295469.1;Ontology_term=GO:0009089,GO:0008840;gbkey=CDS;gene=dapA;go_function=4-hydroxy-tetrahydrodipicolinate synthase activity|0008840||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001311023.1;locus_tag=AD39_RS10140;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_001295469.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 45554 46126 . + . ID=gene-AD39_RS10135;Name=gcvR;gbkey=Gene;gene=gcvR;gene_biotype=protein_coding;locus_tag=AD39_RS10135;old_locus_tag=AD39_2910 NZ_JJLH01000040.1 Protein Homology CDS 45554 46126 . + 0 ID=cds-WP_000176187.1;Parent=gene-AD39_RS10135;Dbxref=GenBank:WP_000176187.1;Name=WP_000176187.1;gbkey=CDS;gene=gcvR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708318.1;locus_tag=AD39_RS10135;product=glycine cleavage system transcriptional repressor;protein_id=WP_000176187.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 46126 46596 . + . ID=gene-AD39_RS10130;Name=bcp;gbkey=Gene;gene=bcp;gene_biotype=protein_coding;locus_tag=AD39_RS10130;old_locus_tag=AD39_2911 NZ_JJLH01000040.1 Protein Homology CDS 46126 46596 . + 0 ID=cds-WP_001068682.1;Parent=gene-AD39_RS10130;Dbxref=GenBank:WP_001068682.1;Name=WP_001068682.1;Ontology_term=GO:0016209,GO:0016491;gbkey=CDS;gene=bcp;go_function=antioxidant activity|0016209||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311369.1;locus_tag=AD39_RS10130;product=thioredoxin-dependent thiol peroxidase;protein_id=WP_001068682.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 46849 47466 . + . ID=gene-AD39_RS10125;Name=hyfA;gbkey=Gene;gene=hyfA;gene_biotype=protein_coding;locus_tag=AD39_RS10125;old_locus_tag=AD39_2912 NZ_JJLH01000040.1 Protein Homology CDS 46849 47466 . + 0 ID=cds-WP_001474510.1;Parent=gene-AD39_RS10125;Dbxref=GenBank:WP_001474510.1;Name=WP_001474510.1;gbkey=CDS;gene=hyfA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708320.1;locus_tag=AD39_RS10125;product=hydrogenase 4 subunit HyfA;protein_id=WP_001474510.1;transl_table=11 NZ_JJLH01000040.1 RefSeq pseudogene 47466 49483 . + . ID=gene-AD39_RS10115;Name=hyfB;gbkey=Gene;gene=hyfB;gene_biotype=pseudogene;locus_tag=AD39_RS10115;old_locus_tag=AD39_2914;pseudo=true NZ_JJLH01000040.1 Protein Homology CDS 47466 49483 . + 0 ID=cds-AD39_RS10115;Parent=gene-AD39_RS10115;Note=frameshifted;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=hyfB;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311371.1;locus_tag=AD39_RS10115;product=hydrogenase 4 subunit B;pseudo=true;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 49494 50441 . + . ID=gene-AD39_RS10110;Name=hyfC;gbkey=Gene;gene=hyfC;gene_biotype=protein_coding;locus_tag=AD39_RS10110;old_locus_tag=AD39_2915 NZ_JJLH01000040.1 Protein Homology CDS 49494 50441 . + 0 ID=cds-WP_001299052.1;Parent=gene-AD39_RS10110;Dbxref=GenBank:WP_001299052.1;Name=WP_001299052.1;gbkey=CDS;gene=hyfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311372.2;locus_tag=AD39_RS10110;product=hydrogenase 4 subunit HyfC;protein_id=WP_001299052.1;transl_table=11 NZ_JJLH01000040.1 RefSeq pseudogene 50458 51687 . + . ID=gene-AD39_RS27385;Name=AD39_RS27385;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS27385;pseudo=true NZ_JJLH01000040.1 Protein Homology CDS 50458 51687 . + 0 ID=cds-AD39_RS27385;Parent=gene-AD39_RS27385;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708322.1;locus_tag=AD39_RS27385;product=hydrogenase 4 subunit D;pseudo=true;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 51699 52349 . + . ID=gene-AD39_RS10100;Name=hyfE;gbkey=Gene;gene=hyfE;gene_biotype=protein_coding;locus_tag=AD39_RS10100;old_locus_tag=AD39_2919 NZ_JJLH01000040.1 Protein Homology CDS 51699 52349 . + 0 ID=cds-WP_000147987.1;Parent=gene-AD39_RS10100;Dbxref=GenBank:WP_000147987.1;Name=WP_000147987.1;gbkey=CDS;gene=hyfE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311374.1;locus_tag=AD39_RS10100;product=hydrogenase 4 membrane subunit;protein_id=WP_000147987.1;transl_table=11 NZ_JJLH01000040.1 RefSeq pseudogene 52354 53939 . + . ID=gene-AD39_RS0124930;Name=hyfF;gbkey=Gene;gene=hyfF;gene_biotype=pseudogene;locus_tag=AD39_RS0124930;pseudo=true NZ_JJLH01000040.1 Protein Homology CDS 52354 53939 . + 0 ID=cds-AD39_RS0124930;Parent=gene-AD39_RS0124930;Note=frameshifted%3B internal stop;gbkey=CDS;gene=hyfF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708324.1;locus_tag=AD39_RS0124930;product=hydrogenase 4 subunit F;pseudo=true;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 53929 55644 . + . ID=gene-AD39_RS10095;Name=hyfG;gbkey=Gene;gene=hyfG;gene_biotype=protein_coding;locus_tag=AD39_RS10095;old_locus_tag=AD39_2923 NZ_JJLH01000040.1 Protein Homology CDS 53929 55644 . + 0 ID=cds-WP_001102303.1;Parent=gene-AD39_RS10095;Dbxref=GenBank:WP_001102303.1;Name=WP_001102303.1;gbkey=CDS;gene=hyfG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416982.1;locus_tag=AD39_RS10095;product=hydrogenase 4 catalytic subunit HyfG;protein_id=WP_001102303.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 55654 56199 . + . ID=gene-AD39_RS10090;Name=hyfH;gbkey=Gene;gene=hyfH;gene_biotype=protein_coding;locus_tag=AD39_RS10090;old_locus_tag=AD39_2924 NZ_JJLH01000040.1 Protein Homology CDS 55654 56199 . + 0 ID=cds-WP_000916051.1;Parent=gene-AD39_RS10090;Dbxref=GenBank:WP_000916051.1;Name=WP_000916051.1;gbkey=CDS;gene=hyfH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311377.1;locus_tag=AD39_RS10090;product=hydrogenase 4 subunit H;protein_id=WP_000916051.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 56196 56954 . + . ID=gene-AD39_RS10085;Name=hyfI;gbkey=Gene;gene=hyfI;gene_biotype=protein_coding;locus_tag=AD39_RS10085;old_locus_tag=AD39_2925 NZ_JJLH01000040.1 Protein Homology CDS 56196 56954 . + 0 ID=cds-WP_000075542.1;Parent=gene-AD39_RS10085;Dbxref=GenBank:WP_000075542.1;Name=WP_000075542.1;gbkey=CDS;gene=hyfI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000075566.1;locus_tag=AD39_RS10085;product=hydrogenase 4 catalytic subunit HyfI;protein_id=WP_000075542.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 56947 57360 . + . ID=gene-AD39_RS10080;Name=hyfJ;gbkey=Gene;gene=hyfJ;gene_biotype=protein_coding;locus_tag=AD39_RS10080;old_locus_tag=AD39_2926 NZ_JJLH01000040.1 Protein Homology CDS 56947 57360 . + 0 ID=cds-WP_032141993.1;Parent=gene-AD39_RS10080;Dbxref=GenBank:WP_032141993.1;Name=WP_032141993.1;gbkey=CDS;gene=hyfJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416985.4;locus_tag=AD39_RS10080;product=hydrogenase 4 assembly chaperone HyfJ;protein_id=WP_032141993.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 57390 59402 . + . ID=gene-AD39_RS0124935;Name=hyfR;gbkey=Gene;gene=hyfR;gene_biotype=protein_coding;locus_tag=AD39_RS0124935;old_locus_tag=AD39_2927 NZ_JJLH01000040.1 Protein Homology CDS 57390 59402 . + 0 ID=cds-WP_001581365.1;Parent=gene-AD39_RS0124935;Dbxref=GenBank:WP_001581365.1;Name=WP_001581365.1;gbkey=CDS;gene=hyfR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311380.2;locus_tag=AD39_RS0124935;product=DNA-binding transcriptional regulator HyfR;protein_id=WP_001581365.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 59424 60272 . + . ID=gene-AD39_RS10075;Name=focB;gbkey=Gene;gene=focB;gene_biotype=protein_coding;locus_tag=AD39_RS10075;old_locus_tag=AD39_2928 NZ_JJLH01000040.1 Protein Homology CDS 59424 60272 . + 0 ID=cds-WP_001244727.1;Parent=gene-AD39_RS10075;Dbxref=GenBank:WP_001244727.1;Name=WP_001244727.1;gbkey=CDS;gene=focB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416987.1;locus_tag=AD39_RS10075;product=formate transporter FocB;protein_id=WP_001244727.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 60310 61371 . - . ID=gene-AD39_RS10070;Name=yfgO;gbkey=Gene;gene=yfgO;gene_biotype=protein_coding;locus_tag=AD39_RS10070;old_locus_tag=AD39_2929 NZ_JJLH01000040.1 Protein Homology CDS 60310 61371 . - 0 ID=cds-WP_000892044.1;Parent=gene-AD39_RS10070;Dbxref=GenBank:WP_000892044.1;Name=WP_000892044.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=yfgO;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311382.1;locus_tag=AD39_RS10070;product=AI-2E family transporter;protein_id=WP_000892044.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 61584 63047 . + . ID=gene-AD39_RS10065;Name=bepA;gbkey=Gene;gene=bepA;gene_biotype=protein_coding;locus_tag=AD39_RS10065;old_locus_tag=AD39_2930 NZ_JJLH01000040.1 Protein Homology CDS 61584 63047 . + 0 ID=cds-WP_000489667.1;Parent=gene-AD39_RS10065;Dbxref=GenBank:WP_000489667.1;Name=WP_000489667.1;gbkey=CDS;gene=bepA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416989.1;locus_tag=AD39_RS10065;product=beta-barrel assembly-enhancing protease;protein_id=WP_000489667.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 63068 63427 . + . ID=gene-AD39_RS10060;Name=arsC;gbkey=Gene;gene=arsC;gene_biotype=protein_coding;locus_tag=AD39_RS10060;old_locus_tag=AD39_2931 NZ_JJLH01000040.1 Protein Homology CDS 63068 63427 . + 0 ID=cds-WP_001479457.1;Parent=gene-AD39_RS10060;Dbxref=GenBank:WP_001479457.1;Name=WP_001479457.1;Note=This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite%2C after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell%2C providing resistance.;Ontology_term=GO:0046685,GO:0008794;gbkey=CDS;gene=arsC;go_function=arsenate reductase (glutaredoxin) activity|0008794||IEA;go_process=response to arsenic-containing substance|0046685||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311384.1;locus_tag=AD39_RS10060;product=arsenate reductase (glutaredoxin);protein_id=WP_001479457.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 63565 64266 . - . ID=gene-AD39_RS10055;Name=hda;gbkey=Gene;gene=hda;gene_biotype=protein_coding;locus_tag=AD39_RS10055;old_locus_tag=AD39_2932 NZ_JJLH01000040.1 Protein Homology CDS 63565 64266 . - 0 ID=cds-WP_001307333.1;Parent=gene-AD39_RS10055;Dbxref=GenBank:WP_001307333.1;Name=WP_001307333.1;gbkey=CDS;gene=hda;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416991.2;locus_tag=AD39_RS10055;product=DnaA inactivator Hda;protein_id=WP_001307333.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 64361 65650 . - . ID=gene-AD39_RS10050;Name=uraA;gbkey=Gene;gene=uraA;gene_biotype=protein_coding;locus_tag=AD39_RS10050;old_locus_tag=AD39_2933 NZ_JJLH01000040.1 Protein Homology CDS 64361 65650 . - 0 ID=cds-WP_001506150.1;Parent=gene-AD39_RS10050;Dbxref=GenBank:WP_001506150.1;Name=WP_001506150.1;Ontology_term=GO:0022857;gbkey=CDS;gene=uraA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311386.1;locus_tag=AD39_RS10050;product=uracil permease;protein_id=WP_001506150.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 65736 66362 . - . ID=gene-AD39_RS10045;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;locus_tag=AD39_RS10045;old_locus_tag=AD39_2934 NZ_JJLH01000040.1 Protein Homology CDS 65736 66362 . - 0 ID=cds-WP_001295473.1;Parent=gene-AD39_RS10045;Dbxref=GenBank:WP_001295473.1;Name=WP_001295473.1;Ontology_term=GO:0009116,GO:0004845;gbkey=CDS;gene=upp;go_function=uracil phosphoribosyltransferase activity|0004845||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001295473.1;locus_tag=AD39_RS10045;product=uracil phosphoribosyltransferase;protein_id=WP_001295473.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 66687 67724 . + . ID=gene-AD39_RS10040;Name=purM;gbkey=Gene;gene=purM;gene_biotype=protein_coding;locus_tag=AD39_RS10040;old_locus_tag=AD39_2936 NZ_JJLH01000040.1 Protein Homology CDS 66687 67724 . + 0 ID=cds-WP_001295474.1;Parent=gene-AD39_RS10040;Dbxref=GenBank:WP_001295474.1;Name=WP_001295474.1;Ontology_term=GO:0006189,GO:0004641;gbkey=CDS;gene=purM;go_function=phosphoribosylformylglycinamidine cyclo-ligase activity|0004641||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311388.1;locus_tag=AD39_RS10040;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=WP_001295474.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 67724 68362 . + . ID=gene-AD39_RS10035;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=AD39_RS10035;old_locus_tag=AD39_2937 NZ_JJLH01000040.1 Protein Homology CDS 67724 68362 . + 0 ID=cds-WP_001028614.1;Parent=gene-AD39_RS10035;Dbxref=GenBank:WP_001028614.1;Name=WP_001028614.1;Ontology_term=GO:0006189,GO:0004644;gbkey=CDS;gene=purN;go_function=phosphoribosylglycinamide formyltransferase activity|0004644||IEA;go_process='de novo' IMP biosynthetic process|0006189||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708338.1;locus_tag=AD39_RS10035;product=phosphoribosylglycinamide formyltransferase;protein_id=WP_001028614.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 68533 70599 . + . ID=gene-AD39_RS10030;Name=ppk1;gbkey=Gene;gene=ppk1;gene_biotype=protein_coding;locus_tag=AD39_RS10030;old_locus_tag=AD39_2939 NZ_JJLH01000040.1 Protein Homology CDS 68533 70599 . + 0 ID=cds-WP_001481741.1;Parent=gene-AD39_RS10030;Dbxref=GenBank:WP_001481741.1;Name=WP_001481741.1;Ontology_term=GO:0006799,GO:0008976,GO:0009358;gbkey=CDS;gene=ppk1;go_component=polyphosphate kinase complex|0009358||IEA;go_function=polyphosphate kinase activity|0008976||IEA;go_process=polyphosphate biosynthetic process|0006799||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311390.1;locus_tag=AD39_RS10030;product=polyphosphate kinase 1;protein_id=WP_001481741.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 70604 72145 . + . ID=gene-AD39_RS10025;Name=ppx;gbkey=Gene;gene=ppx;gene_biotype=protein_coding;locus_tag=AD39_RS10025;old_locus_tag=AD39_2940 NZ_JJLH01000040.1 Protein Homology CDS 70604 72145 . + 0 ID=cds-WP_001121363.1;Parent=gene-AD39_RS10025;Dbxref=GenBank:WP_001121363.1;Name=WP_001121363.1;Ontology_term=GO:0006798,GO:0000287,GO:0004309;gbkey=CDS;gene=ppx;go_function=magnesium ion binding|0000287||IEA,exopolyphosphatase activity|0004309||IEA;go_process=polyphosphate catabolic process|0006798||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311391.1;locus_tag=AD39_RS10025;product=exopolyphosphatase;protein_id=WP_001121363.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 72184 74427 . - . ID=gene-AD39_RS10020;Name=pdeF;gbkey=Gene;gene=pdeF;gene_biotype=protein_coding;locus_tag=AD39_RS10020;old_locus_tag=AD39_2941 NZ_JJLH01000040.1 Protein Homology CDS 72184 74427 . - 0 ID=cds-WP_000772732.1;Parent=gene-AD39_RS10020;Dbxref=GenBank:WP_000772732.1;Name=WP_000772732.1;gbkey=CDS;gene=pdeF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416998.1;locus_tag=AD39_RS10020;product=cyclic-guanylate-specific phosphodiesterase PdeF;protein_id=WP_000772732.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 74609 74761 . - . ID=gene-AD39_RS29480;Name=AD39_RS29480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29480;old_locus_tag=AD39_2942 NZ_JJLH01000040.1 Protein Homology CDS 74609 74761 . - 0 ID=cds-WP_000017552.1;Parent=gene-AD39_RS29480;Dbxref=GenBank:WP_000017552.1;Name=WP_000017552.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_008439271.1;locus_tag=AD39_RS29480;product=hypothetical protein;protein_id=WP_000017552.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 74779 74970 . + . ID=gene-AD39_RS0124940;Name=yfgG;gbkey=Gene;gene=yfgG;gene_biotype=protein_coding;locus_tag=AD39_RS0124940;old_locus_tag=AD39_2943 NZ_JJLH01000040.1 Protein Homology CDS 74779 74970 . + 0 ID=cds-WP_000076001.1;Parent=gene-AD39_RS0124940;Dbxref=GenBank:WP_000076001.1;Name=WP_000076001.1;gbkey=CDS;gene=yfgG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416999.1;locus_tag=AD39_RS0124940;product=YfgG family protein;protein_id=WP_000076001.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 75281 75799 . + . ID=gene-AD39_RS10010;Name=yfgH;gbkey=Gene;gene=yfgH;gene_biotype=protein_coding;locus_tag=AD39_RS10010;old_locus_tag=AD39_2944 NZ_JJLH01000040.1 Protein Homology CDS 75281 75799 . + 0 ID=cds-WP_001317257.1;Parent=gene-AD39_RS10010;Dbxref=GenBank:WP_001317257.1;Name=WP_001317257.1;Ontology_term=GO:0019867;gbkey=CDS;gene=yfgH;go_component=outer membrane|0019867||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417000.1;locus_tag=AD39_RS10010;product=glycine zipper 2TM domain-containing protein;protein_id=WP_001317257.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 75815 76354 . + . ID=gene-AD39_RS10005;Name=yfgI;gbkey=Gene;gene=yfgI;gene_biotype=protein_coding;locus_tag=AD39_RS10005;old_locus_tag=AD39_2945 NZ_JJLH01000040.1 Protein Homology CDS 75815 76354 . + 0 ID=cds-WP_000755173.1;Parent=gene-AD39_RS10005;Dbxref=GenBank:WP_000755173.1;Name=WP_000755173.1;gbkey=CDS;gene=yfgI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417001.1;locus_tag=AD39_RS10005;product=DUF5384 family protein;protein_id=WP_000755173.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 76449 78026 . - . ID=gene-AD39_RS10000;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=AD39_RS10000;old_locus_tag=AD39_2946 NZ_JJLH01000040.1 Protein Homology CDS 76449 78026 . - 0 ID=cds-WP_000138282.1;Parent=gene-AD39_RS10000;Dbxref=GenBank:WP_000138282.1;Name=WP_000138282.1;Ontology_term=GO:0006177,GO:0003922,GO:0005524,GO:0016462;gbkey=CDS;gene=guaA;go_function=GMP synthase (glutamine-hydrolyzing) activity|0003922||IEA,ATP binding|0005524||IEA,pyrophosphatase activity|0016462||IEA;go_process=GMP biosynthetic process|0006177||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130181.1;locus_tag=AD39_RS10000;product=glutamine-hydrolyzing GMP synthase;protein_id=WP_000138282.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 78095 79561 . - . ID=gene-AD39_RS09995;Name=guaB;gbkey=Gene;gene=guaB;gene_biotype=protein_coding;locus_tag=AD39_RS09995;old_locus_tag=AD39_2947 NZ_JJLH01000040.1 Protein Homology CDS 78095 79561 . - 0 ID=cds-WP_001299507.1;Parent=gene-AD39_RS09995;Dbxref=GenBank:WP_001299507.1;Name=WP_001299507.1;Ontology_term=GO:0006164,GO:0003938;gbkey=CDS;gene=guaB;go_function=IMP dehydrogenase activity|0003938||IEA;go_process=purine nucleotide biosynthetic process|0006164||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004151980.1;locus_tag=AD39_RS09995;product=IMP dehydrogenase;protein_id=WP_001299507.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 79723 81093 . + . ID=gene-AD39_RS09990;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=AD39_RS09990;old_locus_tag=AD39_2948 NZ_JJLH01000040.1 Protein Homology CDS 79723 81093 . + 0 ID=cds-WP_000937931.1;Parent=gene-AD39_RS09990;Dbxref=GenBank:WP_000937931.1;Name=WP_000937931.1;Ontology_term=GO:0006308,GO:0008855,GO:0009318;gbkey=CDS;gene=xseA;go_component=exodeoxyribonuclease VII complex|0009318||IEA;go_function=exodeoxyribonuclease VII activity|0008855||IEA;go_process=DNA catabolic process|0006308||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417004.1;locus_tag=AD39_RS09990;product=exodeoxyribonuclease VII large subunit;protein_id=WP_000937931.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 81090 81305 . - . ID=gene-AD39_RS09985;Name=yfgJ;gbkey=Gene;gene=yfgJ;gene_biotype=protein_coding;locus_tag=AD39_RS09985;old_locus_tag=AD39_2949 NZ_JJLH01000040.1 Protein Homology CDS 81090 81305 . - 0 ID=cds-WP_001330936.1;Parent=gene-AD39_RS09985;Dbxref=GenBank:WP_001330936.1;Name=WP_001330936.1;gbkey=CDS;gene=yfgJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311399.1;locus_tag=AD39_RS09985;product=zinc ribbon domain-containing protein;protein_id=WP_001330936.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 81374 82846 . - . ID=gene-AD39_RS09980;Name=der;gbkey=Gene;gene=der;gene_biotype=protein_coding;locus_tag=AD39_RS09980;old_locus_tag=AD39_2950 NZ_JJLH01000040.1 Protein Homology CDS 81374 82846 . - 0 ID=cds-WP_000249410.1;Parent=gene-AD39_RS09980;Dbxref=GenBank:WP_000249410.1;Name=WP_000249410.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=der;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417006.2;locus_tag=AD39_RS09980;product=ribosome biogenesis GTPase Der;protein_id=WP_000249410.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 82964 84142 . - . ID=gene-AD39_RS09975;Name=bamB;gbkey=Gene;gene=bamB;gene_biotype=protein_coding;locus_tag=AD39_RS09975;old_locus_tag=AD39_2951 NZ_JJLH01000040.1 Protein Homology CDS 82964 84142 . - 0 ID=cds-WP_001177043.1;Parent=gene-AD39_RS09975;Dbxref=GenBank:WP_001177043.1;Name=WP_001177043.1;Ontology_term=GO:0005515;gbkey=CDS;gene=bamB;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708351.1;locus_tag=AD39_RS09975;product=outer membrane protein assembly factor BamB;protein_id=WP_001177043.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 84153 84773 . - . ID=gene-AD39_RS09970;Name=yfgM;gbkey=Gene;gene=yfgM;gene_biotype=protein_coding;locus_tag=AD39_RS09970;old_locus_tag=AD39_2952 NZ_JJLH01000040.1 Protein Homology CDS 84153 84773 . - 0 ID=cds-WP_000409205.1;Parent=gene-AD39_RS09970;Dbxref=GenBank:WP_000409205.1;Name=WP_000409205.1;gbkey=CDS;gene=yfgM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417008.1;locus_tag=AD39_RS09970;product=ancillary SecYEG translocon subunit YfgM;protein_id=WP_000409205.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 84791 86065 . - . ID=gene-AD39_RS09965;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=AD39_RS09965;old_locus_tag=AD39_2953 NZ_JJLH01000040.1 Protein Homology CDS 84791 86065 . - 0 ID=cds-WP_001107180.1;Parent=gene-AD39_RS09965;Dbxref=GenBank:WP_001107180.1;Name=WP_001107180.1;Ontology_term=GO:0006427,GO:0004821,GO:0005524,GO:0005737;gbkey=CDS;gene=hisS;go_component=cytoplasm|0005737||IEA;go_function=histidine-tRNA ligase activity|0004821||IEA,ATP binding|0005524||IEA;go_process=histidyl-tRNA aminoacylation|0006427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311403.1;locus_tag=AD39_RS09965;product=histidine--tRNA ligase;protein_id=WP_001107180.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 86176 87294 . - . ID=gene-AD39_RS09960;Name=ispG;gbkey=Gene;gene=ispG;gene_biotype=protein_coding;gene_synonym=gcpE;locus_tag=AD39_RS09960;old_locus_tag=AD39_2954 NZ_JJLH01000040.1 Protein Homology CDS 86176 87294 . - 0 ID=cds-WP_000551807.1;Parent=gene-AD39_RS09960;Dbxref=GenBank:WP_000551807.1;Name=WP_000551807.1;Ontology_term=GO:0008152,GO:0046429;gbkey=CDS;gene=ispG;go_function=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (ferredoxin)|0046429||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311404.1;locus_tag=AD39_RS09960;product=flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase;protein_id=WP_000551807.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 87321 88334 . - . ID=gene-AD39_RS09955;Name=rodZ;gbkey=Gene;gene=rodZ;gene_biotype=protein_coding;locus_tag=AD39_RS09955;old_locus_tag=AD39_2955 NZ_JJLH01000040.1 Protein Homology CDS 87321 88334 . - 0 ID=cds-WP_032287598.1;Parent=gene-AD39_RS09955;Dbxref=GenBank:WP_032287598.1;Name=WP_032287598.1;Ontology_term=GO:0008360,GO:0003677,GO:0016020;gbkey=CDS;gene=rodZ;go_component=membrane|0016020||IEA;go_function=DNA binding|0003677||IEA;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708355.1;locus_tag=AD39_RS09955;product=cytoskeleton protein RodZ;protein_id=WP_032287598.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 88619 89773 . - . ID=gene-AD39_RS09950;Name=rlmN;gbkey=Gene;gene=rlmN;gene_biotype=protein_coding;locus_tag=AD39_RS09950;old_locus_tag=AD39_2956 NZ_JJLH01000040.1 Protein Homology CDS 88619 89773 . - 0 ID=cds-WP_000003317.1;Parent=gene-AD39_RS09950;Dbxref=GenBank:WP_000003317.1;Name=WP_000003317.1;gbkey=CDS;gene=rlmN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417012.1;locus_tag=AD39_RS09950;product=bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN;protein_id=WP_000003317.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 89923 90354 . - . ID=gene-AD39_RS09945;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=AD39_RS09945;old_locus_tag=AD39_2957 NZ_JJLH01000040.1 Protein Homology CDS 89923 90354 . - 0 ID=cds-WP_000963837.1;Parent=gene-AD39_RS09945;Dbxref=GenBank:WP_000963837.1;Name=WP_000963837.1;Ontology_term=GO:0004550;gbkey=CDS;gene=ndk;go_function=nucleoside diphosphate kinase activity|0004550||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311407.1;locus_tag=AD39_RS09945;product=nucleoside-diphosphate kinase;protein_id=WP_000963837.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 90503 92815 . - . ID=gene-AD39_RS09940;Name=pbpC;gbkey=Gene;gene=pbpC;gene_biotype=protein_coding;locus_tag=AD39_RS09940;old_locus_tag=AD39_2958 NZ_JJLH01000040.1 Protein Homology CDS 90503 92815 . - 0 ID=cds-WP_001544017.1;Parent=gene-AD39_RS09940;Dbxref=GenBank:WP_001544017.1;Name=WP_001544017.1;Note=penicillin-binding protein 1C;Ontology_term=GO:0009252,GO:0008658,GO:0008955;gbkey=CDS;gene=pbpC;go_function=penicillin binding|0008658||IEA,peptidoglycan glycosyltransferase activity|0008955||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417014.1;locus_tag=AD39_RS09940;product=peptidoglycan glycosyltransferase PbpC;protein_id=WP_001544017.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 92816 97774 . - . ID=gene-AD39_RS09935;Name=yfhM;gbkey=Gene;gene=yfhM;gene_biotype=protein_coding;locus_tag=AD39_RS09935;old_locus_tag=AD39_2959 NZ_JJLH01000040.1 Protein Homology CDS 92816 97774 . - 0 ID=cds-WP_032283658.1;Parent=gene-AD39_RS09935;Dbxref=GenBank:WP_032283658.1;Name=WP_032283658.1;gbkey=CDS;gene=yfhM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417015.1;locus_tag=AD39_RS09935;product=alpha2-macroglobulin;protein_id=WP_032283658.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 97981 98826 . + . ID=gene-AD39_RS09930;Name=sseA;gbkey=Gene;gene=sseA;gene_biotype=protein_coding;locus_tag=AD39_RS09930;old_locus_tag=AD39_2960 NZ_JJLH01000040.1 Protein Homology CDS 97981 98826 . + 0 ID=cds-WP_000108626.1;Parent=gene-AD39_RS09930;Dbxref=GenBank:WP_000108626.1;Name=WP_000108626.1;Ontology_term=GO:0004792;gbkey=CDS;gene=sseA;go_function=thiosulfate-cyanide sulfurtransferase activity|0004792||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417016.4;locus_tag=AD39_RS09930;product=3-mercaptopyruvate sulfurtransferase;protein_id=WP_000108626.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 99488 99613 . + . ID=gene-AD39_RS29770;Name=timP;gbkey=Gene;gene=timP;gene_biotype=protein_coding;locus_tag=AD39_RS29770;old_locus_tag=AD39_2962 NZ_JJLH01000040.1 Protein Homology CDS 99488 99613 . + 0 ID=cds-WP_001380605.1;Parent=gene-AD39_RS29770;Dbxref=GenBank:WP_001380605.1;Name=WP_001380605.1;gbkey=CDS;gene=timP;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010283914.1;locus_tag=AD39_RS29770;product=small toxic inner membrane protein TimP;protein_id=WP_001380605.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 99644 100420 . - . ID=gene-AD39_RS09925;Name=sseB;gbkey=Gene;gene=sseB;gene_biotype=protein_coding;locus_tag=AD39_RS09925;old_locus_tag=AD39_2963 NZ_JJLH01000040.1 Protein Homology CDS 99644 100420 . - 0 ID=cds-WP_001402404.1;Parent=gene-AD39_RS09925;Dbxref=GenBank:WP_001402404.1;Name=WP_001402404.1;gbkey=CDS;gene=sseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708361.2;locus_tag=AD39_RS09925;product=enhanced serine sensitivity protein SseB;protein_id=WP_001402404.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 100562 101845 . - . ID=gene-AD39_RS09920;Name=pepB;gbkey=Gene;gene=pepB;gene_biotype=protein_coding;locus_tag=AD39_RS09920;old_locus_tag=AD39_2964 NZ_JJLH01000040.1 Protein Homology CDS 100562 101845 . - 0 ID=cds-WP_001402405.1;Parent=gene-AD39_RS09920;Dbxref=GenBank:WP_001402405.1;Name=WP_001402405.1;Ontology_term=GO:0006508,GO:0019538,GO:0030145,GO:0070006;gbkey=CDS;gene=pepB;go_function=manganese ion binding|0030145||IEA,metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA,protein metabolic process|0019538||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417018.4;locus_tag=AD39_RS09920;product=aminopeptidase PepB;protein_id=WP_001402405.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 101903 102103 . - . ID=gene-AD39_RS09915;Name=iscX;gbkey=Gene;gene=iscX;gene_biotype=protein_coding;locus_tag=AD39_RS09915;old_locus_tag=AD39_2965 NZ_JJLH01000040.1 Protein Homology CDS 101903 102103 . - 0 ID=cds-WP_000523616.1;Parent=gene-AD39_RS09915;Dbxref=GenBank:WP_000523616.1;Name=WP_000523616.1;Ontology_term=GO:0016226,GO:0005506;gbkey=CDS;gene=iscX;go_function=iron ion binding|0005506||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004104502.1;locus_tag=AD39_RS09915;product=Fe-S cluster assembly protein IscX;protein_id=WP_000523616.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 102115 102450 . - . ID=gene-AD39_RS09910;Name=fdx;gbkey=Gene;gene=fdx;gene_biotype=protein_coding;locus_tag=AD39_RS09910;old_locus_tag=AD39_2966 NZ_JJLH01000040.1 Protein Homology CDS 102115 102450 . - 0 ID=cds-WP_001124469.1;Parent=gene-AD39_RS09910;Dbxref=GenBank:WP_001124469.1;Name=WP_001124469.1;Ontology_term=GO:0016226,GO:0009055,GO:0051537;gbkey=CDS;gene=fdx;go_function=electron transfer activity|0009055||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015683702.1;locus_tag=AD39_RS09910;product=ISC system 2Fe-2S type ferredoxin;protein_id=WP_001124469.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 102452 104302 . - . ID=gene-AD39_RS09905;Name=hscA;gbkey=Gene;gene=hscA;gene_biotype=protein_coding;locus_tag=AD39_RS09905;old_locus_tag=AD39_2967 NZ_JJLH01000040.1 Protein Homology CDS 102452 104302 . - 0 ID=cds-WP_001196613.1;Parent=gene-AD39_RS09905;Dbxref=GenBank:WP_001196613.1;Name=WP_001196613.1;Ontology_term=GO:0006457,GO:0016226,GO:0005515,GO:0005524,GO:0016887;gbkey=CDS;gene=hscA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=protein folding|0006457||IEA,iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001559634.1;locus_tag=AD39_RS09905;product=Fe-S protein assembly chaperone HscA;protein_id=WP_001196613.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 104319 104834 . - . ID=gene-AD39_RS09900;Name=hscB;gbkey=Gene;gene=hscB;gene_biotype=protein_coding;locus_tag=AD39_RS09900;old_locus_tag=AD39_2968 NZ_JJLH01000040.1 Protein Homology CDS 104319 104834 . - 0 ID=cds-WP_000384411.1;Parent=gene-AD39_RS09900;Dbxref=GenBank:WP_000384411.1;Name=WP_000384411.1;Ontology_term=GO:0051604,GO:0051087;gbkey=CDS;gene=hscB;go_function=protein-folding chaperone binding|0051087||IEA;go_process=protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311420.1;locus_tag=AD39_RS09900;product=co-chaperone HscB;protein_id=WP_000384411.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 104930 105253 . - . ID=gene-AD39_RS09895;Name=iscA;gbkey=Gene;gene=iscA;gene_biotype=protein_coding;locus_tag=AD39_RS09895;old_locus_tag=AD39_2970 NZ_JJLH01000040.1 Protein Homology CDS 104930 105253 . - 0 ID=cds-WP_000028953.1;Parent=gene-AD39_RS09895;Dbxref=GenBank:WP_000028953.1;Name=WP_000028953.1;gbkey=CDS;gene=iscA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311421.1;locus_tag=AD39_RS09895;product=iron-sulfur cluster assembly protein IscA;protein_id=WP_000028953.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 105270 105656 . - . ID=gene-AD39_RS09890;Name=iscU;gbkey=Gene;gene=iscU;gene_biotype=protein_coding;locus_tag=AD39_RS09890;old_locus_tag=AD39_2971 NZ_JJLH01000040.1 Protein Homology CDS 105270 105656 . - 0 ID=cds-WP_000331707.1;Parent=gene-AD39_RS09890;Dbxref=GenBank:WP_000331707.1;Name=WP_000331707.1;Ontology_term=GO:0016226,GO:0005198,GO:0005506,GO:0051536;gbkey=CDS;gene=iscU;go_function=structural molecule activity|0005198||IEA,iron ion binding|0005506||IEA,iron-sulfur cluster binding|0051536||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000331707.1;locus_tag=AD39_RS09890;product=Fe-S cluster assembly scaffold IscU;protein_id=WP_000331707.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 105684 106898 . - . ID=gene-AD39_RS09885;Name=iscS;gbkey=Gene;gene=iscS;gene_biotype=protein_coding;locus_tag=AD39_RS09885;old_locus_tag=AD39_2972 NZ_JJLH01000040.1 Protein Homology CDS 105684 106898 . - 0 ID=cds-WP_001295373.1;Parent=gene-AD39_RS09885;Dbxref=GenBank:WP_001295373.1;Name=WP_001295373.1;gbkey=CDS;gene=iscS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017459011.1;locus_tag=AD39_RS09885;product=cysteine desulfurase;protein_id=WP_001295373.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 107139 107627 . - . ID=gene-AD39_RS09880;Name=iscR;gbkey=Gene;gene=iscR;gene_biotype=protein_coding;locus_tag=AD39_RS09880;old_locus_tag=AD39_2973 NZ_JJLH01000040.1 Protein Homology CDS 107139 107627 . - 0 ID=cds-WP_001241356.1;Parent=gene-AD39_RS09880;Dbxref=GenBank:WP_001241356.1;Name=WP_001241356.1;gbkey=CDS;gene=iscR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002913993.1;locus_tag=AD39_RS09880;product=Fe-S cluster assembly transcriptional regulator IscR;protein_id=WP_001241356.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 107928 108665 . - . ID=gene-AD39_RS09875;Name=trmJ;gbkey=Gene;gene=trmJ;gene_biotype=protein_coding;locus_tag=AD39_RS09875;old_locus_tag=AD39_2974 NZ_JJLH01000040.1 Protein Homology CDS 107928 108665 . - 0 ID=cds-WP_000940018.1;Parent=gene-AD39_RS09875;Dbxref=GenBank:WP_000940018.1;Name=WP_000940018.1;Ontology_term=GO:0006396,GO:0003723,GO:0008173;gbkey=CDS;gene=trmJ;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311425.1;locus_tag=AD39_RS09875;product=tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ;protein_id=WP_000940018.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 108784 109587 . + . ID=gene-AD39_RS09870;Name=suhB;gbkey=Gene;gene=suhB;gene_biotype=protein_coding;locus_tag=AD39_RS09870;old_locus_tag=AD39_2975 NZ_JJLH01000040.1 Protein Homology CDS 108784 109587 . + 0 ID=cds-WP_000553451.1;Parent=gene-AD39_RS09870;Dbxref=GenBank:WP_000553451.1;Name=WP_000553451.1;Ontology_term=GO:0046854,GO:0008934;gbkey=CDS;gene=suhB;go_function=inositol monophosphate 1-phosphatase activity|0008934||IEA;go_process=phosphatidylinositol phosphate biosynthetic process|0046854||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000553460.1;locus_tag=AD39_RS09870;product=inositol-1-monophosphatase;protein_id=WP_000553451.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 109732 110586 . + . ID=gene-AD39_RS09865;Name=yfhR;gbkey=Gene;gene=yfhR;gene_biotype=protein_coding;locus_tag=AD39_RS09865;old_locus_tag=AD39_2976 NZ_JJLH01000040.1 Protein Homology CDS 109732 110586 . + 0 ID=cds-WP_001299515.1;Parent=gene-AD39_RS09865;Dbxref=GenBank:WP_001299515.1;Name=WP_001299515.1;Ontology_term=GO:0016787;gbkey=CDS;gene=yfhR;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311427.2;locus_tag=AD39_RS09865;product=alpha/beta hydrolase;protein_id=WP_001299515.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 110777 112057 . + . ID=gene-AD39_RS09860;Name=csiE;gbkey=Gene;gene=csiE;gene_biotype=protein_coding;locus_tag=AD39_RS09860;old_locus_tag=AD39_2977 NZ_JJLH01000040.1 Protein Homology CDS 110777 112057 . + 0 ID=cds-WP_000983008.1;Parent=gene-AD39_RS09860;Dbxref=GenBank:WP_000983008.1;Name=WP_000983008.1;gbkey=CDS;gene=csiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417030.2;locus_tag=AD39_RS09860;product=stationary phase inducible protein CsiE;protein_id=WP_000983008.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 112049 113188 . - . ID=gene-AD39_RS09855;Name=hcaT;gbkey=Gene;gene=hcaT;gene_biotype=protein_coding;locus_tag=AD39_RS09855;old_locus_tag=AD39_2978 NZ_JJLH01000040.1 Protein Homology CDS 112049 113188 . - 0 ID=cds-WP_000244193.1;Parent=gene-AD39_RS09855;Dbxref=GenBank:WP_000244193.1;Name=WP_000244193.1;gbkey=CDS;gene=hcaT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417031.1;locus_tag=AD39_RS09855;product=3-phenylpropionate MFS transporter;protein_id=WP_000244193.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 113348 114238 . - . ID=gene-AD39_RS09850;Name=hcaR;gbkey=Gene;gene=hcaR;gene_biotype=protein_coding;locus_tag=AD39_RS09850;old_locus_tag=AD39_2979 NZ_JJLH01000040.1 Protein Homology CDS 113348 114238 . - 0 ID=cds-WP_000423257.1;Parent=gene-AD39_RS09850;Dbxref=GenBank:WP_000423257.1;Name=WP_000423257.1;gbkey=CDS;gene=hcaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311430.1;locus_tag=AD39_RS09850;product=DNA-binding transcriptional regulator HcaR;protein_id=WP_000423257.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 114374 115735 . + . ID=gene-AD39_RS09845;Name=hcaE;gbkey=Gene;gene=hcaE;gene_biotype=protein_coding;locus_tag=AD39_RS09845;old_locus_tag=AD39_2980 NZ_JJLH01000040.1 Protein Homology CDS 114374 115735 . + 0 ID=cds-WP_000211172.1;Parent=gene-AD39_RS09845;Dbxref=GenBank:WP_000211172.1;Name=WP_000211172.1;Ontology_term=GO:0019380,GO:0008695;gbkey=CDS;gene=hcaE;go_function=3-phenylpropionate dioxygenase activity|0008695||IEA;go_process=3-phenylpropionate catabolic process|0019380||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311431.1;locus_tag=AD39_RS09845;product=3-phenylpropionate/cinnamic acid dioxygenase subunit alpha;protein_id=WP_000211172.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 115732 116250 . + . ID=gene-AD39_RS09840;Name=hcaF;gbkey=Gene;gene=hcaF;gene_biotype=protein_coding;locus_tag=AD39_RS09840;old_locus_tag=AD39_2981 NZ_JJLH01000040.1 Protein Homology CDS 115732 116250 . + 0 ID=cds-WP_001374469.1;Parent=gene-AD39_RS09840;Dbxref=GenBank:WP_001374469.1;Name=WP_001374469.1;Ontology_term=GO:0019380,GO:0008695;gbkey=CDS;gene=hcaF;go_function=3-phenylpropionate dioxygenase activity|0008695||IEA;go_process=3-phenylpropionate catabolic process|0019380||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417034.1;locus_tag=AD39_RS09840;product=3-phenylpropionate/cinnamic acid dioxygenase subunit beta;protein_id=WP_001374469.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 116250 116570 . + . ID=gene-AD39_RS09835;Name=hcaC;gbkey=Gene;gene=hcaC;gene_biotype=protein_coding;locus_tag=AD39_RS09835;old_locus_tag=AD39_2982 NZ_JJLH01000040.1 Protein Homology CDS 116250 116570 . + 0 ID=cds-WP_001080102.1;Parent=gene-AD39_RS09835;Dbxref=GenBank:WP_001080102.1;Name=WP_001080102.1;Ontology_term=GO:0051537;gbkey=CDS;gene=hcaC;go_function=2 iron%2C 2 sulfur cluster binding|0051537||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311433.1;locus_tag=AD39_RS09835;product=bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit;protein_id=WP_001080102.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 116567 117379 . + . ID=gene-AD39_RS09830;Name=hcaB;gbkey=Gene;gene=hcaB;gene_biotype=protein_coding;gene_synonym=phdD,yfhX;locus_tag=AD39_RS09830;old_locus_tag=AD39_2983 NZ_JJLH01000040.1 Protein Homology CDS 116567 117379 . + 0 ID=cds-WP_001281377.1;Parent=gene-AD39_RS09830;Dbxref=GenBank:WP_001281377.1;Name=WP_001281377.1;gbkey=CDS;gene=hcaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311434.1;locus_tag=AD39_RS09830;product=3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase;protein_id=WP_001281377.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 117389 118591 . + . ID=gene-AD39_RS09825;Name=hcaD;gbkey=Gene;gene=hcaD;gene_biotype=protein_coding;locus_tag=AD39_RS09825;old_locus_tag=AD39_2984 NZ_JJLH01000040.1 Protein Homology CDS 117389 118591 . + 0 ID=cds-WP_000660797.1;Parent=gene-AD39_RS09825;Dbxref=GenBank:WP_000660797.1;Name=WP_000660797.1;gbkey=CDS;gene=hcaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417037.1;locus_tag=AD39_RS09825;product=phenylpropionate dioxygenase ferredoxin reductase subunit;protein_id=WP_000660797.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 118688 119110 . + . ID=gene-AD39_RS09820;Name=yphA;gbkey=Gene;gene=yphA;gene_biotype=protein_coding;locus_tag=AD39_RS09820;old_locus_tag=AD39_2985 NZ_JJLH01000040.1 Protein Homology CDS 118688 119110 . + 0 ID=cds-WP_001094726.1;Parent=gene-AD39_RS09820;Dbxref=GenBank:WP_001094726.1;Name=WP_001094726.1;Ontology_term=GO:0005886;gbkey=CDS;gene=yphA;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417038.4;locus_tag=AD39_RS09820;product=DoxX family protein;protein_id=WP_001094726.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 119158 120030 . - . ID=gene-AD39_RS09815;Name=yphB;gbkey=Gene;gene=yphB;gene_biotype=protein_coding;locus_tag=AD39_RS09815;old_locus_tag=AD39_2986 NZ_JJLH01000040.1 Protein Homology CDS 119158 120030 . - 0 ID=cds-WP_000158547.1;Parent=gene-AD39_RS09815;Dbxref=GenBank:WP_000158547.1;Name=WP_000158547.1;gbkey=CDS;gene=yphB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417039.1;locus_tag=AD39_RS09815;product=aldose 1-epimerase;protein_id=WP_000158547.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 120042 121136 . - . ID=gene-AD39_RS09810;Name=yphC;gbkey=Gene;gene=yphC;gene_biotype=protein_coding;locus_tag=AD39_RS09810;old_locus_tag=AD39_2987 NZ_JJLH01000040.1 Protein Homology CDS 120042 121136 . - 0 ID=cds-WP_187439600.1;Parent=gene-AD39_RS09810;Dbxref=GenBank:WP_187439600.1;Name=WP_187439600.1;Ontology_term=GO:0008270,GO:0016491,GO:0030554;gbkey=CDS;gene=yphC;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity|0016491||IEA,adenyl nucleotide binding|0030554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708383.1;locus_tag=AD39_RS09810;product=zinc-dependent alcohol dehydrogenase family protein;protein_id=WP_187439600.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 121169 122167 . - . ID=gene-AD39_RS09805;Name=yphD;gbkey=Gene;gene=yphD;gene_biotype=protein_coding;locus_tag=AD39_RS09805;old_locus_tag=AD39_2988 NZ_JJLH01000040.1 Protein Homology CDS 121169 122167 . - 0 ID=cds-WP_001276664.1;Parent=gene-AD39_RS09805;Dbxref=GenBank:WP_001276664.1;Name=WP_001276664.1;Ontology_term=GO:0042626,GO:0140359;gbkey=CDS;gene=yphD;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311439.1;locus_tag=AD39_RS09805;product=ABC transporter permease;protein_id=WP_001276664.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 122192 123703 . - . ID=gene-AD39_RS09800;Name=yphE;gbkey=Gene;gene=yphE;gene_biotype=protein_coding;locus_tag=AD39_RS09800;old_locus_tag=AD39_2989 NZ_JJLH01000040.1 Protein Homology CDS 122192 123703 . - 0 ID=cds-WP_000493471.1;Parent=gene-AD39_RS09800;Dbxref=GenBank:WP_000493471.1;Name=WP_000493471.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;gene=yphE;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417042.1;locus_tag=AD39_RS09800;product=sugar ABC transporter ATP-binding protein;protein_id=WP_000493471.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 123726 124709 . - . ID=gene-AD39_RS09795;Name=yphF;gbkey=Gene;gene=yphF;gene_biotype=protein_coding;locus_tag=AD39_RS09795;old_locus_tag=AD39_2990 NZ_JJLH01000040.1 Protein Homology CDS 123726 124709 . - 0 ID=cds-WP_001124908.1;Parent=gene-AD39_RS09795;Dbxref=GenBank:WP_001124908.1;Name=WP_001124908.1;gbkey=CDS;gene=yphF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311441.1;locus_tag=AD39_RS09795;product=substrate-binding domain-containing protein;protein_id=WP_001124908.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 124806 128087 . - . ID=gene-AD39_RS09790;Name=yphG;gbkey=Gene;gene=yphG;gene_biotype=protein_coding;locus_tag=AD39_RS09790;old_locus_tag=AD39_2991 NZ_JJLH01000040.1 Protein Homology CDS 124806 128087 . - 0 ID=cds-WP_032287599.1;Parent=gene-AD39_RS09790;Dbxref=GenBank:WP_032287599.1;Name=WP_032287599.1;gbkey=CDS;gene=yphG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417044.4;locus_tag=AD39_RS09790;product=DUF5107 domain-containing protein;protein_id=WP_032287599.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 128205 129398 . + . ID=gene-AD39_RS09785;Name=yphH;gbkey=Gene;gene=yphH;gene_biotype=protein_coding;locus_tag=AD39_RS09785;old_locus_tag=AD39_2992 NZ_JJLH01000040.1 Protein Homology CDS 128205 129398 . + 0 ID=cds-WP_001299519.1;Parent=gene-AD39_RS09785;Dbxref=GenBank:WP_001299519.1;Name=WP_001299519.1;gbkey=CDS;gene=yphH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311443.2;locus_tag=AD39_RS09785;product=ROK family protein;protein_id=WP_001299519.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 129462 130715 . - . ID=gene-AD39_RS09780;Name=glyA;gbkey=Gene;gene=glyA;gene_biotype=protein_coding;locus_tag=AD39_RS09780;old_locus_tag=AD39_2993 NZ_JJLH01000040.1 Protein Homology CDS 129462 130715 . - 0 ID=cds-WP_000919159.1;Parent=gene-AD39_RS09780;Dbxref=GenBank:WP_000919159.1;Name=WP_000919159.1;gbkey=CDS;gene=glyA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019077397.1;locus_tag=AD39_RS09780;product=serine hydroxymethyltransferase;protein_id=WP_000919159.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 131043 132233 . + . ID=gene-AD39_RS09775;Name=hmpA;gbkey=Gene;gene=hmpA;gene_biotype=protein_coding;locus_tag=AD39_RS09775;old_locus_tag=AD39_2995 NZ_JJLH01000040.1 Protein Homology CDS 131043 132233 . + 0 ID=cds-WP_000883124.1;Parent=gene-AD39_RS09775;Dbxref=GenBank:WP_000883124.1;Name=WP_000883124.1;Ontology_term=GO:0051409,GO:0008941,GO:0019825,GO:0020037,GO:0071949;gbkey=CDS;gene=hmpA;go_function=nitric oxide dioxygenase NAD(P)H activity|0008941||IEA,oxygen binding|0019825||IEA,heme binding|0020037||IEA,FAD binding|0071949||IEA;go_process=response to nitrosative stress|0051409||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311445.1;locus_tag=AD39_RS09775;product=NO-inducible flavohemoprotein;protein_id=WP_000883124.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 132278 132616 . - . ID=gene-AD39_RS09770;Name=glnB;gbkey=Gene;gene=glnB;gene_biotype=protein_coding;locus_tag=AD39_RS09770;old_locus_tag=AD39_2996 NZ_JJLH01000040.1 Protein Homology CDS 132278 132616 . - 0 ID=cds-WP_000717694.1;Parent=gene-AD39_RS09770;Dbxref=GenBank:WP_000717694.1;Name=WP_000717694.1;gbkey=CDS;gene=glnB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017373484.1;locus_tag=AD39_RS09770;product=nitrogen regulatory protein P-II;protein_id=WP_000717694.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 132677 134011 . - . ID=gene-AD39_RS09765;Name=glrR;gbkey=Gene;gene=glrR;gene_biotype=protein_coding;locus_tag=AD39_RS09765;old_locus_tag=AD39_2997 NZ_JJLH01000040.1 Protein Homology CDS 132677 134011 . - 0 ID=cds-WP_001298983.1;Parent=gene-AD39_RS09765;Dbxref=GenBank:WP_001298983.1;Name=WP_001298983.1;Ontology_term=GO:0000160,GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;gene=glrR;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311447.1;locus_tag=AD39_RS09765;product=two-component system response regulator GlrR;protein_id=WP_001298983.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 134001 134714 . - . ID=gene-AD39_RS09760;Name=qseG;gbkey=Gene;gene=qseG;gene_biotype=protein_coding;locus_tag=AD39_RS09760;old_locus_tag=AD39_2998 NZ_JJLH01000040.1 Protein Homology CDS 134001 134714 . - 0 ID=cds-WP_001345753.1;Parent=gene-AD39_RS09760;Dbxref=GenBank:WP_001345753.1;Name=WP_001345753.1;gbkey=CDS;gene=qseG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311448.1;locus_tag=AD39_RS09760;product=two-component system QseEF-associated lipoprotein QseG;protein_id=WP_001345753.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 134879 136306 . - . ID=gene-AD39_RS09755;Name=qseE;gbkey=Gene;gene=qseE;gene_biotype=protein_coding;locus_tag=AD39_RS09755;old_locus_tag=AD39_2999 NZ_JJLH01000040.1 Protein Homology CDS 134879 136306 . - 0 ID=cds-WP_001297612.1;Parent=gene-AD39_RS09755;Dbxref=GenBank:WP_001297612.1;Name=WP_001297612.1;gbkey=CDS;gene=qseE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417051.2;locus_tag=AD39_RS09755;product=two component system sensor histidine kinase QseE/GlrK;protein_id=WP_001297612.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 136864 140751 . - . ID=gene-AD39_RS09750;Name=purL;gbkey=Gene;gene=purL;gene_biotype=protein_coding;gene_synonym=purI;locus_tag=AD39_RS09750;old_locus_tag=AD39_3000 NZ_JJLH01000040.1 Protein Homology CDS 136864 140751 . - 0 ID=cds-WP_001330944.1;Parent=gene-AD39_RS09750;Dbxref=GenBank:WP_001330944.1;Name=WP_001330944.1;Ontology_term=GO:0004642;gbkey=CDS;gene=purL;go_function=phosphoribosylformylglycinamidine synthase activity|0004642||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311450.1;locus_tag=AD39_RS09750;product=phosphoribosylformylglycinamidine synthase;protein_id=WP_001330944.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 141009 142565 . + . ID=gene-AD39_RS09745;Name=mltF;gbkey=Gene;gene=mltF;gene_biotype=protein_coding;locus_tag=AD39_RS09745;old_locus_tag=AD39_3001 NZ_JJLH01000040.1 Protein Homology CDS 141009 142565 . + 0 ID=cds-WP_000734212.1;Parent=gene-AD39_RS09745;Dbxref=GenBank:WP_000734212.1;Name=WP_000734212.1;Ontology_term=GO:0000270,GO:0008933,GO:0016020;gbkey=CDS;gene=mltF;go_component=membrane|0016020||IEA;go_function=peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417053.2;locus_tag=AD39_RS09745;product=membrane-bound lytic murein transglycosylase MltF;protein_id=WP_000734212.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 142562 143065 . - . ID=gene-AD39_RS09740;Name=tadA;gbkey=Gene;gene=tadA;gene_biotype=protein_coding;locus_tag=AD39_RS09740;old_locus_tag=AD39_3002 NZ_JJLH01000040.1 Protein Homology CDS 142562 143065 . - 0 ID=cds-WP_001297409.1;Parent=gene-AD39_RS09740;Dbxref=GenBank:WP_001297409.1;Name=WP_001297409.1;Ontology_term=GO:0002100,GO:0008251,GO:0008270;gbkey=CDS;gene=tadA;go_function=tRNA-specific adenosine deaminase activity|0008251||IEA,zinc ion binding|0008270||IEA;go_process=tRNA wobble adenosine to inosine editing|0002100||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417054.2;locus_tag=AD39_RS09740;product=tRNA adenosine(34) deaminase TadA;protein_id=WP_001297409.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 143123 143758 . - . ID=gene-AD39_RS09735;Name=yfhb;gbkey=Gene;gene=yfhb;gene_biotype=protein_coding;locus_tag=AD39_RS09735;old_locus_tag=AD39_3003 NZ_JJLH01000040.1 Protein Homology CDS 143123 143758 . - 0 ID=cds-WP_000190655.1;Parent=gene-AD39_RS09735;Dbxref=GenBank:WP_000190655.1;Name=WP_000190655.1;Ontology_term=GO:0016787;gbkey=CDS;gene=yfhb;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417055.4;locus_tag=AD39_RS09735;product=phosphatidylglycerophosphatase C;protein_id=WP_000190655.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 143967 144815 . + . ID=gene-AD39_RS09730;Name=yfhH;gbkey=Gene;gene=yfhH;gene_biotype=protein_coding;locus_tag=AD39_RS09730;old_locus_tag=AD39_3004 NZ_JJLH01000040.1 Protein Homology CDS 143967 144815 . + 0 ID=cds-WP_001013779.1;Parent=gene-AD39_RS09730;Dbxref=GenBank:WP_001013779.1;Name=WP_001013779.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yfhH;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417056.2;locus_tag=AD39_RS09730;product=MurR/RpiR family transcriptional regulator;protein_id=WP_001013779.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 144871 145131 . + . ID=gene-AD39_RS09725;Name=yfhL;gbkey=Gene;gene=yfhL;gene_biotype=protein_coding;locus_tag=AD39_RS09725;old_locus_tag=AD39_3005 NZ_JJLH01000040.1 Protein Homology CDS 144871 145131 . + 0 ID=cds-WP_001196283.1;Parent=gene-AD39_RS09725;Dbxref=GenBank:WP_001196283.1;Name=WP_001196283.1;gbkey=CDS;gene=yfhL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417057.1;locus_tag=AD39_RS09725;product=4Fe-4S dicluster ferredoxin YfhL;protein_id=WP_001196283.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 145325 145405 . - . ID=gene-AD39_RS0124945;Name=shoB;gbkey=Gene;gene=shoB;gene_biotype=protein_coding;locus_tag=AD39_RS0124945 NZ_JJLH01000040.1 Protein Homology CDS 145325 145405 . - 0 ID=cds-WP_000128776.1;Parent=gene-AD39_RS0124945;Dbxref=GenBank:WP_000128776.1;Name=WP_000128776.1;gbkey=CDS;gene=shoB;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791251.1;locus_tag=AD39_RS0124945;product=type I toxin-antitoxin system toxin ShoB;protein_id=WP_000128776.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 145825 146205 . - . ID=gene-AD39_RS09720;Name=acpS;gbkey=Gene;gene=acpS;gene_biotype=protein_coding;locus_tag=AD39_RS09720;old_locus_tag=AD39_3006 NZ_JJLH01000040.1 Protein Homology CDS 145825 146205 . - 0 ID=cds-WP_000986029.1;Parent=gene-AD39_RS09720;Dbxref=GenBank:WP_000986029.1;Name=WP_000986029.1;Ontology_term=GO:0008610,GO:0008897;gbkey=CDS;gene=acpS;go_function=holo-[acyl-carrier-protein] synthase activity|0008897||IEA;go_process=lipid biosynthetic process|0008610||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708415.1;locus_tag=AD39_RS09720;product=holo-ACP synthase;protein_id=WP_000986029.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 146205 146936 . - . ID=gene-AD39_RS09715;Name=pdxJ;gbkey=Gene;gene=pdxJ;gene_biotype=protein_coding;locus_tag=AD39_RS09715;old_locus_tag=AD39_3007 NZ_JJLH01000040.1 Protein Homology CDS 146205 146936 . - 0 ID=cds-WP_001297412.1;Parent=gene-AD39_RS09715;Dbxref=GenBank:WP_001297412.1;Name=WP_001297412.1;Ontology_term=GO:0008615,GO:0033856;gbkey=CDS;gene=pdxJ;go_function=pyridoxine 5'-phosphate synthase activity|0033856||IEA;go_process=pyridoxine biosynthetic process|0008615||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311457.1;locus_tag=AD39_RS09715;product=pyridoxine 5'-phosphate synthase;protein_id=WP_001297412.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 146948 147676 . - . ID=gene-AD39_RS09710;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=AD39_RS09710;old_locus_tag=AD39_3008 NZ_JJLH01000040.1 Protein Homology CDS 146948 147676 . - 0 ID=cds-WP_000399393.1;Parent=gene-AD39_RS09710;Dbxref=GenBank:WP_000399393.1;Name=WP_000399393.1;Ontology_term=GO:0006281,GO:0006310,GO:0003677;gbkey=CDS;gene=recO;go_function=DNA binding|0003677||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311458.1;locus_tag=AD39_RS09710;product=DNA repair protein RecO;protein_id=WP_000399393.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 147688 148593 . - . ID=gene-AD39_RS09705;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;locus_tag=AD39_RS09705;old_locus_tag=AD39_3009 NZ_JJLH01000040.1 Protein Homology CDS 147688 148593 . - 0 ID=cds-WP_000020737.1;Parent=gene-AD39_RS09705;Dbxref=GenBank:WP_000020737.1;Name=WP_000020737.1;Ontology_term=GO:0003723,GO:0005525;gbkey=CDS;gene=era;go_function=RNA binding|0003723||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417061.1;locus_tag=AD39_RS09705;product=GTPase Era;protein_id=WP_000020737.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 148590 149270 . - . ID=gene-AD39_RS09700;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=AD39_RS09700;old_locus_tag=AD39_3010 NZ_JJLH01000040.1 Protein Homology CDS 148590 149270 . - 0 ID=cds-WP_001068343.1;Parent=gene-AD39_RS09700;Dbxref=GenBank:WP_001068343.1;Name=WP_001068343.1;Ontology_term=GO:0006364,GO:0006396,GO:0003723,GO:0004525;gbkey=CDS;gene=rnc;go_function=RNA binding|0003723||IEA,ribonuclease III activity|0004525||IEA;go_process=rRNA processing|0006364||IEA,RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015960048.1;locus_tag=AD39_RS09700;product=ribonuclease III;protein_id=WP_001068343.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 149543 150517 . - . ID=gene-AD39_RS09695;Name=lepB;gbkey=Gene;gene=lepB;gene_biotype=protein_coding;locus_tag=AD39_RS09695;old_locus_tag=AD39_3011 NZ_JJLH01000040.1 Protein Homology CDS 149543 150517 . - 0 ID=cds-WP_000002542.1;Parent=gene-AD39_RS09695;Dbxref=GenBank:WP_000002542.1;Name=WP_000002542.1;Ontology_term=GO:0006465,GO:0004252;gbkey=CDS;gene=lepB;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=signal peptide processing|0006465||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311461.1;locus_tag=AD39_RS09695;product=signal peptidase I;protein_id=WP_000002542.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 150533 152332 . - . ID=gene-AD39_RS09690;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=AD39_RS09690;old_locus_tag=AD39_3012 NZ_JJLH01000040.1 Protein Homology CDS 150533 152332 . - 0 ID=cds-WP_000790168.1;Parent=gene-AD39_RS09690;Dbxref=GenBank:WP_000790168.1;Name=WP_000790168.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=lepA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311462.1;locus_tag=AD39_RS09690;product=translation elongation factor 4;protein_id=WP_000790168.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 152530 153009 . - . ID=gene-AD39_RS09685;Name=rseC;gbkey=Gene;gene=rseC;gene_biotype=protein_coding;locus_tag=AD39_RS09685;old_locus_tag=AD39_3013 NZ_JJLH01000040.1 Protein Homology CDS 152530 153009 . - 0 ID=cds-WP_000589068.1;Parent=gene-AD39_RS09685;Dbxref=GenBank:WP_000589068.1;Name=WP_000589068.1;gbkey=CDS;gene=rseC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417065.1;locus_tag=AD39_RS09685;product=SoxR-reducing system protein RseC;protein_id=WP_000589068.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 153006 153962 . - . ID=gene-AD39_RS09680;Name=rseB;gbkey=Gene;gene=rseB;gene_biotype=protein_coding;locus_tag=AD39_RS09680;old_locus_tag=AD39_3014 NZ_JJLH01000040.1 Protein Homology CDS 153006 153962 . - 0 ID=cds-WP_000812053.1;Parent=gene-AD39_RS09680;Dbxref=GenBank:WP_000812053.1;Name=WP_000812053.1;gbkey=CDS;gene=rseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311464.1;locus_tag=AD39_RS09680;product=sigma-E factor regulatory protein RseB;protein_id=WP_000812053.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 153962 154612 . - . ID=gene-AD39_RS09675;Name=rseA;gbkey=Gene;gene=rseA;gene_biotype=protein_coding;locus_tag=AD39_RS09675;old_locus_tag=AD39_3015 NZ_JJLH01000040.1 Protein Homology CDS 153962 154612 . - 0 ID=cds-WP_001168459.1;Parent=gene-AD39_RS09675;Dbxref=GenBank:WP_001168459.1;Name=WP_001168459.1;Ontology_term=GO:0016989;gbkey=CDS;gene=rseA;go_function=sigma factor antagonist activity|0016989||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417067.1;locus_tag=AD39_RS09675;product=anti-sigma-E factor RseA;protein_id=WP_001168459.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 154645 155220 . - . ID=gene-AD39_RS09670;Name=rpoE;gbkey=Gene;gene=rpoE;gene_biotype=protein_coding;locus_tag=AD39_RS09670;old_locus_tag=AD39_3016 NZ_JJLH01000040.1 Protein Homology CDS 154645 155220 . - 0 ID=cds-WP_001295364.1;Parent=gene-AD39_RS09670;Dbxref=GenBank:WP_001295364.1;Name=WP_001295364.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoE;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005070454.1;locus_tag=AD39_RS09670;product=RNA polymerase sigma factor RpoE;protein_id=WP_001295364.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 155217 155372 . - . ID=gene-AD39_RS29145;Name=rseD;gbkey=Gene;gene=rseD;gene_biotype=protein_coding;locus_tag=AD39_RS29145 NZ_JJLH01000040.1 Protein Homology CDS 155217 155372 . - 0 ID=cds-WP_001303621.1;Parent=gene-AD39_RS29145;Dbxref=GenBank:WP_001303621.1;Name=WP_001303621.1;gbkey=CDS;gene=rseD;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518806.1;locus_tag=AD39_RS29145;product=rpoE leader peptide RseD;protein_id=WP_001303621.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 155628 157250 . + . ID=gene-AD39_RS09665;Name=nadB;gbkey=Gene;gene=nadB;gene_biotype=protein_coding;locus_tag=AD39_RS09665;old_locus_tag=AD39_3017 NZ_JJLH01000040.1 Protein Homology CDS 155628 157250 . + 0 ID=cds-WP_001094499.1;Parent=gene-AD39_RS09665;Dbxref=GenBank:WP_001094499.1;Name=WP_001094499.1;Ontology_term=GO:0009435,GO:0008734;gbkey=CDS;gene=nadB;go_function=L-aspartate oxidase activity|0008734||IEA;go_process=NAD biosynthetic process|0009435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417069.1;locus_tag=AD39_RS09665;product=L-aspartate oxidase;protein_id=WP_001094499.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 157235 157972 . - . ID=gene-AD39_RS09660;Name=trmN;gbkey=Gene;gene=trmN;gene_biotype=protein_coding;locus_tag=AD39_RS09660;old_locus_tag=AD39_3018 NZ_JJLH01000040.1 Protein Homology CDS 157235 157972 . - 0 ID=cds-WP_001402413.1;Parent=gene-AD39_RS09660;Dbxref=GenBank:WP_001402413.1;Name=WP_001402413.1;Ontology_term=GO:0030488,GO:0003676,GO:0016430;gbkey=CDS;gene=trmN;go_function=nucleic acid binding|0003676||IEA,tRNA (adenine-N6)-methyltransferase activity|0016430||IEA;go_process=tRNA methylation|0030488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417070.2;locus_tag=AD39_RS09660;product=tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN;protein_id=WP_001402413.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 158104 159438 . + . ID=gene-AD39_RS09655;Name=srmB;gbkey=Gene;gene=srmB;gene_biotype=protein_coding;locus_tag=AD39_RS09655;old_locus_tag=AD39_3019 NZ_JJLH01000040.1 Protein Homology CDS 158104 159438 . + 0 ID=cds-WP_000219193.1;Parent=gene-AD39_RS09655;Dbxref=GenBank:WP_000219193.1;Name=WP_000219193.1;Ontology_term=GO:0000027,GO:0003724;gbkey=CDS;gene=srmB;go_function=RNA helicase activity|0003724||IEA;go_process=ribosomal large subunit assembly|0000027||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311469.1;locus_tag=AD39_RS09655;product=ATP-dependent RNA helicase SrmB;protein_id=WP_000219193.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 159647 160528 . - . ID=gene-AD39_RS09650;Name=yfiE;gbkey=Gene;gene=yfiE;gene_biotype=protein_coding;locus_tag=AD39_RS09650;old_locus_tag=AD39_3020 NZ_JJLH01000040.1 Protein Homology CDS 159647 160528 . - 0 ID=cds-WP_000365855.1;Parent=gene-AD39_RS09650;Dbxref=GenBank:WP_000365855.1;Name=WP_000365855.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=yfiE;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417072.4;locus_tag=AD39_RS09650;product=LysR family transcriptional regulator;protein_id=WP_000365855.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 160631 161218 . + . ID=gene-AD39_RS09645;Name=eamB;gbkey=Gene;gene=eamB;gene_biotype=protein_coding;locus_tag=AD39_RS09645;old_locus_tag=AD39_3021 NZ_JJLH01000040.1 Protein Homology CDS 160631 161218 . + 0 ID=cds-WP_000189207.1;Parent=gene-AD39_RS09645;Dbxref=GenBank:WP_000189207.1;Name=WP_000189207.1;gbkey=CDS;gene=eamB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417073.1;locus_tag=AD39_RS09645;product=cysteine/O-acetylserine transporter;protein_id=WP_000189207.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 161274 161657 . - . ID=gene-AD39_RS09640;Name=grcA;gbkey=Gene;gene=grcA;gene_biotype=protein_coding;locus_tag=AD39_RS09640;old_locus_tag=AD39_3022 NZ_JJLH01000040.1 Protein Homology CDS 161274 161657 . - 0 ID=cds-WP_000627807.1;Parent=gene-AD39_RS09640;Dbxref=GenBank:WP_000627807.1;Name=WP_000627807.1;Ontology_term=GO:0003824;gbkey=CDS;gene=grcA;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007728348.1;locus_tag=AD39_RS09640;product=autonomous glycyl radical cofactor GrcA;protein_id=WP_000627807.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 161962 162651 . + . ID=gene-AD39_RS09635;Name=ung;gbkey=Gene;gene=ung;gene_biotype=protein_coding;locus_tag=AD39_RS09635;old_locus_tag=AD39_3023 NZ_JJLH01000040.1 Protein Homology CDS 161962 162651 . + 0 ID=cds-WP_001262723.1;Parent=gene-AD39_RS09635;Dbxref=GenBank:WP_001262723.1;Name=WP_001262723.1;Ontology_term=GO:0006284,GO:0004844,GO:0016799;gbkey=CDS;gene=ung;go_function=uracil DNA N-glycosylase activity|0004844||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA;go_process=base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417075.1;locus_tag=AD39_RS09635;product=uracil-DNA glycosylase;protein_id=WP_001262723.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 162699 163736 . - . ID=gene-AD39_RS09630;Name=yfiF;gbkey=Gene;gene=yfiF;gene_biotype=protein_coding;locus_tag=AD39_RS09630;old_locus_tag=AD39_3024 NZ_JJLH01000040.1 Protein Homology CDS 162699 163736 . - 0 ID=cds-WP_000997411.1;Parent=gene-AD39_RS09630;Dbxref=GenBank:WP_000997411.1;Name=WP_000997411.1;Ontology_term=GO:0006396,GO:0003723,GO:0008173;gbkey=CDS;gene=yfiF;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311474.1;locus_tag=AD39_RS09630;product=tRNA/rRNA methyltransferase;protein_id=WP_000997411.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 163943 164362 . + . ID=gene-AD39_RS09625;Name=trxC;gbkey=Gene;gene=trxC;gene_biotype=protein_coding;locus_tag=AD39_RS09625;old_locus_tag=AD39_3025 NZ_JJLH01000040.1 Protein Homology CDS 163943 164362 . + 0 ID=cds-WP_001098726.1;Parent=gene-AD39_RS09625;Dbxref=GenBank:WP_001098726.1;Name=WP_001098726.1;Ontology_term=GO:0006662,GO:0015035;gbkey=CDS;gene=trxC;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=glycerol ether metabolic process|0006662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311475.1;locus_tag=AD39_RS09625;product=thioredoxin TrxC;protein_id=WP_001098726.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 164431 165129 . + . ID=gene-AD39_RS09620;Name=tapT;gbkey=Gene;gene=tapT;gene_biotype=protein_coding;gene_synonym=tuaA,yfiP;locus_tag=AD39_RS09620;old_locus_tag=AD39_3026 NZ_JJLH01000040.1 Protein Homology CDS 164431 165129 . + 0 ID=cds-WP_000138184.1;Parent=gene-AD39_RS09620;Dbxref=GenBank:WP_000138184.1;Name=WP_000138184.1;gbkey=CDS;gene=tapT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311476.2;locus_tag=AD39_RS09620;product=tRNA-uridine aminocarboxypropyltransferase;protein_id=WP_000138184.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 165161 167821 . + . ID=gene-AD39_RS09615;Name=patZ;gbkey=Gene;gene=patZ;gene_biotype=protein_coding;locus_tag=AD39_RS09615;old_locus_tag=AD39_3027 NZ_JJLH01000040.1 Protein Homology CDS 165161 167821 . + 0 ID=cds-WP_000082969.1;Parent=gene-AD39_RS09615;Dbxref=GenBank:WP_000082969.1;Name=WP_000082969.1;gbkey=CDS;gene=patZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417079.1;locus_tag=AD39_RS09615;product=peptidyl-lysine N-acetyltransferase PatZ;protein_id=WP_000082969.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 167935 169290 . + . ID=gene-AD39_RS09610;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;locus_tag=AD39_RS09610;old_locus_tag=AD39_3028 NZ_JJLH01000040.1 Protein Homology CDS 167935 169290 . + 0 ID=cds-WP_000949265.1;Parent=gene-AD39_RS09610;Dbxref=GenBank:WP_000949265.1;Name=WP_000949265.1;Ontology_term=GO:0032049,GO:0008444;gbkey=CDS;gene=pssA;go_function=CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity|0008444||IEA;go_process=cardiolipin biosynthetic process|0032049||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121216.1;locus_tag=AD39_RS09610;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=WP_000949265.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 169336 169659 . + . ID=gene-AD39_RS09605;Name=yfiM;gbkey=Gene;gene=yfiM;gene_biotype=protein_coding;locus_tag=AD39_RS09605;old_locus_tag=AD39_3029 NZ_JJLH01000040.1 Protein Homology CDS 169336 169659 . + 0 ID=cds-WP_001300818.1;Parent=gene-AD39_RS09605;Dbxref=GenBank:WP_001300818.1;Name=WP_001300818.1;gbkey=CDS;gene=yfiM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417081.2;locus_tag=AD39_RS09605;product=YfiM family lipoprotein;protein_id=WP_001300818.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 169656 170954 . - . ID=gene-AD39_RS09600;Name=kgtP;gbkey=Gene;gene=kgtP;gene_biotype=protein_coding;locus_tag=AD39_RS09600;old_locus_tag=AD39_3030 NZ_JJLH01000040.1 Protein Homology CDS 169656 170954 . - 0 ID=cds-WP_000841103.1;Parent=gene-AD39_RS09600;Dbxref=GenBank:WP_000841103.1;Name=WP_000841103.1;gbkey=CDS;gene=kgtP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417082.1;locus_tag=AD39_RS09600;product=alpha-ketoglutarate permease;protein_id=WP_000841103.1;transl_table=11 NZ_JJLH01000040.1 RefSeq gene 171280 171395 . - . ID=gene-AD39_RS09595;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=AD39_RS09595;old_locus_tag=AD39_3031 NZ_JJLH01000040.1 cmsearch rRNA 171280 171395 . - . ID=rna-AD39_RS09595;Parent=gene-AD39_RS09595;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS09595;product=5S ribosomal RNA NZ_JJLH01000040.1 cmsearch exon 171280 171395 . - . ID=exon-AD39_RS09595-1;Parent=rna-AD39_RS09595;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS09595;product=5S ribosomal RNA NZ_JJLH01000040.1 RefSeq gene 171491 172641 . - . ID=gene-AD39_RS0124980;Name=AD39_RS0124980;end_range=172641,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0124980;partial=true NZ_JJLH01000040.1 cmsearch rRNA 171491 172641 . - . ID=rna-AD39_RS0124980;Parent=gene-AD39_RS0124980;Dbxref=RFAM:RF02541;end_range=172641,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0124980;partial=true;product=23S ribosomal RNA NZ_JJLH01000040.1 cmsearch exon 171491 172641 . - . ID=exon-AD39_RS0124980-1;Parent=rna-AD39_RS0124980;Dbxref=RFAM:RF02541;end_range=172641,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0124980;partial=true;product=23S ribosomal RNA ##sequence-region NZ_JJLH01000041.1 1 43115 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000041.1 RefSeq region 1 43115 . + . ID=NZ_JJLH01000041.1:1..43115;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000041.1 RefSeq gene 1 1442 . - . ID=gene-AD39_RS0124985;Name=AD39_RS0124985;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0124985;partial=true;start_range=.,1 NZ_JJLH01000041.1 cmsearch rRNA 1 1442 . - . ID=rna-AD39_RS0124985;Parent=gene-AD39_RS0124985;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0124985;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_JJLH01000041.1 cmsearch exon 1 1442 . - . ID=exon-AD39_RS0124985-1;Parent=rna-AD39_RS0124985;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0124985;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_JJLH01000041.1 RefSeq gene 1884 4457 . - . ID=gene-AD39_RS09590;Name=clpB;gbkey=Gene;gene=clpB;gene_biotype=protein_coding;locus_tag=AD39_RS09590;old_locus_tag=AD39_3035 NZ_JJLH01000041.1 Protein Homology CDS 1884 4457 . - 0 ID=cds-WP_001235102.1;Parent=gene-AD39_RS09590;Dbxref=GenBank:WP_001235102.1;Name=WP_001235102.1;Ontology_term=GO:0009408,GO:0042026,GO:0005524,GO:0016887;gbkey=CDS;gene=clpB;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=response to heat|0009408||IEA,protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002461515.1;locus_tag=AD39_RS09590;product=ATP-dependent chaperone ClpB;protein_id=WP_001235102.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 4587 5318 . - . ID=gene-AD39_RS09585;Name=yfiH;gbkey=Gene;gene=yfiH;gene_biotype=protein_coding;locus_tag=AD39_RS09585;old_locus_tag=AD39_3036 NZ_JJLH01000041.1 Protein Homology CDS 4587 5318 . - 0 ID=cds-WP_001402419.1;Parent=gene-AD39_RS09585;Dbxref=GenBank:WP_001402419.1;Name=WP_001402419.1;Ontology_term=GO:0004000,GO:0004731,GO:0042803;gbkey=CDS;gene=yfiH;go_function=adenosine deaminase activity|0004000||IEA,purine-nucleoside phosphorylase activity|0004731||IEA,protein homodimerization activity|0042803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708443.1;locus_tag=AD39_RS09585;product=purine nucleoside phosphorylase YfiH;protein_id=WP_001402419.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 5315 6295 . - . ID=gene-AD39_RS09580;Name=rluD;gbkey=Gene;gene=rluD;gene_biotype=protein_coding;locus_tag=AD39_RS09580;old_locus_tag=AD39_3037 NZ_JJLH01000041.1 Protein Homology CDS 5315 6295 . - 0 ID=cds-WP_000079112.1;Parent=gene-AD39_RS09580;Dbxref=GenBank:WP_000079112.1;Name=WP_000079112.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=rluD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017383977.1;locus_tag=AD39_RS09580;product=23S rRNA pseudouridine(1911/1915/1917) synthase RluD;protein_id=WP_000079112.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 6430 7167 . + . ID=gene-AD39_RS09575;Name=bamD;gbkey=Gene;gene=bamD;gene_biotype=protein_coding;locus_tag=AD39_RS09575;old_locus_tag=AD39_3038 NZ_JJLH01000041.1 Protein Homology CDS 6430 7167 . + 0 ID=cds-WP_000197686.1;Parent=gene-AD39_RS09575;Dbxref=GenBank:WP_000197686.1;Name=WP_000197686.1;gbkey=CDS;gene=bamD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311485.1;locus_tag=AD39_RS09575;product=outer membrane protein assembly factor BamD;protein_id=WP_000197686.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 7438 7779 . + . ID=gene-AD39_RS09570;Name=raiA;gbkey=Gene;gene=raiA;gene_biotype=protein_coding;locus_tag=AD39_RS09570;old_locus_tag=AD39_3039 NZ_JJLH01000041.1 Protein Homology CDS 7438 7779 . + 0 ID=cds-WP_000178456.1;Parent=gene-AD39_RS09570;Dbxref=GenBank:WP_000178456.1;Name=WP_000178456.1;gbkey=CDS;gene=raiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311487.1;locus_tag=AD39_RS09570;product=ribosome-associated translation inhibitor RaiA;protein_id=WP_000178456.1;transl_table=11 NZ_JJLH01000041.1 cmsearch sequence_feature 7882 8007 . + . ID=id-NZ_JJLH01000041.1:7882..8007;Dbxref=RFAM:RF01859;Note=Phe leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5 NZ_JJLH01000041.1 RefSeq gene 7883 7930 . + . ID=gene-AD39_RS29150;Name=pheL;gbkey=Gene;gene=pheL;gene_biotype=protein_coding;locus_tag=AD39_RS29150 NZ_JJLH01000041.1 Protein Homology CDS 7883 7930 . + 0 ID=cds-WP_001386991.1;Parent=gene-AD39_RS29150;Dbxref=GenBank:WP_001386991.1;Name=WP_001386991.1;Ontology_term=GO:0031556;gbkey=CDS;gene=pheL;go_process=transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311488.1;locus_tag=AD39_RS29150;product=pheA operon leader peptide PheL;protein_id=WP_001386991.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 8029 9189 . + . ID=gene-AD39_RS09565;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=protein_coding;locus_tag=AD39_RS09565;old_locus_tag=AD39_3040 NZ_JJLH01000041.1 Protein Homology CDS 8029 9189 . + 0 ID=cds-WP_000200116.1;Parent=gene-AD39_RS09565;Dbxref=GenBank:WP_000200116.1;Name=WP_000200116.1;Ontology_term=GO:0009094,GO:0046417,GO:0004106,GO:0004664;gbkey=CDS;gene=pheA;go_function=chorismate mutase activity|0004106||IEA,prephenate dehydratase activity|0004664||IEA;go_process=L-phenylalanine biosynthetic process|0009094||IEA,chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311489.1;locus_tag=AD39_RS09565;product=bifunctional chorismate mutase/prephenate dehydratase;protein_id=WP_000200116.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 9232 10353 . - . ID=gene-AD39_RS09560;Name=tyrA;gbkey=Gene;gene=tyrA;gene_biotype=protein_coding;locus_tag=AD39_RS09560;old_locus_tag=AD39_3041 NZ_JJLH01000041.1 Protein Homology CDS 9232 10353 . - 0 ID=cds-WP_000225221.1;Parent=gene-AD39_RS09560;Dbxref=GenBank:WP_000225221.1;Name=WP_000225221.1;Ontology_term=GO:0006571,GO:0046417,GO:0004106,GO:0004665,GO:0008977;gbkey=CDS;gene=tyrA;go_function=chorismate mutase activity|0004106||IEA,prephenate dehydrogenase (NADP+) activity|0004665||IEA,prephenate dehydrogenase (NAD+) activity|0008977||IEA;go_process=tyrosine biosynthetic process|0006571||IEA,chorismate metabolic process|0046417||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311490.1;locus_tag=AD39_RS09560;product=bifunctional chorismate mutase/prephenate dehydrogenase;protein_id=WP_000225221.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 10364 11434 . - . ID=gene-AD39_RS09555;Name=aroF;gbkey=Gene;gene=aroF;gene_biotype=protein_coding;locus_tag=AD39_RS09555;old_locus_tag=AD39_3042 NZ_JJLH01000041.1 Protein Homology CDS 10364 11434 . - 0 ID=cds-WP_001168044.1;Parent=gene-AD39_RS09555;Dbxref=GenBank:WP_001168044.1;Name=WP_001168044.1;gbkey=CDS;gene=aroF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311491.1;locus_tag=AD39_RS09555;product=3-deoxy-7-phosphoheptulonate synthase AroF;protein_id=WP_001168044.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 11644 12009 . + . ID=gene-AD39_RS09550;Name=yfiL;gbkey=Gene;gene=yfiL;gene_biotype=protein_coding;locus_tag=AD39_RS09550;old_locus_tag=AD39_3043 NZ_JJLH01000041.1 Protein Homology CDS 11644 12009 . + 0 ID=cds-WP_001314943.1;Parent=gene-AD39_RS09550;Dbxref=GenBank:WP_001314943.1;Name=WP_001314943.1;gbkey=CDS;gene=yfiL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417093.2;locus_tag=AD39_RS09550;product=DUF2799 domain-containing protein;protein_id=WP_001314943.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 12159 12677 . + . ID=gene-AD39_RS09545;Name=yfiR;gbkey=Gene;gene=yfiR;gene_biotype=protein_coding;locus_tag=AD39_RS09545;old_locus_tag=AD39_3044 NZ_JJLH01000041.1 Protein Homology CDS 12159 12677 . + 0 ID=cds-WP_001212391.1;Parent=gene-AD39_RS09545;Dbxref=GenBank:WP_001212391.1;Name=WP_001212391.1;gbkey=CDS;gene=yfiR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311493.1;locus_tag=AD39_RS09545;product=YfiR family protein;protein_id=WP_001212391.1;transl_table=11 NZ_JJLH01000041.1 RefSeq pseudogene 12667 13893 . + . ID=gene-AD39_RS0124995;Name=dgcN;gbkey=Gene;gene=dgcN;gene_biotype=pseudogene;locus_tag=AD39_RS0124995;pseudo=true NZ_JJLH01000041.1 Protein Homology CDS 12667 13893 . + 0 ID=cds-AD39_RS0124995;Parent=gene-AD39_RS0124995;Note=internal stop;Ontology_term=GO:0007165,GO:0016020;gbkey=CDS;gene=dgcN;go_component=membrane|0016020||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417095.1;locus_tag=AD39_RS0124995;product=diguanylate cyclase DgcN;pseudo=true;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 13909 14391 . + . ID=gene-AD39_RS0125000;Name=yfiB;gbkey=Gene;gene=yfiB;gene_biotype=protein_coding;locus_tag=AD39_RS0125000;old_locus_tag=AD39_3047 NZ_JJLH01000041.1 Protein Homology CDS 13909 14391 . + 0 ID=cds-WP_000589828.1;Parent=gene-AD39_RS0125000;Dbxref=GenBank:WP_000589828.1;Name=WP_000589828.1;gbkey=CDS;gene=yfiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311495.1;locus_tag=AD39_RS0125000;product=OmpA family protein;protein_id=WP_000589828.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 14468 14815 . - . ID=gene-AD39_RS09540;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;locus_tag=AD39_RS09540;old_locus_tag=AD39_3048 NZ_JJLH01000041.1 Protein Homology CDS 14468 14815 . - 0 ID=cds-WP_000065253.1;Parent=gene-AD39_RS09540;Dbxref=GenBank:WP_000065253.1;Name=WP_000065253.1;Ontology_term=GO:0006412,GO:0003735,GO:0000311,GO:0022625;gbkey=CDS;gene=rplS;go_component=plastid large ribosomal subunit|0000311||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012768745.1;locus_tag=AD39_RS09540;product=50S ribosomal protein L19;protein_id=WP_000065253.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 14857 15624 . - . ID=gene-AD39_RS09535;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=AD39_RS09535;old_locus_tag=AD39_3049 NZ_JJLH01000041.1 Protein Homology CDS 14857 15624 . - 0 ID=cds-WP_000264777.1;Parent=gene-AD39_RS09535;Dbxref=GenBank:WP_000264777.1;Name=WP_000264777.1;Ontology_term=GO:0030488,GO:0052906;gbkey=CDS;gene=trmD;go_function=tRNA (guanine(37)-N1)-methyltransferase activity|0052906||IEA;go_process=tRNA methylation|0030488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311497.1;locus_tag=AD39_RS09535;product=tRNA (guanosine(37)-N1)-methyltransferase TrmD;protein_id=WP_000264777.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 15655 16203 . - . ID=gene-AD39_RS09530;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=AD39_RS09530;old_locus_tag=AD39_3050 NZ_JJLH01000041.1 Protein Homology CDS 15655 16203 . - 0 ID=cds-WP_000043335.1;Parent=gene-AD39_RS09530;Dbxref=GenBank:WP_000043335.1;Name=WP_000043335.1;Note=Essential for efficient processing of 16S rRNA;Ontology_term=GO:0006364,GO:0043022,GO:0005840;gbkey=CDS;gene=rimM;go_component=ribosome|0005840||IEA;go_function=ribosome binding|0043022||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000043333.1;locus_tag=AD39_RS09530;product=ribosome maturation factor RimM;protein_id=WP_000043335.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 16222 16470 . - . ID=gene-AD39_RS09525;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=AD39_RS09525;old_locus_tag=AD39_3051 NZ_JJLH01000041.1 Protein Homology CDS 16222 16470 . - 0 ID=cds-WP_000256450.1;Parent=gene-AD39_RS09525;Dbxref=GenBank:WP_000256450.1;Name=WP_000256450.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsP;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000256453.1;locus_tag=AD39_RS09525;product=30S ribosomal protein S16;protein_id=WP_000256450.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 16607 17968 . - . ID=gene-AD39_RS09520;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;locus_tag=AD39_RS09520;old_locus_tag=AD39_3052 NZ_JJLH01000041.1 Protein Homology CDS 16607 17968 . - 0 ID=cds-WP_000460035.1;Parent=gene-AD39_RS09520;Dbxref=GenBank:WP_000460035.1;Name=WP_000460035.1;Ontology_term=GO:0009306,GO:0003924,GO:0005048,GO:0005525,GO:0048501;gbkey=CDS;gene=ffh;go_component=signal recognition particle%2C plasma membrane targeting|0048501||IEA;go_function=GTPase activity|0003924||IEA,signal sequence binding|0005048||IEA,GTP binding|0005525||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130432.1;locus_tag=AD39_RS09520;product=signal recognition particle protein;protein_id=WP_000460035.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 18135 18926 . + . ID=gene-AD39_RS09515;Name=ypjD;gbkey=Gene;gene=ypjD;gene_biotype=protein_coding;locus_tag=AD39_RS09515;old_locus_tag=AD39_3053 NZ_JJLH01000041.1 Protein Homology CDS 18135 18926 . + 0 ID=cds-WP_001338897.1;Parent=gene-AD39_RS09515;Dbxref=GenBank:WP_001338897.1;Name=WP_001338897.1;Ontology_term=GO:0005886;gbkey=CDS;gene=ypjD;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417102.4;locus_tag=AD39_RS09515;product=cytochrome C assembly family protein;protein_id=WP_001338897.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 18947 20233 . + . ID=gene-AD39_RS09510;Name=yfjD;gbkey=Gene;gene=yfjD;gene_biotype=protein_coding;locus_tag=AD39_RS09510;old_locus_tag=AD39_3054 NZ_JJLH01000041.1 Protein Homology CDS 18947 20233 . + 0 ID=cds-WP_010723175.1;Parent=gene-AD39_RS09510;Dbxref=GenBank:WP_010723175.1;Name=WP_010723175.1;gbkey=CDS;gene=yfjD;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026171.3;locus_tag=AD39_RS09510;product=HlyC/CorC family transporter;protein_id=WP_010723175.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 20356 20961 . + . ID=gene-AD39_RS09505;Name=AD39_RS09505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS09505;old_locus_tag=AD39_3055 NZ_JJLH01000041.1 Protein Homology CDS 20356 20961 . + 0 ID=cds-WP_032254983.1;Parent=gene-AD39_RS09505;Dbxref=GenBank:WP_032254983.1;Name=WP_032254983.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461610.1;locus_tag=AD39_RS09505;product=DUF6630 family protein;protein_id=WP_032254983.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 20996 21586 . - . ID=gene-AD39_RS09500;Name=grpE;gbkey=Gene;gene=grpE;gene_biotype=protein_coding;locus_tag=AD39_RS09500;old_locus_tag=AD39_3056 NZ_JJLH01000041.1 Protein Homology CDS 20996 21586 . - 0 ID=cds-WP_001300112.1;Parent=gene-AD39_RS09500;Dbxref=GenBank:WP_001300112.1;Name=WP_001300112.1;gbkey=CDS;gene=grpE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_461611.1;locus_tag=AD39_RS09500;product=nucleotide exchange factor GrpE;protein_id=WP_001300112.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 21709 22587 . + . ID=gene-AD39_RS09495;Name=nadK;gbkey=Gene;gene=nadK;gene_biotype=protein_coding;locus_tag=AD39_RS09495;old_locus_tag=AD39_3058 NZ_JJLH01000041.1 Protein Homology CDS 21709 22587 . + 0 ID=cds-WP_001059169.1;Parent=gene-AD39_RS09495;Dbxref=GenBank:WP_001059169.1;Name=WP_001059169.1;Ontology_term=GO:0003951;gbkey=CDS;gene=nadK;go_function=NAD+ kinase activity|0003951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020239499.1;locus_tag=AD39_RS09495;product=NAD(+) kinase;protein_id=WP_001059169.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 22673 24334 . + . ID=gene-AD39_RS09490;Name=recN;gbkey=Gene;gene=recN;gene_biotype=protein_coding;locus_tag=AD39_RS09490;old_locus_tag=AD39_3059 NZ_JJLH01000041.1 Protein Homology CDS 22673 24334 . + 0 ID=cds-WP_001467446.1;Parent=gene-AD39_RS09490;Dbxref=GenBank:WP_001467446.1;Name=WP_001467446.1;Ontology_term=GO:0006281,GO:0006310,GO:0005524;gbkey=CDS;gene=recN;go_function=ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026172.1;locus_tag=AD39_RS09490;product=DNA repair protein RecN;protein_id=WP_001467446.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 24483 24824 . + . ID=gene-AD39_RS09485;Name=bamE;gbkey=Gene;gene=bamE;gene_biotype=protein_coding;locus_tag=AD39_RS09485;old_locus_tag=AD39_3060 NZ_JJLH01000041.1 Protein Homology CDS 24483 24824 . + 0 ID=cds-WP_001203437.1;Parent=gene-AD39_RS09485;Dbxref=GenBank:WP_001203437.1;Name=WP_001203437.1;gbkey=CDS;gene=bamE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417107.2;locus_tag=AD39_RS09485;product=outer membrane protein assembly factor BamE;protein_id=WP_001203437.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 24886 25176 . - . ID=gene-AD39_RS09480;Name=yfjF;gbkey=Gene;gene=yfjF;gene_biotype=protein_coding;locus_tag=AD39_RS09480;old_locus_tag=AD39_3061 NZ_JJLH01000041.1 Protein Homology CDS 24886 25176 . - 0 ID=cds-WP_001117838.1;Parent=gene-AD39_RS09480;Dbxref=GenBank:WP_001117838.1;Name=WP_001117838.1;gbkey=CDS;gene=yfjF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417108.4;locus_tag=AD39_RS09480;product=RnfH family protein;protein_id=WP_001117838.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 25166 25603 . - . ID=gene-AD39_RS09475;Name=ratA;gbkey=Gene;gene=ratA;gene_biotype=protein_coding;locus_tag=AD39_RS09475;old_locus_tag=AD39_3062 NZ_JJLH01000041.1 Protein Homology CDS 25166 25603 . - 0 ID=cds-WP_064734979.1;Parent=gene-AD39_RS09475;Dbxref=GenBank:WP_064734979.1;Name=WP_064734979.1;gbkey=CDS;gene=ratA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010376629.1;locus_tag=AD39_RS09475;product=type II toxin-antitoxin system toxin RatA;protein_id=WP_064734979.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 25774 26256 . + . ID=gene-AD39_RS09470;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=AD39_RS09470;old_locus_tag=AD39_3063 NZ_JJLH01000041.1 Protein Homology CDS 25774 26256 . + 0 ID=cds-WP_032287601.1;Parent=gene-AD39_RS09470;Dbxref=GenBank:WP_032287601.1;Name=WP_032287601.1;Ontology_term=GO:0003723;gbkey=CDS;gene=smpB;go_function=RNA binding|0003723||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311509.1;locus_tag=AD39_RS09470;product=SsrA-binding protein SmpB;protein_id=WP_032287601.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 26471 26833 . + . ID=gene-AD39_RS26225;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=tmRNA;locus_tag=AD39_RS26225 NZ_JJLH01000041.1 cmsearch tmRNA 26471 26833 . + . ID=rna-AD39_RS26225;Parent=gene-AD39_RS26225;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26225;product=transfer-messenger RNA NZ_JJLH01000041.1 cmsearch exon 26471 26833 . + . ID=exon-AD39_RS26225-1;Parent=rna-AD39_RS26225;Dbxref=RFAM:RF00023;gbkey=tmRNA;gene=ssrA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26225;product=transfer-messenger RNA NZ_JJLH01000041.1 RefSeq gene 26994 31574 . - . ID=gene-AD39_RS09465;Name=ypjA;gbkey=Gene;gene=ypjA;gene_biotype=protein_coding;locus_tag=AD39_RS09465;old_locus_tag=AD39_3064 NZ_JJLH01000041.1 Protein Homology CDS 26994 31574 . - 0 ID=cds-WP_032287602.1;Parent=gene-AD39_RS09465;Dbxref=GenBank:WP_032287602.1;Name=WP_032287602.1;gbkey=CDS;gene=ypjA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311542.2;locus_tag=AD39_RS09465;product=adhesin-like autotransporter YpjA/EhaD;protein_id=WP_032287602.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 31639 31758 . - . ID=gene-AD39_RS27415;Name=AD39_RS27415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS27415;old_locus_tag=AD39_3065 NZ_JJLH01000041.1 Protein Homology CDS 31639 31758 . - 0 ID=cds-WP_001120794.1;Parent=gene-AD39_RS27415;Dbxref=GenBank:WP_001120794.1;Name=WP_001120794.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001131457.1;locus_tag=AD39_RS27415;product=hypothetical protein;protein_id=WP_001120794.1;transl_table=11 NZ_JJLH01000041.1 RefSeq pseudogene 31982 32149 . - . ID=gene-AD39_RS29780;Name=AD39_RS29780;end_range=32149,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29780;partial=true;pseudo=true;start_range=.,31982 NZ_JJLH01000041.1 Protein Homology CDS 31982 32149 . - 0 ID=cds-AD39_RS29780;Parent=gene-AD39_RS29780;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0006310,GO:0000150,GO:0003677;end_range=32149,.;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415676.1;locus_tag=AD39_RS29780;partial=true;product=recombinase family protein;pseudo=true;start_range=.,31982;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 32485 33963 . - . ID=gene-AD39_RS09460;Name=ypjCB;gbkey=Gene;gene=ypjCB;gene_biotype=protein_coding;locus_tag=AD39_RS09460;old_locus_tag=AD39_3067 NZ_JJLH01000041.1 Protein Homology CDS 32485 33963 . - 0 ID=cds-WP_001724893.1;Parent=gene-AD39_RS09460;Dbxref=GenBank:WP_001724893.1;Name=WP_001724893.1;gbkey=CDS;gene=ypjCB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000961338.1;locus_tag=AD39_RS09460;product=YpjCB family protein;protein_id=WP_001724893.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 34719 34794 . - . ID=gene-AD39_RS09455;Name=AD39_RS09455;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS09455;old_locus_tag=AD39_3069 NZ_JJLH01000041.1 tRNAscan-SE tRNA 34719 34794 . - . ID=rna-AD39_RS09455;Parent=gene-AD39_RS09455;anticodon=(pos:complement(34759..34761));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09455;product=tRNA-Ile NZ_JJLH01000041.1 tRNAscan-SE exon 34719 34794 . - . ID=exon-AD39_RS09455-1;Parent=rna-AD39_RS09455;anticodon=(pos:complement(34759..34761));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09455;product=tRNA-Ile NZ_JJLH01000041.1 RefSeq gene 35354 37606 . + . ID=gene-AD39_RS09450;Name=AD39_RS09450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS09450;old_locus_tag=AD39_3070 NZ_JJLH01000041.1 Protein Homology CDS 35354 37606 . + 0 ID=cds-WP_001402434.1;Parent=gene-AD39_RS09450;Dbxref=GenBank:WP_001402434.1;Name=WP_001402434.1;Ontology_term=GO:0005975,GO:0003824,GO:0043169;gbkey=CDS;go_function=catalytic activity|0003824||IEA,cation binding|0043169||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_008439272.1;locus_tag=AD39_RS09450;product=alpha amylase C-terminal domain-containing protein;protein_id=WP_001402434.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 37942 38919 . + . ID=gene-AD39_RS09445;Name=glaH;gbkey=Gene;gene=glaH;gene_biotype=protein_coding;locus_tag=AD39_RS09445;old_locus_tag=AD39_3071 NZ_JJLH01000041.1 Protein Homology CDS 37942 38919 . + 0 ID=cds-WP_001402435.1;Parent=gene-AD39_RS09445;Dbxref=GenBank:WP_001402435.1;Name=WP_001402435.1;Ontology_term=GO:0050498;gbkey=CDS;gene=glaH;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C with 2-oxoglutarate as one donor%2C and the other dehydrogenated|0050498||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311547.2;locus_tag=AD39_RS09445;product=glutarate dioxygenase GlaH;protein_id=WP_001402435.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 38939 40207 . + . ID=gene-AD39_RS09440;Name=lhgO;gbkey=Gene;gene=lhgO;gene_biotype=protein_coding;locus_tag=AD39_RS09440;old_locus_tag=AD39_3072 NZ_JJLH01000041.1 Protein Homology CDS 38939 40207 . + 0 ID=cds-WP_000271942.1;Parent=gene-AD39_RS09440;Dbxref=GenBank:WP_000271942.1;Name=WP_000271942.1;Ontology_term=GO:0016491;gbkey=CDS;gene=lhgO;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311548.2;locus_tag=AD39_RS09440;product=L-2-hydroxyglutarate oxidase;protein_id=WP_000271942.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 40230 41678 . + . ID=gene-AD39_RS09435;Name=gabD;gbkey=Gene;gene=gabD;gene_biotype=protein_coding;locus_tag=AD39_RS09435;old_locus_tag=AD39_3073 NZ_JJLH01000041.1 Protein Homology CDS 40230 41678 . + 0 ID=cds-WP_000772847.1;Parent=gene-AD39_RS09435;Dbxref=GenBank:WP_000772847.1;Name=WP_000772847.1;Ontology_term=GO:0009450,GO:0009013;gbkey=CDS;gene=gabD;go_function=succinate-semialdehyde dehydrogenase [NAD(P)+] activity|0009013||IEA;go_process=gamma-aminobutyric acid catabolic process|0009450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311549.1;locus_tag=AD39_RS09435;product=NADP-dependent succinate-semialdehyde dehydrogenase;protein_id=WP_000772847.1;transl_table=11 NZ_JJLH01000041.1 RefSeq gene 41692 42972 . + . ID=gene-AD39_RS09430;Name=gabT;gbkey=Gene;gene=gabT;gene_biotype=protein_coding;locus_tag=AD39_RS09430;old_locus_tag=AD39_3074 NZ_JJLH01000041.1 Protein Homology CDS 41692 42972 . + 0 ID=cds-WP_032251516.1;Parent=gene-AD39_RS09430;Dbxref=GenBank:WP_032251516.1;Name=WP_032251516.1;Ontology_term=GO:0009448,GO:0030170;gbkey=CDS;gene=gabT;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=gamma-aminobutyric acid metabolic process|0009448||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311550.1;locus_tag=AD39_RS09430;product=4-aminobutyrate--2-oxoglutarate transaminase;protein_id=WP_032251516.1;transl_table=11 ##sequence-region NZ_JJLH01000042.1 1 6153 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000042.1 RefSeq region 1 6153 . + . ID=NZ_JJLH01000042.1:1..6153;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000042.1 RefSeq gene 45 110 . + . ID=gene-AD39_RS30220;Name=AD39_RS30220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30220 NZ_JJLH01000042.1 Protein Homology CDS 45 110 . + 0 ID=cds-WP_432757374.1;Parent=gene-AD39_RS30220;Dbxref=GenBank:WP_432757374.1;Name=WP_432757374.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013677.6;locus_tag=AD39_RS30220;product=hypothetical protein;protein_id=WP_432757374.1;transl_table=11 NZ_JJLH01000042.1 RefSeq gene 278 583 . + . ID=gene-AD39_RS09425;Name=tnpB;gbkey=Gene;gene=tnpB;gene_biotype=protein_coding;locus_tag=AD39_RS09425;old_locus_tag=AD39_3075 NZ_JJLH01000042.1 Protein Homology CDS 278 583 . + 0 ID=cds-WP_001533477.1;Parent=gene-AD39_RS09425;Dbxref=GenBank:WP_001533477.1;Name=WP_001533477.1;Note=TnpB%2C as the term is used for proteins encoded by IS66 family insertion elements%2C is considered an accessory protein%2C since TnpC%2C encoded by a neighboring gene%2C is a DDE family transposase.;gbkey=CDS;gene=tnpB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001536669.1;locus_tag=AD39_RS09425;product=IS66 family insertion sequence element accessory protein TnpB;protein_id=WP_001533477.1;transl_table=11 NZ_JJLH01000042.1 RefSeq gene 675 2060 . + . ID=gene-AD39_RS09420;Name=tnpC;gbkey=Gene;gene=tnpC;gene_biotype=protein_coding;locus_tag=AD39_RS09420;old_locus_tag=AD39_3076 NZ_JJLH01000042.1 Protein Homology CDS 675 2060 . + 0 ID=cds-WP_001747749.1;Parent=gene-AD39_RS09420;Dbxref=GenBank:WP_001747749.1;Name=WP_001747749.1;Ontology_term=GO:0004803;gbkey=CDS;gene=tnpC;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000998048.1;locus_tag=AD39_RS09420;product=IS66 family transposase;protein_id=WP_001747749.1;transl_table=11 NZ_JJLH01000042.1 RefSeq pseudogene 2100 2177 . + . ID=gene-AD39_RS29785;Name=AD39_RS29785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29785;partial=true;pseudo=true;start_range=.,2100 NZ_JJLH01000042.1 Protein Homology CDS 2100 2177 . + 0 ID=cds-AD39_RS29785;Parent=gene-AD39_RS29785;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001563283.1;locus_tag=AD39_RS29785;partial=true;product=DUF6404 family protein;pseudo=true;start_range=.,2100;transl_table=11 NZ_JJLH01000042.1 RefSeq gene 2299 3657 . - . ID=gene-AD39_RS09415;Name=AD39_RS09415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS09415;old_locus_tag=AD39_3077 NZ_JJLH01000042.1 Protein Homology CDS 2299 3657 . - 0 ID=cds-WP_000823243.1;Parent=gene-AD39_RS09415;Dbxref=GenBank:WP_000823243.1;Name=WP_000823243.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000823236.1;locus_tag=AD39_RS09415;product=esterase-like activity of phytase family protein;protein_id=WP_000823243.1;transl_table=11 NZ_JJLH01000042.1 RefSeq pseudogene 3939 4070 . + . ID=gene-AD39_RS28635;Name=AD39_RS28635;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28635;partial=true;pseudo=true;start_range=.,3939 NZ_JJLH01000042.1 Protein Homology CDS 3939 4070 . + 0 ID=cds-AD39_RS28635;Parent=gene-AD39_RS28635;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612086.1;locus_tag=AD39_RS28635;partial=true;product=IS3 family transposase;pseudo=true;start_range=.,3939;transl_table=11 NZ_JJLH01000042.1 RefSeq pseudogene 4135 4265 . + . ID=gene-AD39_RS29790;Name=AD39_RS29790;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29790;old_locus_tag=AD39_3078;partial=true;pseudo=true;start_range=.,4135 NZ_JJLH01000042.1 Protein Homology CDS 4135 4265 . + 0 ID=cds-AD39_RS29790;Parent=gene-AD39_RS29790;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004856299.1;locus_tag=AD39_RS29790;partial=true;product=IS5/IS1182 family transposase;pseudo=true;start_range=.,4135;transl_table=11 NZ_JJLH01000042.1 RefSeq gene 4390 4647 . - . ID=gene-AD39_RS09410;Name=AD39_RS09410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS09410;old_locus_tag=AD39_3079 NZ_JJLH01000042.1 Protein Homology CDS 4390 4647 . - 0 ID=cds-WP_000555341.1;Parent=gene-AD39_RS09410;Dbxref=GenBank:WP_000555341.1;Name=WP_000555341.1;Ontology_term=GO:0071468;gbkey=CDS;go_process=cellular response to acidic pH|0071468||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016230781.1;locus_tag=AD39_RS09410;product=biofilm development regulator YmgB/AriR family protein;protein_id=WP_000555341.1;transl_table=11 NZ_JJLH01000042.1 RefSeq pseudogene 4987 5091 . - . ID=gene-AD39_RS27435;Name=AD39_RS27435;end_range=5091,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS27435;partial=true;pseudo=true NZ_JJLH01000042.1 Protein Homology CDS 4987 5091 . - 0 ID=cds-AD39_RS27435;Parent=gene-AD39_RS27435;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0015074;end_range=5091,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012477168.1;locus_tag=AD39_RS27435;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000042.1 RefSeq pseudogene 5085 5289 . - . ID=gene-AD39_RS29795;Name=AD39_RS29795;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29795;partial=true;pseudo=true;start_range=.,5085 NZ_JJLH01000042.1 Protein Homology CDS 5085 5289 . - 0 ID=cds-AD39_RS29795;Parent=gene-AD39_RS29795;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012477168.1;locus_tag=AD39_RS29795;partial=true;product=hypothetical protein;pseudo=true;start_range=.,5085;transl_table=11 NZ_JJLH01000042.1 RefSeq pseudogene 5327 5398 . + . ID=gene-AD39_RS29160;Name=AD39_RS29160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29160;partial=true;pseudo=true;start_range=.,5327 NZ_JJLH01000042.1 Protein Homology CDS 5327 5398 . + 0 ID=cds-AD39_RS29160;Parent=gene-AD39_RS29160;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF013446.6;locus_tag=AD39_RS29160;partial=true;product=hypothetical protein;pseudo=true;start_range=.,5327;transl_table=11 NZ_JJLH01000042.1 RefSeq pseudogene 5409 6104 . - . ID=gene-AD39_RS28640;Name=AD39_RS28640;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28640;pseudo=true NZ_JJLH01000042.1 Protein Homology CDS 5409 6104 . - 0 ID=cds-AD39_RS28640;Parent=gene-AD39_RS28640;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612230.1;locus_tag=AD39_RS28640;product=IS1 family transposase;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000043.1 1 643 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000043.1 RefSeq region 1 643 . + . ID=NZ_JJLH01000043.1:1..643;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000043.1 RefSeq gene 10 86 . - . ID=gene-AD39_RS09405;Name=AD39_RS09405;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS09405;old_locus_tag=AD39_3083 NZ_JJLH01000043.1 tRNAscan-SE tRNA 10 86 . - . ID=rna-AD39_RS09405;Parent=gene-AD39_RS09405;anticodon=(pos:complement(50..52));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09405;product=tRNA-Arg NZ_JJLH01000043.1 tRNAscan-SE exon 10 86 . - . ID=exon-AD39_RS09405-1;Parent=rna-AD39_RS09405;anticodon=(pos:complement(50..52));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09405;product=tRNA-Arg NZ_JJLH01000043.1 RefSeq gene 284 360 . - . ID=gene-AD39_RS09400;Name=AD39_RS09400;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS09400;old_locus_tag=AD39_3084 NZ_JJLH01000043.1 tRNAscan-SE tRNA 284 360 . - . ID=rna-AD39_RS09400;Parent=gene-AD39_RS09400;anticodon=(pos:complement(324..326));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09400;product=tRNA-Arg NZ_JJLH01000043.1 tRNAscan-SE exon 284 360 . - . ID=exon-AD39_RS09400-1;Parent=rna-AD39_RS09400;anticodon=(pos:complement(324..326));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09400;product=tRNA-Arg NZ_JJLH01000043.1 RefSeq gene 558 634 . - . ID=gene-AD39_RS09395;Name=AD39_RS09395;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS09395;old_locus_tag=AD39_3085 NZ_JJLH01000043.1 tRNAscan-SE tRNA 558 634 . - . ID=rna-AD39_RS09395;Parent=gene-AD39_RS09395;anticodon=(pos:complement(598..600));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09395;product=tRNA-Arg NZ_JJLH01000043.1 tRNAscan-SE exon 558 634 . - . ID=exon-AD39_RS09395-1;Parent=rna-AD39_RS09395;anticodon=(pos:complement(598..600));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09395;product=tRNA-Arg ##sequence-region NZ_JJLH01000044.1 1 22868 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000044.1 RefSeq region 1 22868 . + . ID=NZ_JJLH01000044.1:1..22868;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000044.1 RefSeq gene 4 701 . - . ID=gene-AD39_RS09390;Name=AD39_RS09390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS09390;old_locus_tag=AD39_3086 NZ_JJLH01000044.1 Protein Homology CDS 452 701 . - 0 ID=cds-WP_094096600.1;Parent=gene-AD39_RS09390;Dbxref=GenBank:WP_094096600.1;Name=WP_094096600.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1;locus_tag=AD39_RS09390;product=IS1-like element IS1A family transposase;protein_id=WP_094096600.1;transl_table=11 NZ_JJLH01000044.1 Protein Homology CDS 4 452 . - 2 ID=cds-WP_094096600.1;Parent=gene-AD39_RS09390;Dbxref=GenBank:WP_094096600.1;Name=WP_094096600.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1;locus_tag=AD39_RS09390;product=IS1-like element IS1A family transposase;protein_id=WP_094096600.1;transl_table=11 NZ_JJLH01000044.1 RefSeq pseudogene 1011 1279 . + . ID=gene-AD39_RS0125035;Name=AD39_RS0125035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125035;pseudo=true NZ_JJLH01000044.1 Protein Homology CDS 1011 1279 . + 0 ID=cds-AD39_RS0125035;Parent=gene-AD39_RS0125035;Note=frameshifted;Ontology_term=GO:0051983;gbkey=CDS;go_process=regulation of chromosome segregation|0051983||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017441118.1;locus_tag=AD39_RS0125035;product=type II toxin-antitoxin system ParD family antitoxin;pseudo=true;transl_table=11 NZ_JJLH01000044.1 RefSeq pseudogene 1266 1556 . + . ID=gene-AD39_RS29800;Name=AD39_RS29800;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29800;pseudo=true NZ_JJLH01000044.1 Protein Homology CDS 1266 1556 . + 0 ID=cds-AD39_RS29800;Parent=gene-AD39_RS29800;Note=internal stop;Ontology_term=GO:0090729,GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;go_function=toxin activity|0090729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001532579.1;locus_tag=AD39_RS29800;product=type II toxin-antitoxin system RelE/ParE family toxin;pseudo=true;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 1649 1804 . + . ID=gene-AD39_RS09380;Name=AD39_RS09380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS09380;old_locus_tag=AD39_3088 NZ_JJLH01000044.1 Protein Homology CDS 1649 1804 . + 0 ID=cds-WP_050439111.1;Parent=gene-AD39_RS09380;Dbxref=GenBank:WP_050439111.1;Name=WP_050439111.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001312821.1;locus_tag=AD39_RS09380;product=hypothetical protein;protein_id=WP_050439111.1;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 1925 2665 . + . ID=gene-AD39_RS09375;Name=AD39_RS09375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS09375;old_locus_tag=AD39_3089 NZ_JJLH01000044.1 Protein Homology CDS 1925 2665 . + 0 ID=cds-WP_032283492.1;Parent=gene-AD39_RS09375;Dbxref=GenBank:WP_032283492.1;Name=WP_032283492.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_052628.1;locus_tag=AD39_RS09375;product=tyrosine-type recombinase/integrase;protein_id=WP_032283492.1;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 2950 3927 . - . ID=gene-AD39_RS09370;Name=AD39_RS09370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS09370;old_locus_tag=AD39_3091 NZ_JJLH01000044.1 Protein Homology CDS 2950 3927 . - 0 ID=cds-WP_000361615.1;Parent=gene-AD39_RS09370;Dbxref=GenBank:WP_000361615.1;Name=WP_000361615.1;Ontology_term=GO:0006270,GO:0003887;gbkey=CDS;go_function=DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication initiation|0006270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_052630.2;locus_tag=AD39_RS09370;product=RepB family plasmid replication initiator protein;protein_id=WP_000361615.1;transl_table=11 NZ_JJLH01000044.1 RefSeq pseudogene 4673 5002 . + . ID=gene-AD39_RS09365;Name=AD39_RS09365;end_range=5002,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS09365;old_locus_tag=AD39_3092;partial=true;pseudo=true NZ_JJLH01000044.1 Protein Homology CDS 4673 5002 . + 0 ID=cds-AD39_RS09365;Parent=gene-AD39_RS09365;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=5002,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000952428.1;locus_tag=AD39_RS09365;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000044.1 RefSeq pseudogene 4995 5102 . + . ID=gene-AD39_RS29165;Name=AD39_RS29165;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29165;partial=true;pseudo=true;start_range=.,4995 NZ_JJLH01000044.1 Protein Homology CDS 4995 5102 . + 0 ID=cds-AD39_RS29165;Parent=gene-AD39_RS29165;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000544830.1;locus_tag=AD39_RS29165;partial=true;product=AAA family ATPase;pseudo=true;start_range=.,4995;transl_table=11 NZ_JJLH01000044.1 RefSeq pseudogene 5163 5676 . + . ID=gene-AD39_RS0125050;Name=AD39_RS0125050;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125050;partial=true;pseudo=true;start_range=.,5163 NZ_JJLH01000044.1 Protein Homology CDS 5163 5676 . + 0 ID=cds-AD39_RS0125050;Parent=gene-AD39_RS0125050;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001566943.1;locus_tag=AD39_RS0125050;partial=true;product=DUF4113 domain-containing protein;pseudo=true;start_range=.,5163;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 5856 6553 . - . ID=gene-AD39_RS09360;Name=AD39_RS09360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS09360;old_locus_tag=AD39_3094 NZ_JJLH01000044.1 Protein Homology CDS 6304 6553 . - 0 ID=cds-WP_223155668.1-4;Parent=gene-AD39_RS09360;Dbxref=GenBank:WP_223155668.1;Name=WP_223155668.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1;locus_tag=AD39_RS09360;product=IS1-like element IS1A family transposase;protein_id=WP_223155668.1;transl_table=11 NZ_JJLH01000044.1 Protein Homology CDS 5856 6304 . - 2 ID=cds-WP_223155668.1-4;Parent=gene-AD39_RS09360;Dbxref=GenBank:WP_223155668.1;Name=WP_223155668.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1;locus_tag=AD39_RS09360;product=IS1-like element IS1A family transposase;protein_id=WP_223155668.1;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 6909 7823 . + . ID=gene-AD39_RS09355;Name=sitA;gbkey=Gene;gene=sitA;gene_biotype=protein_coding;locus_tag=AD39_RS09355;old_locus_tag=AD39_3095 NZ_JJLH01000044.1 Protein Homology CDS 6909 7823 . + 0 ID=cds-WP_000949004.1;Parent=gene-AD39_RS09355;Dbxref=GenBank:WP_000949004.1;Name=WP_000949004.1;gbkey=CDS;gene=sitA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000949004.1;locus_tag=AD39_RS09355;product=iron/manganese ABC transporter substrate-binding protein SitA;protein_id=WP_000949004.1;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 7823 8650 . + . ID=gene-AD39_RS09350;Name=sitB;gbkey=Gene;gene=sitB;gene_biotype=protein_coding;locus_tag=AD39_RS09350;old_locus_tag=AD39_3096 NZ_JJLH01000044.1 Protein Homology CDS 7823 8650 . + 0 ID=cds-WP_000983710.1;Parent=gene-AD39_RS09350;Dbxref=GenBank:WP_000983710.1;Name=WP_000983710.1;gbkey=CDS;gene=sitB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707261.1;locus_tag=AD39_RS09350;product=iron/manganese ABC transporter ATP-binding protein SitB;protein_id=WP_000983710.1;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 8647 9504 . + . ID=gene-AD39_RS09345;Name=sitC;gbkey=Gene;gene=sitC;gene_biotype=protein_coding;locus_tag=AD39_RS09345;old_locus_tag=AD39_3097 NZ_JJLH01000044.1 Protein Homology CDS 8647 9504 . + 0 ID=cds-WP_001101723.1;Parent=gene-AD39_RS09345;Dbxref=GenBank:WP_001101723.1;Name=WP_001101723.1;gbkey=CDS;gene=sitC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707260.1;locus_tag=AD39_RS09345;product=iron/manganese ABC transporter permease subunit SitC;protein_id=WP_001101723.1;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 9501 10358 . + . ID=gene-AD39_RS09340;Name=sitD;gbkey=Gene;gene=sitD;gene_biotype=protein_coding;locus_tag=AD39_RS09340;old_locus_tag=AD39_3098 NZ_JJLH01000044.1 Protein Homology CDS 9501 10358 . + 0 ID=cds-WP_000968139.1;Parent=gene-AD39_RS09340;Dbxref=GenBank:WP_000968139.1;Name=WP_000968139.1;gbkey=CDS;gene=sitD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_032491457.1;locus_tag=AD39_RS09340;product=iron/manganese ABC transporter permease subunit SitD;protein_id=WP_000968139.1;transl_table=11 NZ_JJLH01000044.1 RefSeq pseudogene 10592 10840 . - . ID=gene-AD39_RS28650;Name=AD39_RS28650;end_range=10840,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28650;partial=true;pseudo=true NZ_JJLH01000044.1 Protein Homology CDS 10592 10840 . - 0 ID=cds-AD39_RS28650;Parent=gene-AD39_RS28650;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0004803;end_range=10840,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611787.1;locus_tag=AD39_RS28650;partial=true;product=Tn3 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000044.1 RefSeq pseudogene 10847 11260 . + . ID=gene-AD39_RS09335;Name=AD39_RS09335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS09335;old_locus_tag=AD39_3099;partial=true;pseudo=true;start_range=.,10847 NZ_JJLH01000044.1 Protein Homology CDS 10847 11260 . + 0 ID=cds-AD39_RS09335;Parent=gene-AD39_RS09335;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015377870.1;locus_tag=AD39_RS09335;partial=true;product=phosphopyruvate hydratase;pseudo=true;start_range=.,10847;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 11601 11981 . + . ID=gene-AD39_RS0125060;Name=crcB;gbkey=Gene;gene=crcB;gene_biotype=protein_coding;locus_tag=AD39_RS0125060 NZ_JJLH01000044.1 Protein Homology CDS 11601 11981 . + 0 ID=cds-WP_001318207.1;Parent=gene-AD39_RS0125060;Dbxref=GenBank:WP_001318207.1;Name=WP_001318207.1;Ontology_term=GO:0016020;gbkey=CDS;gene=crcB;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001318207.1;locus_tag=AD39_RS0125060;product=fluoride efflux transporter CrcB;protein_id=WP_001318207.1;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 12361 13554 . - . ID=gene-AD39_RS09330;Name=AD39_RS09330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS09330;old_locus_tag=AD39_3100 NZ_JJLH01000044.1 Protein Homology CDS 12361 13554 . - 0 ID=cds-WP_000095526.1;Parent=gene-AD39_RS09330;Dbxref=GenBank:WP_000095526.1;Name=WP_000095526.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709453.1;locus_tag=AD39_RS09330;product=MFS transporter;protein_id=WP_000095526.1;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 13690 15414 . + . ID=gene-AD39_RS09325;Name=iucA;gbkey=Gene;gene=iucA;gene_biotype=protein_coding;locus_tag=AD39_RS09325;old_locus_tag=AD39_3101 NZ_JJLH01000044.1 Protein Homology CDS 13690 15414 . + 0 ID=cds-WP_032221271.1;Parent=gene-AD39_RS09325;Dbxref=GenBank:WP_032221271.1;Name=WP_032221271.1;gbkey=CDS;gene=iucA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001314127.1;locus_tag=AD39_RS09325;product=aerobactin synthase IucA;protein_id=WP_032221271.1;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 15415 16362 . + . ID=gene-AD39_RS09320;Name=iucB;gbkey=Gene;gene=iucB;gene_biotype=protein_coding;locus_tag=AD39_RS09320;old_locus_tag=AD39_3102 NZ_JJLH01000044.1 Protein Homology CDS 15415 16362 . + 0 ID=cds-WP_000011910.1;Parent=gene-AD39_RS09320;Dbxref=GenBank:WP_000011910.1;Name=WP_000011910.1;gbkey=CDS;gene=iucB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709455.1;locus_tag=AD39_RS09320;product=N(6)-hydroxylysine O-acetyltransferase IucB;protein_id=WP_000011910.1;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 16362 18104 . + . ID=gene-AD39_RS09315;Name=iucC;gbkey=Gene;gene=iucC;gene_biotype=protein_coding;locus_tag=AD39_RS09315;old_locus_tag=AD39_3103 NZ_JJLH01000044.1 Protein Homology CDS 16362 18104 . + 0 ID=cds-WP_032287603.1;Parent=gene-AD39_RS09315;Dbxref=GenBank:WP_032287603.1;Name=WP_032287603.1;gbkey=CDS;gene=iucC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709456.1;locus_tag=AD39_RS09315;product=NIS family aerobactin synthetase IucC;protein_id=WP_032287603.1;transl_table=11 NZ_JJLH01000044.1 RefSeq pseudogene 18101 19434 . + . ID=gene-AD39_RS09310;Name=iucD;gbkey=Gene;gene=iucD;gene_biotype=pseudogene;locus_tag=AD39_RS09310;old_locus_tag=AD39_3104;pseudo=true NZ_JJLH01000044.1 Protein Homology CDS 18101 19434 . + 0 ID=cds-AD39_RS09310;Parent=gene-AD39_RS09310;Note=frameshifted;gbkey=CDS;gene=iucD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016528830.1;locus_tag=AD39_RS09310;product=NADPH-dependent L-lysine N(6)-monooxygenase IucD;pseudo=true;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 19460 21661 . + . ID=gene-AD39_RS09305;Name=iutA;gbkey=Gene;gene=iutA;gene_biotype=protein_coding;locus_tag=AD39_RS09305;old_locus_tag=AD39_3105 NZ_JJLH01000044.1 Protein Homology CDS 19460 21661 . + 0 ID=cds-WP_000973520.1;Parent=gene-AD39_RS09305;Dbxref=GenBank:WP_000973520.1;Name=WP_000973520.1;gbkey=CDS;gene=iutA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004213924.1;locus_tag=AD39_RS09305;product=ferric aerobactin receptor IutA;protein_id=WP_000973520.1;transl_table=11 NZ_JJLH01000044.1 RefSeq gene 22168 22865 . + . ID=gene-AD39_RS09300;Name=AD39_RS09300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS09300;old_locus_tag=AD39_3106 NZ_JJLH01000044.1 Protein Homology CDS 22168 22417 . + 0 ID=cds-WP_223155668.1-5;Parent=gene-AD39_RS09300;Dbxref=GenBank:WP_223155668.1;Name=WP_223155668.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1;locus_tag=AD39_RS09300;product=IS1-like element IS1A family transposase;protein_id=WP_223155668.1;transl_table=11 NZ_JJLH01000044.1 Protein Homology CDS 22417 22865 . + 2 ID=cds-WP_223155668.1-5;Parent=gene-AD39_RS09300;Dbxref=GenBank:WP_223155668.1;Name=WP_223155668.1;Note=programmed frameshift;Ontology_term=GO:0006313,GO:0004803;exception=ribosomal slippage;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1;locus_tag=AD39_RS09300;product=IS1-like element IS1A family transposase;protein_id=WP_223155668.1;transl_table=11 ##sequence-region NZ_JJLH01000045.1 1 697628 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000045.1 RefSeq region 1 697628 . + . ID=NZ_JJLH01000045.1:1..697628;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000045.1 RefSeq gene 1 374 . + . ID=gene-AD39_RS09295;Name=AD39_RS09295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS09295;old_locus_tag=AD39_3107;partial=true;start_range=.,1 NZ_JJLH01000045.1 Protein Homology CDS 1 374 . + 2 ID=cds-WP_032287604.1;Parent=gene-AD39_RS09295;Dbxref=GenBank:WP_032287604.1;Name=WP_032287604.1;Ontology_term=GO:0008483,GO:0030170;gbkey=CDS;go_function=transaminase activity|0008483||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311550.1;locus_tag=AD39_RS09295;partial=true;product=aminotransferase class III-fold pyridoxal phosphate-dependent enzyme;protein_id=WP_032287604.1;start_range=.,1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 685 2085 . + . ID=gene-AD39_RS09290;Name=gabP;gbkey=Gene;gene=gabP;gene_biotype=protein_coding;locus_tag=AD39_RS09290;old_locus_tag=AD39_3108 NZ_JJLH01000045.1 Protein Homology CDS 685 2085 . + 0 ID=cds-WP_032283477.1;Parent=gene-AD39_RS09290;Dbxref=GenBank:WP_032283477.1;Name=WP_032283477.1;Ontology_term=GO:0006865,GO:0015185,GO:0016020;gbkey=CDS;gene=gabP;go_component=membrane|0016020||IEA;go_function=gamma-aminobutyric acid transmembrane transporter activity|0015185||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417149.1;locus_tag=AD39_RS09290;product=GABA permease;protein_id=WP_032283477.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 2106 2768 . + . ID=gene-AD39_RS09285;Name=csiR;gbkey=Gene;gene=csiR;gene_biotype=protein_coding;locus_tag=AD39_RS09285;old_locus_tag=AD39_3109 NZ_JJLH01000045.1 Protein Homology CDS 2106 2768 . + 0 ID=cds-WP_000156811.1;Parent=gene-AD39_RS09285;Dbxref=GenBank:WP_000156811.1;Name=WP_000156811.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=csiR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311552.2;locus_tag=AD39_RS09285;product=DNA-binding transcriptional regulator CsiR;protein_id=WP_000156811.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 2769 3218 . - . ID=gene-AD39_RS09280;Name=kbp;gbkey=Gene;gene=kbp;gene_biotype=protein_coding;locus_tag=AD39_RS09280;old_locus_tag=AD39_3110 NZ_JJLH01000045.1 Protein Homology CDS 2769 3218 . - 0 ID=cds-WP_000522424.1;Parent=gene-AD39_RS09280;Dbxref=GenBank:WP_000522424.1;Name=WP_000522424.1;gbkey=CDS;gene=kbp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311553.1;locus_tag=AD39_RS09280;product=potassium binding protein Kbp;protein_id=WP_000522424.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 3302 3460 . - . ID=gene-AD39_RS09275;Name=yqaE;gbkey=Gene;gene=yqaE;gene_biotype=protein_coding;locus_tag=AD39_RS09275;old_locus_tag=AD39_3111 NZ_JJLH01000045.1 Protein Homology CDS 3302 3460 . - 0 ID=cds-WP_000508177.1;Parent=gene-AD39_RS09275;Dbxref=GenBank:WP_000508177.1;Name=WP_000508177.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yqaE;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311554.1;locus_tag=AD39_RS09275;product=YqaE/Pmp3 family membrane protein;protein_id=WP_000508177.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 3643 3942 . + . ID=gene-AD39_RS09270;Name=ygaV;gbkey=Gene;gene=ygaV;gene_biotype=protein_coding;locus_tag=AD39_RS09270;old_locus_tag=AD39_3112 NZ_JJLH01000045.1 Protein Homology CDS 3643 3942 . + 0 ID=cds-WP_000137280.1;Parent=gene-AD39_RS09270;Dbxref=GenBank:WP_000137280.1;Name=WP_000137280.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=ygaV;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417153.1;locus_tag=AD39_RS09270;product=ArsR/SmtB family transcription factor;protein_id=WP_000137280.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 3952 4476 . + . ID=gene-AD39_RS09265;Name=ygaP;gbkey=Gene;gene=ygaP;gene_biotype=protein_coding;locus_tag=AD39_RS09265;old_locus_tag=AD39_3113 NZ_JJLH01000045.1 Protein Homology CDS 3952 4476 . + 0 ID=cds-WP_001229468.1;Parent=gene-AD39_RS09265;Dbxref=GenBank:WP_001229468.1;Name=WP_001229468.1;gbkey=CDS;gene=ygaP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001461399.1;locus_tag=AD39_RS09265;product=thiosulfate sulfurtransferase YgaP;protein_id=WP_001229468.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 4523 4927 . - . ID=gene-AD39_RS09260;Name=stpA;gbkey=Gene;gene=stpA;gene_biotype=protein_coding;locus_tag=AD39_RS09260;old_locus_tag=AD39_3114 NZ_JJLH01000045.1 Protein Homology CDS 4523 4927 . - 0 ID=cds-WP_000115383.1;Parent=gene-AD39_RS09260;Dbxref=GenBank:WP_000115383.1;Name=WP_000115383.1;gbkey=CDS;gene=stpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311557.1;locus_tag=AD39_RS09260;product=DNA-binding protein StpA;protein_id=WP_000115383.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 5595 6044 . + . ID=gene-AD39_RS09255;Name=alaE;gbkey=Gene;gene=alaE;gene_biotype=protein_coding;locus_tag=AD39_RS09255;old_locus_tag=AD39_3116 NZ_JJLH01000045.1 Protein Homology CDS 5595 6044 . + 0 ID=cds-WP_000492656.1;Parent=gene-AD39_RS09255;Dbxref=GenBank:WP_000492656.1;Name=WP_000492656.1;gbkey=CDS;gene=alaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311558.1;locus_tag=AD39_RS09255;product=L-alanine exporter AlaE;protein_id=WP_000492656.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 6081 6425 . - . ID=gene-AD39_RS09250;Name=ygaC;gbkey=Gene;gene=ygaC;gene_biotype=protein_coding;locus_tag=AD39_RS09250;old_locus_tag=AD39_3117 NZ_JJLH01000045.1 Protein Homology CDS 6081 6425 . - 0 ID=cds-WP_000281320.1;Parent=gene-AD39_RS09250;Dbxref=GenBank:WP_000281320.1;Name=WP_000281320.1;gbkey=CDS;gene=ygaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311559.1;locus_tag=AD39_RS09250;product=DUF2002 family protein;protein_id=WP_000281320.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 6577 6906 . + . ID=gene-AD39_RS09245;Name=ygaM;gbkey=Gene;gene=ygaM;gene_biotype=protein_coding;locus_tag=AD39_RS09245;old_locus_tag=AD39_3118 NZ_JJLH01000045.1 Protein Homology CDS 6577 6906 . + 0 ID=cds-WP_001295174.1;Parent=gene-AD39_RS09245;Dbxref=GenBank:WP_001295174.1;Name=WP_001295174.1;gbkey=CDS;gene=ygaM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311560.2;locus_tag=AD39_RS09245;product=DUF883 domain-containing protein;protein_id=WP_001295174.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 7154 7399 . + . ID=gene-AD39_RS09240;Name=nrdH;gbkey=Gene;gene=nrdH;gene_biotype=protein_coding;locus_tag=AD39_RS09240;old_locus_tag=AD39_3119 NZ_JJLH01000045.1 Protein Homology CDS 7154 7399 . + 0 ID=cds-WP_001223227.1;Parent=gene-AD39_RS09240;Dbxref=GenBank:WP_001223227.1;Name=WP_001223227.1;gbkey=CDS;gene=nrdH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311563.1;locus_tag=AD39_RS09240;product=glutaredoxin-like protein NrdH;protein_id=WP_001223227.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 7396 7806 . + . ID=gene-AD39_RS09235;Name=nrdI;gbkey=Gene;gene=nrdI;gene_biotype=protein_coding;locus_tag=AD39_RS09235;old_locus_tag=AD39_3120 NZ_JJLH01000045.1 Protein Homology CDS 7396 7806 . + 0 ID=cds-WP_001474544.1;Parent=gene-AD39_RS09235;Dbxref=GenBank:WP_001474544.1;Name=WP_001474544.1;Ontology_term=GO:0009263,GO:0036211,GO:0010181;gbkey=CDS;gene=nrdI;go_function=FMN binding|0010181||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA,protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311564.1;locus_tag=AD39_RS09235;product=class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI;protein_id=WP_001474544.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 7779 9923 . + . ID=gene-AD39_RS09230;Name=nrdE;gbkey=Gene;gene=nrdE;gene_biotype=protein_coding;locus_tag=AD39_RS09230;old_locus_tag=AD39_3121 NZ_JJLH01000045.1 Protein Homology CDS 7779 9923 . + 0 ID=cds-WP_000246543.1;Parent=gene-AD39_RS09230;Dbxref=GenBank:WP_000246543.1;Name=WP_000246543.1;Ontology_term=GO:0006260,GO:0004748,GO:0005524;gbkey=CDS;gene=nrdE;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311565.1;locus_tag=AD39_RS09230;product=class 1b ribonucleoside-diphosphate reductase subunit alpha;protein_id=WP_000246543.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 9933 10892 . + . ID=gene-AD39_RS09225;Name=nrdF;gbkey=Gene;gene=nrdF;gene_biotype=protein_coding;locus_tag=AD39_RS09225;old_locus_tag=AD39_3122 NZ_JJLH01000045.1 Protein Homology CDS 9933 10892 . + 0 ID=cds-WP_000777969.1;Parent=gene-AD39_RS09225;Dbxref=GenBank:WP_000777969.1;Name=WP_000777969.1;Ontology_term=GO:0009263,GO:0004748,GO:0005971;gbkey=CDS;gene=nrdF;go_component=ribonucleoside-diphosphate reductase complex|0005971||IEA;go_function=ribonucleoside-diphosphate reductase activity%2C thioredoxin disulfide as acceptor|0004748||IEA;go_process=deoxyribonucleotide biosynthetic process|0009263||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417162.1;locus_tag=AD39_RS09225;product=class 1b ribonucleoside-diphosphate reductase subunit beta;protein_id=WP_000777969.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 11247 12449 . + . ID=gene-AD39_RS09220;Name=proV;gbkey=Gene;gene=proV;gene_biotype=protein_coding;locus_tag=AD39_RS09220;old_locus_tag=AD39_3123 NZ_JJLH01000045.1 Protein Homology CDS 11247 12449 . + 0 ID=cds-WP_000985494.1;Parent=gene-AD39_RS09220;Dbxref=GenBank:WP_000985494.1;Name=WP_000985494.1;Ontology_term=GO:0031460,GO:0005524;gbkey=CDS;gene=proV;go_function=ATP binding|0005524||IEA;go_process=glycine betaine transport|0031460||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417163.1;locus_tag=AD39_RS09220;product=glycine betaine/L-proline ABC transporter ATP-binding protein ProV;protein_id=WP_000985494.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 12442 13506 . + . ID=gene-AD39_RS09215;Name=proW;gbkey=Gene;gene=proW;gene_biotype=protein_coding;locus_tag=AD39_RS09215;old_locus_tag=AD39_3124 NZ_JJLH01000045.1 Protein Homology CDS 12442 13506 . + 0 ID=cds-WP_000774996.1;Parent=gene-AD39_RS09215;Dbxref=GenBank:WP_000774996.1;Name=WP_000774996.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=proW;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311568.1;locus_tag=AD39_RS09215;product=glycine betaine/L-proline ABC transporter permease ProW;protein_id=WP_000774996.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 13563 14555 . + . ID=gene-AD39_RS09210;Name=proX;gbkey=Gene;gene=proX;gene_biotype=protein_coding;locus_tag=AD39_RS09210;old_locus_tag=AD39_3125 NZ_JJLH01000045.1 Protein Homology CDS 13563 14555 . + 0 ID=cds-WP_001216527.1;Parent=gene-AD39_RS09210;Dbxref=GenBank:WP_001216527.1;Name=WP_001216527.1;Ontology_term=GO:0055085,GO:0022857,GO:0043190;gbkey=CDS;gene=proX;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708493.2;locus_tag=AD39_RS09210;product=glycine betaine/L-proline ABC transporter substrate-binding protein ProX;protein_id=WP_001216527.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 14846 16030 . + . ID=gene-AD39_RS09205;Name=AD39_RS09205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS09205;old_locus_tag=AD39_3127 NZ_JJLH01000045.1 Protein Homology CDS 14846 16030 . + 0 ID=cds-WP_000165699.1;Parent=gene-AD39_RS09205;Dbxref=GenBank:WP_000165699.1;Name=WP_000165699.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886,GO:0016020;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311570.1;locus_tag=AD39_RS09205;product=MFS transporter;protein_id=WP_000165699.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 16154 16891 . + . ID=gene-AD39_RS09200;Name=ygaZ;gbkey=Gene;gene=ygaZ;gene_biotype=protein_coding;locus_tag=AD39_RS09200;old_locus_tag=AD39_3128 NZ_JJLH01000045.1 Protein Homology CDS 16154 16891 . + 0 ID=cds-WP_000445658.1;Parent=gene-AD39_RS09200;Dbxref=GenBank:WP_000445658.1;Name=WP_000445658.1;gbkey=CDS;gene=ygaZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311571.1;locus_tag=AD39_RS09200;product=L-valine exporter subunit YgaZ;protein_id=WP_000445658.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 16881 17216 . + . ID=gene-AD39_RS09195;Name=ygaH;gbkey=Gene;gene=ygaH;gene_biotype=protein_coding;locus_tag=AD39_RS09195;old_locus_tag=AD39_3129 NZ_JJLH01000045.1 Protein Homology CDS 16881 17216 . + 0 ID=cds-WP_000119763.1;Parent=gene-AD39_RS09195;Dbxref=GenBank:WP_000119763.1;Name=WP_000119763.1;gbkey=CDS;gene=ygaH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417168.1;locus_tag=AD39_RS09195;product=L-valine transporter subunit YgaH;protein_id=WP_000119763.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 17307 17837 . + . ID=gene-AD39_RS09190;Name=emrR;gbkey=Gene;gene=emrR;gene_biotype=protein_coding;locus_tag=AD39_RS09190;old_locus_tag=AD39_3130 NZ_JJLH01000045.1 Protein Homology CDS 17307 17837 . + 0 ID=cds-WP_000378442.1;Parent=gene-AD39_RS09190;Dbxref=GenBank:WP_000378442.1;Name=WP_000378442.1;gbkey=CDS;gene=emrR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311573.1;locus_tag=AD39_RS09190;product=multidrug efflux transporter EmrAB transcriptional repressor EmrR;protein_id=WP_000378442.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 17964 19136 . + . ID=gene-AD39_RS09185;Name=emrA;gbkey=Gene;gene=emrA;gene_biotype=protein_coding;locus_tag=AD39_RS09185;old_locus_tag=AD39_3132 NZ_JJLH01000045.1 Protein Homology CDS 17964 19136 . + 0 ID=cds-WP_032254508.1;Parent=gene-AD39_RS09185;Dbxref=GenBank:WP_032254508.1;Name=WP_032254508.1;gbkey=CDS;gene=emrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311574.1;locus_tag=AD39_RS09185;product=multidrug efflux MFS transporter periplasmic adaptor subunit EmrA;protein_id=WP_032254508.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 19153 20691 . + . ID=gene-AD39_RS09180;Name=emrB;gbkey=Gene;gene=emrB;gene_biotype=protein_coding;locus_tag=AD39_RS09180;old_locus_tag=AD39_3133 NZ_JJLH01000045.1 Protein Homology CDS 19153 20691 . + 0 ID=cds-WP_001333029.1;Parent=gene-AD39_RS09180;Dbxref=GenBank:WP_001333029.1;Name=WP_001333029.1;gbkey=CDS;gene=emrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311575.1;locus_tag=AD39_RS09180;product=multidrug efflux MFS transporter permease subunit EmrB;protein_id=WP_001333029.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 20755 21270 . - . ID=gene-AD39_RS09175;Name=luxS;gbkey=Gene;gene=luxS;gene_biotype=protein_coding;locus_tag=AD39_RS09175;old_locus_tag=AD39_3134 NZ_JJLH01000045.1 Protein Homology CDS 20755 21270 . - 0 ID=cds-WP_001130210.1;Parent=gene-AD39_RS09175;Dbxref=GenBank:WP_001130210.1;Name=WP_001130210.1;gbkey=CDS;gene=luxS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008458247.1;locus_tag=AD39_RS09175;product=S-ribosylhomocysteine lyase;protein_id=WP_001130210.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 21420 22976 . - . ID=gene-AD39_RS09170;Name=gshA;gbkey=Gene;gene=gshA;gene_biotype=protein_coding;locus_tag=AD39_RS09170;old_locus_tag=AD39_3135 NZ_JJLH01000045.1 Protein Homology CDS 21420 22976 . - 0 ID=cds-WP_023155426.1;Parent=gene-AD39_RS09170;Dbxref=GenBank:WP_023155426.1;Name=WP_023155426.1;Ontology_term=GO:0006750,GO:0004357;gbkey=CDS;gene=gshA;go_function=glutamate-cysteine ligase activity|0004357||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417173.1;locus_tag=AD39_RS09170;product=glutamate--cysteine ligase;protein_id=WP_023155426.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 23049 23477 . - . ID=gene-AD39_RS09165;Name=yqaA;gbkey=Gene;gene=yqaA;gene_biotype=protein_coding;locus_tag=AD39_RS09165;old_locus_tag=AD39_3136 NZ_JJLH01000045.1 Protein Homology CDS 23049 23477 . - 0 ID=cds-WP_001287454.1;Parent=gene-AD39_RS09165;Dbxref=GenBank:WP_001287454.1;Name=WP_001287454.1;Ontology_term=GO:0005886;gbkey=CDS;gene=yqaA;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417174.1;locus_tag=AD39_RS09165;product=YqaA family protein;protein_id=WP_001287454.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 23474 24040 . - . ID=gene-AD39_RS09160;Name=yqaB;gbkey=Gene;gene=yqaB;gene_biotype=protein_coding;locus_tag=AD39_RS09160;old_locus_tag=AD39_3137 NZ_JJLH01000045.1 Protein Homology CDS 23474 24040 . - 0 ID=cds-WP_000273290.1;Parent=gene-AD39_RS09160;Dbxref=GenBank:WP_000273290.1;Name=WP_000273290.1;gbkey=CDS;gene=yqaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417175.1;locus_tag=AD39_RS09160;product=fructose-1-phosphate/6-phosphogluconate phosphatase;protein_id=WP_000273290.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 24321 24397 . - . ID=gene-AD39_RS09155;Name=AD39_RS09155;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS09155;old_locus_tag=AD39_3138 NZ_JJLH01000045.1 tRNAscan-SE tRNA 24321 24397 . - . ID=rna-AD39_RS09155;Parent=gene-AD39_RS09155;anticodon=(pos:complement(24361..24363));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09155;product=tRNA-Arg NZ_JJLH01000045.1 tRNAscan-SE exon 24321 24397 . - . ID=exon-AD39_RS09155-1;Parent=rna-AD39_RS09155;anticodon=(pos:complement(24361..24363));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09155;product=tRNA-Arg NZ_JJLH01000045.1 RefSeq gene 24596 24672 . - . ID=gene-AD39_RS09150;Name=AD39_RS09150;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS09150;old_locus_tag=AD39_3139 NZ_JJLH01000045.1 tRNAscan-SE tRNA 24596 24672 . - . ID=rna-AD39_RS09150;Parent=gene-AD39_RS09150;anticodon=(pos:complement(24636..24638));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09150;product=tRNA-Arg NZ_JJLH01000045.1 tRNAscan-SE exon 24596 24672 . - . ID=exon-AD39_RS09150-1;Parent=rna-AD39_RS09150;anticodon=(pos:complement(24636..24638));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09150;product=tRNA-Arg NZ_JJLH01000045.1 RefSeq gene 24871 24947 . - . ID=gene-AD39_RS09145;Name=AD39_RS09145;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS09145;old_locus_tag=AD39_3140 NZ_JJLH01000045.1 tRNAscan-SE tRNA 24871 24947 . - . ID=rna-AD39_RS09145;Parent=gene-AD39_RS09145;anticodon=(pos:complement(24911..24913));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09145;product=tRNA-Arg NZ_JJLH01000045.1 tRNAscan-SE exon 24871 24947 . - . ID=exon-AD39_RS09145-1;Parent=rna-AD39_RS09145;anticodon=(pos:complement(24911..24913));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09145;product=tRNA-Arg NZ_JJLH01000045.1 RefSeq gene 25147 25223 . - . ID=gene-AD39_RS09140;Name=AD39_RS09140;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS09140;old_locus_tag=AD39_3141 NZ_JJLH01000045.1 tRNAscan-SE tRNA 25147 25223 . - . ID=rna-AD39_RS09140;Parent=gene-AD39_RS09140;anticodon=(pos:complement(25187..25189));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09140;product=tRNA-Arg NZ_JJLH01000045.1 tRNAscan-SE exon 25147 25223 . - . ID=exon-AD39_RS09140-1;Parent=rna-AD39_RS09140;anticodon=(pos:complement(25187..25189));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09140;product=tRNA-Arg NZ_JJLH01000045.1 RefSeq gene 25423 25499 . - . ID=gene-AD39_RS09135;Name=AD39_RS09135;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS09135;old_locus_tag=AD39_3142 NZ_JJLH01000045.1 tRNAscan-SE tRNA 25423 25499 . - . ID=rna-AD39_RS09135;Parent=gene-AD39_RS09135;anticodon=(pos:complement(25463..25465));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09135;product=tRNA-Arg NZ_JJLH01000045.1 tRNAscan-SE exon 25423 25499 . - . ID=exon-AD39_RS09135-1;Parent=rna-AD39_RS09135;anticodon=(pos:complement(25463..25465));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09135;product=tRNA-Arg NZ_JJLH01000045.1 RefSeq gene 25503 25595 . - . ID=gene-AD39_RS09130;Name=AD39_RS09130;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS09130;old_locus_tag=AD39_3143 NZ_JJLH01000045.1 tRNAscan-SE tRNA 25503 25595 . - . ID=rna-AD39_RS09130;Parent=gene-AD39_RS09130;anticodon=(pos:complement(25559..25561));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09130;product=tRNA-Ser NZ_JJLH01000045.1 tRNAscan-SE exon 25503 25595 . - . ID=exon-AD39_RS09130-1;Parent=rna-AD39_RS09130;anticodon=(pos:complement(25559..25561));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS09130;product=tRNA-Ser NZ_JJLH01000045.1 RefSeq gene 25912 26097 . - . ID=gene-AD39_RS09125;Name=csrA;gbkey=Gene;gene=csrA;gene_biotype=protein_coding;locus_tag=AD39_RS09125;old_locus_tag=AD39_3144 NZ_JJLH01000045.1 Protein Homology CDS 25912 26097 . - 0 ID=cds-WP_000906486.1;Parent=gene-AD39_RS09125;Dbxref=GenBank:WP_000906486.1;Name=WP_000906486.1;gbkey=CDS;gene=csrA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001774971.1;locus_tag=AD39_RS09125;product=carbon storage regulator CsrA;protein_id=WP_000906486.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 26332 28962 . - . ID=gene-AD39_RS09120;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;locus_tag=AD39_RS09120;old_locus_tag=AD39_3146 NZ_JJLH01000045.1 Protein Homology CDS 26332 28962 . - 0 ID=cds-WP_024166692.1;Parent=gene-AD39_RS09120;Dbxref=GenBank:WP_024166692.1;Name=WP_024166692.1;Ontology_term=GO:0006419,GO:0000166,GO:0004813,GO:0005737;gbkey=CDS;gene=alaS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,alanine-tRNA ligase activity|0004813||IEA;go_process=alanyl-tRNA aminoacylation|0006419||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417177.1;locus_tag=AD39_RS09120;product=alanine--tRNA ligase;protein_id=WP_024166692.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 29090 29590 . - . ID=gene-AD39_RS09110;Name=recX;gbkey=Gene;gene=recX;gene_biotype=protein_coding;locus_tag=AD39_RS09110;old_locus_tag=AD39_3148 NZ_JJLH01000045.1 Protein Homology CDS 29090 29590 . - 0 ID=cds-WP_000140506.1;Parent=gene-AD39_RS09110;Dbxref=GenBank:WP_000140506.1;Name=WP_000140506.1;gbkey=CDS;gene=recX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311582.1;locus_tag=AD39_RS09110;product=recombination regulator RecX;protein_id=WP_000140506.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 29833 30894 . - . ID=gene-AD39_RS09105;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=AD39_RS09105;old_locus_tag=AD39_3149 NZ_JJLH01000045.1 Protein Homology CDS 29833 30894 . - 0 ID=cds-WP_000963143.1;Parent=gene-AD39_RS09105;Dbxref=GenBank:WP_000963143.1;Name=WP_000963143.1;Ontology_term=GO:0006281,GO:0003677,GO:0003697,GO:0005524,GO:0008094;gbkey=CDS;gene=recA;go_function=DNA binding|0003677||IEA,single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA,ATP-dependent activity%2C acting on DNA|0008094||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311583.1;locus_tag=AD39_RS09105;product=recombinase RecA;protein_id=WP_000963143.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 30974 31471 . - . ID=gene-AD39_RS09100;Name=pncC;gbkey=Gene;gene=pncC;gene_biotype=protein_coding;locus_tag=AD39_RS09100;old_locus_tag=AD39_3150 NZ_JJLH01000045.1 Protein Homology CDS 30974 31471 . - 0 ID=cds-WP_000132231.1;Parent=gene-AD39_RS09100;Dbxref=GenBank:WP_000132231.1;Name=WP_000132231.1;gbkey=CDS;gene=pncC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417180.1;locus_tag=AD39_RS09100;product=nicotinamide-nucleotide amidase;protein_id=WP_000132231.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 31616 32701 . - . ID=gene-AD39_RS09095;Name=mltB;gbkey=Gene;gene=mltB;gene_biotype=protein_coding;locus_tag=AD39_RS09095;old_locus_tag=AD39_3151 NZ_JJLH01000045.1 Protein Homology CDS 31616 32701 . - 0 ID=cds-WP_023156038.1;Parent=gene-AD39_RS09095;Dbxref=GenBank:WP_023156038.1;Name=WP_023156038.1;gbkey=CDS;gene=mltB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417181.1;locus_tag=AD39_RS09095;product=lytic murein transglycosylase B;protein_id=WP_023156038.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 32957 33520 . + . ID=gene-AD39_RS09090;Name=srlA;gbkey=Gene;gene=srlA;gene_biotype=protein_coding;locus_tag=AD39_RS09090;old_locus_tag=AD39_3152 NZ_JJLH01000045.1 Protein Homology CDS 32957 33520 . + 0 ID=cds-WP_000573321.1;Parent=gene-AD39_RS09090;Dbxref=GenBank:WP_000573321.1;Name=WP_000573321.1;Ontology_term=GO:0009401,GO:0015795;gbkey=CDS;gene=srlA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,sorbitol transmembrane transport|0015795||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026180.1;locus_tag=AD39_RS09090;product=PTS glucitol/sorbitol transporter subunit IIC;protein_id=WP_000573321.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 33517 34476 . + . ID=gene-AD39_RS09085;Name=srlE;gbkey=Gene;gene=srlE;gene_biotype=protein_coding;locus_tag=AD39_RS09085;old_locus_tag=AD39_3153 NZ_JJLH01000045.1 Protein Homology CDS 33517 34476 . + 0 ID=cds-WP_000148875.1;Parent=gene-AD39_RS09085;Dbxref=GenBank:WP_000148875.1;Name=WP_000148875.1;Ontology_term=GO:0009401,GO:0015795,GO:0008982,GO:0016301;gbkey=CDS;gene=srlE;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,kinase activity|0016301||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,sorbitol transmembrane transport|0015795||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026181.1;locus_tag=AD39_RS09085;product=PTS glucitol/sorbitol transporter subunit IIB;protein_id=WP_000148875.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 34487 34858 . + . ID=gene-AD39_RS09080;Name=srlB;gbkey=Gene;gene=srlB;gene_biotype=protein_coding;gene_synonym=gutB;locus_tag=AD39_RS09080;old_locus_tag=AD39_3154 NZ_JJLH01000045.1 Protein Homology CDS 34487 34858 . + 0 ID=cds-WP_000216194.1;Parent=gene-AD39_RS09080;Dbxref=GenBank:WP_000216194.1;Name=WP_000216194.1;gbkey=CDS;gene=srlB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417184.1;locus_tag=AD39_RS09080;product=PTS glucitol/sorbitol transporter subunit IIA;protein_id=WP_000216194.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 34862 35641 . + . ID=gene-AD39_RS09075;Name=srlD;gbkey=Gene;gene=srlD;gene_biotype=protein_coding;locus_tag=AD39_RS09075;old_locus_tag=AD39_3155 NZ_JJLH01000045.1 Protein Homology CDS 34862 35641 . + 0 ID=cds-WP_001077358.1;Parent=gene-AD39_RS09075;Dbxref=GenBank:WP_001077358.1;Name=WP_001077358.1;Ontology_term=GO:0016491;gbkey=CDS;gene=srlD;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417185.1;locus_tag=AD39_RS09075;product=sorbitol-6-phosphate dehydrogenase;protein_id=WP_001077358.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 35746 36105 . + . ID=gene-AD39_RS09070;Name=gutM;gbkey=Gene;gene=gutM;gene_biotype=protein_coding;locus_tag=AD39_RS09070;old_locus_tag=AD39_3156 NZ_JJLH01000045.1 Protein Homology CDS 35746 36105 . + 0 ID=cds-WP_000252908.1;Parent=gene-AD39_RS09070;Dbxref=GenBank:WP_000252908.1;Name=WP_000252908.1;gbkey=CDS;gene=gutM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417186.1;locus_tag=AD39_RS09070;product=transcriptional regulator GutM;protein_id=WP_000252908.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 36172 36945 . + . ID=gene-AD39_RS09065;Name=srlR;gbkey=Gene;gene=srlR;gene_biotype=protein_coding;gene_synonym=gutR;locus_tag=AD39_RS09065;old_locus_tag=AD39_3157 NZ_JJLH01000045.1 Protein Homology CDS 36172 36945 . + 0 ID=cds-WP_000804546.1;Parent=gene-AD39_RS09065;Dbxref=GenBank:WP_000804546.1;Name=WP_000804546.1;Ontology_term=GO:0045892,GO:0003700;gbkey=CDS;gene=srlR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417187.1;locus_tag=AD39_RS09065;product=glucitol operon DNA-binding transcriptional repressor SrlR;protein_id=WP_000804546.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 36938 37903 . + . ID=gene-AD39_RS09060;Name=gutQ;gbkey=Gene;gene=gutQ;gene_biotype=protein_coding;locus_tag=AD39_RS09060;old_locus_tag=AD39_3158 NZ_JJLH01000045.1 Protein Homology CDS 36938 37903 . + 0 ID=cds-WP_001287415.1;Parent=gene-AD39_RS09060;Dbxref=GenBank:WP_001287415.1;Name=WP_001287415.1;gbkey=CDS;gene=gutQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311591.2;locus_tag=AD39_RS09060;product=arabinose-5-phosphate isomerase GutQ;protein_id=WP_001287415.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 37900 39414 . - . ID=gene-AD39_RS09055;Name=norR;gbkey=Gene;gene=norR;gene_biotype=protein_coding;locus_tag=AD39_RS09055;old_locus_tag=AD39_3159 NZ_JJLH01000045.1 Protein Homology CDS 37900 39414 . - 0 ID=cds-WP_032283478.1;Parent=gene-AD39_RS09055;Dbxref=GenBank:WP_032283478.1;Name=WP_032283478.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=norR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311592.2;locus_tag=AD39_RS09055;product=nitric oxide reductase transcriptional regulator NorR;protein_id=WP_032283478.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 39601 41040 . + . ID=gene-AD39_RS09050;Name=norV;gbkey=Gene;gene=norV;gene_biotype=protein_coding;locus_tag=AD39_RS09050;old_locus_tag=AD39_3160 NZ_JJLH01000045.1 Protein Homology CDS 39601 41040 . + 0 ID=cds-WP_000029625.1;Parent=gene-AD39_RS09050;Dbxref=GenBank:WP_000029625.1;Name=WP_000029625.1;Ontology_term=GO:0009055,GO:0010181,GO:0016966,GO:0046872;gbkey=CDS;gene=norV;go_function=electron transfer activity|0009055||IEA,FMN binding|0010181||IEA,nitric oxide reductase activity|0016966||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417190.1;locus_tag=AD39_RS09050;product=anaerobic nitric oxide reductase flavorubredoxin;protein_id=WP_000029625.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 41037 42170 . + . ID=gene-AD39_RS09045;Name=norW;gbkey=Gene;gene=norW;gene_biotype=protein_coding;locus_tag=AD39_RS09045;old_locus_tag=AD39_3161 NZ_JJLH01000045.1 Protein Homology CDS 41037 42170 . + 0 ID=cds-WP_032283479.1;Parent=gene-AD39_RS09045;Dbxref=GenBank:WP_032283479.1;Name=WP_032283479.1;Ontology_term=GO:0016731;gbkey=CDS;gene=norW;go_function=oxidoreductase activity%2C acting on iron-sulfur proteins as donors%2C NAD or NADP as acceptor|0016731||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311594.1;locus_tag=AD39_RS09045;product=NADH:flavorubredoxin reductase NorW;protein_id=WP_032283479.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 42299 44551 . - . ID=gene-AD39_RS09040;Name=hypF;gbkey=Gene;gene=hypF;gene_biotype=protein_coding;locus_tag=AD39_RS09040;old_locus_tag=AD39_3162 NZ_JJLH01000045.1 Protein Homology CDS 42299 44551 . - 0 ID=cds-WP_032287605.1;Parent=gene-AD39_RS09040;Dbxref=GenBank:WP_032287605.1;Name=WP_032287605.1;Ontology_term=GO:0036211,GO:0003998,GO:0016743,GO:0046872;gbkey=CDS;gene=hypF;go_function=acylphosphatase activity|0003998||IEA,carboxyl- or carbamoyltransferase activity|0016743||IEA,metal ion binding|0046872||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417192.1;locus_tag=AD39_RS09040;product=carbamoyltransferase HypF;protein_id=WP_032287605.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 44704 45231 . - . ID=gene-AD39_RS09035;Name=hydN;gbkey=Gene;gene=hydN;gene_biotype=protein_coding;locus_tag=AD39_RS09035;old_locus_tag=AD39_3164 NZ_JJLH01000045.1 Protein Homology CDS 44704 45231 . - 0 ID=cds-WP_001078777.1;Parent=gene-AD39_RS09035;Dbxref=GenBank:WP_001078777.1;Name=WP_001078777.1;gbkey=CDS;gene=hydN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311596.1;locus_tag=AD39_RS09035;product=electron transport protein HydN;protein_id=WP_001078777.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 45380 46390 . - . ID=gene-AD39_RS09030;Name=ascG;gbkey=Gene;gene=ascG;gene_biotype=protein_coding;locus_tag=AD39_RS09030;old_locus_tag=AD39_3166 NZ_JJLH01000045.1 Protein Homology CDS 45380 46390 . - 0 ID=cds-WP_001374632.1;Parent=gene-AD39_RS09030;Dbxref=GenBank:WP_001374632.1;Name=WP_001374632.1;gbkey=CDS;gene=ascG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417194.2;locus_tag=AD39_RS09030;product=DNA-binding transcriptional regulator AscG;protein_id=WP_001374632.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 46650 48107 . + . ID=gene-AD39_RS09025;Name=ascF;gbkey=Gene;gene=ascF;gene_biotype=protein_coding;locus_tag=AD39_RS09025;old_locus_tag=AD39_3167 NZ_JJLH01000045.1 Protein Homology CDS 46650 48107 . + 0 ID=cds-WP_001465526.1;Parent=gene-AD39_RS09025;Dbxref=GenBank:WP_001465526.1;Name=WP_001465526.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;gene=ascF;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311598.1;locus_tag=AD39_RS09025;product=PTS cellobiose/arbutin/salicin transporter subunit IIBC;protein_id=WP_001465526.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 48116 49540 . + . ID=gene-AD39_RS09020;Name=ascB;gbkey=Gene;gene=ascB;gene_biotype=protein_coding;locus_tag=AD39_RS09020;old_locus_tag=AD39_3168 NZ_JJLH01000045.1 Protein Homology CDS 48116 49540 . + 0 ID=cds-WP_000110316.1;Parent=gene-AD39_RS09020;Dbxref=GenBank:WP_000110316.1;Name=WP_000110316.1;gbkey=CDS;gene=ascB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417196.1;locus_tag=AD39_RS09020;product=6-phospho-beta-glucosidase AscB;protein_id=WP_000110316.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 49699 50169 . - . ID=gene-AD39_RS09015;Name=hycI;gbkey=Gene;gene=hycI;gene_biotype=protein_coding;locus_tag=AD39_RS09015;old_locus_tag=AD39_3169 NZ_JJLH01000045.1 Protein Homology CDS 49699 50169 . - 0 ID=cds-WP_000132962.1;Parent=gene-AD39_RS09015;Dbxref=GenBank:WP_000132962.1;Name=WP_000132962.1;Ontology_term=GO:0036211,GO:0004190;gbkey=CDS;gene=hycI;go_function=aspartic-type endopeptidase activity|0004190||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311600.1;locus_tag=AD39_RS09015;product=hydrogenase maturation peptidase HycI;protein_id=WP_000132962.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 50162 50572 . - . ID=gene-AD39_RS09010;Name=hycH;gbkey=Gene;gene=hycH;gene_biotype=protein_coding;locus_tag=AD39_RS09010;old_locus_tag=AD39_3170 NZ_JJLH01000045.1 Protein Homology CDS 50162 50572 . - 0 ID=cds-WP_032251166.1;Parent=gene-AD39_RS09010;Dbxref=GenBank:WP_032251166.1;Name=WP_032251166.1;gbkey=CDS;gene=hycH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311601.1;locus_tag=AD39_RS09010;product=formate hydrogenlyase assembly protein HycH;protein_id=WP_032251166.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 50569 51336 . - . ID=gene-AD39_RS09005;Name=hycG;gbkey=Gene;gene=hycG;gene_biotype=protein_coding;locus_tag=AD39_RS09005;old_locus_tag=AD39_3171 NZ_JJLH01000045.1 Protein Homology CDS 50569 51336 . - 0 ID=cds-WP_000067399.1;Parent=gene-AD39_RS09005;Dbxref=GenBank:WP_000067399.1;Name=WP_000067399.1;gbkey=CDS;gene=hycG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311602.1;locus_tag=AD39_RS09005;product=formate hydrogenlyase subunit HycG;protein_id=WP_000067399.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 51336 51878 . - . ID=gene-AD39_RS09000;Name=hycF;gbkey=Gene;gene=hycF;gene_biotype=protein_coding;locus_tag=AD39_RS09000;old_locus_tag=AD39_3172 NZ_JJLH01000045.1 Protein Homology CDS 51336 51878 . - 0 ID=cds-WP_000493792.1;Parent=gene-AD39_RS09000;Dbxref=GenBank:WP_000493792.1;Name=WP_000493792.1;gbkey=CDS;gene=hycF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311603.1;locus_tag=AD39_RS09000;product=formate hydrogenlyase subunit HycF;protein_id=WP_000493792.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 51888 53597 . - . ID=gene-AD39_RS08995;Name=hycE;gbkey=Gene;gene=hycE;gene_biotype=protein_coding;locus_tag=AD39_RS08995;old_locus_tag=AD39_3173 NZ_JJLH01000045.1 Protein Homology CDS 51888 53597 . - 0 ID=cds-WP_001288134.1;Parent=gene-AD39_RS08995;Dbxref=GenBank:WP_001288134.1;Name=WP_001288134.1;gbkey=CDS;gene=hycE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130590.1;locus_tag=AD39_RS08995;product=formate hydrogenlyase subunit HycE;protein_id=WP_001288134.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 53615 54538 . - . ID=gene-AD39_RS08990;Name=hycD;gbkey=Gene;gene=hycD;gene_biotype=protein_coding;locus_tag=AD39_RS08990;old_locus_tag=AD39_3174 NZ_JJLH01000045.1 Protein Homology CDS 53615 54538 . - 0 ID=cds-WP_001533374.1;Parent=gene-AD39_RS08990;Dbxref=GenBank:WP_001533374.1;Name=WP_001533374.1;gbkey=CDS;gene=hycD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417202.1;locus_tag=AD39_RS08990;product=formate hydrogenlyase subunit HycD;protein_id=WP_001533374.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 54541 56367 . - . ID=gene-AD39_RS08985;Name=hycC;gbkey=Gene;gene=hycC;gene_biotype=protein_coding;locus_tag=AD39_RS08985;old_locus_tag=AD39_3175 NZ_JJLH01000045.1 Protein Homology CDS 54541 56367 . - 0 ID=cds-WP_001274375.1;Parent=gene-AD39_RS08985;Dbxref=GenBank:WP_001274375.1;Name=WP_001274375.1;Ontology_term=GO:0042773,GO:0008137;gbkey=CDS;gene=hycC;go_function=NADH dehydrogenase (ubiquinone) activity|0008137||IEA;go_process=ATP synthesis coupled electron transport|0042773||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311606.1;locus_tag=AD39_RS08985;product=formate hydrogenlyase subunit 3;protein_id=WP_001274375.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 56364 56975 . - . ID=gene-AD39_RS08980;Name=hycB;gbkey=Gene;gene=hycB;gene_biotype=protein_coding;locus_tag=AD39_RS08980;old_locus_tag=AD39_3176 NZ_JJLH01000045.1 Protein Homology CDS 56364 56975 . - 0 ID=cds-WP_001079181.1;Parent=gene-AD39_RS08980;Dbxref=GenBank:WP_001079181.1;Name=WP_001079181.1;gbkey=CDS;gene=hycB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311607.1;locus_tag=AD39_RS08980;product=formate hydrogenlyase subunit HycB;protein_id=WP_001079181.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 57100 57561 . - . ID=gene-AD39_RS08975;Name=hycA;gbkey=Gene;gene=hycA;gene_biotype=protein_coding;locus_tag=AD39_RS08975;old_locus_tag=AD39_3177 NZ_JJLH01000045.1 Protein Homology CDS 57100 57561 . - 0 ID=cds-WP_000158056.1;Parent=gene-AD39_RS08975;Dbxref=GenBank:WP_000158056.1;Name=WP_000158056.1;gbkey=CDS;gene=hycA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311608.1;locus_tag=AD39_RS08975;product=formate hydrogenlyase regulator HycA;protein_id=WP_000158056.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 57773 58123 . + . ID=gene-AD39_RS08970;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=AD39_RS08970;old_locus_tag=AD39_3178 NZ_JJLH01000045.1 Protein Homology CDS 57773 58123 . + 0 ID=cds-WP_001299100.1;Parent=gene-AD39_RS08970;Dbxref=GenBank:WP_001299100.1;Name=WP_001299100.1;Ontology_term=GO:0036211,GO:0008901,GO:0016151;gbkey=CDS;gene=hypA;go_function=ferredoxin hydrogenase activity|0008901||IEA,nickel cation binding|0016151||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311609.1;locus_tag=AD39_RS08970;product=hydrogenase maturation nickel metallochaperone HypA;protein_id=WP_001299100.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 58127 58999 . + . ID=gene-AD39_RS08965;Name=hypB;gbkey=Gene;gene=hypB;gene_biotype=protein_coding;locus_tag=AD39_RS08965;old_locus_tag=AD39_3179 NZ_JJLH01000045.1 Protein Homology CDS 58127 58999 . + 0 ID=cds-WP_000337668.1;Parent=gene-AD39_RS08965;Dbxref=GenBank:WP_000337668.1;Name=WP_000337668.1;Ontology_term=GO:0051604,GO:0003924,GO:0016151;gbkey=CDS;gene=hypB;go_function=GTPase activity|0003924||IEA,nickel cation binding|0016151||IEA;go_process=protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417207.1;locus_tag=AD39_RS08965;product=hydrogenase nickel incorporation protein HypB;protein_id=WP_000337668.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 58990 59262 . + . ID=gene-AD39_RS08960;Name=hypC;gbkey=Gene;gene=hypC;gene_biotype=protein_coding;locus_tag=AD39_RS08960;old_locus_tag=AD39_3180 NZ_JJLH01000045.1 Protein Homology CDS 58990 59262 . + 0 ID=cds-WP_000334881.1;Parent=gene-AD39_RS08960;Dbxref=GenBank:WP_000334881.1;Name=WP_000334881.1;gbkey=CDS;gene=hypC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311611.1;locus_tag=AD39_RS08960;product=hydrogenase 3 maturation protein HypC;protein_id=WP_000334881.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 59262 60383 . + . ID=gene-AD39_RS08955;Name=hypD;gbkey=Gene;gene=hypD;gene_biotype=protein_coding;locus_tag=AD39_RS08955;old_locus_tag=AD39_3181 NZ_JJLH01000045.1 Protein Homology CDS 59262 60383 . + 0 ID=cds-WP_001212982.1;Parent=gene-AD39_RS08955;Dbxref=GenBank:WP_001212982.1;Name=WP_001212982.1;Ontology_term=GO:0036211,GO:0016530;gbkey=CDS;gene=hypD;go_function=metallochaperone activity|0016530||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708530.1;locus_tag=AD39_RS08955;product=hydrogenase formation protein HypD;protein_id=WP_001212982.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 60380 61390 . + . ID=gene-AD39_RS08950;Name=hypE;gbkey=Gene;gene=hypE;gene_biotype=protein_coding;locus_tag=AD39_RS08950;old_locus_tag=AD39_3182 NZ_JJLH01000045.1 Protein Homology CDS 60380 61390 . + 0 ID=cds-WP_001059968.1;Parent=gene-AD39_RS08950;Dbxref=GenBank:WP_001059968.1;Name=WP_001059968.1;gbkey=CDS;gene=hypE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417210.2;locus_tag=AD39_RS08950;product=hydrogenase maturation carbamoyl dehydratase HypE;protein_id=WP_001059968.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 61464 63542 . + . ID=gene-AD39_RS08945;Name=flhA;gbkey=Gene;gene=flhA;gene_biotype=protein_coding;locus_tag=AD39_RS08945;old_locus_tag=AD39_3183 NZ_JJLH01000045.1 Protein Homology CDS 61464 63542 . + 0 ID=cds-WP_032287606.1;Parent=gene-AD39_RS08945;Dbxref=GenBank:WP_032287606.1;Name=WP_032287606.1;Ontology_term=GO:0006355,GO:0005515,GO:0005524,GO:0008134,GO:0043565;gbkey=CDS;gene=flhA;go_function=protein binding|0005515||IEA,ATP binding|0005524||IEA,transcription factor binding|0008134||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311614.1;locus_tag=AD39_RS08945;product=formate hydrogenlyase transcriptional activator FlhA;protein_id=WP_032287606.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 63579 63932 . - . ID=gene-AD39_RS08940;Name=ygbA;gbkey=Gene;gene=ygbA;gene_biotype=protein_coding;locus_tag=AD39_RS08940;old_locus_tag=AD39_3184 NZ_JJLH01000045.1 Protein Homology CDS 63579 63932 . - 0 ID=cds-WP_000015498.1;Parent=gene-AD39_RS08940;Dbxref=GenBank:WP_000015498.1;Name=WP_000015498.1;gbkey=CDS;gene=ygbA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708533.1;locus_tag=AD39_RS08940;product=nitrous oxide-stimulated promoter family protein;protein_id=WP_000015498.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 63964 64143 . - . ID=gene-AD39_RS08935;Name=AD39_RS08935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08935;old_locus_tag=AD39_3185 NZ_JJLH01000045.1 Protein Homology CDS 63964 64143 . - 0 ID=cds-WP_000611928.1;Parent=gene-AD39_RS08935;Dbxref=GenBank:WP_000611928.1;Name=WP_000611928.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001363568.1;locus_tag=AD39_RS08935;product=hypothetical protein;protein_id=WP_000611928.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 64219 66780 . + . ID=gene-AD39_RS08930;Name=mutS;gbkey=Gene;gene=mutS;gene_biotype=protein_coding;locus_tag=AD39_RS08930;old_locus_tag=AD39_3186 NZ_JJLH01000045.1 Protein Homology CDS 64219 66780 . + 0 ID=cds-WP_001272898.1;Parent=gene-AD39_RS08930;Dbxref=GenBank:WP_001272898.1;Name=WP_001272898.1;Ontology_term=GO:0006298,GO:0005524,GO:0030983;gbkey=CDS;gene=mutS;go_function=ATP binding|0005524||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311616.1;locus_tag=AD39_RS08930;product=DNA mismatch repair protein MutS;protein_id=WP_001272898.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 66886 67542 . + . ID=gene-AD39_RS08925;Name=pphB;gbkey=Gene;gene=pphB;gene_biotype=protein_coding;locus_tag=AD39_RS08925;old_locus_tag=AD39_3187 NZ_JJLH01000045.1 Protein Homology CDS 66886 67542 . + 0 ID=cds-WP_001141325.1;Parent=gene-AD39_RS08925;Dbxref=GenBank:WP_001141325.1;Name=WP_001141325.1;gbkey=CDS;gene=pphB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311617.1;locus_tag=AD39_RS08925;product=protein-serine/threonine phosphatase;protein_id=WP_001141325.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 67593 68360 . - . ID=gene-AD39_RS08920;Name=ygbI;gbkey=Gene;gene=ygbI;gene_biotype=protein_coding;locus_tag=AD39_RS08920;old_locus_tag=AD39_3188 NZ_JJLH01000045.1 Protein Homology CDS 67593 68360 . - 0 ID=cds-WP_001297141.1;Parent=gene-AD39_RS08920;Dbxref=GenBank:WP_001297141.1;Name=WP_001297141.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ygbI;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417215.2;locus_tag=AD39_RS08920;product=DNA-binding transcriptional repressor YgbI;protein_id=WP_001297141.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 68556 69464 . + . ID=gene-AD39_RS08915;Name=ltnD;gbkey=Gene;gene=ltnD;gene_biotype=protein_coding;locus_tag=AD39_RS08915;old_locus_tag=AD39_3189 NZ_JJLH01000045.1 Protein Homology CDS 68556 69464 . + 0 ID=cds-WP_000847985.1;Parent=gene-AD39_RS08915;Dbxref=GenBank:WP_000847985.1;Name=WP_000847985.1;Ontology_term=GO:0005975,GO:0016616;gbkey=CDS;gene=ltnD;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417216.1;locus_tag=AD39_RS08915;product=L-threonate dehydrogenase;protein_id=WP_000847985.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 69461 70723 . + . ID=gene-AD39_RS08910;Name=otnK;gbkey=Gene;gene=otnK;gene_biotype=protein_coding;locus_tag=AD39_RS08910;old_locus_tag=AD39_3190 NZ_JJLH01000045.1 Protein Homology CDS 69461 70723 . + 0 ID=cds-WP_000590392.1;Parent=gene-AD39_RS08910;Dbxref=GenBank:WP_000590392.1;Name=WP_000590392.1;Ontology_term=GO:0005975,GO:0005524,GO:0016301;gbkey=CDS;gene=otnK;go_function=ATP binding|0005524||IEA,kinase activity|0016301||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001649192.1;locus_tag=AD39_RS08910;product=3-oxo-tetronate kinase;protein_id=WP_000590392.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 70720 71358 . + . ID=gene-AD39_RS08905;Name=ygbL;gbkey=Gene;gene=ygbL;gene_biotype=protein_coding;locus_tag=AD39_RS08905;old_locus_tag=AD39_3191 NZ_JJLH01000045.1 Protein Homology CDS 70720 71358 . + 0 ID=cds-WP_001278994.1;Parent=gene-AD39_RS08905;Dbxref=GenBank:WP_001278994.1;Name=WP_001278994.1;gbkey=CDS;gene=ygbL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417218.1;locus_tag=AD39_RS08905;product=aldolase;protein_id=WP_001278994.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 71363 72139 . + . ID=gene-AD39_RS08900;Name=ygbM;gbkey=Gene;gene=ygbM;gene_biotype=protein_coding;locus_tag=AD39_RS08900;old_locus_tag=AD39_3192 NZ_JJLH01000045.1 Protein Homology CDS 71363 72139 . + 0 ID=cds-WP_001136918.1;Parent=gene-AD39_RS08900;Dbxref=GenBank:WP_001136918.1;Name=WP_001136918.1;gbkey=CDS;gene=ygbM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417219.1;locus_tag=AD39_RS08900;product=HPr family phosphocarrier protein;protein_id=WP_001136918.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 72228 73592 . + . ID=gene-AD39_RS08895;Name=ygbN;gbkey=Gene;gene=ygbN;gene_biotype=protein_coding;locus_tag=AD39_RS08895;old_locus_tag=AD39_3193 NZ_JJLH01000045.1 Protein Homology CDS 72228 73592 . + 0 ID=cds-WP_001521222.1;Parent=gene-AD39_RS08895;Dbxref=GenBank:WP_001521222.1;Name=WP_001521222.1;Ontology_term=GO:0035429,GO:0015128,GO:0016020;gbkey=CDS;gene=ygbN;go_component=membrane|0016020||IEA;go_function=gluconate transmembrane transporter activity|0015128||IEA;go_process=gluconate transmembrane transport|0035429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417220.1;locus_tag=AD39_RS08895;product=GntP family transporter;protein_id=WP_001521222.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 73686 74678 . - . ID=gene-AD39_RS08890;Name=rpoS;gbkey=Gene;gene=rpoS;gene_biotype=protein_coding;locus_tag=AD39_RS08890;old_locus_tag=AD39_3194 NZ_JJLH01000045.1 Protein Homology CDS 73686 74678 . - 0 ID=cds-WP_001363541.1;Parent=gene-AD39_RS08890;Dbxref=GenBank:WP_001363541.1;Name=WP_001363541.1;Ontology_term=GO:0006352,GO:0006355,GO:0003677,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000081498.1;locus_tag=AD39_RS08890;product=RNA polymerase sigma factor RpoS;protein_id=WP_001363541.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 74741 75835 . - . ID=gene-AD39_RS08885;Name=nlpD;gbkey=Gene;gene=nlpD;gene_biotype=protein_coding;locus_tag=AD39_RS08885;old_locus_tag=AD39_3195 NZ_JJLH01000045.1 Protein Homology CDS 74741 75835 . - 0 ID=cds-WP_306174120.1;Parent=gene-AD39_RS08885;Dbxref=GenBank:WP_306174120.1;Name=WP_306174120.1;gbkey=CDS;gene=nlpD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417222.1;locus_tag=AD39_RS08885;product=murein hydrolase activator NlpD;protein_id=WP_306174120.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 76020 76646 . - . ID=gene-AD39_RS08880;Name=pcm;gbkey=Gene;gene=pcm;gene_biotype=protein_coding;locus_tag=AD39_RS08880;old_locus_tag=AD39_3197 NZ_JJLH01000045.1 Protein Homology CDS 76020 76646 . - 0 ID=cds-WP_000254708.1;Parent=gene-AD39_RS08880;Dbxref=GenBank:WP_000254708.1;Name=WP_000254708.1;Ontology_term=GO:0036211,GO:0004719;gbkey=CDS;gene=pcm;go_function=protein-L-isoaspartate (D-aspartate) O-methyltransferase activity|0004719||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130872.1;locus_tag=AD39_RS08880;product=protein-L-isoaspartate O-methyltransferase;protein_id=WP_000254708.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 76640 77401 . - . ID=gene-AD39_RS08875;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=AD39_RS08875;old_locus_tag=AD39_3198 NZ_JJLH01000045.1 Protein Homology CDS 76640 77401 . - 0 ID=cds-WP_001295182.1;Parent=gene-AD39_RS08875;Dbxref=GenBank:WP_001295182.1;Name=WP_001295182.1;Ontology_term=GO:0008252;gbkey=CDS;gene=surE;go_function=nucleotidase activity|0008252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311625.1;locus_tag=AD39_RS08875;product=5'/3'-nucleotidase SurE;protein_id=WP_001295182.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 77382 78431 . - . ID=gene-AD39_RS08870;Name=truD;gbkey=Gene;gene=truD;gene_biotype=protein_coding;locus_tag=AD39_RS08870;old_locus_tag=AD39_3199 NZ_JJLH01000045.1 Protein Homology CDS 77382 78431 . - 0 ID=cds-WP_000568926.1;Parent=gene-AD39_RS08870;Dbxref=GenBank:WP_000568926.1;Name=WP_000568926.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=truD;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311626.1;locus_tag=AD39_RS08870;product=tRNA pseudouridine(13) synthase TruD;protein_id=WP_000568926.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 78428 78907 . - . ID=gene-AD39_RS08865;Name=ispF;gbkey=Gene;gene=ispF;gene_biotype=protein_coding;locus_tag=AD39_RS08865;old_locus_tag=AD39_3200 NZ_JJLH01000045.1 Protein Homology CDS 78428 78907 . - 0 ID=cds-WP_001219242.1;Parent=gene-AD39_RS08865;Dbxref=GenBank:WP_001219242.1;Name=WP_001219242.1;Ontology_term=GO:0019288,GO:0008685;gbkey=CDS;gene=ispF;go_function=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase activity|0008685||IEA;go_process=isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311627.1;locus_tag=AD39_RS08865;product=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=WP_001219242.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 78907 79617 . - . ID=gene-AD39_RS08860;Name=ispD;gbkey=Gene;gene=ispD;gene_biotype=protein_coding;locus_tag=AD39_RS08860;old_locus_tag=AD39_3201 NZ_JJLH01000045.1 Protein Homology CDS 78907 79617 . - 0 ID=cds-WP_000246138.1;Parent=gene-AD39_RS08860;Dbxref=GenBank:WP_000246138.1;Name=WP_000246138.1;Ontology_term=GO:0008299,GO:0019288,GO:0050518;gbkey=CDS;gene=ispD;go_function=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity|0050518||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA,isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway|0019288||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417227.1;locus_tag=AD39_RS08860;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=WP_000246138.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 79636 79947 . - . ID=gene-AD39_RS08855;Name=ftsB;gbkey=Gene;gene=ftsB;gene_biotype=protein_coding;locus_tag=AD39_RS08855;old_locus_tag=AD39_3202 NZ_JJLH01000045.1 Protein Homology CDS 79636 79947 . - 0 ID=cds-WP_000517476.1;Parent=gene-AD39_RS08855;Dbxref=GenBank:WP_000517476.1;Name=WP_000517476.1;gbkey=CDS;gene=ftsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311629.1;locus_tag=AD39_RS08855;product=cell division protein FtsB;protein_id=WP_000517476.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 80141 80464 . - . ID=gene-AD39_RS08850;Name=ygbE;gbkey=Gene;gene=ygbE;gene_biotype=protein_coding;locus_tag=AD39_RS08850;old_locus_tag=AD39_3203 NZ_JJLH01000045.1 Protein Homology CDS 80141 80464 . - 0 ID=cds-WP_001246104.1;Parent=gene-AD39_RS08850;Dbxref=GenBank:WP_001246104.1;Name=WP_001246104.1;gbkey=CDS;gene=ygbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417229.1;locus_tag=AD39_RS08850;product=DUF3561 family protein;protein_id=WP_001246104.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 80514 81119 . - . ID=gene-AD39_RS08845;Name=cysC;gbkey=Gene;gene=cysC;gene_biotype=protein_coding;locus_tag=AD39_RS08845;old_locus_tag=AD39_3204 NZ_JJLH01000045.1 Protein Homology CDS 80514 81119 . - 0 ID=cds-WP_001173673.1;Parent=gene-AD39_RS08845;Dbxref=GenBank:WP_001173673.1;Name=WP_001173673.1;Ontology_term=GO:0000103,GO:0004020,GO:0005524;gbkey=CDS;gene=cysC;go_function=adenylylsulfate kinase activity|0004020||IEA,ATP binding|0005524||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311631.1;locus_tag=AD39_RS08845;product=adenylyl-sulfate kinase;protein_id=WP_001173673.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 81119 82546 . - . ID=gene-AD39_RS08840;Name=cysN;gbkey=Gene;gene=cysN;gene_biotype=protein_coding;locus_tag=AD39_RS08840;old_locus_tag=AD39_3205 NZ_JJLH01000045.1 Protein Homology CDS 81119 82546 . - 0 ID=cds-WP_001090361.1;Parent=gene-AD39_RS08840;Dbxref=GenBank:WP_001090361.1;Name=WP_001090361.1;Ontology_term=GO:0006790,GO:0003924,GO:0005525;gbkey=CDS;gene=cysN;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=sulfur compound metabolic process|0006790||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417231.1;locus_tag=AD39_RS08840;product=sulfate adenylyltransferase subunit CysN;protein_id=WP_001090361.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 82548 83456 . - . ID=gene-AD39_RS08835;Name=cysD;gbkey=Gene;gene=cysD;gene_biotype=protein_coding;locus_tag=AD39_RS08835;old_locus_tag=AD39_3206 NZ_JJLH01000045.1 Protein Homology CDS 82548 83456 . - 0 ID=cds-WP_000372108.1;Parent=gene-AD39_RS08835;Dbxref=GenBank:WP_000372108.1;Name=WP_000372108.1;Ontology_term=GO:0000103,GO:0004781;gbkey=CDS;gene=cysD;go_function=sulfate adenylyltransferase (ATP) activity|0004781||IEA;go_process=sulfate assimilation|0000103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130891.1;locus_tag=AD39_RS08835;product=sulfate adenylyltransferase subunit CysD;protein_id=WP_000372108.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 83708 84745 . + . ID=gene-AD39_RS08830;Name=iap;gbkey=Gene;gene=iap;gene_biotype=protein_coding;locus_tag=AD39_RS08830;old_locus_tag=AD39_3207 NZ_JJLH01000045.1 Protein Homology CDS 83708 84745 . + 0 ID=cds-WP_000490426.1;Parent=gene-AD39_RS08830;Dbxref=GenBank:WP_000490426.1;Name=WP_000490426.1;gbkey=CDS;gene=iap;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311634.1;locus_tag=AD39_RS08830;product=alkaline phosphatase isozyme conversion aminopeptidase;protein_id=WP_000490426.1;transl_table=11 NZ_JJLH01000045.1 RefSeq direct_repeat 84827 86563 . + . ID=id-NZ_JJLH01000045.1:84827..86563;gbkey=repeat_region;inference=COORDINATES: alignment:CRISPRCasFinder:4.3.2;rpt_family=CRISPR;rpt_type=direct;rpt_unit_range=84827..84855;rpt_unit_seq=cggtttatccccgctgacgcggggaacac NZ_JJLH01000045.1 RefSeq gene 86660 86953 . - . ID=gene-AD39_RS0125075;Name=cas2e;gbkey=Gene;gene=cas2e;gene_biotype=protein_coding;locus_tag=AD39_RS0125075;old_locus_tag=AD39_3214 NZ_JJLH01000045.1 Protein Homology CDS 86660 86953 . - 0 ID=cds-WP_023156030.1;Parent=gene-AD39_RS0125075;Dbxref=GenBank:WP_023156030.1;Name=WP_023156030.1;Ontology_term=GO:0043571,GO:0004521;gbkey=CDS;gene=cas2e;go_function=RNA endonuclease activity|0004521||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311635.1;locus_tag=AD39_RS0125075;product=type I-E CRISPR-associated endoribonuclease Cas2e;protein_id=WP_023156030.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 86950 87873 . - . ID=gene-AD39_RS08825;Name=cas1e;gbkey=Gene;gene=cas1e;gene_biotype=protein_coding;locus_tag=AD39_RS08825;old_locus_tag=AD39_3215 NZ_JJLH01000045.1 Protein Homology CDS 86950 87873 . - 0 ID=cds-WP_000144861.1;Parent=gene-AD39_RS08825;Dbxref=GenBank:WP_000144861.1;Name=WP_000144861.1;Ontology_term=GO:0043571,GO:0051607,GO:0003676,GO:0004520,GO:0046872;gbkey=CDS;gene=cas1e;go_function=nucleic acid binding|0003676||IEA,DNA endonuclease activity|0004520||IEA,metal ion binding|0046872||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA,defense response to virus|0051607||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311636.1;locus_tag=AD39_RS08825;product=type I-E CRISPR-associated endonuclease Cas1e;protein_id=WP_000144861.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 87870 88520 . - . ID=gene-AD39_RS08820;Name=cas6e;gbkey=Gene;gene=cas6e;gene_biotype=protein_coding;locus_tag=AD39_RS08820;old_locus_tag=AD39_3216 NZ_JJLH01000045.1 Protein Homology CDS 87870 88520 . - 0 ID=cds-WP_000281446.1;Parent=gene-AD39_RS08820;Dbxref=GenBank:WP_000281446.1;Name=WP_000281446.1;Ontology_term=GO:0043571;gbkey=CDS;gene=cas6e;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000281458.1;locus_tag=AD39_RS08820;product=type I-E CRISPR-associated protein Cas6/Cse3/CasE;protein_id=WP_000281446.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 88502 89248 . - . ID=gene-AD39_RS08815;Name=cas5e;gbkey=Gene;gene=cas5e;gene_biotype=protein_coding;locus_tag=AD39_RS08815;old_locus_tag=AD39_3217 NZ_JJLH01000045.1 Protein Homology CDS 88502 89248 . - 0 ID=cds-WP_000085051.1;Parent=gene-AD39_RS08815;Dbxref=GenBank:WP_000085051.1;Name=WP_000085051.1;Ontology_term=GO:0043571,GO:0051607,GO:0003723;gbkey=CDS;gene=cas5e;go_function=RNA binding|0003723||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA,defense response to virus|0051607||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311638.1;locus_tag=AD39_RS08815;product=type I-E CRISPR-associated protein Cas5/CasD;protein_id=WP_000085051.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 89259 90314 . - . ID=gene-AD39_RS08810;Name=cas7e;gbkey=Gene;gene=cas7e;gene_biotype=protein_coding;locus_tag=AD39_RS08810;old_locus_tag=AD39_3218 NZ_JJLH01000045.1 Protein Homology CDS 89259 90314 . - 0 ID=cds-WP_000206443.1;Parent=gene-AD39_RS08810;Dbxref=GenBank:WP_000206443.1;Name=WP_000206443.1;Ontology_term=GO:0043571;gbkey=CDS;gene=cas7e;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311639.1;locus_tag=AD39_RS08810;product=type I-E CRISPR-associated protein Cas7/Cse4/CasC;protein_id=WP_000206443.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 90326 90862 . - . ID=gene-AD39_RS08805;Name=casB;gbkey=Gene;gene=casB;gene_biotype=protein_coding;gene_synonym=cse2;locus_tag=AD39_RS08805;old_locus_tag=AD39_3219 NZ_JJLH01000045.1 Protein Homology CDS 90326 90862 . - 0 ID=cds-WP_000029329.1;Parent=gene-AD39_RS08805;Dbxref=GenBank:WP_000029329.1;Name=WP_000029329.1;Ontology_term=GO:0043571;gbkey=CDS;gene=casB;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311640.1;locus_tag=AD39_RS08805;product=type I-E CRISPR-associated protein Cse2/CasB;protein_id=WP_000029329.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 90859 92421 . - . ID=gene-AD39_RS08800;Name=casA;gbkey=Gene;gene=casA;gene_biotype=protein_coding;gene_synonym=cse1;locus_tag=AD39_RS08800;old_locus_tag=AD39_3220 NZ_JJLH01000045.1 Protein Homology CDS 90859 92421 . - 0 ID=cds-WP_001084084.1;Parent=gene-AD39_RS08800;Dbxref=GenBank:WP_001084084.1;Name=WP_001084084.1;Ontology_term=GO:0043571;gbkey=CDS;gene=casA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311641.1;locus_tag=AD39_RS08800;product=type I-E CRISPR-associated protein Cse1/CasA;protein_id=WP_001084084.1;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 92519 95218 . - . ID=gene-AD39_RS0125080;Name=cas3;gbkey=Gene;gene=cas3;gene_biotype=pseudogene;locus_tag=AD39_RS0125080;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 92519 95218 . - 0 ID=cds-AD39_RS0125080;Parent=gene-AD39_RS0125080;Note=internal stop;Ontology_term=GO:0043571,GO:0004386;gbkey=CDS;gene=cas3;go_function=helicase activity|0004386||IEA;go_process=maintenance of CRISPR repeat elements|0043571||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001233973.1;locus_tag=AD39_RS0125080;product=CRISPR-associated helicase Cas3';pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 95412 95564 . - . ID=gene-AD39_RS08795;Name=AD39_RS08795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08795;old_locus_tag=AD39_3223 NZ_JJLH01000045.1 Protein Homology CDS 95412 95564 . - 0 ID=cds-WP_000956458.1;Parent=gene-AD39_RS08795;Dbxref=GenBank:WP_000956458.1;Name=WP_000956458.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311643.1;locus_tag=AD39_RS08795;product=Hok/Gef family protein;protein_id=WP_000956458.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 95829 96563 . - . ID=gene-AD39_RS08790;Name=cysH;gbkey=Gene;gene=cysH;gene_biotype=protein_coding;locus_tag=AD39_RS08790;old_locus_tag=AD39_3224 NZ_JJLH01000045.1 Protein Homology CDS 95829 96563 . - 0 ID=cds-WP_000039843.1;Parent=gene-AD39_RS08790;Dbxref=GenBank:WP_000039843.1;Name=WP_000039843.1;Ontology_term=GO:0019379,GO:0004604;gbkey=CDS;gene=cysH;go_function=phosphoadenylyl-sulfate reductase (thioredoxin) activity|0004604||IEA;go_process=sulfate assimilation%2C phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)|0019379||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708560.2;locus_tag=AD39_RS08790;product=phosphoadenosine phosphosulfate reductase;protein_id=WP_000039843.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 96637 98349 . - . ID=gene-AD39_RS08785;Name=cysI;gbkey=Gene;gene=cysI;gene_biotype=protein_coding;locus_tag=AD39_RS08785;old_locus_tag=AD39_3225 NZ_JJLH01000045.1 Protein Homology CDS 96637 98349 . - 0 ID=cds-WP_001290706.1;Parent=gene-AD39_RS08785;Dbxref=GenBank:WP_001290706.1;Name=WP_001290706.1;Ontology_term=GO:0000103,GO:0008652,GO:0004783,GO:0050661,GO:0051539,GO:0009337;gbkey=CDS;gene=cysI;go_component=sulfite reductase complex (NADPH)|0009337||IEA;go_function=sulfite reductase (NADPH) activity|0004783||IEA,NADP binding|0050661||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=sulfate assimilation|0000103||IEA,amino acid biosynthetic process|0008652||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001290736.1;locus_tag=AD39_RS08785;product=assimilatory sulfite reductase (NADPH) hemoprotein subunit;protein_id=WP_001290706.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 98349 100148 . - . ID=gene-AD39_RS08780;Name=cysJ;gbkey=Gene;gene=cysJ;gene_biotype=protein_coding;locus_tag=AD39_RS08780;old_locus_tag=AD39_3226 NZ_JJLH01000045.1 Protein Homology CDS 98349 100148 . - 0 ID=cds-WP_032287607.1;Parent=gene-AD39_RS08780;Dbxref=GenBank:WP_032287607.1;Name=WP_032287607.1;Ontology_term=GO:0000103,GO:0019344,GO:0004783,GO:0010181,GO:0050660;gbkey=CDS;gene=cysJ;go_function=sulfite reductase (NADPH) activity|0004783||IEA,FMN binding|0010181||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=sulfate assimilation|0000103||IEA,cysteine biosynthetic process|0019344||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417244.1;locus_tag=AD39_RS08780;product=NADPH-dependent assimilatory sulfite reductase flavoprotein subunit;protein_id=WP_032287607.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 100467 100829 . + . ID=gene-AD39_RS08775;Name=queD;gbkey=Gene;gene=queD;gene_biotype=protein_coding;locus_tag=AD39_RS08775;old_locus_tag=AD39_3228 NZ_JJLH01000045.1 Protein Homology CDS 100467 100829 . + 0 ID=cds-WP_000108294.1;Parent=gene-AD39_RS08775;Dbxref=GenBank:WP_000108294.1;Name=WP_000108294.1;Ontology_term=GO:0008616,GO:0003824;gbkey=CDS;gene=queD;go_function=catalytic activity|0003824||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708563.2;locus_tag=AD39_RS08775;product=6-carboxytetrahydropterin synthase QueD;protein_id=WP_000108294.1;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 100907 102178 . + . ID=gene-AD39_RS0125085;Name=ygcN;gbkey=Gene;gene=ygcN;gene_biotype=pseudogene;locus_tag=AD39_RS0125085;old_locus_tag=AD39_3230;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 100907 102178 . + 0 ID=cds-AD39_RS0125085;Parent=gene-AD39_RS0125085;Note=internal stop;Ontology_term=GO:0016491;gbkey=CDS;gene=ygcN;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417246.4;locus_tag=AD39_RS0125085;product=FAD-dependent oxidoreductase;pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 102169 102429 . + . ID=gene-AD39_RS08770;Name=ygcO;gbkey=Gene;gene=ygcO;gene_biotype=protein_coding;locus_tag=AD39_RS08770;old_locus_tag=AD39_3231 NZ_JJLH01000045.1 Protein Homology CDS 102169 102429 . + 0 ID=cds-WP_000109367.1;Parent=gene-AD39_RS08770;Dbxref=GenBank:WP_000109367.1;Name=WP_000109367.1;gbkey=CDS;gene=ygcO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311649.2;locus_tag=AD39_RS08770;product=ferredoxin family protein;protein_id=WP_000109367.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 102446 103021 . + . ID=gene-AD39_RS08765;Name=ygcP;gbkey=Gene;gene=ygcP;gene_biotype=protein_coding;locus_tag=AD39_RS08765;old_locus_tag=AD39_3232 NZ_JJLH01000045.1 Protein Homology CDS 102446 103021 . + 0 ID=cds-WP_001130266.1;Parent=gene-AD39_RS08765;Dbxref=GenBank:WP_001130266.1;Name=WP_001130266.1;gbkey=CDS;gene=ygcP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417248.1;locus_tag=AD39_RS08765;product=glycerol-3-phosphate responsive antiterminator;protein_id=WP_001130266.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 103169 104029 . - . ID=gene-AD39_RS08760;Name=ygcQ;gbkey=Gene;gene=ygcQ;gene_biotype=protein_coding;locus_tag=AD39_RS08760;old_locus_tag=AD39_3233 NZ_JJLH01000045.1 Protein Homology CDS 103169 104029 . - 0 ID=cds-WP_001442280.1;Parent=gene-AD39_RS08760;Dbxref=GenBank:WP_001442280.1;Name=WP_001442280.1;Ontology_term=GO:0009055,GO:0050660;gbkey=CDS;gene=ygcQ;go_function=electron transfer activity|0009055||IEA,flavin adenine dinucleotide binding|0050660||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417249.4;locus_tag=AD39_RS08760;product=electron transfer flavoprotein subunit alpha/FixB family protein;protein_id=WP_001442280.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 104026 104805 . - . ID=gene-AD39_RS08755;Name=ygcR;gbkey=Gene;gene=ygcR;gene_biotype=protein_coding;locus_tag=AD39_RS08755;old_locus_tag=AD39_3234 NZ_JJLH01000045.1 Protein Homology CDS 104026 104805 . - 0 ID=cds-WP_001669845.1;Parent=gene-AD39_RS08755;Dbxref=GenBank:WP_001669845.1;Name=WP_001669845.1;gbkey=CDS;gene=ygcR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417250.4;locus_tag=AD39_RS08755;product=electron transfer flavoprotein subunit beta/FixA family protein;protein_id=WP_001669845.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 104783 106192 . - . ID=gene-AD39_RS08750;Name=ygcS;gbkey=Gene;gene=ygcS;gene_biotype=protein_coding;locus_tag=AD39_RS08750;old_locus_tag=AD39_3235 NZ_JJLH01000045.1 Protein Homology CDS 104783 106192 . - 0 ID=cds-WP_000147666.1;Parent=gene-AD39_RS08750;Dbxref=GenBank:WP_000147666.1;Name=WP_000147666.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=ygcS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708568.1;locus_tag=AD39_RS08750;product=MFS transporter;protein_id=WP_000147666.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 106214 107668 . - . ID=gene-AD39_RS08745;Name=ygcU;gbkey=Gene;gene=ygcU;gene_biotype=protein_coding;locus_tag=AD39_RS08745;old_locus_tag=AD39_3236 NZ_JJLH01000045.1 Protein Homology CDS 106214 107668 . - 0 ID=cds-WP_000059312.1;Parent=gene-AD39_RS08745;Dbxref=GenBank:WP_000059312.1;Name=WP_000059312.1;Ontology_term=GO:0016491,GO:0071949;gbkey=CDS;gene=ygcU;go_function=oxidoreductase activity|0016491||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311656.1;locus_tag=AD39_RS08745;product=FAD-binding oxidoreductase;protein_id=WP_000059312.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 107738 108523 . - . ID=gene-AD39_RS08740;Name=ygcW;gbkey=Gene;gene=ygcW;gene_biotype=protein_coding;locus_tag=AD39_RS08740;old_locus_tag=AD39_3237 NZ_JJLH01000045.1 Protein Homology CDS 107738 108523 . - 0 ID=cds-WP_000021321.1;Parent=gene-AD39_RS08740;Dbxref=GenBank:WP_000021321.1;Name=WP_000021321.1;gbkey=CDS;gene=ygcW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417254.4;locus_tag=AD39_RS08740;product=SDR family oxidoreductase;protein_id=WP_000021321.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 108842 110119 . + . ID=gene-AD39_RS08735;Name=yqcE;gbkey=Gene;gene=yqcE;gene_biotype=protein_coding;locus_tag=AD39_RS08735;old_locus_tag=AD39_3238 NZ_JJLH01000045.1 Protein Homology CDS 108842 110119 . + 0 ID=cds-WP_001164567.1;Parent=gene-AD39_RS08735;Dbxref=GenBank:WP_001164567.1;Name=WP_001164567.1;Ontology_term=GO:0055085,GO:0015112,GO:0022857;gbkey=CDS;gene=yqcE;go_function=nitrate transmembrane transporter activity|0015112||IEA,transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311658.1;locus_tag=AD39_RS08735;product=MFS transporter;protein_id=WP_001164567.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 110146 111624 . + . ID=gene-AD39_RS08730;Name=ygcE;gbkey=Gene;gene=ygcE;gene_biotype=protein_coding;locus_tag=AD39_RS08730;old_locus_tag=AD39_3239 NZ_JJLH01000045.1 Protein Homology CDS 110146 111624 . + 0 ID=cds-WP_000039693.1;Parent=gene-AD39_RS08730;Dbxref=GenBank:WP_000039693.1;Name=WP_000039693.1;Ontology_term=GO:0005975,GO:0016310,GO:0005524,GO:0019200;gbkey=CDS;gene=ygcE;go_function=ATP binding|0005524||IEA,carbohydrate kinase activity|0019200||IEA;go_process=carbohydrate metabolic process|0005975||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417256.1;locus_tag=AD39_RS08730;product=FGGY-family carbohydrate kinase;protein_id=WP_000039693.1;transl_table=11 NZ_JJLH01000045.1 RefSeq direct_repeat 112263 113511 . + . ID=id-NZ_JJLH01000045.1:112263..113511;gbkey=repeat_region;inference=COORDINATES: alignment:CRISPRCasFinder:4.3.2;rpt_family=CRISPR;rpt_type=direct;rpt_unit_range=112263..112291;rpt_unit_seq=cggtttatccccgctggcgcggggaacac NZ_JJLH01000045.1 RefSeq gene 113851 114522 . - . ID=gene-AD39_RS08725;Name=queE;gbkey=Gene;gene=queE;gene_biotype=protein_coding;locus_tag=AD39_RS08725;old_locus_tag=AD39_3244 NZ_JJLH01000045.1 Protein Homology CDS 113851 114522 . - 0 ID=cds-WP_001199973.1;Parent=gene-AD39_RS08725;Dbxref=GenBank:WP_001199973.1;Name=WP_001199973.1;Ontology_term=GO:0006400,GO:0051539,GO:1904047;gbkey=CDS;gene=queE;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001199960.1;locus_tag=AD39_RS08725;product=7-carboxy-7-deazaguanine synthase QueE;protein_id=WP_001199973.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 114661 114801 . + . ID=gene-AD39_RS08720;Name=yqcG;gbkey=Gene;gene=yqcG;gene_biotype=protein_coding;locus_tag=AD39_RS08720;old_locus_tag=AD39_3245 NZ_JJLH01000045.1 Protein Homology CDS 114661 114801 . + 0 ID=cds-WP_001288227.1;Parent=gene-AD39_RS08720;Dbxref=GenBank:WP_001288227.1;Name=WP_001288227.1;gbkey=CDS;gene=yqcG;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791252.1;locus_tag=AD39_RS08720;product=cell envelope stress response protein YqcG;protein_id=WP_001288227.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 114815 115687 . + . ID=gene-AD39_RS08715;Name=ygcG;gbkey=Gene;gene=ygcG;gene_biotype=protein_coding;locus_tag=AD39_RS08715;old_locus_tag=AD39_3246 NZ_JJLH01000045.1 Protein Homology CDS 114815 115687 . + 0 ID=cds-WP_001268451.1;Parent=gene-AD39_RS08715;Dbxref=GenBank:WP_001268451.1;Name=WP_001268451.1;Ontology_term=GO:0016791;gbkey=CDS;gene=ygcG;go_function=phosphatase activity|0016791||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417258.4;locus_tag=AD39_RS08715;product=TPM domain-containing protein;protein_id=WP_001268451.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 115747 117045 . - . ID=gene-AD39_RS08710;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=AD39_RS08710;old_locus_tag=AD39_3248 NZ_JJLH01000045.1 Protein Homology CDS 115747 117045 . - 0 ID=cds-WP_000036723.1;Parent=gene-AD39_RS08710;Dbxref=GenBank:WP_000036723.1;Name=WP_000036723.1;Ontology_term=GO:0006096,GO:0000287,GO:0004634,GO:0000015;gbkey=CDS;gene=eno;go_component=phosphopyruvate hydratase complex|0000015||IEA;go_function=magnesium ion binding|0000287||IEA,phosphopyruvate hydratase activity|0004634||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311666.1;locus_tag=AD39_RS08710;product=phosphopyruvate hydratase;protein_id=WP_000036723.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 117133 118770 . - . ID=gene-AD39_RS08705;Name=pyrG;gbkey=Gene;gene=pyrG;gene_biotype=protein_coding;locus_tag=AD39_RS08705;old_locus_tag=AD39_3249 NZ_JJLH01000045.1 Protein Homology CDS 117133 118770 . - 0 ID=cds-WP_000210845.1;Parent=gene-AD39_RS08705;Dbxref=GenBank:WP_000210845.1;Name=WP_000210845.1;Ontology_term=GO:0006221,GO:0003883;gbkey=CDS;gene=pyrG;go_function=CTP synthase activity|0003883||IEA;go_process=pyrimidine nucleotide biosynthetic process|0006221||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130912.1;locus_tag=AD39_RS08705;product=glutamine hydrolyzing CTP synthase;protein_id=WP_000210845.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 118998 119789 . - . ID=gene-AD39_RS08700;Name=mazG;gbkey=Gene;gene=mazG;gene_biotype=protein_coding;locus_tag=AD39_RS08700;old_locus_tag=AD39_3250 NZ_JJLH01000045.1 Protein Homology CDS 118998 119789 . - 0 ID=cds-WP_001071648.1;Parent=gene-AD39_RS08700;Dbxref=GenBank:WP_001071648.1;Name=WP_001071648.1;gbkey=CDS;gene=mazG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311668.1;locus_tag=AD39_RS08700;product=nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_001071648.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 119860 120195 . - . ID=gene-AD39_RS08695;Name=mazF;gbkey=Gene;gene=mazF;gene_biotype=protein_coding;locus_tag=AD39_RS08695;old_locus_tag=AD39_3251 NZ_JJLH01000045.1 Protein Homology CDS 119860 120195 . - 0 ID=cds-WP_000254745.1;Parent=gene-AD39_RS08695;Dbxref=GenBank:WP_000254745.1;Name=WP_000254745.1;gbkey=CDS;gene=mazF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311669.1;locus_tag=AD39_RS08695;product=endoribonuclease MazF;protein_id=WP_000254745.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 120195 120443 . - . ID=gene-AD39_RS08690;Name=mazE;gbkey=Gene;gene=mazE;gene_biotype=protein_coding;locus_tag=AD39_RS08690;old_locus_tag=AD39_3252 NZ_JJLH01000045.1 Protein Homology CDS 120195 120443 . - 0 ID=cds-WP_000581937.1;Parent=gene-AD39_RS08690;Dbxref=GenBank:WP_000581937.1;Name=WP_000581937.1;gbkey=CDS;gene=mazE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311670.1;locus_tag=AD39_RS08690;product=type II toxin-antitoxin system antitoxin MazE;protein_id=WP_000581937.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 120521 122755 . - . ID=gene-AD39_RS08685;Name=relA;gbkey=Gene;gene=relA;gene_biotype=protein_coding;locus_tag=AD39_RS08685;old_locus_tag=AD39_3253 NZ_JJLH01000045.1 Protein Homology CDS 120521 122755 . - 0 ID=cds-WP_000226815.1;Parent=gene-AD39_RS08685;Dbxref=GenBank:WP_000226815.1;Name=WP_000226815.1;Ontology_term=GO:0015969;gbkey=CDS;gene=relA;go_process=guanosine tetraphosphate metabolic process|0015969||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311671.1;locus_tag=AD39_RS08685;product=GTP diphosphokinase;protein_id=WP_000226815.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 122803 124104 . - . ID=gene-AD39_RS08680;Name=rlmD;gbkey=Gene;gene=rlmD;gene_biotype=protein_coding;locus_tag=AD39_RS08680;old_locus_tag=AD39_3254 NZ_JJLH01000045.1 Protein Homology CDS 122803 124104 . - 0 ID=cds-WP_000046785.1;Parent=gene-AD39_RS08680;Dbxref=GenBank:WP_000046785.1;Name=WP_000046785.1;Ontology_term=GO:0006396,GO:0008173;gbkey=CDS;gene=rlmD;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417265.1;locus_tag=AD39_RS08680;product=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;protein_id=WP_000046785.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 124161 126917 . + . ID=gene-AD39_RS08675;Name=barA;gbkey=Gene;gene=barA;gene_biotype=protein_coding;locus_tag=AD39_RS08675;old_locus_tag=AD39_3255 NZ_JJLH01000045.1 Protein Homology CDS 124161 126917 . + 0 ID=cds-WP_000186450.1;Parent=gene-AD39_RS08675;Dbxref=GenBank:WP_000186450.1;Name=WP_000186450.1;Ontology_term=GO:0000160,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=barA;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311673.1;locus_tag=AD39_RS08675;product=two-component sensor histidine kinase BarA;protein_id=WP_000186450.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 127149 128489 . - . ID=gene-AD39_RS08670;Name=gudD;gbkey=Gene;gene=gudD;gene_biotype=protein_coding;locus_tag=AD39_RS08670;old_locus_tag=AD39_3256 NZ_JJLH01000045.1 Protein Homology CDS 127149 128489 . - 0 ID=cds-WP_000098237.1;Parent=gene-AD39_RS08670;Dbxref=GenBank:WP_000098237.1;Name=WP_000098237.1;Ontology_term=GO:0019394,GO:0000287,GO:0008872;gbkey=CDS;gene=gudD;go_function=magnesium ion binding|0000287||IEA,glucarate dehydratase activity|0008872||IEA;go_process=glucarate catabolic process|0019394||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311674.1;locus_tag=AD39_RS08670;product=glucarate dehydratase;protein_id=WP_000098237.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 128510 129850 . - . ID=gene-AD39_RS08665;Name=gudX;gbkey=Gene;gene=gudX;gene_biotype=protein_coding;locus_tag=AD39_RS08665;old_locus_tag=AD39_3257 NZ_JJLH01000045.1 Protein Homology CDS 128510 129850 . - 0 ID=cds-WP_000211758.1;Parent=gene-AD39_RS08665;Dbxref=GenBank:WP_000211758.1;Name=WP_000211758.1;gbkey=CDS;gene=gudX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708582.2;locus_tag=AD39_RS08665;product=enolase C-terminal domain-like protein;protein_id=WP_000211758.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 129852 131204 . - . ID=gene-AD39_RS08660;Name=gudP;gbkey=Gene;gene=gudP;gene_biotype=protein_coding;locus_tag=AD39_RS08660;old_locus_tag=AD39_3258 NZ_JJLH01000045.1 Protein Homology CDS 129852 131204 . - 0 ID=cds-WP_000097082.1;Parent=gene-AD39_RS08660;Dbxref=GenBank:WP_000097082.1;Name=WP_000097082.1;gbkey=CDS;gene=gudP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417269.1;locus_tag=AD39_RS08660;product=galactarate/glucarate/glycerate transporter GudP;protein_id=WP_000097082.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 131639 132088 . - . ID=gene-AD39_RS08655;Name=yqcA;gbkey=Gene;gene=yqcA;gene_biotype=protein_coding;locus_tag=AD39_RS08655;old_locus_tag=AD39_3261 NZ_JJLH01000045.1 Protein Homology CDS 131639 132088 . - 0 ID=cds-WP_000807750.1;Parent=gene-AD39_RS08655;Dbxref=GenBank:WP_000807750.1;Name=WP_000807750.1;Ontology_term=GO:0010181;gbkey=CDS;gene=yqcA;go_function=FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311677.1;locus_tag=AD39_RS08655;product=flavodoxin;protein_id=WP_000807750.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 132106 132888 . - . ID=gene-AD39_RS08650;Name=truC;gbkey=Gene;gene=truC;gene_biotype=protein_coding;locus_tag=AD39_RS08650;old_locus_tag=AD39_3262 NZ_JJLH01000045.1 Protein Homology CDS 132106 132888 . - 0 ID=cds-WP_000890008.1;Parent=gene-AD39_RS08650;Dbxref=GenBank:WP_000890008.1;Name=WP_000890008.1;Ontology_term=GO:0001522,GO:0009982;gbkey=CDS;gene=truC;go_function=pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417271.1;locus_tag=AD39_RS08650;product=tRNA pseudouridine(65) synthase TruC;protein_id=WP_000890008.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 132888 133217 . - . ID=gene-AD39_RS08645;Name=yqcC;gbkey=Gene;gene=yqcC;gene_biotype=protein_coding;locus_tag=AD39_RS08645;old_locus_tag=AD39_3263 NZ_JJLH01000045.1 Protein Homology CDS 132888 133217 . - 0 ID=cds-WP_000206995.1;Parent=gene-AD39_RS08645;Dbxref=GenBank:WP_000206995.1;Name=WP_000206995.1;gbkey=CDS;gene=yqcC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311679.1;locus_tag=AD39_RS08645;product=YqcC family protein;protein_id=WP_000206995.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 133839 134384 . - . ID=gene-AD39_RS08640;Name=syd;gbkey=Gene;gene=syd;gene_biotype=protein_coding;locus_tag=AD39_RS08640;old_locus_tag=AD39_3264 NZ_JJLH01000045.1 Protein Homology CDS 133839 134384 . - 0 ID=cds-WP_000342431.1;Parent=gene-AD39_RS08640;Dbxref=GenBank:WP_000342431.1;Name=WP_000342431.1;Ontology_term=GO:0009898;gbkey=CDS;gene=syd;go_component=cytoplasmic side of plasma membrane|0009898||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417273.1;locus_tag=AD39_RS08640;product=SecY-interacting protein;protein_id=WP_000342431.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 134452 135300 . + . ID=gene-AD39_RS08635;Name=queF;gbkey=Gene;gene=queF;gene_biotype=protein_coding;locus_tag=AD39_RS08635;old_locus_tag=AD39_3265 NZ_JJLH01000045.1 Protein Homology CDS 134452 135300 . + 0 ID=cds-WP_000100409.1;Parent=gene-AD39_RS08635;Dbxref=GenBank:WP_000100409.1;Name=WP_000100409.1;Note=Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis;Ontology_term=GO:0008616,GO:0033739,GO:0043867;gbkey=CDS;gene=queF;go_function=preQ1 synthase activity|0033739||IEA,7-cyano-7-deazaguanine tRNA-ribosyltransferase activity|0043867||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417274.1;locus_tag=AD39_RS08635;product=NADPH-dependent 7-cyano-7-deazaguanine reductase QueF;protein_id=WP_000100409.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 135412 136776 . + . ID=gene-AD39_RS08630;Name=ppnN;gbkey=Gene;gene=ppnN;gene_biotype=protein_coding;locus_tag=AD39_RS08630;old_locus_tag=AD39_3266 NZ_JJLH01000045.1 Protein Homology CDS 135412 136776 . + 0 ID=cds-WP_032287608.1;Parent=gene-AD39_RS08630;Dbxref=GenBank:WP_032287608.1;Name=WP_032287608.1;gbkey=CDS;gene=ppnN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311682.1;locus_tag=AD39_RS08630;product=nucleotide 5'-monophosphate nucleosidase PpnN;protein_id=WP_032287608.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 137333 138622 . + . ID=gene-AD39_RS08625;Name=sdaC;gbkey=Gene;gene=sdaC;gene_biotype=protein_coding;locus_tag=AD39_RS08625;old_locus_tag=AD39_3267 NZ_JJLH01000045.1 Protein Homology CDS 137333 138622 . + 0 ID=cds-WP_000450476.1;Parent=gene-AD39_RS08625;Dbxref=GenBank:WP_000450476.1;Name=WP_000450476.1;gbkey=CDS;gene=sdaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311683.1;locus_tag=AD39_RS08625;product=HAAAP family serine/threonine permease SdaC;protein_id=WP_000450476.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 138680 140047 . + . ID=gene-AD39_RS08620;Name=sdaB;gbkey=Gene;gene=sdaB;gene_biotype=protein_coding;locus_tag=AD39_RS08620;old_locus_tag=AD39_3268 NZ_JJLH01000045.1 Protein Homology CDS 138680 140047 . + 0 ID=cds-WP_000626410.1;Parent=gene-AD39_RS08620;Dbxref=GenBank:WP_000626410.1;Name=WP_000626410.1;gbkey=CDS;gene=sdaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708592.1;locus_tag=AD39_RS08620;product=L-serine ammonia-lyase II;protein_id=WP_000626410.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 140159 140914 . + . ID=gene-AD39_RS08615;Name=xni;gbkey=Gene;gene=xni;gene_biotype=protein_coding;locus_tag=AD39_RS08615;old_locus_tag=AD39_3269 NZ_JJLH01000045.1 Protein Homology CDS 140159 140914 . + 0 ID=cds-WP_000268232.1;Parent=gene-AD39_RS08615;Dbxref=GenBank:WP_000268232.1;Name=WP_000268232.1;Ontology_term=GO:0033567,GO:0003677,GO:0017108;gbkey=CDS;gene=xni;go_function=DNA binding|0003677||IEA,5'-flap endonuclease activity|0017108||IEA;go_process=DNA replication%2C Okazaki fragment processing|0033567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417278.4;locus_tag=AD39_RS08615;product=flap endonuclease Xni;protein_id=WP_000268232.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 140969 142117 . - . ID=gene-AD39_RS08610;Name=fucO;gbkey=Gene;gene=fucO;gene_biotype=protein_coding;locus_tag=AD39_RS08610;old_locus_tag=AD39_3270 NZ_JJLH01000045.1 Protein Homology CDS 140969 142117 . - 0 ID=cds-WP_000013588.1;Parent=gene-AD39_RS08610;Dbxref=GenBank:WP_000013588.1;Name=WP_000013588.1;Ontology_term=GO:0016491;gbkey=CDS;gene=fucO;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417279.2;locus_tag=AD39_RS08610;product=lactaldehyde reductase;protein_id=WP_000013588.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 142145 142792 . - . ID=gene-AD39_RS08605;Name=fucA;gbkey=Gene;gene=fucA;gene_biotype=protein_coding;locus_tag=AD39_RS08605;old_locus_tag=AD39_3271 NZ_JJLH01000045.1 Protein Homology CDS 142145 142792 . - 0 ID=cds-WP_032283489.1;Parent=gene-AD39_RS08605;Dbxref=GenBank:WP_032283489.1;Name=WP_032283489.1;Ontology_term=GO:0006004,GO:0008270,GO:0008738;gbkey=CDS;gene=fucA;go_function=zinc ion binding|0008270||IEA,L-fuculose-phosphate aldolase activity|0008738||IEA;go_process=fucose metabolic process|0006004||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417280.1;locus_tag=AD39_RS08605;product=L-fuculose-phosphate aldolase;protein_id=WP_032283489.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 143339 144655 . + . ID=gene-AD39_RS08600;Name=fucP;gbkey=Gene;gene=fucP;gene_biotype=protein_coding;locus_tag=AD39_RS08600;old_locus_tag=AD39_3272 NZ_JJLH01000045.1 Protein Homology CDS 143339 144655 . + 0 ID=cds-WP_000528603.1;Parent=gene-AD39_RS08600;Dbxref=GenBank:WP_000528603.1;Name=WP_000528603.1;Ontology_term=GO:0015756,GO:0015150;gbkey=CDS;gene=fucP;go_function=fucose transmembrane transporter activity|0015150||IEA;go_process=fucose transmembrane transport|0015756||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417281.1;locus_tag=AD39_RS08600;product=L-fucose:H+ symporter permease;protein_id=WP_000528603.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 144688 146463 . + . ID=gene-AD39_RS08595;Name=fucI;gbkey=Gene;gene=fucI;gene_biotype=protein_coding;locus_tag=AD39_RS08595;old_locus_tag=AD39_3273 NZ_JJLH01000045.1 Protein Homology CDS 144688 146463 . + 0 ID=cds-WP_000724173.1;Parent=gene-AD39_RS08595;Dbxref=GenBank:WP_000724173.1;Name=WP_000724173.1;Ontology_term=GO:0019317,GO:0008736,GO:0030145,GO:0005737;gbkey=CDS;gene=fucI;go_component=cytoplasm|0005737||IEA;go_function=L-fucose isomerase activity|0008736||IEA,manganese ion binding|0030145||IEA;go_process=fucose catabolic process|0019317||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417282.1;locus_tag=AD39_RS08595;product=L-fucose isomerase;protein_id=WP_000724173.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 146572 147990 . + . ID=gene-AD39_RS08590;Name=fucK;gbkey=Gene;gene=fucK;gene_biotype=protein_coding;locus_tag=AD39_RS08590;old_locus_tag=AD39_3274 NZ_JJLH01000045.1 Protein Homology CDS 146572 147990 . + 0 ID=cds-WP_000808376.1;Parent=gene-AD39_RS08590;Dbxref=GenBank:WP_000808376.1;Name=WP_000808376.1;Ontology_term=GO:0042355,GO:0008737;gbkey=CDS;gene=fucK;go_function=L-fuculokinase activity|0008737||IEA;go_process=L-fucose catabolic process|0042355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417283.2;locus_tag=AD39_RS08590;product=L-fuculokinase;protein_id=WP_000808376.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 147992 148414 . + . ID=gene-AD39_RS08585;Name=fucU;gbkey=Gene;gene=fucU;gene_biotype=protein_coding;locus_tag=AD39_RS08585;old_locus_tag=AD39_3275 NZ_JJLH01000045.1 Protein Homology CDS 147992 148414 . + 0 ID=cds-WP_032287609.1;Parent=gene-AD39_RS08585;Dbxref=GenBank:WP_032287609.1;Name=WP_032287609.1;Ontology_term=GO:0042354,GO:0016854,GO:0042806;gbkey=CDS;gene=fucU;go_function=racemase and epimerase activity|0016854||IEA,fucose binding|0042806||IEA;go_process=L-fucose metabolic process|0042354||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311691.1;locus_tag=AD39_RS08585;product=L-fucose mutarotase;protein_id=WP_032287609.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 148472 149203 . + . ID=gene-AD39_RS08580;Name=fucR;gbkey=Gene;gene=fucR;gene_biotype=protein_coding;locus_tag=AD39_RS08580;old_locus_tag=AD39_3276 NZ_JJLH01000045.1 Protein Homology CDS 148472 149203 . + 0 ID=cds-WP_000642344.1;Parent=gene-AD39_RS08580;Dbxref=GenBank:WP_000642344.1;Name=WP_000642344.1;gbkey=CDS;gene=fucR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417285.1;locus_tag=AD39_RS08580;product=L-fucose operon activator;protein_id=WP_000642344.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 149247 150347 . - . ID=gene-AD39_RS08575;Name=rlmM;gbkey=Gene;gene=rlmM;gene_biotype=protein_coding;locus_tag=AD39_RS08575;old_locus_tag=AD39_3277 NZ_JJLH01000045.1 Protein Homology CDS 149247 150347 . - 0 ID=cds-WP_001425987.1;Parent=gene-AD39_RS08575;Dbxref=GenBank:WP_001425987.1;Name=WP_001425987.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rlmM;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010435097.1;locus_tag=AD39_RS08575;product=23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM;protein_id=WP_001425987.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 150340 150735 . - . ID=gene-AD39_RS08570;Name=ygdD;gbkey=Gene;gene=ygdD;gene_biotype=protein_coding;locus_tag=AD39_RS08570;old_locus_tag=AD39_3278 NZ_JJLH01000045.1 Protein Homology CDS 150340 150735 . - 0 ID=cds-WP_000203905.1;Parent=gene-AD39_RS08570;Dbxref=GenBank:WP_000203905.1;Name=WP_000203905.1;gbkey=CDS;gene=ygdD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311694.1;locus_tag=AD39_RS08570;product=DUF423 domain-containing protein;protein_id=WP_000203905.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 150754 151671 . - . ID=gene-AD39_RS08565;Name=gcvA;gbkey=Gene;gene=gcvA;gene_biotype=protein_coding;locus_tag=AD39_RS08565;old_locus_tag=AD39_3279 NZ_JJLH01000045.1 Protein Homology CDS 150754 151671 . - 0 ID=cds-WP_000044401.1;Parent=gene-AD39_RS08565;Dbxref=GenBank:WP_000044401.1;Name=WP_000044401.1;gbkey=CDS;gene=gcvA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005130970.1;locus_tag=AD39_RS08565;product=glycine cleavage system transcriptional regulator GcvA;protein_id=WP_000044401.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 152022 152249 . - . ID=gene-AD39_RS08560;Name=ygdI;gbkey=Gene;gene=ygdI;gene_biotype=protein_coding;locus_tag=AD39_RS08560;old_locus_tag=AD39_3280 NZ_JJLH01000045.1 Protein Homology CDS 152022 152249 . - 0 ID=cds-WP_000750398.1;Parent=gene-AD39_RS08560;Dbxref=GenBank:WP_000750398.1;Name=WP_000750398.1;gbkey=CDS;gene=ygdI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417289.2;locus_tag=AD39_RS08560;product=YgdI/YgdR family lipoprotein;protein_id=WP_000750398.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 152441 153646 . + . ID=gene-AD39_RS08555;Name=csdA;gbkey=Gene;gene=csdA;gene_biotype=protein_coding;locus_tag=AD39_RS08555;old_locus_tag=AD39_3281 NZ_JJLH01000045.1 Protein Homology CDS 152441 153646 . + 0 ID=cds-WP_001433546.1;Parent=gene-AD39_RS08555;Dbxref=GenBank:WP_001433546.1;Name=WP_001433546.1;Ontology_term=GO:0006534,GO:0016226,GO:0030170,GO:0031071;gbkey=CDS;gene=csdA;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine desulfurase activity|0031071||IEA;go_process=cysteine metabolic process|0006534||IEA,iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417290.1;locus_tag=AD39_RS08555;product=cysteine desulfurase CsdA;protein_id=WP_001433546.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 153646 154089 . + . ID=gene-AD39_RS08550;Name=csdE;gbkey=Gene;gene=csdE;gene_biotype=protein_coding;locus_tag=AD39_RS08550;old_locus_tag=AD39_3282 NZ_JJLH01000045.1 Protein Homology CDS 153646 154089 . + 0 ID=cds-WP_000184249.1;Parent=gene-AD39_RS08550;Dbxref=GenBank:WP_000184249.1;Name=WP_000184249.1;gbkey=CDS;gene=csdE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311698.1;locus_tag=AD39_RS08550;product=cysteine desulfurase sulfur acceptor subunit CsdE;protein_id=WP_000184249.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 154140 154946 . - . ID=gene-AD39_RS08545;Name=tcdA;gbkey=Gene;gene=tcdA;gene_biotype=protein_coding;locus_tag=AD39_RS08545;old_locus_tag=AD39_3283 NZ_JJLH01000045.1 Protein Homology CDS 154140 154946 . - 0 ID=cds-WP_000117728.1;Parent=gene-AD39_RS08545;Dbxref=GenBank:WP_000117728.1;Name=WP_000117728.1;Ontology_term=GO:0008641;gbkey=CDS;gene=tcdA;go_function=ubiquitin-like modifier activating enzyme activity|0008641||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417292.1;locus_tag=AD39_RS08545;product=tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA;protein_id=WP_000117728.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 155023 156120 . - . ID=gene-AD39_RS08540;Name=mltA;gbkey=Gene;gene=mltA;gene_biotype=protein_coding;locus_tag=AD39_RS08540;old_locus_tag=AD39_3284 NZ_JJLH01000045.1 Protein Homology CDS 155023 156120 . - 0 ID=cds-WP_000678649.1;Parent=gene-AD39_RS08540;Dbxref=GenBank:WP_000678649.1;Name=WP_000678649.1;Ontology_term=GO:0009254,GO:0004553,GO:0019867;gbkey=CDS;gene=mltA;go_component=outer membrane|0019867||IEA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=peptidoglycan turnover|0009254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008785702.1;locus_tag=AD39_RS08540;product=murein transglycosylase A;protein_id=WP_000678649.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 156329 156405 . + . ID=gene-AD39_RS08535;Name=AD39_RS08535;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS08535;old_locus_tag=AD39_3285 NZ_JJLH01000045.1 tRNAscan-SE tRNA 156329 156405 . + . ID=rna-AD39_RS08535;Parent=gene-AD39_RS08535;anticodon=(pos:156363..156365);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS08535;product=tRNA-Met NZ_JJLH01000045.1 tRNAscan-SE exon 156329 156405 . + . ID=exon-AD39_RS08535-1;Parent=rna-AD39_RS08535;anticodon=(pos:156363..156365);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS08535;product=tRNA-Met NZ_JJLH01000045.1 RefSeq gene 156439 156515 . + . ID=gene-AD39_RS08530;Name=AD39_RS08530;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS08530;old_locus_tag=AD39_3286 NZ_JJLH01000045.1 tRNAscan-SE tRNA 156439 156515 . + . ID=rna-AD39_RS08530;Parent=gene-AD39_RS08530;anticodon=(pos:156473..156475);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS08530;product=tRNA-Met NZ_JJLH01000045.1 tRNAscan-SE exon 156439 156515 . + . ID=exon-AD39_RS08530-1;Parent=rna-AD39_RS08530;anticodon=(pos:156473..156475);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS08530;product=tRNA-Met NZ_JJLH01000045.1 RefSeq gene 156549 156625 . + . ID=gene-AD39_RS08525;Name=AD39_RS08525;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS08525;old_locus_tag=AD39_3287 NZ_JJLH01000045.1 tRNAscan-SE tRNA 156549 156625 . + . ID=rna-AD39_RS08525;Parent=gene-AD39_RS08525;anticodon=(pos:156583..156585);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS08525;product=tRNA-Met NZ_JJLH01000045.1 tRNAscan-SE exon 156549 156625 . + . ID=exon-AD39_RS08525-1;Parent=rna-AD39_RS08525;anticodon=(pos:156583..156585);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS08525;product=tRNA-Met NZ_JJLH01000045.1 RefSeq gene 157258 157758 . + . ID=gene-AD39_RS08520;Name=tssB;gbkey=Gene;gene=tssB;gene_biotype=protein_coding;locus_tag=AD39_RS08520;old_locus_tag=AD39_3288 NZ_JJLH01000045.1 Protein Homology CDS 157258 157758 . + 0 ID=cds-WP_001297760.1;Parent=gene-AD39_RS08520;Dbxref=GenBank:WP_001297760.1;Name=WP_001297760.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssB;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001557371.1;locus_tag=AD39_RS08520;product=type VI secretion system contractile sheath small subunit;protein_id=WP_001297760.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 157817 159355 . + . ID=gene-AD39_RS08515;Name=tssC;gbkey=Gene;gene=tssC;gene_biotype=protein_coding;locus_tag=AD39_RS08515;old_locus_tag=AD39_3289 NZ_JJLH01000045.1 Protein Homology CDS 157817 159355 . + 0 ID=cds-WP_001297758.1;Parent=gene-AD39_RS08515;Dbxref=GenBank:WP_001297758.1;Name=WP_001297758.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;gene=tssC;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001314091.1;locus_tag=AD39_RS08515;product=type VI secretion system contractile sheath large subunit;protein_id=WP_001297758.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 159373 160710 . + . ID=gene-AD39_RS08510;Name=tssK;gbkey=Gene;gene=tssK;gene_biotype=protein_coding;locus_tag=AD39_RS08510;old_locus_tag=AD39_3290 NZ_JJLH01000045.1 Protein Homology CDS 159373 160710 . + 0 ID=cds-WP_023156026.1;Parent=gene-AD39_RS08510;Dbxref=GenBank:WP_023156026.1;Name=WP_023156026.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssK;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020238917.1;locus_tag=AD39_RS08510;product=type VI secretion system baseplate subunit TssK;protein_id=WP_023156026.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 160707 161372 . + . ID=gene-AD39_RS08505;Name=tssL;gbkey=Gene;gene=tssL;gene_biotype=protein_coding;locus_tag=AD39_RS08505;old_locus_tag=AD39_3291 NZ_JJLH01000045.1 Protein Homology CDS 160707 161372 . + 0 ID=cds-WP_032286109.1;Parent=gene-AD39_RS08505;Dbxref=GenBank:WP_032286109.1;Name=WP_032286109.1;gbkey=CDS;gene=tssL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016233510.1;locus_tag=AD39_RS08505;product=type VI secretion system protein TssL%2C short form;protein_id=WP_032286109.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 161385 163037 . + . ID=gene-AD39_RS08500;Name=AD39_RS08500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08500;old_locus_tag=AD39_3292 NZ_JJLH01000045.1 Protein Homology CDS 161385 163037 . + 0 ID=cds-WP_032286110.1;Parent=gene-AD39_RS08500;Dbxref=GenBank:WP_032286110.1;Name=WP_032286110.1;Ontology_term=GO:0015288,GO:0042834,GO:0009279;gbkey=CDS;go_component=cell outer membrane|0009279||IEA;go_function=porin activity|0015288||IEA,peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001246525.1;locus_tag=AD39_RS08500;product=OmpA family protein;protein_id=WP_032286110.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 163095 163586 . + . ID=gene-AD39_RS08495;Name=AD39_RS08495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08495;old_locus_tag=AD39_3293 NZ_JJLH01000045.1 Protein Homology CDS 163095 163586 . + 0 ID=cds-WP_000997067.1;Parent=gene-AD39_RS08495;Dbxref=GenBank:WP_000997067.1;Name=WP_000997067.1;Ontology_term=GO:0033103;gbkey=CDS;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005226602.1;locus_tag=AD39_RS08495;product=Hcp family type VI secretion system effector;protein_id=WP_000997067.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 163777 166422 . + . ID=gene-AD39_RS08490;Name=tssH;gbkey=Gene;gene=tssH;gene_biotype=protein_coding;gene_synonym=clpV;locus_tag=AD39_RS08490;old_locus_tag=AD39_3294 NZ_JJLH01000045.1 Protein Homology CDS 163777 166422 . + 0 ID=cds-WP_023156024.1;Parent=gene-AD39_RS08490;Dbxref=GenBank:WP_023156024.1;Name=WP_023156024.1;Ontology_term=GO:0033103,GO:0016887,GO:0033104;gbkey=CDS;gene=tssH;go_component=type VI protein secretion system complex|0033104||IEA;go_function=ATP hydrolysis activity|0016887||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001535533.1;locus_tag=AD39_RS08490;product=type VI secretion system ATPase TssH;protein_id=WP_023156024.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 166434 168806 . + . ID=gene-AD39_RS08485;Name=AD39_RS08485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08485;old_locus_tag=AD39_3295 NZ_JJLH01000045.1 Protein Homology CDS 166434 168806 . + 0 ID=cds-WP_032283497.1;Parent=gene-AD39_RS08485;Dbxref=GenBank:WP_032283497.1;Name=WP_032283497.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001724923.1;locus_tag=AD39_RS08485;product=type VI secretion system Vgr family protein;protein_id=WP_032283497.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 168809 169630 . + . ID=gene-AD39_RS08480;Name=AD39_RS08480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08480;old_locus_tag=AD39_3296 NZ_JJLH01000045.1 Protein Homology CDS 168809 169630 . + 0 ID=cds-WP_023156021.1;Parent=gene-AD39_RS08480;Dbxref=GenBank:WP_023156021.1;Name=WP_023156021.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000200148.1;locus_tag=AD39_RS08480;product=DUF4123 domain-containing protein;protein_id=WP_023156021.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 169674 170228 . + . ID=gene-AD39_RS08475;Name=AD39_RS08475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08475;old_locus_tag=AD39_3297 NZ_JJLH01000045.1 Protein Homology CDS 169674 170228 . + 0 ID=cds-WP_023156020.1;Parent=gene-AD39_RS08475;Dbxref=GenBank:WP_023156020.1;Name=WP_023156020.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000522548.1;locus_tag=AD39_RS08475;product=DUF3304 domain-containing protein;protein_id=WP_023156020.1;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 170228 170704 . + . ID=gene-AD39_RS29805;Name=AD39_RS29805;end_range=170704,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29805;partial=true;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 170228 170704 . + 0 ID=cds-AD39_RS29805;Parent=gene-AD39_RS29805;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=170704,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000522548.1;locus_tag=AD39_RS29805;partial=true;product=DUF3304 domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 171091 173037 . + . ID=gene-AD39_RS08465;Name=AD39_RS08465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08465;old_locus_tag=AD39_3299 NZ_JJLH01000045.1 Protein Homology CDS 171091 173037 . + 0 ID=cds-WP_032283499.1;Parent=gene-AD39_RS08465;Dbxref=GenBank:WP_032283499.1;Name=WP_032283499.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001402476.1;locus_tag=AD39_RS08465;product=DUF2235 domain-containing protein;protein_id=WP_032283499.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 173758 176274 . + . ID=gene-AD39_RS08455;Name=AD39_RS08455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08455;old_locus_tag=AD39_3302 NZ_JJLH01000045.1 Protein Homology CDS 173758 176274 . + 0 ID=cds-WP_032283501.1;Parent=gene-AD39_RS08455;Dbxref=GenBank:WP_032283501.1;Name=WP_032283501.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001755207.1;locus_tag=AD39_RS08455;product=type VI secretion system Vgr family protein;protein_id=WP_032283501.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 176267 177055 . + . ID=gene-AD39_RS08450;Name=AD39_RS08450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08450;old_locus_tag=AD39_3303 NZ_JJLH01000045.1 Protein Homology CDS 176267 177055 . + 0 ID=cds-WP_001402485.1;Parent=gene-AD39_RS08450;Dbxref=GenBank:WP_001402485.1;Name=WP_001402485.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001402485.1;locus_tag=AD39_RS08450;product=hypothetical protein;protein_id=WP_001402485.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 177140 178066 . + . ID=gene-AD39_RS08445;Name=AD39_RS08445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08445;old_locus_tag=AD39_3304 NZ_JJLH01000045.1 Protein Homology CDS 177140 178066 . + 0 ID=cds-WP_001402486.1;Parent=gene-AD39_RS08445;Dbxref=GenBank:WP_001402486.1;Name=WP_001402486.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001402486.1;locus_tag=AD39_RS08445;product=hypothetical protein;protein_id=WP_001402486.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 178321 179535 . + . ID=gene-AD39_RS0125095;Name=AD39_RS0125095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125095;old_locus_tag=AD39_3305 NZ_JJLH01000045.1 Protein Homology CDS 178321 179535 . + 0 ID=cds-WP_001402487.1;Parent=gene-AD39_RS0125095;Dbxref=GenBank:WP_001402487.1;Name=WP_001402487.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001145249.1;locus_tag=AD39_RS0125095;product=hypothetical protein;protein_id=WP_001402487.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 179592 182924 . + . ID=gene-AD39_RS08440;Name=AD39_RS08440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08440;old_locus_tag=AD39_3306 NZ_JJLH01000045.1 Protein Homology CDS 179592 182924 . + 0 ID=cds-WP_032287624.1;Parent=gene-AD39_RS08440;Dbxref=GenBank:WP_032287624.1;Name=WP_032287624.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001335663.1;locus_tag=AD39_RS08440;product=ImcF-related family protein;protein_id=WP_032287624.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 182917 184527 . + . ID=gene-AD39_RS08435;Name=tssA;gbkey=Gene;gene=tssA;gene_biotype=protein_coding;locus_tag=AD39_RS08435;old_locus_tag=AD39_3307 NZ_JJLH01000045.1 Protein Homology CDS 182917 184527 . + 0 ID=cds-WP_001402489.1;Parent=gene-AD39_RS08435;Dbxref=GenBank:WP_001402489.1;Name=WP_001402489.1;gbkey=CDS;gene=tssA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001299109.1;locus_tag=AD39_RS08435;product=type VI secretion system protein TssA;protein_id=WP_001402489.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 184533 185951 . + . ID=gene-AD39_RS08430;Name=AD39_RS08430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08430;old_locus_tag=AD39_3308 NZ_JJLH01000045.1 Protein Homology CDS 184533 185951 . + 0 ID=cds-WP_032286123.1;Parent=gene-AD39_RS08430;Dbxref=GenBank:WP_032286123.1;Name=WP_032286123.1;Ontology_term=GO:0008270;gbkey=CDS;go_function=zinc ion binding|0008270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001402492.1;locus_tag=AD39_RS08430;product=PAAR domain-containing protein;protein_id=WP_032286123.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 185944 186366 . + . ID=gene-AD39_RS0125100;Name=AD39_RS0125100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125100 NZ_JJLH01000045.1 Protein Homology CDS 185944 186366 . + 0 ID=cds-WP_000199055.1;Parent=gene-AD39_RS0125100;Dbxref=GenBank:WP_000199055.1;Name=WP_000199055.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001774033.1;locus_tag=AD39_RS0125100;product=hypothetical protein;protein_id=WP_000199055.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 186926 188686 . + . ID=gene-AD39_RS08425;Name=tssF;gbkey=Gene;gene=tssF;gene_biotype=protein_coding;locus_tag=AD39_RS08425;old_locus_tag=AD39_3310 NZ_JJLH01000045.1 Protein Homology CDS 186926 188686 . + 0 ID=cds-WP_001402494.1;Parent=gene-AD39_RS08425;Dbxref=GenBank:WP_001402494.1;Name=WP_001402494.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssF;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001536307.1;locus_tag=AD39_RS08425;product=type VI secretion system baseplate subunit TssF;protein_id=WP_001402494.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 188650 189729 . + . ID=gene-AD39_RS08420;Name=tssG;gbkey=Gene;gene=tssG;gene_biotype=protein_coding;locus_tag=AD39_RS08420;old_locus_tag=AD39_3311 NZ_JJLH01000045.1 Protein Homology CDS 188650 189729 . + 0 ID=cds-WP_001402495.1;Parent=gene-AD39_RS08420;Dbxref=GenBank:WP_001402495.1;Name=WP_001402495.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssG;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000373314.1;locus_tag=AD39_RS08420;product=type VI secretion system baseplate subunit TssG;protein_id=WP_001402495.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 189710 190246 . + . ID=gene-AD39_RS08415;Name=tssJ;gbkey=Gene;gene=tssJ;gene_biotype=protein_coding;locus_tag=AD39_RS08415;old_locus_tag=AD39_3312 NZ_JJLH01000045.1 Protein Homology CDS 189710 190246 . + 0 ID=cds-WP_001402496.1;Parent=gene-AD39_RS08415;Dbxref=GenBank:WP_001402496.1;Name=WP_001402496.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssJ;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000484007.1;locus_tag=AD39_RS08415;product=type VI secretion system lipoprotein TssJ;protein_id=WP_001402496.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 190250 190678 . + . ID=gene-AD39_RS08410;Name=tssE;gbkey=Gene;gene=tssE;gene_biotype=protein_coding;locus_tag=AD39_RS08410;old_locus_tag=AD39_3313 NZ_JJLH01000045.1 Protein Homology CDS 190250 190678 . + 0 ID=cds-WP_000106969.1;Parent=gene-AD39_RS08410;Dbxref=GenBank:WP_000106969.1;Name=WP_000106969.1;Ontology_term=GO:0033103;gbkey=CDS;gene=tssE;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000106970.1;locus_tag=AD39_RS08410;product=type VI secretion system baseplate subunit TssE;protein_id=WP_000106969.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 190678 192054 . + . ID=gene-AD39_RS08405;Name=AD39_RS08405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08405;old_locus_tag=AD39_3314 NZ_JJLH01000045.1 Protein Homology CDS 190678 192054 . + 0 ID=cds-WP_001402497.1;Parent=gene-AD39_RS08405;Dbxref=GenBank:WP_001402497.1;Name=WP_001402497.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001683247.1;locus_tag=AD39_RS08405;product=ImpA domain-containing protein;protein_id=WP_001402497.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 192119 192667 . + . ID=gene-AD39_RS08400;Name=AD39_RS08400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08400;old_locus_tag=AD39_3315 NZ_JJLH01000045.1 Protein Homology CDS 192119 192667 . + 0 ID=cds-WP_032283502.1;Parent=gene-AD39_RS08400;Dbxref=GenBank:WP_032283502.1;Name=WP_032283502.1;Ontology_term=GO:0006355,GO:0003677,GO:0008270;gbkey=CDS;go_function=DNA binding|0003677||IEA,zinc ion binding|0008270||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000276892.1;locus_tag=AD39_RS08400;product=MucR family transcriptional regulator;protein_id=WP_032283502.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 192972 193048 . + . ID=gene-AD39_RS08395;Name=AD39_RS08395;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS08395;old_locus_tag=AD39_3316 NZ_JJLH01000045.1 tRNAscan-SE tRNA 192972 193048 . + . ID=rna-AD39_RS08395;Parent=gene-AD39_RS08395;anticodon=(pos:193006..193008);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS08395;product=tRNA-Met NZ_JJLH01000045.1 tRNAscan-SE exon 192972 193048 . + . ID=exon-AD39_RS08395-1;Parent=rna-AD39_RS08395;anticodon=(pos:193006..193008);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS08395;product=tRNA-Met NZ_JJLH01000045.1 RefSeq gene 193123 194376 . - . ID=gene-AD39_RS08390;Name=amiC;gbkey=Gene;gene=amiC;gene_biotype=protein_coding;locus_tag=AD39_RS08390;old_locus_tag=AD39_3317 NZ_JJLH01000045.1 Protein Homology CDS 193123 194376 . - 0 ID=cds-WP_000016907.1;Parent=gene-AD39_RS08390;Dbxref=GenBank:WP_000016907.1;Name=WP_000016907.1;Note=Like AmiA%2C dependent on TAT (Twin-Arginine Translocation) system for export.;gbkey=CDS;gene=amiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311701.2;locus_tag=AD39_RS08390;product=N-acetylmuramoyl-L-alanine amidase AmiC;protein_id=WP_000016907.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 194608 195939 . + . ID=gene-AD39_RS08385;Name=argA;gbkey=Gene;gene=argA;gene_biotype=protein_coding;locus_tag=AD39_RS08385;old_locus_tag=AD39_3318 NZ_JJLH01000045.1 Protein Homology CDS 194608 195939 . + 0 ID=cds-WP_000237948.1;Parent=gene-AD39_RS08385;Dbxref=GenBank:WP_000237948.1;Name=WP_000237948.1;Ontology_term=GO:0006526,GO:0004042;gbkey=CDS;gene=argA;go_function=L-glutamate N-acetyltransferase activity|0004042||IEA;go_process=L-arginine biosynthetic process|0006526||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311702.1;locus_tag=AD39_RS08385;product=amino-acid N-acetyltransferase;protein_id=WP_000237948.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 196001 197827 . - . ID=gene-AD39_RS08380;Name=recD;gbkey=Gene;gene=recD;gene_biotype=protein_coding;locus_tag=AD39_RS08380;old_locus_tag=AD39_3319 NZ_JJLH01000045.1 Protein Homology CDS 196001 197827 . - 0 ID=cds-WP_000775946.1;Parent=gene-AD39_RS08380;Dbxref=GenBank:WP_000775946.1;Name=WP_000775946.1;Ontology_term=GO:0006302,GO:0006310,GO:0004386,GO:0008854,GO:0009338;gbkey=CDS;gene=recD;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=helicase activity|0004386||IEA,exodeoxyribonuclease V activity|0008854||IEA;go_process=double-strand break repair|0006302||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417296.1;locus_tag=AD39_RS08380;product=exodeoxyribonuclease V subunit alpha;protein_id=WP_000775946.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 197827 201369 . - . ID=gene-AD39_RS08375;Name=recB;gbkey=Gene;gene=recB;gene_biotype=protein_coding;locus_tag=AD39_RS08375;old_locus_tag=AD39_3320 NZ_JJLH01000045.1 Protein Homology CDS 197827 201369 . - 0 ID=cds-WP_001285985.1;Parent=gene-AD39_RS08375;Dbxref=GenBank:WP_001285985.1;Name=WP_001285985.1;Ontology_term=GO:0006281,GO:0003677,GO:0003678,GO:0005524,GO:0008854;gbkey=CDS;gene=recB;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,exodeoxyribonuclease V activity|0008854||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708611.2;locus_tag=AD39_RS08375;product=exodeoxyribonuclease V subunit beta;protein_id=WP_001285985.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 201362 204250 . - . ID=gene-AD39_RS08370;Name=ptrA;gbkey=Gene;gene=ptrA;gene_biotype=protein_coding;locus_tag=AD39_RS08370;old_locus_tag=AD39_3321 NZ_JJLH01000045.1 Protein Homology CDS 201362 204250 . - 0 ID=cds-WP_032287610.1;Parent=gene-AD39_RS08370;Dbxref=GenBank:WP_032287610.1;Name=WP_032287610.1;Ontology_term=GO:0006508,GO:0004222,GO:0046872;gbkey=CDS;gene=ptrA;go_function=metalloendopeptidase activity|0004222||IEA,metal ion binding|0046872||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417298.1;locus_tag=AD39_RS08370;product=pitrilysin;protein_id=WP_032287610.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 204426 207794 . - . ID=gene-AD39_RS08365;Name=recC;gbkey=Gene;gene=recC;gene_biotype=protein_coding;locus_tag=AD39_RS08365;old_locus_tag=AD39_3322 NZ_JJLH01000045.1 Protein Homology CDS 204426 207794 . - 0 ID=cds-WP_032283504.1;Parent=gene-AD39_RS08365;Dbxref=GenBank:WP_032283504.1;Name=WP_032283504.1;Ontology_term=GO:0008854,GO:0009338;gbkey=CDS;gene=recC;go_component=exodeoxyribonuclease V complex|0009338||IEA;go_function=exodeoxyribonuclease V activity|0008854||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417299.1;locus_tag=AD39_RS08365;product=exodeoxyribonuclease V subunit gamma;protein_id=WP_032283504.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 207807 208130 . - . ID=gene-AD39_RS08360;Name=ppdC;gbkey=Gene;gene=ppdC;gene_biotype=protein_coding;locus_tag=AD39_RS08360;old_locus_tag=AD39_3323 NZ_JJLH01000045.1 Protein Homology CDS 207807 208130 . - 0 ID=cds-WP_001276477.1;Parent=gene-AD39_RS08360;Dbxref=GenBank:WP_001276477.1;Name=WP_001276477.1;gbkey=CDS;gene=ppdC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417300.1;locus_tag=AD39_RS08360;product=prepilin-type N-terminal cleavage/methylation domain-containing protein;protein_id=WP_001276477.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 208115 208522 . - . ID=gene-AD39_RS08355;Name=ygdB;gbkey=Gene;gene=ygdB;gene_biotype=protein_coding;locus_tag=AD39_RS08355;old_locus_tag=AD39_3324 NZ_JJLH01000045.1 Protein Homology CDS 208115 208522 . - 0 ID=cds-WP_001078393.1;Parent=gene-AD39_RS08355;Dbxref=GenBank:WP_001078393.1;Name=WP_001078393.1;gbkey=CDS;gene=ygdB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417301.4;locus_tag=AD39_RS08355;product=DUF2509 family protein;protein_id=WP_001078393.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 208519 209082 . - . ID=gene-AD39_RS08350;Name=ppdB;gbkey=Gene;gene=ppdB;gene_biotype=protein_coding;locus_tag=AD39_RS08350;old_locus_tag=AD39_3325 NZ_JJLH01000045.1 Protein Homology CDS 208519 209082 . - 0 ID=cds-WP_001144331.1;Parent=gene-AD39_RS08350;Dbxref=GenBank:WP_001144331.1;Name=WP_001144331.1;gbkey=CDS;gene=ppdB;inference=COORDINATES: similar to AA sequence:RefSeq:YP_008439276.1;locus_tag=AD39_RS08350;product=prepilin peptidase-dependent protein;protein_id=WP_001144331.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 209073 209543 . - . ID=gene-AD39_RS08345;Name=ppdA;gbkey=Gene;gene=ppdA;gene_biotype=protein_coding;locus_tag=AD39_RS08345;old_locus_tag=AD39_3326 NZ_JJLH01000045.1 Protein Homology CDS 209073 209543 . - 0 ID=cds-WP_000857051.1;Parent=gene-AD39_RS08345;Dbxref=GenBank:WP_000857051.1;Name=WP_000857051.1;gbkey=CDS;gene=ppdA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417303.1;locus_tag=AD39_RS08345;product=prepilin peptidase-dependent protein;protein_id=WP_000857051.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 209728 210522 . - . ID=gene-AD39_RS08340;Name=thyA;gbkey=Gene;gene=thyA;gene_biotype=protein_coding;locus_tag=AD39_RS08340;old_locus_tag=AD39_3327 NZ_JJLH01000045.1 Protein Homology CDS 209728 210522 . - 0 ID=cds-WP_000816232.1;Parent=gene-AD39_RS08340;Dbxref=GenBank:WP_000816232.1;Name=WP_000816232.1;Ontology_term=GO:0006231,GO:0004799;gbkey=CDS;gene=thyA;go_function=thymidylate synthase activity|0004799||IEA;go_process=dTMP biosynthetic process|0006231||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123418.1;locus_tag=AD39_RS08340;product=thymidylate synthase;protein_id=WP_000816232.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 210529 211404 . - . ID=gene-AD39_RS08335;Name=lgt;gbkey=Gene;gene=lgt;gene_biotype=protein_coding;locus_tag=AD39_RS08335;old_locus_tag=AD39_3328 NZ_JJLH01000045.1 Protein Homology CDS 210529 211404 . - 0 ID=cds-WP_000204658.1;Parent=gene-AD39_RS08335;Dbxref=GenBank:WP_000204658.1;Name=WP_000204658.1;Ontology_term=GO:0009249,GO:0008961,GO:0016020;gbkey=CDS;gene=lgt;go_component=membrane|0016020||IEA;go_function=phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity|0008961||IEA;go_process=protein lipoylation|0009249||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311712.1;locus_tag=AD39_RS08335;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_000204658.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 211555 213801 . - . ID=gene-AD39_RS08330;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=AD39_RS08330;old_locus_tag=AD39_3329 NZ_JJLH01000045.1 Protein Homology CDS 211555 213801 . - 0 ID=cds-WP_001581674.1;Parent=gene-AD39_RS08330;Dbxref=GenBank:WP_001581674.1;Name=WP_001581674.1;gbkey=CDS;gene=ptsP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311713.1;locus_tag=AD39_RS08330;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=WP_001581674.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 213814 214344 . - . ID=gene-AD39_RS08325;Name=rppH;gbkey=Gene;gene=rppH;gene_biotype=protein_coding;locus_tag=AD39_RS08325;old_locus_tag=AD39_3330 NZ_JJLH01000045.1 Protein Homology CDS 213814 214344 . - 0 ID=cds-WP_000564489.1;Parent=gene-AD39_RS08325;Dbxref=GenBank:WP_000564489.1;Name=WP_000564489.1;Ontology_term=GO:0016787;gbkey=CDS;gene=rppH;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001655775.1;locus_tag=AD39_RS08325;product=RNA pyrophosphohydrolase;protein_id=WP_000564489.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 214697 214843 . - . ID=gene-AD39_RS29980;Name=ygdT;gbkey=Gene;gene=ygdT;gene_biotype=protein_coding;locus_tag=AD39_RS29980 NZ_JJLH01000045.1 Protein Homology CDS 214697 214843 . - 0 ID=cds-WP_000953278.1;Parent=gene-AD39_RS29980;Dbxref=GenBank:WP_000953278.1;Name=WP_000953278.1;gbkey=CDS;gene=ygdT;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502650.1;locus_tag=AD39_RS29980;product=protein YgdT;protein_id=WP_000953278.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 215029 215718 . + . ID=gene-AD39_RS08315;Name=mutH;gbkey=Gene;gene=mutH;gene_biotype=protein_coding;locus_tag=AD39_RS08315;old_locus_tag=AD39_3332 NZ_JJLH01000045.1 Protein Homology CDS 215029 215718 . + 0 ID=cds-WP_032283505.1;Parent=gene-AD39_RS08315;Dbxref=GenBank:WP_032283505.1;Name=WP_032283505.1;Ontology_term=GO:0006304,GO:0004519;gbkey=CDS;gene=mutH;go_function=endonuclease activity|0004519||IEA;go_process=DNA modification|0006304||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311715.1;locus_tag=AD39_RS08315;product=DNA mismatch repair endonuclease MutH;protein_id=WP_032283505.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 215787 216500 . + . ID=gene-AD39_RS08310;Name=ygdQ;gbkey=Gene;gene=ygdQ;gene_biotype=protein_coding;locus_tag=AD39_RS08310;old_locus_tag=AD39_3333 NZ_JJLH01000045.1 Protein Homology CDS 215787 216500 . + 0 ID=cds-WP_000895624.1;Parent=gene-AD39_RS08310;Dbxref=GenBank:WP_000895624.1;Name=WP_000895624.1;Ontology_term=GO:0005886,GO:0016020;gbkey=CDS;gene=ygdQ;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311716.1;locus_tag=AD39_RS08310;product=TerC family protein;protein_id=WP_000895624.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 216638 216856 . + . ID=gene-AD39_RS08305;Name=ygdR;gbkey=Gene;gene=ygdR;gene_biotype=protein_coding;locus_tag=AD39_RS08305;old_locus_tag=AD39_3334 NZ_JJLH01000045.1 Protein Homology CDS 216638 216856 . + 0 ID=cds-WP_000758655.1;Parent=gene-AD39_RS08305;Dbxref=GenBank:WP_000758655.1;Name=WP_000758655.1;gbkey=CDS;gene=ygdR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311717.1;locus_tag=AD39_RS08305;product=lipoprotein YgdR;protein_id=WP_000758655.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 216964 218004 . + . ID=gene-AD39_RS08300;Name=tas;gbkey=Gene;gene=tas;gene_biotype=protein_coding;locus_tag=AD39_RS08300;old_locus_tag=AD39_3335 NZ_JJLH01000045.1 Protein Homology CDS 216964 218004 . + 0 ID=cds-WP_001199295.1;Parent=gene-AD39_RS08300;Dbxref=GenBank:WP_001199295.1;Name=WP_001199295.1;Ontology_term=GO:0047834;gbkey=CDS;gene=tas;go_function=D-threo-aldose 1-dehydrogenase activity|0047834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417311.1;locus_tag=AD39_RS08300;product=NADP(H)-dependent aldo-keto reductase;protein_id=WP_001199295.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 218036 219229 . - . ID=gene-AD39_RS08295;Name=lplT;gbkey=Gene;gene=lplT;gene_biotype=protein_coding;locus_tag=AD39_RS08295;old_locus_tag=AD39_3336 NZ_JJLH01000045.1 Protein Homology CDS 218036 219229 . - 0 ID=cds-WP_000004616.1;Parent=gene-AD39_RS08295;Dbxref=GenBank:WP_000004616.1;Name=WP_000004616.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=lplT;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417312.1;locus_tag=AD39_RS08295;product=lysophospholipid transporter LplT;protein_id=WP_000004616.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 219222 221381 . - . ID=gene-AD39_RS08290;Name=aas;gbkey=Gene;gene=aas;gene_biotype=protein_coding;locus_tag=AD39_RS08290;old_locus_tag=AD39_3337 NZ_JJLH01000045.1 Protein Homology CDS 219222 221381 . - 0 ID=cds-WP_032283506.1;Parent=gene-AD39_RS08290;Dbxref=GenBank:WP_032283506.1;Name=WP_032283506.1;Ontology_term=GO:0006631,GO:0008654,GO:0008779,GO:0008922;gbkey=CDS;gene=aas;go_function=acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase activity|0008779||IEA,long-chain fatty acid [acyl-carrier-protein] ligase activity|0008922||IEA;go_process=fatty acid metabolic process|0006631||IEA,phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311720.1;locus_tag=AD39_RS08290;product=bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase;protein_id=WP_032283506.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 221967 222998 . + . ID=gene-AD39_RS08285;Name=galR;gbkey=Gene;gene=galR;gene_biotype=protein_coding;locus_tag=AD39_RS08285;old_locus_tag=AD39_3338 NZ_JJLH01000045.1 Protein Homology CDS 221967 222998 . + 0 ID=cds-WP_000201048.1;Parent=gene-AD39_RS08285;Dbxref=GenBank:WP_000201048.1;Name=WP_000201048.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=galR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417314.1;locus_tag=AD39_RS08285;product=HTH-type transcriptional regulator GalR;protein_id=WP_000201048.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 223005 224267 . - . ID=gene-AD39_RS08280;Name=lysA;gbkey=Gene;gene=lysA;gene_biotype=protein_coding;locus_tag=AD39_RS08280;old_locus_tag=AD39_3339 NZ_JJLH01000045.1 Protein Homology CDS 223005 224267 . - 0 ID=cds-WP_001120711.1;Parent=gene-AD39_RS08280;Dbxref=GenBank:WP_001120711.1;Name=WP_001120711.1;Ontology_term=GO:0009089,GO:0008836;gbkey=CDS;gene=lysA;go_function=diaminopimelate decarboxylase activity|0008836||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417315.1;locus_tag=AD39_RS08280;product=diaminopimelate decarboxylase;protein_id=WP_001120711.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 224389 225324 . + . ID=gene-AD39_RS08275;Name=lysR;gbkey=Gene;gene=lysR;gene_biotype=protein_coding;locus_tag=AD39_RS08275;old_locus_tag=AD39_3340 NZ_JJLH01000045.1 Protein Homology CDS 224389 225324 . + 0 ID=cds-WP_000741827.1;Parent=gene-AD39_RS08275;Dbxref=GenBank:WP_000741827.1;Name=WP_000741827.1;gbkey=CDS;gene=lysR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311723.1;locus_tag=AD39_RS08275;product=DNA-binding transcriptional regulator LysR;protein_id=WP_000741827.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 225311 226003 . - . ID=gene-AD39_RS08270;Name=ygeA;gbkey=Gene;gene=ygeA;gene_biotype=protein_coding;locus_tag=AD39_RS08270;old_locus_tag=AD39_3341 NZ_JJLH01000045.1 Protein Homology CDS 225311 226003 . - 0 ID=cds-WP_000848664.1;Parent=gene-AD39_RS08270;Dbxref=GenBank:WP_000848664.1;Name=WP_000848664.1;gbkey=CDS;gene=ygeA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311724.1;locus_tag=AD39_RS08270;product=amino acid racemase;protein_id=WP_000848664.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 226132 227550 . - . ID=gene-AD39_RS08265;Name=araE;gbkey=Gene;gene=araE;gene_biotype=protein_coding;locus_tag=AD39_RS08265;old_locus_tag=AD39_3342 NZ_JJLH01000045.1 Protein Homology CDS 226132 227550 . - 0 ID=cds-WP_032287611.1;Parent=gene-AD39_RS08265;Dbxref=GenBank:WP_032287611.1;Name=WP_032287611.1;gbkey=CDS;gene=araE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311725.1;locus_tag=AD39_RS08265;product=arabinose-proton symporter AraE;protein_id=WP_032287611.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 227865 228626 . - . ID=gene-AD39_RS08260;Name=kduD;gbkey=Gene;gene=kduD;gene_biotype=protein_coding;locus_tag=AD39_RS08260;old_locus_tag=AD39_3343 NZ_JJLH01000045.1 Protein Homology CDS 227865 228626 . - 0 ID=cds-WP_000603517.1;Parent=gene-AD39_RS08260;Dbxref=GenBank:WP_000603517.1;Name=WP_000603517.1;Ontology_term=GO:0000272,GO:0016491,GO:0051287;gbkey=CDS;gene=kduD;go_function=oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA;go_process=polysaccharide catabolic process|0000272||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417319.1;locus_tag=AD39_RS08260;product=2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;protein_id=WP_000603517.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 228656 229492 . - . ID=gene-AD39_RS08255;Name=kduI;gbkey=Gene;gene=kduI;gene_biotype=protein_coding;locus_tag=AD39_RS08255;old_locus_tag=AD39_3344 NZ_JJLH01000045.1 Protein Homology CDS 228656 229492 . - 0 ID=cds-WP_000383237.1;Parent=gene-AD39_RS08255;Dbxref=GenBank:WP_000383237.1;Name=WP_000383237.1;Ontology_term=GO:0045490,GO:0008697;gbkey=CDS;gene=kduI;go_function=4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity|0008697||IEA;go_process=pectin catabolic process|0045490||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417320.1;locus_tag=AD39_RS08255;product=5-dehydro-4-deoxy-D-glucuronate isomerase;protein_id=WP_000383237.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 229779 230960 . - . ID=gene-AD39_RS08250;Name=yqeF;gbkey=Gene;gene=yqeF;gene_biotype=protein_coding;locus_tag=AD39_RS08250;old_locus_tag=AD39_3345 NZ_JJLH01000045.1 Protein Homology CDS 229779 230960 . - 0 ID=cds-WP_032198551.1;Parent=gene-AD39_RS08250;Dbxref=GenBank:WP_032198551.1;Name=WP_032198551.1;Ontology_term=GO:0003985;gbkey=CDS;gene=yqeF;go_function=acetyl-CoA C-acetyltransferase activity|0003985||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417321.2;locus_tag=AD39_RS08250;product=acetyl-CoA C-acetyltransferase;protein_id=WP_032198551.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 231215 232444 . + . ID=gene-AD39_RS08245;Name=yqeG;gbkey=Gene;gene=yqeG;gene_biotype=protein_coding;locus_tag=AD39_RS08245;old_locus_tag=AD39_3346 NZ_JJLH01000045.1 Protein Homology CDS 231215 232444 . + 0 ID=cds-WP_000065950.1;Parent=gene-AD39_RS08245;Dbxref=GenBank:WP_000065950.1;Name=WP_000065950.1;Ontology_term=GO:0003333,GO:0006865,GO:0055085,GO:0015171,GO:0022857,GO:0016020;gbkey=CDS;gene=yqeG;go_component=membrane|0016020||IEA;go_function=amino acid transmembrane transporter activity|0015171||IEA,transmembrane transporter activity|0022857||IEA;go_process=amino acid transmembrane transport|0003333||IEA,amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311729.1;locus_tag=AD39_RS08245;product=amino acid permease;protein_id=WP_000065950.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 232904 233536 . + . ID=gene-AD39_RS08240;Name=yqeH;gbkey=Gene;gene=yqeH;gene_biotype=protein_coding;locus_tag=AD39_RS08240;old_locus_tag=AD39_3347 NZ_JJLH01000045.1 Protein Homology CDS 232904 233536 . + 0 ID=cds-WP_001305805.1;Parent=gene-AD39_RS08240;Dbxref=GenBank:WP_001305805.1;Name=WP_001305805.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=yqeH;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417323.2;locus_tag=AD39_RS08240;product=helix-turn-helix transcriptional regulator;protein_id=WP_001305805.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 233870 234679 . + . ID=gene-AD39_RS08235;Name=yqeI;gbkey=Gene;gene=yqeI;gene_biotype=protein_coding;locus_tag=AD39_RS08235;old_locus_tag=AD39_3349 NZ_JJLH01000045.1 Protein Homology CDS 233870 234679 . + 0 ID=cds-WP_001295154.1;Parent=gene-AD39_RS08235;Dbxref=GenBank:WP_001295154.1;Name=WP_001295154.1;Ontology_term=GO:0003677;gbkey=CDS;gene=yqeI;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417324.1;locus_tag=AD39_RS08235;product=winged helix-turn-helix domain-containing protein;protein_id=WP_001295154.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 234672 235154 . + . ID=gene-AD39_RS08230;Name=yqeJ;gbkey=Gene;gene=yqeJ;gene_biotype=protein_coding;locus_tag=AD39_RS08230;old_locus_tag=AD39_3350 NZ_JJLH01000045.1 Protein Homology CDS 234672 235154 . + 0 ID=cds-WP_000568339.1;Parent=gene-AD39_RS08230;Dbxref=GenBank:WP_000568339.1;Name=WP_000568339.1;gbkey=CDS;gene=yqeJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417325.4;locus_tag=AD39_RS08230;product=protein YqeJ;protein_id=WP_000568339.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 235187 235267 . - . ID=gene-AD39_RS28670;Name=AD39_RS28670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28670 NZ_JJLH01000045.1 Protein Homology CDS 235187 235267 . - 0 ID=cds-WP_000655821.1;Parent=gene-AD39_RS28670;Dbxref=GenBank:WP_000655821.1;Name=WP_000655821.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791253.1;locus_tag=AD39_RS28670;product=hypothetical protein;protein_id=WP_000655821.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 235303 235728 . - . ID=gene-AD39_RS0125110;Name=yqeK;gbkey=Gene;gene=yqeK;gene_biotype=protein_coding;locus_tag=AD39_RS0125110 NZ_JJLH01000045.1 Protein Homology CDS 235303 235728 . - 0 ID=cds-WP_000350596.1;Parent=gene-AD39_RS0125110;Dbxref=GenBank:WP_000350596.1;Name=WP_000350596.1;gbkey=CDS;gene=yqeK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311733.2;locus_tag=AD39_RS0125110;product=protein YqeK;protein_id=WP_000350596.1;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 235922 236412 . + . ID=gene-AD39_RS0125115;Name=AD39_RS0125115;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125115;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 235922 236412 . + 0 ID=cds-AD39_RS0125115;Parent=gene-AD39_RS0125115;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311734.1;locus_tag=AD39_RS0125115;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 236637 237128 . + . ID=gene-AD39_RS08225;Name=ygeG;gbkey=Gene;gene=ygeG;gene_biotype=protein_coding;locus_tag=AD39_RS08225;old_locus_tag=AD39_3353 NZ_JJLH01000045.1 Protein Homology CDS 236637 237128 . + 0 ID=cds-WP_000102786.1;Parent=gene-AD39_RS08225;Dbxref=GenBank:WP_000102786.1;Name=WP_000102786.1;gbkey=CDS;gene=ygeG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417328.1;locus_tag=AD39_RS08225;product=tetratricopeptide repeat protein;protein_id=WP_000102786.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 237463 238839 . + . ID=gene-AD39_RS08220;Name=ygeH;gbkey=Gene;gene=ygeH;gene_biotype=protein_coding;locus_tag=AD39_RS08220;old_locus_tag=AD39_3354 NZ_JJLH01000045.1 Protein Homology CDS 237463 238839 . + 0 ID=cds-WP_000362704.1;Parent=gene-AD39_RS08220;Dbxref=GenBank:WP_000362704.1;Name=WP_000362704.1;gbkey=CDS;gene=ygeH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417329.1;locus_tag=AD39_RS08220;product=HilA family transcriptional regulator YgeH;protein_id=WP_000362704.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 239007 239225 . + . ID=gene-AD39_RS0125120;Name=ygeI;gbkey=Gene;gene=ygeI;gene_biotype=protein_coding;locus_tag=AD39_RS0125120 NZ_JJLH01000045.1 Protein Homology CDS 239007 239225 . + 0 ID=cds-WP_000184091.1;Parent=gene-AD39_RS0125120;Dbxref=GenBank:WP_000184091.1;Name=WP_000184091.1;gbkey=CDS;gene=ygeI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417330.1;locus_tag=AD39_RS0125120;product=protein YgeI;protein_id=WP_000184091.1;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 239308 239810 . + . ID=gene-AD39_RS0125125;Name=AD39_RS0125125;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125125;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 239308 239810 . + 0 ID=cds-AD39_RS0125125;Parent=gene-AD39_RS0125125;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019843029.1;locus_tag=AD39_RS0125125;product=lytic transglycosylase domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 239829 240461 . - . ID=gene-AD39_RS0125130;Name=AD39_RS0125130;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125130;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 239829 240461 . - 0 ID=cds-AD39_RS0125130;Parent=gene-AD39_RS0125130;Note=internal stop;Ontology_term=GO:0006355;gbkey=CDS;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311739.1;locus_tag=AD39_RS0125130;product=LuxR C-terminal-related transcriptional regulator;pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 240683 241114 . - . ID=gene-AD39_RS29580;Name=AD39_RS29580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29580 NZ_JJLH01000045.1 Protein Homology CDS 240683 241114 . - 0 ID=cds-WP_032283509.1;Parent=gene-AD39_RS29580;Dbxref=GenBank:WP_032283509.1;Name=WP_032283509.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001701978.1;locus_tag=AD39_RS29580;product=hypothetical protein;protein_id=WP_032283509.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 241117 241302 . - . ID=gene-AD39_RS30075;Name=AD39_RS30075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30075 NZ_JJLH01000045.1 Protein Homology CDS 241117 241302 . - 0 ID=cds-WP_146274757.1;Parent=gene-AD39_RS30075;Dbxref=GenBank:WP_146274757.1;Name=WP_146274757.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001364974.1;locus_tag=AD39_RS30075;product=hypothetical protein;protein_id=WP_146274757.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 241331 241912 . - . ID=gene-AD39_RS27505;Name=AD39_RS27505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS27505 NZ_JJLH01000045.1 Protein Homology CDS 241331 241912 . - 0 ID=cds-WP_001341846.1;Parent=gene-AD39_RS27505;Dbxref=GenBank:WP_001341846.1;Name=WP_001341846.1;Ontology_term=GO:0030254,GO:0030257;gbkey=CDS;go_component=type III protein secretion system complex|0030257||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311742.1;locus_tag=AD39_RS27505;product=type III secretion apparatus protein OrgA/MxiK;protein_id=WP_001341846.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 241928 242662 . - . ID=gene-AD39_RS08210;Name=AD39_RS08210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08210;old_locus_tag=AD39_3360 NZ_JJLH01000045.1 Protein Homology CDS 241928 242662 . - 0 ID=cds-WP_000875234.1;Parent=gene-AD39_RS08210;Dbxref=GenBank:WP_000875234.1;Name=WP_000875234.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311743.1;locus_tag=AD39_RS08210;product=EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein;protein_id=WP_000875234.1;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 242659 242990 . - . ID=gene-AD39_RS08205;Name=sctI;gbkey=Gene;gene=sctI;gene_biotype=pseudogene;locus_tag=AD39_RS08205;old_locus_tag=AD39_3361;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 242659 242990 . - 0 ID=cds-AD39_RS08205;Parent=gene-AD39_RS08205;Note=frameshifted;gbkey=CDS;gene=sctI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311744.1;locus_tag=AD39_RS08205;product=type III secretion system inner rod subunit SctI;pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 243010 243250 . - . ID=gene-AD39_RS27510;Name=AD39_RS27510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS27510;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 243010 243250 . - 0 ID=cds-AD39_RS27510;Parent=gene-AD39_RS27510;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311745.1;locus_tag=AD39_RS27510;product=type III secretion system needle complex protein;pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 243264 244445 . - . ID=gene-AD39_RS08195;Name=AD39_RS08195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08195;old_locus_tag=AD39_3363 NZ_JJLH01000045.1 Protein Homology CDS 243264 244445 . - 0 ID=cds-WP_001307376.1;Parent=gene-AD39_RS08195;Dbxref=GenBank:WP_001307376.1;Name=WP_001307376.1;Ontology_term=GO:0030254,GO:0030257;gbkey=CDS;go_component=type III protein secretion system complex|0030257||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001365813.1;locus_tag=AD39_RS08195;product=PrgH/EprH family type III secretion apparatus protein;protein_id=WP_001307376.1;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 244703 245203 . + . ID=gene-AD39_RS0125150;Name=AD39_RS0125150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125150;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 244703 245203 . + 0 ID=cds-AD39_RS0125150;Parent=gene-AD39_RS0125150;Note=internal stop;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311747.1;locus_tag=AD39_RS0125150;product=helix-turn-helix transcriptional regulator;pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 245205 245498 . + . ID=gene-AD39_RS08190;Name=AD39_RS08190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08190;old_locus_tag=AD39_3364 NZ_JJLH01000045.1 Protein Homology CDS 245205 245498 . + 0 ID=cds-WP_000060558.1;Parent=gene-AD39_RS08190;Dbxref=GenBank:WP_000060558.1;Name=WP_000060558.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000060689.1;locus_tag=AD39_RS08190;product=invasion protein;protein_id=WP_000060558.1;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 245559 246679 . - . ID=gene-AD39_RS08185;Name=AD39_RS08185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS08185;old_locus_tag=AD39_3366;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 245559 246679 . - 0 ID=cds-AD39_RS08185;Parent=gene-AD39_RS08185;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311748.1;locus_tag=AD39_RS08185;product=EscU/YscU/HrcU family type III secretion system export apparatus switch protein;pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 246688 247455 . - . ID=gene-AD39_RS08180;Name=sctT;gbkey=Gene;gene=sctT;gene_biotype=protein_coding;locus_tag=AD39_RS08180;old_locus_tag=AD39_3367 NZ_JJLH01000045.1 Protein Homology CDS 246688 247455 . - 0 ID=cds-WP_000503284.1;Parent=gene-AD39_RS08180;Dbxref=GenBank:WP_000503284.1;Name=WP_000503284.1;Ontology_term=GO:0030254,GO:0016020;gbkey=CDS;gene=sctT;go_component=membrane|0016020||IEA;go_process=protein secretion by the type III secretion system|0030254||IEA;inference=COORDINATES: protein motif:HMM:TIGR01401.1;locus_tag=AD39_RS08180;product=type III secretion system export apparatus subunit SctT;protein_id=WP_000503284.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 247457 247717 . - . ID=gene-AD39_RS08175;Name=AD39_RS08175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08175;old_locus_tag=AD39_3368 NZ_JJLH01000045.1 Protein Homology CDS 247457 247717 . - 0 ID=cds-WP_000341004.1;Parent=gene-AD39_RS08175;Dbxref=GenBank:WP_000341004.1;Name=WP_000341004.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311751.1;locus_tag=AD39_RS08175;product=EscS/YscS/HrcS family type III secretion system export apparatus protein;protein_id=WP_000341004.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 247727 248392 . - . ID=gene-AD39_RS0125160;Name=AD39_RS0125160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125160;old_locus_tag=AD39_3369 NZ_JJLH01000045.1 Protein Homology CDS 247727 248392 . - 0 ID=cds-WP_032283512.1;Parent=gene-AD39_RS0125160;Dbxref=GenBank:WP_032283512.1;Name=WP_032283512.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311752.1;locus_tag=AD39_RS0125160;product=EscR/YscR/HrcR family type III secretion system export apparatus protein;protein_id=WP_032283512.1;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 248382 249368 . - . ID=gene-AD39_RS29490;Name=AD39_RS29490;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29490;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 248382 249368 . - 0 ID=cds-AD39_RS29490;Parent=gene-AD39_RS29490;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311753.1;locus_tag=AD39_RS29490;product=YscQ/HrcQ family type III secretion apparatus protein;pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 249328 249447 . - . ID=gene-AD39_RS30080;Name=AD39_RS30080;end_range=249447,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30080;partial=true;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 249328 249447 . - 0 ID=cds-AD39_RS30080;Parent=gene-AD39_RS30080;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=249447,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000344669.1;locus_tag=AD39_RS30080;partial=true;product=type III secretion system needle length determinant%2C SpaN/EivJ family;pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 249460 251070 . - . ID=gene-AD39_RS08165;Name=AD39_RS08165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS08165;old_locus_tag=AD39_3371 NZ_JJLH01000045.1 Protein Homology CDS 249460 251070 . - 0 ID=cds-WP_001760244.1;Parent=gene-AD39_RS08165;Dbxref=GenBank:WP_001760244.1;Name=WP_001760244.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001613747.1;locus_tag=AD39_RS08165;product=glycoside hydrolase family 15 protein;protein_id=WP_001760244.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 251304 251377 . - . ID=gene-AD39_RS08160;Name=AD39_RS08160;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS08160;old_locus_tag=AD39_3372 NZ_JJLH01000045.1 tRNAscan-SE tRNA 251304 251377 . - . ID=rna-AD39_RS08160;Parent=gene-AD39_RS08160;anticodon=(pos:complement(251343..251345));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS08160;product=tRNA-Gly NZ_JJLH01000045.1 tRNAscan-SE exon 251304 251377 . - . ID=exon-AD39_RS08160-1;Parent=rna-AD39_RS08160;anticodon=(pos:complement(251343..251345));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS08160;product=tRNA-Gly NZ_JJLH01000045.1 RefSeq gene 251456 252211 . - . ID=gene-AD39_RS08155;Name=actS;gbkey=Gene;gene=actS;gene_biotype=protein_coding;locus_tag=AD39_RS08155;old_locus_tag=AD39_3373 NZ_JJLH01000045.1 Protein Homology CDS 251456 252211 . - 0 ID=cds-WP_001272558.1;Parent=gene-AD39_RS08155;Dbxref=GenBank:WP_001272558.1;Name=WP_001272558.1;gbkey=CDS;gene=actS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311765.2;locus_tag=AD39_RS08155;product=amidase activator ActS;protein_id=WP_001272558.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 252626 254923 . + . ID=gene-AD39_RS08150;Name=xdhA;gbkey=Gene;gene=xdhA;gene_biotype=protein_coding;locus_tag=AD39_RS08150;old_locus_tag=AD39_3374 NZ_JJLH01000045.1 Protein Homology CDS 252626 254923 . + 0 ID=cds-WP_000388150.1;Parent=gene-AD39_RS08150;Dbxref=GenBank:WP_000388150.1;Name=WP_000388150.1;Ontology_term=GO:0005506,GO:0016491;gbkey=CDS;gene=xdhA;go_function=iron ion binding|0005506||IEA,oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708647.1;locus_tag=AD39_RS08150;product=xanthine dehydrogenase molybdenum-binding subunit XdhA;protein_id=WP_000388150.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 254934 255812 . + . ID=gene-AD39_RS08145;Name=xdhB;gbkey=Gene;gene=xdhB;gene_biotype=protein_coding;locus_tag=AD39_RS08145;old_locus_tag=AD39_3375 NZ_JJLH01000045.1 Protein Homology CDS 254934 255812 . + 0 ID=cds-WP_000459182.1;Parent=gene-AD39_RS08145;Dbxref=GenBank:WP_000459182.1;Name=WP_000459182.1;Ontology_term=GO:0016491,GO:0071949;gbkey=CDS;gene=xdhB;go_function=oxidoreductase activity|0016491||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417343.1;locus_tag=AD39_RS08145;product=xanthine dehydrogenase FAD-binding subunit XdhB;protein_id=WP_000459182.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 255809 256288 . + . ID=gene-AD39_RS08140;Name=xdhC;gbkey=Gene;gene=xdhC;gene_biotype=protein_coding;locus_tag=AD39_RS08140;old_locus_tag=AD39_3376 NZ_JJLH01000045.1 Protein Homology CDS 255809 256288 . + 0 ID=cds-WP_001766263.1;Parent=gene-AD39_RS08140;Dbxref=GenBank:WP_001766263.1;Name=WP_001766263.1;gbkey=CDS;gene=xdhC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417344.1;locus_tag=AD39_RS08140;product=xanthine dehydrogenase iron sulfur-binding subunit XdhC;protein_id=WP_001766263.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 256328 258106 . - . ID=gene-AD39_RS08135;Name=ygeV;gbkey=Gene;gene=ygeV;gene_biotype=protein_coding;locus_tag=AD39_RS08135;old_locus_tag=AD39_3377 NZ_JJLH01000045.1 Protein Homology CDS 256328 258106 . - 0 ID=cds-WP_000417808.1;Parent=gene-AD39_RS08135;Dbxref=GenBank:WP_000417808.1;Name=WP_000417808.1;Ontology_term=GO:0006355,GO:0005524,GO:0008134;gbkey=CDS;gene=ygeV;go_function=ATP binding|0005524||IEA,transcription factor binding|0008134||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417345.1;locus_tag=AD39_RS08135;product=sigma-54 interaction domain-containing protein;protein_id=WP_000417808.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 258585 259772 . + . ID=gene-AD39_RS08130;Name=ygeW;gbkey=Gene;gene=ygeW;gene_biotype=protein_coding;locus_tag=AD39_RS08130;old_locus_tag=AD39_3378 NZ_JJLH01000045.1 Protein Homology CDS 258585 259772 . + 0 ID=cds-WP_001303128.1;Parent=gene-AD39_RS08130;Dbxref=GenBank:WP_001303128.1;Name=WP_001303128.1;gbkey=CDS;gene=ygeW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311770.2;locus_tag=AD39_RS08130;product=knotted carbamoyltransferase YgeW;protein_id=WP_001303128.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 259830 261026 . + . ID=gene-AD39_RS08125;Name=dpaL;gbkey=Gene;gene=dpaL;gene_biotype=protein_coding;locus_tag=AD39_RS08125;old_locus_tag=AD39_3379 NZ_JJLH01000045.1 Protein Homology CDS 259830 261026 . + 0 ID=cds-WP_000110493.1;Parent=gene-AD39_RS08125;Dbxref=GenBank:WP_000110493.1;Name=WP_000110493.1;Ontology_term=GO:0008838,GO:0030170;gbkey=CDS;gene=dpaL;go_function=diaminopropionate ammonia-lyase activity|0008838||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311771.1;locus_tag=AD39_RS08125;product=diaminopropionate ammonia-lyase;protein_id=WP_000110493.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 261084 262295 . + . ID=gene-AD39_RS08120;Name=ygeY;gbkey=Gene;gene=ygeY;gene_biotype=protein_coding;locus_tag=AD39_RS08120;old_locus_tag=AD39_3380 NZ_JJLH01000045.1 Protein Homology CDS 261084 262295 . + 0 ID=cds-WP_001107125.1;Parent=gene-AD39_RS08120;Dbxref=GenBank:WP_001107125.1;Name=WP_001107125.1;Ontology_term=GO:0016787;gbkey=CDS;gene=ygeY;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311772.1;locus_tag=AD39_RS08120;product=YgeY family selenium metabolism-linked hydrolase;protein_id=WP_001107125.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 262348 263733 . + . ID=gene-AD39_RS08115;Name=hyuA;gbkey=Gene;gene=hyuA;gene_biotype=protein_coding;locus_tag=AD39_RS08115;old_locus_tag=AD39_3381 NZ_JJLH01000045.1 Protein Homology CDS 262348 263733 . + 0 ID=cds-WP_001264452.1;Parent=gene-AD39_RS08115;Dbxref=GenBank:WP_001264452.1;Name=WP_001264452.1;gbkey=CDS;gene=hyuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311773.2;locus_tag=AD39_RS08115;product=D-phenylhydantoinase;protein_id=WP_001264452.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 263781 264713 . + . ID=gene-AD39_RS08110;Name=arcC;gbkey=Gene;gene=arcC;gene_biotype=protein_coding;locus_tag=AD39_RS08110;old_locus_tag=AD39_3382 NZ_JJLH01000045.1 Protein Homology CDS 263781 264713 . + 0 ID=cds-WP_032186664.1;Parent=gene-AD39_RS08110;Dbxref=GenBank:WP_032186664.1;Name=WP_032186664.1;Ontology_term=GO:0006520,GO:0008804;gbkey=CDS;gene=arcC;go_function=carbamate kinase activity|0008804||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417350.1;locus_tag=AD39_RS08110;product=carbamate kinase;protein_id=WP_032186664.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 264754 266379 . - . ID=gene-AD39_RS08105;Name=yqeB;gbkey=Gene;gene=yqeB;gene_biotype=protein_coding;locus_tag=AD39_RS08105;old_locus_tag=AD39_3383 NZ_JJLH01000045.1 Protein Homology CDS 264754 266379 . - 0 ID=cds-WP_032287612.1;Parent=gene-AD39_RS08105;Dbxref=GenBank:WP_032287612.1;Name=WP_032287612.1;gbkey=CDS;gene=yqeB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417351.1;locus_tag=AD39_RS08105;product=selenium-dependent molybdenum cofactor biosynthesis protein YqeB;protein_id=WP_032287612.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 266427 267197 . - . ID=gene-AD39_RS08100;Name=yqeC;gbkey=Gene;gene=yqeC;gene_biotype=protein_coding;locus_tag=AD39_RS08100;old_locus_tag=AD39_3384 NZ_JJLH01000045.1 Protein Homology CDS 266427 267197 . - 0 ID=cds-WP_000835703.1;Parent=gene-AD39_RS08100;Dbxref=GenBank:WP_000835703.1;Name=WP_000835703.1;gbkey=CDS;gene=yqeC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417352.2;locus_tag=AD39_RS08100;product=selenium cofactor biosynthesis protein YqeC;protein_id=WP_000835703.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 267300 267878 . + . ID=gene-AD39_RS08095;Name=mocA;gbkey=Gene;gene=mocA;gene_biotype=protein_coding;locus_tag=AD39_RS08095;old_locus_tag=AD39_3385 NZ_JJLH01000045.1 Protein Homology CDS 267300 267878 . + 0 ID=cds-WP_001272834.1;Parent=gene-AD39_RS08095;Dbxref=GenBank:WP_001272834.1;Name=WP_001272834.1;Ontology_term=GO:0032324,GO:0070567;gbkey=CDS;gene=mocA;go_function=cytidylyltransferase activity|0070567||IEA;go_process=molybdopterin cofactor biosynthetic process|0032324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417353.1;locus_tag=AD39_RS08095;product=molybdenum cofactor cytidylyltransferase;protein_id=WP_001272834.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 268200 271298 . + . ID=gene-AD39_RS08090;Name=ygfK;gbkey=Gene;gene=ygfK;gene_biotype=protein_coding;locus_tag=AD39_RS08090;old_locus_tag=AD39_3386 NZ_JJLH01000045.1 Protein Homology CDS 268200 271298 . + 0 ID=cds-WP_001668802.1;Parent=gene-AD39_RS08090;Dbxref=GenBank:WP_001668802.1;Name=WP_001668802.1;Ontology_term=GO:0016491,GO:0051536;gbkey=CDS;gene=ygfK;go_function=oxidoreductase activity|0016491||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311778.1;locus_tag=AD39_RS08090;product=putative selenate reductase subunit YgfK;protein_id=WP_001668802.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 271301 272629 . + . ID=gene-AD39_RS08085;Name=ssnA;gbkey=Gene;gene=ssnA;gene_biotype=protein_coding;locus_tag=AD39_RS08085;old_locus_tag=AD39_3387 NZ_JJLH01000045.1 Protein Homology CDS 271301 272629 . + 0 ID=cds-WP_000906274.1;Parent=gene-AD39_RS08085;Dbxref=GenBank:WP_000906274.1;Name=WP_000906274.1;Ontology_term=GO:0016810;gbkey=CDS;gene=ssnA;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311779.1;locus_tag=AD39_RS08085;product=putative aminohydrolase SsnA;protein_id=WP_000906274.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 272680 273459 . + . ID=gene-AD39_RS08080;Name=ygfM;gbkey=Gene;gene=ygfM;gene_biotype=protein_coding;locus_tag=AD39_RS08080;old_locus_tag=AD39_3388 NZ_JJLH01000045.1 Protein Homology CDS 272680 273459 . + 0 ID=cds-WP_000572468.1;Parent=gene-AD39_RS08080;Dbxref=GenBank:WP_000572468.1;Name=WP_000572468.1;gbkey=CDS;gene=ygfM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311780.1;locus_tag=AD39_RS08080;product=molybdopterin-dependent oxidoreductase FAD-binding subunit;protein_id=WP_000572468.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 273456 276326 . + . ID=gene-AD39_RS08075;Name=xdhD;gbkey=Gene;gene=xdhD;gene_biotype=protein_coding;locus_tag=AD39_RS08075;old_locus_tag=AD39_3389 NZ_JJLH01000045.1 Protein Homology CDS 273456 276326 . + 0 ID=cds-WP_000583616.1;Parent=gene-AD39_RS08075;Dbxref=GenBank:WP_000583616.1;Name=WP_000583616.1;gbkey=CDS;gene=xdhD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417357.1;locus_tag=AD39_RS08075;product=molybdopterin-dependent oxidoreductase Mo/Fe-S-binding subunit;protein_id=WP_000583616.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 276491 277891 . + . ID=gene-AD39_RS08070;Name=xanQ;gbkey=Gene;gene=xanQ;gene_biotype=protein_coding;locus_tag=AD39_RS08070;old_locus_tag=AD39_3390 NZ_JJLH01000045.1 Protein Homology CDS 276491 277891 . + 0 ID=cds-WP_032216732.1;Parent=gene-AD39_RS08070;Dbxref=GenBank:WP_032216732.1;Name=WP_032216732.1;gbkey=CDS;gene=xanQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417358.2;locus_tag=AD39_RS08070;product=xanthine/proton symporter XanQ;protein_id=WP_032216732.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 277909 279225 . + . ID=gene-AD39_RS08065;Name=guaD;gbkey=Gene;gene=guaD;gene_biotype=protein_coding;locus_tag=AD39_RS08065;old_locus_tag=AD39_3391 NZ_JJLH01000045.1 Protein Homology CDS 277909 279225 . + 0 ID=cds-WP_001295158.1;Parent=gene-AD39_RS08065;Dbxref=GenBank:WP_001295158.1;Name=WP_001295158.1;Ontology_term=GO:0006147,GO:0008270,GO:0008892;gbkey=CDS;gene=guaD;go_function=zinc ion binding|0008270||IEA,guanine deaminase activity|0008892||IEA;go_process=guanine catabolic process|0006147||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311783.2;locus_tag=AD39_RS08065;product=guanine deaminase;protein_id=WP_001295158.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 279261 280628 . + . ID=gene-AD39_RS08060;Name=ghxQ;gbkey=Gene;gene=ghxQ;gene_biotype=protein_coding;gene_synonym=ygfQ;locus_tag=AD39_RS08060;old_locus_tag=AD39_3392 NZ_JJLH01000045.1 Protein Homology CDS 279261 280628 . + 0 ID=cds-WP_000012163.1;Parent=gene-AD39_RS08060;Dbxref=GenBank:WP_000012163.1;Name=WP_000012163.1;gbkey=CDS;gene=ghxQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311784.1;locus_tag=AD39_RS08060;product=guanine/hypoxanthine transporter GhxQ;protein_id=WP_000012163.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 280664 281152 . - . ID=gene-AD39_RS08055;Name=ygfS;gbkey=Gene;gene=ygfS;gene_biotype=protein_coding;locus_tag=AD39_RS08055;old_locus_tag=AD39_3393 NZ_JJLH01000045.1 Protein Homology CDS 280664 281152 . - 0 ID=cds-WP_000838428.1;Parent=gene-AD39_RS08055;Dbxref=GenBank:WP_000838428.1;Name=WP_000838428.1;Ontology_term=GO:0009061,GO:0019645,GO:0046872,GO:0051539;gbkey=CDS;gene=ygfS;go_function=metal ion binding|0046872||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=anaerobic respiration|0009061||IEA,anaerobic electron transport chain|0019645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417362.4;locus_tag=AD39_RS08055;product=4Fe-4S dicluster domain-containing protein;protein_id=WP_000838428.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 281152 283071 . - . ID=gene-AD39_RS08050;Name=ygfT;gbkey=Gene;gene=ygfT;gene_biotype=protein_coding;locus_tag=AD39_RS08050;old_locus_tag=AD39_3394 NZ_JJLH01000045.1 Protein Homology CDS 281152 283071 . - 0 ID=cds-WP_032239983.1;Parent=gene-AD39_RS08050;Dbxref=GenBank:WP_032239983.1;Name=WP_032239983.1;Ontology_term=GO:0016491,GO:0051536;gbkey=CDS;gene=ygfT;go_function=oxidoreductase activity|0016491||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417363.2;locus_tag=AD39_RS08050;product=formate-dependent uric acid utilization protein YgfT;protein_id=WP_032239983.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 283507 284955 . + . ID=gene-AD39_RS08045;Name=uacT;gbkey=Gene;gene=uacT;gene_biotype=protein_coding;locus_tag=AD39_RS08045;old_locus_tag=AD39_3395 NZ_JJLH01000045.1 Protein Homology CDS 283507 284955 . + 0 ID=cds-WP_001295374.1;Parent=gene-AD39_RS08045;Dbxref=GenBank:WP_001295374.1;Name=WP_001295374.1;gbkey=CDS;gene=uacT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417364.2;locus_tag=AD39_RS08045;product=urate/proton symporter UacT;protein_id=WP_001295374.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 284957 285082 . + . ID=gene-AD39_RS08040;Name=yqfG;gbkey=Gene;gene=yqfG;gene_biotype=protein_coding;locus_tag=AD39_RS08040;old_locus_tag=AD39_3396 NZ_JJLH01000045.1 Protein Homology CDS 284957 285082 . + 0 ID=cds-WP_001050745.1;Parent=gene-AD39_RS08040;Dbxref=GenBank:WP_001050745.1;Name=WP_001050745.1;gbkey=CDS;gene=yqfG;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791254.1;locus_tag=AD39_RS08040;product=protein YqfG;protein_id=WP_001050745.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 285079 285150 . - . ID=gene-AD39_RS29205;Name=AD39_RS29205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29205 NZ_JJLH01000045.1 Protein Homology CDS 285079 285150 . - 0 ID=cds-WP_120795390.1;Parent=gene-AD39_RS29205;Dbxref=GenBank:WP_120795390.1;Name=WP_120795390.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518812.1;locus_tag=AD39_RS29205;product=protein YqfH;protein_id=WP_120795390.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 285205 285753 . + . ID=gene-AD39_RS08035;Name=idi;gbkey=Gene;gene=idi;gene_biotype=protein_coding;locus_tag=AD39_RS08035;old_locus_tag=AD39_3397 NZ_JJLH01000045.1 Protein Homology CDS 285205 285753 . + 0 ID=cds-WP_001192814.1;Parent=gene-AD39_RS08035;Dbxref=GenBank:WP_001192814.1;Name=WP_001192814.1;Ontology_term=GO:0008299,GO:0004452;gbkey=CDS;gene=idi;go_function=isopentenyl-diphosphate delta-isomerase activity|0004452||IEA;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311788.1;locus_tag=AD39_RS08035;product=isopentenyl-diphosphate Delta-isomerase;protein_id=WP_001192814.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 285796 287313 . - . ID=gene-AD39_RS08030;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=AD39_RS08030;old_locus_tag=AD39_3398 NZ_JJLH01000045.1 Protein Homology CDS 285796 287313 . - 0 ID=cds-WP_001482877.1;Parent=gene-AD39_RS08030;Dbxref=GenBank:WP_001482877.1;Name=WP_001482877.1;Ontology_term=GO:0006430,GO:0004824,GO:0005524,GO:0005737;gbkey=CDS;gene=lysS;go_component=cytoplasm|0005737||IEA;go_function=lysine-tRNA ligase activity|0004824||IEA,ATP binding|0005524||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001740376.1;locus_tag=AD39_RS08030;product=lysine--tRNA ligase;protein_id=WP_001482877.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 287323 288421 . - . ID=gene-AD39_RS08025;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;locus_tag=AD39_RS08025;old_locus_tag=AD39_3399 NZ_JJLH01000045.1 Protein Homology CDS 288347 288421 . - 0 ID=cds-WP_001701073.1;Parent=gene-AD39_RS08025;Dbxref=GenBank:WP_001701073.1;Name=WP_001701073.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0016149,GO:0005737;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_component=cytoplasm|0005737||IEA;go_function=translation release factor activity%2C codon specific|0016149||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311790.1;locus_tag=AD39_RS08025;product=peptide chain release factor 2;protein_id=WP_001701073.1;transl_table=11 NZ_JJLH01000045.1 Protein Homology CDS 287323 288345 . - 0 ID=cds-WP_001701073.1;Parent=gene-AD39_RS08025;Dbxref=GenBank:WP_001701073.1;Name=WP_001701073.1;Note=programmed frameshift;Ontology_term=GO:0006415,GO:0016149,GO:0005737;exception=ribosomal slippage;gbkey=CDS;gene=prfB;go_component=cytoplasm|0005737||IEA;go_function=translation release factor activity%2C codon specific|0016149||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311790.1;locus_tag=AD39_RS08025;product=peptide chain release factor 2;protein_id=WP_001701073.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 288512 290245 . - . ID=gene-AD39_RS08020;Name=recJ;gbkey=Gene;gene=recJ;gene_biotype=protein_coding;locus_tag=AD39_RS08020;old_locus_tag=AD39_3401 NZ_JJLH01000045.1 Protein Homology CDS 288512 290245 . - 0 ID=cds-WP_032287613.1;Parent=gene-AD39_RS08020;Dbxref=GenBank:WP_032287613.1;Name=WP_032287613.1;Ontology_term=GO:0006281,GO:0006310,GO:0008409;gbkey=CDS;gene=recJ;go_function=5'-3' exonuclease activity|0008409||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708656.1;locus_tag=AD39_RS08020;product=single-stranded-DNA-specific exonuclease RecJ;protein_id=WP_032287613.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 290251 290961 . - . ID=gene-AD39_RS08015;Name=dsbC;gbkey=Gene;gene=dsbC;gene_biotype=protein_coding;locus_tag=AD39_RS08015;old_locus_tag=AD39_3402 NZ_JJLH01000045.1 Protein Homology CDS 290251 290961 . - 0 ID=cds-WP_000715208.1;Parent=gene-AD39_RS08015;Dbxref=GenBank:WP_000715208.1;Name=WP_000715208.1;Ontology_term=GO:0042597;gbkey=CDS;gene=dsbC;go_component=periplasmic space|0042597||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311792.1;locus_tag=AD39_RS08015;product=bifunctional protein-disulfide isomerase/oxidoreductase DsbC;protein_id=WP_000715208.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 290986 291882 . - . ID=gene-AD39_RS08010;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=AD39_RS08010;old_locus_tag=AD39_3403 NZ_JJLH01000045.1 Protein Homology CDS 290986 291882 . - 0 ID=cds-WP_000806638.1;Parent=gene-AD39_RS08010;Dbxref=GenBank:WP_000806638.1;Name=WP_000806638.1;Ontology_term=GO:0006310,GO:0009009;gbkey=CDS;gene=xerD;go_function=site-specific recombinase activity|0009009||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417370.1;locus_tag=AD39_RS08010;product=site-specific tyrosine recombinase XerD;protein_id=WP_000806638.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 291994 292515 . + . ID=gene-AD39_RS08005;Name=fldB;gbkey=Gene;gene=fldB;gene_biotype=protein_coding;locus_tag=AD39_RS08005;old_locus_tag=AD39_3404 NZ_JJLH01000045.1 Protein Homology CDS 291994 292515 . + 0 ID=cds-WP_001055874.1;Parent=gene-AD39_RS08005;Dbxref=GenBank:WP_001055874.1;Name=WP_001055874.1;Ontology_term=GO:0009055,GO:0010181;gbkey=CDS;gene=fldB;go_function=electron transfer activity|0009055||IEA,FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311794.1;locus_tag=AD39_RS08005;product=flavodoxin FldB;protein_id=WP_001055874.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 292555 292962 . - . ID=gene-AD39_RS08000;Name=ygfX;gbkey=Gene;gene=ygfX;gene_biotype=protein_coding;locus_tag=AD39_RS08000;old_locus_tag=AD39_3405 NZ_JJLH01000045.1 Protein Homology CDS 292555 292962 . - 0 ID=cds-WP_000244781.1;Parent=gene-AD39_RS08000;Dbxref=GenBank:WP_000244781.1;Name=WP_000244781.1;gbkey=CDS;gene=ygfX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311795.1;locus_tag=AD39_RS08000;product=protein YgfX;protein_id=WP_000244781.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 292943 293209 . - . ID=gene-AD39_RS07995;Name=sdhE;gbkey=Gene;gene=sdhE;gene_biotype=protein_coding;locus_tag=AD39_RS07995;old_locus_tag=AD39_3406 NZ_JJLH01000045.1 Protein Homology CDS 292943 293209 . - 0 ID=cds-WP_000354046.1;Parent=gene-AD39_RS07995;Dbxref=GenBank:WP_000354046.1;Name=WP_000354046.1;gbkey=CDS;gene=sdhE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000354044.1;locus_tag=AD39_RS07995;product=FAD assembly factor SdhE;protein_id=WP_000354046.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 293452 294432 . + . ID=gene-AD39_RS07990;Name=ygfZ;gbkey=Gene;gene=ygfZ;gene_biotype=protein_coding;locus_tag=AD39_RS07990;old_locus_tag=AD39_3408 NZ_JJLH01000045.1 Protein Homology CDS 293452 294432 . + 0 ID=cds-WP_000886095.1;Parent=gene-AD39_RS07990;Dbxref=GenBank:WP_000886095.1;Name=WP_000886095.1;Ontology_term=GO:0009451,GO:0005542;gbkey=CDS;gene=ygfZ;go_function=folic acid binding|0005542||IEA;go_process=RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417374.1;locus_tag=AD39_RS07990;product=tRNA-modifying protein YgfZ;protein_id=WP_000886095.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 294628 295287 . - . ID=gene-AD39_RS07985;Name=trhA;gbkey=Gene;gene=trhA;gene_biotype=protein_coding;locus_tag=AD39_RS07985;old_locus_tag=AD39_3409 NZ_JJLH01000045.1 Protein Homology CDS 294628 295287 . - 0 ID=cds-WP_000250274.1;Parent=gene-AD39_RS07985;Dbxref=GenBank:WP_000250274.1;Name=WP_000250274.1;Ontology_term=GO:0019835;gbkey=CDS;gene=trhA;go_process=cytolysis|0019835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311798.1;locus_tag=AD39_RS07985;product=PAQR family membrane homeostasis protein TrhA;protein_id=WP_000250274.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 295451 295762 . - . ID=gene-AD39_RS07980;Name=yqfB;gbkey=Gene;gene=yqfB;gene_biotype=protein_coding;locus_tag=AD39_RS07980;old_locus_tag=AD39_3410 NZ_JJLH01000045.1 Protein Homology CDS 295451 295762 . - 0 ID=cds-WP_001182954.1;Parent=gene-AD39_RS07980;Dbxref=GenBank:WP_001182954.1;Name=WP_001182954.1;gbkey=CDS;gene=yqfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311799.1;locus_tag=AD39_RS07980;product=N(4)-acetylcytidine aminohydrolase;protein_id=WP_001182954.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 295807 297240 . + . ID=gene-AD39_RS07975;Name=bglA;gbkey=Gene;gene=bglA;gene_biotype=protein_coding;locus_tag=AD39_RS07975;old_locus_tag=AD39_3411 NZ_JJLH01000045.1 Protein Homology CDS 295807 297240 . + 0 ID=cds-WP_032283547.1;Parent=gene-AD39_RS07975;Dbxref=GenBank:WP_032283547.1;Name=WP_032283547.1;gbkey=CDS;gene=bglA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708664.2;locus_tag=AD39_RS07975;product=6-phospho-beta-glucosidase BglA;protein_id=WP_032283547.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 297297 298040 . - . ID=gene-AD39_RS07970;Name=ygfF;gbkey=Gene;gene=ygfF;gene_biotype=protein_coding;locus_tag=AD39_RS07970;old_locus_tag=AD39_3412 NZ_JJLH01000045.1 Protein Homology CDS 297297 298040 . - 0 ID=cds-WP_000951961.1;Parent=gene-AD39_RS07970;Dbxref=GenBank:WP_000951961.1;Name=WP_000951961.1;Ontology_term=GO:0016491;gbkey=CDS;gene=ygfF;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417378.1;locus_tag=AD39_RS07970;product=SDR family oxidoreductase;protein_id=WP_000951961.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 298306 301179 . - . ID=gene-AD39_RS07965;Name=gcvP;gbkey=Gene;gene=gcvP;gene_biotype=protein_coding;locus_tag=AD39_RS07965;old_locus_tag=AD39_3413 NZ_JJLH01000045.1 Protein Homology CDS 298306 301179 . - 0 ID=cds-WP_000195023.1;Parent=gene-AD39_RS07965;Dbxref=GenBank:WP_000195023.1;Name=WP_000195023.1;Ontology_term=GO:0019464,GO:0004375;gbkey=CDS;gene=gcvP;go_function=glycine dehydrogenase (decarboxylating) activity|0004375||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417379.1;locus_tag=AD39_RS07965;product=aminomethyl-transferring glycine dehydrogenase;protein_id=WP_000195023.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 301298 301687 . - . ID=gene-AD39_RS07960;Name=gcvH;gbkey=Gene;gene=gcvH;gene_biotype=protein_coding;locus_tag=AD39_RS07960;old_locus_tag=AD39_3414 NZ_JJLH01000045.1 Protein Homology CDS 301298 301687 . - 0 ID=cds-WP_001295377.1;Parent=gene-AD39_RS07960;Dbxref=GenBank:WP_001295377.1;Name=WP_001295377.1;Ontology_term=GO:0019464,GO:0005960;gbkey=CDS;gene=gcvH;go_component=glycine cleavage complex|0005960||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123344.1;locus_tag=AD39_RS07960;product=glycine cleavage system protein GcvH;protein_id=WP_001295377.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 301711 302805 . - . ID=gene-AD39_RS07955;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=AD39_RS07955;old_locus_tag=AD39_3415 NZ_JJLH01000045.1 Protein Homology CDS 301711 302805 . - 0 ID=cds-WP_000068701.1;Parent=gene-AD39_RS07955;Dbxref=GenBank:WP_000068701.1;Name=WP_000068701.1;Ontology_term=GO:0019464,GO:0004047,GO:0005737;gbkey=CDS;gene=gcvT;go_component=cytoplasm|0005737||IEA;go_function=aminomethyltransferase activity|0004047||IEA;go_process=glycine decarboxylation via glycine cleavage system|0019464||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417381.1;locus_tag=AD39_RS07955;product=glycine cleavage system aminomethyltransferase GcvT;protein_id=WP_000068701.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 303096 303179 . + . ID=gene-AD39_RS29210;Name=AD39_RS29210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29210 NZ_JJLH01000045.1 Protein Homology CDS 303096 303179 . + 0 ID=cds-WP_122633141.1;Parent=gene-AD39_RS29210;Dbxref=GenBank:WP_122633141.1;Name=WP_122633141.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518813.1;locus_tag=AD39_RS29210;product=hypothetical protein;protein_id=WP_122633141.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 303253 304455 . - . ID=gene-AD39_RS07950;Name=ubiI;gbkey=Gene;gene=ubiI;gene_biotype=protein_coding;gene_synonym=visC;locus_tag=AD39_RS07950;old_locus_tag=AD39_3417 NZ_JJLH01000045.1 Protein Homology CDS 303253 304455 . - 0 ID=cds-WP_001192185.1;Parent=gene-AD39_RS07950;Dbxref=GenBank:WP_001192185.1;Name=WP_001192185.1;Ontology_term=GO:0006744,GO:0016709,GO:0071949;gbkey=CDS;gene=ubiI;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA,FAD binding|0071949||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311804.1;locus_tag=AD39_RS07950;product=FAD-dependent 2-octaprenylphenol hydroxylase;protein_id=WP_001192185.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 304478 305656 . - . ID=gene-AD39_RS07945;Name=ubiH;gbkey=Gene;gene=ubiH;gene_biotype=protein_coding;gene_synonym=visB;locus_tag=AD39_RS07945;old_locus_tag=AD39_3418 NZ_JJLH01000045.1 Protein Homology CDS 304478 305656 . - 0 ID=cds-WP_000111225.1;Parent=gene-AD39_RS07945;Dbxref=GenBank:WP_000111225.1;Name=WP_000111225.1;Ontology_term=GO:0006744,GO:0008681,GO:0016709,GO:0071949;gbkey=CDS;gene=ubiH;go_function=2-octaprenyl-6-methoxyphenol hydroxylase activity|0008681||IEA,oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NAD(P)H as one donor%2C and incorporation of one atom of oxygen|0016709||IEA,FAD binding|0071949||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417383.1;locus_tag=AD39_RS07945;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=WP_000111225.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 305653 306978 . - . ID=gene-AD39_RS07940;Name=pepP;gbkey=Gene;gene=pepP;gene_biotype=protein_coding;locus_tag=AD39_RS07940;old_locus_tag=AD39_3419 NZ_JJLH01000045.1 Protein Homology CDS 305653 306978 . - 0 ID=cds-WP_001280389.1;Parent=gene-AD39_RS07940;Dbxref=GenBank:WP_001280389.1;Name=WP_001280389.1;Ontology_term=GO:0070006;gbkey=CDS;gene=pepP;go_function=metalloaminopeptidase activity|0070006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311806.1;locus_tag=AD39_RS07940;product=Xaa-Pro aminopeptidase;protein_id=WP_001280389.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 307004 307582 . - . ID=gene-AD39_RS07935;Name=ygfB;gbkey=Gene;gene=ygfB;gene_biotype=protein_coding;locus_tag=AD39_RS07935;old_locus_tag=AD39_3420 NZ_JJLH01000045.1 Protein Homology CDS 307004 307582 . - 0 ID=cds-WP_001295378.1;Parent=gene-AD39_RS07935;Dbxref=GenBank:WP_001295378.1;Name=WP_001295378.1;gbkey=CDS;gene=ygfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708672.2;locus_tag=AD39_RS07935;product=UPF0149 family protein YgfB;protein_id=WP_001295378.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 307750 308079 . + . ID=gene-AD39_RS07930;Name=zapA;gbkey=Gene;gene=zapA;gene_biotype=protein_coding;locus_tag=AD39_RS07930;old_locus_tag=AD39_3421 NZ_JJLH01000045.1 Protein Homology CDS 307750 308079 . + 0 ID=cds-WP_001276008.1;Parent=gene-AD39_RS07930;Dbxref=GenBank:WP_001276008.1;Name=WP_001276008.1;gbkey=CDS;gene=zapA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311808.1;locus_tag=AD39_RS07930;product=cell division protein ZapA;protein_id=WP_001276008.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 308121 308304 . + . ID=gene-AD39_RS26235;Name=ssrS;gbkey=Gene;gene=ssrS;gene_biotype=ncRNA;locus_tag=AD39_RS26235 NZ_JJLH01000045.1 cmsearch ncRNA 308121 308304 . + . ID=rna-AD39_RS26235;Parent=gene-AD39_RS26235;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26235;product=6S RNA NZ_JJLH01000045.1 cmsearch exon 308121 308304 . + . ID=exon-AD39_RS26235-1;Parent=rna-AD39_RS26235;Dbxref=RFAM:RF00013;gbkey=ncRNA;gene=ssrS;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26235;product=6S RNA NZ_JJLH01000045.1 RefSeq gene 308325 308927 . + . ID=gene-AD39_RS07925;Name=fau;gbkey=Gene;gene=fau;gene_biotype=protein_coding;locus_tag=AD39_RS07925;old_locus_tag=AD39_3422 NZ_JJLH01000045.1 Protein Homology CDS 308325 308927 . + 0 ID=cds-WP_001392616.1;Parent=gene-AD39_RS07925;Dbxref=GenBank:WP_001392616.1;Name=WP_001392616.1;gbkey=CDS;gene=fau;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311809.4;locus_tag=AD39_RS07925;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_001392616.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 309028 309087 . - . ID=gene-AD39_RS29215;Name=AD39_RS29215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29215 NZ_JJLH01000045.1 Protein Homology CDS 309028 309087 . - 0 ID=cds-WP_001387035.1;Parent=gene-AD39_RS29215;Dbxref=GenBank:WP_001387035.1;Name=WP_001387035.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791255.1;locus_tag=AD39_RS29215;product=type I toxin-antitoxin system Ibs family toxin;protein_id=WP_001387035.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 309420 309479 . - . ID=gene-AD39_RS27545;Name=ibsC;gbkey=Gene;gene=ibsC;gene_biotype=protein_coding;locus_tag=AD39_RS27545 NZ_JJLH01000045.1 Protein Homology CDS 309420 309479 . - 0 ID=cds-WP_071524576.1;Parent=gene-AD39_RS27545;Dbxref=GenBank:WP_071524576.1;Name=WP_071524576.1;gbkey=CDS;gene=ibsC;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791255.1;locus_tag=AD39_RS27545;product=type I toxin-antitoxin system toxin IbsC;protein_id=WP_071524576.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 309708 310940 . - . ID=gene-AD39_RS07920;Name=serA;gbkey=Gene;gene=serA;gene_biotype=protein_coding;locus_tag=AD39_RS07920;old_locus_tag=AD39_3424 NZ_JJLH01000045.1 Protein Homology CDS 309708 310940 . - 0 ID=cds-WP_001151604.1;Parent=gene-AD39_RS07920;Dbxref=GenBank:WP_001151604.1;Name=WP_001151604.1;Ontology_term=GO:0016616,GO:0051287;gbkey=CDS;gene=serA;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311811.1;locus_tag=AD39_RS07920;product=phosphoglycerate dehydrogenase;protein_id=WP_001151604.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 311196 311855 . - . ID=gene-AD39_RS07915;Name=rpiA;gbkey=Gene;gene=rpiA;gene_biotype=protein_coding;locus_tag=AD39_RS07915;old_locus_tag=AD39_3426 NZ_JJLH01000045.1 Protein Homology CDS 311196 311855 . - 0 ID=cds-WP_001402518.1;Parent=gene-AD39_RS07915;Dbxref=GenBank:WP_001402518.1;Name=WP_001402518.1;Ontology_term=GO:0009052,GO:0004751;gbkey=CDS;gene=rpiA;go_function=ribose-5-phosphate isomerase activity|0004751||IEA;go_process=pentose-phosphate shunt%2C non-oxidative branch|0009052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311812.1;locus_tag=AD39_RS07915;product=ribose-5-phosphate isomerase RpiA;protein_id=WP_001402518.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 311911 312141 . - . ID=gene-AD39_RS07910;Name=AD39_RS07910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07910;old_locus_tag=AD39_3427 NZ_JJLH01000045.1 Protein Homology CDS 311911 312141 . - 0 ID=cds-WP_001307386.1;Parent=gene-AD39_RS07910;Dbxref=GenBank:WP_001307386.1;Name=WP_001307386.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001328908.1;locus_tag=AD39_RS07910;product=hypothetical protein;protein_id=WP_001307386.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 312283 313176 . + . ID=gene-AD39_RS07905;Name=argP;gbkey=Gene;gene=argP;gene_biotype=protein_coding;locus_tag=AD39_RS07905;old_locus_tag=AD39_3428 NZ_JJLH01000045.1 Protein Homology CDS 312283 313176 . + 0 ID=cds-WP_000828351.1;Parent=gene-AD39_RS07905;Dbxref=GenBank:WP_000828351.1;Name=WP_000828351.1;gbkey=CDS;gene=argP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311813.1;locus_tag=AD39_RS07905;product=DNA-binding transcriptional regulator ArgP;protein_id=WP_000828351.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 313380 315524 . + . ID=gene-AD39_RS07900;Name=scpA;gbkey=Gene;gene=scpA;gene_biotype=protein_coding;locus_tag=AD39_RS07900;old_locus_tag=AD39_3429 NZ_JJLH01000045.1 Protein Homology CDS 313380 315524 . + 0 ID=cds-WP_032287614.1;Parent=gene-AD39_RS07900;Dbxref=GenBank:WP_032287614.1;Name=WP_032287614.1;Ontology_term=GO:0004494,GO:0031419,GO:0046872;gbkey=CDS;gene=scpA;go_function=methylmalonyl-CoA mutase activity|0004494||IEA,cobalamin binding|0031419||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417392.1;locus_tag=AD39_RS07900;product=methylmalonyl-CoA mutase;protein_id=WP_032287614.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 315517 316512 . + . ID=gene-AD39_RS07895;Name=meaB;gbkey=Gene;gene=meaB;gene_biotype=protein_coding;locus_tag=AD39_RS07895;old_locus_tag=AD39_3430 NZ_JJLH01000045.1 Protein Homology CDS 315517 316512 . + 0 ID=cds-WP_000606526.1;Parent=gene-AD39_RS07895;Dbxref=GenBank:WP_000606526.1;Name=WP_000606526.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=meaB;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417393.1;locus_tag=AD39_RS07895;product=methylmalonyl Co-A mutase-associated GTPase MeaB;protein_id=WP_000606526.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 316523 317308 . + . ID=gene-AD39_RS07890;Name=scpB;gbkey=Gene;gene=scpB;gene_biotype=protein_coding;locus_tag=AD39_RS07890;old_locus_tag=AD39_3431 NZ_JJLH01000045.1 Protein Homology CDS 316523 317308 . + 0 ID=cds-WP_000122080.1;Parent=gene-AD39_RS07890;Dbxref=GenBank:WP_000122080.1;Name=WP_000122080.1;gbkey=CDS;gene=scpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311816.2;locus_tag=AD39_RS07890;product=methylmalonyl-CoA decarboxylase;protein_id=WP_000122080.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 317332 318810 . + . ID=gene-AD39_RS07885;Name=scpC;gbkey=Gene;gene=scpC;gene_biotype=protein_coding;locus_tag=AD39_RS07885;old_locus_tag=AD39_3432 NZ_JJLH01000045.1 Protein Homology CDS 317332 318810 . + 0 ID=cds-WP_000449968.1;Parent=gene-AD39_RS07885;Dbxref=GenBank:WP_000449968.1;Name=WP_000449968.1;gbkey=CDS;gene=scpC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417395.1;locus_tag=AD39_RS07885;product=propionyl-CoA:succinate CoA transferase;protein_id=WP_000449968.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 318807 319703 . - . ID=gene-AD39_RS07880;Name=srsR;gbkey=Gene;gene=srsR;gene_biotype=protein_coding;gene_synonym=ygfI;locus_tag=AD39_RS07880;old_locus_tag=AD39_3433 NZ_JJLH01000045.1 Protein Homology CDS 318807 319703 . - 0 ID=cds-WP_000350807.1;Parent=gene-AD39_RS07880;Dbxref=GenBank:WP_000350807.1;Name=WP_000350807.1;Ontology_term=GO:0003700;gbkey=CDS;gene=srsR;go_function=DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417396.4;locus_tag=AD39_RS07880;product=LysR family transcriptional regulator SrsR;protein_id=WP_000350807.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 319870 320610 . - . ID=gene-AD39_RS07875;Name=yggE;gbkey=Gene;gene=yggE;gene_biotype=protein_coding;locus_tag=AD39_RS07875;old_locus_tag=AD39_3434 NZ_JJLH01000045.1 Protein Homology CDS 319870 320610 . - 0 ID=cds-WP_000669834.1;Parent=gene-AD39_RS07875;Dbxref=GenBank:WP_000669834.1;Name=WP_000669834.1;gbkey=CDS;gene=yggE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311820.1;locus_tag=AD39_RS07875;product=oxidative stress defense protein;protein_id=WP_000669834.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 320703 321338 . - . ID=gene-AD39_RS07870;Name=argO;gbkey=Gene;gene=argO;gene_biotype=protein_coding;locus_tag=AD39_RS07870;old_locus_tag=AD39_3435 NZ_JJLH01000045.1 Protein Homology CDS 320703 321338 . - 0 ID=cds-WP_000493346.1;Parent=gene-AD39_RS07870;Dbxref=GenBank:WP_000493346.1;Name=WP_000493346.1;Ontology_term=GO:1903826,GO:0061459,GO:0016020;gbkey=CDS;gene=argO;go_component=membrane|0016020||IEA;go_function=L-arginine transmembrane transporter activity|0061459||IEA;go_process=L-arginine transmembrane transport|1903826||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311821.1;locus_tag=AD39_RS07870;product=arginine exporter ArgO;protein_id=WP_000493346.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 321477 322337 . - . ID=gene-AD39_RS07865;Name=mscS;gbkey=Gene;gene=mscS;gene_biotype=protein_coding;locus_tag=AD39_RS07865;old_locus_tag=AD39_3436 NZ_JJLH01000045.1 Protein Homology CDS 321477 322337 . - 0 ID=cds-WP_000389818.1;Parent=gene-AD39_RS07865;Dbxref=GenBank:WP_000389818.1;Name=WP_000389818.1;gbkey=CDS;gene=mscS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311822.1;locus_tag=AD39_RS07865;product=small-conductance mechanosensitive channel MscS;protein_id=WP_000389818.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 322695 323774 . - . ID=gene-AD39_RS07860;Name=fbaA;gbkey=Gene;gene=fbaA;gene_biotype=protein_coding;locus_tag=AD39_RS07860;old_locus_tag=AD39_3437 NZ_JJLH01000045.1 Protein Homology CDS 322695 323774 . - 0 ID=cds-WP_000034372.1;Parent=gene-AD39_RS07860;Dbxref=GenBank:WP_000034372.1;Name=WP_000034372.1;Ontology_term=GO:0005975,GO:0006096,GO:0004332,GO:0008270;gbkey=CDS;gene=fbaA;go_function=fructose-bisphosphate aldolase activity|0004332||IEA,zinc ion binding|0008270||IEA;go_process=carbohydrate metabolic process|0005975||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016505616.1;locus_tag=AD39_RS07860;product=class II fructose-bisphosphate aldolase;protein_id=WP_000034372.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 323989 325152 . - . ID=gene-AD39_RS07855;Name=pgk;gbkey=Gene;gene=pgk;gene_biotype=protein_coding;locus_tag=AD39_RS07855;old_locus_tag=AD39_3438 NZ_JJLH01000045.1 Protein Homology CDS 323989 325152 . - 0 ID=cds-WP_000111269.1;Parent=gene-AD39_RS07855;Dbxref=GenBank:WP_000111269.1;Name=WP_000111269.1;gbkey=CDS;gene=pgk;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005761248.1;locus_tag=AD39_RS07855;product=phosphoglycerate kinase;protein_id=WP_000111269.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 325202 326221 . - . ID=gene-AD39_RS07850;Name=epd;gbkey=Gene;gene=epd;gene_biotype=protein_coding;locus_tag=AD39_RS07850;old_locus_tag=AD39_3439 NZ_JJLH01000045.1 Protein Homology CDS 325202 326221 . - 0 ID=cds-WP_000218480.1;Parent=gene-AD39_RS07850;Dbxref=GenBank:WP_000218480.1;Name=WP_000218480.1;Ontology_term=GO:0042823,GO:0048001,GO:0051287;gbkey=CDS;gene=epd;go_function=erythrose-4-phosphate dehydrogenase activity|0048001||IEA,NAD binding|0051287||IEA;go_process=pyridoxal phosphate biosynthetic process|0042823||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311825.1;locus_tag=AD39_RS07850;product=erythrose-4-phosphate dehydrogenase;protein_id=WP_000218480.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 326593 327024 . + . ID=gene-AD39_RS07845;Name=AD39_RS07845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07845;old_locus_tag=AD39_3440 NZ_JJLH01000045.1 Protein Homology CDS 326593 327024 . + 0 ID=cds-WP_000988693.1;Parent=gene-AD39_RS07845;Dbxref=GenBank:WP_000988693.1;Name=WP_000988693.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311826.1;locus_tag=AD39_RS07845;product=PPC domain-containing DNA-binding protein;protein_id=WP_000988693.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 327047 327625 . + . ID=gene-AD39_RS07840;Name=AD39_RS07840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07840;old_locus_tag=AD39_3441 NZ_JJLH01000045.1 Protein Homology CDS 327047 327625 . + 0 ID=cds-WP_000124317.1;Parent=gene-AD39_RS07840;Dbxref=GenBank:WP_000124317.1;Name=WP_000124317.1;Ontology_term=GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311827.1;locus_tag=AD39_RS07840;product=ECF transporter S component;protein_id=WP_000124317.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 327626 328333 . + . ID=gene-AD39_RS07835;Name=AD39_RS07835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07835;old_locus_tag=AD39_3442 NZ_JJLH01000045.1 Protein Homology CDS 327626 328333 . + 0 ID=cds-WP_000553215.1;Parent=gene-AD39_RS07835;Dbxref=GenBank:WP_000553215.1;Name=WP_000553215.1;Ontology_term=GO:0055085;gbkey=CDS;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311828.1;locus_tag=AD39_RS07835;product=energy-coupling factor transporter transmembrane component T;protein_id=WP_000553215.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 328321 328998 . + . ID=gene-AD39_RS07830;Name=AD39_RS07830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07830;old_locus_tag=AD39_3443 NZ_JJLH01000045.1 Protein Homology CDS 328321 328998 . + 0 ID=cds-WP_000256969.1;Parent=gene-AD39_RS07830;Dbxref=GenBank:WP_000256969.1;Name=WP_000256969.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311829.1;locus_tag=AD39_RS07830;product=ABC transporter ATP-binding protein;protein_id=WP_000256969.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 328992 329669 . + . ID=gene-AD39_RS07825;Name=AD39_RS07825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07825;old_locus_tag=AD39_3444 NZ_JJLH01000045.1 Protein Homology CDS 328992 329669 . + 0 ID=cds-WP_000956869.1;Parent=gene-AD39_RS07825;Dbxref=GenBank:WP_000956869.1;Name=WP_000956869.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708691.2;locus_tag=AD39_RS07825;product=ABC transporter ATP-binding protein;protein_id=WP_000956869.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 329641 330354 . - . ID=gene-AD39_RS07820;Name=AD39_RS07820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07820;old_locus_tag=AD39_3445 NZ_JJLH01000045.1 Protein Homology CDS 329641 330354 . - 0 ID=cds-WP_000687704.1;Parent=gene-AD39_RS07820;Dbxref=GenBank:WP_000687704.1;Name=WP_000687704.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708692.1;locus_tag=AD39_RS07820;product=nucleoside/nucleotide kinase family protein;protein_id=WP_000687704.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 330351 330860 . - . ID=gene-AD39_RS07815;Name=fumE;gbkey=Gene;gene=fumE;gene_biotype=protein_coding;locus_tag=AD39_RS07815;old_locus_tag=AD39_3446 NZ_JJLH01000045.1 Protein Homology CDS 330351 330860 . - 0 ID=cds-WP_000224130.1;Parent=gene-AD39_RS07815;Dbxref=GenBank:WP_000224130.1;Name=WP_000224130.1;gbkey=CDS;gene=fumE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708693.1;locus_tag=AD39_RS07815;product=fumarase E;protein_id=WP_000224130.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 330882 331847 . - . ID=gene-AD39_RS07810;Name=glpX;gbkey=Gene;gene=glpX;gene_biotype=protein_coding;locus_tag=AD39_RS07810;old_locus_tag=AD39_3447 NZ_JJLH01000045.1 Protein Homology CDS 330882 331847 . - 0 ID=cds-WP_000987305.1;Parent=gene-AD39_RS07810;Dbxref=GenBank:WP_000987305.1;Name=WP_000987305.1;Ontology_term=GO:0006071,GO:0006094,GO:0042132;gbkey=CDS;gene=glpX;go_function=fructose 1%2C6-bisphosphate 1-phosphatase activity|0042132||IEA;go_process=glycerol metabolic process|0006071||IEA,gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417405.1;locus_tag=AD39_RS07810;product=class II fructose-bisphosphatase;protein_id=WP_000987305.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 331844 333121 . - . ID=gene-AD39_RS07805;Name=yggP;gbkey=Gene;gene=yggP;gene_biotype=protein_coding;locus_tag=AD39_RS07805;old_locus_tag=AD39_3448 NZ_JJLH01000045.1 Protein Homology CDS 331844 333121 . - 0 ID=cds-WP_000853221.1;Parent=gene-AD39_RS07805;Dbxref=GenBank:WP_000853221.1;Name=WP_000853221.1;gbkey=CDS;gene=yggP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311834.1;locus_tag=AD39_RS07805;product=zinc-binding dehydrogenase;protein_id=WP_000853221.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 333136 334524 . - . ID=gene-AD39_RS07800;Name=cmtA;gbkey=Gene;gene=cmtA;gene_biotype=protein_coding;locus_tag=AD39_RS07800;old_locus_tag=AD39_3449 NZ_JJLH01000045.1 Protein Homology CDS 333136 334524 . - 0 ID=cds-WP_000428805.1;Parent=gene-AD39_RS07800;Dbxref=GenBank:WP_000428805.1;Name=WP_000428805.1;gbkey=CDS;gene=cmtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311835.1;locus_tag=AD39_RS07800;product=PTS mannitol transporter subunit IICB;protein_id=WP_000428805.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 334552 334995 . - . ID=gene-AD39_RS07795;Name=cmtB;gbkey=Gene;gene=cmtB;gene_biotype=protein_coding;locus_tag=AD39_RS07795;old_locus_tag=AD39_3450 NZ_JJLH01000045.1 Protein Homology CDS 334552 334995 . - 0 ID=cds-WP_001239643.1;Parent=gene-AD39_RS07795;Dbxref=GenBank:WP_001239643.1;Name=WP_001239643.1;gbkey=CDS;gene=cmtB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311836.1;locus_tag=AD39_RS07795;product=PTS mannitol transporter subunit IIA;protein_id=WP_001239643.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 335309 337300 . - . ID=gene-AD39_RS07790;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=AD39_RS07790;old_locus_tag=AD39_3452 NZ_JJLH01000045.1 Protein Homology CDS 335309 337300 . - 0 ID=cds-WP_000098614.1;Parent=gene-AD39_RS07790;Dbxref=GenBank:WP_000098614.1;Name=WP_000098614.1;Ontology_term=GO:0004802;gbkey=CDS;gene=tkt;go_function=transketolase activity|0004802||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026188.1;locus_tag=AD39_RS07790;product=transketolase;protein_id=WP_000098614.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 337578 338336 . + . ID=gene-AD39_RS07785;Name=loiP;gbkey=Gene;gene=loiP;gene_biotype=protein_coding;gene_synonym=yggG;locus_tag=AD39_RS07785;old_locus_tag=AD39_3453 NZ_JJLH01000045.1 Protein Homology CDS 337578 338336 . + 0 ID=cds-WP_032181322.1;Parent=gene-AD39_RS07785;Dbxref=GenBank:WP_032181322.1;Name=WP_032181322.1;gbkey=CDS;gene=loiP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311838.2;locus_tag=AD39_RS07785;product=metalloprotease LoiP;protein_id=WP_032181322.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 338542 339462 . - . ID=gene-AD39_RS07780;Name=speB;gbkey=Gene;gene=speB;gene_biotype=protein_coding;locus_tag=AD39_RS07780;old_locus_tag=AD39_3454 NZ_JJLH01000045.1 Protein Homology CDS 338542 339462 . - 0 ID=cds-WP_000105566.1;Parent=gene-AD39_RS07780;Dbxref=GenBank:WP_000105566.1;Name=WP_000105566.1;Ontology_term=GO:0008295,GO:0008783;gbkey=CDS;gene=speB;go_function=agmatinase activity|0008783||IEA;go_process=spermidine biosynthetic process|0008295||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311839.1;locus_tag=AD39_RS07780;product=agmatinase;protein_id=WP_000105566.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 339598 340329 . - . ID=gene-AD39_RS07775;Name=AD39_RS07775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07775;old_locus_tag=AD39_3455 NZ_JJLH01000045.1 Protein Homology CDS 339598 340329 . - 0 ID=cds-WP_000758915.1;Parent=gene-AD39_RS07775;Dbxref=GenBank:WP_000758915.1;Name=WP_000758915.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311840.1;locus_tag=AD39_RS07775;product=hypothetical protein;protein_id=WP_000758915.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 340475 342451 . - . ID=gene-AD39_RS07770;Name=speA;gbkey=Gene;gene=speA;gene_biotype=protein_coding;locus_tag=AD39_RS07770;old_locus_tag=AD39_3456 NZ_JJLH01000045.1 Protein Homology CDS 340475 342451 . - 0 ID=cds-WP_001295380.1;Parent=gene-AD39_RS07770;Dbxref=GenBank:WP_001295380.1;Name=WP_001295380.1;Ontology_term=GO:0006527,GO:0008792;gbkey=CDS;gene=speA;go_function=arginine decarboxylase activity|0008792||IEA;go_process=arginine catabolic process|0006527||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311841.1;locus_tag=AD39_RS07770;product=biosynthetic arginine decarboxylase;protein_id=WP_001295380.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 342460 342591 . - . ID=gene-AD39_RS07765;Name=yqgB;gbkey=Gene;gene=yqgB;gene_biotype=protein_coding;locus_tag=AD39_RS07765;old_locus_tag=AD39_3457 NZ_JJLH01000045.1 Protein Homology CDS 342460 342591 . - 0 ID=cds-WP_001297406.1;Parent=gene-AD39_RS07765;Dbxref=GenBank:WP_001297406.1;Name=WP_001297406.1;gbkey=CDS;gene=yqgB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417414.2;locus_tag=AD39_RS07765;product=acid stress response protein YqgB;protein_id=WP_001297406.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 342685 342828 . - . ID=gene-AD39_RS29990;Name=yqgG;gbkey=Gene;gene=yqgG;gene_biotype=protein_coding;locus_tag=AD39_RS29990 NZ_JJLH01000045.1 Protein Homology CDS 342685 342828 . - 0 ID=cds-WP_001297404.1;Parent=gene-AD39_RS29990;Dbxref=GenBank:WP_001297404.1;Name=WP_001297404.1;gbkey=CDS;gene=yqgG;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051195.1;locus_tag=AD39_RS29990;product=protein YqgG;protein_id=WP_001297404.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 342939 343190 . - . ID=gene-AD39_RS29995;Name=yqgD;gbkey=Gene;gene=yqgD;gene_biotype=protein_coding;locus_tag=AD39_RS29995 NZ_JJLH01000045.1 Protein Homology CDS 342939 343190 . - 0 ID=cds-WP_001303651.1;Parent=gene-AD39_RS29995;Dbxref=GenBank:WP_001303651.1;Name=WP_001303651.1;gbkey=CDS;gene=yqgD;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518814.1;locus_tag=AD39_RS29995;product=protein YqgD;protein_id=WP_001303651.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 343246 344400 . + . ID=gene-AD39_RS07760;Name=metK;gbkey=Gene;gene=metK;gene_biotype=protein_coding;locus_tag=AD39_RS07760;old_locus_tag=AD39_3459 NZ_JJLH01000045.1 Protein Homology CDS 343246 344400 . + 0 ID=cds-WP_001062128.1;Parent=gene-AD39_RS07760;Dbxref=GenBank:WP_001062128.1;Name=WP_001062128.1;Ontology_term=GO:0006556,GO:0004478,GO:0005524;gbkey=CDS;gene=metK;go_function=methionine adenosyltransferase activity|0004478||IEA,ATP binding|0005524||IEA;go_process=S-adenosylmethionine biosynthetic process|0006556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123306.1;locus_tag=AD39_RS07760;product=methionine adenosyltransferase;protein_id=WP_001062128.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 344836 346230 . + . ID=gene-AD39_RS07755;Name=galP;gbkey=Gene;gene=galP;gene_biotype=protein_coding;locus_tag=AD39_RS07755;old_locus_tag=AD39_3460 NZ_JJLH01000045.1 Protein Homology CDS 344836 346230 . + 0 ID=cds-WP_001112301.1;Parent=gene-AD39_RS07755;Dbxref=GenBank:WP_001112301.1;Name=WP_001112301.1;gbkey=CDS;gene=galP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417418.1;locus_tag=AD39_RS07755;product=galactose/proton symporter;protein_id=WP_001112301.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 346307 346804 . + . ID=gene-AD39_RS07750;Name=yggI;gbkey=Gene;gene=yggI;gene_biotype=protein_coding;locus_tag=AD39_RS07750;old_locus_tag=AD39_3461 NZ_JJLH01000045.1 Protein Homology CDS 346307 346804 . + 0 ID=cds-WP_000858396.1;Parent=gene-AD39_RS07750;Dbxref=GenBank:WP_000858396.1;Name=WP_000858396.1;gbkey=CDS;gene=yggI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417419.1;locus_tag=AD39_RS07750;product=SprT family zinc-dependent metalloprotease;protein_id=WP_000858396.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 346899 347606 . + . ID=gene-AD39_RS07745;Name=endA;gbkey=Gene;gene=endA;gene_biotype=protein_coding;locus_tag=AD39_RS07745;old_locus_tag=AD39_3462 NZ_JJLH01000045.1 Protein Homology CDS 346899 347606 . + 0 ID=cds-WP_000286500.1;Parent=gene-AD39_RS07745;Dbxref=GenBank:WP_000286500.1;Name=WP_000286500.1;Ontology_term=GO:0004518;gbkey=CDS;gene=endA;go_function=nuclease activity|0004518||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417420.1;locus_tag=AD39_RS07745;product=deoxyribonuclease I;protein_id=WP_000286500.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 347686 348417 . + . ID=gene-AD39_RS07740;Name=rsmE;gbkey=Gene;gene=rsmE;gene_biotype=protein_coding;locus_tag=AD39_RS07740;old_locus_tag=AD39_3463 NZ_JJLH01000045.1 Protein Homology CDS 347686 348417 . + 0 ID=cds-WP_001222508.1;Parent=gene-AD39_RS07740;Dbxref=GenBank:WP_001222508.1;Name=WP_001222508.1;Ontology_term=GO:0006364,GO:0008168;gbkey=CDS;gene=rsmE;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311849.2;locus_tag=AD39_RS07740;product=16S rRNA (uracil(1498)-N(3))-methyltransferase;protein_id=WP_001222508.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 348430 349380 . + . ID=gene-AD39_RS07735;Name=gshB;gbkey=Gene;gene=gshB;gene_biotype=protein_coding;locus_tag=AD39_RS07735;old_locus_tag=AD39_3464 NZ_JJLH01000045.1 Protein Homology CDS 348430 349380 . + 0 ID=cds-WP_001413862.1;Parent=gene-AD39_RS07735;Dbxref=GenBank:WP_001413862.1;Name=WP_001413862.1;Ontology_term=GO:0006750,GO:0004363,GO:0005524,GO:0046872;gbkey=CDS;gene=gshB;go_function=glutathione synthase activity|0004363||IEA,ATP binding|0005524||IEA,metal ion binding|0046872||IEA;go_process=glutathione biosynthetic process|0006750||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417422.1;locus_tag=AD39_RS07735;product=glutathione synthase;protein_id=WP_001413862.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 349489 350052 . + . ID=gene-AD39_RS07730;Name=yqgE;gbkey=Gene;gene=yqgE;gene_biotype=protein_coding;locus_tag=AD39_RS07730;old_locus_tag=AD39_3465 NZ_JJLH01000045.1 Protein Homology CDS 349489 350052 . + 0 ID=cds-WP_001053178.1;Parent=gene-AD39_RS07730;Dbxref=GenBank:WP_001053178.1;Name=WP_001053178.1;gbkey=CDS;gene=yqgE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417423.4;locus_tag=AD39_RS07730;product=YqgE/AlgH family protein;protein_id=WP_001053178.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 350052 350468 . + . ID=gene-AD39_RS07725;Name=ruvX;gbkey=Gene;gene=ruvX;gene_biotype=protein_coding;locus_tag=AD39_RS07725;old_locus_tag=AD39_3466 NZ_JJLH01000045.1 Protein Homology CDS 350052 350468 . + 0 ID=cds-WP_000017111.1;Parent=gene-AD39_RS07725;Dbxref=GenBank:WP_000017111.1;Name=WP_000017111.1;Ontology_term=GO:0006364;gbkey=CDS;gene=ruvX;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708714.1;locus_tag=AD39_RS07725;product=Holliday junction resolvase RuvX;protein_id=WP_000017111.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 350644 351624 . - . ID=gene-AD39_RS07720;Name=yggR;gbkey=Gene;gene=yggR;gene_biotype=protein_coding;locus_tag=AD39_RS07720;old_locus_tag=AD39_3467 NZ_JJLH01000045.1 Protein Homology CDS 350644 351624 . - 0 ID=cds-WP_001055620.1;Parent=gene-AD39_RS07720;Dbxref=GenBank:WP_001055620.1;Name=WP_001055620.1;Ontology_term=GO:0043107,GO:0005524;gbkey=CDS;gene=yggR;go_function=ATP binding|0005524||IEA;go_process=type IV pilus-dependent motility|0043107||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417425.2;locus_tag=AD39_RS07720;product=PilT/PilU family type 4a pilus ATPase;protein_id=WP_001055620.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 351642 352346 . + . ID=gene-AD39_RS07715;Name=yggS;gbkey=Gene;gene=yggS;gene_biotype=protein_coding;locus_tag=AD39_RS07715;old_locus_tag=AD39_3468 NZ_JJLH01000045.1 Protein Homology CDS 351642 352346 . + 0 ID=cds-WP_000997795.1;Parent=gene-AD39_RS07715;Dbxref=GenBank:WP_000997795.1;Name=WP_000997795.1;gbkey=CDS;gene=yggS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417426.1;locus_tag=AD39_RS07715;product=pyridoxal phosphate homeostasis protein;protein_id=WP_000997795.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 352364 352930 . + . ID=gene-AD39_RS07710;Name=yggT;gbkey=Gene;gene=yggT;gene_biotype=protein_coding;locus_tag=AD39_RS07710;old_locus_tag=AD39_3469 NZ_JJLH01000045.1 Protein Homology CDS 352364 352930 . + 0 ID=cds-WP_001094831.1;Parent=gene-AD39_RS07710;Dbxref=GenBank:WP_001094831.1;Name=WP_001094831.1;gbkey=CDS;gene=yggT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311855.1;locus_tag=AD39_RS07710;product=osmotic shock tolerance protein YggT;protein_id=WP_001094831.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 352927 353217 . + . ID=gene-AD39_RS07705;Name=yggU;gbkey=Gene;gene=yggU;gene_biotype=protein_coding;locus_tag=AD39_RS07705;old_locus_tag=AD39_3470 NZ_JJLH01000045.1 Protein Homology CDS 352927 353217 . + 0 ID=cds-WP_001277222.1;Parent=gene-AD39_RS07705;Dbxref=GenBank:WP_001277222.1;Name=WP_001277222.1;gbkey=CDS;gene=yggU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417428.2;locus_tag=AD39_RS07705;product=DUF167 family protein YggU;protein_id=WP_001277222.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 353225 353818 . + . ID=gene-AD39_RS07700;Name=rdgB;gbkey=Gene;gene=rdgB;gene_biotype=protein_coding;locus_tag=AD39_RS07700;old_locus_tag=AD39_3471 NZ_JJLH01000045.1 Protein Homology CDS 353225 353818 . + 0 ID=cds-WP_001174745.1;Parent=gene-AD39_RS07700;Dbxref=GenBank:WP_001174745.1;Name=WP_001174745.1;Ontology_term=GO:0009143,GO:0047429;gbkey=CDS;gene=rdgB;go_function=nucleoside triphosphate diphosphatase activity|0047429||IEA;go_process=nucleoside triphosphate catabolic process|0009143||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311857.1;locus_tag=AD39_RS07700;product=RdgB/HAM1 family non-canonical purine NTP pyrophosphatase;protein_id=WP_001174745.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 353811 354947 . + . ID=gene-AD39_RS07695;Name=hemW;gbkey=Gene;gene=hemW;gene_biotype=protein_coding;locus_tag=AD39_RS07695;old_locus_tag=AD39_3472 NZ_JJLH01000045.1 Protein Homology CDS 353811 354947 . + 0 ID=cds-WP_000239922.1;Parent=gene-AD39_RS07695;Dbxref=GenBank:WP_000239922.1;Name=WP_000239922.1;Ontology_term=GO:0006779,GO:0051539,GO:0051989,GO:0005737;gbkey=CDS;gene=hemW;go_component=cytoplasm|0005737||IEA;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,coproporphyrinogen dehydrogenase activity|0051989||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708720.1;locus_tag=AD39_RS07695;product=radical SAM family heme chaperone HemW;protein_id=WP_000239922.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 355264 356250 . + . ID=gene-AD39_RS07690;Name=AD39_RS07690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07690;old_locus_tag=AD39_3473 NZ_JJLH01000045.1 Protein Homology CDS 355264 356250 . + 0 ID=cds-WP_000784004.1;Parent=gene-AD39_RS07690;Dbxref=GenBank:WP_000784004.1;Name=WP_000784004.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016231167.1;locus_tag=AD39_RS07690;product=TRAP transporter substrate-binding protein;protein_id=WP_000784004.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 356295 356798 . + . ID=gene-AD39_RS07685;Name=AD39_RS07685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07685;old_locus_tag=AD39_3474 NZ_JJLH01000045.1 Protein Homology CDS 356295 356798 . + 0 ID=cds-WP_000577033.1;Parent=gene-AD39_RS07685;Dbxref=GenBank:WP_000577033.1;Name=WP_000577033.1;Ontology_term=GO:0015740,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=C4-dicarboxylate transport|0015740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708723.2;locus_tag=AD39_RS07685;product=TRAP transporter small permease;protein_id=WP_000577033.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 356798 358099 . + . ID=gene-AD39_RS07680;Name=AD39_RS07680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07680;old_locus_tag=AD39_3475 NZ_JJLH01000045.1 Protein Homology CDS 356798 358099 . + 0 ID=cds-WP_000378946.1;Parent=gene-AD39_RS07680;Dbxref=GenBank:WP_000378946.1;Name=WP_000378946.1;Ontology_term=GO:0008643,GO:0022857,GO:0005886,GO:0016020,GO:0031317;gbkey=CDS;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA,tripartite ATP-independent periplasmic transporter complex|0031317||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708726.2;locus_tag=AD39_RS07680;product=TRAP transporter large permease;protein_id=WP_000378946.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 358155 359162 . - . ID=gene-AD39_RS07675;Name=yggM;gbkey=Gene;gene=yggM;gene_biotype=protein_coding;locus_tag=AD39_RS07675;old_locus_tag=AD39_3476 NZ_JJLH01000045.1 Protein Homology CDS 358155 359162 . - 0 ID=cds-WP_000745217.1;Parent=gene-AD39_RS07675;Dbxref=GenBank:WP_000745217.1;Name=WP_000745217.1;gbkey=CDS;gene=yggM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417431.1;locus_tag=AD39_RS07675;product=DUF1202 family protein;protein_id=WP_000745217.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 359279 360325 . - . ID=gene-AD39_RS07670;Name=ansB;gbkey=Gene;gene=ansB;gene_biotype=protein_coding;locus_tag=AD39_RS07670;old_locus_tag=AD39_3477 NZ_JJLH01000045.1 Protein Homology CDS 359279 360325 . - 0 ID=cds-WP_000394125.1;Parent=gene-AD39_RS07670;Dbxref=GenBank:WP_000394125.1;Name=WP_000394125.1;Ontology_term=GO:0006528,GO:0004067;gbkey=CDS;gene=ansB;go_function=asparaginase activity|0004067||IEA;go_process=asparagine metabolic process|0006528||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708728.1;locus_tag=AD39_RS07670;product=L-asparaginase 2;protein_id=WP_000394125.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 360501 361220 . - . ID=gene-AD39_RS07665;Name=yggN;gbkey=Gene;gene=yggN;gene_biotype=protein_coding;locus_tag=AD39_RS07665;old_locus_tag=AD39_3478 NZ_JJLH01000045.1 Protein Homology CDS 360501 361220 . - 0 ID=cds-WP_000984796.1;Parent=gene-AD39_RS07665;Dbxref=GenBank:WP_000984796.1;Name=WP_000984796.1;gbkey=CDS;gene=yggN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311861.1;locus_tag=AD39_RS07665;product=DUF2884 domain-containing protein;protein_id=WP_000984796.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 361404 361730 . - . ID=gene-AD39_RS07655;Name=yggL;gbkey=Gene;gene=yggL;gene_biotype=protein_coding;locus_tag=AD39_RS07655;old_locus_tag=AD39_3480 NZ_JJLH01000045.1 Protein Homology CDS 361404 361730 . - 0 ID=cds-WP_001107564.1;Parent=gene-AD39_RS07655;Dbxref=GenBank:WP_001107564.1;Name=WP_001107564.1;gbkey=CDS;gene=yggL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417434.4;locus_tag=AD39_RS07655;product=YggL family protein;protein_id=WP_001107564.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 361730 362449 . - . ID=gene-AD39_RS07650;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;locus_tag=AD39_RS07650;old_locus_tag=AD39_3481 NZ_JJLH01000045.1 Protein Homology CDS 361730 362449 . - 0 ID=cds-WP_000786911.1;Parent=gene-AD39_RS07650;Dbxref=GenBank:WP_000786911.1;Name=WP_000786911.1;Ontology_term=GO:0006400,GO:0008176;gbkey=CDS;gene=trmB;go_function=tRNA (guanine(46)-N7)-methyltransferase activity|0008176||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417435.1;locus_tag=AD39_RS07650;product=tRNA (guanosine(46)-N7)-methyltransferase TrmB;protein_id=WP_000786911.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 362610 363662 . + . ID=gene-AD39_RS07645;Name=mutY;gbkey=Gene;gene=mutY;gene_biotype=protein_coding;locus_tag=AD39_RS07645;old_locus_tag=AD39_3482 NZ_JJLH01000045.1 Protein Homology CDS 362610 363662 . + 0 ID=cds-WP_001297399.1;Parent=gene-AD39_RS07645;Dbxref=GenBank:WP_001297399.1;Name=WP_001297399.1;Ontology_term=GO:0006281,GO:0019104;gbkey=CDS;gene=mutY;go_function=DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311864.1;locus_tag=AD39_RS07645;product=A/G-specific adenine glycosylase;protein_id=WP_001297399.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 363690 363965 . + . ID=gene-AD39_RS07640;Name=yggX;gbkey=Gene;gene=yggX;gene_biotype=protein_coding;locus_tag=AD39_RS07640;old_locus_tag=AD39_3483 NZ_JJLH01000045.1 Protein Homology CDS 363690 363965 . + 0 ID=cds-WP_000091700.1;Parent=gene-AD39_RS07640;Dbxref=GenBank:WP_000091700.1;Name=WP_000091700.1;Ontology_term=GO:0005506;gbkey=CDS;gene=yggX;go_function=iron ion binding|0005506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311865.1;locus_tag=AD39_RS07640;product=oxidative damage protection protein;protein_id=WP_000091700.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 364030 365109 . + . ID=gene-AD39_RS07635;Name=mltC;gbkey=Gene;gene=mltC;gene_biotype=protein_coding;locus_tag=AD39_RS07635;old_locus_tag=AD39_3484 NZ_JJLH01000045.1 Protein Homology CDS 364030 365109 . + 0 ID=cds-WP_001383966.1;Parent=gene-AD39_RS07635;Dbxref=GenBank:WP_001383966.1;Name=WP_001383966.1;Ontology_term=GO:0000270,GO:0008933,GO:0016020;gbkey=CDS;gene=mltC;go_component=membrane|0016020||IEA;go_function=peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417438.2;locus_tag=AD39_RS07635;product=membrane-bound lytic murein transglycosylase MltC;protein_id=WP_001383966.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 365311 366567 . + . ID=gene-AD39_RS07630;Name=nupG;gbkey=Gene;gene=nupG;gene_biotype=protein_coding;locus_tag=AD39_RS07630;old_locus_tag=AD39_3485 NZ_JJLH01000045.1 Protein Homology CDS 365311 366567 . + 0 ID=cds-WP_001049791.1;Parent=gene-AD39_RS07630;Dbxref=GenBank:WP_001049791.1;Name=WP_001049791.1;gbkey=CDS;gene=nupG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311867.2;locus_tag=AD39_RS07630;product=nucleoside permease NupG;protein_id=WP_001049791.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 366617 368752 . - . ID=gene-AD39_RS07625;Name=speC;gbkey=Gene;gene=speC;gene_biotype=protein_coding;locus_tag=AD39_RS07625;old_locus_tag=AD39_3486 NZ_JJLH01000045.1 Protein Homology CDS 366617 368752 . - 0 ID=cds-WP_032254552.1;Parent=gene-AD39_RS07625;Dbxref=GenBank:WP_032254552.1;Name=WP_032254552.1;gbkey=CDS;gene=speC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311868.2;locus_tag=AD39_RS07625;product=ornithine decarboxylase;protein_id=WP_032254552.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 368914 368997 . - . ID=gene-AD39_RS29810;Name=yqgH;gbkey=Gene;gene=yqgH;gene_biotype=protein_coding;locus_tag=AD39_RS29810 NZ_JJLH01000045.1 Protein Homology CDS 368914 368997 . - 0 ID=cds-WP_212734346.1;Parent=gene-AD39_RS29810;Dbxref=GenBank:WP_212734346.1;Name=WP_212734346.1;gbkey=CDS;gene=yqgH;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051196.1;locus_tag=AD39_RS29810;product=hypothetical protein;protein_id=WP_212734346.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 369150 369857 . + . ID=gene-AD39_RS07620;Name=yqgA;gbkey=Gene;gene=yqgA;gene_biotype=protein_coding;locus_tag=AD39_RS07620;old_locus_tag=AD39_3487 NZ_JJLH01000045.1 Protein Homology CDS 369150 369857 . + 0 ID=cds-WP_000234514.1;Parent=gene-AD39_RS07620;Dbxref=GenBank:WP_000234514.1;Name=WP_000234514.1;gbkey=CDS;gene=yqgA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417441.1;locus_tag=AD39_RS07620;product=DUF554 domain-containing protein;protein_id=WP_000234514.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 369963 370038 . + . ID=gene-AD39_RS07615;Name=AD39_RS07615;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS07615;old_locus_tag=AD39_3488 NZ_JJLH01000045.1 tRNAscan-SE tRNA 369963 370038 . + . ID=rna-AD39_RS07615;Parent=gene-AD39_RS07615;anticodon=(pos:369996..369998);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS07615;product=tRNA-Phe NZ_JJLH01000045.1 tRNAscan-SE exon 369963 370038 . + . ID=exon-AD39_RS07615-1;Parent=rna-AD39_RS07615;anticodon=(pos:369996..369998);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS07615;product=tRNA-Phe NZ_JJLH01000045.1 RefSeq gene 370187 370723 . - . ID=gene-AD39_RS07610;Name=yghD;gbkey=Gene;gene=yghD;gene_biotype=protein_coding;locus_tag=AD39_RS07610;old_locus_tag=AD39_3489 NZ_JJLH01000045.1 Protein Homology CDS 370187 370723 . - 0 ID=cds-WP_001681444.1;Parent=gene-AD39_RS07610;Dbxref=GenBank:WP_001681444.1;Name=WP_001681444.1;gbkey=CDS;gene=yghD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417442.1;locus_tag=AD39_RS07610;product=GspM family type II secretion system protein YghD;protein_id=WP_001681444.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 370725 371903 . - . ID=gene-AD39_RS07605;Name=gspL;gbkey=Gene;gene=gspL;gene_biotype=protein_coding;locus_tag=AD39_RS07605;old_locus_tag=AD39_3490 NZ_JJLH01000045.1 Protein Homology CDS 370725 371903 . - 0 ID=cds-WP_032283517.1;Parent=gene-AD39_RS07605;Dbxref=GenBank:WP_032283517.1;Name=WP_032283517.1;Ontology_term=GO:0015628,GO:0009276,GO:0015627;gbkey=CDS;gene=gspL;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA,type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000097227.1;locus_tag=AD39_RS07605;product=type II secretion system protein GspL;protein_id=WP_032283517.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 371900 372877 . - . ID=gene-AD39_RS07600;Name=gspK;gbkey=Gene;gene=gspK;gene_biotype=protein_coding;locus_tag=AD39_RS07600;old_locus_tag=AD39_3491 NZ_JJLH01000045.1 Protein Homology CDS 371900 372877 . - 0 ID=cds-WP_032241241.1;Parent=gene-AD39_RS07600;Dbxref=GenBank:WP_032241241.1;Name=WP_032241241.1;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;gene=gspK;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001554494.1;locus_tag=AD39_RS07600;product=type II secretion system minor pseudopilin GspK;protein_id=WP_032241241.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 372880 373479 . - . ID=gene-AD39_RS07595;Name=gspJ;gbkey=Gene;gene=gspJ;gene_biotype=protein_coding;locus_tag=AD39_RS07595;old_locus_tag=AD39_3492 NZ_JJLH01000045.1 Protein Homology CDS 372880 373479 . - 0 ID=cds-WP_001255039.1;Parent=gene-AD39_RS07595;Dbxref=GenBank:WP_001255039.1;Name=WP_001255039.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspJ;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001691118.1;locus_tag=AD39_RS07595;product=type II secretion system minor pseudopilin GspJ;protein_id=WP_001255039.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 373476 373847 . - . ID=gene-AD39_RS07590;Name=gspI;gbkey=Gene;gene=gspI;gene_biotype=protein_coding;locus_tag=AD39_RS07590;old_locus_tag=AD39_3493 NZ_JJLH01000045.1 Protein Homology CDS 373476 373847 . - 0 ID=cds-WP_032287615.1;Parent=gene-AD39_RS07590;Dbxref=GenBank:WP_032287615.1;Name=WP_032287615.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspI;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001709020.1;locus_tag=AD39_RS07590;product=type II secretion system minor pseudopilin GspI;protein_id=WP_032287615.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 373844 374407 . - . ID=gene-AD39_RS07585;Name=gspH;gbkey=Gene;gene=gspH;gene_biotype=protein_coding;locus_tag=AD39_RS07585;old_locus_tag=AD39_3494 NZ_JJLH01000045.1 Protein Homology CDS 373844 374407 . - 0 ID=cds-WP_024203349.1;Parent=gene-AD39_RS07585;Dbxref=GenBank:WP_024203349.1;Name=WP_024203349.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspH;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001394829.1;locus_tag=AD39_RS07585;product=type II secretion system minor pseudopilin GspH;protein_id=WP_024203349.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 374411 374866 . - . ID=gene-AD39_RS07580;Name=gspG;gbkey=Gene;gene=gspG;gene_biotype=protein_coding;locus_tag=AD39_RS07580;old_locus_tag=AD39_3495 NZ_JJLH01000045.1 Protein Homology CDS 374411 374866 . - 0 ID=cds-WP_001087296.1;Parent=gene-AD39_RS07580;Dbxref=GenBank:WP_001087296.1;Name=WP_001087296.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspG;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003912123.1;locus_tag=AD39_RS07580;product=type II secretion system major pseudopilin GspG;protein_id=WP_001087296.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 374883 376106 . - . ID=gene-AD39_RS07575;Name=gspF;gbkey=Gene;gene=gspF;gene_biotype=protein_coding;locus_tag=AD39_RS07575;old_locus_tag=AD39_3496 NZ_JJLH01000045.1 Protein Homology CDS 374883 376106 . - 0 ID=cds-WP_032283520.1;Parent=gene-AD39_RS07575;Dbxref=GenBank:WP_032283520.1;Name=WP_032283520.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspF;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001173399.1;locus_tag=AD39_RS07575;product=type II secretion system inner membrane protein GspF;protein_id=WP_032283520.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 376106 377599 . - . ID=gene-AD39_RS07570;Name=gspE;gbkey=Gene;gene=gspE;gene_biotype=protein_coding;locus_tag=AD39_RS07570;old_locus_tag=AD39_3497 NZ_JJLH01000045.1 Protein Homology CDS 376106 377599 . - 0 ID=cds-WP_032283522.1;Parent=gene-AD39_RS07570;Dbxref=GenBank:WP_032283522.1;Name=WP_032283522.1;Ontology_term=GO:0015628,GO:0005524,GO:0015627;gbkey=CDS;gene=gspE;go_component=type II protein secretion system complex|0015627||IEA;go_function=ATP binding|0005524||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001525635.1;locus_tag=AD39_RS07570;product=type II secretion system ATPase GspE;protein_id=WP_032283522.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 377599 379659 . - . ID=gene-AD39_RS07565;Name=gspD;gbkey=Gene;gene=gspD;gene_biotype=protein_coding;locus_tag=AD39_RS07565;old_locus_tag=AD39_3498 NZ_JJLH01000045.1 Protein Homology CDS 377599 379659 . - 0 ID=cds-WP_000498829.1;Parent=gene-AD39_RS07565;Dbxref=GenBank:WP_000498829.1;Name=WP_000498829.1;Ontology_term=GO:0015628,GO:0015627,GO:0019867;gbkey=CDS;gene=gspD;go_component=type II protein secretion system complex|0015627||IEA,outer membrane|0019867||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020234996.1;locus_tag=AD39_RS07565;product=type II secretion system secretin GspD;protein_id=WP_000498829.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 379689 380648 . - . ID=gene-AD39_RS07560;Name=gspC;gbkey=Gene;gene=gspC;gene_biotype=protein_coding;locus_tag=AD39_RS07560;old_locus_tag=AD39_3499 NZ_JJLH01000045.1 Protein Homology CDS 379689 380648 . - 0 ID=cds-WP_000135063.1;Parent=gene-AD39_RS07560;Dbxref=GenBank:WP_000135063.1;Name=WP_000135063.1;gbkey=CDS;gene=gspC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020239656.1;locus_tag=AD39_RS07560;product=type II secretion system protein GspC;protein_id=WP_000135063.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 380666 381076 . - . ID=gene-AD39_RS07555;Name=gspS2;gbkey=Gene;gene=gspS2;gene_biotype=protein_coding;locus_tag=AD39_RS07555;old_locus_tag=AD39_3500 NZ_JJLH01000045.1 Protein Homology CDS 380666 381076 . - 0 ID=cds-WP_001324279.1;Parent=gene-AD39_RS07555;Dbxref=GenBank:WP_001324279.1;Name=WP_001324279.1;gbkey=CDS;gene=gspS2;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417445.1;locus_tag=AD39_RS07555;product=type II secretion system pilot lipoprotein GspS-beta;protein_id=WP_001324279.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 381142 381951 . - . ID=gene-AD39_RS07550;Name=pppA;gbkey=Gene;gene=pppA;gene_biotype=protein_coding;locus_tag=AD39_RS07550;old_locus_tag=AD39_3501 NZ_JJLH01000045.1 Protein Homology CDS 381142 381951 . - 0 ID=cds-WP_001331203.1;Parent=gene-AD39_RS07550;Dbxref=GenBank:WP_001331203.1;Name=WP_001331203.1;gbkey=CDS;gene=pppA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417446.4;locus_tag=AD39_RS07550;product=prepilin peptidase PppA;protein_id=WP_001331203.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 382099 386661 . - . ID=gene-AD39_RS07545;Name=sslE;gbkey=Gene;gene=sslE;gene_biotype=protein_coding;locus_tag=AD39_RS07545;old_locus_tag=AD39_3502 NZ_JJLH01000045.1 Protein Homology CDS 382099 386661 . - 0 ID=cds-WP_032286113.1;Parent=gene-AD39_RS07545;Dbxref=GenBank:WP_032286113.1;Name=WP_032286113.1;gbkey=CDS;gene=sslE;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026189.1;locus_tag=AD39_RS07545;product=lipoprotein metalloprotease SslE;protein_id=WP_032286113.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 387147 388829 . - . ID=gene-AD39_RS07540;Name=glcA;gbkey=Gene;gene=glcA;gene_biotype=protein_coding;locus_tag=AD39_RS07540;old_locus_tag=AD39_3504 NZ_JJLH01000045.1 Protein Homology CDS 387147 388829 . - 0 ID=cds-WP_032287616.1;Parent=gene-AD39_RS07540;Dbxref=GenBank:WP_032287616.1;Name=WP_032287616.1;gbkey=CDS;gene=glcA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417449.1;locus_tag=AD39_RS07540;product=glycolate permease GlcA;protein_id=WP_032287616.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 389185 391356 . - . ID=gene-AD39_RS07535;Name=glcB;gbkey=Gene;gene=glcB;gene_biotype=protein_coding;locus_tag=AD39_RS07535;old_locus_tag=AD39_3505 NZ_JJLH01000045.1 Protein Homology CDS 389185 391356 . - 0 ID=cds-WP_000084056.1;Parent=gene-AD39_RS07535;Dbxref=GenBank:WP_000084056.1;Name=WP_000084056.1;Ontology_term=GO:0006097,GO:0004474;gbkey=CDS;gene=glcB;go_function=malate synthase activity|0004474||IEA;go_process=glyoxylate cycle|0006097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417450.1;locus_tag=AD39_RS07535;product=malate synthase G;protein_id=WP_000084056.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 391378 391782 . - . ID=gene-AD39_RS07530;Name=glcG;gbkey=Gene;gene=glcG;gene_biotype=protein_coding;locus_tag=AD39_RS07530;old_locus_tag=AD39_3506 NZ_JJLH01000045.1 Protein Homology CDS 391378 391782 . - 0 ID=cds-WP_000853256.1;Parent=gene-AD39_RS07530;Dbxref=GenBank:WP_000853256.1;Name=WP_000853256.1;gbkey=CDS;gene=glcG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417451.1;locus_tag=AD39_RS07530;product=GlcG family protein;protein_id=WP_000853256.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 391787 393010 . - . ID=gene-AD39_RS07525;Name=glcF;gbkey=Gene;gene=glcF;gene_biotype=protein_coding;locus_tag=AD39_RS07525;old_locus_tag=AD39_3507 NZ_JJLH01000045.1 Protein Homology CDS 391787 393010 . - 0 ID=cds-WP_001194655.1;Parent=gene-AD39_RS07525;Dbxref=GenBank:WP_001194655.1;Name=WP_001194655.1;Ontology_term=GO:0051536;gbkey=CDS;gene=glcF;go_function=iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026190.1;locus_tag=AD39_RS07525;product=glycolate oxidase subunit GlcF;protein_id=WP_001194655.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 393021 394073 . - . ID=gene-AD39_RS07520;Name=glcE;gbkey=Gene;gene=glcE;gene_biotype=protein_coding;locus_tag=AD39_RS07520;old_locus_tag=AD39_3508 NZ_JJLH01000045.1 Protein Homology CDS 393021 394073 . - 0 ID=cds-WP_000943059.1;Parent=gene-AD39_RS07520;Dbxref=GenBank:WP_000943059.1;Name=WP_000943059.1;Ontology_term=GO:0016491,GO:0071949;gbkey=CDS;gene=glcE;go_function=oxidoreductase activity|0016491||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026191.1;locus_tag=AD39_RS07520;product=glycolate oxidase subunit GlcE;protein_id=WP_000943059.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 394073 395572 . - . ID=gene-AD39_RS07515;Name=glcD;gbkey=Gene;gene=glcD;gene_biotype=protein_coding;locus_tag=AD39_RS07515;old_locus_tag=AD39_3509 NZ_JJLH01000045.1 Protein Homology CDS 394073 395572 . - 0 ID=cds-WP_000026117.1;Parent=gene-AD39_RS07515;Dbxref=GenBank:WP_000026117.1;Name=WP_000026117.1;Ontology_term=GO:0003973,GO:0071949,GO:0009339;gbkey=CDS;gene=glcD;go_component=glycolate oxidase complex|0009339||IEA;go_function=(S)-2-hydroxy-acid oxidase activity|0003973||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417453.1;locus_tag=AD39_RS07515;product=glycolate oxidase subunit GlcD;protein_id=WP_000026117.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 395823 396587 . + . ID=gene-AD39_RS07510;Name=glcC;gbkey=Gene;gene=glcC;gene_biotype=protein_coding;locus_tag=AD39_RS07510;old_locus_tag=AD39_3510 NZ_JJLH01000045.1 Protein Homology CDS 395823 396587 . + 0 ID=cds-WP_001297764.1;Parent=gene-AD39_RS07510;Dbxref=GenBank:WP_001297764.1;Name=WP_001297764.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=glcC;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417454.1;locus_tag=AD39_RS07510;product=transcriptional regulator GlcC;protein_id=WP_001297764.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 396594 397736 . - . ID=gene-AD39_RS07505;Name=yghO;gbkey=Gene;gene=yghO;gene_biotype=protein_coding;locus_tag=AD39_RS07505;old_locus_tag=AD39_3511 NZ_JJLH01000045.1 Protein Homology CDS 396594 397736 . - 0 ID=cds-WP_000388786.1;Parent=gene-AD39_RS07505;Dbxref=GenBank:WP_000388786.1;Name=WP_000388786.1;gbkey=CDS;gene=yghO;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001327865.1;locus_tag=AD39_RS07505;product=protein YghO;protein_id=WP_000388786.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 398140 399828 . + . ID=gene-AD39_RS07500;Name=AD39_RS07500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07500;old_locus_tag=AD39_3512 NZ_JJLH01000045.1 Protein Homology CDS 398140 399828 . + 0 ID=cds-WP_001345956.1;Parent=gene-AD39_RS07500;Dbxref=GenBank:WP_001345956.1;Name=WP_001345956.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001383581.1;locus_tag=AD39_RS07500;product=fatty acyl-AMP ligase;protein_id=WP_001345956.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 399825 400739 . + . ID=gene-AD39_RS07495;Name=AD39_RS07495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07495;old_locus_tag=AD39_3513 NZ_JJLH01000045.1 Protein Homology CDS 399825 400739 . + 0 ID=cds-WP_001077135.1;Parent=gene-AD39_RS07495;Dbxref=GenBank:WP_001077135.1;Name=WP_001077135.1;Ontology_term=GO:0016491,GO:0051287,GO:0070403;gbkey=CDS;go_function=oxidoreductase activity|0016491||IEA,NAD binding|0051287||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001481799.1;locus_tag=AD39_RS07495;product=NAD-dependent epimerase/dehydratase family protein;protein_id=WP_001077135.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 400771 401019 . + . ID=gene-AD39_RS07490;Name=AD39_RS07490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07490;old_locus_tag=AD39_3514 NZ_JJLH01000045.1 Protein Homology CDS 400771 401019 . + 0 ID=cds-WP_000248097.1;Parent=gene-AD39_RS07490;Dbxref=GenBank:WP_000248097.1;Name=WP_000248097.1;Ontology_term=GO:0006633,GO:0009245,GO:0000035,GO:0000036;gbkey=CDS;go_function=acyl binding|0000035||IEA,acyl carrier activity|0000036||IEA;go_process=fatty acid biosynthetic process|0006633||IEA,lipid A biosynthetic process|0009245||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708794.1;locus_tag=AD39_RS07490;product=acyl carrier protein;protein_id=WP_000248097.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 401019 402191 . + . ID=gene-AD39_RS07485;Name=spt;gbkey=Gene;gene=spt;gene_biotype=protein_coding;locus_tag=AD39_RS07485;old_locus_tag=AD39_3515 NZ_JJLH01000045.1 Protein Homology CDS 401019 402191 . + 0 ID=cds-WP_000524972.1;Parent=gene-AD39_RS07485;Dbxref=GenBank:WP_000524972.1;Name=WP_000524972.1;Ontology_term=GO:0046513,GO:0004758,GO:0030170;gbkey=CDS;gene=spt;go_function=serine C-palmitoyltransferase activity|0004758||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=ceramide biosynthetic process|0046513||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020239167.1;locus_tag=AD39_RS07485;product=serine palmitoyltransferase;protein_id=WP_000524972.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 402226 403305 . - . ID=gene-AD39_RS07480;Name=lptG;gbkey=Gene;gene=lptG;gene_biotype=protein_coding;locus_tag=AD39_RS07480;old_locus_tag=AD39_3516 NZ_JJLH01000045.1 Protein Homology CDS 402226 403305 . - 0 ID=cds-WP_032287617.1;Parent=gene-AD39_RS07480;Dbxref=GenBank:WP_032287617.1;Name=WP_032287617.1;Ontology_term=GO:0055085,GO:0015221,GO:0043190;gbkey=CDS;gene=lptG;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708797.1;locus_tag=AD39_RS07480;product=LPS export ABC transporter permease LptG;protein_id=WP_032287617.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 403302 404372 . - . ID=gene-AD39_RS07475;Name=lptF;gbkey=Gene;gene=lptF;gene_biotype=protein_coding;locus_tag=AD39_RS07475;old_locus_tag=AD39_3517 NZ_JJLH01000045.1 Protein Homology CDS 403302 404372 . - 0 ID=cds-WP_032287618.1;Parent=gene-AD39_RS07475;Dbxref=GenBank:WP_032287618.1;Name=WP_032287618.1;Ontology_term=GO:0055085,GO:0015221,GO:0043190;gbkey=CDS;gene=lptF;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708798.1;locus_tag=AD39_RS07475;product=LPS export ABC transporter permease LptF;protein_id=WP_032287618.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 404402 404962 . - . ID=gene-AD39_RS07470;Name=AD39_RS07470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07470;old_locus_tag=AD39_3518 NZ_JJLH01000045.1 Protein Homology CDS 404402 404962 . - 0 ID=cds-WP_032283525.1;Parent=gene-AD39_RS07470;Dbxref=GenBank:WP_032283525.1;Name=WP_032283525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708799.2;locus_tag=AD39_RS07470;product=YtfJ family protein;protein_id=WP_032283525.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 404974 405798 . - . ID=gene-AD39_RS07465;Name=AD39_RS07465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07465;old_locus_tag=AD39_3519 NZ_JJLH01000045.1 Protein Homology CDS 404974 405798 . - 0 ID=cds-WP_032283526.1;Parent=gene-AD39_RS07465;Dbxref=GenBank:WP_032283526.1;Name=WP_032283526.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708800.1;locus_tag=AD39_RS07465;product=hypothetical protein;protein_id=WP_032283526.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 405798 407147 . - . ID=gene-AD39_RS07460;Name=AD39_RS07460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07460;old_locus_tag=AD39_3520 NZ_JJLH01000045.1 Protein Homology CDS 405798 407147 . - 0 ID=cds-WP_001501401.1;Parent=gene-AD39_RS07460;Dbxref=GenBank:WP_001501401.1;Name=WP_001501401.1;Ontology_term=GO:0140327,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=flippase activity|0140327||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708801.1;locus_tag=AD39_RS07460;product=lipopolysaccharide biosynthesis protein;protein_id=WP_001501401.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 407193 407951 . - . ID=gene-AD39_RS07455;Name=AD39_RS07455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07455;old_locus_tag=AD39_3521 NZ_JJLH01000045.1 Protein Homology CDS 407193 407951 . - 0 ID=cds-WP_000339532.1;Parent=gene-AD39_RS07455;Dbxref=GenBank:WP_000339532.1;Name=WP_000339532.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417458.1;locus_tag=AD39_RS07455;product=hypothetical protein;protein_id=WP_000339532.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 407983 408696 . - . ID=gene-AD39_RS07450;Name=yghS;gbkey=Gene;gene=yghS;gene_biotype=protein_coding;locus_tag=AD39_RS07450;old_locus_tag=AD39_3522 NZ_JJLH01000045.1 Protein Homology CDS 407983 408696 . - 0 ID=cds-WP_001076260.1;Parent=gene-AD39_RS07450;Dbxref=GenBank:WP_001076260.1;Name=WP_001076260.1;Ontology_term=GO:0006233,GO:0006235,GO:0016310,GO:0004798,GO:0005524;gbkey=CDS;gene=yghS;go_function=dTMP kinase activity|0004798||IEA,ATP binding|0005524||IEA;go_process=dTDP biosynthetic process|0006233||IEA,dTTP biosynthetic process|0006235||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417459.1;locus_tag=AD39_RS07450;product=dTMP kinase;protein_id=WP_001076260.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 408870 409562 . + . ID=gene-AD39_RS07445;Name=yghT;gbkey=Gene;gene=yghT;gene_biotype=protein_coding;locus_tag=AD39_RS07445;old_locus_tag=AD39_3523 NZ_JJLH01000045.1 Protein Homology CDS 408870 409562 . + 0 ID=cds-WP_001190783.1;Parent=gene-AD39_RS07445;Dbxref=GenBank:WP_001190783.1;Name=WP_001190783.1;Ontology_term=GO:0006233,GO:0006235,GO:0016310,GO:0004798,GO:0005524;gbkey=CDS;gene=yghT;go_function=dTMP kinase activity|0004798||IEA,ATP binding|0005524||IEA;go_process=dTDP biosynthetic process|0006233||IEA,dTTP biosynthetic process|0006235||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417460.1;locus_tag=AD39_RS07445;product=dTMP kinase;protein_id=WP_001190783.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 409611 411110 . - . ID=gene-AD39_RS07440;Name=pitB;gbkey=Gene;gene=pitB;gene_biotype=protein_coding;locus_tag=AD39_RS07440;old_locus_tag=AD39_3524 NZ_JJLH01000045.1 Protein Homology CDS 409611 411110 . - 0 ID=cds-WP_000933296.1;Parent=gene-AD39_RS07440;Dbxref=GenBank:WP_000933296.1;Name=WP_000933296.1;gbkey=CDS;gene=pitB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417461.1;locus_tag=AD39_RS07440;product=inorganic phosphate transporter PitB;protein_id=WP_000933296.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 411402 413261 . - . ID=gene-AD39_RS07435;Name=gss;gbkey=Gene;gene=gss;gene_biotype=protein_coding;locus_tag=AD39_RS07435;old_locus_tag=AD39_3525 NZ_JJLH01000045.1 Protein Homology CDS 411402 413261 . - 0 ID=cds-WP_001297309.1;Parent=gene-AD39_RS07435;Dbxref=GenBank:WP_001297309.1;Name=WP_001297309.1;gbkey=CDS;gene=gss;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417462.1;locus_tag=AD39_RS07435;product=bifunctional glutathionylspermidine amidase/synthase;protein_id=WP_001297309.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 413466 414332 . + . ID=gene-AD39_RS07430;Name=yghU;gbkey=Gene;gene=yghU;gene_biotype=protein_coding;locus_tag=AD39_RS07430;old_locus_tag=AD39_3526 NZ_JJLH01000045.1 Protein Homology CDS 413466 414332 . + 0 ID=cds-WP_032283527.1;Parent=gene-AD39_RS07430;Dbxref=GenBank:WP_032283527.1;Name=WP_032283527.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;gene=yghU;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311901.2;locus_tag=AD39_RS07430;product=glutathione-dependent disulfide-bond oxidoreductase;protein_id=WP_032283527.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 414455 414703 . - . ID=gene-AD39_RS07425;Name=hybG;gbkey=Gene;gene=hybG;gene_biotype=protein_coding;locus_tag=AD39_RS07425;old_locus_tag=AD39_3527 NZ_JJLH01000045.1 Protein Homology CDS 414455 414703 . - 0 ID=cds-WP_000334896.1;Parent=gene-AD39_RS07425;Dbxref=GenBank:WP_000334896.1;Name=WP_000334896.1;gbkey=CDS;gene=hybG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311902.1;locus_tag=AD39_RS07425;product=hydrogenase maturation factor HybG;protein_id=WP_000334896.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 414716 415057 . - . ID=gene-AD39_RS07420;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=AD39_RS07420;old_locus_tag=AD39_3528 NZ_JJLH01000045.1 Protein Homology CDS 414716 415057 . - 0 ID=cds-WP_000544953.1;Parent=gene-AD39_RS07420;Dbxref=GenBank:WP_000544953.1;Name=WP_000544953.1;Ontology_term=GO:0036211,GO:0008901,GO:0016151;gbkey=CDS;gene=hypA;go_function=ferredoxin hydrogenase activity|0008901||IEA,nickel cation binding|0016151||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417465.1;locus_tag=AD39_RS07420;product=hydrogenase maturation nickel metallochaperone HypA;protein_id=WP_000544953.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 415050 415538 . - . ID=gene-AD39_RS07415;Name=hybE;gbkey=Gene;gene=hybE;gene_biotype=protein_coding;locus_tag=AD39_RS07415;old_locus_tag=AD39_3529 NZ_JJLH01000045.1 Protein Homology CDS 415050 415538 . - 0 ID=cds-WP_000134014.1;Parent=gene-AD39_RS07415;Dbxref=GenBank:WP_000134014.1;Name=WP_000134014.1;gbkey=CDS;gene=hybE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417466.1;locus_tag=AD39_RS07415;product=hydrogenase-2 assembly chaperone;protein_id=WP_000134014.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 415531 416025 . - . ID=gene-AD39_RS07410;Name=hybD;gbkey=Gene;gene=hybD;gene_biotype=protein_coding;locus_tag=AD39_RS07410;old_locus_tag=AD39_3530 NZ_JJLH01000045.1 Protein Homology CDS 415531 416025 . - 0 ID=cds-WP_001221953.1;Parent=gene-AD39_RS07410;Dbxref=GenBank:WP_001221953.1;Name=WP_001221953.1;gbkey=CDS;gene=hybD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311905.1;locus_tag=AD39_RS07410;product=HyaD/HybD family hydrogenase maturation endopeptidase;protein_id=WP_001221953.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 416025 417728 . - . ID=gene-AD39_RS07405;Name=hybC;gbkey=Gene;gene=hybC;gene_biotype=protein_coding;locus_tag=AD39_RS07405;old_locus_tag=AD39_3531 NZ_JJLH01000045.1 Protein Homology CDS 416025 417728 . - 0 ID=cds-WP_000083065.1;Parent=gene-AD39_RS07405;Dbxref=GenBank:WP_000083065.1;Name=WP_000083065.1;Ontology_term=GO:0008901;gbkey=CDS;gene=hybC;go_function=ferredoxin hydrogenase activity|0008901||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311906.1;locus_tag=AD39_RS07405;product=hydrogenase 2 large subunit;protein_id=WP_000083065.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 417725 418903 . - . ID=gene-AD39_RS07400;Name=hybB;gbkey=Gene;gene=hybB;gene_biotype=protein_coding;locus_tag=AD39_RS07400;old_locus_tag=AD39_3532 NZ_JJLH01000045.1 Protein Homology CDS 417725 418903 . - 0 ID=cds-WP_000017694.1;Parent=gene-AD39_RS07400;Dbxref=GenBank:WP_000017694.1;Name=WP_000017694.1;gbkey=CDS;gene=hybB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417469.1;locus_tag=AD39_RS07400;product=Ni/Fe-hydrogenase cytochrome b subunit;protein_id=WP_000017694.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 418893 419879 . - . ID=gene-AD39_RS07395;Name=hybA;gbkey=Gene;gene=hybA;gene_biotype=protein_coding;locus_tag=AD39_RS07395;old_locus_tag=AD39_3533 NZ_JJLH01000045.1 Protein Homology CDS 418893 419879 . - 0 ID=cds-WP_001081876.1;Parent=gene-AD39_RS07395;Dbxref=GenBank:WP_001081876.1;Name=WP_001081876.1;gbkey=CDS;gene=hybA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311908.1;locus_tag=AD39_RS07395;product=hydrogenase 2 operon protein HybA;protein_id=WP_001081876.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 419882 421000 . - . ID=gene-AD39_RS07390;Name=hybO;gbkey=Gene;gene=hybO;gene_biotype=protein_coding;locus_tag=AD39_RS07390;old_locus_tag=AD39_3534 NZ_JJLH01000045.1 Protein Homology CDS 419882 421000 . - 0 ID=cds-WP_000145410.1;Parent=gene-AD39_RS07390;Dbxref=GenBank:WP_000145410.1;Name=WP_000145410.1;gbkey=CDS;gene=hybO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311909.1;locus_tag=AD39_RS07390;product=hydrogenase 2 small subunit;protein_id=WP_000145410.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 421189 421476 . - . ID=gene-AD39_RS07385;Name=yghW;gbkey=Gene;gene=yghW;gene_biotype=protein_coding;locus_tag=AD39_RS07385;old_locus_tag=AD39_3535 NZ_JJLH01000045.1 Protein Homology CDS 421189 421476 . - 0 ID=cds-WP_001059136.1;Parent=gene-AD39_RS07385;Dbxref=GenBank:WP_001059136.1;Name=WP_001059136.1;gbkey=CDS;gene=yghW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311910.1;locus_tag=AD39_RS07385;product=DUF2623 family protein YghW;protein_id=WP_001059136.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 421595 422482 . - . ID=gene-AD39_RS07380;Name=yghX;gbkey=Gene;gene=yghX;gene_biotype=protein_coding;locus_tag=AD39_RS07380;old_locus_tag=AD39_3536 NZ_JJLH01000045.1 Protein Homology CDS 421595 422482 . - 0 ID=cds-WP_001297303.1;Parent=gene-AD39_RS07380;Dbxref=GenBank:WP_001297303.1;Name=WP_001297303.1;gbkey=CDS;gene=yghX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311911.3;locus_tag=AD39_RS07380;product=YghX family hydrolase;protein_id=WP_001297303.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 422639 423679 . + . ID=gene-AD39_RS07375;Name=gpr;gbkey=Gene;gene=gpr;gene_biotype=protein_coding;locus_tag=AD39_RS07375;old_locus_tag=AD39_3537 NZ_JJLH01000045.1 Protein Homology CDS 422639 423679 . + 0 ID=cds-WP_000262154.1;Parent=gene-AD39_RS07375;Dbxref=GenBank:WP_000262154.1;Name=WP_000262154.1;gbkey=CDS;gene=gpr;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708818.1;locus_tag=AD39_RS07375;product=L-glyceraldehyde 3-phosphate reductase;protein_id=WP_000262154.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 423719 424213 . - . ID=gene-AD39_RS07370;Name=yqhA;gbkey=Gene;gene=yqhA;gene_biotype=protein_coding;locus_tag=AD39_RS07370;old_locus_tag=AD39_3538 NZ_JJLH01000045.1 Protein Homology CDS 423719 424213 . - 0 ID=cds-WP_000439331.1;Parent=gene-AD39_RS07370;Dbxref=GenBank:WP_000439331.1;Name=WP_000439331.1;gbkey=CDS;gene=yqhA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311913.1;locus_tag=AD39_RS07370;product=TIGR00645 family protein;protein_id=WP_000439331.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 424404 425288 . + . ID=gene-AD39_RS07365;Name=yghA;gbkey=Gene;gene=yghA;gene_biotype=protein_coding;locus_tag=AD39_RS07365;old_locus_tag=AD39_3539 NZ_JJLH01000045.1 Protein Homology CDS 424404 425288 . + 0 ID=cds-WP_000018760.1;Parent=gene-AD39_RS07365;Dbxref=GenBank:WP_000018760.1;Name=WP_000018760.1;gbkey=CDS;gene=yghA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311914.1;locus_tag=AD39_RS07365;product=NADP(+)-dependent aldehyde reductase;protein_id=WP_000018760.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 425327 425752 . - . ID=gene-AD39_RS07360;Name=exbD;gbkey=Gene;gene=exbD;gene_biotype=protein_coding;locus_tag=AD39_RS07360;old_locus_tag=AD39_3540 NZ_JJLH01000045.1 Protein Homology CDS 425327 425752 . - 0 ID=cds-WP_001240712.1;Parent=gene-AD39_RS07360;Dbxref=GenBank:WP_001240712.1;Name=WP_001240712.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=exbD;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311916.1;locus_tag=AD39_RS07360;product=TonB system transport protein ExbD;protein_id=WP_001240712.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 425759 426493 . - . ID=gene-AD39_RS07355;Name=exbB;gbkey=Gene;gene=exbB;gene_biotype=protein_coding;locus_tag=AD39_RS07355;old_locus_tag=AD39_3541 NZ_JJLH01000045.1 Protein Homology CDS 425759 426493 . - 0 ID=cds-WP_000527844.1;Parent=gene-AD39_RS07355;Dbxref=GenBank:WP_000527844.1;Name=WP_000527844.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=exbB;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311917.1;locus_tag=AD39_RS07355;product=tol-pal system-associated acyl-CoA thioesterase;protein_id=WP_000527844.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 426745 427932 . + . ID=gene-AD39_RS07350;Name=metC;gbkey=Gene;gene=metC;gene_biotype=protein_coding;locus_tag=AD39_RS07350;old_locus_tag=AD39_3542 NZ_JJLH01000045.1 Protein Homology CDS 426745 427932 . + 0 ID=cds-WP_000763931.1;Parent=gene-AD39_RS07350;Dbxref=GenBank:WP_000763931.1;Name=WP_000763931.1;Ontology_term=GO:0006520,GO:0019346,GO:0030170,GO:0047804;gbkey=CDS;gene=metC;go_function=pyridoxal phosphate binding|0030170||IEA,cysteine-S-conjugate beta-lyase activity|0047804||IEA;go_process=amino acid metabolic process|0006520||IEA,transsulfuration|0019346||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417481.1;locus_tag=AD39_RS07350;product=cystathionine beta-lyase;protein_id=WP_000763931.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 428072 428731 . + . ID=gene-AD39_RS07345;Name=yghB;gbkey=Gene;gene=yghB;gene_biotype=protein_coding;locus_tag=AD39_RS07345;old_locus_tag=AD39_3543 NZ_JJLH01000045.1 Protein Homology CDS 428072 428731 . + 0 ID=cds-WP_000268419.1;Parent=gene-AD39_RS07345;Dbxref=GenBank:WP_000268419.1;Name=WP_000268419.1;gbkey=CDS;gene=yghB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311920.1;locus_tag=AD39_RS07345;product=DedA family general envelope maintenance protein YghB;protein_id=WP_000268419.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 428771 429670 . - . ID=gene-AD39_RS07340;Name=yqhC;gbkey=Gene;gene=yqhC;gene_biotype=protein_coding;locus_tag=AD39_RS07340;old_locus_tag=AD39_3544 NZ_JJLH01000045.1 Protein Homology CDS 428771 429670 . - 0 ID=cds-WP_001416880.1;Parent=gene-AD39_RS07340;Dbxref=GenBank:WP_001416880.1;Name=WP_001416880.1;gbkey=CDS;gene=yqhC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001407451.1;locus_tag=AD39_RS07340;product=DNA-binding transcriptional regulator YqhC;protein_id=WP_001416880.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 429864 431027 . + . ID=gene-AD39_RS07330;Name=yqhD;gbkey=Gene;gene=yqhD;gene_biotype=protein_coding;locus_tag=AD39_RS07330;old_locus_tag=AD39_3546 NZ_JJLH01000045.1 Protein Homology CDS 429864 431027 . + 0 ID=cds-WP_001058807.1;Parent=gene-AD39_RS07330;Dbxref=GenBank:WP_001058807.1;Name=WP_001058807.1;Ontology_term=GO:0046872,GO:1990362;gbkey=CDS;gene=yqhD;go_function=metal ion binding|0046872||IEA,butanol dehydrogenase (NAD+) activity|1990362||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417484.1;locus_tag=AD39_RS07330;product=alcohol dehydrogenase;protein_id=WP_001058807.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 431132 431959 . + . ID=gene-AD39_RS07325;Name=dkgA;gbkey=Gene;gene=dkgA;gene_biotype=protein_coding;locus_tag=AD39_RS07325;old_locus_tag=AD39_3547 NZ_JJLH01000045.1 Protein Homology CDS 431132 431959 . + 0 ID=cds-WP_000013149.1;Parent=gene-AD39_RS07325;Dbxref=GenBank:WP_000013149.1;Name=WP_000013149.1;Ontology_term=GO:0050580;gbkey=CDS;gene=dkgA;go_function=2%2C5-didehydrogluconate reductase activity|0050580||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417485.4;locus_tag=AD39_RS07325;product=2%2C5-didehydrogluconate reductase DkgA;protein_id=WP_000013149.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 432159 433085 . + . ID=gene-AD39_RS07320;Name=yqhG;gbkey=Gene;gene=yqhG;gene_biotype=protein_coding;locus_tag=AD39_RS07320;old_locus_tag=AD39_3549 NZ_JJLH01000045.1 Protein Homology CDS 432159 433085 . + 0 ID=cds-WP_032283532.1;Parent=gene-AD39_RS07320;Dbxref=GenBank:WP_032283532.1;Name=WP_032283532.1;gbkey=CDS;gene=yqhG;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026195.1;locus_tag=AD39_RS07320;product=YbjP/YqhG family protein;protein_id=WP_032283532.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 433136 433393 . + . ID=gene-AD39_RS07315;Name=yqhH;gbkey=Gene;gene=yqhH;gene_biotype=protein_coding;locus_tag=AD39_RS07315;old_locus_tag=AD39_3550 NZ_JJLH01000045.1 Protein Homology CDS 433136 433393 . + 0 ID=cds-WP_000848528.1;Parent=gene-AD39_RS07315;Dbxref=GenBank:WP_000848528.1;Name=WP_000848528.1;gbkey=CDS;gene=yqhH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417487.1;locus_tag=AD39_RS07315;product=lipoprotein YqhH;protein_id=WP_000848528.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 433436 435655 . - . ID=gene-AD39_RS07310;Name=ygiQ;gbkey=Gene;gene=ygiQ;gene_biotype=protein_coding;locus_tag=AD39_RS07310;old_locus_tag=AD39_3551 NZ_JJLH01000045.1 Protein Homology CDS 433436 435655 . - 0 ID=cds-WP_000095187.1;Parent=gene-AD39_RS07310;Dbxref=GenBank:WP_000095187.1;Name=WP_000095187.1;Ontology_term=GO:1904047;gbkey=CDS;gene=ygiQ;go_function=S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026196.1;locus_tag=AD39_RS07310;product=YgiQ family radical SAM protein;protein_id=WP_000095187.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 435766 437178 . - . ID=gene-AD39_RS07305;Name=ftsP;gbkey=Gene;gene=ftsP;gene_biotype=protein_coding;locus_tag=AD39_RS07305;old_locus_tag=AD39_3552 NZ_JJLH01000045.1 Protein Homology CDS 435766 437178 . - 0 ID=cds-WP_032179926.1;Parent=gene-AD39_RS07305;Dbxref=GenBank:WP_032179926.1;Name=WP_032179926.1;Ontology_term=GO:0043093,GO:0016491;gbkey=CDS;gene=ftsP;go_function=oxidoreductase activity|0016491||IEA;go_process=FtsZ-dependent cytokinesis|0043093||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311928.1;locus_tag=AD39_RS07305;product=cell division protein FtsP;protein_id=WP_032179926.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 437253 437990 . - . ID=gene-AD39_RS07300;Name=plsC;gbkey=Gene;gene=plsC;gene_biotype=protein_coding;gene_synonym=parF;locus_tag=AD39_RS07300;old_locus_tag=AD39_3553 NZ_JJLH01000045.1 Protein Homology CDS 437253 437990 . - 0 ID=cds-WP_000965712.1;Parent=gene-AD39_RS07300;Dbxref=GenBank:WP_000965712.1;Name=WP_000965712.1;gbkey=CDS;gene=plsC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311929.1;locus_tag=AD39_RS07300;product=1-acylglycerol-3-phosphate O-acyltransferase;protein_id=WP_000965712.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 438223 440481 . - . ID=gene-AD39_RS07295;Name=parC;gbkey=Gene;gene=parC;gene_biotype=protein_coding;locus_tag=AD39_RS07295;old_locus_tag=AD39_3554 NZ_JJLH01000045.1 Protein Homology CDS 438223 440481 . - 0 ID=cds-WP_001281881.1;Parent=gene-AD39_RS07295;Dbxref=GenBank:WP_001281881.1;Name=WP_001281881.1;Ontology_term=GO:0006265,GO:0003918,GO:0009340;gbkey=CDS;gene=parC;go_component=DNA topoisomerase IV complex|0009340||IEA;go_function=DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311930.1;locus_tag=AD39_RS07295;product=DNA topoisomerase IV subunit A;protein_id=WP_001281881.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 440619 442226 . - . ID=gene-AD39_RS07290;Name=ygiS;gbkey=Gene;gene=ygiS;gene_biotype=protein_coding;locus_tag=AD39_RS07290;old_locus_tag=AD39_3555 NZ_JJLH01000045.1 Protein Homology CDS 440619 442226 . - 0 ID=cds-WP_032283533.1;Parent=gene-AD39_RS07290;Dbxref=GenBank:WP_032283533.1;Name=WP_032283533.1;gbkey=CDS;gene=ygiS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417492.1;locus_tag=AD39_RS07290;product=ABC transporter substrate-binding protein;protein_id=WP_032283533.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 442359 442754 . - . ID=gene-AD39_RS07285;Name=mqsA;gbkey=Gene;gene=mqsA;gene_biotype=protein_coding;locus_tag=AD39_RS07285;old_locus_tag=AD39_3556 NZ_JJLH01000045.1 Protein Homology CDS 442359 442754 . - 0 ID=cds-WP_000650107.1;Parent=gene-AD39_RS07285;Dbxref=GenBank:WP_000650107.1;Name=WP_000650107.1;gbkey=CDS;gene=mqsA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417493.1;locus_tag=AD39_RS07285;product=type II toxin-antitoxin system antitoxin MqsA;protein_id=WP_000650107.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 442756 443052 . - . ID=gene-AD39_RS0125205;Name=mqsR;gbkey=Gene;gene=mqsR;gene_biotype=protein_coding;locus_tag=AD39_RS0125205 NZ_JJLH01000045.1 Protein Homology CDS 442756 443052 . - 0 ID=cds-WP_000415584.1;Parent=gene-AD39_RS0125205;Dbxref=GenBank:WP_000415584.1;Name=WP_000415584.1;gbkey=CDS;gene=mqsR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417494.1;locus_tag=AD39_RS0125205;product=type II toxin-antitoxin system toxin MqsR;protein_id=WP_000415584.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 443257 443739 . - . ID=gene-AD39_RS07280;Name=ygiV;gbkey=Gene;gene=ygiV;gene_biotype=protein_coding;locus_tag=AD39_RS07280;old_locus_tag=AD39_3557 NZ_JJLH01000045.1 Protein Homology CDS 443257 443739 . - 0 ID=cds-WP_000183494.1;Parent=gene-AD39_RS07280;Dbxref=GenBank:WP_000183494.1;Name=WP_000183494.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700,GO:0043565;gbkey=CDS;gene=ygiV;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708835.1;locus_tag=AD39_RS07280;product=AraC family transcriptional regulator;protein_id=WP_000183494.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 443792 444184 . - . ID=gene-AD39_RS07275;Name=ygiW;gbkey=Gene;gene=ygiW;gene_biotype=protein_coding;locus_tag=AD39_RS07275;old_locus_tag=AD39_3558 NZ_JJLH01000045.1 Protein Homology CDS 443792 444184 . - 0 ID=cds-WP_000712658.1;Parent=gene-AD39_RS07275;Dbxref=GenBank:WP_000712658.1;Name=WP_000712658.1;gbkey=CDS;gene=ygiW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311933.1;locus_tag=AD39_RS07275;product=OB fold stress tolerance protein YgiW;protein_id=WP_000712658.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 444336 444995 . + . ID=gene-AD39_RS07270;Name=qseB;gbkey=Gene;gene=qseB;gene_biotype=protein_coding;locus_tag=AD39_RS07270;old_locus_tag=AD39_3559 NZ_JJLH01000045.1 Protein Homology CDS 444336 444995 . + 0 ID=cds-WP_001221502.1;Parent=gene-AD39_RS07270;Dbxref=GenBank:WP_001221502.1;Name=WP_001221502.1;gbkey=CDS;gene=qseB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311934.1;locus_tag=AD39_RS07270;product=quorum sensing response regulator transcription factor QseB;protein_id=WP_001221502.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 444992 446341 . + . ID=gene-AD39_RS07265;Name=qseC;gbkey=Gene;gene=qseC;gene_biotype=protein_coding;locus_tag=AD39_RS07265;old_locus_tag=AD39_3560 NZ_JJLH01000045.1 Protein Homology CDS 444992 446341 . + 0 ID=cds-WP_000673354.1;Parent=gene-AD39_RS07265;Dbxref=GenBank:WP_000673354.1;Name=WP_000673354.1;Ontology_term=GO:0007165,GO:0000155;gbkey=CDS;gene=qseC;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_306641.1;locus_tag=AD39_RS07265;product=quorum sensing histidine kinase QseC;protein_id=WP_000673354.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 446387 446719 . - . ID=gene-AD39_RS0125210;Name=ygiZ;gbkey=Gene;gene=ygiZ;gene_biotype=protein_coding;locus_tag=AD39_RS0125210 NZ_JJLH01000045.1 Protein Homology CDS 446387 446719 . - 0 ID=cds-WP_000912120.1;Parent=gene-AD39_RS0125210;Dbxref=GenBank:WP_000912120.1;Name=WP_000912120.1;gbkey=CDS;gene=ygiZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417499.1;locus_tag=AD39_RS0125210;product=DUF2645 family protein;protein_id=WP_000912120.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 447038 447619 . + . ID=gene-AD39_RS07260;Name=mdaB;gbkey=Gene;gene=mdaB;gene_biotype=protein_coding;locus_tag=AD39_RS07260;old_locus_tag=AD39_3561 NZ_JJLH01000045.1 Protein Homology CDS 447038 447619 . + 0 ID=cds-WP_000065430.1;Parent=gene-AD39_RS07260;Dbxref=GenBank:WP_000065430.1;Name=WP_000065430.1;gbkey=CDS;gene=mdaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311937.1;locus_tag=AD39_RS07260;product=NADPH:quinone oxidoreductase MdaB;protein_id=WP_000065430.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 447650 447964 . + . ID=gene-AD39_RS07255;Name=ygiN;gbkey=Gene;gene=ygiN;gene_biotype=protein_coding;locus_tag=AD39_RS07255;old_locus_tag=AD39_3562 NZ_JJLH01000045.1 Protein Homology CDS 447650 447964 . + 0 ID=cds-WP_000958598.1;Parent=gene-AD39_RS07255;Dbxref=GenBank:WP_000958598.1;Name=WP_000958598.1;Ontology_term=GO:0017000,GO:0004497,GO:0016491;gbkey=CDS;gene=ygiN;go_function=monooxygenase activity|0004497||IEA,oxidoreductase activity|0016491||IEA;go_process=antibiotic biosynthetic process|0017000||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311938.1;locus_tag=AD39_RS07255;product=putative quinol monooxygenase;protein_id=WP_000958598.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 448012 449904 . - . ID=gene-AD39_RS07250;Name=parE;gbkey=Gene;gene=parE;gene_biotype=protein_coding;locus_tag=AD39_RS07250;old_locus_tag=AD39_3563 NZ_JJLH01000045.1 Protein Homology CDS 448012 449904 . - 0 ID=cds-WP_000195296.1;Parent=gene-AD39_RS07250;Dbxref=GenBank:WP_000195296.1;Name=WP_000195296.1;Ontology_term=GO:0006265,GO:0003677,GO:0003918,GO:0005524,GO:0005694;gbkey=CDS;gene=parE;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417502.1;locus_tag=AD39_RS07250;product=DNA topoisomerase IV subunit B;protein_id=WP_000195296.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 449933 450514 . - . ID=gene-AD39_RS07245;Name=yqiA;gbkey=Gene;gene=yqiA;gene_biotype=protein_coding;locus_tag=AD39_RS07245;old_locus_tag=AD39_3564 NZ_JJLH01000045.1 Protein Homology CDS 449933 450514 . - 0 ID=cds-WP_000105733.1;Parent=gene-AD39_RS07245;Dbxref=GenBank:WP_000105733.1;Name=WP_000105733.1;gbkey=CDS;gene=yqiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311946.1;locus_tag=AD39_RS07245;product=esterase YqiA;protein_id=WP_000105733.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 450514 451341 . - . ID=gene-AD39_RS07240;Name=cpdA;gbkey=Gene;gene=cpdA;gene_biotype=protein_coding;locus_tag=AD39_RS07240;old_locus_tag=AD39_3565 NZ_JJLH01000045.1 Protein Homology CDS 450514 451341 . - 0 ID=cds-WP_000444747.1;Parent=gene-AD39_RS07240;Dbxref=GenBank:WP_000444747.1;Name=WP_000444747.1;Ontology_term=GO:0004115;gbkey=CDS;gene=cpdA;go_function=3'%2C5'-cyclic-AMP phosphodiesterase activity|0004115||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311947.1;locus_tag=AD39_RS07240;product=3'%2C5'-cyclic-AMP phosphodiesterase;protein_id=WP_000444747.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 451366 451788 . - . ID=gene-AD39_RS07235;Name=yqiB;gbkey=Gene;gene=yqiB;gene_biotype=protein_coding;locus_tag=AD39_RS07235;old_locus_tag=AD39_3566 NZ_JJLH01000045.1 Protein Homology CDS 451366 451788 . - 0 ID=cds-WP_000833393.1;Parent=gene-AD39_RS07235;Dbxref=GenBank:WP_000833393.1;Name=WP_000833393.1;gbkey=CDS;gene=yqiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311948.1;locus_tag=AD39_RS07235;product=DUF1249 family protein;protein_id=WP_000833393.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 451789 452418 . - . ID=gene-AD39_RS07230;Name=nudF;gbkey=Gene;gene=nudF;gene_biotype=protein_coding;locus_tag=AD39_RS07230;old_locus_tag=AD39_3567 NZ_JJLH01000045.1 Protein Homology CDS 451789 452418 . - 0 ID=cds-WP_001490085.1;Parent=gene-AD39_RS07230;Dbxref=GenBank:WP_001490085.1;Name=WP_001490085.1;Ontology_term=GO:0016787,GO:0046872;gbkey=CDS;gene=nudF;go_function=hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311949.1;locus_tag=AD39_RS07230;product=ADP-ribose diphosphatase;protein_id=WP_001490085.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 452623 454104 . + . ID=gene-AD39_RS07225;Name=tolC;gbkey=Gene;gene=tolC;gene_biotype=protein_coding;locus_tag=AD39_RS07225;old_locus_tag=AD39_3568 NZ_JJLH01000045.1 Protein Homology CDS 452623 454104 . + 0 ID=cds-WP_000735278.1;Parent=gene-AD39_RS07225;Dbxref=GenBank:WP_000735278.1;Name=WP_000735278.1;Ontology_term=GO:0055085,GO:0015562;gbkey=CDS;gene=tolC;go_function=efflux transmembrane transporter activity|0015562||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417507.2;locus_tag=AD39_RS07225;product=outer membrane channel protein TolC;protein_id=WP_000735278.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 454252 454923 . + . ID=gene-AD39_RS07220;Name=ygiB;gbkey=Gene;gene=ygiB;gene_biotype=protein_coding;locus_tag=AD39_RS07220;old_locus_tag=AD39_3569 NZ_JJLH01000045.1 Protein Homology CDS 454252 454923 . + 0 ID=cds-WP_000831543.1;Parent=gene-AD39_RS07220;Dbxref=GenBank:WP_000831543.1;Name=WP_000831543.1;gbkey=CDS;gene=ygiB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417509.3;locus_tag=AD39_RS07220;product=DUF1190 family protein;protein_id=WP_000831543.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 454929 456089 . + . ID=gene-AD39_RS07215;Name=ygiC;gbkey=Gene;gene=ygiC;gene_biotype=protein_coding;locus_tag=AD39_RS07215;old_locus_tag=AD39_3570 NZ_JJLH01000045.1 Protein Homology CDS 454929 456089 . + 0 ID=cds-WP_000442860.1;Parent=gene-AD39_RS07215;Dbxref=GenBank:WP_000442860.1;Name=WP_000442860.1;Ontology_term=GO:0005524,GO:0016874,GO:0046872;gbkey=CDS;gene=ygiC;go_function=ATP binding|0005524||IEA,ligase activity|0016874||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123077.1;locus_tag=AD39_RS07215;product=glutathionylspermidine synthase family protein;protein_id=WP_000442860.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 456127 456915 . - . ID=gene-AD39_RS07210;Name=ygiD;gbkey=Gene;gene=ygiD;gene_biotype=protein_coding;locus_tag=AD39_RS07210;old_locus_tag=AD39_3571 NZ_JJLH01000045.1 Protein Homology CDS 456127 456915 . - 0 ID=cds-WP_001299419.1;Parent=gene-AD39_RS07210;Dbxref=GenBank:WP_001299419.1;Name=WP_001299419.1;gbkey=CDS;gene=ygiD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001356237.1;locus_tag=AD39_RS07210;product=4%2C5-DOPA dioxygenase extradiol;protein_id=WP_001299419.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 457058 457831 . + . ID=gene-AD39_RS07205;Name=zupT;gbkey=Gene;gene=zupT;gene_biotype=protein_coding;locus_tag=AD39_RS07205;old_locus_tag=AD39_3572 NZ_JJLH01000045.1 Protein Homology CDS 457058 457831 . + 0 ID=cds-WP_001295627.1;Parent=gene-AD39_RS07205;Dbxref=GenBank:WP_001295627.1;Name=WP_001295627.1;gbkey=CDS;gene=zupT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311955.1;locus_tag=AD39_RS07205;product=zinc transporter ZupT;protein_id=WP_001295627.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 457889 458059 . - . ID=gene-AD39_RS29505;Name=yqiD;gbkey=Gene;gene=yqiD;gene_biotype=protein_coding;locus_tag=AD39_RS29505;old_locus_tag=AD39_3573 NZ_JJLH01000045.1 Protein Homology CDS 457889 458059 . - 0 ID=cds-WP_000469266.1;Parent=gene-AD39_RS29505;Dbxref=GenBank:WP_000469266.1;Name=WP_000469266.1;gbkey=CDS;gene=yqiD;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518818.1;locus_tag=AD39_RS29505;product=protein YqiD;protein_id=WP_000469266.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 458320 458973 . - . ID=gene-AD39_RS07195;Name=ribB;gbkey=Gene;gene=ribB;gene_biotype=protein_coding;locus_tag=AD39_RS07195;old_locus_tag=AD39_3574 NZ_JJLH01000045.1 Protein Homology CDS 458320 458973 . - 0 ID=cds-WP_001076983.1;Parent=gene-AD39_RS07195;Dbxref=GenBank:WP_001076983.1;Name=WP_001076983.1;Ontology_term=GO:0008686;gbkey=CDS;gene=ribB;go_function=3%2C4-dihydroxy-2-butanone-4-phosphate synthase activity|0008686||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311956.1;locus_tag=AD39_RS07195;product=3%2C4-dihydroxy-2-butanone-4-phosphate synthase;protein_id=WP_001076983.1;transl_table=11 NZ_JJLH01000045.1 cmsearch riboswitch 459077 459225 . - . ID=id-NZ_JJLH01000045.1:459077..459225;Dbxref=RFAM:RF00050;Note=FMN riboswitch;bound_moiety=flavin mononucleotide;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_JJLH01000045.1 RefSeq gene 459347 459637 . + . ID=gene-AD39_RS07190;Name=ubiK;gbkey=Gene;gene=ubiK;gene_biotype=protein_coding;gene_synonym=yqiC;locus_tag=AD39_RS07190;old_locus_tag=AD39_3575 NZ_JJLH01000045.1 Protein Homology CDS 459347 459637 . + 0 ID=cds-WP_001297598.1;Parent=gene-AD39_RS07190;Dbxref=GenBank:WP_001297598.1;Name=WP_001297598.1;Ontology_term=GO:0006744,GO:0042802;gbkey=CDS;gene=ubiK;go_function=identical protein binding|0042802||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417514.4;locus_tag=AD39_RS07190;product=ubiquinone biosynthesis accessory factor UbiK;protein_id=WP_001297598.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 459920 460471 . + . ID=gene-AD39_RS07185;Name=ygiL;gbkey=Gene;gene=ygiL;gene_biotype=protein_coding;locus_tag=AD39_RS07185;old_locus_tag=AD39_3576 NZ_JJLH01000045.1 Protein Homology CDS 459920 460471 . + 0 ID=cds-WP_001272146.1;Parent=gene-AD39_RS07185;Dbxref=GenBank:WP_001272146.1;Name=WP_001272146.1;gbkey=CDS;gene=ygiL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417515.1;locus_tag=AD39_RS07185;product=fimbrial-like protein;protein_id=WP_001272146.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 460531 463035 . + . ID=gene-AD39_RS07180;Name=AD39_RS07180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS07180;old_locus_tag=AD39_3577 NZ_JJLH01000045.1 Protein Homology CDS 460531 463035 . + 0 ID=cds-WP_023155589.1;Parent=gene-AD39_RS07180;Dbxref=GenBank:WP_023155589.1;Name=WP_023155589.1;Ontology_term=GO:0009297,GO:0015473,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001480735.1;locus_tag=AD39_RS07180;product=fimbria/pilus outer membrane usher protein;protein_id=WP_023155589.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 463051 463800 . + . ID=gene-AD39_RS07175;Name=yqiH;gbkey=Gene;gene=yqiH;gene_biotype=protein_coding;locus_tag=AD39_RS07175;old_locus_tag=AD39_3578 NZ_JJLH01000045.1 Protein Homology CDS 463051 463800 . + 0 ID=cds-WP_001269825.1;Parent=gene-AD39_RS07175;Dbxref=GenBank:WP_001269825.1;Name=WP_001269825.1;Ontology_term=GO:0043711,GO:0061077,GO:0030288;gbkey=CDS;gene=yqiH;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=pilus organization|0043711||IEA,chaperone-mediated protein folding|0061077||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417519.4;locus_tag=AD39_RS07175;product=fimbrial biogenesis chaperone;protein_id=WP_001269825.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 463802 464866 . + . ID=gene-AD39_RS07170;Name=yqiI;gbkey=Gene;gene=yqiI;gene_biotype=protein_coding;locus_tag=AD39_RS07170;old_locus_tag=AD39_3579 NZ_JJLH01000045.1 Protein Homology CDS 463802 464866 . + 0 ID=cds-WP_001269793.1;Parent=gene-AD39_RS07170;Dbxref=GenBank:WP_001269793.1;Name=WP_001269793.1;gbkey=CDS;gene=yqiI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417520.1;locus_tag=AD39_RS07170;product=fimbrial protein;protein_id=WP_001269793.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 464909 465109 . - . ID=gene-AD39_RS07165;Name=glgS;gbkey=Gene;gene=glgS;gene_biotype=protein_coding;locus_tag=AD39_RS07165;old_locus_tag=AD39_3580 NZ_JJLH01000045.1 Protein Homology CDS 464909 465109 . - 0 ID=cds-WP_000350095.1;Parent=gene-AD39_RS07165;Dbxref=GenBank:WP_000350095.1;Name=WP_000350095.1;gbkey=CDS;gene=glgS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417521.1;locus_tag=AD39_RS07165;product=cell surface composition regulator GlgS;protein_id=WP_000350095.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 465378 466007 . + . ID=gene-AD39_RS07160;Name=yqiJ;gbkey=Gene;gene=yqiJ;gene_biotype=protein_coding;locus_tag=AD39_RS07160;old_locus_tag=AD39_3581 NZ_JJLH01000045.1 Protein Homology CDS 465378 466007 . + 0 ID=cds-WP_000599947.1;Parent=gene-AD39_RS07160;Dbxref=GenBank:WP_000599947.1;Name=WP_000599947.1;gbkey=CDS;gene=yqiJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417522.1;locus_tag=AD39_RS07160;product=OB-fold-containig protein;protein_id=WP_000599947.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 466034 467695 . + . ID=gene-AD39_RS07155;Name=yqiK;gbkey=Gene;gene=yqiK;gene_biotype=protein_coding;locus_tag=AD39_RS07155;old_locus_tag=AD39_3582 NZ_JJLH01000045.1 Protein Homology CDS 466034 467695 . + 0 ID=cds-WP_000341060.1;Parent=gene-AD39_RS07155;Dbxref=GenBank:WP_000341060.1;Name=WP_000341060.1;Ontology_term=GO:0016020,GO:0016600;gbkey=CDS;gene=yqiK;go_component=membrane|0016020||IEA,flotillin complex|0016600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417523.1;locus_tag=AD39_RS07155;product=flotillin family protein;protein_id=WP_000341060.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 467934 467993 . + . ID=gene-AD39_RS29220;Name=AD39_RS29220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29220 NZ_JJLH01000045.1 Protein Homology CDS 467934 467993 . + 0 ID=cds-WP_001387081.1;Parent=gene-AD39_RS29220;Dbxref=GenBank:WP_001387081.1;Name=WP_001387081.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791256.1;locus_tag=AD39_RS29220;product=type I toxin-antitoxin system Ibs family toxin;protein_id=WP_001387081.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 468310 468369 . + . ID=gene-AD39_RS29225;Name=ibsE;gbkey=Gene;gene=ibsE;gene_biotype=protein_coding;locus_tag=AD39_RS29225 NZ_JJLH01000045.1 Protein Homology CDS 468310 468369 . + 0 ID=cds-WP_001387082.1;Parent=gene-AD39_RS29225;Dbxref=GenBank:WP_001387082.1;Name=WP_001387082.1;gbkey=CDS;gene=ibsE;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791257.1;locus_tag=AD39_RS29225;product=type I toxin-antitoxin system Ibs family toxin;protein_id=WP_001387082.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 468489 469922 . - . ID=gene-AD39_RS07150;Name=hldE;gbkey=Gene;gene=hldE;gene_biotype=protein_coding;locus_tag=AD39_RS07150;old_locus_tag=AD39_3583 NZ_JJLH01000045.1 Protein Homology CDS 468489 469922 . - 0 ID=cds-WP_001472299.1;Parent=gene-AD39_RS07150;Dbxref=GenBank:WP_001472299.1;Name=WP_001472299.1;Ontology_term=GO:0005975,GO:0009058,GO:0016779;gbkey=CDS;gene=hldE;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=carbohydrate metabolic process|0005975||IEA,biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417524.1;locus_tag=AD39_RS07150;product=bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE;protein_id=WP_001472299.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 469970 472810 . - . ID=gene-AD39_RS07145;Name=glnE;gbkey=Gene;gene=glnE;gene_biotype=protein_coding;locus_tag=AD39_RS07145;old_locus_tag=AD39_3584 NZ_JJLH01000045.1 Protein Homology CDS 469970 472810 . - 0 ID=cds-WP_032254950.1;Parent=gene-AD39_RS07145;Dbxref=GenBank:WP_032254950.1;Name=WP_032254950.1;Ontology_term=GO:0008882;gbkey=CDS;gene=glnE;go_function=[glutamate-ammonia-ligase] adenylyltransferase activity|0008882||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417525.1;locus_tag=AD39_RS07145;product=bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase;protein_id=WP_032254950.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 472833 474134 . - . ID=gene-AD39_RS07140;Name=ygiF;gbkey=Gene;gene=ygiF;gene_biotype=protein_coding;locus_tag=AD39_RS07140;old_locus_tag=AD39_3585 NZ_JJLH01000045.1 Protein Homology CDS 472833 474134 . - 0 ID=cds-WP_000046264.1;Parent=gene-AD39_RS07140;Dbxref=GenBank:WP_000046264.1;Name=WP_000046264.1;gbkey=CDS;gene=ygiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311964.1;locus_tag=AD39_RS07140;product=inorganic triphosphatase;protein_id=WP_000046264.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 474376 474996 . + . ID=gene-AD39_RS07135;Name=ygiM;gbkey=Gene;gene=ygiM;gene_biotype=protein_coding;locus_tag=AD39_RS07135;old_locus_tag=AD39_3587 NZ_JJLH01000045.1 Protein Homology CDS 474376 474996 . + 0 ID=cds-WP_001125332.1;Parent=gene-AD39_RS07135;Dbxref=GenBank:WP_001125332.1;Name=WP_001125332.1;gbkey=CDS;gene=ygiM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311965.1;locus_tag=AD39_RS07135;product=TIGR04211 family SH3 domain-containing protein;protein_id=WP_001125332.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 475060 476298 . + . ID=gene-AD39_RS07130;Name=cca;gbkey=Gene;gene=cca;gene_biotype=protein_coding;locus_tag=AD39_RS07130;old_locus_tag=AD39_3588 NZ_JJLH01000045.1 Protein Homology CDS 475060 476298 . + 0 ID=cds-WP_000708500.1;Parent=gene-AD39_RS07130;Dbxref=GenBank:WP_000708500.1;Name=WP_000708500.1;gbkey=CDS;gene=cca;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311966.1;locus_tag=AD39_RS07130;product=fused tRNA nucleotidyltransferase/2'%2C3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca;protein_id=WP_000708500.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 476461 477282 . - . ID=gene-AD39_RS07125;Name=bacA;gbkey=Gene;gene=bacA;gene_biotype=protein_coding;locus_tag=AD39_RS07125;old_locus_tag=AD39_3589 NZ_JJLH01000045.1 Protein Homology CDS 476461 477282 . - 0 ID=cds-WP_001513260.1;Parent=gene-AD39_RS07125;Dbxref=GenBank:WP_001513260.1;Name=WP_001513260.1;Ontology_term=GO:0016311,GO:0050380,GO:0016020;gbkey=CDS;gene=bacA;go_component=membrane|0016020||IEA;go_function=undecaprenyl-diphosphatase activity|0050380||IEA;go_process=dephosphorylation|0016311||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708867.2;locus_tag=AD39_RS07125;product=undecaprenyl-diphosphate phosphatase;protein_id=WP_001513260.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 477372 477740 . - . ID=gene-AD39_RS07120;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=AD39_RS07120;old_locus_tag=AD39_3590 NZ_JJLH01000045.1 Protein Homology CDS 477372 477740 . - 0 ID=cds-WP_001295541.1;Parent=gene-AD39_RS07120;Dbxref=GenBank:WP_001295541.1;Name=WP_001295541.1;Ontology_term=GO:0006760,GO:0004150;gbkey=CDS;gene=folB;go_function=dihydroneopterin aldolase activity|0004150||IEA;go_process=folic acid-containing compound metabolic process|0006760||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708868.2;locus_tag=AD39_RS07120;product=bifunctional dihydroneopterin aldolase/7%2C8-dihydroneopterin epimerase;protein_id=WP_001295541.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 477845 478462 . + . ID=gene-AD39_RS07115;Name=plsY;gbkey=Gene;gene=plsY;gene_biotype=protein_coding;locus_tag=AD39_RS07115;old_locus_tag=AD39_3591 NZ_JJLH01000045.1 Protein Homology CDS 477845 478462 . + 0 ID=cds-WP_001272796.1;Parent=gene-AD39_RS07115;Dbxref=GenBank:WP_001272796.1;Name=WP_001272796.1;Ontology_term=GO:0006654,GO:0008374,GO:0005886;gbkey=CDS;gene=plsY;go_component=plasma membrane|0005886||IEA;go_function=O-acyltransferase activity|0008374||IEA;go_process=phosphatidic acid biosynthetic process|0006654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311969.1;locus_tag=AD39_RS07115;product=glycerol-3-phosphate 1-O-acyltransferase PlsY;protein_id=WP_001272796.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 478475 479407 . - . ID=gene-AD39_RS07110;Name=ttdR;gbkey=Gene;gene=ttdR;gene_biotype=protein_coding;locus_tag=AD39_RS07110;old_locus_tag=AD39_3592 NZ_JJLH01000045.1 Protein Homology CDS 478475 479407 . - 0 ID=cds-WP_000935206.1;Parent=gene-AD39_RS07110;Dbxref=GenBank:WP_000935206.1;Name=WP_000935206.1;Ontology_term=GO:0045893,GO:0003700,GO:0043565;gbkey=CDS;gene=ttdR;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=positive regulation of DNA-templated transcription|0045893||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417532.1;locus_tag=AD39_RS07110;product=L-tartrate utilization transcriptional activator TtdR;protein_id=WP_000935206.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 479614 480525 . + . ID=gene-AD39_RS07105;Name=ttdA;gbkey=Gene;gene=ttdA;gene_biotype=protein_coding;locus_tag=AD39_RS07105;old_locus_tag=AD39_3594 NZ_JJLH01000045.1 Protein Homology CDS 479614 480525 . + 0 ID=cds-WP_000986797.1;Parent=gene-AD39_RS07105;Dbxref=GenBank:WP_000986797.1;Name=WP_000986797.1;Ontology_term=GO:0008730;gbkey=CDS;gene=ttdA;go_function=L(+)-tartrate dehydratase activity|0008730||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417533.1;locus_tag=AD39_RS07105;product=L(+)-tartrate dehydratase subunit alpha;protein_id=WP_000986797.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 480522 481127 . + . ID=gene-AD39_RS07100;Name=ttdB;gbkey=Gene;gene=ttdB;gene_biotype=protein_coding;locus_tag=AD39_RS07100;old_locus_tag=AD39_3595 NZ_JJLH01000045.1 Protein Homology CDS 480522 481127 . + 0 ID=cds-WP_000722957.1;Parent=gene-AD39_RS07100;Dbxref=GenBank:WP_000722957.1;Name=WP_000722957.1;Ontology_term=GO:0016836;gbkey=CDS;gene=ttdB;go_function=hydro-lyase activity|0016836||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417534.1;locus_tag=AD39_RS07100;product=L(+)-tartrate dehydratase subunit beta;protein_id=WP_000722957.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 481175 482638 . + . ID=gene-AD39_RS07095;Name=ttdT;gbkey=Gene;gene=ttdT;gene_biotype=protein_coding;locus_tag=AD39_RS07095;old_locus_tag=AD39_3596 NZ_JJLH01000045.1 Protein Homology CDS 481175 482638 . + 0 ID=cds-WP_000804974.1;Parent=gene-AD39_RS07095;Dbxref=GenBank:WP_000804974.1;Name=WP_000804974.1;gbkey=CDS;gene=ttdT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417535.1;locus_tag=AD39_RS07095;product=L-tartrate/succinate antiporter;protein_id=WP_000804974.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 482681 483694 . - . ID=gene-AD39_RS07090;Name=tsaD;gbkey=Gene;gene=tsaD;gene_biotype=protein_coding;locus_tag=AD39_RS07090;old_locus_tag=AD39_3597 NZ_JJLH01000045.1 Protein Homology CDS 482681 483694 . - 0 ID=cds-WP_032287619.1;Parent=gene-AD39_RS07090;Dbxref=GenBank:WP_032287619.1;Name=WP_032287619.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaD;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001264383.1;locus_tag=AD39_RS07090;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD;protein_id=WP_032287619.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 483932 484147 . + . ID=gene-AD39_RS07085;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=AD39_RS07085;old_locus_tag=AD39_3598 NZ_JJLH01000045.1 Protein Homology CDS 483932 484147 . + 0 ID=cds-WP_001144069.1;Parent=gene-AD39_RS07085;Dbxref=GenBank:WP_001144069.1;Name=WP_001144069.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsU;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311975.1;locus_tag=AD39_RS07085;product=30S ribosomal protein S21;protein_id=WP_001144069.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 484258 486003 . + . ID=gene-AD39_RS07080;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=AD39_RS07080;old_locus_tag=AD39_3599 NZ_JJLH01000045.1 Protein Homology CDS 484258 486003 . + 0 ID=cds-WP_024245204.1;Parent=gene-AD39_RS07080;Dbxref=GenBank:WP_024245204.1;Name=WP_024245204.1;Ontology_term=GO:0006269,GO:0003899;gbkey=CDS;gene=dnaG;go_function=DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA replication%2C synthesis of primer|0006269||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311976.1;locus_tag=AD39_RS07080;product=DNA primase;protein_id=WP_024245204.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 486198 488039 . + . ID=gene-AD39_RS07075;Name=rpoD;gbkey=Gene;gene=rpoD;gene_biotype=protein_coding;locus_tag=AD39_RS07075;old_locus_tag=AD39_3601 NZ_JJLH01000045.1 Protein Homology CDS 486198 488039 . + 0 ID=cds-WP_001713591.1;Parent=gene-AD39_RS07075;Dbxref=GenBank:WP_001713591.1;Name=WP_001713591.1;Ontology_term=GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoD;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311977.1;locus_tag=AD39_RS07075;product=RNA polymerase sigma factor RpoD;protein_id=WP_001713591.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 488118 488624 . - . ID=gene-AD39_RS07070;Name=mug;gbkey=Gene;gene=mug;gene_biotype=protein_coding;locus_tag=AD39_RS07070;old_locus_tag=AD39_3602 NZ_JJLH01000045.1 Protein Homology CDS 488118 488624 . - 0 ID=cds-WP_000228937.1;Parent=gene-AD39_RS07070;Dbxref=GenBank:WP_000228937.1;Name=WP_000228937.1;Ontology_term=GO:0006285,GO:0000700;gbkey=CDS;gene=mug;go_function=mismatch base pair DNA N-glycosylase activity|0000700||IEA;go_process=base-excision repair%2C AP site formation|0006285||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417540.1;locus_tag=AD39_RS07070;product=G/U mismatch-specific DNA glycosylase;protein_id=WP_000228937.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 488749 488824 . + . ID=gene-AD39_RS07065;Name=AD39_RS07065;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS07065;old_locus_tag=AD39_3603 NZ_JJLH01000045.1 tRNAscan-SE tRNA 488749 488824 . + . ID=rna-AD39_RS07065;Parent=gene-AD39_RS07065;anticodon=(pos:488782..488784);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS07065;product=tRNA-Ile NZ_JJLH01000045.1 tRNAscan-SE exon 488749 488824 . + . ID=exon-AD39_RS07065-1;Parent=rna-AD39_RS07065;anticodon=(pos:488782..488784);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS07065;product=tRNA-Ile NZ_JJLH01000045.1 RefSeq gene 488878 489642 . - . ID=gene-AD39_RS07060;Name=nfeF;gbkey=Gene;gene=nfeF;gene_biotype=protein_coding;gene_synonym=yqjH;locus_tag=AD39_RS07060;old_locus_tag=AD39_3604 NZ_JJLH01000045.1 Protein Homology CDS 488878 489642 . - 0 ID=cds-WP_001065895.1;Parent=gene-AD39_RS07060;Dbxref=GenBank:WP_001065895.1;Name=WP_001065895.1;gbkey=CDS;gene=nfeF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311979.1;locus_tag=AD39_RS07060;product=NADPH-dependent ferric chelate reductase NfeF;protein_id=WP_001065895.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 489919 490542 . + . ID=gene-AD39_RS07055;Name=nfeR;gbkey=Gene;gene=nfeR;gene_biotype=protein_coding;gene_synonym=yqjI;locus_tag=AD39_RS07055;old_locus_tag=AD39_3605 NZ_JJLH01000045.1 Protein Homology CDS 489919 490542 . + 0 ID=cds-WP_000018000.1;Parent=gene-AD39_RS07055;Dbxref=GenBank:WP_000018000.1;Name=WP_000018000.1;gbkey=CDS;gene=nfeR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417542.1;locus_tag=AD39_RS07055;product=DNA-binding transcriptional regulator NfeR;protein_id=WP_000018000.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 490696 492216 . - . ID=gene-AD39_RS07050;Name=aer;gbkey=Gene;gene=aer;gene_biotype=protein_coding;locus_tag=AD39_RS07050;old_locus_tag=AD39_3606 NZ_JJLH01000045.1 Protein Homology CDS 490696 492216 . - 0 ID=cds-WP_000094682.1;Parent=gene-AD39_RS07050;Dbxref=GenBank:WP_000094682.1;Name=WP_000094682.1;gbkey=CDS;gene=aer;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311981.2;locus_tag=AD39_RS07050;product=aerotaxis sensor receptor Aer;protein_id=WP_000094682.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 492634 494013 . + . ID=gene-AD39_RS07045;Name=ygjG;gbkey=Gene;gene=ygjG;gene_biotype=protein_coding;locus_tag=AD39_RS07045;old_locus_tag=AD39_3608 NZ_JJLH01000045.1 Protein Homology CDS 492634 494013 . + 0 ID=cds-WP_001297164.1;Parent=gene-AD39_RS07045;Dbxref=GenBank:WP_001297164.1;Name=WP_001297164.1;Ontology_term=GO:0009447,GO:0030170,GO:0033094;gbkey=CDS;gene=ygjG;go_function=pyridoxal phosphate binding|0030170||IEA,putrescine--2-oxoglutarate transaminase activity|0033094||IEA;go_process=putrescine catabolic process|0009447||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417544.5;locus_tag=AD39_RS07045;product=putrescine aminotransferase;protein_id=WP_001297164.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 494055 494387 . - . ID=gene-AD39_RS07040;Name=ygjH;gbkey=Gene;gene=ygjH;gene_biotype=protein_coding;locus_tag=AD39_RS07040;old_locus_tag=AD39_3609 NZ_JJLH01000045.1 Protein Homology CDS 494055 494387 . - 0 ID=cds-WP_000450589.1;Parent=gene-AD39_RS07040;Dbxref=GenBank:WP_000450589.1;Name=WP_000450589.1;gbkey=CDS;gene=ygjH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311983.1;locus_tag=AD39_RS07040;product=tRNA-binding protein;protein_id=WP_000450589.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 494606 495589 . + . ID=gene-AD39_RS07035;Name=ebgR;gbkey=Gene;gene=ebgR;gene_biotype=protein_coding;locus_tag=AD39_RS07035;old_locus_tag=AD39_3610 NZ_JJLH01000045.1 Protein Homology CDS 494606 495589 . + 0 ID=cds-WP_000212470.1;Parent=gene-AD39_RS07035;Dbxref=GenBank:WP_000212470.1;Name=WP_000212470.1;gbkey=CDS;gene=ebgR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417546.1;locus_tag=AD39_RS07035;product=transcriptional regulator EbgR;protein_id=WP_000212470.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 495773 498865 . + . ID=gene-AD39_RS07030;Name=ebgA;gbkey=Gene;gene=ebgA;gene_biotype=protein_coding;locus_tag=AD39_RS07030;old_locus_tag=AD39_3611 NZ_JJLH01000045.1 Protein Homology CDS 495773 498865 . + 0 ID=cds-WP_001082867.1;Parent=gene-AD39_RS07030;Dbxref=GenBank:WP_001082867.1;Name=WP_001082867.1;Ontology_term=GO:0004565;gbkey=CDS;gene=ebgA;go_function=beta-galactosidase activity|0004565||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311985.2;locus_tag=AD39_RS07030;product=beta-galactosidase subunit alpha;protein_id=WP_001082867.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 498862 499311 . + . ID=gene-AD39_RS07025;Name=ebgC;gbkey=Gene;gene=ebgC;gene_biotype=protein_coding;locus_tag=AD39_RS07025;old_locus_tag=AD39_3612 NZ_JJLH01000045.1 Protein Homology CDS 498862 499311 . + 0 ID=cds-WP_001219943.1;Parent=gene-AD39_RS07025;Dbxref=GenBank:WP_001219943.1;Name=WP_001219943.1;gbkey=CDS;gene=ebgC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708883.1;locus_tag=AD39_RS07025;product=beta-galactosidase subunit beta;protein_id=WP_001219943.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 499374 500807 . + . ID=gene-AD39_RS07020;Name=ygjI;gbkey=Gene;gene=ygjI;gene_biotype=protein_coding;locus_tag=AD39_RS07020;old_locus_tag=AD39_3613 NZ_JJLH01000045.1 Protein Homology CDS 499374 500807 . + 0 ID=cds-WP_001388473.1;Parent=gene-AD39_RS07020;Dbxref=GenBank:WP_001388473.1;Name=WP_001388473.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=ygjI;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311987.1;locus_tag=AD39_RS07020;product=amino acid permease;protein_id=WP_001388473.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 500941 502011 . + . ID=gene-AD39_RS07015;Name=ygjJ;gbkey=Gene;gene=ygjJ;gene_biotype=protein_coding;locus_tag=AD39_RS07015;old_locus_tag=AD39_3614 NZ_JJLH01000045.1 Protein Homology CDS 500941 502011 . + 0 ID=cds-WP_000767652.1;Parent=gene-AD39_RS07015;Dbxref=GenBank:WP_000767652.1;Name=WP_000767652.1;gbkey=CDS;gene=ygjJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417550.1;locus_tag=AD39_RS07015;product=protein YgjJ;protein_id=WP_000767652.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 502028 504379 . + . ID=gene-AD39_RS07010;Name=ygjK;gbkey=Gene;gene=ygjK;gene_biotype=protein_coding;locus_tag=AD39_RS07010;old_locus_tag=AD39_3615 NZ_JJLH01000045.1 Protein Homology CDS 502028 504379 . + 0 ID=cds-WP_032254904.1;Parent=gene-AD39_RS07010;Dbxref=GenBank:WP_032254904.1;Name=WP_032254904.1;Ontology_term=GO:0005991,GO:0004555;gbkey=CDS;gene=ygjK;go_function=alpha%2Calpha-trehalase activity|0004555||IEA;go_process=trehalose metabolic process|0005991||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417551.1;locus_tag=AD39_RS07010;product=alpha-glucosidase;protein_id=WP_032254904.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 504705 506723 . + . ID=gene-AD39_RS07005;Name=fadH;gbkey=Gene;gene=fadH;gene_biotype=protein_coding;locus_tag=AD39_RS07005;old_locus_tag=AD39_3616 NZ_JJLH01000045.1 Protein Homology CDS 504705 506723 . + 0 ID=cds-WP_032226786.1;Parent=gene-AD39_RS07005;Dbxref=GenBank:WP_032226786.1;Name=WP_032226786.1;gbkey=CDS;gene=fadH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417552.1;locus_tag=AD39_RS07005;product=NADPH-dependent 2%2C4-dienoyl-CoA reductase;protein_id=WP_032226786.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 506768 507184 . - . ID=gene-AD39_RS07000;Name=higA;gbkey=Gene;gene=higA;gene_biotype=protein_coding;locus_tag=AD39_RS07000;old_locus_tag=AD39_3617 NZ_JJLH01000045.1 Protein Homology CDS 506768 507184 . - 0 ID=cds-WP_000561123.1;Parent=gene-AD39_RS07000;Dbxref=GenBank:WP_000561123.1;Name=WP_000561123.1;gbkey=CDS;gene=higA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417553.1;locus_tag=AD39_RS07000;product=type II toxin-antitoxin system antitoxin HigA;protein_id=WP_000561123.1;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 507181 507258 . - . ID=gene-AD39_RS29230;Name=AD39_RS29230;end_range=507258,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29230;partial=true;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 507181 507258 . - 0 ID=cds-AD39_RS29230;Parent=gene-AD39_RS29230;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=507258,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311992.1;locus_tag=AD39_RS29230;partial=true;product=type II toxin-antitoxin system toxin HigB;pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 507455 508591 . - . ID=gene-AD39_RS06990;Name=rlmG;gbkey=Gene;gene=rlmG;gene_biotype=protein_coding;locus_tag=AD39_RS06990;old_locus_tag=AD39_3619 NZ_JJLH01000045.1 Protein Homology CDS 507455 508591 . - 0 ID=cds-WP_032287620.1;Parent=gene-AD39_RS06990;Dbxref=GenBank:WP_032287620.1;Name=WP_032287620.1;Ontology_term=GO:0031167,GO:0003676,GO:0008990;gbkey=CDS;gene=rlmG;go_function=nucleic acid binding|0003676||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417555.4;locus_tag=AD39_RS06990;product=23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG;protein_id=WP_032287620.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 508676 509179 . + . ID=gene-AD39_RS06985;Name=ygjP;gbkey=Gene;gene=ygjP;gene_biotype=protein_coding;locus_tag=AD39_RS06985;old_locus_tag=AD39_3620 NZ_JJLH01000045.1 Protein Homology CDS 508676 509179 . + 0 ID=cds-WP_001297151.1;Parent=gene-AD39_RS06985;Dbxref=GenBank:WP_001297151.1;Name=WP_001297151.1;Ontology_term=GO:0008270,GO:0016787,GO:0046872;gbkey=CDS;gene=ygjP;go_function=zinc ion binding|0008270||IEA,hydrolase activity|0016787||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311994.2;locus_tag=AD39_RS06985;product=M48 metallopeptidase family protein;protein_id=WP_001297151.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 509256 509939 . + . ID=gene-AD39_RS06980;Name=ygjQ;gbkey=Gene;gene=ygjQ;gene_biotype=protein_coding;locus_tag=AD39_RS06980;old_locus_tag=AD39_3621 NZ_JJLH01000045.1 Protein Homology CDS 509256 509939 . + 0 ID=cds-WP_001183042.1;Parent=gene-AD39_RS06980;Dbxref=GenBank:WP_001183042.1;Name=WP_001183042.1;Ontology_term=GO:0016020;gbkey=CDS;gene=ygjQ;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001183047.1;locus_tag=AD39_RS06980;product=SanA/YdcF family protein;protein_id=WP_001183042.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 510018 511004 . + . ID=gene-AD39_RS06975;Name=ygjR;gbkey=Gene;gene=ygjR;gene_biotype=protein_coding;locus_tag=AD39_RS06975;old_locus_tag=AD39_3622 NZ_JJLH01000045.1 Protein Homology CDS 510018 511004 . + 0 ID=cds-WP_001297165.1;Parent=gene-AD39_RS06975;Dbxref=GenBank:WP_001297165.1;Name=WP_001297165.1;Ontology_term=GO:0000166,GO:0003824;gbkey=CDS;gene=ygjR;go_function=nucleotide binding|0000166||IEA,catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417558.2;locus_tag=AD39_RS06975;product=Gfo/Idh/MocA family protein;protein_id=WP_001297165.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 511287 512252 . + . ID=gene-AD39_RS06970;Name=alx;gbkey=Gene;gene=alx;gene_biotype=protein_coding;locus_tag=AD39_RS06970;old_locus_tag=AD39_3623 NZ_JJLH01000045.1 Protein Homology CDS 511287 512252 . + 0 ID=cds-WP_001098806.1;Parent=gene-AD39_RS06970;Dbxref=GenBank:WP_001098806.1;Name=WP_001098806.1;gbkey=CDS;gene=alx;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026201.1;locus_tag=AD39_RS06970;product=TerC family membrane protein Alx;protein_id=WP_001098806.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 512651 513895 . + . ID=gene-AD39_RS06965;Name=sstT;gbkey=Gene;gene=sstT;gene_biotype=protein_coding;locus_tag=AD39_RS06965;old_locus_tag=AD39_3624 NZ_JJLH01000045.1 Protein Homology CDS 512651 513895 . + 0 ID=cds-WP_000211655.1;Parent=gene-AD39_RS06965;Dbxref=GenBank:WP_000211655.1;Name=WP_000211655.1;Ontology_term=GO:0015826,GO:0032329,GO:0015293,GO:0016020;gbkey=CDS;gene=sstT;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=threonine transport|0015826||IEA,serine transport|0032329||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311998.1;locus_tag=AD39_RS06965;product=serine/threonine transporter SstT;protein_id=WP_000211655.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 513900 514451 . - . ID=gene-AD39_RS06960;Name=ygjV;gbkey=Gene;gene=ygjV;gene_biotype=protein_coding;locus_tag=AD39_RS06960;old_locus_tag=AD39_3625 NZ_JJLH01000045.1 Protein Homology CDS 513900 514451 . - 0 ID=cds-WP_001513270.1;Parent=gene-AD39_RS06960;Dbxref=GenBank:WP_001513270.1;Name=WP_001513270.1;gbkey=CDS;gene=ygjV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311999.1;locus_tag=AD39_RS06960;product=YgjV family protein;protein_id=WP_001513270.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 514534 516021 . - . ID=gene-AD39_RS06955;Name=uxaA;gbkey=Gene;gene=uxaA;gene_biotype=protein_coding;locus_tag=AD39_RS06955;old_locus_tag=AD39_3626 NZ_JJLH01000045.1 Protein Homology CDS 514534 516021 . - 0 ID=cds-WP_001474651.1;Parent=gene-AD39_RS06955;Dbxref=GenBank:WP_001474651.1;Name=WP_001474651.1;gbkey=CDS;gene=uxaA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001199350.1;locus_tag=AD39_RS06955;product=altronate dehydratase;protein_id=WP_001474651.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 516036 517448 . - . ID=gene-AD39_RS06950;Name=uxaC;gbkey=Gene;gene=uxaC;gene_biotype=protein_coding;locus_tag=AD39_RS06950;old_locus_tag=AD39_3627 NZ_JJLH01000045.1 Protein Homology CDS 516036 517448 . - 0 ID=cds-WP_000187441.1;Parent=gene-AD39_RS06950;Dbxref=GenBank:WP_000187441.1;Name=WP_000187441.1;Ontology_term=GO:0006064,GO:0008880;gbkey=CDS;gene=uxaC;go_function=glucuronate isomerase activity|0008880||IEA;go_process=glucuronate catabolic process|0006064||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019077755.1;locus_tag=AD39_RS06950;product=glucuronate isomerase;protein_id=WP_000187441.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 517931 519229 . + . ID=gene-AD39_RS06945;Name=exuT;gbkey=Gene;gene=exuT;gene_biotype=protein_coding;locus_tag=AD39_RS06945;old_locus_tag=AD39_3628 NZ_JJLH01000045.1 Protein Homology CDS 517931 519229 . + 0 ID=cds-WP_001226463.1;Parent=gene-AD39_RS06945;Dbxref=GenBank:WP_001226463.1;Name=WP_001226463.1;gbkey=CDS;gene=exuT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708898.2;locus_tag=AD39_RS06945;product=hexuronate transporter ExuT;protein_id=WP_001226463.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 519317 520405 . - . ID=gene-AD39_RS06940;Name=AD39_RS06940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS06940;old_locus_tag=AD39_3629 NZ_JJLH01000045.1 Protein Homology CDS 519317 520405 . - 0 ID=cds-WP_001245988.1;Parent=gene-AD39_RS06940;Dbxref=GenBank:WP_001245988.1;Name=WP_001245988.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001352530.1;locus_tag=AD39_RS06940;product=CfaE/CblD family pilus tip adhesin;protein_id=WP_001245988.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 520402 523086 . - . ID=gene-AD39_RS06935;Name=AD39_RS06935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS06935;old_locus_tag=AD39_3630 NZ_JJLH01000045.1 Protein Homology CDS 520402 523086 . - 0 ID=cds-WP_032286117.1;Parent=gene-AD39_RS06935;Dbxref=GenBank:WP_032286117.1;Name=WP_032286117.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001666746.1;locus_tag=AD39_RS06935;product=TcfC E-set like domain-containing protein;protein_id=WP_032286117.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 523178 523678 . - . ID=gene-AD39_RS06930;Name=AD39_RS06930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS06930;old_locus_tag=AD39_3631 NZ_JJLH01000045.1 Protein Homology CDS 523178 523678 . - 0 ID=cds-WP_000755097.1;Parent=gene-AD39_RS06930;Dbxref=GenBank:WP_000755097.1;Name=WP_000755097.1;Ontology_term=GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000755097.1;locus_tag=AD39_RS06930;product=CS1 type fimbrial major subunit;protein_id=WP_000755097.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 523708 524424 . - . ID=gene-AD39_RS06925;Name=AD39_RS06925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS06925;old_locus_tag=AD39_3632 NZ_JJLH01000045.1 Protein Homology CDS 523708 524424 . - 0 ID=cds-WP_000225867.1;Parent=gene-AD39_RS06925;Dbxref=GenBank:WP_000225867.1;Name=WP_000225867.1;Ontology_term=GO:0071555,GO:0030288;gbkey=CDS;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000225871.1;locus_tag=AD39_RS06925;product=fimbria/pilus periplasmic chaperone;protein_id=WP_000225867.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 524720 525496 . + . ID=gene-AD39_RS06920;Name=exuR;gbkey=Gene;gene=exuR;gene_biotype=protein_coding;locus_tag=AD39_RS06920;old_locus_tag=AD39_3633 NZ_JJLH01000045.1 Protein Homology CDS 524720 525496 . + 0 ID=cds-WP_000406488.1;Parent=gene-AD39_RS06920;Dbxref=GenBank:WP_000406488.1;Name=WP_000406488.1;gbkey=CDS;gene=exuR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708902.1;locus_tag=AD39_RS06920;product=transcriptional regulator ExuR;protein_id=WP_000406488.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 525736 525819 . + . ID=gene-AD39_RS29815;Name=yqiM;gbkey=Gene;gene=yqiM;gene_biotype=protein_coding;locus_tag=AD39_RS29815 NZ_JJLH01000045.1 Protein Homology CDS 525736 525819 . + 0 ID=cds-WP_211180508.1;Parent=gene-AD39_RS29815;Dbxref=GenBank:WP_211180508.1;Name=WP_211180508.1;gbkey=CDS;gene=yqiM;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051200.1;locus_tag=AD39_RS29815;product=protein YqiM;protein_id=WP_211180508.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 525841 526503 . + . ID=gene-AD39_RS06915;Name=yqjA;gbkey=Gene;gene=yqjA;gene_biotype=protein_coding;locus_tag=AD39_RS06915;old_locus_tag=AD39_3634 NZ_JJLH01000045.1 Protein Homology CDS 525841 526503 . + 0 ID=cds-WP_000422149.1;Parent=gene-AD39_RS06915;Dbxref=GenBank:WP_000422149.1;Name=WP_000422149.1;gbkey=CDS;gene=yqjA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312004.1;locus_tag=AD39_RS06915;product=DedA family general envelope maintenance protein YqjA;protein_id=WP_000422149.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 526507 526890 . + . ID=gene-AD39_RS06910;Name=mzrA;gbkey=Gene;gene=mzrA;gene_biotype=protein_coding;locus_tag=AD39_RS06910;old_locus_tag=AD39_3635 NZ_JJLH01000045.1 Protein Homology CDS 526507 526890 . + 0 ID=cds-WP_001166768.1;Parent=gene-AD39_RS06910;Dbxref=GenBank:WP_001166768.1;Name=WP_001166768.1;gbkey=CDS;gene=mzrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417567.1;locus_tag=AD39_RS06910;product=EnvZ/OmpR regulon moderator MzrA;protein_id=WP_001166768.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 527037 527405 . + . ID=gene-AD39_RS06905;Name=yqjC;gbkey=Gene;gene=yqjC;gene_biotype=protein_coding;locus_tag=AD39_RS06905;old_locus_tag=AD39_3636 NZ_JJLH01000045.1 Protein Homology CDS 527037 527405 . + 0 ID=cds-WP_001297156.1;Parent=gene-AD39_RS06905;Dbxref=GenBank:WP_001297156.1;Name=WP_001297156.1;gbkey=CDS;gene=yqjC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417568.2;locus_tag=AD39_RS06905;product=DUF1090 family protein YqjC;protein_id=WP_001297156.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 527443 527748 . + . ID=gene-AD39_RS06900;Name=yqjD;gbkey=Gene;gene=yqjD;gene_biotype=protein_coding;locus_tag=AD39_RS06900;old_locus_tag=AD39_3637 NZ_JJLH01000045.1 Protein Homology CDS 527443 527748 . + 0 ID=cds-WP_000031415.1;Parent=gene-AD39_RS06900;Dbxref=GenBank:WP_000031415.1;Name=WP_000031415.1;Ontology_term=GO:0043022,GO:0005886;gbkey=CDS;gene=yqjD;go_component=plasma membrane|0005886||IEA;go_function=ribosome binding|0043022||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312007.1;locus_tag=AD39_RS06900;product=DUF883 family protein;protein_id=WP_000031415.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 527751 528155 . + . ID=gene-AD39_RS06895;Name=yqjE;gbkey=Gene;gene=yqjE;gene_biotype=protein_coding;locus_tag=AD39_RS06895;old_locus_tag=AD39_3638 NZ_JJLH01000045.1 Protein Homology CDS 527751 528155 . + 0 ID=cds-WP_000785722.1;Parent=gene-AD39_RS06895;Dbxref=GenBank:WP_000785722.1;Name=WP_000785722.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yqjE;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312008.1;locus_tag=AD39_RS06895;product=phage holin family protein;protein_id=WP_000785722.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 528145 528444 . + . ID=gene-AD39_RS06890;Name=yqjK;gbkey=Gene;gene=yqjK;gene_biotype=protein_coding;locus_tag=AD39_RS06890;old_locus_tag=AD39_3639 NZ_JJLH01000045.1 Protein Homology CDS 528145 528444 . + 0 ID=cds-WP_000096086.1;Parent=gene-AD39_RS06890;Dbxref=GenBank:WP_000096086.1;Name=WP_000096086.1;gbkey=CDS;gene=yqjK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312009.1;locus_tag=AD39_RS06890;product=YqjK-like family protein;protein_id=WP_000096086.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 528630 529022 . + . ID=gene-AD39_RS06885;Name=yqjF;gbkey=Gene;gene=yqjF;gene_biotype=protein_coding;locus_tag=AD39_RS06885;old_locus_tag=AD39_3640 NZ_JJLH01000045.1 Protein Homology CDS 528630 529022 . + 0 ID=cds-WP_000732233.1;Parent=gene-AD39_RS06885;Dbxref=GenBank:WP_000732233.1;Name=WP_000732233.1;Ontology_term=GO:0005886;gbkey=CDS;gene=yqjF;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008503138.1;locus_tag=AD39_RS06885;product=DoxX family protein;protein_id=WP_000732233.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 529092 530078 . + . ID=gene-AD39_RS06880;Name=yqjG;gbkey=Gene;gene=yqjG;gene_biotype=protein_coding;locus_tag=AD39_RS06880;old_locus_tag=AD39_3641 NZ_JJLH01000045.1 Protein Homology CDS 529092 530078 . + 0 ID=cds-WP_000531193.1;Parent=gene-AD39_RS06880;Dbxref=GenBank:WP_000531193.1;Name=WP_000531193.1;gbkey=CDS;gene=yqjG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708909.2;locus_tag=AD39_RS06880;product=glutathionyl-hydroquinone reductase YqjG;protein_id=WP_000531193.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 530371 530736 . + . ID=gene-AD39_RS06875;Name=yhaH;gbkey=Gene;gene=yhaH;gene_biotype=protein_coding;locus_tag=AD39_RS06875;old_locus_tag=AD39_3642 NZ_JJLH01000045.1 Protein Homology CDS 530371 530736 . + 0 ID=cds-WP_000384145.1;Parent=gene-AD39_RS06875;Dbxref=GenBank:WP_000384145.1;Name=WP_000384145.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yhaH;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312012.1;locus_tag=AD39_RS06875;product=DUF805 domain-containing protein;protein_id=WP_000384145.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 530978 531334 . + . ID=gene-AD39_RS06870;Name=AD39_RS06870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS06870;old_locus_tag=AD39_3643 NZ_JJLH01000045.1 Protein Homology CDS 530978 531334 . + 0 ID=cds-WP_001198780.1;Parent=gene-AD39_RS06870;Dbxref=GenBank:WP_001198780.1;Name=WP_001198780.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312013.1;locus_tag=AD39_RS06870;product=DUF805 domain-containing protein;protein_id=WP_001198780.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 531385 532281 . - . ID=gene-AD39_RS06865;Name=yhaJ;gbkey=Gene;gene=yhaJ;gene_biotype=protein_coding;locus_tag=AD39_RS06865;old_locus_tag=AD39_3644 NZ_JJLH01000045.1 Protein Homology CDS 531385 532281 . - 0 ID=cds-WP_001041010.1;Parent=gene-AD39_RS06865;Dbxref=GenBank:WP_001041010.1;Name=WP_001041010.1;gbkey=CDS;gene=yhaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312014.1;locus_tag=AD39_RS06865;product=DNA-binding transcriptional regulator YhaJ;protein_id=WP_001041010.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 532386 533087 . + . ID=gene-AD39_RS06860;Name=yhaK;gbkey=Gene;gene=yhaK;gene_biotype=protein_coding;locus_tag=AD39_RS06860;old_locus_tag=AD39_3645 NZ_JJLH01000045.1 Protein Homology CDS 532386 533087 . + 0 ID=cds-WP_000633577.1;Parent=gene-AD39_RS06860;Dbxref=GenBank:WP_000633577.1;Name=WP_000633577.1;gbkey=CDS;gene=yhaK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417577.1;locus_tag=AD39_RS06860;product=pirin family protein;protein_id=WP_000633577.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 533110 533274 . + . ID=gene-AD39_RS06855;Name=yhaL;gbkey=Gene;gene=yhaL;gene_biotype=protein_coding;locus_tag=AD39_RS06855;old_locus_tag=AD39_3646 NZ_JJLH01000045.1 Protein Homology CDS 533110 533274 . + 0 ID=cds-WP_001295544.1;Parent=gene-AD39_RS06855;Dbxref=GenBank:WP_001295544.1;Name=WP_001295544.1;gbkey=CDS;gene=yhaL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312016.2;locus_tag=AD39_RS06855;product=protein YhaL;protein_id=WP_001295544.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 533486 534796 . - . ID=gene-AD39_RS06850;Name=cyuA;gbkey=Gene;gene=cyuA;gene_biotype=protein_coding;locus_tag=AD39_RS06850;old_locus_tag=AD39_3647 NZ_JJLH01000045.1 Protein Homology CDS 533486 534796 . - 0 ID=cds-WP_000460519.1;Parent=gene-AD39_RS06850;Dbxref=GenBank:WP_000460519.1;Name=WP_000460519.1;gbkey=CDS;gene=cyuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312017.1;locus_tag=AD39_RS06850;product=cysteine desulfidase;protein_id=WP_000460519.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 534824 536155 . - . ID=gene-AD39_RS06845;Name=cyuP;gbkey=Gene;gene=cyuP;gene_biotype=protein_coding;locus_tag=AD39_RS06845;old_locus_tag=AD39_3648 NZ_JJLH01000045.1 Protein Homology CDS 534824 536155 . - 0 ID=cds-WP_000401598.1;Parent=gene-AD39_RS06845;Dbxref=GenBank:WP_000401598.1;Name=WP_000401598.1;gbkey=CDS;gene=cyuP;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026203.3;locus_tag=AD39_RS06845;product=amino acid permease;protein_id=WP_000401598.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 536430 537794 . - . ID=gene-AD39_RS06840;Name=tdcG;gbkey=Gene;gene=tdcG;gene_biotype=protein_coding;locus_tag=AD39_RS06840;old_locus_tag=AD39_3649 NZ_JJLH01000045.1 Protein Homology CDS 536430 537794 . - 0 ID=cds-WP_000622115.1;Parent=gene-AD39_RS06840;Dbxref=GenBank:WP_000622115.1;Name=WP_000622115.1;gbkey=CDS;gene=tdcG;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026204.1;locus_tag=AD39_RS06840;product=L-serine ammonia-lyase;protein_id=WP_000622115.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 537866 538255 . - . ID=gene-AD39_RS06835;Name=tdcF;gbkey=Gene;gene=tdcF;gene_biotype=protein_coding;locus_tag=AD39_RS06835;old_locus_tag=AD39_3650 NZ_JJLH01000045.1 Protein Homology CDS 537866 538255 . - 0 ID=cds-WP_000719990.1;Parent=gene-AD39_RS06835;Dbxref=GenBank:WP_000719990.1;Name=WP_000719990.1;gbkey=CDS;gene=tdcF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312020.2;locus_tag=AD39_RS06835;product=enamine/imine deaminase;protein_id=WP_000719990.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 538269 540563 . - . ID=gene-AD39_RS06830;Name=tdcE;gbkey=Gene;gene=tdcE;gene_biotype=protein_coding;locus_tag=AD39_RS06830;old_locus_tag=AD39_3651 NZ_JJLH01000045.1 Protein Homology CDS 538269 540563 . - 0 ID=cds-WP_001474655.1;Parent=gene-AD39_RS06830;Dbxref=GenBank:WP_001474655.1;Name=WP_001474655.1;gbkey=CDS;gene=tdcE;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026205.1;locus_tag=AD39_RS06830;product=2-ketobutyrate formate-lyase/pyruvate formate-lyase;protein_id=WP_001474655.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 540597 541805 . - . ID=gene-AD39_RS06825;Name=tdcD;gbkey=Gene;gene=tdcD;gene_biotype=protein_coding;locus_tag=AD39_RS06825;old_locus_tag=AD39_3652 NZ_JJLH01000045.1 Protein Homology CDS 540597 541805 . - 0 ID=cds-WP_001297162.1;Parent=gene-AD39_RS06825;Dbxref=GenBank:WP_001297162.1;Name=WP_001297162.1;Ontology_term=GO:0006082,GO:0016310,GO:0016301;gbkey=CDS;gene=tdcD;go_function=kinase activity|0016301||IEA;go_process=organic acid metabolic process|0006082||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417585.2;locus_tag=AD39_RS06825;product=propionate kinase;protein_id=WP_001297162.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 541831 543162 . - . ID=gene-AD39_RS06820;Name=tdcC;gbkey=Gene;gene=tdcC;gene_biotype=protein_coding;locus_tag=AD39_RS06820;old_locus_tag=AD39_3653 NZ_JJLH01000045.1 Protein Homology CDS 541831 543162 . - 0 ID=cds-WP_000107720.1;Parent=gene-AD39_RS06820;Dbxref=GenBank:WP_000107720.1;Name=WP_000107720.1;gbkey=CDS;gene=tdcC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312023.1;locus_tag=AD39_RS06820;product=threonine/serine transporter TdcC;protein_id=WP_000107720.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 543184 544173 . - . ID=gene-AD39_RS06815;Name=tdcB;gbkey=Gene;gene=tdcB;gene_biotype=protein_coding;locus_tag=AD39_RS06815;old_locus_tag=AD39_3654 NZ_JJLH01000045.1 Protein Homology CDS 543184 544173 . - 0 ID=cds-WP_000548347.1;Parent=gene-AD39_RS06815;Dbxref=GenBank:WP_000548347.1;Name=WP_000548347.1;Ontology_term=GO:0006567,GO:0004794,GO:0030170;gbkey=CDS;gene=tdcB;go_function=threonine deaminase activity|0004794||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312024.1;locus_tag=AD39_RS06815;product=bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB;protein_id=WP_000548347.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 544272 545210 . - . ID=gene-AD39_RS06810;Name=tdcA;gbkey=Gene;gene=tdcA;gene_biotype=protein_coding;locus_tag=AD39_RS06810;old_locus_tag=AD39_3655 NZ_JJLH01000045.1 Protein Homology CDS 544272 545210 . - 0 ID=cds-WP_001555067.1;Parent=gene-AD39_RS06810;Dbxref=GenBank:WP_001555067.1;Name=WP_001555067.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=tdcA;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312025.1;locus_tag=AD39_RS06810;product=transcriptional regulator TdcA;protein_id=WP_001555067.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 545525 545743 . + . ID=gene-AD39_RS29590;Name=tdcR;gbkey=Gene;gene=tdcR;gene_biotype=protein_coding;locus_tag=AD39_RS29590;old_locus_tag=AD39_3656 NZ_JJLH01000045.1 Protein Homology CDS 545525 545743 . + 0 ID=cds-WP_001390702.1;Parent=gene-AD39_RS29590;Dbxref=GenBank:WP_001390702.1;Name=WP_001390702.1;gbkey=CDS;gene=tdcR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417589.4;locus_tag=AD39_RS29590;product=transcriptional activator TdcR;protein_id=WP_001390702.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 545999 546538 . + . ID=gene-AD39_RS06805;Name=yhaB;gbkey=Gene;gene=yhaB;gene_biotype=protein_coding;locus_tag=AD39_RS06805;old_locus_tag=AD39_3657 NZ_JJLH01000045.1 Protein Homology CDS 545999 546538 . + 0 ID=cds-WP_000675745.1;Parent=gene-AD39_RS06805;Dbxref=GenBank:WP_000675745.1;Name=WP_000675745.1;gbkey=CDS;gene=yhaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417590.2;locus_tag=AD39_RS06805;product=protein YhaB;protein_id=WP_000675745.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 546560 547747 . + . ID=gene-AD39_RS06800;Name=yhaC;gbkey=Gene;gene=yhaC;gene_biotype=protein_coding;locus_tag=AD39_RS06800;old_locus_tag=AD39_3658 NZ_JJLH01000045.1 Protein Homology CDS 546560 547747 . + 0 ID=cds-WP_000484554.1;Parent=gene-AD39_RS06800;Dbxref=GenBank:WP_000484554.1;Name=WP_000484554.1;gbkey=CDS;gene=yhaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312028.1;locus_tag=AD39_RS06800;product=YhaC family protein;protein_id=WP_000484554.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 548142 548518 . - . ID=gene-AD39_RS26090;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=RNase_P_RNA;locus_tag=AD39_RS26090 NZ_JJLH01000045.1 cmsearch RNase_P_RNA 548142 548518 . - . ID=rna-AD39_RS26090;Parent=gene-AD39_RS26090;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26090;product=RNase P RNA component class A NZ_JJLH01000045.1 cmsearch exon 548142 548518 . - . ID=exon-AD39_RS26090-1;Parent=rna-AD39_RS26090;Dbxref=RFAM:RF00010;gbkey=ncRNA;gene=rnpB;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS26090;product=RNase P RNA component class A NZ_JJLH01000045.1 RefSeq gene 548551 549696 . - . ID=gene-AD39_RS06795;Name=garK;gbkey=Gene;gene=garK;gene_biotype=protein_coding;locus_tag=AD39_RS06795;old_locus_tag=AD39_3660 NZ_JJLH01000045.1 Protein Homology CDS 548551 549696 . - 0 ID=cds-WP_001297158.1;Parent=gene-AD39_RS06795;Dbxref=GenBank:WP_001297158.1;Name=WP_001297158.1;Ontology_term=GO:0031388,GO:0008887;gbkey=CDS;gene=garK;go_function=glycerate kinase activity|0008887||IEA;go_process=organic acid phosphorylation|0031388||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312029.2;locus_tag=AD39_RS06795;product=glycerate 2-kinase;protein_id=WP_001297158.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 549793 550683 . - . ID=gene-AD39_RS06790;Name=garR;gbkey=Gene;gene=garR;gene_biotype=protein_coding;locus_tag=AD39_RS06790;old_locus_tag=AD39_3661 NZ_JJLH01000045.1 Protein Homology CDS 549793 550683 . - 0 ID=cds-WP_001303675.1;Parent=gene-AD39_RS06790;Dbxref=GenBank:WP_001303675.1;Name=WP_001303675.1;Ontology_term=GO:0046487,GO:0008679;gbkey=CDS;gene=garR;go_function=2-hydroxy-3-oxopropionate reductase activity|0008679||IEA;go_process=glyoxylate metabolic process|0046487||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312030.2;locus_tag=AD39_RS06790;product=2-hydroxy-3-oxopropionate reductase;protein_id=WP_001303675.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 550713 551483 . - . ID=gene-AD39_RS06785;Name=garL;gbkey=Gene;gene=garL;gene_biotype=protein_coding;locus_tag=AD39_RS06785;old_locus_tag=AD39_3662 NZ_JJLH01000045.1 Protein Homology CDS 550713 551483 . - 0 ID=cds-WP_001058227.1;Parent=gene-AD39_RS06785;Dbxref=GenBank:WP_001058227.1;Name=WP_001058227.1;Ontology_term=GO:0019394,GO:0008672;gbkey=CDS;gene=garL;go_function=2-dehydro-3-deoxyglucarate aldolase activity|0008672||IEA;go_process=glucarate catabolic process|0019394||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312031.1;locus_tag=AD39_RS06785;product=2-dehydro-3-deoxyglucarate aldolase;protein_id=WP_001058227.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 551499 552833 . - . ID=gene-AD39_RS06780;Name=garP;gbkey=Gene;gene=garP;gene_biotype=protein_coding;locus_tag=AD39_RS06780;old_locus_tag=AD39_3663 NZ_JJLH01000045.1 Protein Homology CDS 551499 552833 . - 0 ID=cds-WP_000599636.1;Parent=gene-AD39_RS06780;Dbxref=GenBank:WP_000599636.1;Name=WP_000599636.1;gbkey=CDS;gene=garP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312032.1;locus_tag=AD39_RS06780;product=galactarate/glucarate/glycerate transporter GarP;protein_id=WP_000599636.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 553208 554779 . + . ID=gene-AD39_RS06770;Name=garD;gbkey=Gene;gene=garD;gene_biotype=protein_coding;locus_tag=AD39_RS06770;old_locus_tag=AD39_3666 NZ_JJLH01000045.1 Protein Homology CDS 553208 554779 . + 0 ID=cds-WP_001273741.1;Parent=gene-AD39_RS06770;Dbxref=GenBank:WP_001273741.1;Name=WP_001273741.1;Ontology_term=GO:0046392,GO:0008867;gbkey=CDS;gene=garD;go_function=galactarate dehydratase activity|0008867||IEA;go_process=galactarate catabolic process|0046392||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312033.1;locus_tag=AD39_RS06770;product=galactarate dehydratase;protein_id=WP_001273741.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 554928 555263 . + . ID=gene-AD39_RS0125240;Name=prlF;gbkey=Gene;gene=prlF;gene_biotype=protein_coding;locus_tag=AD39_RS0125240 NZ_JJLH01000045.1 Protein Homology CDS 554928 555263 . + 0 ID=cds-WP_001307405.1;Parent=gene-AD39_RS0125240;Dbxref=GenBank:WP_001307405.1;Name=WP_001307405.1;gbkey=CDS;gene=prlF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417598.1;locus_tag=AD39_RS0125240;product=type II toxin-antitoxin system antitoxin PrlF;protein_id=WP_001307405.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 555263 555727 . + . ID=gene-AD39_RS0125245;Name=yhaV;gbkey=Gene;gene=yhaV;gene_biotype=protein_coding;locus_tag=AD39_RS0125245;old_locus_tag=AD39_3668 NZ_JJLH01000045.1 Protein Homology CDS 555263 555727 . + 0 ID=cds-WP_000347267.1;Parent=gene-AD39_RS0125245;Dbxref=GenBank:WP_000347267.1;Name=WP_000347267.1;gbkey=CDS;gene=yhaV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312035.1;locus_tag=AD39_RS0125245;product=type II toxin-antitoxin system ribonuclease toxin YhaV;protein_id=WP_000347267.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 555782 556591 . - . ID=gene-AD39_RS06765;Name=agaR;gbkey=Gene;gene=agaR;gene_biotype=protein_coding;locus_tag=AD39_RS06765;old_locus_tag=AD39_3669 NZ_JJLH01000045.1 Protein Homology CDS 555782 556591 . - 0 ID=cds-WP_000072187.1;Parent=gene-AD39_RS06765;Dbxref=GenBank:WP_000072187.1;Name=WP_000072187.1;gbkey=CDS;gene=agaR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312036.1;locus_tag=AD39_RS06765;product=aga operon transcriptional regulator AgaR;protein_id=WP_000072187.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 556840 558120 . + . ID=gene-AD39_RS06760;Name=kbaZ;gbkey=Gene;gene=kbaZ;gene_biotype=protein_coding;locus_tag=AD39_RS06760;old_locus_tag=AD39_3670 NZ_JJLH01000045.1 Protein Homology CDS 556840 558120 . + 0 ID=cds-WP_000681921.1;Parent=gene-AD39_RS06760;Dbxref=GenBank:WP_000681921.1;Name=WP_000681921.1;gbkey=CDS;gene=kbaZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417601.1;locus_tag=AD39_RS06760;product=tagatose-bisphosphate aldolase subunit KbaZ;protein_id=WP_000681921.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 558143 558616 . + . ID=gene-AD39_RS06755;Name=agaV;gbkey=Gene;gene=agaV;gene_biotype=protein_coding;locus_tag=AD39_RS06755;old_locus_tag=AD39_3671 NZ_JJLH01000045.1 Protein Homology CDS 558143 558616 . + 0 ID=cds-WP_001295547.1;Parent=gene-AD39_RS06755;Dbxref=GenBank:WP_001295547.1;Name=WP_001295547.1;gbkey=CDS;gene=agaV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312038.2;locus_tag=AD39_RS06755;product=PTS N-acetylgalactosamine transporter subunit IIB;protein_id=WP_001295547.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 558627 559406 . + . ID=gene-AD39_RS06750;Name=agaW;gbkey=Gene;gene=agaW;gene_biotype=protein_coding;locus_tag=AD39_RS06750;old_locus_tag=AD39_3672 NZ_JJLH01000045.1 Protein Homology CDS 558627 559406 . + 0 ID=cds-WP_000406214.1;Parent=gene-AD39_RS06750;Dbxref=GenBank:WP_000406214.1;Name=WP_000406214.1;gbkey=CDS;gene=agaW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312039.1;locus_tag=AD39_RS06750;product=PTS N-acetylgalactosamine transporter subunit IIC;protein_id=WP_000406214.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 559396 560274 . + . ID=gene-AD39_RS06745;Name=agaE;gbkey=Gene;gene=agaE;gene_biotype=protein_coding;locus_tag=AD39_RS06745;old_locus_tag=AD39_3673 NZ_JJLH01000045.1 Protein Homology CDS 559396 560274 . + 0 ID=cds-WP_001298758.1;Parent=gene-AD39_RS06745;Dbxref=GenBank:WP_001298758.1;Name=WP_001298758.1;gbkey=CDS;gene=agaE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019079236.1;locus_tag=AD39_RS06745;product=PTS N-acetylgalactosamine transporter subunit IID;protein_id=WP_001298758.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 560292 560726 . + . ID=gene-AD39_RS06740;Name=agaF;gbkey=Gene;gene=agaF;gene_biotype=protein_coding;locus_tag=AD39_RS06740;old_locus_tag=AD39_3674 NZ_JJLH01000045.1 Protein Homology CDS 560292 560726 . + 0 ID=cds-WP_000948824.1;Parent=gene-AD39_RS06740;Dbxref=GenBank:WP_000948824.1;Name=WP_000948824.1;gbkey=CDS;gene=agaF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312041.1;locus_tag=AD39_RS06740;product=PTS galactosamine/N-acetylgalactosamine transporter subunit IIA;protein_id=WP_000948824.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 560723 561856 . + . ID=gene-AD39_RS06735;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=AD39_RS06735;old_locus_tag=AD39_3675 NZ_JJLH01000045.1 Protein Homology CDS 560723 561856 . + 0 ID=cds-WP_001326138.1;Parent=gene-AD39_RS06735;Dbxref=GenBank:WP_001326138.1;Name=WP_001326138.1;Ontology_term=GO:0006044,GO:0008448;gbkey=CDS;gene=nagA;go_function=N-acetylglucosamine-6-phosphate deacetylase activity|0008448||IEA;go_process=N-acetylglucosamine metabolic process|0006044||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312042.2;locus_tag=AD39_RS06735;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=WP_001326138.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 562206 563360 . + . ID=gene-AD39_RS06730;Name=agaS;gbkey=Gene;gene=agaS;gene_biotype=protein_coding;locus_tag=AD39_RS06730;old_locus_tag=AD39_3676 NZ_JJLH01000045.1 Protein Homology CDS 562206 563360 . + 0 ID=cds-WP_001114873.1;Parent=gene-AD39_RS06730;Dbxref=GenBank:WP_001114873.1;Name=WP_001114873.1;gbkey=CDS;gene=agaS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417605.1;locus_tag=AD39_RS06730;product=AgaS family sugar isomerase;protein_id=WP_001114873.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 563373 564233 . + . ID=gene-AD39_RS06725;Name=kbaY;gbkey=Gene;gene=kbaY;gene_biotype=protein_coding;locus_tag=AD39_RS06725;old_locus_tag=AD39_3677 NZ_JJLH01000045.1 Protein Homology CDS 563373 564233 . + 0 ID=cds-WP_000022766.1;Parent=gene-AD39_RS06725;Dbxref=GenBank:WP_000022766.1;Name=WP_000022766.1;gbkey=CDS;gene=kbaY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312044.1;locus_tag=AD39_RS06725;product=tagatose-bisphosphate aldolase subunit KbaY;protein_id=WP_000022766.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 564400 564876 . + . ID=gene-AD39_RS06720;Name=agaB;gbkey=Gene;gene=agaB;gene_biotype=protein_coding;locus_tag=AD39_RS06720;old_locus_tag=AD39_3678 NZ_JJLH01000045.1 Protein Homology CDS 564400 564876 . + 0 ID=cds-WP_000098017.1;Parent=gene-AD39_RS06720;Dbxref=GenBank:WP_000098017.1;Name=WP_000098017.1;gbkey=CDS;gene=agaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312045.1;locus_tag=AD39_RS06720;product=PTS galactosamine transporter subunit IIB;protein_id=WP_000098017.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 564915 565718 . + . ID=gene-AD39_RS06715;Name=agaC;gbkey=Gene;gene=agaC;gene_biotype=protein_coding;locus_tag=AD39_RS06715;old_locus_tag=AD39_3679 NZ_JJLH01000045.1 Protein Homology CDS 564915 565718 . + 0 ID=cds-WP_000544489.1;Parent=gene-AD39_RS06715;Dbxref=GenBank:WP_000544489.1;Name=WP_000544489.1;gbkey=CDS;gene=agaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417608.1;locus_tag=AD39_RS06715;product=PTS galactosamine transporter subunit IIC;protein_id=WP_000544489.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 565708 566499 . + . ID=gene-AD39_RS06710;Name=agaD;gbkey=Gene;gene=agaD;gene_biotype=protein_coding;locus_tag=AD39_RS06710;old_locus_tag=AD39_3680 NZ_JJLH01000045.1 Protein Homology CDS 565708 566499 . + 0 ID=cds-WP_000534351.1;Parent=gene-AD39_RS06710;Dbxref=GenBank:WP_000534351.1;Name=WP_000534351.1;gbkey=CDS;gene=agaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708938.2;locus_tag=AD39_RS06710;product=PTS galactosamine transporter subunit IID;protein_id=WP_000534351.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 566500 567255 . + . ID=gene-AD39_RS06705;Name=agaI;gbkey=Gene;gene=agaI;gene_biotype=protein_coding;locus_tag=AD39_RS06705;old_locus_tag=AD39_3681 NZ_JJLH01000045.1 Protein Homology CDS 566500 567255 . + 0 ID=cds-WP_001307409.1;Parent=gene-AD39_RS06705;Dbxref=GenBank:WP_001307409.1;Name=WP_001307409.1;gbkey=CDS;gene=agaI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708939.1;locus_tag=AD39_RS06705;product=galactosamine-6-phosphate isomerase;protein_id=WP_001307409.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 567655 568239 . + . ID=gene-AD39_RS06700;Name=yraH;gbkey=Gene;gene=yraH;gene_biotype=protein_coding;locus_tag=AD39_RS06700;old_locus_tag=AD39_3682 NZ_JJLH01000045.1 Protein Homology CDS 567655 568239 . + 0 ID=cds-WP_001045442.1;Parent=gene-AD39_RS06700;Dbxref=GenBank:WP_001045442.1;Name=WP_001045442.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=yraH;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312047.1;locus_tag=AD39_RS06700;product=fimbrial protein;protein_id=WP_001045442.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 568319 569014 . + . ID=gene-AD39_RS06695;Name=yraI;gbkey=Gene;gene=yraI;gene_biotype=protein_coding;locus_tag=AD39_RS06695;old_locus_tag=AD39_3683 NZ_JJLH01000045.1 Protein Homology CDS 568319 569014 . + 0 ID=cds-WP_000044768.1;Parent=gene-AD39_RS06695;Dbxref=GenBank:WP_000044768.1;Name=WP_000044768.1;Ontology_term=GO:0043711,GO:0061077,GO:0030288;gbkey=CDS;gene=yraI;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_process=pilus organization|0043711||IEA,chaperone-mediated protein folding|0061077||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417612.1;locus_tag=AD39_RS06695;product=fimbrial biogenesis chaperone;protein_id=WP_000044768.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 569044 571560 . + . ID=gene-AD39_RS06690;Name=yraJ;gbkey=Gene;gene=yraJ;gene_biotype=protein_coding;locus_tag=AD39_RS06690;old_locus_tag=AD39_3684 NZ_JJLH01000045.1 Protein Homology CDS 569044 571560 . + 0 ID=cds-WP_001136466.1;Parent=gene-AD39_RS06690;Dbxref=GenBank:WP_001136466.1;Name=WP_001136466.1;Ontology_term=GO:0009297,GO:0015473,GO:0016020;gbkey=CDS;gene=yraJ;go_component=membrane|0016020||IEA;go_function=fimbrial usher porin activity|0015473||IEA;go_process=pilus assembly|0009297||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312049.1;locus_tag=AD39_RS06690;product=fimbria/pilus outer membrane usher protein;protein_id=WP_001136466.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 571571 572662 . + . ID=gene-AD39_RS06685;Name=yraK;gbkey=Gene;gene=yraK;gene_biotype=protein_coding;locus_tag=AD39_RS06685;old_locus_tag=AD39_3685 NZ_JJLH01000045.1 Protein Homology CDS 571571 572662 . + 0 ID=cds-WP_000816992.1;Parent=gene-AD39_RS06685;Dbxref=GenBank:WP_000816992.1;Name=WP_000816992.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=yraK;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417614.1;locus_tag=AD39_RS06685;product=fimbrial protein;protein_id=WP_000816992.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 572705 573565 . - . ID=gene-AD39_RS06680;Name=rsmI;gbkey=Gene;gene=rsmI;gene_biotype=protein_coding;locus_tag=AD39_RS06680;old_locus_tag=AD39_3686 NZ_JJLH01000045.1 Protein Homology CDS 572705 573565 . - 0 ID=cds-WP_000809262.1;Parent=gene-AD39_RS06680;Dbxref=GenBank:WP_000809262.1;Name=WP_000809262.1;Ontology_term=GO:0008168;gbkey=CDS;gene=rsmI;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312054.1;locus_tag=AD39_RS06680;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=WP_000809262.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 573629 575665 . + . ID=gene-AD39_RS06675;Name=lpoA;gbkey=Gene;gene=lpoA;gene_biotype=protein_coding;locus_tag=AD39_RS06675;old_locus_tag=AD39_3687 NZ_JJLH01000045.1 Protein Homology CDS 573629 575665 . + 0 ID=cds-WP_032198570.1;Parent=gene-AD39_RS06675;Dbxref=GenBank:WP_032198570.1;Name=WP_032198570.1;gbkey=CDS;gene=lpoA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312055.1;locus_tag=AD39_RS06675;product=penicillin-binding protein activator LpoA;protein_id=WP_032198570.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 575623 576018 . + . ID=gene-AD39_RS06670;Name=yraN;gbkey=Gene;gene=yraN;gene_biotype=protein_coding;locus_tag=AD39_RS06670;old_locus_tag=AD39_3688 NZ_JJLH01000045.1 Protein Homology CDS 575623 576018 . + 0 ID=cds-WP_032287622.1;Parent=gene-AD39_RS06670;Dbxref=GenBank:WP_032287622.1;Name=WP_032287622.1;gbkey=CDS;gene=yraN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417617.1;locus_tag=AD39_RS06670;product=YraN family protein;protein_id=WP_032287622.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 576038 576628 . + . ID=gene-AD39_RS06665;Name=diaA;gbkey=Gene;gene=diaA;gene_biotype=protein_coding;locus_tag=AD39_RS06665;old_locus_tag=AD39_3689 NZ_JJLH01000045.1 Protein Homology CDS 576038 576628 . + 0 ID=cds-WP_001158035.1;Parent=gene-AD39_RS06665;Dbxref=GenBank:WP_001158035.1;Name=WP_001158035.1;gbkey=CDS;gene=diaA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001483830.1;locus_tag=AD39_RS06665;product=DnaA initiator-associating protein DiaA;protein_id=WP_001158035.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 576638 577213 . + . ID=gene-AD39_RS06660;Name=dolP;gbkey=Gene;gene=dolP;gene_biotype=protein_coding;locus_tag=AD39_RS06660;old_locus_tag=AD39_3690 NZ_JJLH01000045.1 Protein Homology CDS 576638 577213 . + 0 ID=cds-WP_000646033.1;Parent=gene-AD39_RS06660;Dbxref=GenBank:WP_000646033.1;Name=WP_000646033.1;Ontology_term=GO:0006970;gbkey=CDS;gene=dolP;go_process=response to osmotic stress|0006970||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312058.1;locus_tag=AD39_RS06660;product=division/outer membrane stress-associated lipid-binding lipoprotein;protein_id=WP_000646033.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 577327 578376 . - . ID=gene-AD39_RS06655;Name=yraQ;gbkey=Gene;gene=yraQ;gene_biotype=protein_coding;locus_tag=AD39_RS06655;old_locus_tag=AD39_3691 NZ_JJLH01000045.1 Protein Homology CDS 577327 578376 . - 0 ID=cds-WP_032283538.1;Parent=gene-AD39_RS06655;Dbxref=GenBank:WP_032283538.1;Name=WP_032283538.1;Ontology_term=GO:0005886;gbkey=CDS;gene=yraQ;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312059.1;locus_tag=AD39_RS06655;product=permease;protein_id=WP_032283538.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 578449 579084 . - . ID=gene-AD39_RS06650;Name=yraR;gbkey=Gene;gene=yraR;gene_biotype=protein_coding;locus_tag=AD39_RS06650;old_locus_tag=AD39_3692 NZ_JJLH01000045.1 Protein Homology CDS 578449 579084 . - 0 ID=cds-WP_001315854.1;Parent=gene-AD39_RS06650;Dbxref=GenBank:WP_001315854.1;Name=WP_001315854.1;gbkey=CDS;gene=yraR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417621.2;locus_tag=AD39_RS06650;product=NAD(P)H-binding protein;protein_id=WP_001315854.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 579212 579730 . + . ID=gene-AD39_RS06645;Name=yhbO;gbkey=Gene;gene=yhbO;gene_biotype=protein_coding;locus_tag=AD39_RS06645;old_locus_tag=AD39_3693 NZ_JJLH01000045.1 Protein Homology CDS 579212 579730 . + 0 ID=cds-WP_000037608.1;Parent=gene-AD39_RS06645;Dbxref=GenBank:WP_000037608.1;Name=WP_000037608.1;gbkey=CDS;gene=yhbO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417622.2;locus_tag=AD39_RS06645;product=protein/nucleic acid deglycase;protein_id=WP_000037608.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 579710 580153 . - . ID=gene-AD39_RS06640;Name=yhbP;gbkey=Gene;gene=yhbP;gene_biotype=protein_coding;locus_tag=AD39_RS06640;old_locus_tag=AD39_3694 NZ_JJLH01000045.1 Protein Homology CDS 579710 580153 . - 0 ID=cds-WP_000449451.1;Parent=gene-AD39_RS06640;Dbxref=GenBank:WP_000449451.1;Name=WP_000449451.1;gbkey=CDS;gene=yhbP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417623.1;locus_tag=AD39_RS06640;product=YhbP family protein;protein_id=WP_000449451.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 580204 580506 . + . ID=gene-AD39_RS06635;Name=yhbQ;gbkey=Gene;gene=yhbQ;gene_biotype=protein_coding;locus_tag=AD39_RS06635;old_locus_tag=AD39_3695 NZ_JJLH01000045.1 Protein Homology CDS 580204 580506 . + 0 ID=cds-WP_032286119.1;Parent=gene-AD39_RS06635;Dbxref=GenBank:WP_032286119.1;Name=WP_032286119.1;gbkey=CDS;gene=yhbQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708956.2;locus_tag=AD39_RS06635;product=DNA damage response exodeoxyribonuclease YhbQ;protein_id=WP_032286119.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 580493 580996 . - . ID=gene-AD39_RS06630;Name=yhbS;gbkey=Gene;gene=yhbS;gene_biotype=protein_coding;locus_tag=AD39_RS06630;old_locus_tag=AD39_3696 NZ_JJLH01000045.1 Protein Homology CDS 580493 580996 . - 0 ID=cds-WP_000908554.1;Parent=gene-AD39_RS06630;Dbxref=GenBank:WP_000908554.1;Name=WP_000908554.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;gene=yhbS;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312064.1;locus_tag=AD39_RS06630;product=GNAT family N-acetyltransferase;protein_id=WP_000908554.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 580990 581514 . - . ID=gene-AD39_RS06625;Name=ubiT;gbkey=Gene;gene=ubiT;gene_biotype=protein_coding;locus_tag=AD39_RS06625;old_locus_tag=AD39_3697 NZ_JJLH01000045.1 Protein Homology CDS 580990 581514 . - 0 ID=cds-WP_001295552.1;Parent=gene-AD39_RS06625;Dbxref=GenBank:WP_001295552.1;Name=WP_001295552.1;Ontology_term=GO:0006744,GO:0110142;gbkey=CDS;gene=ubiT;go_component=ubiquinone biosynthesis complex|0110142||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312065.1;locus_tag=AD39_RS06625;product=ubiquinone anaerobic biosynthesis accessory factor UbiT;protein_id=WP_001295552.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 581723 582718 . + . ID=gene-AD39_RS06620;Name=ubiU;gbkey=Gene;gene=ubiU;gene_biotype=protein_coding;locus_tag=AD39_RS06620;old_locus_tag=AD39_3699 NZ_JJLH01000045.1 Protein Homology CDS 581723 582718 . + 0 ID=cds-WP_000421305.1;Parent=gene-AD39_RS06620;Dbxref=GenBank:WP_000421305.1;Name=WP_000421305.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiU;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017457364.1;locus_tag=AD39_RS06620;product=ubiquinone anaerobic biosynthesis protein UbiU;protein_id=WP_000421305.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 582727 583605 . + . ID=gene-AD39_RS06615;Name=ubiV;gbkey=Gene;gene=ubiV;gene_biotype=protein_coding;locus_tag=AD39_RS06615;old_locus_tag=AD39_3700 NZ_JJLH01000045.1 Protein Homology CDS 582727 583605 . + 0 ID=cds-WP_001301318.1;Parent=gene-AD39_RS06615;Dbxref=GenBank:WP_001301318.1;Name=WP_001301318.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiV;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417628.2;locus_tag=AD39_RS06615;product=U32 family peptidase;protein_id=WP_001301318.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 583686 584693 . + . ID=gene-AD39_RS06610;Name=yhbW;gbkey=Gene;gene=yhbW;gene_biotype=protein_coding;locus_tag=AD39_RS06610;old_locus_tag=AD39_3701 NZ_JJLH01000045.1 Protein Homology CDS 583686 584693 . + 0 ID=cds-WP_032283539.1;Parent=gene-AD39_RS06610;Dbxref=GenBank:WP_032283539.1;Name=WP_032283539.1;Ontology_term=GO:0016705;gbkey=CDS;gene=yhbW;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen|0016705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417629.1;locus_tag=AD39_RS06610;product=luciferase-like monooxygenase;protein_id=WP_032283539.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 584811 586055 . - . ID=gene-AD39_RS06605;Name=mtr;gbkey=Gene;gene=mtr;gene_biotype=protein_coding;locus_tag=AD39_RS06605;old_locus_tag=AD39_3702 NZ_JJLH01000045.1 Protein Homology CDS 584811 586055 . - 0 ID=cds-WP_000224354.1;Parent=gene-AD39_RS06605;Dbxref=GenBank:WP_000224354.1;Name=WP_000224354.1;Ontology_term=GO:0015801,GO:0015173,GO:0005886;gbkey=CDS;gene=mtr;go_component=plasma membrane|0005886||IEA;go_function=aromatic amino acid transmembrane transporter activity|0015173||IEA;go_process=aromatic amino acid transport|0015801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312069.1;locus_tag=AD39_RS06605;product=tryptophan permease;protein_id=WP_000224354.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 586209 588098 . - . ID=gene-AD39_RS06600;Name=deaD;gbkey=Gene;gene=deaD;gene_biotype=protein_coding;locus_tag=AD39_RS06600;old_locus_tag=AD39_3703 NZ_JJLH01000045.1 Protein Homology CDS 586209 588098 . - 0 ID=cds-WP_001297428.1;Parent=gene-AD39_RS06600;Dbxref=GenBank:WP_001297428.1;Name=WP_001297428.1;gbkey=CDS;gene=deaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417631.2;locus_tag=AD39_RS06600;product=ATP-dependent RNA helicase DeaD;protein_id=WP_001297428.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 588091 588171 . - . ID=gene-AD39_RS28715;Name=yrbN;gbkey=Gene;gene=yrbN;gene_biotype=protein_coding;locus_tag=AD39_RS28715 NZ_JJLH01000045.1 Protein Homology CDS 588091 588171 . - 0 ID=cds-WP_010723222.1;Parent=gene-AD39_RS28715;Dbxref=GenBank:WP_010723222.1;Name=WP_010723222.1;gbkey=CDS;gene=yrbN;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791258.1;locus_tag=AD39_RS28715;product=protein YrbN;protein_id=WP_010723222.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 588278 589162 . - . ID=gene-AD39_RS06595;Name=nlpI;gbkey=Gene;gene=nlpI;gene_biotype=protein_coding;locus_tag=AD39_RS06595;old_locus_tag=AD39_3704 NZ_JJLH01000045.1 Protein Homology CDS 588278 589162 . - 0 ID=cds-WP_000802080.1;Parent=gene-AD39_RS06595;Dbxref=GenBank:WP_000802080.1;Name=WP_000802080.1;Ontology_term=GO:0005515;gbkey=CDS;gene=nlpI;go_function=protein binding|0005515||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020802045.1;locus_tag=AD39_RS06595;product=lipoprotein NlpI;protein_id=WP_000802080.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 589271 591406 . - . ID=gene-AD39_RS06590;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=protein_coding;locus_tag=AD39_RS06590;old_locus_tag=AD39_3705 NZ_JJLH01000045.1 Protein Homology CDS 589271 591406 . - 0 ID=cds-WP_001295554.1;Parent=gene-AD39_RS06590;Dbxref=GenBank:WP_001295554.1;Name=WP_001295554.1;Ontology_term=GO:0006402,GO:0003723,GO:0004654;gbkey=CDS;gene=pnp;go_function=RNA binding|0003723||IEA,polyribonucleotide nucleotidyltransferase activity|0004654||IEA;go_process=mRNA catabolic process|0006402||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417633.4;locus_tag=AD39_RS06590;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_001295554.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 591653 591922 . - . ID=gene-AD39_RS06585;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;locus_tag=AD39_RS06585;old_locus_tag=AD39_3706 NZ_JJLH01000045.1 Protein Homology CDS 591653 591922 . - 0 ID=cds-WP_000059466.1;Parent=gene-AD39_RS06585;Dbxref=GenBank:WP_000059466.1;Name=WP_000059466.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsO;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004933502.1;locus_tag=AD39_RS06585;product=30S ribosomal protein S15;protein_id=WP_000059466.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 592071 593015 . - . ID=gene-AD39_RS06580;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=AD39_RS06580;old_locus_tag=AD39_3707 NZ_JJLH01000045.1 Protein Homology CDS 592071 593015 . - 0 ID=cds-WP_000089698.1;Parent=gene-AD39_RS06580;Dbxref=GenBank:WP_000089698.1;Name=WP_000089698.1;Ontology_term=GO:0001522,GO:0009451,GO:0003723,GO:0009982;gbkey=CDS;gene=truB;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA,RNA modification|0009451||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312074.1;locus_tag=AD39_RS06580;product=tRNA pseudouridine(55) synthase TruB;protein_id=WP_000089698.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 593015 593416 . - . ID=gene-AD39_RS06575;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=AD39_RS06575;old_locus_tag=AD39_3708 NZ_JJLH01000045.1 Protein Homology CDS 593015 593416 . - 0 ID=cds-WP_001040205.1;Parent=gene-AD39_RS06575;Dbxref=GenBank:WP_001040205.1;Name=WP_001040205.1;Ontology_term=GO:0006364;gbkey=CDS;gene=rbfA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001712908.1;locus_tag=AD39_RS06575;product=30S ribosome-binding factor RbfA;protein_id=WP_001040205.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 593580 596252 . - . ID=gene-AD39_RS06570;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=AD39_RS06570;old_locus_tag=AD39_3709 NZ_JJLH01000045.1 Protein Homology CDS 593580 596252 . - 0 ID=cds-WP_000133044.1;Parent=gene-AD39_RS06570;Dbxref=GenBank:WP_000133044.1;Name=WP_000133044.1;Ontology_term=GO:0006413,GO:0003743,GO:0003924,GO:0005525,GO:0005737;gbkey=CDS;gene=infB;go_component=cytoplasm|0005737||IEA;go_function=translation initiation factor activity|0003743||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=translational initiation|0006413||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312076.1;locus_tag=AD39_RS06570;product=translation initiation factor IF-2;protein_id=WP_000133044.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 596277 597764 . - . ID=gene-AD39_RS06565;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=AD39_RS06565;old_locus_tag=AD39_3710 NZ_JJLH01000045.1 Protein Homology CDS 596277 597764 . - 0 ID=cds-WP_001031055.1;Parent=gene-AD39_RS06565;Dbxref=GenBank:WP_001031055.1;Name=WP_001031055.1;Ontology_term=GO:0006353,GO:0003723;gbkey=CDS;gene=nusA;go_function=RNA binding|0003723||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005131833.1;locus_tag=AD39_RS06565;product=transcription termination factor NusA;protein_id=WP_001031055.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 597792 598244 . - . ID=gene-AD39_RS06560;Name=rimP;gbkey=Gene;gene=rimP;gene_biotype=protein_coding;locus_tag=AD39_RS06560;old_locus_tag=AD39_3711 NZ_JJLH01000045.1 Protein Homology CDS 597792 598244 . - 0 ID=cds-WP_001300397.1;Parent=gene-AD39_RS06560;Dbxref=GenBank:WP_001300397.1;Name=WP_001300397.1;Ontology_term=GO:0042274;gbkey=CDS;gene=rimP;go_process=ribosomal small subunit biogenesis|0042274||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004125659.1;locus_tag=AD39_RS06560;product=ribosome maturation factor RimP;protein_id=WP_001300397.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 598451 598527 . - . ID=gene-AD39_RS06555;Name=AD39_RS06555;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS06555;old_locus_tag=AD39_3712 NZ_JJLH01000045.1 tRNAscan-SE tRNA 598451 598527 . - . ID=rna-AD39_RS06555;Parent=gene-AD39_RS06555;anticodon=(pos:complement(598491..598493));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS06555;product=tRNA-Met NZ_JJLH01000045.1 tRNAscan-SE exon 598451 598527 . - . ID=exon-AD39_RS06555-1;Parent=rna-AD39_RS06555;anticodon=(pos:complement(598491..598493));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS06555;product=tRNA-Met NZ_JJLH01000045.1 RefSeq gene 598875 600218 . + . ID=gene-AD39_RS06550;Name=argG;gbkey=Gene;gene=argG;gene_biotype=protein_coding;locus_tag=AD39_RS06550;old_locus_tag=AD39_3713 NZ_JJLH01000045.1 Protein Homology CDS 598875 600218 . + 0 ID=cds-WP_032283540.1;Parent=gene-AD39_RS06550;Dbxref=GenBank:WP_032283540.1;Name=WP_032283540.1;Ontology_term=GO:0006526,GO:0004055,GO:0005524,GO:0042803;gbkey=CDS;gene=argG;go_function=argininosuccinate synthase activity|0004055||IEA,ATP binding|0005524||IEA,protein homodimerization activity|0042803||IEA;go_process=L-arginine biosynthetic process|0006526||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000207654.1;locus_tag=AD39_RS06550;product=argininosuccinate synthase;protein_id=WP_032283540.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 600402 601355 . + . ID=gene-AD39_RS06545;Name=AD39_RS06545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS06545;old_locus_tag=AD39_3714 NZ_JJLH01000045.1 Protein Homology CDS 600402 601355 . + 0 ID=cds-WP_001012978.1;Parent=gene-AD39_RS06545;Dbxref=GenBank:WP_001012978.1;Name=WP_001012978.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001083598.1;locus_tag=AD39_RS06545;product=helix-turn-helix domain-containing protein;protein_id=WP_001012978.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 601430 601516 . - . ID=gene-AD39_RS06540;Name=AD39_RS06540;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS06540;old_locus_tag=AD39_3715 NZ_JJLH01000045.1 tRNAscan-SE tRNA 601430 601516 . - . ID=rna-AD39_RS06540;Parent=gene-AD39_RS06540;anticodon=(pos:complement(601480..601482));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS06540;product=tRNA-Leu NZ_JJLH01000045.1 tRNAscan-SE exon 601430 601516 . - . ID=exon-AD39_RS06540-1;Parent=rna-AD39_RS06540;anticodon=(pos:complement(601480..601482));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS06540;product=tRNA-Leu NZ_JJLH01000045.1 RefSeq gene 601531 601863 . - . ID=gene-AD39_RS06535;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=AD39_RS06535;old_locus_tag=AD39_3716 NZ_JJLH01000045.1 Protein Homology CDS 601531 601863 . - 0 ID=cds-WP_001295556.1;Parent=gene-AD39_RS06535;Dbxref=GenBank:WP_001295556.1;Name=WP_001295556.1;Ontology_term=GO:0015739,GO:0015136,GO:0016020;gbkey=CDS;gene=secG;go_component=membrane|0016020||IEA;go_function=sialic acid transmembrane transporter activity|0015136||IEA;go_process=sialic acid transport|0015739||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312081.1;locus_tag=AD39_RS06535;product=preprotein translocase subunit SecG;protein_id=WP_001295556.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 602091 603428 . - . ID=gene-AD39_RS06530;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=AD39_RS06530;old_locus_tag=AD39_3717 NZ_JJLH01000045.1 Protein Homology CDS 602091 603428 . - 0 ID=cds-WP_000071134.1;Parent=gene-AD39_RS06530;Dbxref=GenBank:WP_000071134.1;Name=WP_000071134.1;Ontology_term=GO:0005975,GO:0000287,GO:0008966,GO:0016868;gbkey=CDS;gene=glmM;go_function=magnesium ion binding|0000287||IEA,phosphoglucosamine mutase activity|0008966||IEA,intramolecular phosphotransferase activity|0016868||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417643.1;locus_tag=AD39_RS06530;product=phosphoglucosamine mutase;protein_id=WP_000071134.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 603421 604269 . - . ID=gene-AD39_RS06525;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=AD39_RS06525;old_locus_tag=AD39_3718 NZ_JJLH01000045.1 Protein Homology CDS 603421 604269 . - 0 ID=cds-WP_000764731.1;Parent=gene-AD39_RS06525;Dbxref=GenBank:WP_000764731.1;Name=WP_000764731.1;Ontology_term=GO:0004156;gbkey=CDS;gene=folP;go_function=dihydropteroate synthase activity|0004156||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312083.2;locus_tag=AD39_RS06525;product=dihydropteroate synthase;protein_id=WP_000764731.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 604359 606293 . - . ID=gene-AD39_RS06520;Name=ftsH;gbkey=Gene;gene=ftsH;gene_biotype=protein_coding;locus_tag=AD39_RS06520;old_locus_tag=AD39_3719 NZ_JJLH01000045.1 Protein Homology CDS 604359 606293 . - 0 ID=cds-WP_001107467.1;Parent=gene-AD39_RS06520;Dbxref=GenBank:WP_001107467.1;Name=WP_001107467.1;Ontology_term=GO:0006508,GO:0004176,GO:0004222;gbkey=CDS;gene=ftsH;go_function=ATP-dependent peptidase activity|0004176||IEA,metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014833437.1;locus_tag=AD39_RS06520;product=ATP-dependent zinc metalloprotease FtsH;protein_id=WP_001107467.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 606393 607022 . - . ID=gene-AD39_RS06515;Name=rlmE;gbkey=Gene;gene=rlmE;gene_biotype=protein_coding;locus_tag=AD39_RS06515;old_locus_tag=AD39_3720 NZ_JJLH01000045.1 Protein Homology CDS 606393 607022 . - 0 ID=cds-WP_000145975.1;Parent=gene-AD39_RS06515;Dbxref=GenBank:WP_000145975.1;Name=WP_000145975.1;Ontology_term=GO:0001510,GO:0006364,GO:0016436;gbkey=CDS;gene=rlmE;go_function=rRNA (uridine) methyltransferase activity|0016436||IEA;go_process=RNA methylation|0001510||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312085.1;locus_tag=AD39_RS06515;product=23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE;protein_id=WP_000145975.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 607148 607441 . + . ID=gene-AD39_RS06510;Name=yhbY;gbkey=Gene;gene=yhbY;gene_biotype=protein_coding;locus_tag=AD39_RS06510;old_locus_tag=AD39_3721 NZ_JJLH01000045.1 Protein Homology CDS 607148 607441 . + 0 ID=cds-WP_001054420.1;Parent=gene-AD39_RS06510;Dbxref=GenBank:WP_001054420.1;Name=WP_001054420.1;gbkey=CDS;gene=yhbY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014833438.1;locus_tag=AD39_RS06510;product=ribosome assembly RNA-binding protein YhbY;protein_id=WP_001054420.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 607597 608073 . - . ID=gene-AD39_RS06505;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=AD39_RS06505;old_locus_tag=AD39_3722 NZ_JJLH01000045.1 Protein Homology CDS 607597 608073 . - 0 ID=cds-WP_001148001.1;Parent=gene-AD39_RS06505;Dbxref=GenBank:WP_001148001.1;Name=WP_001148001.1;Ontology_term=GO:0032784,GO:0003677,GO:0070063;gbkey=CDS;gene=greA;go_function=DNA binding|0003677||IEA,RNA polymerase binding|0070063||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006178768.1;locus_tag=AD39_RS06505;product=transcription elongation factor GreA;protein_id=WP_001148001.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 608321 609754 . + . ID=gene-AD39_RS06500;Name=dacB;gbkey=Gene;gene=dacB;gene_biotype=protein_coding;locus_tag=AD39_RS06500;old_locus_tag=AD39_3723 NZ_JJLH01000045.1 Protein Homology CDS 608321 609754 . + 0 ID=cds-WP_001212655.1;Parent=gene-AD39_RS06500;Dbxref=GenBank:WP_001212655.1;Name=WP_001212655.1;Ontology_term=GO:0006508,GO:0004185;gbkey=CDS;gene=dacB;go_function=serine-type carboxypeptidase activity|0004185||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001212660.1;locus_tag=AD39_RS06500;product=serine-type D-Ala-D-Ala carboxypeptidase;protein_id=WP_001212655.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 609794 610966 . - . ID=gene-AD39_RS06495;Name=cgtA;gbkey=Gene;gene=cgtA;gene_biotype=protein_coding;locus_tag=AD39_RS06495;old_locus_tag=AD39_3724 NZ_JJLH01000045.1 Protein Homology CDS 609794 610966 . - 0 ID=cds-WP_000673561.1;Parent=gene-AD39_RS06495;Dbxref=GenBank:WP_000673561.1;Name=WP_000673561.1;Ontology_term=GO:0000287,GO:0003924,GO:0005525;gbkey=CDS;gene=cgtA;go_function=magnesium ion binding|0000287||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708982.1;locus_tag=AD39_RS06495;product=Obg family GTPase CgtA;protein_id=WP_000673561.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 610982 611947 . - . ID=gene-AD39_RS06490;Name=yhbE;gbkey=Gene;gene=yhbE;gene_biotype=protein_coding;locus_tag=AD39_RS06490;old_locus_tag=AD39_3725 NZ_JJLH01000045.1 Protein Homology CDS 610982 611947 . - 0 ID=cds-WP_000813030.1;Parent=gene-AD39_RS06490;Dbxref=GenBank:WP_000813030.1;Name=WP_000813030.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yhbE;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012135318.1;locus_tag=AD39_RS06490;product=DMT family transporter;protein_id=WP_000813030.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 612074 612331 . - . ID=gene-AD39_RS06485;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=AD39_RS06485;old_locus_tag=AD39_3726 NZ_JJLH01000045.1 Protein Homology CDS 612074 612331 . - 0 ID=cds-WP_000940595.1;Parent=gene-AD39_RS06485;Dbxref=GenBank:WP_000940595.1;Name=WP_000940595.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmA;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004933559.1;locus_tag=AD39_RS06485;product=50S ribosomal protein L27;protein_id=WP_000940595.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 612352 612663 . - . ID=gene-AD39_RS06480;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=AD39_RS06480;old_locus_tag=AD39_3727 NZ_JJLH01000045.1 Protein Homology CDS 612352 612663 . - 0 ID=cds-WP_000271401.1;Parent=gene-AD39_RS06480;Dbxref=GenBank:WP_000271401.1;Name=WP_000271401.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rplU;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015960603.1;locus_tag=AD39_RS06480;product=50S ribosomal protein L21;protein_id=WP_000271401.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 612922 613893 . + . ID=gene-AD39_RS06475;Name=ispB;gbkey=Gene;gene=ispB;gene_biotype=protein_coding;locus_tag=AD39_RS06475;old_locus_tag=AD39_3728 NZ_JJLH01000045.1 Protein Homology CDS 612922 613893 . + 0 ID=cds-WP_001047336.1;Parent=gene-AD39_RS06475;Dbxref=GenBank:WP_001047336.1;Name=WP_001047336.1;Ontology_term=GO:0008299;gbkey=CDS;gene=ispB;go_process=isoprenoid biosynthetic process|0008299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417654.1;locus_tag=AD39_RS06475;product=octaprenyl diphosphate synthase;protein_id=WP_001047336.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 614121 614399 . + . ID=gene-AD39_RS06470;Name=sfsB;gbkey=Gene;gene=sfsB;gene_biotype=protein_coding;locus_tag=AD39_RS06470;old_locus_tag=AD39_3729 NZ_JJLH01000045.1 Protein Homology CDS 614121 614399 . + 0 ID=cds-WP_000445413.1;Parent=gene-AD39_RS06470;Dbxref=GenBank:WP_000445413.1;Name=WP_000445413.1;gbkey=CDS;gene=sfsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417655.1;locus_tag=AD39_RS06470;product=DNA-binding transcriptional regulator SfsB;protein_id=WP_000445413.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 614447 615706 . - . ID=gene-AD39_RS06465;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;locus_tag=AD39_RS06465;old_locus_tag=AD39_3730 NZ_JJLH01000045.1 Protein Homology CDS 614447 615706 . - 0 ID=cds-WP_000357259.1;Parent=gene-AD39_RS06465;Dbxref=GenBank:WP_000357259.1;Name=WP_000357259.1;Ontology_term=GO:0019277,GO:0008760;gbkey=CDS;gene=murA;go_function=UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity|0008760||IEA;go_process=UDP-N-acetylgalactosamine biosynthetic process|0019277||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417656.1;locus_tag=AD39_RS06465;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_000357259.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 615761 616015 . - . ID=gene-AD39_RS06460;Name=ibaG;gbkey=Gene;gene=ibaG;gene_biotype=protein_coding;locus_tag=AD39_RS06460;old_locus_tag=AD39_3731 NZ_JJLH01000045.1 Protein Homology CDS 615761 616015 . - 0 ID=cds-WP_000429656.1;Parent=gene-AD39_RS06460;Dbxref=GenBank:WP_000429656.1;Name=WP_000429656.1;gbkey=CDS;gene=ibaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417657.2;locus_tag=AD39_RS06460;product=BolA family iron metabolism protein IbaG;protein_id=WP_000429656.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 616175 616468 . - . ID=gene-AD39_RS06455;Name=mlaB;gbkey=Gene;gene=mlaB;gene_biotype=protein_coding;locus_tag=AD39_RS06455;old_locus_tag=AD39_3732 NZ_JJLH01000045.1 Protein Homology CDS 616175 616468 . - 0 ID=cds-WP_000004488.1;Parent=gene-AD39_RS06455;Dbxref=GenBank:WP_000004488.1;Name=WP_000004488.1;gbkey=CDS;gene=mlaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312097.2;locus_tag=AD39_RS06455;product=lipid asymmetry maintenance protein MlaB;protein_id=WP_000004488.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 616468 617103 . - . ID=gene-AD39_RS06450;Name=mlaC;gbkey=Gene;gene=mlaC;gene_biotype=protein_coding;locus_tag=AD39_RS06450;old_locus_tag=AD39_3733 NZ_JJLH01000045.1 Protein Homology CDS 616468 617103 . - 0 ID=cds-WP_000476487.1;Parent=gene-AD39_RS06450;Dbxref=GenBank:WP_000476487.1;Name=WP_000476487.1;gbkey=CDS;gene=mlaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417659.1;locus_tag=AD39_RS06450;product=phospholipid-binding protein MlaC;protein_id=WP_000476487.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 617122 617673 . - . ID=gene-AD39_RS06445;Name=mlaD;gbkey=Gene;gene=mlaD;gene_biotype=protein_coding;locus_tag=AD39_RS06445;old_locus_tag=AD39_3734 NZ_JJLH01000045.1 Protein Homology CDS 617122 617673 . - 0 ID=cds-WP_001296448.1;Parent=gene-AD39_RS06445;Dbxref=GenBank:WP_001296448.1;Name=WP_001296448.1;Ontology_term=GO:0015914;gbkey=CDS;gene=mlaD;go_process=phospholipid transport|0015914||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312099.1;locus_tag=AD39_RS06445;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=WP_001296448.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 617678 618460 . - . ID=gene-AD39_RS06440;Name=mlaE;gbkey=Gene;gene=mlaE;gene_biotype=protein_coding;locus_tag=AD39_RS06440;old_locus_tag=AD39_3735 NZ_JJLH01000045.1 Protein Homology CDS 617678 618460 . - 0 ID=cds-WP_000925795.1;Parent=gene-AD39_RS06440;Dbxref=GenBank:WP_000925795.1;Name=WP_000925795.1;Ontology_term=GO:0043190;gbkey=CDS;gene=mlaE;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014071945.1;locus_tag=AD39_RS06440;product=lipid asymmetry maintenance ABC transporter permease subunit MlaE;protein_id=WP_000925795.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 618468 619277 . - . ID=gene-AD39_RS06435;Name=mlaF;gbkey=Gene;gene=mlaF;gene_biotype=protein_coding;locus_tag=AD39_RS06435;old_locus_tag=AD39_3736 NZ_JJLH01000045.1 Protein Homology CDS 618468 619277 . - 0 ID=cds-WP_000438245.1;Parent=gene-AD39_RS06435;Dbxref=GenBank:WP_000438245.1;Name=WP_000438245.1;Ontology_term=GO:0005524;gbkey=CDS;gene=mlaF;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312101.1;locus_tag=AD39_RS06435;product=phospholipid ABC transporter ATP-binding protein MlaF;protein_id=WP_000438245.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 619487 620464 . + . ID=gene-AD39_RS06430;Name=yrbG;gbkey=Gene;gene=yrbG;gene_biotype=protein_coding;locus_tag=AD39_RS06430;old_locus_tag=AD39_3737 NZ_JJLH01000045.1 Protein Homology CDS 619487 620464 . + 0 ID=cds-WP_001469381.1;Parent=gene-AD39_RS06430;Dbxref=GenBank:WP_001469381.1;Name=WP_001469381.1;gbkey=CDS;gene=yrbG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417663.1;locus_tag=AD39_RS06430;product=calcium/sodium antiporter;protein_id=WP_001469381.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 620478 621464 . + . ID=gene-AD39_RS06425;Name=kdsD;gbkey=Gene;gene=kdsD;gene_biotype=protein_coding;locus_tag=AD39_RS06425;old_locus_tag=AD39_3738 NZ_JJLH01000045.1 Protein Homology CDS 620478 621464 . + 0 ID=cds-WP_001295557.1;Parent=gene-AD39_RS06425;Dbxref=GenBank:WP_001295557.1;Name=WP_001295557.1;Ontology_term=GO:1901135,GO:0016853,GO:0097367;gbkey=CDS;gene=kdsD;go_function=isomerase activity|0016853||IEA,carbohydrate derivative binding|0097367||IEA;go_process=carbohydrate derivative metabolic process|1901135||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417664.1;locus_tag=AD39_RS06425;product=arabinose-5-phosphate isomerase KdsD;protein_id=WP_001295557.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 621485 622051 . + . ID=gene-AD39_RS06420;Name=kdsC;gbkey=Gene;gene=kdsC;gene_biotype=protein_coding;locus_tag=AD39_RS06420;old_locus_tag=AD39_3739 NZ_JJLH01000045.1 Protein Homology CDS 621485 622051 . + 0 ID=cds-WP_000030016.1;Parent=gene-AD39_RS06420;Dbxref=GenBank:WP_000030016.1;Name=WP_000030016.1;Ontology_term=GO:0016788;gbkey=CDS;gene=kdsC;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708997.1;locus_tag=AD39_RS06420;product=3-deoxy-manno-octulosonate-8-phosphatase KdsC;protein_id=WP_000030016.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 622048 622623 . + . ID=gene-AD39_RS06415;Name=lptC;gbkey=Gene;gene=lptC;gene_biotype=protein_coding;locus_tag=AD39_RS06415;old_locus_tag=AD39_3740 NZ_JJLH01000045.1 Protein Homology CDS 622048 622623 . + 0 ID=cds-WP_000030537.1;Parent=gene-AD39_RS06415;Dbxref=GenBank:WP_000030537.1;Name=WP_000030537.1;gbkey=CDS;gene=lptC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312105.1;locus_tag=AD39_RS06415;product=LPS export ABC transporter periplasmic protein LptC;protein_id=WP_000030537.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 622592 623149 . + . ID=gene-AD39_RS06410;Name=lptA;gbkey=Gene;gene=lptA;gene_biotype=protein_coding;locus_tag=AD39_RS06410;old_locus_tag=AD39_3741 NZ_JJLH01000045.1 Protein Homology CDS 622592 623149 . + 0 ID=cds-WP_000669785.1;Parent=gene-AD39_RS06410;Dbxref=GenBank:WP_000669785.1;Name=WP_000669785.1;gbkey=CDS;gene=lptA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312106.1;locus_tag=AD39_RS06410;product=lipopolysaccharide ABC transporter substrate-binding protein LptA;protein_id=WP_000669785.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 623156 623881 . + . ID=gene-AD39_RS06405;Name=lptB;gbkey=Gene;gene=lptB;gene_biotype=protein_coding;locus_tag=AD39_RS06405;old_locus_tag=AD39_3742 NZ_JJLH01000045.1 Protein Homology CDS 623156 623881 . + 0 ID=cds-WP_000224099.1;Parent=gene-AD39_RS06405;Dbxref=GenBank:WP_000224099.1;Name=WP_000224099.1;Ontology_term=GO:0055085,GO:0005524,GO:0043190;gbkey=CDS;gene=lptB;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003861862.1;locus_tag=AD39_RS06405;product=LPS export ABC transporter ATP-binding protein;protein_id=WP_000224099.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 623929 625362 . + . ID=gene-AD39_RS06400;Name=rpoN;gbkey=Gene;gene=rpoN;gene_biotype=protein_coding;locus_tag=AD39_RS06400;old_locus_tag=AD39_3743 NZ_JJLH01000045.1 Protein Homology CDS 623929 625362 . + 0 ID=cds-WP_001399435.1;Parent=gene-AD39_RS06400;Dbxref=GenBank:WP_001399435.1;Name=WP_001399435.1;Ontology_term=GO:0006352,GO:0001216,GO:0003677,GO:0016987;gbkey=CDS;gene=rpoN;go_function=DNA-binding transcription activator activity|0001216||IEA,DNA binding|0003677||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312108.1;locus_tag=AD39_RS06400;product=RNA polymerase factor sigma-54;protein_id=WP_001399435.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 625385 625672 . + . ID=gene-AD39_RS06395;Name=hpf;gbkey=Gene;gene=hpf;gene_biotype=protein_coding;locus_tag=AD39_RS06395;old_locus_tag=AD39_3744 NZ_JJLH01000045.1 Protein Homology CDS 625385 625672 . + 0 ID=cds-WP_001176599.1;Parent=gene-AD39_RS06395;Dbxref=GenBank:WP_001176599.1;Name=WP_001176599.1;Ontology_term=GO:0044238;gbkey=CDS;gene=hpf;go_process=primary metabolic process|0044238||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312109.1;locus_tag=AD39_RS06395;product=ribosome hibernation promoting factor;protein_id=WP_001176599.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 625790 626281 . + . ID=gene-AD39_RS06390;Name=ptsN;gbkey=Gene;gene=ptsN;gene_biotype=protein_coding;locus_tag=AD39_RS06390;old_locus_tag=AD39_3745 NZ_JJLH01000045.1 Protein Homology CDS 625790 626281 . + 0 ID=cds-WP_000183676.1;Parent=gene-AD39_RS06390;Dbxref=GenBank:WP_000183676.1;Name=WP_000183676.1;gbkey=CDS;gene=ptsN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417671.1;locus_tag=AD39_RS06390;product=PTS IIA-like nitrogen regulatory protein PtsN;protein_id=WP_000183676.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 626327 627181 . + . ID=gene-AD39_RS06385;Name=rapZ;gbkey=Gene;gene=rapZ;gene_biotype=protein_coding;locus_tag=AD39_RS06385;old_locus_tag=AD39_3746 NZ_JJLH01000045.1 Protein Homology CDS 626327 627181 . + 0 ID=cds-WP_001394886.1;Parent=gene-AD39_RS06385;Dbxref=GenBank:WP_001394886.1;Name=WP_001394886.1;Ontology_term=GO:0005524;gbkey=CDS;gene=rapZ;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312111.1;locus_tag=AD39_RS06385;product=RNase adapter RapZ;protein_id=WP_001394886.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 627178 627450 . + . ID=gene-AD39_RS0125255;Name=npr;gbkey=Gene;gene=npr;gene_biotype=protein_coding;locus_tag=AD39_RS0125255;old_locus_tag=AD39_3747 NZ_JJLH01000045.1 Protein Homology CDS 627178 627450 . + 0 ID=cds-WP_000216791.1;Parent=gene-AD39_RS0125255;Dbxref=GenBank:WP_000216791.1;Name=WP_000216791.1;gbkey=CDS;gene=npr;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000216792.1;locus_tag=AD39_RS0125255;product=PTS phosphocarrier protein NPr;protein_id=WP_000216791.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 627664 628296 . + . ID=gene-AD39_RS06380;Name=yrbL;gbkey=Gene;gene=yrbL;gene_biotype=protein_coding;locus_tag=AD39_RS06380;old_locus_tag=AD39_3748 NZ_JJLH01000045.1 Protein Homology CDS 627664 628296 . + 0 ID=cds-WP_000620405.1;Parent=gene-AD39_RS06380;Dbxref=GenBank:WP_000620405.1;Name=WP_000620405.1;gbkey=CDS;gene=yrbL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417674.1;locus_tag=AD39_RS06380;product=PhoP regulatory network protein YrbL;protein_id=WP_000620405.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 628293 629021 . - . ID=gene-AD39_RS06375;Name=mtgA;gbkey=Gene;gene=mtgA;gene_biotype=protein_coding;locus_tag=AD39_RS06375;old_locus_tag=AD39_3749 NZ_JJLH01000045.1 Protein Homology CDS 628293 629021 . - 0 ID=cds-WP_000047091.1;Parent=gene-AD39_RS06375;Dbxref=GenBank:WP_000047091.1;Name=WP_000047091.1;Ontology_term=GO:0009252,GO:0016763,GO:0009274,GO:0016020;gbkey=CDS;gene=mtgA;go_component=peptidoglycan-based cell wall|0009274||IEA,membrane|0016020||IEA;go_function=pentosyltransferase activity|0016763||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417675.1;locus_tag=AD39_RS06375;product=monofunctional biosynthetic peptidoglycan transglycosylase;protein_id=WP_000047091.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 629018 629671 . - . ID=gene-AD39_RS06370;Name=elbB;gbkey=Gene;gene=elbB;gene_biotype=protein_coding;locus_tag=AD39_RS06370;old_locus_tag=AD39_3750 NZ_JJLH01000045.1 Protein Homology CDS 629018 629671 . - 0 ID=cds-WP_001299134.1;Parent=gene-AD39_RS06370;Dbxref=GenBank:WP_001299134.1;Name=WP_001299134.1;gbkey=CDS;gene=elbB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709007.2;locus_tag=AD39_RS06370;product=isoprenoid biosynthesis glyoxalase ElbB;protein_id=WP_001299134.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 629901 632237 . - . ID=gene-AD39_RS06365;Name=arcB;gbkey=Gene;gene=arcB;gene_biotype=protein_coding;locus_tag=AD39_RS06365;old_locus_tag=AD39_3751 NZ_JJLH01000045.1 Protein Homology CDS 629901 632237 . - 0 ID=cds-WP_001364218.1;Parent=gene-AD39_RS06365;Dbxref=GenBank:WP_001364218.1;Name=WP_001364218.1;Ontology_term=GO:0000160,GO:0006355,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=arcB;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709008.1;locus_tag=AD39_RS06365;product=aerobic respiration two-component sensor histidine kinase ArcB;protein_id=WP_001364218.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 632333 633262 . - . ID=gene-AD39_RS06360;Name=yhcC;gbkey=Gene;gene=yhcC;gene_biotype=protein_coding;locus_tag=AD39_RS06360;old_locus_tag=AD39_3752 NZ_JJLH01000045.1 Protein Homology CDS 632333 633262 . - 0 ID=cds-WP_001176896.1;Parent=gene-AD39_RS06360;Dbxref=GenBank:WP_001176896.1;Name=WP_001176896.1;Note=This family includes YhcC from E. coli K-12%2C an uncharacterized radical SAM protein.;Ontology_term=GO:0051536,GO:1904047;gbkey=CDS;gene=yhcC;go_function=iron-sulfur cluster binding|0051536||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312117.1;locus_tag=AD39_RS06360;product=TIGR01212 family radical SAM protein;protein_id=WP_001176896.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 633937 638397 . + . ID=gene-AD39_RS06355;Name=gltB;gbkey=Gene;gene=gltB;gene_biotype=protein_coding;locus_tag=AD39_RS06355;old_locus_tag=AD39_3754 NZ_JJLH01000045.1 Protein Homology CDS 633937 638397 . + 0 ID=cds-WP_001388534.1;Parent=gene-AD39_RS06355;Dbxref=GenBank:WP_001388534.1;Name=WP_001388534.1;Ontology_term=GO:0006537,GO:0008152,GO:0003824,GO:0015930,GO:0016491;gbkey=CDS;gene=gltB;go_function=catalytic activity|0003824||IEA,glutamate synthase activity|0015930||IEA,oxidoreductase activity|0016491||IEA;go_process=glutamate biosynthetic process|0006537||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742510.1;locus_tag=AD39_RS06355;product=glutamate synthase large subunit;protein_id=WP_001388534.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 638410 639828 . + . ID=gene-AD39_RS06350;Name=gltD;gbkey=Gene;gene=gltD;gene_biotype=protein_coding;locus_tag=AD39_RS06350;old_locus_tag=AD39_3755 NZ_JJLH01000045.1 Protein Homology CDS 638410 639828 . + 0 ID=cds-WP_000081677.1;Parent=gene-AD39_RS06350;Dbxref=GenBank:WP_000081677.1;Name=WP_000081677.1;gbkey=CDS;gene=gltD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001540975.1;locus_tag=AD39_RS06350;product=glutamate synthase subunit GltD;protein_id=WP_000081677.1;transl_table=11 NZ_JJLH01000045.1 RefSeq pseudogene 640012 640416 . + . ID=gene-AD39_RS0125260;Name=AD39_RS0125260;end_range=640416,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125260;partial=true;pseudo=true NZ_JJLH01000045.1 Protein Homology CDS 640012 640416 . + 0 ID=cds-AD39_RS0125260;Parent=gene-AD39_RS0125260;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=640416,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417687.1;locus_tag=AD39_RS0125260;partial=true;product=DUF1016 N-terminal domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 640508 640813 . + . ID=gene-AD39_RS0125265;Name=AD39_RS0125265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125265 NZ_JJLH01000045.1 Protein Homology CDS 640508 640813 . + 0 ID=cds-WP_000639208.1;Parent=gene-AD39_RS0125265;Dbxref=GenBank:WP_000639208.1;Name=WP_000639208.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019079601.1;locus_tag=AD39_RS0125265;product=transposase;protein_id=WP_000639208.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 640889 641353 . - . ID=gene-AD39_RS06345;Name=nanQ;gbkey=Gene;gene=nanQ;gene_biotype=protein_coding;locus_tag=AD39_RS06345;old_locus_tag=AD39_3758 NZ_JJLH01000045.1 Protein Homology CDS 640889 641353 . - 0 ID=cds-WP_000979884.1;Parent=gene-AD39_RS06345;Dbxref=GenBank:WP_000979884.1;Name=WP_000979884.1;Ontology_term=GO:0006974;gbkey=CDS;gene=nanQ;go_process=DNA damage response|0006974||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709014.1;locus_tag=AD39_RS06345;product=N-acetylneuraminate anomerase;protein_id=WP_000979884.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 641350 642225 . - . ID=gene-AD39_RS06340;Name=nanK;gbkey=Gene;gene=nanK;gene_biotype=protein_coding;locus_tag=AD39_RS06340;old_locus_tag=AD39_3759 NZ_JJLH01000045.1 Protein Homology CDS 641350 642225 . - 0 ID=cds-WP_000209003.1;Parent=gene-AD39_RS06340;Dbxref=GenBank:WP_000209003.1;Name=WP_000209003.1;Ontology_term=GO:0019262,GO:0005524,GO:0009384;gbkey=CDS;gene=nanK;go_function=ATP binding|0005524||IEA,N-acylmannosamine kinase activity|0009384||IEA;go_process=N-acetylneuraminate catabolic process|0019262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312122.2;locus_tag=AD39_RS06340;product=N-acetylmannosamine kinase;protein_id=WP_000209003.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 642222 642911 . - . ID=gene-AD39_RS06335;Name=nanE;gbkey=Gene;gene=nanE;gene_biotype=protein_coding;locus_tag=AD39_RS06335;old_locus_tag=AD39_3760 NZ_JJLH01000045.1 Protein Homology CDS 642222 642911 . - 0 ID=cds-WP_000054239.1;Parent=gene-AD39_RS06335;Dbxref=GenBank:WP_000054239.1;Name=WP_000054239.1;Ontology_term=GO:0005975,GO:0006051,GO:0019262,GO:0047465;gbkey=CDS;gene=nanE;go_function=N-acylglucosamine-6-phosphate 2-epimerase activity|0047465||IEA;go_process=carbohydrate metabolic process|0005975||IEA,N-acetylmannosamine metabolic process|0006051||IEA,N-acetylneuraminate catabolic process|0019262||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417690.1;locus_tag=AD39_RS06335;product=N-acetylmannosamine-6-phosphate 2-epimerase;protein_id=WP_000054239.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 642959 644449 . - . ID=gene-AD39_RS06330;Name=nanT;gbkey=Gene;gene=nanT;gene_biotype=protein_coding;locus_tag=AD39_RS06330;old_locus_tag=AD39_3761 NZ_JJLH01000045.1 Protein Homology CDS 642959 644449 . - 0 ID=cds-WP_000108459.1;Parent=gene-AD39_RS06330;Dbxref=GenBank:WP_000108459.1;Name=WP_000108459.1;gbkey=CDS;gene=nanT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312124.2;locus_tag=AD39_RS06330;product=sialic acid transporter NanT;protein_id=WP_000108459.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 644559 645452 . - . ID=gene-AD39_RS06325;Name=nanA;gbkey=Gene;gene=nanA;gene_biotype=protein_coding;locus_tag=AD39_RS06325;old_locus_tag=AD39_3762 NZ_JJLH01000045.1 Protein Homology CDS 644559 645452 . - 0 ID=cds-WP_000224714.1;Parent=gene-AD39_RS06325;Dbxref=GenBank:WP_000224714.1;Name=WP_000224714.1;Ontology_term=GO:0005975,GO:0008747;gbkey=CDS;gene=nanA;go_function=N-acetylneuraminate lyase activity|0008747||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312125.1;locus_tag=AD39_RS06325;product=N-acetylneuraminate lyase;protein_id=WP_000224714.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 645574 646365 . - . ID=gene-AD39_RS06320;Name=nanR;gbkey=Gene;gene=nanR;gene_biotype=protein_coding;locus_tag=AD39_RS06320;old_locus_tag=AD39_3763 NZ_JJLH01000045.1 Protein Homology CDS 645574 646365 . - 0 ID=cds-WP_000523844.1;Parent=gene-AD39_RS06320;Dbxref=GenBank:WP_000523844.1;Name=WP_000523844.1;gbkey=CDS;gene=nanR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312126.3;locus_tag=AD39_RS06320;product=transcriptional regulator NanR;protein_id=WP_000523844.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 646745 648112 . + . ID=gene-AD39_RS06315;Name=dcuC;gbkey=Gene;gene=dcuC;gene_biotype=protein_coding;locus_tag=AD39_RS06315;old_locus_tag=AD39_3764 NZ_JJLH01000045.1 Protein Homology CDS 646745 648112 . + 0 ID=cds-WP_000466976.1;Parent=gene-AD39_RS06315;Dbxref=GenBank:WP_000466976.1;Name=WP_000466976.1;gbkey=CDS;gene=dcuC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417694.1;locus_tag=AD39_RS06315;product=anaerobic C4-dicarboxylate transporter DcuC;protein_id=WP_000466976.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 648155 648652 . - . ID=gene-AD39_RS06310;Name=sspB;gbkey=Gene;gene=sspB;gene_biotype=protein_coding;locus_tag=AD39_RS06310;old_locus_tag=AD39_3765 NZ_JJLH01000045.1 Protein Homology CDS 648155 648652 . - 0 ID=cds-WP_000366129.1;Parent=gene-AD39_RS06310;Dbxref=GenBank:WP_000366129.1;Name=WP_000366129.1;gbkey=CDS;gene=sspB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312128.1;locus_tag=AD39_RS06310;product=ClpXP protease specificity-enhancing factor;protein_id=WP_000366129.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 648658 649296 . - . ID=gene-AD39_RS06305;Name=sspA;gbkey=Gene;gene=sspA;gene_biotype=protein_coding;locus_tag=AD39_RS06305;old_locus_tag=AD39_3766 NZ_JJLH01000045.1 Protein Homology CDS 648658 649296 . - 0 ID=cds-WP_000257293.1;Parent=gene-AD39_RS06305;Dbxref=GenBank:WP_000257293.1;Name=WP_000257293.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;gene=sspA;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312129.1;locus_tag=AD39_RS06305;product=stringent starvation protein SspA;protein_id=WP_000257293.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 649691 650083 . - . ID=gene-AD39_RS06300;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;locus_tag=AD39_RS06300;old_locus_tag=AD39_3767 NZ_JJLH01000045.1 Protein Homology CDS 649691 650083 . - 0 ID=cds-WP_000829818.1;Parent=gene-AD39_RS06300;Dbxref=GenBank:WP_000829818.1;Name=WP_000829818.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000829824.1;locus_tag=AD39_RS06300;product=30S ribosomal protein S9;protein_id=WP_000829818.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 650099 650527 . - . ID=gene-AD39_RS06295;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;locus_tag=AD39_RS06295;old_locus_tag=AD39_3768 NZ_JJLH01000045.1 Protein Homology CDS 650099 650527 . - 0 ID=cds-WP_000847559.1;Parent=gene-AD39_RS06295;Dbxref=GenBank:WP_000847559.1;Name=WP_000847559.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplM;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010847760.1;locus_tag=AD39_RS06295;product=50S ribosomal protein L13;protein_id=WP_000847559.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 650746 651873 . - . ID=gene-AD39_RS06290;Name=zapE;gbkey=Gene;gene=zapE;gene_biotype=protein_coding;locus_tag=AD39_RS06290;old_locus_tag=AD39_3769 NZ_JJLH01000045.1 Protein Homology CDS 650746 651873 . - 0 ID=cds-WP_001192307.1;Parent=gene-AD39_RS06290;Dbxref=GenBank:WP_001192307.1;Name=WP_001192307.1;Ontology_term=GO:0051301,GO:0005524,GO:0016887;gbkey=CDS;gene=zapE;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312132.1;locus_tag=AD39_RS06290;product=cell division protein ZapE;protein_id=WP_001192307.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 652067 652465 . + . ID=gene-AD39_RS06285;Name=zapG;gbkey=Gene;gene=zapG;gene_biotype=protein_coding;locus_tag=AD39_RS06285;old_locus_tag=AD39_3770 NZ_JJLH01000045.1 Protein Homology CDS 652067 652465 . + 0 ID=cds-WP_001295270.1;Parent=gene-AD39_RS06285;Dbxref=GenBank:WP_001295270.1;Name=WP_001295270.1;gbkey=CDS;gene=zapG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121352.1;locus_tag=AD39_RS06285;product=Z-ring associated protein ZapG;protein_id=WP_001295270.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 652619 653986 . + . ID=gene-AD39_RS06280;Name=degQ;gbkey=Gene;gene=degQ;gene_biotype=protein_coding;locus_tag=AD39_RS06280;old_locus_tag=AD39_3771 NZ_JJLH01000045.1 Protein Homology CDS 652619 653986 . + 0 ID=cds-WP_001295271.1;Parent=gene-AD39_RS06280;Dbxref=GenBank:WP_001295271.1;Name=WP_001295271.1;Ontology_term=GO:0006508,GO:0004252,GO:0005515;gbkey=CDS;gene=degQ;go_function=serine-type endopeptidase activity|0004252||IEA,protein binding|0005515||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417701.1;locus_tag=AD39_RS06280;product=serine endoprotease DegQ;protein_id=WP_001295271.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 654076 655143 . + . ID=gene-AD39_RS06275;Name=degS;gbkey=Gene;gene=degS;gene_biotype=protein_coding;locus_tag=AD39_RS06275;old_locus_tag=AD39_3772 NZ_JJLH01000045.1 Protein Homology CDS 654076 655143 . + 0 ID=cds-WP_000497723.1;Parent=gene-AD39_RS06275;Dbxref=GenBank:WP_000497723.1;Name=WP_000497723.1;Ontology_term=GO:0006508,GO:0004252;gbkey=CDS;gene=degS;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312135.1;locus_tag=AD39_RS06275;product=outer membrane-stress sensor serine endopeptidase DegS;protein_id=WP_000497723.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 655206 656144 . - . ID=gene-AD39_RS06270;Name=mdh;gbkey=Gene;gene=mdh;gene_biotype=protein_coding;locus_tag=AD39_RS06270;old_locus_tag=AD39_3773 NZ_JJLH01000045.1 Protein Homology CDS 655206 656144 . - 0 ID=cds-WP_001297453.1;Parent=gene-AD39_RS06270;Dbxref=GenBank:WP_001297453.1;Name=WP_001297453.1;Ontology_term=GO:0006099,GO:0030060;gbkey=CDS;gene=mdh;go_function=L-malate dehydrogenase (NAD+) activity|0030060||IEA;go_process=tricarboxylic acid cycle|0006099||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000861594.1;locus_tag=AD39_RS06270;product=malate dehydrogenase;protein_id=WP_001297453.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 656579 657049 . + . ID=gene-AD39_RS06265;Name=argR;gbkey=Gene;gene=argR;gene_biotype=protein_coding;locus_tag=AD39_RS06265;old_locus_tag=AD39_3774 NZ_JJLH01000045.1 Protein Homology CDS 656579 657049 . + 0 ID=cds-WP_001257846.1;Parent=gene-AD39_RS06265;Dbxref=GenBank:WP_001257846.1;Name=WP_001257846.1;gbkey=CDS;gene=argR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001257852.1;locus_tag=AD39_RS06265;product=transcriptional regulator ArgR;protein_id=WP_001257846.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 657414 657677 . + . ID=gene-AD39_RS06260;Name=yhcN;gbkey=Gene;gene=yhcN;gene_biotype=protein_coding;locus_tag=AD39_RS06260;old_locus_tag=AD39_3775 NZ_JJLH01000045.1 Protein Homology CDS 657414 657677 . + 0 ID=cds-WP_000695690.1;Parent=gene-AD39_RS06260;Dbxref=GenBank:WP_000695690.1;Name=WP_000695690.1;gbkey=CDS;gene=yhcN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417705.2;locus_tag=AD39_RS06260;product=peroxide/acid stress response protein YhcN;protein_id=WP_000695690.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 657733 658005 . - . ID=gene-AD39_RS06255;Name=yhcO;gbkey=Gene;gene=yhcO;gene_biotype=protein_coding;locus_tag=AD39_RS06255;old_locus_tag=AD39_3776 NZ_JJLH01000045.1 Protein Homology CDS 657733 658005 . - 0 ID=cds-WP_001029013.1;Parent=gene-AD39_RS06255;Dbxref=GenBank:WP_001029013.1;Name=WP_001029013.1;gbkey=CDS;gene=yhcO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312139.1;locus_tag=AD39_RS06255;product=barstar family protein;protein_id=WP_001029013.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 658097 660064 . - . ID=gene-AD39_RS06250;Name=aaeB;gbkey=Gene;gene=aaeB;gene_biotype=protein_coding;locus_tag=AD39_RS06250;old_locus_tag=AD39_3777 NZ_JJLH01000045.1 Protein Homology CDS 658097 660064 . - 0 ID=cds-WP_000510962.1;Parent=gene-AD39_RS06250;Dbxref=GenBank:WP_000510962.1;Name=WP_000510962.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=aaeB;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709037.1;locus_tag=AD39_RS06250;product=p-hydroxybenzoic acid efflux pump subunit AaeB;protein_id=WP_000510962.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 660070 661002 . - . ID=gene-AD39_RS06245;Name=aaeA;gbkey=Gene;gene=aaeA;gene_biotype=protein_coding;locus_tag=AD39_RS06245;old_locus_tag=AD39_3778 NZ_JJLH01000045.1 Protein Homology CDS 660070 661002 . - 0 ID=cds-WP_000854033.1;Parent=gene-AD39_RS06245;Dbxref=GenBank:WP_000854033.1;Name=WP_000854033.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=aaeA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417708.1;locus_tag=AD39_RS06245;product=p-hydroxybenzoic acid efflux pump subunit AaeA;protein_id=WP_000854033.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 661010 661213 . - . ID=gene-AD39_RS06240;Name=aaeX;gbkey=Gene;gene=aaeX;gene_biotype=protein_coding;locus_tag=AD39_RS06240;old_locus_tag=AD39_3779 NZ_JJLH01000045.1 Protein Homology CDS 661010 661213 . - 0 ID=cds-WP_000051841.1;Parent=gene-AD39_RS06240;Dbxref=GenBank:WP_000051841.1;Name=WP_000051841.1;gbkey=CDS;gene=aaeX;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000051842.1;locus_tag=AD39_RS06240;product=p-hydroxybenzoic acid efflux pump operon protein AaeX;protein_id=WP_000051841.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 661396 662325 . + . ID=gene-AD39_RS06235;Name=aaeR;gbkey=Gene;gene=aaeR;gene_biotype=protein_coding;locus_tag=AD39_RS06235;old_locus_tag=AD39_3780 NZ_JJLH01000045.1 Protein Homology CDS 661396 662325 . + 0 ID=cds-WP_024171825.1;Parent=gene-AD39_RS06235;Dbxref=GenBank:WP_024171825.1;Name=WP_024171825.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=aaeR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312143.1;locus_tag=AD39_RS06235;product=HTH-type transcriptional activator AaeR;protein_id=WP_024171825.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 662453 663898 . - . ID=gene-AD39_RS06230;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=AD39_RS06230;old_locus_tag=AD39_3781 NZ_JJLH01000045.1 Protein Homology CDS 662453 663898 . - 0 ID=cds-WP_000055909.1;Parent=gene-AD39_RS06230;Dbxref=GenBank:WP_000055909.1;Name=WP_000055909.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=tldD;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417711.1;locus_tag=AD39_RS06230;product=metalloprotease TldD;protein_id=WP_000055909.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 664054 667854 . - . ID=gene-AD39_RS06225;Name=yhdP;gbkey=Gene;gene=yhdP;gene_biotype=protein_coding;locus_tag=AD39_RS06225;old_locus_tag=AD39_3782 NZ_JJLH01000045.1 Protein Homology CDS 664054 667854 . - 0 ID=cds-WP_032286121.1;Parent=gene-AD39_RS06225;Dbxref=GenBank:WP_032286121.1;Name=WP_032286121.1;gbkey=CDS;gene=yhdP;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026208.1;locus_tag=AD39_RS06225;product=AsmA2 domain-containing protein YhdP;protein_id=WP_032286121.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 667922 669391 . - . ID=gene-AD39_RS06220;Name=rng;gbkey=Gene;gene=rng;gene_biotype=protein_coding;locus_tag=AD39_RS06220;old_locus_tag=AD39_3783 NZ_JJLH01000045.1 Protein Homology CDS 667922 669391 . - 0 ID=cds-WP_000123197.1;Parent=gene-AD39_RS06220;Dbxref=GenBank:WP_000123197.1;Name=WP_000123197.1;Ontology_term=GO:0006396,GO:0003723,GO:0004540;gbkey=CDS;gene=rng;go_function=RNA binding|0003723||IEA,RNA nuclease activity|0004540||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006818051.1;locus_tag=AD39_RS06220;product=ribonuclease G;protein_id=WP_000123197.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 669381 669974 . - . ID=gene-AD39_RS06215;Name=yhdE;gbkey=Gene;gene=yhdE;gene_biotype=protein_coding;locus_tag=AD39_RS06215;old_locus_tag=AD39_3784 NZ_JJLH01000045.1 Protein Homology CDS 669381 669974 . - 0 ID=cds-WP_000203096.1;Parent=gene-AD39_RS06215;Dbxref=GenBank:WP_000203096.1;Name=WP_000203096.1;gbkey=CDS;gene=yhdE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709043.1;locus_tag=AD39_RS06215;product=nucleoside triphosphate pyrophosphatase YhdE;protein_id=WP_000203096.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 669983 670471 . - . ID=gene-AD39_RS06210;Name=mreD;gbkey=Gene;gene=mreD;gene_biotype=protein_coding;locus_tag=AD39_RS06210;old_locus_tag=AD39_3785 NZ_JJLH01000045.1 Protein Homology CDS 669983 670471 . - 0 ID=cds-WP_001397845.1;Parent=gene-AD39_RS06210;Dbxref=GenBank:WP_001397845.1;Name=WP_001397845.1;gbkey=CDS;gene=mreD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001487551.1;locus_tag=AD39_RS06210;product=rod shape-determining protein MreD;protein_id=WP_001397845.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 670471 671574 . - . ID=gene-AD39_RS06205;Name=mreC;gbkey=Gene;gene=mreC;gene_biotype=protein_coding;locus_tag=AD39_RS06205;old_locus_tag=AD39_3786 NZ_JJLH01000045.1 Protein Homology CDS 670471 671574 . - 0 ID=cds-WP_000802516.1;Parent=gene-AD39_RS06205;Dbxref=GenBank:WP_000802516.1;Name=WP_000802516.1;Ontology_term=GO:0008360;gbkey=CDS;gene=mreC;go_process=regulation of cell shape|0008360||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312149.1;locus_tag=AD39_RS06205;product=rod shape-determining protein MreC;protein_id=WP_000802516.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 671640 672683 . - . ID=gene-AD39_RS06200;Name=mreB;gbkey=Gene;gene=mreB;gene_biotype=protein_coding;locus_tag=AD39_RS06200;old_locus_tag=AD39_3787 NZ_JJLH01000045.1 Protein Homology CDS 671640 672683 . - 0 ID=cds-WP_000913396.1;Parent=gene-AD39_RS06200;Dbxref=GenBank:WP_000913396.1;Name=WP_000913396.1;gbkey=CDS;gene=mreB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000913396.1;locus_tag=AD39_RS06200;product=rod shape-determining protein MreB;protein_id=WP_000913396.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 672988 674928 . - . ID=gene-AD39_RS06195;Name=csrD;gbkey=Gene;gene=csrD;gene_biotype=protein_coding;locus_tag=AD39_RS06195;old_locus_tag=AD39_3788 NZ_JJLH01000045.1 Protein Homology CDS 672988 674928 . - 0 ID=cds-WP_001241436.1;Parent=gene-AD39_RS06195;Dbxref=GenBank:WP_001241436.1;Name=WP_001241436.1;gbkey=CDS;gene=csrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417718.1;locus_tag=AD39_RS06195;product=RNase E specificity factor CsrD;protein_id=WP_001241436.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 675080 676054 . + . ID=gene-AD39_RS06190;Name=yhdH;gbkey=Gene;gene=yhdH;gene_biotype=protein_coding;locus_tag=AD39_RS06190;old_locus_tag=AD39_3789 NZ_JJLH01000045.1 Protein Homology CDS 675080 676054 . + 0 ID=cds-WP_001148478.1;Parent=gene-AD39_RS06190;Dbxref=GenBank:WP_001148478.1;Name=WP_001148478.1;Ontology_term=GO:0004022,GO:0008270,GO:0030554;gbkey=CDS;gene=yhdH;go_function=alcohol dehydrogenase (NAD+) activity|0004022||IEA,zinc ion binding|0008270||IEA,adenyl nucleotide binding|0030554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312152.1;locus_tag=AD39_RS06190;product=MDR family oxidoreductase;protein_id=WP_001148478.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 676091 676921 . + . ID=gene-AD39_RS06185;Name=AD39_RS06185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS06185;old_locus_tag=AD39_3790 NZ_JJLH01000045.1 Protein Homology CDS 676091 676921 . + 0 ID=cds-WP_032283542.1;Parent=gene-AD39_RS06185;Dbxref=GenBank:WP_032283542.1;Name=WP_032283542.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000838295.1;locus_tag=AD39_RS06185;product=hypothetical protein;protein_id=WP_032283542.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 677787 678257 . + . ID=gene-AD39_RS06180;Name=accB;gbkey=Gene;gene=accB;gene_biotype=protein_coding;locus_tag=AD39_RS06180;old_locus_tag=AD39_3791 NZ_JJLH01000045.1 Protein Homology CDS 677787 678257 . + 0 ID=cds-WP_000354622.1;Parent=gene-AD39_RS06180;Dbxref=GenBank:WP_000354622.1;Name=WP_000354622.1;Ontology_term=GO:0006633,GO:0003989,GO:0009317;gbkey=CDS;gene=accB;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=acetyl-CoA carboxylase activity|0003989||IEA;go_process=fatty acid biosynthetic process|0006633||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312154.1;locus_tag=AD39_RS06180;product=acetyl-CoA carboxylase biotin carboxyl carrier protein;protein_id=WP_000354622.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 678268 679617 . + . ID=gene-AD39_RS06175;Name=accC;gbkey=Gene;gene=accC;gene_biotype=protein_coding;locus_tag=AD39_RS06175;old_locus_tag=AD39_3792 NZ_JJLH01000045.1 Protein Homology CDS 678268 679617 . + 0 ID=cds-WP_023155575.1;Parent=gene-AD39_RS06175;Dbxref=GenBank:WP_023155575.1;Name=WP_023155575.1;Ontology_term=GO:0004075,GO:0016874,GO:0009317;gbkey=CDS;gene=accC;go_component=acetyl-CoA carboxylase complex|0009317||IEA;go_function=biotin carboxylase activity|0004075||IEA,ligase activity|0016874||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_009483995.1;locus_tag=AD39_RS06175;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=WP_023155575.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 679726 679968 . + . ID=gene-AD39_RS06170;Name=yhdT;gbkey=Gene;gene=yhdT;gene_biotype=protein_coding;locus_tag=AD39_RS06170;old_locus_tag=AD39_3793 NZ_JJLH01000045.1 Protein Homology CDS 679726 679968 . + 0 ID=cds-WP_023155574.1;Parent=gene-AD39_RS06170;Dbxref=GenBank:WP_023155574.1;Name=WP_023155574.1;gbkey=CDS;gene=yhdT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312156.1;locus_tag=AD39_RS06170;product=YhdT family protein;protein_id=WP_023155574.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 679958 681409 . + . ID=gene-AD39_RS06165;Name=panF;gbkey=Gene;gene=panF;gene_biotype=protein_coding;locus_tag=AD39_RS06165;old_locus_tag=AD39_3794 NZ_JJLH01000045.1 Protein Homology CDS 679958 681409 . + 0 ID=cds-WP_001428262.1;Parent=gene-AD39_RS06165;Dbxref=GenBank:WP_001428262.1;Name=WP_001428262.1;Ontology_term=GO:0015887,GO:0036376,GO:0015081,GO:0015233,GO:0016020;gbkey=CDS;gene=panF;go_component=membrane|0016020||IEA;go_function=sodium ion transmembrane transporter activity|0015081||IEA,pantothenate transmembrane transporter activity|0015233||IEA;go_process=pantothenate transmembrane transport|0015887||IEA,sodium ion export across plasma membrane|0036376||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312157.2;locus_tag=AD39_RS06165;product=sodium/pantothenate symporter;protein_id=WP_001428262.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 681421 682302 . + . ID=gene-AD39_RS06160;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=AD39_RS06160;old_locus_tag=AD39_3795 NZ_JJLH01000045.1 Protein Homology CDS 681421 682302 . + 0 ID=cds-WP_001145827.1;Parent=gene-AD39_RS06160;Dbxref=GenBank:WP_001145827.1;Name=WP_001145827.1;Ontology_term=GO:0036211,GO:0008757;gbkey=CDS;gene=prmA;go_function=S-adenosylmethionine-dependent methyltransferase activity|0008757||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312158.1;locus_tag=AD39_RS06160;product=50S ribosomal protein L11 methyltransferase;protein_id=WP_001145827.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 682631 683596 . + . ID=gene-AD39_RS06155;Name=dusB;gbkey=Gene;gene=dusB;gene_biotype=protein_coding;locus_tag=AD39_RS06155;old_locus_tag=AD39_3796 NZ_JJLH01000045.1 Protein Homology CDS 682631 683596 . + 0 ID=cds-WP_001219652.1;Parent=gene-AD39_RS06155;Dbxref=GenBank:WP_001219652.1;Name=WP_001219652.1;Ontology_term=GO:0008033,GO:0017150,GO:0050660;gbkey=CDS;gene=dusB;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008785970.1;locus_tag=AD39_RS06155;product=tRNA dihydrouridine synthase DusB;protein_id=WP_001219652.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 683622 683918 . + . ID=gene-AD39_RS06150;Name=fis;gbkey=Gene;gene=fis;gene_biotype=protein_coding;locus_tag=AD39_RS06150;old_locus_tag=AD39_3797 NZ_JJLH01000045.1 Protein Homology CDS 683622 683918 . + 0 ID=cds-WP_000462905.1;Parent=gene-AD39_RS06150;Dbxref=GenBank:WP_000462905.1;Name=WP_000462905.1;gbkey=CDS;gene=fis;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001465625.1;locus_tag=AD39_RS06150;product=DNA-binding transcriptional regulator Fis;protein_id=WP_000462905.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 684004 684888 . + . ID=gene-AD39_RS06145;Name=yhdJ;gbkey=Gene;gene=yhdJ;gene_biotype=protein_coding;locus_tag=AD39_RS06145;old_locus_tag=AD39_3798 NZ_JJLH01000045.1 Protein Homology CDS 684004 684888 . + 0 ID=cds-WP_001258917.1;Parent=gene-AD39_RS06145;Dbxref=GenBank:WP_001258917.1;Name=WP_001258917.1;Ontology_term=GO:0003677,GO:0008170;gbkey=CDS;gene=yhdJ;go_function=DNA binding|0003677||IEA,N-methyltransferase activity|0008170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312161.2;locus_tag=AD39_RS06145;product=adenine-specific DNA-methyltransferase;protein_id=WP_001258917.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 684972 685151 . + . ID=gene-AD39_RS0125285;Name=yhdU;gbkey=Gene;gene=yhdU;gene_biotype=protein_coding;locus_tag=AD39_RS0125285 NZ_JJLH01000045.1 Protein Homology CDS 684972 685151 . + 0 ID=cds-WP_001295275.1;Parent=gene-AD39_RS0125285;Dbxref=GenBank:WP_001295275.1;Name=WP_001295275.1;gbkey=CDS;gene=yhdU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312162.1;locus_tag=AD39_RS0125285;product=DUF2556 family protein;protein_id=WP_001295275.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 685154 685816 . - . ID=gene-AD39_RS06140;Name=acrS;gbkey=Gene;gene=acrS;gene_biotype=protein_coding;locus_tag=AD39_RS06140;old_locus_tag=AD39_3800 NZ_JJLH01000045.1 Protein Homology CDS 685154 685816 . - 0 ID=cds-WP_001129518.1;Parent=gene-AD39_RS06140;Dbxref=GenBank:WP_001129518.1;Name=WP_001129518.1;gbkey=CDS;gene=acrS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312163.1;locus_tag=AD39_RS06140;product=multidrug efflux transporter transcriptional repressor AcrS;protein_id=WP_001129518.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 686215 687372 . + . ID=gene-AD39_RS06135;Name=acrE;gbkey=Gene;gene=acrE;gene_biotype=protein_coding;locus_tag=AD39_RS06135;old_locus_tag=AD39_3801 NZ_JJLH01000045.1 Protein Homology CDS 686215 687372 . + 0 ID=cds-WP_000160334.1;Parent=gene-AD39_RS06135;Dbxref=GenBank:WP_000160334.1;Name=WP_000160334.1;gbkey=CDS;gene=acrE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417731.1;locus_tag=AD39_RS06135;product=multidrug efflux RND transporter periplasmic adaptor subunit AcrE;protein_id=WP_000160334.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 687384 690488 . + . ID=gene-AD39_RS06130;Name=acrF;gbkey=Gene;gene=acrF;gene_biotype=protein_coding;locus_tag=AD39_RS06130;old_locus_tag=AD39_3802 NZ_JJLH01000045.1 Protein Homology CDS 687384 690488 . + 0 ID=cds-WP_001273221.1;Parent=gene-AD39_RS06130;Dbxref=GenBank:WP_001273221.1;Name=WP_001273221.1;gbkey=CDS;gene=acrF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417732.1;locus_tag=AD39_RS06130;product=multidrug efflux RND transporter permease subunit AcrF;protein_id=WP_001273221.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 690741 690962 . + . ID=gene-AD39_RS06125;Name=AD39_RS06125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS06125;old_locus_tag=AD39_3803 NZ_JJLH01000045.1 Protein Homology CDS 690741 690962 . + 0 ID=cds-WP_000825639.1;Parent=gene-AD39_RS06125;Dbxref=GenBank:WP_000825639.1;Name=WP_000825639.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312167.1;locus_tag=AD39_RS06125;product=membrane protein;protein_id=WP_000825639.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 691393 692418 . + . ID=gene-AD39_RS06120;Name=AD39_RS06120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS06120;old_locus_tag=AD39_3805 NZ_JJLH01000045.1 Protein Homology CDS 691393 692418 . + 0 ID=cds-WP_032283544.1;Parent=gene-AD39_RS06120;Dbxref=GenBank:WP_032283544.1;Name=WP_032283544.1;Ontology_term=GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121390.1;locus_tag=AD39_RS06120;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_032283544.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 692486 693667 . + . ID=gene-AD39_RS06115;Name=yhdX;gbkey=Gene;gene=yhdX;gene_biotype=protein_coding;locus_tag=AD39_RS06115;old_locus_tag=AD39_3806 NZ_JJLH01000045.1 Protein Homology CDS 692486 693667 . + 0 ID=cds-WP_000019655.1;Parent=gene-AD39_RS06115;Dbxref=GenBank:WP_000019655.1;Name=WP_000019655.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359,GO:0016020,GO:0043190;gbkey=CDS;gene=yhdX;go_component=membrane|0016020||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026209.1;locus_tag=AD39_RS06115;product=amino acid ABC transporter permease;protein_id=WP_000019655.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 693677 694780 . + . ID=gene-AD39_RS06110;Name=yhdY;gbkey=Gene;gene=yhdY;gene_biotype=protein_coding;locus_tag=AD39_RS06110;old_locus_tag=AD39_3807 NZ_JJLH01000045.1 Protein Homology CDS 693677 694780 . + 0 ID=cds-WP_001297685.1;Parent=gene-AD39_RS06110;Dbxref=GenBank:WP_001297685.1;Name=WP_001297685.1;Ontology_term=GO:0006865,GO:0042626,GO:0140359;gbkey=CDS;gene=yhdY;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709065.2;locus_tag=AD39_RS06110;product=amino acid ABC transporter permease;protein_id=WP_001297685.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 694788 695546 . + . ID=gene-AD39_RS06105;Name=yhdZ;gbkey=Gene;gene=yhdZ;gene_biotype=protein_coding;locus_tag=AD39_RS06105;old_locus_tag=AD39_3808 NZ_JJLH01000045.1 Protein Homology CDS 694788 695546 . + 0 ID=cds-WP_032287623.1;Parent=gene-AD39_RS06105;Dbxref=GenBank:WP_032287623.1;Name=WP_032287623.1;Ontology_term=GO:0005524,GO:0015424,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;gene=yhdZ;go_function=ATP binding|0005524||IEA,ABC-type amino acid transporter activity|0015424||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312171.1;locus_tag=AD39_RS06105;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_032287623.1;transl_table=11 NZ_JJLH01000045.1 RefSeq gene 695777 695892 . - . ID=gene-AD39_RS06100;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=AD39_RS06100;old_locus_tag=AD39_3809 NZ_JJLH01000045.1 cmsearch rRNA 695777 695892 . - . ID=rna-AD39_RS06100;Parent=gene-AD39_RS06100;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS06100;product=5S ribosomal RNA NZ_JJLH01000045.1 cmsearch exon 695777 695892 . - . ID=exon-AD39_RS06100-1;Parent=rna-AD39_RS06100;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS06100;product=5S ribosomal RNA NZ_JJLH01000045.1 RefSeq gene 695932 696007 . - . ID=gene-AD39_RS06095;Name=AD39_RS06095;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS06095;old_locus_tag=AD39_3810 NZ_JJLH01000045.1 tRNAscan-SE tRNA 695932 696007 . - . ID=rna-AD39_RS06095;Parent=gene-AD39_RS06095;anticodon=(pos:complement(695972..695974));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS06095;product=tRNA-Thr NZ_JJLH01000045.1 tRNAscan-SE exon 695932 696007 . - . ID=exon-AD39_RS06095-1;Parent=rna-AD39_RS06095;anticodon=(pos:complement(695972..695974));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS06095;product=tRNA-Thr NZ_JJLH01000045.1 RefSeq gene 696022 696137 . - . ID=gene-AD39_RS06090;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=AD39_RS06090;old_locus_tag=AD39_3811 NZ_JJLH01000045.1 cmsearch rRNA 696022 696137 . - . ID=rna-AD39_RS06090;Parent=gene-AD39_RS06090;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS06090;product=5S ribosomal RNA NZ_JJLH01000045.1 cmsearch exon 696022 696137 . - . ID=exon-AD39_RS06090-1;Parent=rna-AD39_RS06090;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS06090;product=5S ribosomal RNA NZ_JJLH01000045.1 RefSeq gene 696177 696252 . - . ID=gene-AD39_RS06085;Name=AD39_RS06085;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS06085;old_locus_tag=AD39_3812 NZ_JJLH01000045.1 tRNAscan-SE tRNA 696177 696252 . - . ID=rna-AD39_RS06085;Parent=gene-AD39_RS06085;anticodon=(pos:complement(696217..696219));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS06085;product=tRNA-Thr NZ_JJLH01000045.1 tRNAscan-SE exon 696177 696252 . - . ID=exon-AD39_RS06085-1;Parent=rna-AD39_RS06085;anticodon=(pos:complement(696217..696219));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS06085;product=tRNA-Thr NZ_JJLH01000045.1 RefSeq gene 696267 696382 . - . ID=gene-AD39_RS06080;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=AD39_RS06080;old_locus_tag=AD39_3813 NZ_JJLH01000045.1 cmsearch rRNA 696267 696382 . - . ID=rna-AD39_RS06080;Parent=gene-AD39_RS06080;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS06080;product=5S ribosomal RNA NZ_JJLH01000045.1 cmsearch exon 696267 696382 . - . ID=exon-AD39_RS06080-1;Parent=rna-AD39_RS06080;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS06080;product=5S ribosomal RNA NZ_JJLH01000045.1 RefSeq gene 696478 697628 . - . ID=gene-AD39_RS06075;Name=AD39_RS06075;end_range=697628,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS06075;old_locus_tag=AD39_3814;partial=true NZ_JJLH01000045.1 cmsearch rRNA 696478 697628 . - . ID=rna-AD39_RS06075;Parent=gene-AD39_RS06075;Dbxref=RFAM:RF02541;end_range=697628,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS06075;partial=true;product=23S ribosomal RNA NZ_JJLH01000045.1 cmsearch exon 696478 697628 . - . ID=exon-AD39_RS06075-1;Parent=rna-AD39_RS06075;Dbxref=RFAM:RF02541;end_range=697628,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS06075;partial=true;product=23S ribosomal RNA ##sequence-region NZ_JJLH01000046.1 1 1949 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000046.1 RefSeq region 1 1949 . + . ID=NZ_JJLH01000046.1:1..1949;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000046.1 RefSeq gene 1 1949 . - . ID=gene-AD39_RS0125325;Name=AD39_RS0125325;end_range=1949,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0125325;partial=true;start_range=.,1 NZ_JJLH01000046.1 cmsearch rRNA 1 1949 . - . ID=rna-AD39_RS0125325;Parent=gene-AD39_RS0125325;Dbxref=RFAM:RF02541;end_range=1949,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125325;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_JJLH01000046.1 cmsearch exon 1 1949 . - . ID=exon-AD39_RS0125325-1;Parent=rna-AD39_RS0125325;Dbxref=RFAM:RF02541;end_range=1949,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125325;partial=true;product=23S ribosomal RNA;start_range=.,1 ##sequence-region NZ_JJLH01000047.1 1 43340 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000047.1 RefSeq region 1 43340 . + . ID=NZ_JJLH01000047.1:1..43340;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000047.1 RefSeq gene 1 989 . - . ID=gene-AD39_RS0125330;Name=AD39_RS0125330;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0125330;partial=true;start_range=.,1 NZ_JJLH01000047.1 cmsearch rRNA 1 989 . - . ID=rna-AD39_RS0125330;Parent=gene-AD39_RS0125330;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125330;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_JJLH01000047.1 cmsearch exon 1 989 . - . ID=exon-AD39_RS0125330-1;Parent=rna-AD39_RS0125330;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125330;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_JJLH01000047.1 RefSeq gene 1462 2016 . + . ID=gene-AD39_RS06070;Name=AD39_RS06070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS06070;old_locus_tag=AD39_3819 NZ_JJLH01000047.1 Protein Homology CDS 1462 2016 . + 0 ID=cds-WP_001286216.1;Parent=gene-AD39_RS06070;Dbxref=GenBank:WP_001286216.1;Name=WP_001286216.1;Ontology_term=GO:0046872;gbkey=CDS;go_function=metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417738.4;locus_tag=AD39_RS06070;product=gamma carbonic anhydrase family protein;protein_id=WP_001286216.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 1992 2249 . - . ID=gene-AD39_RS0125335;Name=AD39_RS0125335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125335;old_locus_tag=AD39_3820 NZ_JJLH01000047.1 Protein Homology CDS 1992 2249 . - 0 ID=cds-WP_001070563.1;Parent=gene-AD39_RS0125335;Dbxref=GenBank:WP_001070563.1;Name=WP_001070563.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417739.1;locus_tag=AD39_RS0125335;product=DUF1488 domain-containing protein;protein_id=WP_001070563.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 2246 3064 . - . ID=gene-AD39_RS06065;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;locus_tag=AD39_RS06065;old_locus_tag=AD39_3821 NZ_JJLH01000047.1 Protein Homology CDS 2246 3064 . - 0 ID=cds-WP_032283556.1;Parent=gene-AD39_RS06065;Dbxref=GenBank:WP_032283556.1;Name=WP_032283556.1;Ontology_term=GO:0019632,GO:0004764;gbkey=CDS;gene=aroE;go_function=shikimate 3-dehydrogenase (NADP+) activity|0004764||IEA;go_process=shikimate metabolic process|0019632||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709069.2;locus_tag=AD39_RS06065;product=shikimate dehydrogenase;protein_id=WP_032283556.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 3069 3641 . - . ID=gene-AD39_RS06060;Name=tsaC;gbkey=Gene;gene=tsaC;gene_biotype=protein_coding;locus_tag=AD39_RS06060;old_locus_tag=AD39_3822 NZ_JJLH01000047.1 Protein Homology CDS 3069 3641 . - 0 ID=cds-WP_001297709.1;Parent=gene-AD39_RS06060;Dbxref=GenBank:WP_001297709.1;Name=WP_001297709.1;Ontology_term=GO:0002949,GO:0003725,GO:0005524;gbkey=CDS;gene=tsaC;go_function=double-stranded RNA binding|0003725||IEA,ATP binding|0005524||IEA;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312175.1;locus_tag=AD39_RS06060;product=L-threonylcarbamoyladenylate synthase type 1 TsaC;protein_id=WP_001297709.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 3646 4188 . - . ID=gene-AD39_RS0125340;Name=AD39_RS0125340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125340 NZ_JJLH01000047.1 Protein Homology CDS 3646 4188 . - 0 ID=cds-WP_001129723.1;Parent=gene-AD39_RS0125340;Dbxref=GenBank:WP_001129723.1;Name=WP_001129723.1;Ontology_term=GO:0006265,GO:0003677,GO:0003916,GO:0005694;gbkey=CDS;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase activity|0003916||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026210.1;locus_tag=AD39_RS0125340;product=DNA topoisomerase family protein;protein_id=WP_001129723.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 4217 4690 . - . ID=gene-AD39_RS06055;Name=smg;gbkey=Gene;gene=smg;gene_biotype=protein_coding;locus_tag=AD39_RS06055;old_locus_tag=AD39_3823 NZ_JJLH01000047.1 Protein Homology CDS 4217 4690 . - 0 ID=cds-WP_000460672.1;Parent=gene-AD39_RS06055;Dbxref=GenBank:WP_000460672.1;Name=WP_000460672.1;gbkey=CDS;gene=smg;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134083.1;locus_tag=AD39_RS06055;product=DUF494 family protein Smg;protein_id=WP_000460672.1;transl_table=11 NZ_JJLH01000047.1 RefSeq pseudogene 4662 5785 . - . ID=gene-AD39_RS0125345;Name=dprA;gbkey=Gene;gene=dprA;gene_biotype=pseudogene;locus_tag=AD39_RS0125345;pseudo=true NZ_JJLH01000047.1 Protein Homology CDS 4662 5785 . - 0 ID=cds-AD39_RS0125345;Parent=gene-AD39_RS0125345;Note=frameshifted;Ontology_term=GO:0009294;gbkey=CDS;gene=dprA;go_process=DNA-mediated transformation|0009294||IEA;inference=COORDINATES: protein motif:HMM:NF014533.6;locus_tag=AD39_RS0125345;product=DNA-protecting protein DprA;pseudo=true;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 5915 6424 . + . ID=gene-AD39_RS06050;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=AD39_RS06050;old_locus_tag=AD39_3826 NZ_JJLH01000047.1 Protein Homology CDS 5915 6424 . + 0 ID=cds-WP_000114984.1;Parent=gene-AD39_RS06050;Dbxref=GenBank:WP_000114984.1;Name=WP_000114984.1;Ontology_term=GO:0036211,GO:0042586;gbkey=CDS;gene=def;go_function=peptide deformylase activity|0042586||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312179.1;locus_tag=AD39_RS06050;product=peptide deformylase;protein_id=WP_000114984.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 6439 7386 . + . ID=gene-AD39_RS06045;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=AD39_RS06045;old_locus_tag=AD39_3827 NZ_JJLH01000047.1 Protein Homology CDS 6439 7386 . + 0 ID=cds-WP_001402578.1;Parent=gene-AD39_RS06045;Dbxref=GenBank:WP_001402578.1;Name=WP_001402578.1;Ontology_term=GO:0071951,GO:0004479,GO:0005737;gbkey=CDS;gene=fmt;go_component=cytoplasm|0005737||IEA;go_function=methionyl-tRNA formyltransferase activity|0004479||IEA;go_process=conversion of methionyl-tRNA to N-formyl-methionyl-tRNA|0071951||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312180.1;locus_tag=AD39_RS06045;product=methionyl-tRNA formyltransferase;protein_id=WP_001402578.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 7432 8721 . + . ID=gene-AD39_RS06040;Name=rsmB;gbkey=Gene;gene=rsmB;gene_biotype=protein_coding;locus_tag=AD39_RS06040;old_locus_tag=AD39_3828 NZ_JJLH01000047.1 Protein Homology CDS 7432 8721 . + 0 ID=cds-WP_000744780.1;Parent=gene-AD39_RS06040;Dbxref=GenBank:WP_000744780.1;Name=WP_000744780.1;Ontology_term=GO:0001510,GO:0006355,GO:0006364,GO:0003723,GO:0008649;gbkey=CDS;gene=rsmB;go_function=RNA binding|0003723||IEA,rRNA methyltransferase activity|0008649||IEA;go_process=RNA methylation|0001510||IEA,regulation of DNA-templated transcription|0006355||IEA,rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417747.1;locus_tag=AD39_RS06040;product=16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;protein_id=WP_000744780.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 8743 10119 . + . ID=gene-AD39_RS06035;Name=trkA;gbkey=Gene;gene=trkA;gene_biotype=protein_coding;locus_tag=AD39_RS06035;old_locus_tag=AD39_3829 NZ_JJLH01000047.1 Protein Homology CDS 8743 10119 . + 0 ID=cds-WP_000691382.1;Parent=gene-AD39_RS06035;Dbxref=GenBank:WP_000691382.1;Name=WP_000691382.1;Ontology_term=GO:0006813,GO:0015079,GO:0016020;gbkey=CDS;gene=trkA;go_component=membrane|0016020||IEA;go_function=potassium ion transmembrane transporter activity|0015079||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004125888.1;locus_tag=AD39_RS06035;product=Trk system potassium transporter TrkA;protein_id=WP_000691382.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 10249 10659 . + . ID=gene-AD39_RS06030;Name=mscL;gbkey=Gene;gene=mscL;gene_biotype=protein_coding;locus_tag=AD39_RS06030;old_locus_tag=AD39_3830 NZ_JJLH01000047.1 Protein Homology CDS 10249 10659 . + 0 ID=cds-WP_000022442.1;Parent=gene-AD39_RS06030;Dbxref=GenBank:WP_000022442.1;Name=WP_000022442.1;gbkey=CDS;gene=mscL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312183.1;locus_tag=AD39_RS06030;product=large-conductance mechanosensitive channel protein MscL;protein_id=WP_000022442.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 10656 10874 . - . ID=gene-AD39_RS0125350;Name=arfA;gbkey=Gene;gene=arfA;gene_biotype=protein_coding;locus_tag=AD39_RS0125350 NZ_JJLH01000047.1 Protein Homology CDS 10656 10874 . - 0 ID=cds-WP_000092699.1;Parent=gene-AD39_RS0125350;Dbxref=GenBank:WP_000092699.1;Name=WP_000092699.1;gbkey=CDS;gene=arfA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588467.1;locus_tag=AD39_RS0125350;product=alternative ribosome-rescue factor ArfA;protein_id=WP_000092699.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 10930 11355 . - . ID=gene-AD39_RS06025;Name=zntR;gbkey=Gene;gene=zntR;gene_biotype=protein_coding;locus_tag=AD39_RS06025;old_locus_tag=AD39_3831 NZ_JJLH01000047.1 Protein Homology CDS 10930 11355 . - 0 ID=cds-WP_000285607.1;Parent=gene-AD39_RS06025;Dbxref=GenBank:WP_000285607.1;Name=WP_000285607.1;Ontology_term=GO:0006355,GO:0003677,GO:0008270;gbkey=CDS;gene=zntR;go_function=DNA binding|0003677||IEA,zinc ion binding|0008270||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312184.1;locus_tag=AD39_RS06025;product=Zn(2+)-responsive transcriptional regulator;protein_id=WP_000285607.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 11366 11734 . - . ID=gene-AD39_RS06020;Name=AD39_RS06020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS06020;old_locus_tag=AD39_3832 NZ_JJLH01000047.1 Protein Homology CDS 11366 11734 . - 0 ID=cds-WP_000266480.1;Parent=gene-AD39_RS06020;Dbxref=GenBank:WP_000266480.1;Name=WP_000266480.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417752.1;locus_tag=AD39_RS06020;product=DUF1992 domain-containing protein;protein_id=WP_000266480.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 11841 12224 . - . ID=gene-AD39_RS06015;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=AD39_RS06015;old_locus_tag=AD39_3833 NZ_JJLH01000047.1 Protein Homology CDS 11841 12224 . - 0 ID=cds-WP_001216368.1;Parent=gene-AD39_RS06015;Dbxref=GenBank:WP_001216368.1;Name=WP_001216368.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312186.1;locus_tag=AD39_RS06015;product=50S ribosomal protein L17;protein_id=WP_001216368.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 12265 13254 . - . ID=gene-AD39_RS06010;Name=AD39_RS06010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS06010;old_locus_tag=AD39_3834 NZ_JJLH01000047.1 Protein Homology CDS 12265 13254 . - 0 ID=cds-WP_001162094.1;Parent=gene-AD39_RS06010;Dbxref=GenBank:WP_001162094.1;Name=WP_001162094.1;Ontology_term=GO:0006351,GO:0003899;gbkey=CDS;go_function=DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005970247.1;locus_tag=AD39_RS06010;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_001162094.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 13280 13900 . - . ID=gene-AD39_RS06005;Name=rpsD;gbkey=Gene;gene=rpsD;gene_biotype=protein_coding;locus_tag=AD39_RS06005;old_locus_tag=AD39_3835 NZ_JJLH01000047.1 Protein Homology CDS 13280 13900 . - 0 ID=cds-WP_000135224.1;Parent=gene-AD39_RS06005;Dbxref=GenBank:WP_000135224.1;Name=WP_000135224.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0015935;gbkey=CDS;gene=rpsD;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004410410.1;locus_tag=AD39_RS06005;product=30S ribosomal protein S4;protein_id=WP_000135224.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 13934 14323 . - . ID=gene-AD39_RS06000;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;locus_tag=AD39_RS06000;old_locus_tag=AD39_3836 NZ_JJLH01000047.1 Protein Homology CDS 13934 14323 . - 0 ID=cds-WP_001029684.1;Parent=gene-AD39_RS06000;Dbxref=GenBank:WP_001029684.1;Name=WP_001029684.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001029758.1;locus_tag=AD39_RS06000;product=30S ribosomal protein S11;protein_id=WP_001029684.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 14340 14696 . - . ID=gene-AD39_RS05995;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;locus_tag=AD39_RS05995;old_locus_tag=AD39_3837 NZ_JJLH01000047.1 Protein Homology CDS 14340 14696 . - 0 ID=cds-WP_000090775.1;Parent=gene-AD39_RS05995;Dbxref=GenBank:WP_000090775.1;Name=WP_000090775.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsM;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019935869.1;locus_tag=AD39_RS05995;product=30S ribosomal protein S13;protein_id=WP_000090775.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 14843 14959 . - . ID=gene-AD39_RS05990;Name=rpmJ;gbkey=Gene;gene=rpmJ;gene_biotype=protein_coding;locus_tag=AD39_RS05990;old_locus_tag=AD39_3838 NZ_JJLH01000047.1 Protein Homology CDS 14843 14959 . - 0 ID=cds-WP_000868187.1;Parent=gene-AD39_RS05990;Dbxref=GenBank:WP_000868187.1;Name=WP_000868187.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmJ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020322760.1;locus_tag=AD39_RS05990;product=50S ribosomal protein L36;protein_id=WP_000868187.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 14991 16322 . - . ID=gene-AD39_RS05985;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=AD39_RS05985;old_locus_tag=AD39_3839 NZ_JJLH01000047.1 Protein Homology CDS 14991 16322 . - 0 ID=cds-WP_001118861.1;Parent=gene-AD39_RS05985;Dbxref=GenBank:WP_001118861.1;Name=WP_001118861.1;Ontology_term=GO:0015031,GO:0043952,GO:0016020;gbkey=CDS;gene=secY;go_component=membrane|0016020||IEA;go_process=protein transport|0015031||IEA,protein transport by the Sec complex|0043952||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004868351.1;locus_tag=AD39_RS05985;product=preprotein translocase subunit SecY;protein_id=WP_001118861.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 16330 16764 . - . ID=gene-AD39_RS05980;Name=rplO;gbkey=Gene;gene=rplO;gene_biotype=protein_coding;locus_tag=AD39_RS05980;old_locus_tag=AD39_3840 NZ_JJLH01000047.1 Protein Homology CDS 16330 16764 . - 0 ID=cds-WP_001238915.1;Parent=gene-AD39_RS05980;Dbxref=GenBank:WP_001238915.1;Name=WP_001238915.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplO;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011095501.1;locus_tag=AD39_RS05980;product=50S ribosomal protein L15;protein_id=WP_001238915.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 16768 16947 . - . ID=gene-AD39_RS05975;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=AD39_RS05975;old_locus_tag=AD39_3841 NZ_JJLH01000047.1 Protein Homology CDS 16768 16947 . - 0 ID=cds-WP_001140433.1;Parent=gene-AD39_RS05975;Dbxref=GenBank:WP_001140433.1;Name=WP_001140433.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rpmD;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012147215.1;locus_tag=AD39_RS05975;product=50S ribosomal protein L30;protein_id=WP_001140433.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 16951 17454 . - . ID=gene-AD39_RS05970;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;locus_tag=AD39_RS05970;old_locus_tag=AD39_3842 NZ_JJLH01000047.1 Protein Homology CDS 16951 17454 . - 0 ID=cds-WP_000940121.1;Parent=gene-AD39_RS05970;Dbxref=GenBank:WP_000940121.1;Name=WP_000940121.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsE;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004106339.1;locus_tag=AD39_RS05970;product=30S ribosomal protein S5;protein_id=WP_000940121.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 17469 17822 . - . ID=gene-AD39_RS05965;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;locus_tag=AD39_RS05965;old_locus_tag=AD39_3843 NZ_JJLH01000047.1 Protein Homology CDS 17469 17822 . - 0 ID=cds-WP_000358960.1;Parent=gene-AD39_RS05965;Dbxref=GenBank:WP_000358960.1;Name=WP_000358960.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplR;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005970258.1;locus_tag=AD39_RS05965;product=50S ribosomal protein L18;protein_id=WP_000358960.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 17832 18365 . - . ID=gene-AD39_RS05960;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;locus_tag=AD39_RS05960;old_locus_tag=AD39_3844 NZ_JJLH01000047.1 Protein Homology CDS 17832 18365 . - 0 ID=cds-WP_000091945.1;Parent=gene-AD39_RS05960;Dbxref=GenBank:WP_000091945.1;Name=WP_000091945.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843,GO:0005840;gbkey=CDS;gene=rplF;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003031129.1;locus_tag=AD39_RS05960;product=50S ribosomal protein L6;protein_id=WP_000091945.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 18378 18770 . - . ID=gene-AD39_RS05955;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;locus_tag=AD39_RS05955;old_locus_tag=AD39_3845 NZ_JJLH01000047.1 Protein Homology CDS 18378 18770 . - 0 ID=cds-WP_000062611.1;Parent=gene-AD39_RS05955;Dbxref=GenBank:WP_000062611.1;Name=WP_000062611.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsH;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011148781.1;locus_tag=AD39_RS05955;product=30S ribosomal protein S8;protein_id=WP_000062611.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 18804 19109 . - . ID=gene-AD39_RS05950;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=AD39_RS05950;old_locus_tag=AD39_3846 NZ_JJLH01000047.1 Protein Homology CDS 18804 19109 . - 0 ID=cds-WP_001118930.1;Parent=gene-AD39_RS05950;Dbxref=GenBank:WP_001118930.1;Name=WP_001118930.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsN;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005599304.1;locus_tag=AD39_RS05950;product=30S ribosomal protein S14;protein_id=WP_001118930.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 19124 19663 . - . ID=gene-AD39_RS05945;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;locus_tag=AD39_RS05945;old_locus_tag=AD39_3847 NZ_JJLH01000047.1 Protein Homology CDS 19124 19663 . - 0 ID=cds-WP_001096200.1;Parent=gene-AD39_RS05945;Dbxref=GenBank:WP_001096200.1;Name=WP_001096200.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001096198.1;locus_tag=AD39_RS05945;product=50S ribosomal protein L5;protein_id=WP_001096200.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 19678 19992 . - . ID=gene-AD39_RS05940;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=AD39_RS05940;old_locus_tag=AD39_3848 NZ_JJLH01000047.1 Protein Homology CDS 19678 19992 . - 0 ID=cds-WP_000729185.1;Parent=gene-AD39_RS05940;Dbxref=GenBank:WP_000729185.1;Name=WP_000729185.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplX;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000729185.1;locus_tag=AD39_RS05940;product=50S ribosomal protein L24;protein_id=WP_000729185.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 20003 20374 . - . ID=gene-AD39_RS05935;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;locus_tag=AD39_RS05935;old_locus_tag=AD39_3849 NZ_JJLH01000047.1 Protein Homology CDS 20003 20374 . - 0 ID=cds-WP_000613955.1;Parent=gene-AD39_RS05935;Dbxref=GenBank:WP_000613955.1;Name=WP_000613955.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplN;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012728338.1;locus_tag=AD39_RS05935;product=50S ribosomal protein L14;protein_id=WP_000613955.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 20539 20793 . - . ID=gene-AD39_RS05930;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;locus_tag=AD39_RS05930;old_locus_tag=AD39_3850 NZ_JJLH01000047.1 Protein Homology CDS 20539 20793 . - 0 ID=cds-WP_000130100.1;Parent=gene-AD39_RS05930;Dbxref=GenBank:WP_000130100.1;Name=WP_000130100.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsQ;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006817275.1;locus_tag=AD39_RS05930;product=30S ribosomal protein S17;protein_id=WP_000130100.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 20793 20984 . - . ID=gene-AD39_RS05925;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=AD39_RS05925;old_locus_tag=AD39_3851 NZ_JJLH01000047.1 Protein Homology CDS 20793 20984 . - 0 ID=cds-WP_000644741.1;Parent=gene-AD39_RS05925;Dbxref=GenBank:WP_000644741.1;Name=WP_000644741.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000644743.1;locus_tag=AD39_RS05925;product=50S ribosomal protein L29;protein_id=WP_000644741.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 20984 21394 . - . ID=gene-AD39_RS05920;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=AD39_RS05920;old_locus_tag=AD39_3852 NZ_JJLH01000047.1 Protein Homology CDS 20984 21394 . - 0 ID=cds-WP_000941212.1;Parent=gene-AD39_RS05920;Dbxref=GenBank:WP_000941212.1;Name=WP_000941212.1;Ontology_term=GO:0006412,GO:0003735,GO:0019843;gbkey=CDS;gene=rplP;go_function=structural constituent of ribosome|0003735||IEA,rRNA binding|0019843||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017805229.1;locus_tag=AD39_RS05920;product=50S ribosomal protein L16;protein_id=WP_000941212.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 21407 22108 . - . ID=gene-AD39_RS05915;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=AD39_RS05915;old_locus_tag=AD39_3853 NZ_JJLH01000047.1 Protein Homology CDS 21407 22108 . - 0 ID=cds-WP_000529945.1;Parent=gene-AD39_RS05915;Dbxref=GenBank:WP_000529945.1;Name=WP_000529945.1;Ontology_term=GO:0006412,GO:0003735;gbkey=CDS;gene=rpsC;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742302.1;locus_tag=AD39_RS05915;product=30S ribosomal protein S3;protein_id=WP_000529945.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 22126 22458 . - . ID=gene-AD39_RS05910;Name=rplV;gbkey=Gene;gene=rplV;gene_biotype=protein_coding;locus_tag=AD39_RS05910;old_locus_tag=AD39_3854 NZ_JJLH01000047.1 Protein Homology CDS 22126 22458 . - 0 ID=cds-WP_000447529.1;Parent=gene-AD39_RS05910;Dbxref=GenBank:WP_000447529.1;Name=WP_000447529.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplV;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000447526.1;locus_tag=AD39_RS05910;product=50S ribosomal protein L22;protein_id=WP_000447529.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 22473 22751 . - . ID=gene-AD39_RS0125355;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;locus_tag=AD39_RS0125355 NZ_JJLH01000047.1 Protein Homology CDS 22473 22751 . - 0 ID=cds-WP_001138117.1;Parent=gene-AD39_RS0125355;Dbxref=GenBank:WP_001138117.1;Name=WP_001138117.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsS;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011148791.1;locus_tag=AD39_RS0125355;product=30S ribosomal protein S19;protein_id=WP_001138117.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 22768 23589 . - . ID=gene-AD39_RS05905;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=AD39_RS05905;old_locus_tag=AD39_3856 NZ_JJLH01000047.1 Protein Homology CDS 22768 23589 . - 0 ID=cds-WP_000301864.1;Parent=gene-AD39_RS05905;Dbxref=GenBank:WP_000301864.1;Name=WP_000301864.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0016740,GO:0015934;gbkey=CDS;gene=rplB;go_component=large ribosomal subunit|0015934||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA,transferase activity|0016740||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001738551.1;locus_tag=AD39_RS05905;product=50S ribosomal protein L2;protein_id=WP_000301864.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 23607 23909 . - . ID=gene-AD39_RS05900;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=AD39_RS05900;old_locus_tag=AD39_3857 NZ_JJLH01000047.1 Protein Homology CDS 23607 23909 . - 0 ID=cds-WP_000617544.1;Parent=gene-AD39_RS05900;Dbxref=GenBank:WP_000617544.1;Name=WP_000617544.1;gbkey=CDS;gene=rplW;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007891652.1;locus_tag=AD39_RS05900;product=50S ribosomal protein L23;protein_id=WP_000617544.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 23906 24511 . - . ID=gene-AD39_RS05895;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=AD39_RS05895;old_locus_tag=AD39_3858 NZ_JJLH01000047.1 Protein Homology CDS 23906 24511 . - 0 ID=cds-WP_000424395.1;Parent=gene-AD39_RS05895;Dbxref=GenBank:WP_000424395.1;Name=WP_000424395.1;Ontology_term=GO:0006412,GO:0003735,GO:0022625;gbkey=CDS;gene=rplD;go_component=cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010304939.1;locus_tag=AD39_RS05895;product=50S ribosomal protein L4;protein_id=WP_000424395.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 24522 25151 . - . ID=gene-AD39_RS05890;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;locus_tag=AD39_RS05890;old_locus_tag=AD39_3859 NZ_JJLH01000047.1 Protein Homology CDS 24522 25151 . - 0 ID=cds-WP_000579833.1;Parent=gene-AD39_RS05890;Dbxref=GenBank:WP_000579833.1;Name=WP_000579833.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplC;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000579825.1;locus_tag=AD39_RS05890;product=50S ribosomal protein L3;protein_id=WP_000579833.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 25184 25495 . - . ID=gene-AD39_RS05885;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;locus_tag=AD39_RS05885;old_locus_tag=AD39_3860 NZ_JJLH01000047.1 Protein Homology CDS 25184 25495 . - 0 ID=cds-WP_001181004.1;Parent=gene-AD39_RS05885;Dbxref=GenBank:WP_001181004.1;Name=WP_001181004.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0005840;gbkey=CDS;gene=rpsJ;go_component=ribosome|0005840||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014268624.1;locus_tag=AD39_RS05885;product=30S ribosomal protein S10;protein_id=WP_001181004.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 25733 26152 . - . ID=gene-AD39_RS05880;Name=gspB;gbkey=Gene;gene=gspB;gene_biotype=protein_coding;locus_tag=AD39_RS05880;old_locus_tag=AD39_3861 NZ_JJLH01000047.1 Protein Homology CDS 25733 26152 . - 0 ID=cds-WP_000461449.1;Parent=gene-AD39_RS05880;Dbxref=GenBank:WP_000461449.1;Name=WP_000461449.1;gbkey=CDS;gene=gspB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417781.1;locus_tag=AD39_RS05880;product=putative general secretion pathway protein GspB;protein_id=WP_000461449.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 26154 27623 . - . ID=gene-AD39_RS05875;Name=gspA;gbkey=Gene;gene=gspA;gene_biotype=protein_coding;locus_tag=AD39_RS05875;old_locus_tag=AD39_3862 NZ_JJLH01000047.1 Protein Homology CDS 26154 27623 . - 0 ID=cds-WP_001402579.1;Parent=gene-AD39_RS05875;Dbxref=GenBank:WP_001402579.1;Name=WP_001402579.1;gbkey=CDS;gene=gspA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417782.1;locus_tag=AD39_RS05875;product=type II secretion system protein GspA;protein_id=WP_001402579.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 27803 28618 . + . ID=gene-AD39_RS05870;Name=gspC;gbkey=Gene;gene=gspC;gene_biotype=protein_coding;locus_tag=AD39_RS05870;old_locus_tag=AD39_3863 NZ_JJLH01000047.1 Protein Homology CDS 27803 28618 . + 0 ID=cds-WP_001142708.1;Parent=gene-AD39_RS05870;Dbxref=GenBank:WP_001142708.1;Name=WP_001142708.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspC;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417783.1;locus_tag=AD39_RS05870;product=type II secretion system protein GspC;protein_id=WP_001142708.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 28602 30554 . + . ID=gene-AD39_RS05865;Name=gspD;gbkey=Gene;gene=gspD;gene_biotype=protein_coding;locus_tag=AD39_RS05865;old_locus_tag=AD39_3864 NZ_JJLH01000047.1 Protein Homology CDS 28602 30554 . + 0 ID=cds-WP_023155400.1;Parent=gene-AD39_RS05865;Dbxref=GenBank:WP_023155400.1;Name=WP_023155400.1;Ontology_term=GO:0015628,GO:0015627,GO:0019867;gbkey=CDS;gene=gspD;go_component=type II protein secretion system complex|0015627||IEA,outer membrane|0019867||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417784.4;locus_tag=AD39_RS05865;product=type II secretion system secretin GspD;protein_id=WP_023155400.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 30564 32045 . + . ID=gene-AD39_RS05860;Name=gspE;gbkey=Gene;gene=gspE;gene_biotype=protein_coding;locus_tag=AD39_RS05860;old_locus_tag=AD39_3865 NZ_JJLH01000047.1 Protein Homology CDS 30564 32045 . + 0 ID=cds-WP_001402581.1;Parent=gene-AD39_RS05860;Dbxref=GenBank:WP_001402581.1;Name=WP_001402581.1;Ontology_term=GO:0015628,GO:0005524,GO:0015627;gbkey=CDS;gene=gspE;go_component=type II protein secretion system complex|0015627||IEA;go_function=ATP binding|0005524||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417785.1;locus_tag=AD39_RS05860;product=type II secretion system ATPase GspE;protein_id=WP_001402581.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 32042 33238 . + . ID=gene-AD39_RS05855;Name=gspF;gbkey=Gene;gene=gspF;gene_biotype=protein_coding;locus_tag=AD39_RS05855;old_locus_tag=AD39_3866 NZ_JJLH01000047.1 Protein Homology CDS 32042 33238 . + 0 ID=cds-WP_001109573.1;Parent=gene-AD39_RS05855;Dbxref=GenBank:WP_001109573.1;Name=WP_001109573.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspF;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417786.1;locus_tag=AD39_RS05855;product=type II secretion system inner membrane protein GspF;protein_id=WP_001109573.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 33248 33685 . + . ID=gene-AD39_RS05850;Name=gspG;gbkey=Gene;gene=gspG;gene_biotype=protein_coding;locus_tag=AD39_RS05850;old_locus_tag=AD39_3867 NZ_JJLH01000047.1 Protein Homology CDS 33248 33685 . + 0 ID=cds-WP_001202874.1;Parent=gene-AD39_RS05850;Dbxref=GenBank:WP_001202874.1;Name=WP_001202874.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspG;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417787.1;locus_tag=AD39_RS05850;product=type II secretion system major pseudopilin GspG;protein_id=WP_001202874.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 33693 34202 . + . ID=gene-AD39_RS05845;Name=gspH;gbkey=Gene;gene=gspH;gene_biotype=protein_coding;locus_tag=AD39_RS05845;old_locus_tag=AD39_3868 NZ_JJLH01000047.1 Protein Homology CDS 33693 34202 . + 0 ID=cds-WP_001076044.1;Parent=gene-AD39_RS05845;Dbxref=GenBank:WP_001076044.1;Name=WP_001076044.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspH;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417788.1;locus_tag=AD39_RS05845;product=type II secretion system minor pseudopilin GspH;protein_id=WP_001076044.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 34199 34576 . + . ID=gene-AD39_RS05840;Name=gspI;gbkey=Gene;gene=gspI;gene_biotype=protein_coding;locus_tag=AD39_RS05840;old_locus_tag=AD39_3869 NZ_JJLH01000047.1 Protein Homology CDS 34199 34576 . + 0 ID=cds-WP_001041743.1;Parent=gene-AD39_RS05840;Dbxref=GenBank:WP_001041743.1;Name=WP_001041743.1;Ontology_term=GO:0015628,GO:0015627;gbkey=CDS;gene=gspI;go_component=type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417789.4;locus_tag=AD39_RS05840;product=type II secretion system minor pseudopilin GspI;protein_id=WP_001041743.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 34569 35156 . + . ID=gene-AD39_RS05835;Name=gspJ;gbkey=Gene;gene=gspJ;gene_biotype=protein_coding;locus_tag=AD39_RS05835;old_locus_tag=AD39_3870 NZ_JJLH01000047.1 Protein Homology CDS 34569 35156 . + 0 ID=cds-WP_001402582.1;Parent=gene-AD39_RS05835;Dbxref=GenBank:WP_001402582.1;Name=WP_001402582.1;gbkey=CDS;gene=gspJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417790.1;locus_tag=AD39_RS05835;product=type II secretion system minor pseudopilin GspJ;protein_id=WP_001402582.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 35149 36132 . + . ID=gene-AD39_RS05830;Name=gspK;gbkey=Gene;gene=gspK;gene_biotype=protein_coding;locus_tag=AD39_RS05830;old_locus_tag=AD39_3871 NZ_JJLH01000047.1 Protein Homology CDS 35149 36132 . + 0 ID=cds-WP_001058522.1;Parent=gene-AD39_RS05830;Dbxref=GenBank:WP_001058522.1;Name=WP_001058522.1;Ontology_term=GO:0009306,GO:0016020;gbkey=CDS;gene=gspK;go_component=membrane|0016020||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417791.1;locus_tag=AD39_RS05830;product=type II secretion system minor pseudopilin GspK;protein_id=WP_001058522.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 36147 37310 . + . ID=gene-AD39_RS05825;Name=gspL;gbkey=Gene;gene=gspL;gene_biotype=protein_coding;locus_tag=AD39_RS05825;old_locus_tag=AD39_3872 NZ_JJLH01000047.1 Protein Homology CDS 36147 37310 . + 0 ID=cds-WP_001115238.1;Parent=gene-AD39_RS05825;Dbxref=GenBank:WP_001115238.1;Name=WP_001115238.1;Ontology_term=GO:0015628,GO:0009276,GO:0015627;gbkey=CDS;gene=gspL;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA,type II protein secretion system complex|0015627||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417792.2;locus_tag=AD39_RS05825;product=type II secretion system protein GspL;protein_id=WP_001115238.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 37307 37768 . + . ID=gene-AD39_RS05820;Name=gspM;gbkey=Gene;gene=gspM;gene_biotype=protein_coding;locus_tag=AD39_RS05820;old_locus_tag=AD39_3873 NZ_JJLH01000047.1 Protein Homology CDS 37307 37768 . + 0 ID=cds-WP_001295161.1;Parent=gene-AD39_RS05820;Dbxref=GenBank:WP_001295161.1;Name=WP_001295161.1;gbkey=CDS;gene=gspM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417793.2;locus_tag=AD39_RS05820;product=type II secretion system protein GspM;protein_id=WP_001295161.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 37768 38445 . + . ID=gene-AD39_RS05815;Name=gspO;gbkey=Gene;gene=gspO;gene_biotype=protein_coding;locus_tag=AD39_RS05815;old_locus_tag=AD39_3874 NZ_JJLH01000047.1 Protein Homology CDS 37768 38445 . + 0 ID=cds-WP_000178161.1;Parent=gene-AD39_RS05815;Dbxref=GenBank:WP_000178161.1;Name=WP_000178161.1;gbkey=CDS;gene=gspO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417794.1;locus_tag=AD39_RS05815;product=prepilin peptidase GspO;protein_id=WP_000178161.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 38474 38950 . - . ID=gene-AD39_RS05810;Name=bfr;gbkey=Gene;gene=bfr;gene_biotype=protein_coding;locus_tag=AD39_RS05810;old_locus_tag=AD39_3875 NZ_JJLH01000047.1 Protein Homology CDS 38474 38950 . - 0 ID=cds-WP_000675504.1;Parent=gene-AD39_RS05810;Dbxref=GenBank:WP_000675504.1;Name=WP_000675504.1;Ontology_term=GO:0006879,GO:0004322,GO:0008199;gbkey=CDS;gene=bfr;go_function=ferroxidase activity|0004322||IEA,ferric iron binding|0008199||IEA;go_process=intracellular iron ion homeostasis|0006879||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417795.1;locus_tag=AD39_RS05810;product=bacterioferritin;protein_id=WP_000675504.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 39022 39216 . - . ID=gene-AD39_RS05805;Name=bfd;gbkey=Gene;gene=bfd;gene_biotype=protein_coding;locus_tag=AD39_RS05805;old_locus_tag=AD39_3876 NZ_JJLH01000047.1 Protein Homology CDS 39022 39216 . - 0 ID=cds-WP_000289085.1;Parent=gene-AD39_RS05805;Dbxref=GenBank:WP_000289085.1;Name=WP_000289085.1;gbkey=CDS;gene=bfd;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417796.1;locus_tag=AD39_RS05805;product=bacterioferritin-associated ferredoxin;protein_id=WP_000289085.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 39385 42078 . - . ID=gene-AD39_RS0125360;Name=chiA;gbkey=Gene;gene=chiA;gene_biotype=protein_coding;locus_tag=AD39_RS0125360 NZ_JJLH01000047.1 Protein Homology CDS 39385 42078 . - 0 ID=cds-WP_001402584.1;Parent=gene-AD39_RS0125360;Dbxref=GenBank:WP_001402584.1;Name=WP_001402584.1;gbkey=CDS;gene=chiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417797.1;locus_tag=AD39_RS0125360;product=bifunctional chitinase/lysozyme;protein_id=WP_001402584.1;transl_table=11 NZ_JJLH01000047.1 RefSeq gene 42370 43340 . - . ID=gene-AD39_RS05800;Name=tuf;end_range=43340,.;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=AD39_RS05800;old_locus_tag=AD39_3878;partial=true NZ_JJLH01000047.1 Protein Homology CDS 42370 43340 . - 2 ID=cds-WP_024170648.1;Parent=gene-AD39_RS05800;Dbxref=GenBank:WP_024170648.1;Name=WP_024170648.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;end_range=43340,.;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312217.1;locus_tag=AD39_RS05800;partial=true;product=elongation factor Tu;protein_id=WP_024170648.1;transl_table=11 ##sequence-region NZ_JJLH01000048.1 1 189871 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000048.1 RefSeq region 1 189871 . + . ID=NZ_JJLH01000048.1:1..189871;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000048.1 RefSeq gene 1 1091 . - . ID=gene-AD39_RS05795;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=AD39_RS05795;old_locus_tag=AD39_3879;partial=true;start_range=.,1 NZ_JJLH01000048.1 Protein Homology CDS 1 1091 . - 0 ID=cds-WP_032287625.1;Parent=gene-AD39_RS05795;Dbxref=GenBank:WP_032287625.1;Name=WP_032287625.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312217.1;locus_tag=AD39_RS05795;partial=true;product=elongation factor Tu;protein_id=WP_032287625.1;start_range=.,1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 1162 3276 . - . ID=gene-AD39_RS05790;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=AD39_RS05790;old_locus_tag=AD39_3880 NZ_JJLH01000048.1 Protein Homology CDS 1162 3276 . - 0 ID=cds-WP_001428267.1;Parent=gene-AD39_RS05790;Dbxref=GenBank:WP_001428267.1;Name=WP_001428267.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;gbkey=CDS;gene=fusA;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020455498.1;locus_tag=AD39_RS05790;product=elongation factor G;protein_id=WP_001428267.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 3373 3843 . - . ID=gene-AD39_RS05785;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;locus_tag=AD39_RS05785;old_locus_tag=AD39_3881 NZ_JJLH01000048.1 Protein Homology CDS 3373 3843 . - 0 ID=cds-WP_001138043.1;Parent=gene-AD39_RS05785;Dbxref=GenBank:WP_001138043.1;Name=WP_001138043.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsG;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001742319.1;locus_tag=AD39_RS05785;product=30S ribosomal protein S7;protein_id=WP_001138043.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 3940 4314 . - . ID=gene-AD39_RS05780;Name=rpsL;gbkey=Gene;gene=rpsL;gene_biotype=protein_coding;locus_tag=AD39_RS05780;old_locus_tag=AD39_3882 NZ_JJLH01000048.1 Protein Homology CDS 3940 4314 . - 0 ID=cds-WP_000246815.1;Parent=gene-AD39_RS05780;Dbxref=GenBank:WP_000246815.1;Name=WP_000246815.1;Ontology_term=GO:0006412,GO:0003735,GO:0015935;gbkey=CDS;gene=rpsL;go_component=small ribosomal subunit|0015935||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005306278.1;locus_tag=AD39_RS05780;product=30S ribosomal protein S12;protein_id=WP_000246815.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 4440 4727 . - . ID=gene-AD39_RS05775;Name=tusB;gbkey=Gene;gene=tusB;gene_biotype=protein_coding;locus_tag=AD39_RS05775;old_locus_tag=AD39_3883 NZ_JJLH01000048.1 Protein Homology CDS 4440 4727 . - 0 ID=cds-WP_000903377.1;Parent=gene-AD39_RS05775;Dbxref=GenBank:WP_000903377.1;Name=WP_000903377.1;Ontology_term=GO:0002143;gbkey=CDS;gene=tusB;go_process=tRNA wobble position uridine thiolation|0002143||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312221.1;locus_tag=AD39_RS05775;product=sulfurtransferase complex subunit TusB;protein_id=WP_000903377.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 4735 5094 . - . ID=gene-AD39_RS05770;Name=tusC;gbkey=Gene;gene=tusC;gene_biotype=protein_coding;locus_tag=AD39_RS05770;old_locus_tag=AD39_3884 NZ_JJLH01000048.1 Protein Homology CDS 4735 5094 . - 0 ID=cds-WP_032283560.1;Parent=gene-AD39_RS05770;Dbxref=GenBank:WP_032283560.1;Name=WP_032283560.1;gbkey=CDS;gene=tusC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417803.1;locus_tag=AD39_RS05770;product=sulfurtransferase complex subunit TusC;protein_id=WP_032283560.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 5094 5480 . - . ID=gene-AD39_RS05765;Name=tusD;gbkey=Gene;gene=tusD;gene_biotype=protein_coding;locus_tag=AD39_RS05765;old_locus_tag=AD39_3885 NZ_JJLH01000048.1 Protein Homology CDS 5094 5480 . - 0 ID=cds-WP_032283561.1;Parent=gene-AD39_RS05765;Dbxref=GenBank:WP_032283561.1;Name=WP_032283561.1;Ontology_term=GO:0008033,GO:0016783;gbkey=CDS;gene=tusD;go_function=sulfurtransferase activity|0016783||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709119.1;locus_tag=AD39_RS05765;product=sulfurtransferase complex subunit TusD;protein_id=WP_032283561.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 5480 6202 . - . ID=gene-AD39_RS05760;Name=yheO;gbkey=Gene;gene=yheO;gene_biotype=protein_coding;locus_tag=AD39_RS05760;old_locus_tag=AD39_3886 NZ_JJLH01000048.1 Protein Homology CDS 5480 6202 . - 0 ID=cds-WP_000091466.1;Parent=gene-AD39_RS05760;Dbxref=GenBank:WP_000091466.1;Name=WP_000091466.1;Ontology_term=GO:0006355,GO:0007165,GO:0003677,GO:0003700,GO:0005515,GO:0140110;gbkey=CDS;gene=yheO;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA,protein binding|0005515||IEA,transcription regulator activity|0140110||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709120.2;locus_tag=AD39_RS05760;product=helix-turn-helix transcriptional regulator;protein_id=WP_000091466.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 6369 7181 . - . ID=gene-AD39_RS05755;Name=fkpA;gbkey=Gene;gene=fkpA;gene_biotype=protein_coding;locus_tag=AD39_RS05755;old_locus_tag=AD39_3887 NZ_JJLH01000048.1 Protein Homology CDS 6369 7181 . - 0 ID=cds-WP_000838261.1;Parent=gene-AD39_RS05755;Dbxref=GenBank:WP_000838261.1;Name=WP_000838261.1;Ontology_term=GO:0006457,GO:0003755;gbkey=CDS;gene=fkpA;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312225.1;locus_tag=AD39_RS05755;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000838261.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 7402 7620 . + . ID=gene-AD39_RS05750;Name=slyX;gbkey=Gene;gene=slyX;gene_biotype=protein_coding;locus_tag=AD39_RS05750;old_locus_tag=AD39_3888 NZ_JJLH01000048.1 Protein Homology CDS 7402 7620 . + 0 ID=cds-WP_001153615.1;Parent=gene-AD39_RS05750;Dbxref=GenBank:WP_001153615.1;Name=WP_001153615.1;gbkey=CDS;gene=slyX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312226.1;locus_tag=AD39_RS05750;product=protein SlyX;protein_id=WP_001153615.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 7669 8259 . - . ID=gene-AD39_RS05745;Name=slyD;gbkey=Gene;gene=slyD;gene_biotype=protein_coding;locus_tag=AD39_RS05745;old_locus_tag=AD39_3889 NZ_JJLH01000048.1 Protein Homology CDS 7669 8259 . - 0 ID=cds-WP_000861334.1;Parent=gene-AD39_RS05745;Dbxref=GenBank:WP_000861334.1;Name=WP_000861334.1;Ontology_term=GO:0003755;gbkey=CDS;gene=slyD;go_function=peptidyl-prolyl cis-trans isomerase activity|0003755||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312227.1;locus_tag=AD39_RS05745;product=peptidylprolyl isomerase;protein_id=WP_000861334.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 8354 8554 . - . ID=gene-AD39_RS05740;Name=yheV;gbkey=Gene;gene=yheV;gene_biotype=protein_coding;locus_tag=AD39_RS05740;old_locus_tag=AD39_3890 NZ_JJLH01000048.1 Protein Homology CDS 8354 8554 . - 0 ID=cds-WP_001007730.1;Parent=gene-AD39_RS05740;Dbxref=GenBank:WP_001007730.1;Name=WP_001007730.1;gbkey=CDS;gene=yheV;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588468.1;locus_tag=AD39_RS05740;product=YheV family putative zinc ribbon protein;protein_id=WP_001007730.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 8564 10369 . - . ID=gene-AD39_RS05735;Name=kefB;gbkey=Gene;gene=kefB;gene_biotype=protein_coding;locus_tag=AD39_RS05735;old_locus_tag=AD39_3891 NZ_JJLH01000048.1 Protein Homology CDS 8564 10369 . - 0 ID=cds-WP_000399122.1;Parent=gene-AD39_RS05735;Dbxref=GenBank:WP_000399122.1;Name=WP_000399122.1;Ontology_term=GO:0006813,GO:0015503;gbkey=CDS;gene=kefB;go_function=glutathione-regulated potassium exporter activity|0015503||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417809.1;locus_tag=AD39_RS05735;product=glutathione-regulated potassium-efflux system protein KefB;protein_id=WP_000399122.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 10369 10920 . - . ID=gene-AD39_RS05730;Name=kefG;gbkey=Gene;gene=kefG;gene_biotype=protein_coding;locus_tag=AD39_RS05730;old_locus_tag=AD39_3892 NZ_JJLH01000048.1 Protein Homology CDS 10369 10920 . - 0 ID=cds-WP_001384304.1;Parent=gene-AD39_RS05730;Dbxref=GenBank:WP_001384304.1;Name=WP_001384304.1;Ontology_term=GO:0006813;gbkey=CDS;gene=kefG;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312229.2;locus_tag=AD39_RS05730;product=glutathione-regulated potassium-efflux system ancillary protein KefG;protein_id=WP_001384304.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 11051 12964 . + . ID=gene-AD39_RS05725;Name=yheS;gbkey=Gene;gene=yheS;gene_biotype=protein_coding;locus_tag=AD39_RS05725;old_locus_tag=AD39_3893 NZ_JJLH01000048.1 Protein Homology CDS 11051 12964 . + 0 ID=cds-WP_001469431.1;Parent=gene-AD39_RS05725;Dbxref=GenBank:WP_001469431.1;Name=WP_001469431.1;Ontology_term=GO:0005524;gbkey=CDS;gene=yheS;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312230.1;locus_tag=AD39_RS05725;product=ABC transporter ATP-binding protein;protein_id=WP_001469431.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 12964 13986 . + . ID=gene-AD39_RS05720;Name=yheT;gbkey=Gene;gene=yheT;gene_biotype=protein_coding;locus_tag=AD39_RS05720;old_locus_tag=AD39_3894 NZ_JJLH01000048.1 Protein Homology CDS 12964 13986 . + 0 ID=cds-WP_000057405.1;Parent=gene-AD39_RS05720;Dbxref=GenBank:WP_000057405.1;Name=WP_000057405.1;Ontology_term=GO:0016787;gbkey=CDS;gene=yheT;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709128.1;locus_tag=AD39_RS05720;product=hydrolase;protein_id=WP_000057405.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 13980 14198 . + . ID=gene-AD39_RS05715;Name=yheU;gbkey=Gene;gene=yheU;gene_biotype=protein_coding;locus_tag=AD39_RS05715;old_locus_tag=AD39_3895 NZ_JJLH01000048.1 Protein Homology CDS 13980 14198 . + 0 ID=cds-WP_000907085.1;Parent=gene-AD39_RS05715;Dbxref=GenBank:WP_000907085.1;Name=WP_000907085.1;gbkey=CDS;gene=yheU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312232.1;locus_tag=AD39_RS05715;product=YheU family protein;protein_id=WP_000907085.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 14252 15121 . + . ID=gene-AD39_RS05710;Name=prkB;gbkey=Gene;gene=prkB;gene_biotype=protein_coding;locus_tag=AD39_RS05710;old_locus_tag=AD39_3896 NZ_JJLH01000048.1 Protein Homology CDS 14252 15121 . + 0 ID=cds-WP_001274680.1;Parent=gene-AD39_RS05710;Dbxref=GenBank:WP_001274680.1;Name=WP_001274680.1;Ontology_term=GO:0005975,GO:0005524,GO:0008974;gbkey=CDS;gene=prkB;go_function=ATP binding|0005524||IEA,phosphoribulokinase activity|0008974||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417814.1;locus_tag=AD39_RS05710;product=phosphoribulokinase;protein_id=WP_001274680.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 15176 15580 . - . ID=gene-AD39_RS05705;Name=yhfA;gbkey=Gene;gene=yhfA;gene_biotype=protein_coding;locus_tag=AD39_RS05705;old_locus_tag=AD39_3897 NZ_JJLH01000048.1 Protein Homology CDS 15176 15580 . - 0 ID=cds-WP_001148908.1;Parent=gene-AD39_RS05705;Dbxref=GenBank:WP_001148908.1;Name=WP_001148908.1;gbkey=CDS;gene=yhfA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312234.1;locus_tag=AD39_RS05705;product=OsmC family protein;protein_id=WP_001148908.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 15882 16514 . + . ID=gene-AD39_RS05700;Name=crp;gbkey=Gene;gene=crp;gene_biotype=protein_coding;locus_tag=AD39_RS05700;old_locus_tag=AD39_3898 NZ_JJLH01000048.1 Protein Homology CDS 15882 16514 . + 0 ID=cds-WP_000242755.1;Parent=gene-AD39_RS05700;Dbxref=GenBank:WP_000242755.1;Name=WP_000242755.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=crp;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312235.1;locus_tag=AD39_RS05700;product=cAMP-activated global transcriptional regulator CRP;protein_id=WP_000242755.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 16565 18655 . + . ID=gene-AD39_RS05695;Name=yhfK;gbkey=Gene;gene=yhfK;gene_biotype=protein_coding;locus_tag=AD39_RS05695;old_locus_tag=AD39_3899 NZ_JJLH01000048.1 Protein Homology CDS 16565 18655 . + 0 ID=cds-WP_001295162.1;Parent=gene-AD39_RS05695;Dbxref=GenBank:WP_001295162.1;Name=WP_001295162.1;gbkey=CDS;gene=yhfK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312236.3;locus_tag=AD39_RS05695;product=YccS/YhfK family putative transporter;protein_id=WP_001295162.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 18722 19942 . - . ID=gene-AD39_RS05690;Name=argD;gbkey=Gene;gene=argD;gene_biotype=protein_coding;gene_synonym=dapC;locus_tag=AD39_RS05690;old_locus_tag=AD39_3900 NZ_JJLH01000048.1 Protein Homology CDS 18722 19942 . - 0 ID=cds-WP_000963785.1;Parent=gene-AD39_RS05690;Dbxref=GenBank:WP_000963785.1;Name=WP_000963785.1;gbkey=CDS;gene=argD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417818.1;locus_tag=AD39_RS05690;product=bifunctional acetylornithine/succinyldiaminopimelate transaminase;protein_id=WP_000963785.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 20028 20591 . - . ID=gene-AD39_RS05685;Name=pabA;gbkey=Gene;gene=pabA;gene_biotype=protein_coding;locus_tag=AD39_RS05685;old_locus_tag=AD39_3901 NZ_JJLH01000048.1 Protein Homology CDS 20028 20591 . - 0 ID=cds-WP_000601847.1;Parent=gene-AD39_RS05685;Dbxref=GenBank:WP_000601847.1;Name=WP_000601847.1;gbkey=CDS;gene=pabA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417819.1;locus_tag=AD39_RS05685;product=aminodeoxychorismate synthase component 2;protein_id=WP_000601847.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 20623 21225 . - . ID=gene-AD39_RS05680;Name=fic;gbkey=Gene;gene=fic;gene_biotype=protein_coding;locus_tag=AD39_RS05680;old_locus_tag=AD39_3902 NZ_JJLH01000048.1 Protein Homology CDS 20623 21225 . - 0 ID=cds-WP_001280624.1;Parent=gene-AD39_RS05680;Dbxref=GenBank:WP_001280624.1;Name=WP_001280624.1;gbkey=CDS;gene=fic;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417820.1;locus_tag=AD39_RS05680;product=putative adenosine monophosphate-protein transferase Fic;protein_id=WP_001280624.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 21215 21382 . - . ID=gene-AD39_RS0125370;Name=yhfG;gbkey=Gene;gene=yhfG;gene_biotype=protein_coding;locus_tag=AD39_RS0125370 NZ_JJLH01000048.1 Protein Homology CDS 21215 21382 . - 0 ID=cds-WP_000736860.1;Parent=gene-AD39_RS0125370;Dbxref=GenBank:WP_000736860.1;Name=WP_000736860.1;gbkey=CDS;gene=yhfG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709137.1;locus_tag=AD39_RS0125370;product=YhfG family protein;protein_id=WP_000736860.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 21487 22059 . - . ID=gene-AD39_RS05675;Name=ppiA;gbkey=Gene;gene=ppiA;gene_biotype=protein_coding;gene_synonym=rotA;locus_tag=AD39_RS05675;old_locus_tag=AD39_3903 NZ_JJLH01000048.1 Protein Homology CDS 21487 22059 . - 0 ID=cds-WP_001655910.1;Parent=gene-AD39_RS05675;Dbxref=GenBank:WP_001655910.1;Name=WP_001655910.1;gbkey=CDS;gene=ppiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312241.1;locus_tag=AD39_RS05675;product=peptidylprolyl isomerase A;protein_id=WP_001655910.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 22330 23511 . + . ID=gene-AD39_RS05670;Name=tsgA;gbkey=Gene;gene=tsgA;gene_biotype=protein_coding;locus_tag=AD39_RS05670;old_locus_tag=AD39_3905 NZ_JJLH01000048.1 Protein Homology CDS 22330 23511 . + 0 ID=cds-WP_000185247.1;Parent=gene-AD39_RS05670;Dbxref=GenBank:WP_000185247.1;Name=WP_000185247.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=tsgA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417823.1;locus_tag=AD39_RS05670;product=MFS transporter TsgA;protein_id=WP_000185247.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 23773 26316 . + . ID=gene-AD39_RS05665;Name=nirB;gbkey=Gene;gene=nirB;gene_biotype=protein_coding;locus_tag=AD39_RS05665;old_locus_tag=AD39_3907 NZ_JJLH01000048.1 Protein Homology CDS 23773 26316 . + 0 ID=cds-WP_000049213.1;Parent=gene-AD39_RS05665;Dbxref=GenBank:WP_000049213.1;Name=WP_000049213.1;gbkey=CDS;gene=nirB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709140.2;locus_tag=AD39_RS05665;product=NADPH-nitrite reductase large subunit;protein_id=WP_000049213.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 26313 26639 . + . ID=gene-AD39_RS05660;Name=nirD;gbkey=Gene;gene=nirD;gene_biotype=protein_coding;locus_tag=AD39_RS05660;old_locus_tag=AD39_3908 NZ_JJLH01000048.1 Protein Homology CDS 26313 26639 . + 0 ID=cds-WP_000084764.1;Parent=gene-AD39_RS05660;Dbxref=GenBank:WP_000084764.1;Name=WP_000084764.1;gbkey=CDS;gene=nirD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312244.1;locus_tag=AD39_RS05660;product=nitrite reductase small subunit NirD;protein_id=WP_000084764.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 26766 27572 . + . ID=gene-AD39_RS05655;Name=nirC;gbkey=Gene;gene=nirC;gene_biotype=protein_coding;locus_tag=AD39_RS05655;old_locus_tag=AD39_3909 NZ_JJLH01000048.1 Protein Homology CDS 26766 27572 . + 0 ID=cds-WP_000493556.1;Parent=gene-AD39_RS05655;Dbxref=GenBank:WP_000493556.1;Name=WP_000493556.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=nirC;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026212.2;locus_tag=AD39_RS05655;product=nitrite transporter NirC;protein_id=WP_000493556.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 27591 28964 . + . ID=gene-AD39_RS05650;Name=cysG;gbkey=Gene;gene=cysG;gene_biotype=protein_coding;locus_tag=AD39_RS05650;old_locus_tag=AD39_3910 NZ_JJLH01000048.1 Protein Homology CDS 27591 28964 . + 0 ID=cds-WP_000349863.1;Parent=gene-AD39_RS05650;Dbxref=GenBank:WP_000349863.1;Name=WP_000349863.1;Ontology_term=GO:0019354,GO:0004851,GO:0043115,GO:0051266,GO:0051287;gbkey=CDS;gene=cysG;go_function=uroporphyrin-III C-methyltransferase activity|0004851||IEA,precorrin-2 dehydrogenase activity|0043115||IEA,sirohydrochlorin ferrochelatase activity|0051266||IEA,NAD binding|0051287||IEA;go_process=siroheme biosynthetic process|0019354||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312246.1;locus_tag=AD39_RS05650;product=siroheme synthase CysG;protein_id=WP_000349863.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 29219 29386 . + . ID=gene-AD39_RS05645;Name=yhfL;gbkey=Gene;gene=yhfL;gene_biotype=protein_coding;locus_tag=AD39_RS05645;old_locus_tag=AD39_3911 NZ_JJLH01000048.1 Protein Homology CDS 29219 29386 . + 0 ID=cds-WP_001031834.1;Parent=gene-AD39_RS05645;Dbxref=GenBank:WP_001031834.1;Name=WP_001031834.1;gbkey=CDS;gene=yhfL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312247.1;locus_tag=AD39_RS05645;product=YhfL family protein;protein_id=WP_001031834.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 29493 30578 . - . ID=gene-AD39_RS05640;Name=yhfS;gbkey=Gene;gene=yhfS;gene_biotype=protein_coding;locus_tag=AD39_RS05640;old_locus_tag=AD39_3912 NZ_JJLH01000048.1 Protein Homology CDS 29493 30578 . - 0 ID=cds-WP_000847128.1;Parent=gene-AD39_RS05640;Dbxref=GenBank:WP_000847128.1;Name=WP_000847128.1;Ontology_term=GO:0009058,GO:0030170;gbkey=CDS;gene=yhfS;go_function=pyridoxal phosphate binding|0030170||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417835.1;locus_tag=AD39_RS05640;product=aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme;protein_id=WP_000847128.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 30590 31894 . - . ID=gene-AD39_RS05635;Name=yhfT;gbkey=Gene;gene=yhfT;gene_biotype=protein_coding;locus_tag=AD39_RS05635;old_locus_tag=AD39_3913 NZ_JJLH01000048.1 Protein Homology CDS 30590 31894 . - 0 ID=cds-WP_000366877.1;Parent=gene-AD39_RS05635;Dbxref=GenBank:WP_000366877.1;Name=WP_000366877.1;gbkey=CDS;gene=yhfT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709150.1;locus_tag=AD39_RS05635;product=YhfT family protein;protein_id=WP_000366877.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 31906 32259 . - . ID=gene-AD39_RS05630;Name=yhfU;gbkey=Gene;gene=yhfU;gene_biotype=protein_coding;locus_tag=AD39_RS05630;old_locus_tag=AD39_3914 NZ_JJLH01000048.1 Protein Homology CDS 31906 32259 . - 0 ID=cds-WP_001297518.1;Parent=gene-AD39_RS05630;Dbxref=GenBank:WP_001297518.1;Name=WP_001297518.1;gbkey=CDS;gene=yhfU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417837.2;locus_tag=AD39_RS05630;product=DUF2620 domain-containing protein;protein_id=WP_001297518.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 32270 33148 . - . ID=gene-AD39_RS05625;Name=php;gbkey=Gene;gene=php;gene_biotype=protein_coding;locus_tag=AD39_RS05625;old_locus_tag=AD39_3915 NZ_JJLH01000048.1 Protein Homology CDS 32270 33148 . - 0 ID=cds-WP_000020844.1;Parent=gene-AD39_RS05625;Dbxref=GenBank:WP_000020844.1;Name=WP_000020844.1;gbkey=CDS;gene=php;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417838.1;locus_tag=AD39_RS05625;product=phosphotriesterase-related protein;protein_id=WP_000020844.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 33145 34371 . - . ID=gene-AD39_RS05620;Name=yhfW;gbkey=Gene;gene=yhfW;gene_biotype=protein_coding;locus_tag=AD39_RS05620;old_locus_tag=AD39_3916 NZ_JJLH01000048.1 Protein Homology CDS 33145 34371 . - 0 ID=cds-WP_000090624.1;Parent=gene-AD39_RS05620;Dbxref=GenBank:WP_000090624.1;Name=WP_000090624.1;Ontology_term=GO:0008973;gbkey=CDS;gene=yhfW;go_function=phosphopentomutase activity|0008973||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709153.1;locus_tag=AD39_RS05620;product=phosphopentomutase;protein_id=WP_000090624.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 34371 35534 . - . ID=gene-AD39_RS05615;Name=yhfX;gbkey=Gene;gene=yhfX;gene_biotype=protein_coding;locus_tag=AD39_RS05615;old_locus_tag=AD39_3917 NZ_JJLH01000048.1 Protein Homology CDS 34371 35534 . - 0 ID=cds-WP_000497343.1;Parent=gene-AD39_RS05615;Dbxref=GenBank:WP_000497343.1;Name=WP_000497343.1;gbkey=CDS;gene=yhfX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709154.1;locus_tag=AD39_RS05615;product=YhfX family PLP-dependent enzyme;protein_id=WP_000497343.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 35618 35980 . - . ID=gene-AD39_RS05610;Name=yhfY;gbkey=Gene;gene=yhfY;gene_biotype=protein_coding;locus_tag=AD39_RS05610;old_locus_tag=AD39_3918 NZ_JJLH01000048.1 Protein Homology CDS 35618 35980 . - 0 ID=cds-WP_001295165.1;Parent=gene-AD39_RS05610;Dbxref=GenBank:WP_001295165.1;Name=WP_001295165.1;gbkey=CDS;gene=yhfY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417841.2;locus_tag=AD39_RS05610;product=PRD domain protein;protein_id=WP_001295165.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 35997 36902 . - . ID=gene-AD39_RS05605;Name=yhfZ;gbkey=Gene;gene=yhfZ;gene_biotype=protein_coding;locus_tag=AD39_RS05605;old_locus_tag=AD39_3919 NZ_JJLH01000048.1 Protein Homology CDS 35997 36902 . - 0 ID=cds-WP_001254820.1;Parent=gene-AD39_RS05605;Dbxref=GenBank:WP_001254820.1;Name=WP_001254820.1;gbkey=CDS;gene=yhfZ;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026214.1;locus_tag=AD39_RS05605;product=GntR family transcriptional regulator YhfZ;protein_id=WP_001254820.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 37171 38175 . - . ID=gene-AD39_RS05600;Name=trpS;gbkey=Gene;gene=trpS;gene_biotype=protein_coding;locus_tag=AD39_RS05600;old_locus_tag=AD39_3920 NZ_JJLH01000048.1 Protein Homology CDS 37171 38175 . - 0 ID=cds-WP_000165553.1;Parent=gene-AD39_RS05600;Dbxref=GenBank:WP_000165553.1;Name=WP_000165553.1;Ontology_term=GO:0006436,GO:0000166,GO:0004830,GO:0005524;gbkey=CDS;gene=trpS;go_function=nucleotide binding|0000166||IEA,tryptophan-tRNA ligase activity|0004830||IEA,ATP binding|0005524||IEA;go_process=tryptophanyl-tRNA aminoacylation|0006436||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417843.1;locus_tag=AD39_RS05600;product=tryptophan--tRNA ligase;protein_id=WP_000165553.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 38168 38926 . - . ID=gene-AD39_RS05595;Name=gph;gbkey=Gene;gene=gph;gene_biotype=protein_coding;locus_tag=AD39_RS05595;old_locus_tag=AD39_3921 NZ_JJLH01000048.1 Protein Homology CDS 38168 38926 . - 0 ID=cds-WP_001031727.1;Parent=gene-AD39_RS05595;Dbxref=GenBank:WP_001031727.1;Name=WP_001031727.1;Ontology_term=GO:0005975,GO:0008967;gbkey=CDS;gene=gph;go_function=phosphoglycolate phosphatase activity|0008967||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417844.1;locus_tag=AD39_RS05595;product=phosphoglycolate phosphatase;protein_id=WP_001031727.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 38919 39596 . - . ID=gene-AD39_RS05590;Name=rpe;gbkey=Gene;gene=rpe;gene_biotype=protein_coding;locus_tag=AD39_RS05590;old_locus_tag=AD39_3922 NZ_JJLH01000048.1 Protein Homology CDS 38919 39596 . - 0 ID=cds-WP_000816280.1;Parent=gene-AD39_RS05590;Dbxref=GenBank:WP_000816280.1;Name=WP_000816280.1;Ontology_term=GO:0006098,GO:0004750;gbkey=CDS;gene=rpe;go_function=D-ribulose-phosphate 3-epimerase activity|0004750||IEA;go_process=pentose-phosphate shunt|0006098||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312255.1;locus_tag=AD39_RS05590;product=ribulose-phosphate 3-epimerase;protein_id=WP_000816280.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 39614 40450 . - . ID=gene-AD39_RS05585;Name=dam;gbkey=Gene;gene=dam;gene_biotype=protein_coding;locus_tag=AD39_RS05585;old_locus_tag=AD39_3923 NZ_JJLH01000048.1 Protein Homology CDS 39614 40450 . - 0 ID=cds-WP_001392774.1;Parent=gene-AD39_RS05585;Dbxref=GenBank:WP_001392774.1;Name=WP_001392774.1;Ontology_term=GO:0003676,GO:0009007;gbkey=CDS;gene=dam;go_function=nucleic acid binding|0003676||IEA,site-specific DNA-methyltransferase (adenine-specific) activity|0009007||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312256.1;locus_tag=AD39_RS05585;product=adenine-specific DNA-methyltransferase;protein_id=WP_001392774.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 40557 41843 . - . ID=gene-AD39_RS05580;Name=damX;gbkey=Gene;gene=damX;gene_biotype=protein_coding;locus_tag=AD39_RS05580;old_locus_tag=AD39_3924 NZ_JJLH01000048.1 Protein Homology CDS 40557 41843 . - 0 ID=cds-WP_000343181.1;Parent=gene-AD39_RS05580;Dbxref=GenBank:WP_000343181.1;Name=WP_000343181.1;Ontology_term=GO:0032506,GO:0042834;gbkey=CDS;gene=damX;go_function=peptidoglycan binding|0042834||IEA;go_process=cytokinetic process|0032506||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312257.1;locus_tag=AD39_RS05580;product=cell division protein DamX;protein_id=WP_000343181.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 41935 43023 . - . ID=gene-AD39_RS05575;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=AD39_RS05575;old_locus_tag=AD39_3925 NZ_JJLH01000048.1 Protein Homology CDS 41935 43023 . - 0 ID=cds-WP_000439846.1;Parent=gene-AD39_RS05575;Dbxref=GenBank:WP_000439846.1;Name=WP_000439846.1;Ontology_term=GO:0009073,GO:0009423,GO:0003856,GO:0005737;gbkey=CDS;gene=aroB;go_component=cytoplasm|0005737||IEA;go_function=3-dehydroquinate synthase activity|0003856||IEA;go_process=aromatic amino acid family biosynthetic process|0009073||IEA,chorismate biosynthetic process|0009423||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417848.1;locus_tag=AD39_RS05575;product=3-dehydroquinate synthase;protein_id=WP_000439846.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 43080 43601 . - . ID=gene-AD39_RS05570;Name=aroK;gbkey=Gene;gene=aroK;gene_biotype=protein_coding;locus_tag=AD39_RS05570;old_locus_tag=AD39_3926 NZ_JJLH01000048.1 Protein Homology CDS 43080 43601 . - 0 ID=cds-WP_000818618.1;Parent=gene-AD39_RS05570;Dbxref=GenBank:WP_000818618.1;Name=WP_000818618.1;gbkey=CDS;gene=aroK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004709337.1;locus_tag=AD39_RS05570;product=shikimate kinase AroK;protein_id=WP_000818618.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 44002 45240 . - . ID=gene-AD39_RS05565;Name=hofQ;gbkey=Gene;gene=hofQ;gene_biotype=protein_coding;locus_tag=AD39_RS05565;old_locus_tag=AD39_3927 NZ_JJLH01000048.1 Protein Homology CDS 44002 45240 . - 0 ID=cds-WP_000815987.1;Parent=gene-AD39_RS05565;Dbxref=GenBank:WP_000815987.1;Name=WP_000815987.1;Ontology_term=GO:0009306,GO:0019867;gbkey=CDS;gene=hofQ;go_component=outer membrane|0019867||IEA;go_process=protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417850.1;locus_tag=AD39_RS05565;product=DNA uptake porin HofQ;protein_id=WP_000815987.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 45152 45556 . - . ID=gene-AD39_RS05560;Name=hofP;gbkey=Gene;gene=hofP;gene_biotype=protein_coding;locus_tag=AD39_RS05560;old_locus_tag=AD39_3928 NZ_JJLH01000048.1 Protein Homology CDS 45152 45556 . - 0 ID=cds-WP_001264141.1;Parent=gene-AD39_RS05560;Dbxref=GenBank:WP_001264141.1;Name=WP_001264141.1;gbkey=CDS;gene=hofP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417851.4;locus_tag=AD39_RS05560;product=DNA utilization protein HofP;protein_id=WP_001264141.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 45546 45986 . - . ID=gene-AD39_RS05555;Name=hofO;gbkey=Gene;gene=hofO;gene_biotype=protein_coding;locus_tag=AD39_RS05555;old_locus_tag=AD39_3929 NZ_JJLH01000048.1 Protein Homology CDS 45546 45986 . - 0 ID=cds-WP_001055763.1;Parent=gene-AD39_RS05555;Dbxref=GenBank:WP_001055763.1;Name=WP_001055763.1;gbkey=CDS;gene=hofO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417852.1;locus_tag=AD39_RS05555;product=DNA utilization protein HofO;protein_id=WP_001055763.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 45970 46509 . - . ID=gene-AD39_RS05550;Name=hofN;gbkey=Gene;gene=hofN;gene_biotype=protein_coding;locus_tag=AD39_RS05550;old_locus_tag=AD39_3930 NZ_JJLH01000048.1 Protein Homology CDS 45970 46509 . - 0 ID=cds-WP_001069315.1;Parent=gene-AD39_RS05550;Dbxref=GenBank:WP_001069315.1;Name=WP_001069315.1;gbkey=CDS;gene=hofN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417853.1;locus_tag=AD39_RS05550;product=DNA utilization protein HofN;protein_id=WP_001069315.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 46509 47288 . - . ID=gene-AD39_RS05545;Name=hofM;gbkey=Gene;gene=hofM;gene_biotype=protein_coding;locus_tag=AD39_RS05545;old_locus_tag=AD39_3931 NZ_JJLH01000048.1 Protein Homology CDS 46509 47288 . - 0 ID=cds-WP_001402589.1;Parent=gene-AD39_RS05545;Dbxref=GenBank:WP_001402589.1;Name=WP_001402589.1;gbkey=CDS;gene=hofM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417854.4;locus_tag=AD39_RS05545;product=DNA utilization protein HofM;protein_id=WP_001402589.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 47408 49960 . + . ID=gene-AD39_RS05540;Name=mrcA;gbkey=Gene;gene=mrcA;gene_biotype=protein_coding;locus_tag=AD39_RS05540;old_locus_tag=AD39_3932 NZ_JJLH01000048.1 Protein Homology CDS 47408 49960 . + 0 ID=cds-WP_000673804.1;Parent=gene-AD39_RS05540;Dbxref=GenBank:WP_000673804.1;Name=WP_000673804.1;Ontology_term=GO:0008658;gbkey=CDS;gene=mrcA;go_function=penicillin binding|0008658||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417855.4;locus_tag=AD39_RS05540;product=peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA;protein_id=WP_000673804.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 50125 50685 . - . ID=gene-AD39_RS05535;Name=nudE;gbkey=Gene;gene=nudE;gene_biotype=protein_coding;locus_tag=AD39_RS05535;old_locus_tag=AD39_3933 NZ_JJLH01000048.1 Protein Homology CDS 50125 50685 . - 0 ID=cds-WP_000045744.1;Parent=gene-AD39_RS05535;Dbxref=GenBank:WP_000045744.1;Name=WP_000045744.1;Ontology_term=GO:0016787;gbkey=CDS;gene=nudE;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417856.1;locus_tag=AD39_RS05535;product=ADP compounds hydrolase NudE;protein_id=WP_000045744.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 51005 53140 . + . ID=gene-AD39_RS05530;Name=igaA;gbkey=Gene;gene=igaA;gene_biotype=protein_coding;locus_tag=AD39_RS05530;old_locus_tag=AD39_3935 NZ_JJLH01000048.1 Protein Homology CDS 51005 53140 . + 0 ID=cds-WP_000104549.1;Parent=gene-AD39_RS05530;Dbxref=GenBank:WP_000104549.1;Name=WP_000104549.1;gbkey=CDS;gene=igaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417857.1;locus_tag=AD39_RS05530;product=intracellular growth attenuator protein IgaA;protein_id=WP_000104549.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 53205 53873 . + . ID=gene-AD39_RS05525;Name=yrfG;gbkey=Gene;gene=yrfG;gene_biotype=protein_coding;locus_tag=AD39_RS05525;old_locus_tag=AD39_3936 NZ_JJLH01000048.1 Protein Homology CDS 53205 53873 . + 0 ID=cds-WP_023155832.1;Parent=gene-AD39_RS05525;Dbxref=GenBank:WP_023155832.1;Name=WP_023155832.1;gbkey=CDS;gene=yrfG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312268.2;locus_tag=AD39_RS05525;product=GMP/IMP nucleotidase;protein_id=WP_023155832.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 53884 54285 . + . ID=gene-AD39_RS05520;Name=hslR;gbkey=Gene;gene=hslR;gene_biotype=protein_coding;locus_tag=AD39_RS05520;old_locus_tag=AD39_3937 NZ_JJLH01000048.1 Protein Homology CDS 53884 54285 . + 0 ID=cds-WP_000660599.1;Parent=gene-AD39_RS05520;Dbxref=GenBank:WP_000660599.1;Name=WP_000660599.1;gbkey=CDS;gene=hslR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312269.1;locus_tag=AD39_RS05520;product=ribosome-associated heat shock protein Hsp15;protein_id=WP_000660599.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 54310 55188 . + . ID=gene-AD39_RS05515;Name=hslO;gbkey=Gene;gene=hslO;gene_biotype=protein_coding;locus_tag=AD39_RS05515;old_locus_tag=AD39_3938 NZ_JJLH01000048.1 Protein Homology CDS 54310 55188 . + 0 ID=cds-WP_001402591.1;Parent=gene-AD39_RS05515;Dbxref=GenBank:WP_001402591.1;Name=WP_001402591.1;Ontology_term=GO:0006457,GO:0051082;gbkey=CDS;gene=hslO;go_function=unfolded protein binding|0051082||IEA;go_process=protein folding|0006457||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417860.2;locus_tag=AD39_RS05515;product=Hsp33 family molecular chaperone HslO;protein_id=WP_001402591.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 55251 56975 . - . ID=gene-AD39_RS05510;Name=yhgE;gbkey=Gene;gene=yhgE;gene_biotype=protein_coding;locus_tag=AD39_RS05510;old_locus_tag=AD39_3939 NZ_JJLH01000048.1 Protein Homology CDS 55251 56975 . - 0 ID=cds-WP_000370820.1;Parent=gene-AD39_RS05510;Dbxref=GenBank:WP_000370820.1;Name=WP_000370820.1;Ontology_term=GO:0005886;gbkey=CDS;gene=yhgE;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312271.1;locus_tag=AD39_RS05510;product=DUF4153 domain-containing protein;protein_id=WP_000370820.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 57353 58975 . + . ID=gene-AD39_RS05505;Name=pckA;gbkey=Gene;gene=pckA;gene_biotype=protein_coding;locus_tag=AD39_RS05505;old_locus_tag=AD39_3940 NZ_JJLH01000048.1 Protein Homology CDS 57353 58975 . + 0 ID=cds-WP_001298201.1;Parent=gene-AD39_RS05505;Dbxref=GenBank:WP_001298201.1;Name=WP_001298201.1;Ontology_term=GO:0006094,GO:0004612;gbkey=CDS;gene=pckA;go_function=phosphoenolpyruvate carboxykinase (ATP) activity|0004612||IEA;go_process=gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312272.1;locus_tag=AD39_RS05505;product=phosphoenolpyruvate carboxykinase (ATP);protein_id=WP_001298201.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 59092 59409 . + . ID=gene-AD39_RS0125380;Name=AD39_RS0125380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125380 NZ_JJLH01000048.1 Protein Homology CDS 59092 59409 . + 0 ID=cds-WP_000493758.1;Parent=gene-AD39_RS0125380;Dbxref=GenBank:WP_000493758.1;Name=WP_000493758.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000493756.1;locus_tag=AD39_RS0125380;product=type II toxin-antitoxin system RelE/ParE family toxin;protein_id=WP_000493758.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 59468 59764 . + . ID=gene-AD39_RS05500;Name=nadS;gbkey=Gene;gene=nadS;gene_biotype=protein_coding;locus_tag=AD39_RS05500;old_locus_tag=AD39_3943 NZ_JJLH01000048.1 Protein Homology CDS 59468 59764 . + 0 ID=cds-WP_000650976.1;Parent=gene-AD39_RS05500;Dbxref=GenBank:WP_000650976.1;Name=WP_000650976.1;gbkey=CDS;gene=nadS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_005227164.1;locus_tag=AD39_RS05500;product=NadS family protein;protein_id=WP_000650976.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 59795 61147 . - . ID=gene-AD39_RS05495;Name=envZ;gbkey=Gene;gene=envZ;gene_biotype=protein_coding;locus_tag=AD39_RS05495;old_locus_tag=AD39_3944 NZ_JJLH01000048.1 Protein Homology CDS 59795 61147 . - 0 ID=cds-WP_001253696.1;Parent=gene-AD39_RS05495;Dbxref=GenBank:WP_001253696.1;Name=WP_001253696.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=envZ;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417863.1;locus_tag=AD39_RS05495;product=two-component system sensor histidine kinase EnvZ;protein_id=WP_001253696.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 61144 61863 . - . ID=gene-AD39_RS05490;Name=ompR;gbkey=Gene;gene=ompR;gene_biotype=protein_coding;locus_tag=AD39_RS05490;old_locus_tag=AD39_3945 NZ_JJLH01000048.1 Protein Homology CDS 61144 61863 . - 0 ID=cds-WP_001157751.1;Parent=gene-AD39_RS05490;Dbxref=GenBank:WP_001157751.1;Name=WP_001157751.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=ompR;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007374840.1;locus_tag=AD39_RS05490;product=osmolarity response regulator transcription factor OmpR;protein_id=WP_001157751.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 62091 62567 . + . ID=gene-AD39_RS05485;Name=greB;gbkey=Gene;gene=greB;gene_biotype=protein_coding;locus_tag=AD39_RS05485;old_locus_tag=AD39_3946 NZ_JJLH01000048.1 Protein Homology CDS 62091 62567 . + 0 ID=cds-WP_000856737.1;Parent=gene-AD39_RS05485;Dbxref=GenBank:WP_000856737.1;Name=WP_000856737.1;Ontology_term=GO:0032784,GO:0003677;gbkey=CDS;gene=greB;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026216.2;locus_tag=AD39_RS05485;product=transcription elongation factor GreB;protein_id=WP_000856737.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 62664 64985 . + . ID=gene-AD39_RS05480;Name=yhgF;gbkey=Gene;gene=yhgF;gene_biotype=protein_coding;locus_tag=AD39_RS05480;old_locus_tag=AD39_3947 NZ_JJLH01000048.1 Protein Homology CDS 62664 64985 . + 0 ID=cds-WP_001688909.1;Parent=gene-AD39_RS05480;Dbxref=GenBank:WP_001688909.1;Name=WP_001688909.1;Ontology_term=GO:0003676,GO:0003729,GO:0005829;gbkey=CDS;gene=yhgF;go_component=cytosol|0005829||IEA;go_function=nucleic acid binding|0003676||IEA,mRNA binding|0003729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417866.4;locus_tag=AD39_RS05480;product=Tex family protein;protein_id=WP_001688909.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 65423 65650 . + . ID=gene-AD39_RS05475;Name=feoA;gbkey=Gene;gene=feoA;gene_biotype=protein_coding;locus_tag=AD39_RS05475;old_locus_tag=AD39_3949 NZ_JJLH01000048.1 Protein Homology CDS 65423 65650 . + 0 ID=cds-WP_001200452.1;Parent=gene-AD39_RS05475;Dbxref=GenBank:WP_001200452.1;Name=WP_001200452.1;gbkey=CDS;gene=feoA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312277.1;locus_tag=AD39_RS05475;product=ferrous iron transporter A;protein_id=WP_001200452.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 65667 67988 . + . ID=gene-AD39_RS05470;Name=feoB;gbkey=Gene;gene=feoB;gene_biotype=protein_coding;locus_tag=AD39_RS05470;old_locus_tag=AD39_3950 NZ_JJLH01000048.1 Protein Homology CDS 65667 67988 . + 0 ID=cds-WP_004004759.1;Parent=gene-AD39_RS05470;Dbxref=GenBank:WP_004004759.1;Name=WP_004004759.1;Ontology_term=GO:0006826,GO:0005525,GO:0015093,GO:0016020;gbkey=CDS;gene=feoB;go_component=membrane|0016020||IEA;go_function=GTP binding|0005525||IEA,ferrous iron transmembrane transporter activity|0015093||IEA;go_process=iron ion transport|0006826||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417868.1;locus_tag=AD39_RS05470;product=Fe(2+) transporter permease subunit FeoB;protein_id=WP_004004759.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 67988 68224 . + . ID=gene-AD39_RS05465;Name=feoC;gbkey=Gene;gene=feoC;gene_biotype=protein_coding;locus_tag=AD39_RS05465;old_locus_tag=AD39_3951 NZ_JJLH01000048.1 Protein Homology CDS 67988 68224 . + 0 ID=cds-WP_000157586.1;Parent=gene-AD39_RS05465;Dbxref=GenBank:WP_000157586.1;Name=WP_000157586.1;gbkey=CDS;gene=feoC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312279.1;locus_tag=AD39_RS05465;product=[Fe-S]-dependent transcriptional repressor FeoC;protein_id=WP_000157586.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 68427 69305 . + . ID=gene-AD39_RS05460;Name=rpnA;gbkey=Gene;gene=rpnA;gene_biotype=protein_coding;locus_tag=AD39_RS05460;old_locus_tag=AD39_3952 NZ_JJLH01000048.1 Protein Homology CDS 68427 69305 . + 0 ID=cds-WP_032283563.1;Parent=gene-AD39_RS05460;Dbxref=GenBank:WP_032283563.1;Name=WP_032283563.1;gbkey=CDS;gene=rpnA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417870.1;locus_tag=AD39_RS05460;product=recombination-promoting nuclease RpnA;protein_id=WP_032283563.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 69334 70104 . - . ID=gene-AD39_RS05455;Name=bioH;gbkey=Gene;gene=bioH;gene_biotype=protein_coding;locus_tag=AD39_RS05455;old_locus_tag=AD39_3953 NZ_JJLH01000048.1 Protein Homology CDS 69334 70104 . - 0 ID=cds-WP_001060071.1;Parent=gene-AD39_RS05455;Dbxref=GenBank:WP_001060071.1;Name=WP_001060071.1;Ontology_term=GO:0052689;gbkey=CDS;gene=bioH;go_function=carboxylic ester hydrolase activity|0052689||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417871.1;locus_tag=AD39_RS05455;product=pimeloyl-ACP methyl ester esterase BioH;protein_id=WP_001060071.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 70142 70825 . + . ID=gene-AD39_RS05450;Name=gntX;gbkey=Gene;gene=gntX;gene_biotype=protein_coding;locus_tag=AD39_RS05450;old_locus_tag=AD39_3955 NZ_JJLH01000048.1 Protein Homology CDS 70142 70825 . + 0 ID=cds-WP_001297265.1;Parent=gene-AD39_RS05450;Dbxref=GenBank:WP_001297265.1;Name=WP_001297265.1;Ontology_term=GO:0009116;gbkey=CDS;gene=gntX;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417872.2;locus_tag=AD39_RS05450;product=DNA utilization protein GntX;protein_id=WP_001297265.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 70884 71459 . + . ID=gene-AD39_RS05445;Name=nfuA;gbkey=Gene;gene=nfuA;gene_biotype=protein_coding;locus_tag=AD39_RS05445;old_locus_tag=AD39_3956 NZ_JJLH01000048.1 Protein Homology CDS 70884 71459 . + 0 ID=cds-WP_000619389.1;Parent=gene-AD39_RS05445;Dbxref=GenBank:WP_000619389.1;Name=WP_000619389.1;Ontology_term=GO:0016226,GO:0051604,GO:0051539;gbkey=CDS;gene=nfuA;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA,protein maturation|0051604||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016942932.1;locus_tag=AD39_RS05445;product=Fe-S biogenesis protein NfuA;protein_id=WP_000619389.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 71820 73136 . + . ID=gene-AD39_RS05440;Name=gntT;gbkey=Gene;gene=gntT;gene_biotype=protein_coding;locus_tag=AD39_RS05440;old_locus_tag=AD39_3957 NZ_JJLH01000048.1 Protein Homology CDS 71820 73136 . + 0 ID=cds-WP_001131758.1;Parent=gene-AD39_RS05440;Dbxref=GenBank:WP_001131758.1;Name=WP_001131758.1;gbkey=CDS;gene=gntT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312284.1;locus_tag=AD39_RS05440;product=gluconate transporter;protein_id=WP_001131758.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 73181 75265 . - . ID=gene-AD39_RS05435;Name=malQ;gbkey=Gene;gene=malQ;gene_biotype=protein_coding;locus_tag=AD39_RS05435;old_locus_tag=AD39_3958 NZ_JJLH01000048.1 Protein Homology CDS 73181 75265 . - 0 ID=cds-WP_000444350.1;Parent=gene-AD39_RS05435;Dbxref=GenBank:WP_000444350.1;Name=WP_000444350.1;Ontology_term=GO:0005975,GO:0004134;gbkey=CDS;gene=malQ;go_function=4-alpha-glucanotransferase activity|0004134||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417875.1;locus_tag=AD39_RS05435;product=4-alpha-glucanotransferase;protein_id=WP_000444350.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 75275 77668 . - . ID=gene-AD39_RS05430;Name=malP;gbkey=Gene;gene=malP;gene_biotype=protein_coding;locus_tag=AD39_RS05430;old_locus_tag=AD39_3959 NZ_JJLH01000048.1 Protein Homology CDS 75275 77668 . - 0 ID=cds-WP_000081909.1;Parent=gene-AD39_RS05430;Dbxref=GenBank:WP_000081909.1;Name=WP_000081909.1;Ontology_term=GO:0005975,GO:0008184,GO:0030170;gbkey=CDS;gene=malP;go_function=glycogen phosphorylase activity|0008184||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026218.1;locus_tag=AD39_RS05430;product=maltodextrin phosphorylase;protein_id=WP_000081909.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 78280 80985 . + . ID=gene-AD39_RS05425;Name=malT;gbkey=Gene;gene=malT;gene_biotype=protein_coding;locus_tag=AD39_RS05425;old_locus_tag=AD39_3960 NZ_JJLH01000048.1 Protein Homology CDS 78280 80985 . + 0 ID=cds-WP_000906970.1;Parent=gene-AD39_RS05425;Dbxref=GenBank:WP_000906970.1;Name=WP_000906970.1;Ontology_term=GO:0006355,GO:0003677,GO:0005515;gbkey=CDS;gene=malT;go_function=DNA binding|0003677||IEA,protein binding|0005515||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312287.1;locus_tag=AD39_RS05425;product=HTH-type transcriptional regulator MalT;protein_id=WP_000906970.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 81028 82044 . - . ID=gene-AD39_RS05420;Name=rtcA;gbkey=Gene;gene=rtcA;gene_biotype=protein_coding;locus_tag=AD39_RS05420;old_locus_tag=AD39_3961 NZ_JJLH01000048.1 Protein Homology CDS 81028 82044 . - 0 ID=cds-WP_032283572.1;Parent=gene-AD39_RS05420;Dbxref=GenBank:WP_032283572.1;Name=WP_032283572.1;Ontology_term=GO:0006396,GO:0003963;gbkey=CDS;gene=rtcA;go_function=RNA-3'-phosphate cyclase activity|0003963||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026219.1;locus_tag=AD39_RS05420;product=RNA 3'-terminal phosphate cyclase;protein_id=WP_032283572.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 82048 83274 . - . ID=gene-AD39_RS05415;Name=rtcB;gbkey=Gene;gene=rtcB;gene_biotype=protein_coding;locus_tag=AD39_RS05415;old_locus_tag=AD39_3962 NZ_JJLH01000048.1 Protein Homology CDS 82048 83274 . - 0 ID=cds-WP_001105435.1;Parent=gene-AD39_RS05415;Dbxref=GenBank:WP_001105435.1;Name=WP_001105435.1;gbkey=CDS;gene=rtcB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417879.1;locus_tag=AD39_RS05415;product=RNA-splicing ligase RtcB;protein_id=WP_001105435.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 83463 85061 . + . ID=gene-AD39_RS05410;Name=rtcR;gbkey=Gene;gene=rtcR;gene_biotype=protein_coding;locus_tag=AD39_RS05410;old_locus_tag=AD39_3963 NZ_JJLH01000048.1 Protein Homology CDS 83463 85061 . + 0 ID=cds-WP_001232966.1;Parent=gene-AD39_RS05410;Dbxref=GenBank:WP_001232966.1;Name=WP_001232966.1;gbkey=CDS;gene=rtcR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417880.1;locus_tag=AD39_RS05410;product=DNA-binding transcriptional regulator RtcR;protein_id=WP_001232966.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 85043 85801 . - . ID=gene-AD39_RS05405;Name=AD39_RS05405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS05405;old_locus_tag=AD39_3964 NZ_JJLH01000048.1 Protein Homology CDS 85043 85801 . - 0 ID=cds-WP_000815099.1;Parent=gene-AD39_RS05405;Dbxref=GenBank:WP_000815099.1;Name=WP_000815099.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000815090.1;locus_tag=AD39_RS05405;product=DeoR/GlpR family transcriptional regulator;protein_id=WP_000815099.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 85818 86648 . - . ID=gene-AD39_RS05400;Name=glpG;gbkey=Gene;gene=glpG;gene_biotype=protein_coding;locus_tag=AD39_RS05400;old_locus_tag=AD39_3965 NZ_JJLH01000048.1 Protein Homology CDS 85818 86648 . - 0 ID=cds-WP_000928731.1;Parent=gene-AD39_RS05400;Dbxref=GenBank:WP_000928731.1;Name=WP_000928731.1;Ontology_term=GO:0006508,GO:0004252,GO:0016020;gbkey=CDS;gene=glpG;go_component=membrane|0016020||IEA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026220.1;locus_tag=AD39_RS05400;product=rhomboid family intramembrane serine protease GlpG;protein_id=WP_000928731.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 86693 87019 . - . ID=gene-AD39_RS05395;Name=glpE;gbkey=Gene;gene=glpE;gene_biotype=protein_coding;locus_tag=AD39_RS05395;old_locus_tag=AD39_3966 NZ_JJLH01000048.1 Protein Homology CDS 86693 87019 . - 0 ID=cds-WP_000371934.1;Parent=gene-AD39_RS05395;Dbxref=GenBank:WP_000371934.1;Name=WP_000371934.1;Ontology_term=GO:0004792;gbkey=CDS;gene=glpE;go_function=thiosulfate-cyanide sulfurtransferase activity|0004792||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417883.1;locus_tag=AD39_RS05395;product=thiosulfate sulfurtransferase GlpE;protein_id=WP_000371934.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 87209 88714 . + . ID=gene-AD39_RS05390;Name=glpD;gbkey=Gene;gene=glpD;gene_biotype=protein_coding;locus_tag=AD39_RS05390;old_locus_tag=AD39_3967 NZ_JJLH01000048.1 Protein Homology CDS 87209 88714 . + 0 ID=cds-WP_003580104.1;Parent=gene-AD39_RS05390;Dbxref=GenBank:WP_003580104.1;Name=WP_003580104.1;Ontology_term=GO:0006072,GO:0004368,GO:0009331;gbkey=CDS;gene=glpD;go_component=glycerol-3-phosphate dehydrogenase (FAD) complex|0009331||IEA;go_function=glycerol-3-phosphate dehydrogenase (quinone) activity|0004368||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312296.1;locus_tag=AD39_RS05390;product=glycerol-3-phosphate dehydrogenase;protein_id=WP_003580104.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 88766 89371 . - . ID=gene-AD39_RS05385;Name=AD39_RS05385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS05385;old_locus_tag=AD39_3968 NZ_JJLH01000048.1 Protein Homology CDS 88766 89371 . - 0 ID=cds-WP_021534551.1;Parent=gene-AD39_RS05385;Dbxref=GenBank:WP_021534551.1;Name=WP_021534551.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000589351.1;locus_tag=AD39_RS05385;product=hypothetical protein;protein_id=WP_021534551.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 89374 90141 . - . ID=gene-AD39_RS05380;Name=AD39_RS05380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS05380;old_locus_tag=AD39_3969 NZ_JJLH01000048.1 Protein Homology CDS 89374 90141 . - 0 ID=cds-WP_032254817.1;Parent=gene-AD39_RS05380;Dbxref=GenBank:WP_032254817.1;Name=WP_032254817.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001182130.1;locus_tag=AD39_RS05380;product=hypothetical protein;protein_id=WP_032254817.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 90144 90854 . - . ID=gene-AD39_RS05375;Name=AD39_RS05375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS05375;old_locus_tag=AD39_3970 NZ_JJLH01000048.1 Protein Homology CDS 90144 90854 . - 0 ID=cds-WP_000424548.1;Parent=gene-AD39_RS05375;Dbxref=GenBank:WP_000424548.1;Name=WP_000424548.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000424214.1;locus_tag=AD39_RS05375;product=hypothetical protein;protein_id=WP_000424548.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 90870 92378 . - . ID=gene-AD39_RS05370;Name=AD39_RS05370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS05370;old_locus_tag=AD39_3971 NZ_JJLH01000048.1 Protein Homology CDS 90870 92378 . - 0 ID=cds-WP_148725050.1;Parent=gene-AD39_RS05370;Dbxref=GenBank:WP_148725050.1;Name=WP_148725050.1;Ontology_term=GO:0006817,GO:0022857,GO:0042626,GO:0140359,GO:0055052;gbkey=CDS;go_component=ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=transmembrane transporter activity|0022857||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001443257.1;locus_tag=AD39_RS05370;product=PstS family phosphate ABC transporter substrate-binding protein;protein_id=WP_148725050.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 92503 94950 . - . ID=gene-AD39_RS05365;Name=glgP;gbkey=Gene;gene=glgP;gene_biotype=protein_coding;locus_tag=AD39_RS05365;old_locus_tag=AD39_3972 NZ_JJLH01000048.1 Protein Homology CDS 92503 94950 . - 0 ID=cds-WP_032287626.1;Parent=gene-AD39_RS05365;Dbxref=GenBank:WP_032287626.1;Name=WP_032287626.1;Ontology_term=GO:0005975,GO:0008184;gbkey=CDS;gene=glgP;go_function=glycogen phosphorylase activity|0008184||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417886.1;locus_tag=AD39_RS05365;product=glycogen phosphorylase;protein_id=WP_032287626.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 94969 96402 . - . ID=gene-AD39_RS05360;Name=glgA;gbkey=Gene;gene=glgA;gene_biotype=protein_coding;locus_tag=AD39_RS05360;old_locus_tag=AD39_3973 NZ_JJLH01000048.1 Protein Homology CDS 94969 96402 . - 0 ID=cds-WP_001197646.1;Parent=gene-AD39_RS05360;Dbxref=GenBank:WP_001197646.1;Name=WP_001197646.1;Ontology_term=GO:0004373;gbkey=CDS;gene=glgA;go_function=alpha-1%2C4-glucan glucosyltransferase (UDP-glucose donor) activity|0004373||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312301.1;locus_tag=AD39_RS05360;product=glycogen synthase GlgA;protein_id=WP_001197646.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 96402 97697 . - . ID=gene-AD39_RS05355;Name=glgC;gbkey=Gene;gene=glgC;gene_biotype=protein_coding;locus_tag=AD39_RS05355;old_locus_tag=AD39_3974 NZ_JJLH01000048.1 Protein Homology CDS 96402 97697 . - 0 ID=cds-WP_000253975.1;Parent=gene-AD39_RS05355;Dbxref=GenBank:WP_000253975.1;Name=WP_000253975.1;Ontology_term=GO:0005978,GO:0008878;gbkey=CDS;gene=glgC;go_function=glucose-1-phosphate adenylyltransferase activity|0008878||IEA;go_process=glycogen biosynthetic process|0005978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312302.1;locus_tag=AD39_RS05355;product=glucose-1-phosphate adenylyltransferase;protein_id=WP_000253975.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 97715 99688 . - . ID=gene-AD39_RS05350;Name=glgX;gbkey=Gene;gene=glgX;gene_biotype=protein_coding;locus_tag=AD39_RS05350;old_locus_tag=AD39_3975 NZ_JJLH01000048.1 Protein Homology CDS 97715 99688 . - 0 ID=cds-WP_000192546.1;Parent=gene-AD39_RS05350;Dbxref=GenBank:WP_000192546.1;Name=WP_000192546.1;Ontology_term=GO:0005980,GO:0120549;gbkey=CDS;gene=glgX;go_function=limit dextrin alpha-1%2C6-maltotetraose-hydrolase activity|0120549||IEA;go_process=glycogen catabolic process|0005980||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417889.1;locus_tag=AD39_RS05350;product=glycogen debranching protein GlgX;protein_id=WP_000192546.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 99685 101871 . - . ID=gene-AD39_RS05345;Name=glgB;gbkey=Gene;gene=glgB;gene_biotype=protein_coding;locus_tag=AD39_RS05345;old_locus_tag=AD39_3976 NZ_JJLH01000048.1 Protein Homology CDS 99685 101871 . - 0 ID=cds-WP_001283723.1;Parent=gene-AD39_RS05345;Dbxref=GenBank:WP_001283723.1;Name=WP_001283723.1;Ontology_term=GO:0005978,GO:0003844;gbkey=CDS;gene=glgB;go_function=1%2C4-alpha-glucan branching enzyme activity|0003844||IEA;go_process=glycogen biosynthetic process|0005978||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417890.1;locus_tag=AD39_RS05345;product=1%2C4-alpha-glucan branching enzyme;protein_id=WP_001283723.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 102144 103247 . - . ID=gene-AD39_RS05340;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=AD39_RS05340;old_locus_tag=AD39_3977 NZ_JJLH01000048.1 Protein Homology CDS 102144 103247 . - 0 ID=cds-WP_000799956.1;Parent=gene-AD39_RS05340;Dbxref=GenBank:WP_000799956.1;Name=WP_000799956.1;Ontology_term=GO:0009086,GO:0009088,GO:0009089,GO:0009097,GO:0004073,GO:0050661;gbkey=CDS;gene=asd;go_function=aspartate-semialdehyde dehydrogenase activity|0004073||IEA,NADP binding|0050661||IEA;go_process=methionine biosynthetic process|0009086||IEA,threonine biosynthetic process|0009088||IEA,lysine biosynthetic process via diaminopimelate|0009089||IEA,isoleucine biosynthetic process|0009097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312305.1;locus_tag=AD39_RS05340;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_000799956.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 103440 104033 . + . ID=gene-AD39_RS05335;Name=yhgN;gbkey=Gene;gene=yhgN;gene_biotype=protein_coding;locus_tag=AD39_RS05335;old_locus_tag=AD39_3978 NZ_JJLH01000048.1 Protein Homology CDS 103440 104033 . + 0 ID=cds-WP_001002544.1;Parent=gene-AD39_RS05335;Dbxref=GenBank:WP_001002544.1;Name=WP_001002544.1;gbkey=CDS;gene=yhgN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312306.1;locus_tag=AD39_RS05335;product=NAAT family transporter YhgN;protein_id=WP_001002544.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 104090 105430 . - . ID=gene-AD39_RS05330;Name=gntU;gbkey=Gene;gene=gntU;gene_biotype=protein_coding;locus_tag=AD39_RS05330;old_locus_tag=AD39_3979 NZ_JJLH01000048.1 Protein Homology CDS 104090 105430 . - 0 ID=cds-WP_000210111.1;Parent=gene-AD39_RS05330;Dbxref=GenBank:WP_000210111.1;Name=WP_000210111.1;Ontology_term=GO:0035429,GO:0015128,GO:0016020;gbkey=CDS;gene=gntU;go_component=membrane|0016020||IEA;go_function=gluconate transmembrane transporter activity|0015128||IEA;go_process=gluconate transmembrane transport|0035429||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312312.1;locus_tag=AD39_RS05330;product=gluconate transporter;protein_id=WP_000210111.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 105434 105961 . - . ID=gene-AD39_RS05325;Name=gntK;gbkey=Gene;gene=gntK;gene_biotype=protein_coding;locus_tag=AD39_RS05325;old_locus_tag=AD39_3980 NZ_JJLH01000048.1 Protein Homology CDS 105434 105961 . - 0 ID=cds-WP_000108330.1;Parent=gene-AD39_RS05325;Dbxref=GenBank:WP_000108330.1;Name=WP_000108330.1;gbkey=CDS;gene=gntK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417894.2;locus_tag=AD39_RS05325;product=gluconokinase;protein_id=WP_000108330.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 106100 107095 . - . ID=gene-AD39_RS05320;Name=gntR;gbkey=Gene;gene=gntR;gene_biotype=protein_coding;locus_tag=AD39_RS05320;old_locus_tag=AD39_3981 NZ_JJLH01000048.1 Protein Homology CDS 106100 107095 . - 0 ID=cds-WP_000730258.1;Parent=gene-AD39_RS05320;Dbxref=GenBank:WP_000730258.1;Name=WP_000730258.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=gntR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001693277.1;locus_tag=AD39_RS05320;product=gluconate operon transcriptional repressor GntR;protein_id=WP_000730258.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 107319 108014 . - . ID=gene-AD39_RS05315;Name=yhhW;gbkey=Gene;gene=yhhW;gene_biotype=protein_coding;locus_tag=AD39_RS05315;old_locus_tag=AD39_3983 NZ_JJLH01000048.1 Protein Homology CDS 107319 108014 . - 0 ID=cds-WP_000639802.1;Parent=gene-AD39_RS05315;Dbxref=GenBank:WP_000639802.1;Name=WP_000639802.1;gbkey=CDS;gene=yhhW;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004213399.1;locus_tag=AD39_RS05315;product=quercetin 2%2C3-dioxygenase;protein_id=WP_000639802.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 108137 109174 . - . ID=gene-AD39_RS05310;Name=yhhX;gbkey=Gene;gene=yhhX;gene_biotype=protein_coding;locus_tag=AD39_RS05310;old_locus_tag=AD39_3984 NZ_JJLH01000048.1 Protein Homology CDS 108137 109174 . - 0 ID=cds-WP_000236302.1;Parent=gene-AD39_RS05310;Dbxref=GenBank:WP_000236302.1;Name=WP_000236302.1;Ontology_term=GO:0000166;gbkey=CDS;gene=yhhX;go_function=nucleotide binding|0000166||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709215.2;locus_tag=AD39_RS05310;product=oxidoreductase;protein_id=WP_000236302.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 109507 109995 . + . ID=gene-AD39_RS0125385;Name=yhhY;gbkey=Gene;gene=yhhY;gene_biotype=protein_coding;locus_tag=AD39_RS0125385 NZ_JJLH01000048.1 Protein Homology CDS 109507 109995 . + 0 ID=cds-WP_001295206.1;Parent=gene-AD39_RS0125385;Dbxref=GenBank:WP_001295206.1;Name=WP_001295206.1;Ontology_term=GO:0008080;gbkey=CDS;gene=yhhY;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417898.1;locus_tag=AD39_RS0125385;product=N-acetyltransferase;protein_id=WP_001295206.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 110232 111410 . + . ID=gene-AD39_RS05305;Name=tssD;gbkey=Gene;gene=tssD;gene_biotype=protein_coding;locus_tag=AD39_RS05305;old_locus_tag=AD39_3986 NZ_JJLH01000048.1 Protein Homology CDS 110232 111410 . + 0 ID=cds-WP_000065902.1;Parent=gene-AD39_RS05305;Dbxref=GenBank:WP_000065902.1;Name=WP_000065902.1;gbkey=CDS;gene=tssD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417899.1;locus_tag=AD39_RS05305;product=Hcp1 family type VI secretion system effector;protein_id=WP_000065902.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 111407 111901 . + . ID=gene-AD39_RS05300;Name=yrhA;gbkey=Gene;gene=yrhA;gene_biotype=protein_coding;locus_tag=AD39_RS05300;old_locus_tag=AD39_3987 NZ_JJLH01000048.1 Protein Homology CDS 111407 111901 . + 0 ID=cds-WP_000988496.1;Parent=gene-AD39_RS05300;Dbxref=GenBank:WP_000988496.1;Name=WP_000988496.1;gbkey=CDS;gene=yrhA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000988499.1;locus_tag=AD39_RS05300;product=protein YrhA;protein_id=WP_000988496.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 111996 112151 . + . ID=gene-AD39_RS29240;Name=yrhD;gbkey=Gene;gene=yrhD;gene_biotype=protein_coding;locus_tag=AD39_RS29240 NZ_JJLH01000048.1 Protein Homology CDS 111996 112151 . + 0 ID=cds-WP_001307436.1;Parent=gene-AD39_RS29240;Dbxref=GenBank:WP_001307436.1;Name=WP_001307436.1;gbkey=CDS;gene=yrhD;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518820.1;locus_tag=AD39_RS29240;product=protein YrhD;protein_id=WP_001307436.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 112351 112635 . + . ID=gene-AD39_RS05295;Name=yrhB;gbkey=Gene;gene=yrhB;gene_biotype=protein_coding;locus_tag=AD39_RS05295;old_locus_tag=AD39_3988 NZ_JJLH01000048.1 Protein Homology CDS 112351 112635 . + 0 ID=cds-WP_000634159.1;Parent=gene-AD39_RS05295;Dbxref=GenBank:WP_000634159.1;Name=WP_000634159.1;gbkey=CDS;gene=yrhB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417903.1;locus_tag=AD39_RS05295;product=YrhB family protein;protein_id=WP_000634159.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 112673 114415 . - . ID=gene-AD39_RS05290;Name=ggt;gbkey=Gene;gene=ggt;gene_biotype=protein_coding;locus_tag=AD39_RS05290;old_locus_tag=AD39_3989 NZ_JJLH01000048.1 Protein Homology CDS 112673 114415 . - 0 ID=cds-WP_001508014.1;Parent=gene-AD39_RS05290;Dbxref=GenBank:WP_001508014.1;Name=WP_001508014.1;Ontology_term=GO:0006751,GO:0036374;gbkey=CDS;gene=ggt;go_function=glutathione hydrolase activity|0036374||IEA;go_process=glutathione catabolic process|0006751||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001486198.1;locus_tag=AD39_RS05290;product=gamma-glutamyltransferase;protein_id=WP_001508014.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 114535 114975 . + . ID=gene-AD39_RS05285;Name=yhhA;gbkey=Gene;gene=yhhA;gene_biotype=protein_coding;locus_tag=AD39_RS05285;old_locus_tag=AD39_3990 NZ_JJLH01000048.1 Protein Homology CDS 114535 114975 . + 0 ID=cds-WP_000825996.1;Parent=gene-AD39_RS05285;Dbxref=GenBank:WP_000825996.1;Name=WP_000825996.1;gbkey=CDS;gene=yhhA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417905.1;locus_tag=AD39_RS05285;product=DUF2756 family protein;protein_id=WP_000825996.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 114962 115705 . - . ID=gene-AD39_RS05280;Name=ugpQ;gbkey=Gene;gene=ugpQ;gene_biotype=protein_coding;locus_tag=AD39_RS05280;old_locus_tag=AD39_3991 NZ_JJLH01000048.1 Protein Homology CDS 114962 115705 . - 0 ID=cds-WP_000073590.1;Parent=gene-AD39_RS05280;Dbxref=GenBank:WP_000073590.1;Name=WP_000073590.1;Ontology_term=GO:0006629,GO:0008081;gbkey=CDS;gene=ugpQ;go_function=phosphoric diester hydrolase activity|0008081||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709219.1;locus_tag=AD39_RS05280;product=glycerophosphodiester phosphodiesterase;protein_id=WP_000073590.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 115702 116772 . - . ID=gene-AD39_RS05275;Name=ugpC;gbkey=Gene;gene=ugpC;gene_biotype=protein_coding;locus_tag=AD39_RS05275;old_locus_tag=AD39_3992 NZ_JJLH01000048.1 Protein Homology CDS 115702 116772 . - 0 ID=cds-WP_032287627.1;Parent=gene-AD39_RS05275;Dbxref=GenBank:WP_032287627.1;Name=WP_032287627.1;gbkey=CDS;gene=ugpC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417907.2;locus_tag=AD39_RS05275;product=sn-glycerol 3-phosphate ABC transporter ATP binding protein UgpC;protein_id=WP_032287627.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 116774 117619 . - . ID=gene-AD39_RS05270;Name=ugpE;gbkey=Gene;gene=ugpE;gene_biotype=protein_coding;locus_tag=AD39_RS05270;old_locus_tag=AD39_3993 NZ_JJLH01000048.1 Protein Homology CDS 116774 117619 . - 0 ID=cds-WP_000572164.1;Parent=gene-AD39_RS05270;Dbxref=GenBank:WP_000572164.1;Name=WP_000572164.1;Ontology_term=GO:0015794,GO:0005886,GO:0055052;gbkey=CDS;gene=ugpE;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_process=glycerol-3-phosphate transmembrane transport|0015794||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000572177.1;locus_tag=AD39_RS05270;product=sn-glycerol-3-phosphate ABC transporter permease UgpE;protein_id=WP_000572164.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 117616 118503 . - . ID=gene-AD39_RS05265;Name=ugpA;gbkey=Gene;gene=ugpA;gene_biotype=protein_coding;locus_tag=AD39_RS05265;old_locus_tag=AD39_3994 NZ_JJLH01000048.1 Protein Homology CDS 117616 118503 . - 0 ID=cds-WP_000099276.1;Parent=gene-AD39_RS05265;Dbxref=GenBank:WP_000099276.1;Name=WP_000099276.1;gbkey=CDS;gene=ugpA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000099274.1;locus_tag=AD39_RS05265;product=sn-glycerol-3-phosphate ABC transporter permease UgpA;protein_id=WP_000099276.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 118601 119917 . - . ID=gene-AD39_RS05260;Name=ugpB;gbkey=Gene;gene=ugpB;gene_biotype=protein_coding;locus_tag=AD39_RS05260;old_locus_tag=AD39_3995 NZ_JJLH01000048.1 Protein Homology CDS 118601 119917 . - 0 ID=cds-WP_032287628.1;Parent=gene-AD39_RS05260;Dbxref=GenBank:WP_032287628.1;Name=WP_032287628.1;Ontology_term=GO:0055085;gbkey=CDS;gene=ugpB;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312326.1;locus_tag=AD39_RS05260;product=sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB;protein_id=WP_032287628.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 120313 121026 . - . ID=gene-AD39_RS05250;Name=livF;gbkey=Gene;gene=livF;gene_biotype=protein_coding;locus_tag=AD39_RS05250;old_locus_tag=AD39_3997 NZ_JJLH01000048.1 Protein Homology CDS 120313 121026 . - 0 ID=cds-WP_000416895.1;Parent=gene-AD39_RS05250;Dbxref=GenBank:WP_000416895.1;Name=WP_000416895.1;gbkey=CDS;gene=livF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312328.2;locus_tag=AD39_RS05250;product=high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;protein_id=WP_000416895.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 121028 121795 . - . ID=gene-AD39_RS05245;Name=livG;gbkey=Gene;gene=livG;gene_biotype=protein_coding;locus_tag=AD39_RS05245;old_locus_tag=AD39_3998 NZ_JJLH01000048.1 Protein Homology CDS 121028 121795 . - 0 ID=cds-WP_000082110.1;Parent=gene-AD39_RS05245;Dbxref=GenBank:WP_000082110.1;Name=WP_000082110.1;gbkey=CDS;gene=livG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000084170.1;locus_tag=AD39_RS05245;product=high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG;protein_id=WP_000082110.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 121792 123069 . - . ID=gene-AD39_RS05240;Name=livM;gbkey=Gene;gene=livM;gene_biotype=protein_coding;locus_tag=AD39_RS05240;old_locus_tag=AD39_3999 NZ_JJLH01000048.1 Protein Homology CDS 121792 123069 . - 0 ID=cds-WP_000803782.1;Parent=gene-AD39_RS05240;Dbxref=GenBank:WP_000803782.1;Name=WP_000803782.1;gbkey=CDS;gene=livM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312330.1;locus_tag=AD39_RS05240;product=branched chain amino acid ABC transporter permease LivM;protein_id=WP_000803782.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 123066 123992 . - . ID=gene-AD39_RS05235;Name=livH;gbkey=Gene;gene=livH;gene_biotype=protein_coding;locus_tag=AD39_RS05235;old_locus_tag=AD39_4000 NZ_JJLH01000048.1 Protein Homology CDS 123066 123992 . - 0 ID=cds-WP_001295111.1;Parent=gene-AD39_RS05235;Dbxref=GenBank:WP_001295111.1;Name=WP_001295111.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=livH;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010436488.1;locus_tag=AD39_RS05235;product=high-affinity branched-chain amino acid ABC transporter permease LivH;protein_id=WP_001295111.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 124040 125149 . - . ID=gene-AD39_RS05230;Name=livK;gbkey=Gene;gene=livK;gene_biotype=protein_coding;locus_tag=AD39_RS05230;old_locus_tag=AD39_4001 NZ_JJLH01000048.1 Protein Homology CDS 124040 125149 . - 0 ID=cds-WP_001388570.1;Parent=gene-AD39_RS05230;Dbxref=GenBank:WP_001388570.1;Name=WP_001388570.1;gbkey=CDS;gene=livK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417915.1;locus_tag=AD39_RS05230;product=high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK;protein_id=WP_001388570.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 125573 125956 . + . ID=gene-AD39_RS05225;Name=panM;gbkey=Gene;gene=panM;gene_biotype=protein_coding;locus_tag=AD39_RS05225;old_locus_tag=AD39_4003 NZ_JJLH01000048.1 Protein Homology CDS 125573 125956 . + 0 ID=cds-WP_000778795.1;Parent=gene-AD39_RS05225;Dbxref=GenBank:WP_000778795.1;Name=WP_000778795.1;Ontology_term=GO:0015940,GO:0031638,GO:0008080;gbkey=CDS;gene=panM;go_function=N-acetyltransferase activity|0008080||IEA;go_process=pantothenate biosynthetic process|0015940||IEA,zymogen activation|0031638||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709229.1;locus_tag=AD39_RS05225;product=aspartate 1-decarboxylase autocleavage activator PanM;protein_id=WP_000778795.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 125953 126480 . - . ID=gene-AD39_RS05220;Name=ataT;gbkey=Gene;gene=ataT;gene_biotype=protein_coding;locus_tag=AD39_RS05220;old_locus_tag=AD39_4004 NZ_JJLH01000048.1 Protein Homology CDS 125953 126480 . - 0 ID=cds-WP_000342449.1;Parent=gene-AD39_RS05220;Dbxref=GenBank:WP_000342449.1;Name=WP_000342449.1;gbkey=CDS;gene=ataT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312334.1;locus_tag=AD39_RS05220;product=type II toxin-antitoxin system toxin acetyltransferase AtaT;protein_id=WP_000342449.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 126487 126753 . - . ID=gene-AD39_RS05215;Name=ataR;gbkey=Gene;gene=ataR;gene_biotype=protein_coding;locus_tag=AD39_RS05215;old_locus_tag=AD39_4005 NZ_JJLH01000048.1 Protein Homology CDS 126487 126753 . - 0 ID=cds-WP_001478481.1;Parent=gene-AD39_RS05215;Dbxref=GenBank:WP_001478481.1;Name=WP_001478481.1;gbkey=CDS;gene=ataR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312335.1;locus_tag=AD39_RS05215;product=type II toxin-antitoxin system antitoxin AtaR;protein_id=WP_001478481.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 126903 128006 . - . ID=gene-AD39_RS05210;Name=livJ;gbkey=Gene;gene=livJ;gene_biotype=protein_coding;locus_tag=AD39_RS05210;old_locus_tag=AD39_4006 NZ_JJLH01000048.1 Protein Homology CDS 126903 128006 . - 0 ID=cds-WP_001021996.1;Parent=gene-AD39_RS05210;Dbxref=GenBank:WP_001021996.1;Name=WP_001021996.1;gbkey=CDS;gene=livJ;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026223.1;locus_tag=AD39_RS05210;product=branched chain amino acid ABC transporter substrate-binding protein LivJ;protein_id=WP_001021996.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 128277 129131 . - . ID=gene-AD39_RS05205;Name=rpoH;gbkey=Gene;gene=rpoH;gene_biotype=protein_coding;locus_tag=AD39_RS05205;old_locus_tag=AD39_4007 NZ_JJLH01000048.1 Protein Homology CDS 128277 129131 . - 0 ID=cds-WP_000130217.1;Parent=gene-AD39_RS05205;Dbxref=GenBank:WP_000130217.1;Name=WP_000130217.1;Ontology_term=GO:0006352,GO:0006355,GO:0003700,GO:0016987;gbkey=CDS;gene=rpoH;go_function=DNA-binding transcription factor activity|0003700||IEA,sigma factor activity|0016987||IEA;go_process=DNA-templated transcription initiation|0006352||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312337.1;locus_tag=AD39_RS05205;product=RNA polymerase sigma factor RpoH;protein_id=WP_000130217.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 129376 130434 . - . ID=gene-AD39_RS05200;Name=ftsX;gbkey=Gene;gene=ftsX;gene_biotype=protein_coding;locus_tag=AD39_RS05200;old_locus_tag=AD39_4008 NZ_JJLH01000048.1 Protein Homology CDS 129376 130434 . - 0 ID=cds-WP_001042003.1;Parent=gene-AD39_RS05200;Dbxref=GenBank:WP_001042003.1;Name=WP_001042003.1;Ontology_term=GO:0000910;gbkey=CDS;gene=ftsX;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417919.1;locus_tag=AD39_RS05200;product=permease-like cell division protein FtsX;protein_id=WP_001042003.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 130427 131095 . - . ID=gene-AD39_RS05195;Name=ftsE;gbkey=Gene;gene=ftsE;gene_biotype=protein_coding;locus_tag=AD39_RS05195;old_locus_tag=AD39_4009 NZ_JJLH01000048.1 Protein Homology CDS 130427 131095 . - 0 ID=cds-WP_000617723.1;Parent=gene-AD39_RS05195;Dbxref=GenBank:WP_000617723.1;Name=WP_000617723.1;Ontology_term=GO:0000910,GO:0005524;gbkey=CDS;gene=ftsE;go_function=ATP binding|0005524||IEA;go_process=cytokinesis|0000910||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312339.1;locus_tag=AD39_RS05195;product=cell division ATP-binding protein FtsE;protein_id=WP_000617723.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 131098 132591 . - . ID=gene-AD39_RS05190;Name=ftsY;gbkey=Gene;gene=ftsY;gene_biotype=protein_coding;locus_tag=AD39_RS05190;old_locus_tag=AD39_4010 NZ_JJLH01000048.1 Protein Homology CDS 131098 132591 . - 0 ID=cds-WP_001040630.1;Parent=gene-AD39_RS05190;Dbxref=GenBank:WP_001040630.1;Name=WP_001040630.1;Ontology_term=GO:0006614,GO:0009306,GO:0003924,GO:0005047;gbkey=CDS;gene=ftsY;go_function=GTPase activity|0003924||IEA,signal recognition particle binding|0005047||IEA;go_process=SRP-dependent cotranslational protein targeting to membrane|0006614||IEA,protein secretion|0009306||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312340.1;locus_tag=AD39_RS05190;product=signal recognition particle-docking protein FtsY;protein_id=WP_001040630.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 132741 133337 . + . ID=gene-AD39_RS05185;Name=rsmD;gbkey=Gene;gene=rsmD;gene_biotype=protein_coding;locus_tag=AD39_RS05185;old_locus_tag=AD39_4011 NZ_JJLH01000048.1 Protein Homology CDS 132741 133337 . + 0 ID=cds-WP_000743193.1;Parent=gene-AD39_RS05185;Dbxref=GenBank:WP_000743193.1;Name=WP_000743193.1;Ontology_term=GO:0031167,GO:0003676,GO:0008168;gbkey=CDS;gene=rsmD;go_function=nucleic acid binding|0003676||IEA,methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417922.1;locus_tag=AD39_RS05185;product=16S rRNA (guanine(966)-N(2))-methyltransferase;protein_id=WP_000743193.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 133327 133596 . + . ID=gene-AD39_RS05180;Name=yhhL;gbkey=Gene;gene=yhhL;gene_biotype=protein_coding;locus_tag=AD39_RS05180;old_locus_tag=AD39_4012 NZ_JJLH01000048.1 Protein Homology CDS 133327 133596 . + 0 ID=cds-WP_001295207.1;Parent=gene-AD39_RS05180;Dbxref=GenBank:WP_001295207.1;Name=WP_001295207.1;gbkey=CDS;gene=yhhL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312342.1;locus_tag=AD39_RS05180;product=DUF1145 family protein;protein_id=WP_001295207.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 133599 133958 . - . ID=gene-AD39_RS05175;Name=yhhM;gbkey=Gene;gene=yhhM;gene_biotype=protein_coding;locus_tag=AD39_RS05175;old_locus_tag=AD39_4013 NZ_JJLH01000048.1 Protein Homology CDS 133599 133958 . - 0 ID=cds-WP_000042900.1;Parent=gene-AD39_RS05175;Dbxref=GenBank:WP_000042900.1;Name=WP_000042900.1;gbkey=CDS;gene=yhhM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709237.1;locus_tag=AD39_RS05175;product=DUF2500 domain-containing protein;protein_id=WP_000042900.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 134099 134725 . + . ID=gene-AD39_RS05170;Name=yhhN;gbkey=Gene;gene=yhhN;gene_biotype=protein_coding;locus_tag=AD39_RS05170;old_locus_tag=AD39_4014 NZ_JJLH01000048.1 Protein Homology CDS 134099 134725 . + 0 ID=cds-WP_000964718.1;Parent=gene-AD39_RS05170;Dbxref=GenBank:WP_000964718.1;Name=WP_000964718.1;gbkey=CDS;gene=yhhN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312344.1;locus_tag=AD39_RS05170;product=lysoplasmalogenase;protein_id=WP_000964718.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 134799 136997 . + . ID=gene-AD39_RS05165;Name=zntA;gbkey=Gene;gene=zntA;gene_biotype=protein_coding;locus_tag=AD39_RS05165;old_locus_tag=AD39_4015 NZ_JJLH01000048.1 Protein Homology CDS 134799 136997 . + 0 ID=cds-WP_032287630.1;Parent=gene-AD39_RS05165;Dbxref=GenBank:WP_032287630.1;Name=WP_032287630.1;Ontology_term=GO:0006812,GO:0005215,GO:0005524,GO:0016887,GO:0019829,GO:0046872,GO:0016020;gbkey=CDS;gene=zntA;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled monoatomic cation transmembrane transporter activity|0019829||IEA,metal ion binding|0046872||IEA;go_process=monoatomic cation transport|0006812||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312345.1;locus_tag=AD39_RS05165;product=Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA;protein_id=WP_032287630.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 137104 137349 . - . ID=gene-AD39_RS05160;Name=tusA;gbkey=Gene;gene=tusA;gene_biotype=protein_coding;locus_tag=AD39_RS05160;old_locus_tag=AD39_4016 NZ_JJLH01000048.1 Protein Homology CDS 137104 137349 . - 0 ID=cds-WP_000130621.1;Parent=gene-AD39_RS05160;Dbxref=GenBank:WP_000130621.1;Name=WP_000130621.1;Ontology_term=GO:0002143,GO:0097163;gbkey=CDS;gene=tusA;go_function=sulfur carrier activity|0097163||IEA;go_process=tRNA wobble position uridine thiolation|0002143||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312346.1;locus_tag=AD39_RS05160;product=sulfurtransferase TusA;protein_id=WP_000130621.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 137570 138235 . + . ID=gene-AD39_RS05155;Name=yhhQ;gbkey=Gene;gene=yhhQ;gene_biotype=protein_coding;locus_tag=AD39_RS05155;old_locus_tag=AD39_4017 NZ_JJLH01000048.1 Protein Homology CDS 137570 138235 . + 0 ID=cds-WP_001100467.1;Parent=gene-AD39_RS05155;Dbxref=GenBank:WP_001100467.1;Name=WP_001100467.1;Ontology_term=GO:1990397;gbkey=CDS;gene=yhhQ;go_process=queuosine salvage|1990397||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312347.1;locus_tag=AD39_RS05155;product=7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter;protein_id=WP_001100467.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 138308 138865 . + . ID=gene-AD39_RS05150;Name=dcrB;gbkey=Gene;gene=dcrB;gene_biotype=protein_coding;locus_tag=AD39_RS05150;old_locus_tag=AD39_4018 NZ_JJLH01000048.1 Protein Homology CDS 138308 138865 . + 0 ID=cds-WP_001245295.1;Parent=gene-AD39_RS05150;Dbxref=GenBank:WP_001245295.1;Name=WP_001245295.1;gbkey=CDS;gene=dcrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417929.4;locus_tag=AD39_RS05150;product=phage sensitivity protein DcrB;protein_id=WP_001245295.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 138869 140086 . - . ID=gene-AD39_RS05145;Name=yhhS;gbkey=Gene;gene=yhhS;gene_biotype=protein_coding;locus_tag=AD39_RS05145;old_locus_tag=AD39_4019 NZ_JJLH01000048.1 Protein Homology CDS 138869 140086 . - 0 ID=cds-WP_032214553.1;Parent=gene-AD39_RS05145;Dbxref=GenBank:WP_032214553.1;Name=WP_032214553.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=yhhS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417930.2;locus_tag=AD39_RS05145;product=MFS transporter;protein_id=WP_032214553.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 140218 141267 . + . ID=gene-AD39_RS05140;Name=yhhT;gbkey=Gene;gene=yhhT;gene_biotype=protein_coding;locus_tag=AD39_RS05140;old_locus_tag=AD39_4020 NZ_JJLH01000048.1 Protein Homology CDS 140218 141267 . + 0 ID=cds-WP_001297848.1;Parent=gene-AD39_RS05140;Dbxref=GenBank:WP_001297848.1;Name=WP_001297848.1;gbkey=CDS;gene=yhhT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312350.2;locus_tag=AD39_RS05140;product=AI-2E family transporter;protein_id=WP_001297848.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 141322 141909 . + . ID=gene-AD39_RS05135;Name=acpT;gbkey=Gene;gene=acpT;gene_biotype=protein_coding;locus_tag=AD39_RS05135;old_locus_tag=AD39_4021 NZ_JJLH01000048.1 Protein Homology CDS 141322 141909 . + 0 ID=cds-WP_000285784.1;Parent=gene-AD39_RS05135;Dbxref=GenBank:WP_000285784.1;Name=WP_000285784.1;gbkey=CDS;gene=acpT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312369.1;locus_tag=AD39_RS05135;product=4'-phosphopantetheinyl transferase AcpT;protein_id=WP_000285784.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 142020 143594 . + . ID=gene-AD39_RS05130;Name=nikA;gbkey=Gene;gene=nikA;gene_biotype=protein_coding;locus_tag=AD39_RS05130;old_locus_tag=AD39_4022 NZ_JJLH01000048.1 Protein Homology CDS 142020 143594 . + 0 ID=cds-WP_000953353.1;Parent=gene-AD39_RS05130;Dbxref=GenBank:WP_000953353.1;Name=WP_000953353.1;Ontology_term=GO:0015675,GO:0015413,GO:0016151,GO:0009897,GO:0030288,GO:0055052;gbkey=CDS;gene=nikA;go_component=external side of plasma membrane|0009897||IEA,outer membrane-bounded periplasmic space|0030288||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ABC-type nickel transporter activity|0015413||IEA,nickel cation binding|0016151||IEA;go_process=nickel cation transport|0015675||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417933.1;locus_tag=AD39_RS05130;product=nickel ABC transporter substrate-binding protein;protein_id=WP_000953353.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 143594 144538 . + . ID=gene-AD39_RS05125;Name=nikB;gbkey=Gene;gene=nikB;gene_biotype=protein_coding;locus_tag=AD39_RS05125;old_locus_tag=AD39_4023 NZ_JJLH01000048.1 Protein Homology CDS 143594 144538 . + 0 ID=cds-WP_000947068.1;Parent=gene-AD39_RS05125;Dbxref=GenBank:WP_000947068.1;Name=WP_000947068.1;gbkey=CDS;gene=nikB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417934.1;locus_tag=AD39_RS05125;product=nickel ABC transporter permease subunit NikB;protein_id=WP_000947068.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 144535 145368 . + . ID=gene-AD39_RS05120;Name=nikC;gbkey=Gene;gene=nikC;gene_biotype=protein_coding;locus_tag=AD39_RS05120;old_locus_tag=AD39_4024 NZ_JJLH01000048.1 Protein Homology CDS 144535 145368 . + 0 ID=cds-WP_001008963.1;Parent=gene-AD39_RS05120;Dbxref=GenBank:WP_001008963.1;Name=WP_001008963.1;Ontology_term=GO:0055085,GO:0015099,GO:0016020;gbkey=CDS;gene=nikC;go_component=membrane|0016020||IEA;go_function=nickel cation transmembrane transporter activity|0015099||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312372.1;locus_tag=AD39_RS05120;product=nickel ABC transporter permease subunit NikC;protein_id=WP_001008963.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 145368 146132 . + . ID=gene-AD39_RS05115;Name=nikD;gbkey=Gene;gene=nikD;gene_biotype=protein_coding;locus_tag=AD39_RS05115;old_locus_tag=AD39_4025 NZ_JJLH01000048.1 Protein Homology CDS 145368 146132 . + 0 ID=cds-WP_032287632.1;Parent=gene-AD39_RS05115;Dbxref=GenBank:WP_032287632.1;Name=WP_032287632.1;Ontology_term=GO:0015675,GO:0015413,GO:0016151,GO:0005886,GO:0043190;gbkey=CDS;gene=nikD;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ABC-type nickel transporter activity|0015413||IEA,nickel cation binding|0016151||IEA;go_process=nickel cation transport|0015675||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417936.1;locus_tag=AD39_RS05115;product=nickel import ATP-binding protein NikD;protein_id=WP_032287632.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 146129 146935 . + . ID=gene-AD39_RS05110;Name=nikE;gbkey=Gene;gene=nikE;gene_biotype=protein_coding;locus_tag=AD39_RS05110;old_locus_tag=AD39_4026 NZ_JJLH01000048.1 Protein Homology CDS 146129 146935 . + 0 ID=cds-WP_000173666.1;Parent=gene-AD39_RS05110;Dbxref=GenBank:WP_000173666.1;Name=WP_000173666.1;Ontology_term=GO:0015675,GO:0005524,GO:0015413,GO:0005886,GO:0043190;gbkey=CDS;gene=nikE;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type nickel transporter activity|0015413||IEA;go_process=nickel cation transport|0015675||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417937.1;locus_tag=AD39_RS05110;product=nickel import ATP-binding protein NikE;protein_id=WP_000173666.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 146941 147342 . + . ID=gene-AD39_RS05105;Name=nikR;gbkey=Gene;gene=nikR;gene_biotype=protein_coding;locus_tag=AD39_RS05105;old_locus_tag=AD39_4027 NZ_JJLH01000048.1 Protein Homology CDS 146941 147342 . + 0 ID=cds-WP_001190062.1;Parent=gene-AD39_RS05105;Dbxref=GenBank:WP_001190062.1;Name=WP_001190062.1;Ontology_term=GO:0006355,GO:0010045,GO:0003677,GO:0016151;gbkey=CDS;gene=nikR;go_function=DNA binding|0003677||IEA,nickel cation binding|0016151||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,response to nickel cation|0010045||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312375.1;locus_tag=AD39_RS05105;product=nickel-responsive transcriptional regulator NikR;protein_id=WP_001190062.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 147462 147821 . - . ID=gene-AD39_RS05100;Name=AD39_RS05100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS05100;old_locus_tag=AD39_4028 NZ_JJLH01000048.1 Protein Homology CDS 147462 147821 . - 0 ID=cds-WP_000593555.1;Parent=gene-AD39_RS05100;Dbxref=GenBank:WP_000593555.1;Name=WP_000593555.1;Ontology_term=GO:0110001;gbkey=CDS;go_component=toxin-antitoxin complex|0110001||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312383.1;locus_tag=AD39_RS05100;product=type II toxin-antitoxin system HicB family antitoxin;protein_id=WP_000593555.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 147818 148048 . - . ID=gene-AD39_RS0125390;Name=AD39_RS0125390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125390 NZ_JJLH01000048.1 Protein Homology CDS 147818 148048 . - 0 ID=cds-WP_042014162.1;Parent=gene-AD39_RS0125390;Dbxref=GenBank:WP_042014162.1;Name=WP_042014162.1;Ontology_term=GO:0003729;gbkey=CDS;go_function=mRNA binding|0003729||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012989200.1;locus_tag=AD39_RS0125390;product=type II toxin-antitoxin system HicA family toxin;protein_id=WP_042014162.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 148152 149276 . - . ID=gene-AD39_RS05095;Name=yhhJ;gbkey=Gene;gene=yhhJ;gene_biotype=protein_coding;locus_tag=AD39_RS05095;old_locus_tag=AD39_4029 NZ_JJLH01000048.1 Protein Homology CDS 148152 149276 . - 0 ID=cds-WP_001216257.1;Parent=gene-AD39_RS05095;Dbxref=GenBank:WP_001216257.1;Name=WP_001216257.1;Ontology_term=GO:0140359,GO:0016020;gbkey=CDS;gene=yhhJ;go_component=membrane|0016020||IEA;go_function=ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709253.2;locus_tag=AD39_RS05095;product=ABC transporter permease;protein_id=WP_001216257.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 149276 152011 . - . ID=gene-AD39_RS05090;Name=rbbA;gbkey=Gene;gene=rbbA;gene_biotype=protein_coding;locus_tag=AD39_RS05090;old_locus_tag=AD39_4030 NZ_JJLH01000048.1 Protein Homology CDS 149276 152011 . - 0 ID=cds-WP_032218474.1;Parent=gene-AD39_RS05090;Dbxref=GenBank:WP_032218474.1;Name=WP_032218474.1;gbkey=CDS;gene=rbbA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709254.1;locus_tag=AD39_RS05090;product=ribosome-associated ATPase/putative transporter RbbA;protein_id=WP_032218474.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 152008 153075 . - . ID=gene-AD39_RS05085;Name=yhiI;gbkey=Gene;gene=yhiI;gene_biotype=protein_coding;locus_tag=AD39_RS05085;old_locus_tag=AD39_4031 NZ_JJLH01000048.1 Protein Homology CDS 152008 153075 . - 0 ID=cds-WP_001652214.1;Parent=gene-AD39_RS05085;Dbxref=GenBank:WP_001652214.1;Name=WP_001652214.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yhiI;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312387.1;locus_tag=AD39_RS05085;product=HlyD family secretion protein;protein_id=WP_001652214.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 153138 153251 . - . ID=gene-AD39_RS29825;Name=yhiY;gbkey=Gene;gene=yhiY;gene_biotype=protein_coding;locus_tag=AD39_RS29825 NZ_JJLH01000048.1 Protein Homology CDS 153138 153251 . - 0 ID=cds-WP_001296785.1;Parent=gene-AD39_RS29825;Dbxref=GenBank:WP_001296785.1;Name=WP_001296785.1;gbkey=CDS;gene=yhiY;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051203.1;locus_tag=AD39_RS29825;product=protein YhiY;protein_id=WP_001296785.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 153441 155063 . - . ID=gene-AD39_RS05080;Name=yhiJ;gbkey=Gene;gene=yhiJ;gene_biotype=protein_coding;locus_tag=AD39_RS05080;old_locus_tag=AD39_4033 NZ_JJLH01000048.1 Protein Homology CDS 153441 155063 . - 0 ID=cds-WP_001395828.1;Parent=gene-AD39_RS05080;Dbxref=GenBank:WP_001395828.1;Name=WP_001395828.1;gbkey=CDS;gene=yhiJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709256.1;locus_tag=AD39_RS05080;product=DUF4049 domain-containing protein;protein_id=WP_001395828.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 155325 156914 . - . ID=gene-AD39_RS05075;Name=AD39_RS05075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS05075;old_locus_tag=AD39_4034 NZ_JJLH01000048.1 Protein Homology CDS 155325 156914 . - 0 ID=cds-WP_024170832.1;Parent=gene-AD39_RS05075;Dbxref=GenBank:WP_024170832.1;Name=WP_024170832.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312389.1;locus_tag=AD39_RS05075;product=DUF4049 domain-containing protein;protein_id=WP_024170832.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 157298 158350 . + . ID=gene-AD39_RS05070;Name=yhiM;gbkey=Gene;gene=yhiM;gene_biotype=protein_coding;locus_tag=AD39_RS05070;old_locus_tag=AD39_4036 NZ_JJLH01000048.1 Protein Homology CDS 157298 158350 . + 0 ID=cds-WP_001028905.1;Parent=gene-AD39_RS05070;Dbxref=GenBank:WP_001028905.1;Name=WP_001028905.1;gbkey=CDS;gene=yhiM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417948.4;locus_tag=AD39_RS05070;product=DUF2776 domain-containing protein;protein_id=WP_001028905.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 158666 159868 . - . ID=gene-AD39_RS05065;Name=yhiN;gbkey=Gene;gene=yhiN;gene_biotype=protein_coding;locus_tag=AD39_RS05065;old_locus_tag=AD39_4037 NZ_JJLH01000048.1 Protein Homology CDS 158666 159868 . - 0 ID=cds-WP_000439167.1;Parent=gene-AD39_RS05065;Dbxref=GenBank:WP_000439167.1;Name=WP_000439167.1;Ontology_term=GO:0050660,GO:0050661;gbkey=CDS;gene=yhiN;go_function=flavin adenine dinucleotide binding|0050660||IEA,NADP binding|0050661||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417949.1;locus_tag=AD39_RS05065;product=NAD(P)/FAD-dependent oxidoreductase;protein_id=WP_000439167.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 160100 161599 . + . ID=gene-AD39_RS05060;Name=pitA;gbkey=Gene;gene=pitA;gene_biotype=protein_coding;locus_tag=AD39_RS05060;old_locus_tag=AD39_4038 NZ_JJLH01000048.1 Protein Homology CDS 160100 161599 . + 0 ID=cds-WP_000902780.1;Parent=gene-AD39_RS05060;Dbxref=GenBank:WP_000902780.1;Name=WP_000902780.1;Ontology_term=GO:0006817,GO:0016020;gbkey=CDS;gene=pitA;go_component=membrane|0016020||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312392.1;locus_tag=AD39_RS05060;product=inorganic phosphate transporter PitA;protein_id=WP_000902780.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 161670 162005 . - . ID=gene-AD39_RS0125405;Name=uspB;gbkey=Gene;gene=uspB;gene_biotype=protein_coding;locus_tag=AD39_RS0125405;old_locus_tag=AD39_4039 NZ_JJLH01000048.1 Protein Homology CDS 161670 162005 . - 0 ID=cds-WP_000626187.1;Parent=gene-AD39_RS0125405;Dbxref=GenBank:WP_000626187.1;Name=WP_000626187.1;gbkey=CDS;gene=uspB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312393.1;locus_tag=AD39_RS0125405;product=universal stress protein UspB;protein_id=WP_000626187.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 162396 162830 . + . ID=gene-AD39_RS05055;Name=uspA;gbkey=Gene;gene=uspA;gene_biotype=protein_coding;locus_tag=AD39_RS05055;old_locus_tag=AD39_4040 NZ_JJLH01000048.1 Protein Homology CDS 162396 162830 . + 0 ID=cds-WP_000323571.1;Parent=gene-AD39_RS05055;Dbxref=GenBank:WP_000323571.1;Name=WP_000323571.1;gbkey=CDS;gene=uspA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312394.1;locus_tag=AD39_RS05055;product=universal stress protein UspA;protein_id=WP_000323571.1;transl_table=11 NZ_JJLH01000048.1 RefSeq pseudogene 162907 162972 . - . ID=gene-AD39_RS29830;Name=AD39_RS29830;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29830;partial=true;pseudo=true;start_range=.,162907 NZ_JJLH01000048.1 Protein Homology CDS 162907 162972 . - 0 ID=cds-AD39_RS29830;Parent=gene-AD39_RS29830;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051204.1;locus_tag=AD39_RS29830;partial=true;product=hypothetical protein;pseudo=true;start_range=.,162907;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 163148 164617 . + . ID=gene-AD39_RS05050;Name=dtpB;gbkey=Gene;gene=dtpB;gene_biotype=protein_coding;locus_tag=AD39_RS05050;old_locus_tag=AD39_4041 NZ_JJLH01000048.1 Protein Homology CDS 163148 164617 . + 0 ID=cds-WP_021565448.1;Parent=gene-AD39_RS05050;Dbxref=GenBank:WP_021565448.1;Name=WP_021565448.1;gbkey=CDS;gene=dtpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417953.1;locus_tag=AD39_RS05050;product=dipeptide/tripeptide permease DtpB;protein_id=WP_021565448.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 164666 165418 . - . ID=gene-AD39_RS05045;Name=rsmJ;gbkey=Gene;gene=rsmJ;gene_biotype=protein_coding;locus_tag=AD39_RS05045;old_locus_tag=AD39_4042 NZ_JJLH01000048.1 Protein Homology CDS 164666 165418 . - 0 ID=cds-WP_001165119.1;Parent=gene-AD39_RS05045;Dbxref=GenBank:WP_001165119.1;Name=WP_001165119.1;Ontology_term=GO:0031167,GO:0008990;gbkey=CDS;gene=rsmJ;go_function=rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA methylation|0031167||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312396.1;locus_tag=AD39_RS05045;product=16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ;protein_id=WP_001165119.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 165424 167466 . - . ID=gene-AD39_RS05040;Name=prlC;gbkey=Gene;gene=prlC;gene_biotype=protein_coding;locus_tag=AD39_RS05040;old_locus_tag=AD39_4043 NZ_JJLH01000048.1 Protein Homology CDS 165424 167466 . - 0 ID=cds-WP_001295214.1;Parent=gene-AD39_RS05040;Dbxref=GenBank:WP_001295214.1;Name=WP_001295214.1;Ontology_term=GO:0006508,GO:0004222;gbkey=CDS;gene=prlC;go_function=metalloendopeptidase activity|0004222||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020317218.1;locus_tag=AD39_RS05040;product=oligopeptidase A;protein_id=WP_001295214.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 167669 168511 . + . ID=gene-AD39_RS05035;Name=rlmJ;gbkey=Gene;gene=rlmJ;gene_biotype=protein_coding;locus_tag=AD39_RS05035;old_locus_tag=AD39_4044 NZ_JJLH01000048.1 Protein Homology CDS 167669 168511 . + 0 ID=cds-WP_001474742.1;Parent=gene-AD39_RS05035;Dbxref=GenBank:WP_001474742.1;Name=WP_001474742.1;gbkey=CDS;gene=rlmJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312398.1;locus_tag=AD39_RS05035;product=23S rRNA (adenine(2030)-N(6))-methyltransferase;protein_id=WP_001474742.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 168583 169935 . + . ID=gene-AD39_RS05030;Name=gorA;gbkey=Gene;gene=gorA;gene_biotype=protein_coding;locus_tag=AD39_RS05030;old_locus_tag=AD39_4045 NZ_JJLH01000048.1 Protein Homology CDS 168583 169935 . + 0 ID=cds-WP_000160808.1;Parent=gene-AD39_RS05030;Dbxref=GenBank:WP_000160808.1;Name=WP_000160808.1;Ontology_term=GO:0006749,GO:0045454,GO:0004362,GO:0050660,GO:0050661;gbkey=CDS;gene=gorA;go_function=glutathione-disulfide reductase (NADPH) activity|0004362||IEA,flavin adenine dinucleotide binding|0050660||IEA,NADP binding|0050661||IEA;go_process=glutathione metabolic process|0006749||IEA,cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003861215.1;locus_tag=AD39_RS05030;product=glutathione-disulfide reductase;protein_id=WP_000160808.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 169989 170072 . - . ID=gene-AD39_RS05025;Name=dinQ;gbkey=Gene;gene=dinQ;gene_biotype=protein_coding;locus_tag=AD39_RS05025;old_locus_tag=AD39_4046 NZ_JJLH01000048.1 Protein Homology CDS 169989 170072 . - 0 ID=cds-WP_001295215.1;Parent=gene-AD39_RS05025;Dbxref=GenBank:WP_001295215.1;Name=WP_001295215.1;gbkey=CDS;gene=dinQ;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165328.2;locus_tag=AD39_RS05025;product=damage-inducible type I toxin DinQ;protein_id=WP_001295215.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 170812 171165 . + . ID=gene-AD39_RS05015;Name=arsR;gbkey=Gene;gene=arsR;gene_biotype=protein_coding;locus_tag=AD39_RS05015;old_locus_tag=AD39_4048 NZ_JJLH01000048.1 Protein Homology CDS 170812 171165 . + 0 ID=cds-WP_000008957.1;Parent=gene-AD39_RS05015;Dbxref=GenBank:WP_000008957.1;Name=WP_000008957.1;gbkey=CDS;gene=arsR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417958.1;locus_tag=AD39_RS05015;product=As(III)-sensing metalloregulatory transcriptional repressor ArsR;protein_id=WP_000008957.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 171219 172508 . + . ID=gene-AD39_RS05010;Name=arsB;gbkey=Gene;gene=arsB;gene_biotype=protein_coding;locus_tag=AD39_RS05010;old_locus_tag=AD39_4049 NZ_JJLH01000048.1 Protein Homology CDS 171219 172508 . + 0 ID=cds-WP_001347664.1;Parent=gene-AD39_RS05010;Dbxref=GenBank:WP_001347664.1;Name=WP_001347664.1;gbkey=CDS;gene=arsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312401.1;locus_tag=AD39_RS05010;product=arsenite/antimonite:H(+) antiporter ArsB;protein_id=WP_001347664.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 172521 172946 . + . ID=gene-AD39_RS05005;Name=arsC;gbkey=Gene;gene=arsC;gene_biotype=protein_coding;locus_tag=AD39_RS05005;old_locus_tag=AD39_4050 NZ_JJLH01000048.1 Protein Homology CDS 172521 172946 . + 0 ID=cds-WP_000065786.1;Parent=gene-AD39_RS05005;Dbxref=GenBank:WP_000065786.1;Name=WP_000065786.1;Ontology_term=GO:0008794;gbkey=CDS;gene=arsC;go_function=arsenate reductase (glutaredoxin) activity|0008794||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417960.1;locus_tag=AD39_RS05005;product=glutaredoxin-dependent arsenate reductase;protein_id=WP_000065786.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 173080 173376 . - . ID=gene-AD39_RS05000;Name=AD39_RS05000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS05000;old_locus_tag=AD39_4051 NZ_JJLH01000048.1 Protein Homology CDS 173080 173376 . - 0 ID=cds-WP_001175589.1;Parent=gene-AD39_RS05000;Dbxref=GenBank:WP_001175589.1;Name=WP_001175589.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001465662.1;locus_tag=AD39_RS05000;product=ArsR/SmtB family transcription factor;protein_id=WP_001175589.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 173483 174496 . + . ID=gene-AD39_RS04995;Name=AD39_RS04995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS04995;old_locus_tag=AD39_4052 NZ_JJLH01000048.1 Protein Homology CDS 173483 174496 . + 0 ID=cds-WP_000100287.1;Parent=gene-AD39_RS04995;Dbxref=GenBank:WP_000100287.1;Name=WP_000100287.1;Ontology_term=GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000100290.1;locus_tag=AD39_RS04995;product=permease;protein_id=WP_000100287.1;transl_table=11 NZ_JJLH01000048.1 RefSeq pseudogene 175077 176192 . + . ID=gene-AD39_RS0125410;Name=AD39_RS0125410;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125410;old_locus_tag=AD39_4053;pseudo=true NZ_JJLH01000048.1 Protein Homology CDS 175077 176192 . + 0 ID=cds-AD39_RS0125410;Parent=gene-AD39_RS0125410;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312403.1;locus_tag=AD39_RS0125410;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 176546 177112 . + . ID=gene-AD39_RS04990;Name=slp;gbkey=Gene;gene=slp;gene_biotype=protein_coding;locus_tag=AD39_RS04990;old_locus_tag=AD39_4054 NZ_JJLH01000048.1 Protein Homology CDS 176546 177112 . + 0 ID=cds-WP_001057453.1;Parent=gene-AD39_RS04990;Dbxref=GenBank:WP_001057453.1;Name=WP_001057453.1;gbkey=CDS;gene=slp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312404.2;locus_tag=AD39_RS04990;product=outer membrane lipoprotein Slp;protein_id=WP_001057453.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 177268 177798 . + . ID=gene-AD39_RS04985;Name=dctR;gbkey=Gene;gene=dctR;gene_biotype=protein_coding;locus_tag=AD39_RS04985;old_locus_tag=AD39_4055 NZ_JJLH01000048.1 Protein Homology CDS 177268 177798 . + 0 ID=cds-WP_000478619.1;Parent=gene-AD39_RS04985;Dbxref=GenBank:WP_000478619.1;Name=WP_000478619.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=dctR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417964.1;locus_tag=AD39_RS04985;product=helix-turn-helix transcriptional regulator;protein_id=WP_000478619.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 177840 178487 . - . ID=gene-AD39_RS04980;Name=yhiD;gbkey=Gene;gene=yhiD;gene_biotype=protein_coding;locus_tag=AD39_RS04980;old_locus_tag=AD39_4056 NZ_JJLH01000048.1 Protein Homology CDS 177840 178487 . - 0 ID=cds-WP_001307446.1;Parent=gene-AD39_RS04980;Dbxref=GenBank:WP_001307446.1;Name=WP_001307446.1;gbkey=CDS;gene=yhiD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417965.1;locus_tag=AD39_RS04980;product=MgtC/SapB family protein;protein_id=WP_001307446.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 178551 178877 . - . ID=gene-AD39_RS04975;Name=hdeB;gbkey=Gene;gene=hdeB;gene_biotype=protein_coding;locus_tag=AD39_RS04975;old_locus_tag=AD39_4057 NZ_JJLH01000048.1 Protein Homology CDS 178551 178877 . - 0 ID=cds-WP_001298717.1;Parent=gene-AD39_RS04975;Dbxref=GenBank:WP_001298717.1;Name=WP_001298717.1;gbkey=CDS;gene=hdeB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417966.4;locus_tag=AD39_RS04975;product=acid-activated periplasmic chaperone HdeB;protein_id=WP_001298717.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 178993 179325 . - . ID=gene-AD39_RS04970;Name=hdeA;gbkey=Gene;gene=hdeA;gene_biotype=protein_coding;locus_tag=AD39_RS04970;old_locus_tag=AD39_4058 NZ_JJLH01000048.1 Protein Homology CDS 178993 179325 . - 0 ID=cds-WP_000756550.1;Parent=gene-AD39_RS04970;Dbxref=GenBank:WP_000756550.1;Name=WP_000756550.1;gbkey=CDS;gene=hdeA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312417.1;locus_tag=AD39_RS04970;product=acid-activated periplasmic chaperone HdeA;protein_id=WP_000756550.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 179580 180152 . + . ID=gene-AD39_RS04965;Name=hdeD;gbkey=Gene;gene=hdeD;gene_biotype=protein_coding;locus_tag=AD39_RS04965;old_locus_tag=AD39_4059 NZ_JJLH01000048.1 Protein Homology CDS 179580 180152 . + 0 ID=cds-WP_000965672.1;Parent=gene-AD39_RS04965;Dbxref=GenBank:WP_000965672.1;Name=WP_000965672.1;gbkey=CDS;gene=hdeD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312418.1;locus_tag=AD39_RS04965;product=acid-resistance protein HdeD;protein_id=WP_000965672.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 180951 181478 . + . ID=gene-AD39_RS04960;Name=gadE;gbkey=Gene;gene=gadE;gene_biotype=protein_coding;locus_tag=AD39_RS04960;old_locus_tag=AD39_4060 NZ_JJLH01000048.1 Protein Homology CDS 180951 181478 . + 0 ID=cds-WP_000576690.1;Parent=gene-AD39_RS04960;Dbxref=GenBank:WP_000576690.1;Name=WP_000576690.1;gbkey=CDS;gene=gadE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312419.1;locus_tag=AD39_RS04960;product=acid resistance transcriptional activator GadE;protein_id=WP_000576690.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 181479 181757 . - . ID=gene-AD39_RS0125415;Name=AD39_RS0125415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125415 NZ_JJLH01000048.1 Protein Homology CDS 181479 181757 . - 0 ID=cds-WP_001205333.1;Parent=gene-AD39_RS0125415;Dbxref=GenBank:WP_001205333.1;Name=WP_001205333.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_008439288.1;locus_tag=AD39_RS0125415;product=hypothetical protein;protein_id=WP_001205333.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 181865 182974 . + . ID=gene-AD39_RS04955;Name=mdtE;gbkey=Gene;gene=mdtE;gene_biotype=protein_coding;locus_tag=AD39_RS04955;old_locus_tag=AD39_4061 NZ_JJLH01000048.1 Protein Homology CDS 181865 182974 . + 0 ID=cds-WP_001340474.1;Parent=gene-AD39_RS04955;Dbxref=GenBank:WP_001340474.1;Name=WP_001340474.1;gbkey=CDS;gene=mdtE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001081792.1;locus_tag=AD39_RS04955;product=multidrug transporter subunit MdtE;protein_id=WP_001340474.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 182999 186112 . + . ID=gene-AD39_RS04950;Name=mdtF;gbkey=Gene;gene=mdtF;gene_biotype=protein_coding;locus_tag=AD39_RS04950;old_locus_tag=AD39_4062 NZ_JJLH01000048.1 Protein Homology CDS 182999 186112 . + 0 ID=cds-WP_001472477.1;Parent=gene-AD39_RS04950;Dbxref=GenBank:WP_001472477.1;Name=WP_001472477.1;gbkey=CDS;gene=mdtF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312421.1;locus_tag=AD39_RS04950;product=multidrug efflux pump RND permease MdtF;protein_id=WP_001472477.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 186475 187203 . - . ID=gene-AD39_RS04945;Name=gadW;gbkey=Gene;gene=gadW;gene_biotype=protein_coding;locus_tag=AD39_RS04945;old_locus_tag=AD39_4063 NZ_JJLH01000048.1 Protein Homology CDS 186475 187203 . - 0 ID=cds-WP_000149991.1;Parent=gene-AD39_RS04945;Dbxref=GenBank:WP_000149991.1;Name=WP_000149991.1;gbkey=CDS;gene=gadW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312422.1;locus_tag=AD39_RS04945;product=acid resistance transcriptional activator GadW;protein_id=WP_000149991.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 187571 188395 . - . ID=gene-AD39_RS04940;Name=gadX;gbkey=Gene;gene=gadX;gene_biotype=protein_coding;locus_tag=AD39_RS04940;old_locus_tag=AD39_4064 NZ_JJLH01000048.1 Protein Homology CDS 187571 188395 . - 0 ID=cds-WP_001191068.1;Parent=gene-AD39_RS04940;Dbxref=GenBank:WP_001191068.1;Name=WP_001191068.1;gbkey=CDS;gene=gadX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709339.1;locus_tag=AD39_RS04940;product=acid resistance transcriptional activator GadX;protein_id=WP_001191068.1;transl_table=11 NZ_JJLH01000048.1 RefSeq gene 188765 189871 . - . ID=gene-AD39_RS04935;Name=AD39_RS04935;end_range=189871,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS04935;old_locus_tag=AD39_4065;partial=true NZ_JJLH01000048.1 Protein Homology CDS 188765 189871 . - 0 ID=cds-WP_032180709.1;Parent=gene-AD39_RS04935;Dbxref=GenBank:WP_032180709.1;Name=WP_032180709.1;Ontology_term=GO:0006540,GO:0004351,GO:0030170;end_range=189871,.;gbkey=CDS;go_function=glutamate decarboxylase activity|0004351||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=gamma-aminobutyrate shunt|0006540||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310125.1;locus_tag=AD39_RS04935;partial=true;product=glutamate decarboxylase;protein_id=WP_032180709.1;transl_table=11 ##sequence-region NZ_JJLH01000049.1 1 1213 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000049.1 RefSeq region 1 1213 . + . ID=NZ_JJLH01000049.1:1..1213;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000049.1 RefSeq pseudogene 746 836 . + . ID=gene-AD39_RS30225;Name=AD39_RS30225;end_range=836,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30225;partial=true;pseudo=true;start_range=.,746 NZ_JJLH01000049.1 Protein Homology CDS 746 836 . + 0 ID=cds-AD39_RS30225;Parent=gene-AD39_RS30225;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=836,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000272652.1;locus_tag=AD39_RS30225;partial=true;product=RHS repeat-associated core domain-containing protein;pseudo=true;start_range=.,746;transl_table=11 NZ_JJLH01000049.1 RefSeq gene 1010 1213 . + . ID=gene-AD39_RS04925;Name=AD39_RS04925;end_range=1213,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS04925;old_locus_tag=AD39_4067;partial=true NZ_JJLH01000049.1 Protein Homology CDS 1010 1213 . + 0 ID=cds-WP_032287636.1;Parent=gene-AD39_RS04925;Dbxref=GenBank:WP_032287636.1;Name=WP_032287636.1;end_range=1213,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000420980.1;locus_tag=AD39_RS04925;partial=true;product=ISAs1 family transposase;protein_id=WP_032287636.1;transl_table=11 ##sequence-region NZ_JJLH01000050.1 1 55930 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000050.1 RefSeq region 1 55930 . + . ID=NZ_JJLH01000050.1:1..55930;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000050.1 RefSeq gene 1 1394 . - . ID=gene-AD39_RS04920;Name=gadA;gbkey=Gene;gene=gadA;gene_biotype=protein_coding;locus_tag=AD39_RS04920;old_locus_tag=AD39_4068;partial=true;start_range=.,1 NZ_JJLH01000050.1 Protein Homology CDS 1 1394 . - 0 ID=cds-WP_001466450.1;Parent=gene-AD39_RS04920;Dbxref=GenBank:WP_001466450.1;Name=WP_001466450.1;Ontology_term=GO:0006540,GO:0004351,GO:0030170;gbkey=CDS;gene=gadA;go_function=glutamate decarboxylase activity|0004351||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=gamma-aminobutyrate shunt|0006540||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417974.1;locus_tag=AD39_RS04920;partial=true;product=glutamate decarboxylase;protein_id=WP_001466450.1;start_range=.,1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 1605 3002 . - . ID=gene-AD39_RS04915;Name=ccp;gbkey=Gene;gene=ccp;gene_biotype=protein_coding;locus_tag=AD39_RS04915;old_locus_tag=AD39_4069 NZ_JJLH01000050.1 Protein Homology CDS 1605 3002 . - 0 ID=cds-WP_000784821.1;Parent=gene-AD39_RS04915;Dbxref=GenBank:WP_000784821.1;Name=WP_000784821.1;gbkey=CDS;gene=ccp;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312425.1;locus_tag=AD39_RS04915;product=cytochrome c peroxidase;protein_id=WP_000784821.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 3407 5056 . + . ID=gene-AD39_RS04910;Name=treF;gbkey=Gene;gene=treF;gene_biotype=protein_coding;locus_tag=AD39_RS04910;old_locus_tag=AD39_4070 NZ_JJLH01000050.1 Protein Homology CDS 3407 5056 . + 0 ID=cds-WP_000934218.1;Parent=gene-AD39_RS04910;Dbxref=GenBank:WP_000934218.1;Name=WP_000934218.1;Ontology_term=GO:0005993,GO:0004555;gbkey=CDS;gene=treF;go_function=alpha%2Calpha-trehalase activity|0004555||IEA;go_process=trehalose catabolic process|0005993||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709297.1;locus_tag=AD39_RS04910;product=alpha%2Calpha-trehalase;protein_id=WP_000934218.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 5107 5709 . - . ID=gene-AD39_RS04905;Name=yhjB;gbkey=Gene;gene=yhjB;gene_biotype=protein_coding;locus_tag=AD39_RS04905;old_locus_tag=AD39_4071 NZ_JJLH01000050.1 Protein Homology CDS 5107 5709 . - 0 ID=cds-WP_032287637.1;Parent=gene-AD39_RS04905;Dbxref=GenBank:WP_032287637.1;Name=WP_032287637.1;Ontology_term=GO:0006355;gbkey=CDS;gene=yhjB;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417977.1;locus_tag=AD39_RS04905;product=helix-turn-helix transcriptional regulator;protein_id=WP_032287637.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 6229 7128 . + . ID=gene-AD39_RS04900;Name=rcdB;gbkey=Gene;gene=rcdB;gene_biotype=protein_coding;locus_tag=AD39_RS04900;old_locus_tag=AD39_4073 NZ_JJLH01000050.1 Protein Homology CDS 6229 7128 . + 0 ID=cds-WP_001307449.1;Parent=gene-AD39_RS04900;Dbxref=GenBank:WP_001307449.1;Name=WP_001307449.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=rcdB;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417978.2;locus_tag=AD39_RS04900;product=LysR family transcriptional regulator;protein_id=WP_001307449.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 7177 8190 . + . ID=gene-AD39_RS04895;Name=yhjD;gbkey=Gene;gene=yhjD;gene_biotype=protein_coding;locus_tag=AD39_RS04895;old_locus_tag=AD39_4074 NZ_JJLH01000050.1 Protein Homology CDS 7177 8190 . + 0 ID=cds-WP_000191257.1;Parent=gene-AD39_RS04895;Dbxref=GenBank:WP_000191257.1;Name=WP_000191257.1;gbkey=CDS;gene=yhjD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312429.1;locus_tag=AD39_RS04895;product=inner membrane protein YhjD;protein_id=WP_000191257.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 8601 9923 . + . ID=gene-AD39_RS04890;Name=yhjE;gbkey=Gene;gene=yhjE;gene_biotype=protein_coding;locus_tag=AD39_RS04890;old_locus_tag=AD39_4075 NZ_JJLH01000050.1 Protein Homology CDS 8601 9923 . + 0 ID=cds-WP_001149002.1;Parent=gene-AD39_RS04890;Dbxref=GenBank:WP_001149002.1;Name=WP_001149002.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yhjE;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417980.1;locus_tag=AD39_RS04890;product=MFS transporter;protein_id=WP_001149002.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 10157 12217 . - . ID=gene-AD39_RS04885;Name=yhjG;gbkey=Gene;gene=yhjG;gene_biotype=protein_coding;locus_tag=AD39_RS04885;old_locus_tag=AD39_4076 NZ_JJLH01000050.1 Protein Homology CDS 10157 12217 . - 0 ID=cds-WP_001481885.1;Parent=gene-AD39_RS04885;Dbxref=GenBank:WP_001481885.1;Name=WP_001481885.1;gbkey=CDS;gene=yhjG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417981.2;locus_tag=AD39_RS04885;product=AsmA family protein;protein_id=WP_001481885.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 12287 13054 . - . ID=gene-AD39_RS0125425;Name=pdeH;gbkey=Gene;gene=pdeH;gene_biotype=protein_coding;locus_tag=AD39_RS0125425;old_locus_tag=AD39_4077 NZ_JJLH01000050.1 Protein Homology CDS 12287 13054 . - 0 ID=cds-WP_001295219.1;Parent=gene-AD39_RS0125425;Dbxref=GenBank:WP_001295219.1;Name=WP_001295219.1;gbkey=CDS;gene=pdeH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417982.2;locus_tag=AD39_RS0125425;product=cyclic-guanylate-specific phosphodiesterase;protein_id=WP_001295219.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 13286 14215 . + . ID=gene-AD39_RS04880;Name=kdgK;gbkey=Gene;gene=kdgK;gene_biotype=protein_coding;locus_tag=AD39_RS04880;old_locus_tag=AD39_4079 NZ_JJLH01000050.1 Protein Homology CDS 13286 14215 . + 0 ID=cds-WP_001296796.1;Parent=gene-AD39_RS04880;Dbxref=GenBank:WP_001296796.1;Name=WP_001296796.1;gbkey=CDS;gene=kdgK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417983.2;locus_tag=AD39_RS04880;product=2-dehydro-3-deoxygluconokinase;protein_id=WP_001296796.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 14311 15807 . - . ID=gene-AD39_RS04875;Name=yhjJ;gbkey=Gene;gene=yhjJ;gene_biotype=protein_coding;locus_tag=AD39_RS04875;old_locus_tag=AD39_4080 NZ_JJLH01000050.1 Protein Homology CDS 14311 15807 . - 0 ID=cds-WP_001163149.1;Parent=gene-AD39_RS04875;Dbxref=GenBank:WP_001163149.1;Name=WP_001163149.1;Ontology_term=GO:0008237,GO:0046872;gbkey=CDS;gene=yhjJ;go_function=metallopeptidase activity|0008237||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312434.1;locus_tag=AD39_RS04875;product=M16 family metallopeptidase;protein_id=WP_001163149.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 16028 17314 . - . ID=gene-AD39_RS04870;Name=dctA;gbkey=Gene;gene=dctA;gene_biotype=protein_coding;locus_tag=AD39_RS04870;old_locus_tag=AD39_4081 NZ_JJLH01000050.1 Protein Homology CDS 16028 17314 . - 0 ID=cds-WP_000858214.1;Parent=gene-AD39_RS04870;Dbxref=GenBank:WP_000858214.1;Name=WP_000858214.1;gbkey=CDS;gene=dctA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417985.1;locus_tag=AD39_RS04870;product=C4-dicarboxylate transporter DctC;protein_id=WP_000858214.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 17497 19485 . - . ID=gene-AD39_RS04865;Name=hmsP;gbkey=Gene;gene=hmsP;gene_biotype=protein_coding;locus_tag=AD39_RS04865;old_locus_tag=AD39_4083 NZ_JJLH01000050.1 Protein Homology CDS 17497 19485 . - 0 ID=cds-WP_001266306.1;Parent=gene-AD39_RS04865;Dbxref=GenBank:WP_001266306.1;Name=WP_001266306.1;Ontology_term=GO:0007165;gbkey=CDS;gene=hmsP;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417986.4;locus_tag=AD39_RS04865;product=biofilm formation regulator HmsP;protein_id=WP_001266306.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 19567 23040 . - . ID=gene-AD39_RS04860;Name=bcsC;gbkey=Gene;gene=bcsC;gene_biotype=protein_coding;locus_tag=AD39_RS04860;old_locus_tag=AD39_4084 NZ_JJLH01000050.1 Protein Homology CDS 19567 23040 . - 0 ID=cds-WP_032287638.1;Parent=gene-AD39_RS04860;Dbxref=GenBank:WP_032287638.1;Name=WP_032287638.1;Ontology_term=GO:0030244,GO:0005515,GO:0019867;gbkey=CDS;gene=bcsC;go_component=outer membrane|0019867||IEA;go_function=protein binding|0005515||IEA;go_process=cellulose biosynthetic process|0030244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026226.4;locus_tag=AD39_RS04860;product=cellulose synthase complex outer membrane protein BcsC;protein_id=WP_032287638.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 23022 24128 . - . ID=gene-AD39_RS04855;Name=bcsZ;gbkey=Gene;gene=bcsZ;gene_biotype=protein_coding;locus_tag=AD39_RS04855;old_locus_tag=AD39_4085 NZ_JJLH01000050.1 Protein Homology CDS 23022 24128 . - 0 ID=cds-WP_024168656.1;Parent=gene-AD39_RS04855;Dbxref=GenBank:WP_024168656.1;Name=WP_024168656.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=bcsZ;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312438.1;locus_tag=AD39_RS04855;product=cellulose synthase complex periplasmic endoglucanase BcsZ;protein_id=WP_024168656.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 24135 26474 . - . ID=gene-AD39_RS04850;Name=bcsB;gbkey=Gene;gene=bcsB;gene_biotype=protein_coding;locus_tag=AD39_RS04850;old_locus_tag=AD39_4086 NZ_JJLH01000050.1 Protein Homology CDS 24135 26474 . - 0 ID=cds-WP_032254791.1;Parent=gene-AD39_RS04850;Dbxref=GenBank:WP_032254791.1;Name=WP_032254791.1;gbkey=CDS;gene=bcsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417989.1;locus_tag=AD39_RS04850;product=cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB;protein_id=WP_032254791.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 26485 29103 . - . ID=gene-AD39_RS04845;Name=bcsA;gbkey=Gene;gene=bcsA;gene_biotype=protein_coding;locus_tag=AD39_RS04845;old_locus_tag=AD39_4087 NZ_JJLH01000050.1 Protein Homology CDS 26485 29103 . - 0 ID=cds-WP_000025914.1;Parent=gene-AD39_RS04845;Dbxref=GenBank:WP_000025914.1;Name=WP_000025914.1;Ontology_term=GO:0006011,GO:0030244,GO:0016760,GO:0035438,GO:0016020;gbkey=CDS;gene=bcsA;go_component=membrane|0016020||IEA;go_function=cellulose synthase (UDP-forming) activity|0016760||IEA,cyclic-di-GMP binding|0035438||IEA;go_process=UDP-alpha-D-glucose metabolic process|0006011||IEA,cellulose biosynthetic process|0030244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417990.4;locus_tag=AD39_RS04845;product=UDP-forming cellulose synthase catalytic subunit;protein_id=WP_000025914.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 29100 29852 . - . ID=gene-AD39_RS04840;Name=bcsQ;gbkey=Gene;gene=bcsQ;gene_biotype=protein_coding;locus_tag=AD39_RS04840;old_locus_tag=AD39_4088 NZ_JJLH01000050.1 Protein Homology CDS 29100 29852 . - 0 ID=cds-WP_000279528.1;Parent=gene-AD39_RS04840;Dbxref=GenBank:WP_000279528.1;Name=WP_000279528.1;gbkey=CDS;gene=bcsQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709309.1;locus_tag=AD39_RS04840;product=cellulose biosynthesis protein BcsQ;protein_id=WP_000279528.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 29864 30052 . - . ID=gene-AD39_RS04835;Name=bcsR;gbkey=Gene;gene=bcsR;gene_biotype=protein_coding;locus_tag=AD39_RS04835;old_locus_tag=AD39_4089 NZ_JJLH01000050.1 Protein Homology CDS 29864 30052 . - 0 ID=cds-WP_001063318.1;Parent=gene-AD39_RS04835;Dbxref=GenBank:WP_001063318.1;Name=WP_001063318.1;gbkey=CDS;gene=bcsR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417992.1;locus_tag=AD39_RS04835;product=cellulose biosynthesis protein BcsR;protein_id=WP_001063318.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 30325 31896 . + . ID=gene-AD39_RS04830;Name=bcsE;gbkey=Gene;gene=bcsE;gene_biotype=protein_coding;locus_tag=AD39_RS04830;old_locus_tag=AD39_4090 NZ_JJLH01000050.1 Protein Homology CDS 30325 31896 . + 0 ID=cds-WP_001204906.1;Parent=gene-AD39_RS04830;Dbxref=GenBank:WP_001204906.1;Name=WP_001204906.1;Ontology_term=GO:0035438;gbkey=CDS;gene=bcsE;go_function=cyclic-di-GMP binding|0035438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417993.1;locus_tag=AD39_RS04830;product=cellulose biosynthesis c-di-GMP-binding protein BcsE;protein_id=WP_001204906.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 31893 32084 . + . ID=gene-AD39_RS04825;Name=bcsF;gbkey=Gene;gene=bcsF;gene_biotype=protein_coding;locus_tag=AD39_RS04825;old_locus_tag=AD39_4091 NZ_JJLH01000050.1 Protein Homology CDS 31893 32084 . + 0 ID=cds-WP_000988308.1;Parent=gene-AD39_RS04825;Dbxref=GenBank:WP_000988308.1;Name=WP_000988308.1;Ontology_term=GO:0052324;gbkey=CDS;gene=bcsF;go_process=plant-type cell wall cellulose biosynthetic process|0052324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_417994.2;locus_tag=AD39_RS04825;product=cellulose biosynthesis protein BcsF;protein_id=WP_000988308.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 32081 33760 . + . ID=gene-AD39_RS04820;Name=bcsG;gbkey=Gene;gene=bcsG;gene_biotype=protein_coding;locus_tag=AD39_RS04820;old_locus_tag=AD39_4092 NZ_JJLH01000050.1 Protein Homology CDS 32081 33760 . + 0 ID=cds-WP_000191590.1;Parent=gene-AD39_RS04820;Dbxref=GenBank:WP_000191590.1;Name=WP_000191590.1;Ontology_term=GO:0030244;gbkey=CDS;gene=bcsG;go_process=cellulose biosynthetic process|0030244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312445.1;locus_tag=AD39_RS04820;product=cellulose biosynthesis protein BcsG;protein_id=WP_000191590.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 33846 33953 . - . ID=gene-AD39_RS29255;Name=AD39_RS29255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29255 NZ_JJLH01000050.1 Protein Homology CDS 33846 33953 . - 0 ID=cds-WP_001295224.1;Parent=gene-AD39_RS29255;Dbxref=GenBank:WP_001295224.1;Name=WP_001295224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502657.1;locus_tag=AD39_RS29255;product=type I toxin-antitoxin system toxin Ldr family protein;protein_id=WP_001295224.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 34329 34436 . - . ID=gene-AD39_RS29260;Name=AD39_RS29260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29260 NZ_JJLH01000050.1 Protein Homology CDS 34329 34436 . - 0 ID=cds-WP_001295224.1-2;Parent=gene-AD39_RS29260;Dbxref=GenBank:WP_001295224.1;Name=WP_001295224.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502657.1;locus_tag=AD39_RS29260;product=type I toxin-antitoxin system toxin Ldr family protein;protein_id=WP_001295224.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 34812 34919 . - . ID=gene-AD39_RS27745;Name=ldrD;gbkey=Gene;gene=ldrD;gene_biotype=protein_coding;locus_tag=AD39_RS27745 NZ_JJLH01000050.1 Protein Homology CDS 34812 34919 . - 0 ID=cds-WP_000141634.1;Parent=gene-AD39_RS27745;Dbxref=GenBank:WP_000141634.1;Name=WP_000141634.1;gbkey=CDS;gene=ldrD;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026227.1;locus_tag=AD39_RS27745;product=type I toxin-antitoxin system toxic polypeptide LdrD;protein_id=WP_000141634.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 35395 36666 . + . ID=gene-AD39_RS04795;Name=yhjV;gbkey=Gene;gene=yhjV;gene_biotype=protein_coding;locus_tag=AD39_RS04795;old_locus_tag=AD39_4099 NZ_JJLH01000050.1 Protein Homology CDS 35395 36666 . + 0 ID=cds-WP_023140484.1;Parent=gene-AD39_RS04795;Dbxref=GenBank:WP_023140484.1;Name=WP_023140484.1;Ontology_term=GO:0003333;gbkey=CDS;gene=yhjV;go_process=amino acid transmembrane transport|0003333||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312446.1;locus_tag=AD39_RS04795;product=aromatic amino acid transport family protein;protein_id=WP_023140484.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 36696 37700 . - . ID=gene-AD39_RS04790;Name=dppF;gbkey=Gene;gene=dppF;gene_biotype=protein_coding;locus_tag=AD39_RS04790;old_locus_tag=AD39_4100 NZ_JJLH01000050.1 Protein Homology CDS 36696 37700 . - 0 ID=cds-WP_000107030.1;Parent=gene-AD39_RS04790;Dbxref=GenBank:WP_000107030.1;Name=WP_000107030.1;gbkey=CDS;gene=dppF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312447.1;locus_tag=AD39_RS04790;product=dipeptide ABC transporter ATP-binding subunit DppF;protein_id=WP_000107030.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 37697 38680 . - . ID=gene-AD39_RS04785;Name=dppD;gbkey=Gene;gene=dppD;gene_biotype=protein_coding;locus_tag=AD39_RS04785;old_locus_tag=AD39_4101 NZ_JJLH01000050.1 Protein Homology CDS 37697 38680 . - 0 ID=cds-WP_001196486.1;Parent=gene-AD39_RS04785;Dbxref=GenBank:WP_001196486.1;Name=WP_001196486.1;Ontology_term=GO:0015833,GO:0000166,GO:0005524;gbkey=CDS;gene=dppD;go_function=nucleotide binding|0000166||IEA,ATP binding|0005524||IEA;go_process=peptide transport|0015833||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312448.1;locus_tag=AD39_RS04785;product=dipeptide ABC transporter ATP-binding protein;protein_id=WP_001196486.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 38691 39593 . - . ID=gene-AD39_RS04780;Name=dppC;gbkey=Gene;gene=dppC;gene_biotype=protein_coding;locus_tag=AD39_RS04780;old_locus_tag=AD39_4102 NZ_JJLH01000050.1 Protein Homology CDS 38691 39593 . - 0 ID=cds-WP_000084677.1;Parent=gene-AD39_RS04780;Dbxref=GenBank:WP_000084677.1;Name=WP_000084677.1;Ontology_term=GO:0055085;gbkey=CDS;gene=dppC;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010426221.1;locus_tag=AD39_RS04780;product=dipeptide ABC transporter permease DppC;protein_id=WP_000084677.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 39603 40622 . - . ID=gene-AD39_RS04775;Name=dppB;gbkey=Gene;gene=dppB;gene_biotype=protein_coding;locus_tag=AD39_RS04775;old_locus_tag=AD39_4103 NZ_JJLH01000050.1 Protein Homology CDS 39603 40622 . - 0 ID=cds-WP_000938855.1;Parent=gene-AD39_RS04775;Dbxref=GenBank:WP_000938855.1;Name=WP_000938855.1;gbkey=CDS;gene=dppB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133865.1;locus_tag=AD39_RS04775;product=dipeptide ABC transporter permease DppB;protein_id=WP_000938855.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 40930 42537 . - . ID=gene-AD39_RS04770;Name=dppA;gbkey=Gene;gene=dppA;gene_biotype=protein_coding;locus_tag=AD39_RS04770;old_locus_tag=AD39_4105 NZ_JJLH01000050.1 Protein Homology CDS 40930 42537 . - 0 ID=cds-WP_001222883.1;Parent=gene-AD39_RS04770;Dbxref=GenBank:WP_001222883.1;Name=WP_001222883.1;gbkey=CDS;gene=dppA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418001.1;locus_tag=AD39_RS04770;product=dipeptide ABC transporter substrate-binding protein DppA;protein_id=WP_001222883.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 43281 43357 . - . ID=gene-AD39_RS04765;Name=AD39_RS04765;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS04765;old_locus_tag=AD39_4107 NZ_JJLH01000050.1 tRNAscan-SE tRNA 43281 43357 . - . ID=rna-AD39_RS04765;Parent=gene-AD39_RS04765;anticodon=(pos:complement(43321..43323));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS04765;product=tRNA-Pro NZ_JJLH01000050.1 tRNAscan-SE exon 43281 43357 . - . ID=exon-AD39_RS04765-1;Parent=rna-AD39_RS04765;anticodon=(pos:complement(43321..43323));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS04765;product=tRNA-Pro NZ_JJLH01000050.1 RefSeq gene 43449 45140 . - . ID=gene-AD39_RS04760;Name=eptB;gbkey=Gene;gene=eptB;gene_biotype=protein_coding;locus_tag=AD39_RS04760;old_locus_tag=AD39_4108 NZ_JJLH01000050.1 Protein Homology CDS 43449 45140 . - 0 ID=cds-WP_032283577.1;Parent=gene-AD39_RS04760;Dbxref=GenBank:WP_032283577.1;Name=WP_032283577.1;Ontology_term=GO:0008484;gbkey=CDS;gene=eptB;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418002.2;locus_tag=AD39_RS04760;product=kdo(2)-lipid A phosphoethanolamine 7''-transferase;protein_id=WP_032283577.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 45465 46673 . - . ID=gene-AD39_RS04755;Name=yhjX;gbkey=Gene;gene=yhjX;gene_biotype=protein_coding;locus_tag=AD39_RS04755;old_locus_tag=AD39_4110 NZ_JJLH01000050.1 Protein Homology CDS 45465 46673 . - 0 ID=cds-WP_032283578.1;Parent=gene-AD39_RS04755;Dbxref=GenBank:WP_032283578.1;Name=WP_032283578.1;Ontology_term=GO:0015129;gbkey=CDS;gene=yhjX;go_function=lactate transmembrane transporter activity|0015129||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418003.1;locus_tag=AD39_RS04755;product=L-lactate MFS transporter;protein_id=WP_032283578.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 46902 47600 . - . ID=gene-AD39_RS04750;Name=yhjY;gbkey=Gene;gene=yhjY;gene_biotype=protein_coding;locus_tag=AD39_RS04750;old_locus_tag=AD39_4111 NZ_JJLH01000050.1 Protein Homology CDS 46902 47600 . - 0 ID=cds-WP_000584464.1;Parent=gene-AD39_RS04750;Dbxref=GenBank:WP_000584464.1;Name=WP_000584464.1;gbkey=CDS;gene=yhjY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312460.2;locus_tag=AD39_RS04750;product=autotransporter outer membrane beta-barrel domain-containing protein;protein_id=WP_000584464.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 47758 48321 . + . ID=gene-AD39_RS04745;Name=tag;gbkey=Gene;gene=tag;gene_biotype=protein_coding;locus_tag=AD39_RS04745;old_locus_tag=AD39_4112 NZ_JJLH01000050.1 Protein Homology CDS 47758 48321 . + 0 ID=cds-WP_000438953.1;Parent=gene-AD39_RS04745;Dbxref=GenBank:WP_000438953.1;Name=WP_000438953.1;gbkey=CDS;gene=tag;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418005.1;locus_tag=AD39_RS04745;product=DNA-3-methyladenine glycosylase I;protein_id=WP_000438953.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 48318 48758 . + . ID=gene-AD39_RS04740;Name=yiaC;gbkey=Gene;gene=yiaC;gene_biotype=protein_coding;locus_tag=AD39_RS04740;old_locus_tag=AD39_4113 NZ_JJLH01000050.1 Protein Homology CDS 48318 48758 . + 0 ID=cds-WP_000617478.1;Parent=gene-AD39_RS04740;Dbxref=GenBank:WP_000617478.1;Name=WP_000617478.1;Ontology_term=GO:0008080;gbkey=CDS;gene=yiaC;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709328.1;locus_tag=AD39_RS04740;product=N-acetyltransferase;protein_id=WP_000617478.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 48727 51060 . - . ID=gene-AD39_RS04735;Name=bisC;gbkey=Gene;gene=bisC;gene_biotype=protein_coding;locus_tag=AD39_RS04735;old_locus_tag=AD39_4114 NZ_JJLH01000050.1 Protein Homology CDS 48727 51060 . - 0 ID=cds-WP_071998424.1;Parent=gene-AD39_RS04735;Dbxref=GenBank:WP_071998424.1;Name=WP_071998424.1;gbkey=CDS;gene=bisC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418007.3;locus_tag=AD39_RS04735;product=biotin sulfoxide reductase;protein_id=WP_071998424.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 51213 51872 . + . ID=gene-AD39_RS04730;Name=yiaD;gbkey=Gene;gene=yiaD;gene_biotype=protein_coding;locus_tag=AD39_RS04730;old_locus_tag=AD39_4115 NZ_JJLH01000050.1 Protein Homology CDS 51213 51872 . + 0 ID=cds-WP_000747625.1;Parent=gene-AD39_RS04730;Dbxref=GenBank:WP_000747625.1;Name=WP_000747625.1;Ontology_term=GO:0009279;gbkey=CDS;gene=yiaD;go_component=cell outer membrane|0009279||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312464.1;locus_tag=AD39_RS04730;product=OmpA family lipoprotein;protein_id=WP_000747625.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 51976 52950 . + . ID=gene-AD39_RS04725;Name=ghrB;gbkey=Gene;gene=ghrB;gene_biotype=protein_coding;locus_tag=AD39_RS04725;old_locus_tag=AD39_4116 NZ_JJLH01000050.1 Protein Homology CDS 51976 52950 . + 0 ID=cds-WP_000805027.1;Parent=gene-AD39_RS04725;Dbxref=GenBank:WP_000805027.1;Name=WP_000805027.1;Ontology_term=GO:0016616,GO:0051287;gbkey=CDS;gene=ghrB;go_function=oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,NAD binding|0051287||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312465.2;locus_tag=AD39_RS04725;product=glyoxylate/hydroxypyruvate reductase GhrB;protein_id=WP_000805027.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 53000 53710 . - . ID=gene-AD39_RS04720;Name=yiaF;gbkey=Gene;gene=yiaF;gene_biotype=protein_coding;locus_tag=AD39_RS04720;old_locus_tag=AD39_4117 NZ_JJLH01000050.1 Protein Homology CDS 53000 53710 . - 0 ID=cds-WP_000190517.1;Parent=gene-AD39_RS04720;Dbxref=GenBank:WP_000190517.1;Name=WP_000190517.1;gbkey=CDS;gene=yiaF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418010.2;locus_tag=AD39_RS04720;product=DUF3053 domain-containing protein;protein_id=WP_000190517.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 54144 54434 . + . ID=gene-AD39_RS04715;Name=yiaG;gbkey=Gene;gene=yiaG;gene_biotype=protein_coding;locus_tag=AD39_RS04715;old_locus_tag=AD39_4118 NZ_JJLH01000050.1 Protein Homology CDS 54144 54434 . + 0 ID=cds-WP_000455798.1;Parent=gene-AD39_RS04715;Dbxref=GenBank:WP_000455798.1;Name=WP_000455798.1;gbkey=CDS;gene=yiaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312467.1;locus_tag=AD39_RS04715;product=HTH-type transcriptional regulator;protein_id=WP_000455798.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 54715 54927 . + . ID=gene-AD39_RS04710;Name=cspE;gbkey=Gene;gene=cspE;gene_biotype=protein_coding;gene_synonym=gicA,msmC;locus_tag=AD39_RS04710;old_locus_tag=AD39_4119 NZ_JJLH01000050.1 Protein Homology CDS 54715 54927 . + 0 ID=cds-WP_000014594.1;Parent=gene-AD39_RS04710;Dbxref=GenBank:WP_000014594.1;Name=WP_000014594.1;Ontology_term=GO:0031564,GO:0001072,GO:0003697,GO:0003723;gbkey=CDS;gene=cspE;go_function=transcription antitermination factor activity%2C RNA binding|0001072||IEA,single-stranded DNA binding|0003697||IEA,RNA binding|0003723||IEA;go_process=transcription antitermination|0031564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312468.1;locus_tag=AD39_RS04710;product=transcription antiterminator/RNA stability regulator CspE;protein_id=WP_000014594.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 55067 55126 . + . ID=gene-AD39_RS29840;Name=AD39_RS29840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29840 NZ_JJLH01000050.1 Protein Homology CDS 55067 55126 . + 0 ID=cds-WP_212591412.1;Parent=gene-AD39_RS29840;Dbxref=GenBank:WP_212591412.1;Name=WP_212591412.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051206.1;locus_tag=AD39_RS29840;product=hypothetical protein;protein_id=WP_212591412.1;transl_table=11 NZ_JJLH01000050.1 RefSeq gene 55115 55267 . - . ID=gene-AD39_RS04705;Name=hokA;gbkey=Gene;gene=hokA;gene_biotype=protein_coding;locus_tag=AD39_RS04705;old_locus_tag=AD39_4120 NZ_JJLH01000050.1 Protein Homology CDS 55115 55267 . - 0 ID=cds-WP_001135738.1;Parent=gene-AD39_RS04705;Dbxref=GenBank:WP_001135738.1;Name=WP_001135738.1;gbkey=CDS;gene=hokA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012540334.1;locus_tag=AD39_RS04705;product=type I toxin-antitoxin system toxin HokA;protein_id=WP_001135738.1;transl_table=11 NZ_JJLH01000050.1 RefSeq pseudogene 55369 55930 . - . ID=gene-AD39_RS0125445;Name=AD39_RS0125445;end_range=55930,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125445;old_locus_tag=AD39_4121;partial=true;pseudo=true NZ_JJLH01000050.1 Protein Homology CDS 55369 55930 . - 1 ID=cds-AD39_RS0125445;Parent=gene-AD39_RS0125445;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;Ontology_term=GO:0006313,GO:0004803;end_range=55930,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012767703.1;locus_tag=AD39_RS0125445;partial=true;product=IS3-like element IS150 family transposase;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000051.1 1 221145 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000051.1 RefSeq region 1 221145 . + . ID=NZ_JJLH01000051.1:1..221145;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000051.1 RefSeq gene 1 258 . - . ID=gene-AD39_RS04700;Name=AD39_RS04700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS04700;old_locus_tag=AD39_4122;partial=true;start_range=.,1 NZ_JJLH01000051.1 Protein Homology CDS 1 258 . - 0 ID=cds-WP_024181402.1;Parent=gene-AD39_RS04700;Dbxref=GenBank:WP_024181402.1;Name=WP_024181402.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611947.1;locus_tag=AD39_RS04700;partial=true;product=IS3 family transposase;protein_id=WP_024181402.1;start_range=.,1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 559 2628 . - . ID=gene-AD39_RS04695;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=AD39_RS04695;old_locus_tag=AD39_4123 NZ_JJLH01000051.1 Protein Homology CDS 559 2628 . - 0 ID=cds-WP_023140117.1;Parent=gene-AD39_RS04695;Dbxref=GenBank:WP_023140117.1;Name=WP_023140117.1;Ontology_term=GO:0006426,GO:0000166,GO:0004820,GO:0005524,GO:0005737;gbkey=CDS;gene=glyS;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glycine-tRNA ligase activity|0004820||IEA,ATP binding|0005524||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001291772.1;locus_tag=AD39_RS04695;product=glycine--tRNA ligase subunit beta;protein_id=WP_023140117.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 2638 3549 . - . ID=gene-AD39_RS04690;Name=glyQ;gbkey=Gene;gene=glyQ;gene_biotype=protein_coding;locus_tag=AD39_RS04690;old_locus_tag=AD39_4124 NZ_JJLH01000051.1 Protein Homology CDS 2638 3549 . - 0 ID=cds-WP_001168544.1;Parent=gene-AD39_RS04690;Dbxref=GenBank:WP_001168544.1;Name=WP_001168544.1;Ontology_term=GO:0006426,GO:0000166,GO:0004820,GO:0005524,GO:0005737;gbkey=CDS;gene=glyQ;go_component=cytoplasm|0005737||IEA;go_function=nucleotide binding|0000166||IEA,glycine-tRNA ligase activity|0004820||IEA,ATP binding|0005524||IEA;go_process=glycyl-tRNA aminoacylation|0006426||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312470.1;locus_tag=AD39_RS04690;product=glycine--tRNA ligase subunit alpha;protein_id=WP_001168544.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 3644 3943 . - . ID=gene-AD39_RS04685;Name=ysaB;gbkey=Gene;gene=ysaB;gene_biotype=protein_coding;locus_tag=AD39_RS04685;old_locus_tag=AD39_4125 NZ_JJLH01000051.1 Protein Homology CDS 3644 3943 . - 0 ID=cds-WP_000980111.1;Parent=gene-AD39_RS04685;Dbxref=GenBank:WP_000980111.1;Name=WP_000980111.1;gbkey=CDS;gene=ysaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709347.1;locus_tag=AD39_RS04685;product=YsaB family lipoprotein;protein_id=WP_000980111.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 4118 5113 . + . ID=gene-AD39_RS04680;Name=wecH;gbkey=Gene;gene=wecH;gene_biotype=protein_coding;locus_tag=AD39_RS04680;old_locus_tag=AD39_4126 NZ_JJLH01000051.1 Protein Homology CDS 4118 5113 . + 0 ID=cds-WP_001182653.1;Parent=gene-AD39_RS04680;Dbxref=GenBank:WP_001182653.1;Name=WP_001182653.1;gbkey=CDS;gene=wecH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709348.1;locus_tag=AD39_RS04680;product=O-acetyltransferase WecH;protein_id=WP_001182653.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 5155 5592 . - . ID=gene-AD39_RS0125450;Name=yiaA;gbkey=Gene;gene=yiaA;gene_biotype=protein_coding;locus_tag=AD39_RS0125450;old_locus_tag=AD39_4127 NZ_JJLH01000051.1 Protein Homology CDS 5155 5592 . - 0 ID=cds-WP_001296808.1;Parent=gene-AD39_RS0125450;Dbxref=GenBank:WP_001296808.1;Name=WP_001296808.1;gbkey=CDS;gene=yiaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312472.2;locus_tag=AD39_RS0125450;product=inner membrane protein YiaA;protein_id=WP_001296808.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 5638 5979 . - . ID=gene-AD39_RS04675;Name=yiaB;gbkey=Gene;gene=yiaB;gene_biotype=protein_coding;locus_tag=AD39_RS04675;old_locus_tag=AD39_4128 NZ_JJLH01000051.1 Protein Homology CDS 5638 5979 . - 0 ID=cds-WP_000858193.1;Parent=gene-AD39_RS04675;Dbxref=GenBank:WP_000858193.1;Name=WP_000858193.1;gbkey=CDS;gene=yiaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709350.2;locus_tag=AD39_RS04675;product=inner membrane protein YiaB;protein_id=WP_000858193.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 6148 7602 . - . ID=gene-AD39_RS04670;Name=xylB;gbkey=Gene;gene=xylB;gene_biotype=protein_coding;locus_tag=AD39_RS04670;old_locus_tag=AD39_4129 NZ_JJLH01000051.1 Protein Homology CDS 6148 7602 . - 0 ID=cds-WP_001497900.1;Parent=gene-AD39_RS04670;Dbxref=GenBank:WP_001497900.1;Name=WP_001497900.1;Ontology_term=GO:0005997,GO:0004856;gbkey=CDS;gene=xylB;go_function=D-xylulokinase activity|0004856||IEA;go_process=xylulose metabolic process|0005997||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709351.1;locus_tag=AD39_RS04670;product=xylulokinase;protein_id=WP_001497900.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 7674 8996 . - . ID=gene-AD39_RS04665;Name=xylA;gbkey=Gene;gene=xylA;gene_biotype=protein_coding;locus_tag=AD39_RS04665;old_locus_tag=AD39_4130 NZ_JJLH01000051.1 Protein Homology CDS 7674 8996 . - 0 ID=cds-WP_001426367.1;Parent=gene-AD39_RS04665;Dbxref=GenBank:WP_001426367.1;Name=WP_001426367.1;Ontology_term=GO:0042732,GO:0009045;gbkey=CDS;gene=xylA;go_function=xylose isomerase activity|0009045||IEA;go_process=D-xylose metabolic process|0042732||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312475.1;locus_tag=AD39_RS04665;product=xylose isomerase;protein_id=WP_001426367.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 9362 10354 . + . ID=gene-AD39_RS04660;Name=xylF;gbkey=Gene;gene=xylF;gene_biotype=protein_coding;locus_tag=AD39_RS04660;old_locus_tag=AD39_4131 NZ_JJLH01000051.1 Protein Homology CDS 9362 10354 . + 0 ID=cds-WP_001296518.1;Parent=gene-AD39_RS04660;Dbxref=GenBank:WP_001296518.1;Name=WP_001296518.1;Ontology_term=GO:0015753;gbkey=CDS;gene=xylF;go_process=D-xylose transmembrane transport|0015753||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418023.1;locus_tag=AD39_RS04660;product=D-xylose ABC transporter substrate-binding protein;protein_id=WP_001296518.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 10432 11973 . + . ID=gene-AD39_RS04655;Name=xylG;gbkey=Gene;gene=xylG;gene_biotype=protein_coding;locus_tag=AD39_RS04655;old_locus_tag=AD39_4132 NZ_JJLH01000051.1 Protein Homology CDS 10432 11973 . + 0 ID=cds-WP_001146479.1;Parent=gene-AD39_RS04655;Dbxref=GenBank:WP_001146479.1;Name=WP_001146479.1;Ontology_term=GO:0015753,GO:0005524,GO:0015614,GO:0016020;gbkey=CDS;gene=xylG;go_component=membrane|0016020||IEA;go_function=ATP binding|0005524||IEA,ABC-type D-xylose transporter activity|0015614||IEA;go_process=D-xylose transmembrane transport|0015753||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312477.1;locus_tag=AD39_RS04655;product=D-xylose ABC transporter ATP-binding protein;protein_id=WP_001146479.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 11951 13132 . + . ID=gene-AD39_RS04650;Name=xylH;gbkey=Gene;gene=xylH;gene_biotype=protein_coding;locus_tag=AD39_RS04650;old_locus_tag=AD39_4133 NZ_JJLH01000051.1 Protein Homology CDS 11951 13132 . + 0 ID=cds-WP_003879499.1;Parent=gene-AD39_RS04650;Dbxref=GenBank:WP_003879499.1;Name=WP_003879499.1;gbkey=CDS;gene=xylH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312478.1;locus_tag=AD39_RS04650;product=xylose ABC transporter permease XylH;protein_id=WP_003879499.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 13210 14388 . + . ID=gene-AD39_RS04645;Name=xylR;gbkey=Gene;gene=xylR;gene_biotype=protein_coding;locus_tag=AD39_RS04645;old_locus_tag=AD39_4134 NZ_JJLH01000051.1 Protein Homology CDS 13210 14388 . + 0 ID=cds-WP_000494484.1;Parent=gene-AD39_RS04645;Dbxref=GenBank:WP_000494484.1;Name=WP_000494484.1;Note=D-xylose enhances binding of XylR to the xyl promoter and activates transcription.;gbkey=CDS;gene=xylR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312479.1;locus_tag=AD39_RS04645;product=D-xylose utilization transcriptional activator XylR;protein_id=WP_000494484.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 14496 15320 . - . ID=gene-AD39_RS0125455;Name=bax;gbkey=Gene;gene=bax;gene_biotype=protein_coding;locus_tag=AD39_RS0125455;old_locus_tag=AD39_4135 NZ_JJLH01000051.1 Protein Homology CDS 14496 15320 . - 0 ID=cds-WP_032283584.1;Parent=gene-AD39_RS0125455;Dbxref=GenBank:WP_032283584.1;Name=WP_032283584.1;gbkey=CDS;gene=bax;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026230.1;locus_tag=AD39_RS0125455;product=protein bax;protein_id=WP_032283584.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 15640 17670 . + . ID=gene-AD39_RS04640;Name=malS;gbkey=Gene;gene=malS;gene_biotype=protein_coding;locus_tag=AD39_RS04640;old_locus_tag=AD39_4137 NZ_JJLH01000051.1 Protein Homology CDS 15640 17670 . + 0 ID=cds-WP_000761259.1;Parent=gene-AD39_RS04640;Dbxref=GenBank:WP_000761259.1;Name=WP_000761259.1;Ontology_term=GO:0004556;gbkey=CDS;gene=malS;go_function=alpha-amylase activity|0004556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312481.1;locus_tag=AD39_RS04640;product=alpha-amylase;protein_id=WP_000761259.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 17848 19101 . + . ID=gene-AD39_RS04635;Name=avtA;gbkey=Gene;gene=avtA;gene_biotype=protein_coding;locus_tag=AD39_RS04635;old_locus_tag=AD39_4138 NZ_JJLH01000051.1 Protein Homology CDS 17848 19101 . + 0 ID=cds-WP_032287639.1;Parent=gene-AD39_RS04635;Dbxref=GenBank:WP_032287639.1;Name=WP_032287639.1;gbkey=CDS;gene=avtA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312482.1;locus_tag=AD39_RS04635;product=valine--pyruvate transaminase;protein_id=WP_032287639.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 19252 19725 . - . ID=gene-AD39_RS04630;Name=ysaA;gbkey=Gene;gene=ysaA;gene_biotype=protein_coding;locus_tag=AD39_RS04630;old_locus_tag=AD39_4139 NZ_JJLH01000051.1 Protein Homology CDS 19252 19725 . - 0 ID=cds-WP_032251330.1;Parent=gene-AD39_RS04630;Dbxref=GenBank:WP_032251330.1;Name=WP_032251330.1;gbkey=CDS;gene=ysaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312483.1;locus_tag=AD39_RS04630;product=4Fe-4S binding protein;protein_id=WP_032251330.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 19827 20675 . - . ID=gene-AD39_RS04625;Name=yiaJ;gbkey=Gene;gene=yiaJ;gene_biotype=protein_coding;locus_tag=AD39_RS04625;old_locus_tag=AD39_4140 NZ_JJLH01000051.1 Protein Homology CDS 19827 20675 . - 0 ID=cds-WP_000514233.1;Parent=gene-AD39_RS04625;Dbxref=GenBank:WP_000514233.1;Name=WP_000514233.1;gbkey=CDS;gene=yiaJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418031.1;locus_tag=AD39_RS04625;product=IclR family transcriptional regulator YiaJ;protein_id=WP_000514233.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 20876 21874 . + . ID=gene-AD39_RS04620;Name=yiaK;gbkey=Gene;gene=yiaK;gene_biotype=protein_coding;locus_tag=AD39_RS04620;old_locus_tag=AD39_4141 NZ_JJLH01000051.1 Protein Homology CDS 20876 21874 . + 0 ID=cds-WP_000869039.1;Parent=gene-AD39_RS04620;Dbxref=GenBank:WP_000869039.1;Name=WP_000869039.1;Ontology_term=GO:0047559,GO:0070403;gbkey=CDS;gene=yiaK;go_function=3-dehydro-L-gulonate 2-dehydrogenase activity|0047559||IEA,NAD+ binding|0070403||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709360.1;locus_tag=AD39_RS04620;product=3-dehydro-L-gulonate 2-dehydrogenase;protein_id=WP_000869039.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 21886 22353 . + . ID=gene-AD39_RS04615;Name=yiaL;gbkey=Gene;gene=yiaL;gene_biotype=protein_coding;locus_tag=AD39_RS04615;old_locus_tag=AD39_4142 NZ_JJLH01000051.1 Protein Homology CDS 21886 22353 . + 0 ID=cds-WP_000576071.1;Parent=gene-AD39_RS04615;Dbxref=GenBank:WP_000576071.1;Name=WP_000576071.1;gbkey=CDS;gene=yiaL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418033.1;locus_tag=AD39_RS04615;product=YhcH/YjgK/YiaL family protein;protein_id=WP_000576071.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 22471 22944 . + . ID=gene-AD39_RS04610;Name=yiaM;gbkey=Gene;gene=yiaM;gene_biotype=protein_coding;locus_tag=AD39_RS04610;old_locus_tag=AD39_4143 NZ_JJLH01000051.1 Protein Homology CDS 22471 22944 . + 0 ID=cds-WP_000721664.1;Parent=gene-AD39_RS04610;Dbxref=GenBank:WP_000721664.1;Name=WP_000721664.1;Ontology_term=GO:0031317;gbkey=CDS;gene=yiaM;go_component=tripartite ATP-independent periplasmic transporter complex|0031317||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418034.1;locus_tag=AD39_RS04610;product=2%2C3-diketo-L-gulonate TRAP transporter small permease YiaM;protein_id=WP_000721664.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 22947 24224 . + . ID=gene-AD39_RS04605;Name=yiaN;gbkey=Gene;gene=yiaN;gene_biotype=protein_coding;locus_tag=AD39_RS04605;old_locus_tag=AD39_4144 NZ_JJLH01000051.1 Protein Homology CDS 22947 24224 . + 0 ID=cds-WP_000279599.1;Parent=gene-AD39_RS04605;Dbxref=GenBank:WP_000279599.1;Name=WP_000279599.1;Ontology_term=GO:0031317;gbkey=CDS;gene=yiaN;go_component=tripartite ATP-independent periplasmic transporter complex|0031317||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026232.1;locus_tag=AD39_RS04605;product=2%2C3-diketo-L-gulonate TRAP transporter large permease YiaN;protein_id=WP_000279599.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 24237 25223 . + . ID=gene-AD39_RS04600;Name=yiaO;gbkey=Gene;gene=yiaO;gene_biotype=protein_coding;locus_tag=AD39_RS04600;old_locus_tag=AD39_4145 NZ_JJLH01000051.1 Protein Homology CDS 24237 25223 . + 0 ID=cds-WP_000776894.1;Parent=gene-AD39_RS04600;Dbxref=GenBank:WP_000776894.1;Name=WP_000776894.1;gbkey=CDS;gene=yiaO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418036.1;locus_tag=AD39_RS04600;product=2%2C3-diketo-L-gulonate TRAP transporter substrate-binding protein YiaO;protein_id=WP_000776894.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 25227 26723 . + . ID=gene-AD39_RS04595;Name=lyxK;gbkey=Gene;gene=lyxK;gene_biotype=protein_coding;locus_tag=AD39_RS04595;old_locus_tag=AD39_4146 NZ_JJLH01000051.1 Protein Homology CDS 25227 26723 . + 0 ID=cds-WP_032287640.1;Parent=gene-AD39_RS04595;Dbxref=GenBank:WP_032287640.1;Name=WP_032287640.1;gbkey=CDS;gene=lyxK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418037.1;locus_tag=AD39_RS04595;product=L-xylulokinase;protein_id=WP_032287640.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 26720 27382 . + . ID=gene-AD39_RS04590;Name=ulaD;gbkey=Gene;gene=ulaD;gene_biotype=protein_coding;locus_tag=AD39_RS04590;old_locus_tag=AD39_4147 NZ_JJLH01000051.1 Protein Homology CDS 26720 27382 . + 0 ID=cds-WP_000089497.1;Parent=gene-AD39_RS04590;Dbxref=GenBank:WP_000089497.1;Name=WP_000089497.1;gbkey=CDS;gene=ulaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418038.1;locus_tag=AD39_RS04590;product=3-keto-L-gulonate-6-phosphate decarboxylase UlaD;protein_id=WP_000089497.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 27375 28235 . + . ID=gene-AD39_RS04585;Name=sgbU;gbkey=Gene;gene=sgbU;gene_biotype=protein_coding;locus_tag=AD39_RS04585;old_locus_tag=AD39_4148 NZ_JJLH01000051.1 Protein Homology CDS 27375 28235 . + 0 ID=cds-WP_001296811.1;Parent=gene-AD39_RS04585;Dbxref=GenBank:WP_001296811.1;Name=WP_001296811.1;Ontology_term=GO:0005975,GO:0016861;gbkey=CDS;gene=sgbU;go_function=intramolecular oxidoreductase activity%2C interconverting aldoses and ketoses|0016861||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418039.2;locus_tag=AD39_RS04585;product=L-ribulose-5-phosphate 3-epimerase;protein_id=WP_001296811.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 28229 28924 . + . ID=gene-AD39_RS04580;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=AD39_RS04580;old_locus_tag=AD39_4149 NZ_JJLH01000051.1 Protein Homology CDS 28229 28924 . + 0 ID=cds-WP_000893142.1;Parent=gene-AD39_RS04580;Dbxref=GenBank:WP_000893142.1;Name=WP_000893142.1;Ontology_term=GO:0019568,GO:0008270,GO:0008742;gbkey=CDS;gene=araD;go_function=zinc ion binding|0008270||IEA,L-ribulose-phosphate 4-epimerase activity|0008742||IEA;go_process=arabinose catabolic process|0019568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418040.1;locus_tag=AD39_RS04580;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_000893142.1;transl_table=11 NZ_JJLH01000051.1 RefSeq pseudogene 28956 29057 . - . ID=gene-AD39_RS29595;Name=AD39_RS29595;end_range=29057,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29595;partial=true;pseudo=true NZ_JJLH01000051.1 Protein Homology CDS 28956 29057 . - 0 ID=cds-AD39_RS29595;Parent=gene-AD39_RS29595;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=29057,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312484.1;locus_tag=AD39_RS29595;partial=true;product=AraC family transcriptional regulator;pseudo=true;transl_table=11 NZ_JJLH01000051.1 RefSeq pseudogene 29061 29249 . + . ID=gene-AD39_RS29845;Name=AD39_RS29845;end_range=29249,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29845;partial=true;pseudo=true;start_range=.,29061 NZ_JJLH01000051.1 Protein Homology CDS 29061 29249 . + 0 ID=cds-AD39_RS29845;Parent=gene-AD39_RS29845;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=29249,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312486.1;locus_tag=AD39_RS29845;partial=true;product=hypothetical protein;pseudo=true;start_range=.,29061;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 29271 30011 . - . ID=gene-AD39_RS04575;Name=yiaT;gbkey=Gene;gene=yiaT;gene_biotype=protein_coding;locus_tag=AD39_RS04575;old_locus_tag=AD39_4150 NZ_JJLH01000051.1 Protein Homology CDS 29271 30011 . - 0 ID=cds-WP_000906804.1;Parent=gene-AD39_RS04575;Dbxref=GenBank:WP_000906804.1;Name=WP_000906804.1;Ontology_term=GO:0009252,GO:0030674,GO:0009279;gbkey=CDS;gene=yiaT;go_component=cell outer membrane|0009279||IEA;go_function=protein-macromolecule adaptor activity|0030674||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312487.1;locus_tag=AD39_RS04575;product=MipA/OmpV family protein;protein_id=WP_000906804.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 30135 31109 . + . ID=gene-AD39_RS04570;Name=yiaU;gbkey=Gene;gene=yiaU;gene_biotype=protein_coding;locus_tag=AD39_RS04570;old_locus_tag=AD39_4151 NZ_JJLH01000051.1 Protein Homology CDS 30135 31109 . + 0 ID=cds-WP_000164033.1;Parent=gene-AD39_RS04570;Dbxref=GenBank:WP_000164033.1;Name=WP_000164033.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=yiaU;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312488.1;locus_tag=AD39_RS04570;product=LysR family transcriptional regulator;protein_id=WP_000164033.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 31106 32242 . - . ID=gene-AD39_RS04565;Name=yiaV;gbkey=Gene;gene=yiaV;gene_biotype=protein_coding;locus_tag=AD39_RS04565;old_locus_tag=AD39_4152 NZ_JJLH01000051.1 Protein Homology CDS 31106 32242 . - 0 ID=cds-WP_032283589.1;Parent=gene-AD39_RS04565;Dbxref=GenBank:WP_032283589.1;Name=WP_032283589.1;gbkey=CDS;gene=yiaV;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418043.1;locus_tag=AD39_RS04565;product=HlyD family secretion protein;protein_id=WP_032283589.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 32248 32571 . - . ID=gene-AD39_RS04560;Name=yiaW;gbkey=Gene;gene=yiaW;gene_biotype=protein_coding;locus_tag=AD39_RS04560;old_locus_tag=AD39_4153 NZ_JJLH01000051.1 Protein Homology CDS 32248 32571 . - 0 ID=cds-WP_000478195.1;Parent=gene-AD39_RS04560;Dbxref=GenBank:WP_000478195.1;Name=WP_000478195.1;gbkey=CDS;gene=yiaW;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312490.1;locus_tag=AD39_RS04560;product=DUF3302 domain-containing protein;protein_id=WP_000478195.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 32754 32897 . + . ID=gene-AD39_RS29510;Name=AD39_RS29510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29510;old_locus_tag=AD39_4154 NZ_JJLH01000051.1 GeneMarkS-2+ CDS 32754 32897 . + 0 ID=cds-WP_001066081.1;Parent=gene-AD39_RS29510;Dbxref=GenBank:WP_001066081.1;Name=WP_001066081.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS29510;product=hypothetical protein;protein_id=WP_001066081.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 33116 34654 . - . ID=gene-AD39_RS04550;Name=aldB;gbkey=Gene;gene=aldB;gene_biotype=protein_coding;locus_tag=AD39_RS04550;old_locus_tag=AD39_4155 NZ_JJLH01000051.1 Protein Homology CDS 33116 34654 . - 0 ID=cds-WP_000183978.1;Parent=gene-AD39_RS04550;Dbxref=GenBank:WP_000183978.1;Name=WP_000183978.1;gbkey=CDS;gene=aldB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001551836.1;locus_tag=AD39_RS04550;product=aldehyde dehydrogenase AldB;protein_id=WP_000183978.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 34819 35970 . - . ID=gene-AD39_RS04545;Name=yiaY;gbkey=Gene;gene=yiaY;gene_biotype=protein_coding;locus_tag=AD39_RS04545;old_locus_tag=AD39_4156 NZ_JJLH01000051.1 Protein Homology CDS 34819 35970 . - 0 ID=cds-WP_032210201.1;Parent=gene-AD39_RS04545;Dbxref=GenBank:WP_032210201.1;Name=WP_032210201.1;Ontology_term=GO:0016491;gbkey=CDS;gene=yiaY;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312493.1;locus_tag=AD39_RS04545;product=L-threonine dehydrogenase;protein_id=WP_032210201.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 36160 38004 . - . ID=gene-AD39_RS04540;Name=selB;gbkey=Gene;gene=selB;gene_biotype=protein_coding;locus_tag=AD39_RS04540;old_locus_tag=AD39_4157 NZ_JJLH01000051.1 Protein Homology CDS 36160 38004 . - 0 ID=cds-WP_032287641.1;Parent=gene-AD39_RS04540;Dbxref=GenBank:WP_032287641.1;Name=WP_032287641.1;Ontology_term=GO:0001514,GO:0003723,GO:0003746,GO:0003924,GO:0005525,GO:0005737;gbkey=CDS;gene=selB;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,translation elongation factor activity|0003746||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=selenocysteine incorporation|0001514||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418047.1;locus_tag=AD39_RS04540;product=selenocysteine-specific translation elongation factor;protein_id=WP_032287641.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 38001 39392 . - . ID=gene-AD39_RS04535;Name=selA;gbkey=Gene;gene=selA;gene_biotype=protein_coding;locus_tag=AD39_RS04535;old_locus_tag=AD39_4158 NZ_JJLH01000051.1 Protein Homology CDS 38001 39392 . - 0 ID=cds-WP_000206275.1;Parent=gene-AD39_RS04535;Dbxref=GenBank:WP_000206275.1;Name=WP_000206275.1;Ontology_term=GO:0001514,GO:0004125,GO:0005737;gbkey=CDS;gene=selA;go_component=cytoplasm|0005737||IEA;go_function=L-seryl-tRNA(Sec) selenium transferase activity|0004125||IEA;go_process=selenocysteine incorporation|0001514||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312495.1;locus_tag=AD39_RS04535;product=L-seryl-tRNA(Sec) selenium transferase;protein_id=WP_000206275.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 39490 40098 . - . ID=gene-AD39_RS04530;Name=yibF;gbkey=Gene;gene=yibF;gene_biotype=protein_coding;locus_tag=AD39_RS04530;old_locus_tag=AD39_4159 NZ_JJLH01000051.1 Protein Homology CDS 39490 40098 . - 0 ID=cds-WP_000779792.1;Parent=gene-AD39_RS04530;Dbxref=GenBank:WP_000779792.1;Name=WP_000779792.1;Ontology_term=GO:0006749,GO:0005515;gbkey=CDS;gene=yibF;go_function=protein binding|0005515||IEA;go_process=glutathione metabolic process|0006749||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418049.1;locus_tag=AD39_RS04530;product=glutathione S-transferase;protein_id=WP_000779792.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 40169 41305 . - . ID=gene-AD39_RS04525;Name=yibH;gbkey=Gene;gene=yibH;gene_biotype=protein_coding;locus_tag=AD39_RS04525;old_locus_tag=AD39_4160 NZ_JJLH01000051.1 Protein Homology CDS 40169 41305 . - 0 ID=cds-WP_000364939.1;Parent=gene-AD39_RS04525;Dbxref=GenBank:WP_000364939.1;Name=WP_000364939.1;gbkey=CDS;gene=yibH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312500.1;locus_tag=AD39_RS04525;product=HlyD family secretion protein;protein_id=WP_000364939.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 41308 41670 . - . ID=gene-AD39_RS0125465;Name=yibI;gbkey=Gene;gene=yibI;gene_biotype=protein_coding;locus_tag=AD39_RS0125465 NZ_JJLH01000051.1 Protein Homology CDS 41308 41670 . - 0 ID=cds-WP_000479626.1;Parent=gene-AD39_RS0125465;Dbxref=GenBank:WP_000479626.1;Name=WP_000479626.1;gbkey=CDS;gene=yibI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312501.1;locus_tag=AD39_RS0125465;product=DUF3302 domain-containing protein;protein_id=WP_000479626.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 42207 44120 . + . ID=gene-AD39_RS04520;Name=mtlA;gbkey=Gene;gene=mtlA;gene_biotype=protein_coding;locus_tag=AD39_RS04520;old_locus_tag=AD39_4163 NZ_JJLH01000051.1 Protein Homology CDS 42207 44120 . + 0 ID=cds-WP_000093256.1;Parent=gene-AD39_RS04520;Dbxref=GenBank:WP_000093256.1;Name=WP_000093256.1;gbkey=CDS;gene=mtlA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418056.1;locus_tag=AD39_RS04520;product=PTS mannitol transporter subunit IICBA;protein_id=WP_000093256.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 44350 45498 . + . ID=gene-AD39_RS04515;Name=mtlD;gbkey=Gene;gene=mtlD;gene_biotype=protein_coding;locus_tag=AD39_RS04515;old_locus_tag=AD39_4164 NZ_JJLH01000051.1 Protein Homology CDS 44350 45498 . + 0 ID=cds-WP_000645424.1;Parent=gene-AD39_RS04515;Dbxref=GenBank:WP_000645424.1;Name=WP_000645424.1;Ontology_term=GO:0019594,GO:0008926;gbkey=CDS;gene=mtlD;go_function=mannitol-1-phosphate 5-dehydrogenase activity|0008926||IEA;go_process=mannitol metabolic process|0019594||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709374.2;locus_tag=AD39_RS04515;product=mannitol-1-phosphate 5-dehydrogenase;protein_id=WP_000645424.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 45498 46085 . + . ID=gene-AD39_RS04510;Name=mtlR;gbkey=Gene;gene=mtlR;gene_biotype=protein_coding;locus_tag=AD39_RS04510;old_locus_tag=AD39_4165 NZ_JJLH01000051.1 Protein Homology CDS 45498 46085 . + 0 ID=cds-WP_000228271.1;Parent=gene-AD39_RS04510;Dbxref=GenBank:WP_000228271.1;Name=WP_000228271.1;gbkey=CDS;gene=mtlR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312504.1;locus_tag=AD39_RS04510;product=mannitol operon repressor MtlR;protein_id=WP_000228271.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 46097 46306 . - . ID=gene-AD39_RS04505;Name=yibT;gbkey=Gene;gene=yibT;gene_biotype=protein_coding;locus_tag=AD39_RS04505;old_locus_tag=AD39_4166 NZ_JJLH01000051.1 Protein Homology CDS 46097 46306 . - 0 ID=cds-WP_000517100.1;Parent=gene-AD39_RS04505;Dbxref=GenBank:WP_000517100.1;Name=WP_000517100.1;gbkey=CDS;gene=yibT;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588470.1;locus_tag=AD39_RS04505;product=protein YibT;protein_id=WP_000517100.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 46591 46953 . + . ID=gene-AD39_RS04500;Name=yibL;gbkey=Gene;gene=yibL;gene_biotype=protein_coding;locus_tag=AD39_RS04500;old_locus_tag=AD39_4167 NZ_JJLH01000051.1 Protein Homology CDS 46591 46953 . + 0 ID=cds-WP_000665680.1;Parent=gene-AD39_RS04500;Dbxref=GenBank:WP_000665680.1;Name=WP_000665680.1;gbkey=CDS;gene=yibL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312505.1;locus_tag=AD39_RS04500;product=YibL family ribosome-associated protein;protein_id=WP_000665680.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 47497 48180 . + . ID=gene-AD39_RS04495;Name=AD39_RS04495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS04495;old_locus_tag=AD39_4169 NZ_JJLH01000051.1 Protein Homology CDS 47497 48180 . + 0 ID=cds-WP_001049543.1;Parent=gene-AD39_RS04495;Dbxref=GenBank:WP_001049543.1;Name=WP_001049543.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001049551.1;locus_tag=AD39_RS04495;product=DUF3251 domain-containing protein;protein_id=WP_001049543.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 48224 53074 . + . ID=gene-AD39_RS04490;Name=ehaG;gbkey=Gene;gene=ehaG;gene_biotype=protein_coding;locus_tag=AD39_RS04490;old_locus_tag=AD39_4170 NZ_JJLH01000051.1 Protein Homology CDS 48224 53074 . + 0 ID=cds-WP_032283592.1;Parent=gene-AD39_RS04490;Dbxref=GenBank:WP_032283592.1;Name=WP_032283592.1;gbkey=CDS;gene=ehaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312507.1;locus_tag=AD39_RS04490;product=trimeric autotransporter adhesin EhaG;protein_id=WP_032283592.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 53443 55098 . + . ID=gene-AD39_RS04485;Name=lldP;gbkey=Gene;gene=lldP;gene_biotype=protein_coding;locus_tag=AD39_RS04485;old_locus_tag=AD39_4171 NZ_JJLH01000051.1 Protein Homology CDS 53443 55098 . + 0 ID=cds-WP_001297977.1;Parent=gene-AD39_RS04485;Dbxref=GenBank:WP_001297977.1;Name=WP_001297977.1;Ontology_term=GO:0015727,GO:0015129,GO:0005886;gbkey=CDS;gene=lldP;go_component=plasma membrane|0005886||IEA;go_function=lactate transmembrane transporter activity|0015129||IEA;go_process=lactate transport|0015727||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312508.1;locus_tag=AD39_RS04485;product=L-lactate permease;protein_id=WP_001297977.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 55098 55874 . + . ID=gene-AD39_RS04480;Name=lldR;gbkey=Gene;gene=lldR;gene_biotype=protein_coding;locus_tag=AD39_RS04480;old_locus_tag=AD39_4172 NZ_JJLH01000051.1 Protein Homology CDS 55098 55874 . + 0 ID=cds-WP_001297449.1;Parent=gene-AD39_RS04480;Dbxref=GenBank:WP_001297449.1;Name=WP_001297449.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=lldR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418061.1;locus_tag=AD39_RS04480;product=transcriptional regulator LldR;protein_id=WP_001297449.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 55871 57061 . + . ID=gene-AD39_RS04475;Name=lldD;gbkey=Gene;gene=lldD;gene_biotype=protein_coding;locus_tag=AD39_RS04475;old_locus_tag=AD39_4173 NZ_JJLH01000051.1 Protein Homology CDS 55871 57061 . + 0 ID=cds-WP_000586964.1;Parent=gene-AD39_RS04475;Dbxref=GenBank:WP_000586964.1;Name=WP_000586964.1;gbkey=CDS;gene=lldD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312510.1;locus_tag=AD39_RS04475;product=quinone-dependent L-lactate dehydrogenase;protein_id=WP_000586964.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 57247 57720 . + . ID=gene-AD39_RS04470;Name=trmL;gbkey=Gene;gene=trmL;gene_biotype=protein_coding;locus_tag=AD39_RS04470;old_locus_tag=AD39_4174 NZ_JJLH01000051.1 Protein Homology CDS 57247 57720 . + 0 ID=cds-WP_000932342.1;Parent=gene-AD39_RS04470;Dbxref=GenBank:WP_000932342.1;Name=WP_000932342.1;Ontology_term=GO:0001510,GO:0008173;gbkey=CDS;gene=trmL;go_function=RNA methyltransferase activity|0008173||IEA;go_process=RNA methylation|0001510||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312511.1;locus_tag=AD39_RS04470;product=tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL;protein_id=WP_000932342.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 57773 58594 . - . ID=gene-AD39_RS04465;Name=cysE;gbkey=Gene;gene=cysE;gene_biotype=protein_coding;locus_tag=AD39_RS04465;old_locus_tag=AD39_4175 NZ_JJLH01000051.1 Protein Homology CDS 57773 58594 . - 0 ID=cds-WP_001277561.1;Parent=gene-AD39_RS04465;Dbxref=GenBank:WP_001277561.1;Name=WP_001277561.1;Ontology_term=GO:0006535,GO:0009001;gbkey=CDS;gene=cysE;go_function=serine O-acetyltransferase activity|0009001||IEA;go_process=cysteine biosynthetic process from serine|0006535||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001112113.1;locus_tag=AD39_RS04465;product=serine O-acetyltransferase;protein_id=WP_001277561.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 58674 59693 . - . ID=gene-AD39_RS04460;Name=gpsA;gbkey=Gene;gene=gpsA;gene_biotype=protein_coding;locus_tag=AD39_RS04460;old_locus_tag=AD39_4176 NZ_JJLH01000051.1 Protein Homology CDS 58674 59693 . - 0 ID=cds-WP_001076194.1;Parent=gene-AD39_RS04460;Dbxref=GenBank:WP_001076194.1;Name=WP_001076194.1;Ontology_term=GO:0006072,GO:0047952;gbkey=CDS;gene=gpsA;go_function=glycerol-3-phosphate dehydrogenase [NAD(P)+] activity|0047952||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312513.1;locus_tag=AD39_RS04460;product=NAD(P)H-dependent glycerol-3-phosphate dehydrogenase;protein_id=WP_001076194.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 59693 60160 . - . ID=gene-AD39_RS04455;Name=secB;gbkey=Gene;gene=secB;gene_biotype=protein_coding;locus_tag=AD39_RS04455;old_locus_tag=AD39_4177 NZ_JJLH01000051.1 Protein Homology CDS 59693 60160 . - 0 ID=cds-WP_000003377.1;Parent=gene-AD39_RS04455;Dbxref=GenBank:WP_000003377.1;Name=WP_000003377.1;gbkey=CDS;gene=secB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015369180.1;locus_tag=AD39_RS04455;product=protein-export chaperone SecB;protein_id=WP_000003377.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 60223 60474 . - . ID=gene-AD39_RS04450;Name=grxC;gbkey=Gene;gene=grxC;gene_biotype=protein_coding;locus_tag=AD39_RS04450;old_locus_tag=AD39_4178 NZ_JJLH01000051.1 Protein Homology CDS 60223 60474 . - 0 ID=cds-WP_000024392.1;Parent=gene-AD39_RS04450;Dbxref=GenBank:WP_000024392.1;Name=WP_000024392.1;gbkey=CDS;gene=grxC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312515.1;locus_tag=AD39_RS04450;product=glutaredoxin 3;protein_id=WP_000024392.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 60616 61047 . - . ID=gene-AD39_RS04445;Name=yibN;gbkey=Gene;gene=yibN;gene_biotype=protein_coding;locus_tag=AD39_RS04445;old_locus_tag=AD39_4179 NZ_JJLH01000051.1 Protein Homology CDS 60616 61047 . - 0 ID=cds-WP_001156181.1;Parent=gene-AD39_RS04445;Dbxref=GenBank:WP_001156181.1;Name=WP_001156181.1;gbkey=CDS;gene=yibN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312516.1;locus_tag=AD39_RS04445;product=rhodanese-like domain-containing protein;protein_id=WP_001156181.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 61292 62836 . + . ID=gene-AD39_RS04440;Name=gpmM;gbkey=Gene;gene=gpmM;gene_biotype=protein_coding;gene_synonym=pgmI;locus_tag=AD39_RS04440;old_locus_tag=AD39_4180 NZ_JJLH01000051.1 Protein Homology CDS 61292 62836 . + 0 ID=cds-WP_000116565.1;Parent=gene-AD39_RS04440;Dbxref=GenBank:WP_000116565.1;Name=WP_000116565.1;Ontology_term=GO:0006007,GO:0004619;gbkey=CDS;gene=gpmM;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glucose catabolic process|0006007||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312517.1;locus_tag=AD39_RS04440;product=2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase;protein_id=WP_000116565.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 62870 64129 . + . ID=gene-AD39_RS04435;Name=envC;gbkey=Gene;gene=envC;gene_biotype=protein_coding;locus_tag=AD39_RS04435;old_locus_tag=AD39_4181 NZ_JJLH01000051.1 Protein Homology CDS 62870 64129 . + 0 ID=cds-WP_000196256.1;Parent=gene-AD39_RS04435;Dbxref=GenBank:WP_000196256.1;Name=WP_000196256.1;gbkey=CDS;gene=envC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418070.6;locus_tag=AD39_RS04435;product=murein hydrolase activator EnvC;protein_id=WP_000196256.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 64133 65092 . + . ID=gene-AD39_RS04430;Name=yibQ;gbkey=Gene;gene=yibQ;gene_biotype=protein_coding;locus_tag=AD39_RS04430;old_locus_tag=AD39_4182 NZ_JJLH01000051.1 Protein Homology CDS 64133 65092 . + 0 ID=cds-WP_032287643.1;Parent=gene-AD39_RS04430;Dbxref=GenBank:WP_032287643.1;Name=WP_032287643.1;Ontology_term=GO:0005975,GO:0016810;gbkey=CDS;gene=yibQ;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312519.2;locus_tag=AD39_RS04430;product=divergent polysaccharide deacetylase family protein;protein_id=WP_032287643.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 65079 66113 . - . ID=gene-AD39_RS04425;Name=waaH;gbkey=Gene;gene=waaH;gene_biotype=protein_coding;locus_tag=AD39_RS04425;old_locus_tag=AD39_4183 NZ_JJLH01000051.1 Protein Homology CDS 65079 66113 . - 0 ID=cds-WP_032283596.1;Parent=gene-AD39_RS04425;Dbxref=GenBank:WP_032283596.1;Name=WP_032283596.1;gbkey=CDS;gene=waaH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418072.1;locus_tag=AD39_RS04425;product=UDP-glucuronate:LPS(HepIII) glycosyltransferase;protein_id=WP_032283596.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 66352 67377 . - . ID=gene-AD39_RS04420;Name=tdh;gbkey=Gene;gene=tdh;gene_biotype=protein_coding;locus_tag=AD39_RS04420;old_locus_tag=AD39_4184 NZ_JJLH01000051.1 Protein Homology CDS 66352 67377 . - 0 ID=cds-WP_000646014.1;Parent=gene-AD39_RS04420;Dbxref=GenBank:WP_000646014.1;Name=WP_000646014.1;Ontology_term=GO:0006567,GO:0008743;gbkey=CDS;gene=tdh;go_function=L-threonine 3-dehydrogenase activity|0008743||IEA;go_process=threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120462.1;locus_tag=AD39_RS04420;product=L-threonine 3-dehydrogenase;protein_id=WP_000646014.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 67387 68583 . - . ID=gene-AD39_RS04415;Name=kbl;gbkey=Gene;gene=kbl;gene_biotype=protein_coding;locus_tag=AD39_RS04415;old_locus_tag=AD39_4185 NZ_JJLH01000051.1 Protein Homology CDS 67387 68583 . - 0 ID=cds-WP_001213855.1;Parent=gene-AD39_RS04415;Dbxref=GenBank:WP_001213855.1;Name=WP_001213855.1;Ontology_term=GO:0006567,GO:0008890;gbkey=CDS;gene=kbl;go_function=glycine C-acetyltransferase activity|0008890||IEA;go_process=threonine catabolic process|0006567||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020239151.1;locus_tag=AD39_RS04415;product=glycine C-acetyltransferase;protein_id=WP_001213855.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 68858 69715 . - . ID=gene-AD39_RS04410;Name=yibB;gbkey=Gene;gene=yibB;gene_biotype=protein_coding;locus_tag=AD39_RS04410;old_locus_tag=AD39_4186 NZ_JJLH01000051.1 Protein Homology CDS 68858 69715 . - 0 ID=cds-WP_001402638.1;Parent=gene-AD39_RS04410;Dbxref=GenBank:WP_001402638.1;Name=WP_001402638.1;gbkey=CDS;gene=yibB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418075.2;locus_tag=AD39_RS04410;product=protein YibB;protein_id=WP_001402638.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 70019 70951 . + . ID=gene-AD39_RS04405;Name=rfaD;gbkey=Gene;gene=rfaD;gene_biotype=protein_coding;locus_tag=AD39_RS04405;old_locus_tag=AD39_4187 NZ_JJLH01000051.1 Protein Homology CDS 70019 70951 . + 0 ID=cds-WP_001611075.1;Parent=gene-AD39_RS04405;Dbxref=GenBank:WP_001611075.1;Name=WP_001611075.1;Ontology_term=GO:0005975,GO:0008712;gbkey=CDS;gene=rfaD;go_function=ADP-glyceromanno-heptose 6-epimerase activity|0008712||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020233050.1;locus_tag=AD39_RS04405;product=ADP-glyceromanno-heptose 6-epimerase;protein_id=WP_001611075.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 70961 72007 . + . ID=gene-AD39_RS04400;Name=rfaF;gbkey=Gene;gene=rfaF;gene_biotype=protein_coding;locus_tag=AD39_RS04400;old_locus_tag=AD39_4188 NZ_JJLH01000051.1 Protein Homology CDS 70961 72007 . + 0 ID=cds-WP_000699244.1;Parent=gene-AD39_RS04400;Dbxref=GenBank:WP_000699244.1;Name=WP_000699244.1;Ontology_term=GO:0009103,GO:0016757;gbkey=CDS;gene=rfaF;go_function=glycosyltransferase activity|0016757||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001685669.1;locus_tag=AD39_RS04400;product=ADP-heptose--LPS heptosyltransferase RfaF;protein_id=WP_000699244.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 72011 72982 . + . ID=gene-AD39_RS04395;Name=rfaC;gbkey=Gene;gene=rfaC;gene_biotype=protein_coding;locus_tag=AD39_RS04395;old_locus_tag=AD39_4189 NZ_JJLH01000051.1 Protein Homology CDS 72011 72982 . + 0 ID=cds-WP_001264572.1;Parent=gene-AD39_RS04395;Dbxref=GenBank:WP_001264572.1;Name=WP_001264572.1;Ontology_term=GO:0009244,GO:0008920;gbkey=CDS;gene=rfaC;go_function=lipopolysaccharide heptosyltransferase activity|0008920||IEA;go_process=lipopolysaccharide core region biosynthetic process|0009244||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016244006.1;locus_tag=AD39_RS04395;product=lipopolysaccharide heptosyltransferase RfaC;protein_id=WP_001264572.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 73052 74305 . - . ID=gene-AD39_RS04390;Name=AD39_RS04390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS04390;old_locus_tag=AD39_4190 NZ_JJLH01000051.1 Protein Homology CDS 73052 74305 . - 0 ID=cds-WP_001315905.1;Parent=gene-AD39_RS04390;Dbxref=GenBank:WP_001315905.1;Name=WP_001315905.1;Ontology_term=GO:0009103,GO:0008754,GO:0008755,GO:0005886;gbkey=CDS;go_component=plasma membrane|0005886||IEA;go_function=O-antigen ligase activity|0008754||IEA,O antigen polymerase activity|0008755||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012602581.1;locus_tag=AD39_RS04390;product=O-antigen ligase family protein;protein_id=WP_001315905.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 74351 75334 . - . ID=gene-AD39_RS04385;Name=AD39_RS04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS04385;old_locus_tag=AD39_4191 NZ_JJLH01000051.1 Protein Homology CDS 74351 75334 . - 0 ID=cds-WP_000064012.1;Parent=gene-AD39_RS04385;Dbxref=GenBank:WP_000064012.1;Name=WP_000064012.1;Ontology_term=GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016246416.1;locus_tag=AD39_RS04385;product=glycosyltransferase family 2 protein;protein_id=WP_000064012.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 75419 76444 . - . ID=gene-AD39_RS04380;Name=AD39_RS04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS04380;old_locus_tag=AD39_4192 NZ_JJLH01000051.1 Protein Homology CDS 75419 76444 . - 0 ID=cds-WP_000364782.1;Parent=gene-AD39_RS04380;Dbxref=GenBank:WP_000364782.1;Name=WP_000364782.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000364797.1;locus_tag=AD39_RS04380;product=UDP-galactose--(galactosyl) LPS alpha1%2C2-galactosyltransferase;protein_id=WP_000364782.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 76470 77162 . - . ID=gene-AD39_RS04375;Name=rfaY;gbkey=Gene;gene=rfaY;gene_biotype=protein_coding;locus_tag=AD39_RS04375;old_locus_tag=AD39_4193 NZ_JJLH01000051.1 Protein Homology CDS 76470 77162 . - 0 ID=cds-WP_000633091.1;Parent=gene-AD39_RS04375;Dbxref=GenBank:WP_000633091.1;Name=WP_000633091.1;gbkey=CDS;gene=rfaY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000633080.1;locus_tag=AD39_RS04375;product=lipopolysaccharide core heptose(II) kinase RfaY;protein_id=WP_000633091.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 77172 78167 . - . ID=gene-AD39_RS04370;Name=AD39_RS04370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS04370;old_locus_tag=AD39_4194 NZ_JJLH01000051.1 Protein Homology CDS 77172 78167 . - 0 ID=cds-WP_001001720.1;Parent=gene-AD39_RS04370;Dbxref=GenBank:WP_001001720.1;Name=WP_001001720.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001001722.1;locus_tag=AD39_RS04370;product=glycosyltransferase family 8 protein;protein_id=WP_001001720.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 78184 79200 . - . ID=gene-AD39_RS04365;Name=waaO;gbkey=Gene;gene=waaO;gene_biotype=protein_coding;gene_synonym=rfaI;locus_tag=AD39_RS04365;old_locus_tag=AD39_4195 NZ_JJLH01000051.1 Protein Homology CDS 78184 79200 . - 0 ID=cds-WP_001272734.1;Parent=gene-AD39_RS04365;Dbxref=GenBank:WP_001272734.1;Name=WP_001272734.1;Ontology_term=GO:0009103,GO:0008918;gbkey=CDS;gene=waaO;go_function=lipopolysaccharide 3-alpha-galactosyltransferase activity|0008918||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001540083.1;locus_tag=AD39_RS04365;product=lipopolysaccharide 3-alpha-galactosyltransferase;protein_id=WP_001272734.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 79216 80013 . - . ID=gene-AD39_RS04360;Name=rfaP;gbkey=Gene;gene=rfaP;gene_biotype=protein_coding;locus_tag=AD39_RS04360;old_locus_tag=AD39_4196 NZ_JJLH01000051.1 Protein Homology CDS 79216 80013 . - 0 ID=cds-WP_001315906.1;Parent=gene-AD39_RS04360;Dbxref=GenBank:WP_001315906.1;Name=WP_001315906.1;Ontology_term=GO:0009103,GO:0016301;gbkey=CDS;gene=rfaP;go_function=kinase activity|0016301||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312532.2;locus_tag=AD39_RS04360;product=lipopolysaccharide core heptose(I) kinase RfaP;protein_id=WP_001315906.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 80006 81130 . - . ID=gene-AD39_RS04355;Name=waaG;gbkey=Gene;gene=waaG;gene_biotype=protein_coding;locus_tag=AD39_RS04355;old_locus_tag=AD39_4197 NZ_JJLH01000051.1 Protein Homology CDS 80006 81130 . - 0 ID=cds-WP_000634246.1;Parent=gene-AD39_RS04355;Dbxref=GenBank:WP_000634246.1;Name=WP_000634246.1;Ontology_term=GO:0006486,GO:0016757;gbkey=CDS;gene=waaG;go_function=glycosyltransferase activity|0016757||IEA;go_process=protein glycosylation|0006486||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312533.1;locus_tag=AD39_RS04355;product=glycosyltransferase family 4 protein;protein_id=WP_000634246.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 81127 82185 . - . ID=gene-AD39_RS04350;Name=rfaQ;gbkey=Gene;gene=rfaQ;gene_biotype=protein_coding;locus_tag=AD39_RS04350;old_locus_tag=AD39_4198 NZ_JJLH01000051.1 Protein Homology CDS 81127 82185 . - 0 ID=cds-WP_000360402.1;Parent=gene-AD39_RS04350;Dbxref=GenBank:WP_000360402.1;Name=WP_000360402.1;Ontology_term=GO:0016757;gbkey=CDS;gene=rfaQ;go_function=glycosyltransferase activity|0016757||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709409.1;locus_tag=AD39_RS04350;product=lipopolysaccharide core heptosyltransferase RfaQ;protein_id=WP_000360402.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 82598 83875 . + . ID=gene-AD39_RS04345;Name=waaA;gbkey=Gene;gene=waaA;gene_biotype=protein_coding;locus_tag=AD39_RS04345;old_locus_tag=AD39_4199 NZ_JJLH01000051.1 Protein Homology CDS 82598 83875 . + 0 ID=cds-WP_000891564.1;Parent=gene-AD39_RS04345;Dbxref=GenBank:WP_000891564.1;Name=WP_000891564.1;Ontology_term=GO:0016740;gbkey=CDS;gene=waaA;go_function=transferase activity|0016740||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312535.1;locus_tag=AD39_RS04345;product=lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase;protein_id=WP_000891564.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 83883 84362 . + . ID=gene-AD39_RS04340;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;locus_tag=AD39_RS04340;old_locus_tag=AD39_4200 NZ_JJLH01000051.1 Protein Homology CDS 83883 84362 . + 0 ID=cds-WP_001171866.1;Parent=gene-AD39_RS04340;Dbxref=GenBank:WP_001171866.1;Name=WP_001171866.1;Ontology_term=GO:0015937,GO:0004595;gbkey=CDS;gene=coaD;go_function=pantetheine-phosphate adenylyltransferase activity|0004595||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312536.1;locus_tag=AD39_RS04340;product=pantetheine-phosphate adenylyltransferase;protein_id=WP_001171866.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 84401 85210 . - . ID=gene-AD39_RS04335;Name=mutM;gbkey=Gene;gene=mutM;gene_biotype=protein_coding;locus_tag=AD39_RS04335;old_locus_tag=AD39_4201 NZ_JJLH01000051.1 Protein Homology CDS 84401 85210 . - 0 ID=cds-WP_001114533.1;Parent=gene-AD39_RS04335;Dbxref=GenBank:WP_001114533.1;Name=WP_001114533.1;Ontology_term=GO:0006281,GO:0006284,GO:0003676,GO:0003684,GO:0003906,GO:0008270,GO:0008534,GO:0016799,GO:0019104;gbkey=CDS;gene=mutM;go_function=nucleic acid binding|0003676||IEA,damaged DNA binding|0003684||IEA,DNA-(apurinic or apyrimidinic site) endonuclease activity|0003906||IEA,zinc ion binding|0008270||IEA,oxidized purine nucleobase lesion DNA N-glycosylase activity|0008534||IEA,hydrolase activity%2C hydrolyzing N-glycosyl compounds|0016799||IEA,DNA N-glycosylase activity|0019104||IEA;go_process=DNA repair|0006281||IEA,base-excision repair|0006284||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312537.1;locus_tag=AD39_RS04335;product=bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase;protein_id=WP_001114533.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 85308 85475 . - . ID=gene-AD39_RS04330;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=AD39_RS04330;old_locus_tag=AD39_4202 NZ_JJLH01000051.1 Protein Homology CDS 85308 85475 . - 0 ID=cds-WP_001051798.1;Parent=gene-AD39_RS04330;Dbxref=GenBank:WP_001051798.1;Name=WP_001051798.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmG;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010847629.1;locus_tag=AD39_RS04330;product=50S ribosomal protein L33;protein_id=WP_001051798.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 85496 85732 . - . ID=gene-AD39_RS04325;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=AD39_RS04325;old_locus_tag=AD39_4203 NZ_JJLH01000051.1 Protein Homology CDS 85496 85732 . - 0 ID=cds-WP_000091955.1;Parent=gene-AD39_RS04325;Dbxref=GenBank:WP_000091955.1;Name=WP_000091955.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmB;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008457442.1;locus_tag=AD39_RS04325;product=50S ribosomal protein L28;protein_id=WP_000091955.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 85949 86617 . - . ID=gene-AD39_RS04320;Name=radC;gbkey=Gene;gene=radC;gene_biotype=protein_coding;locus_tag=AD39_RS04320;old_locus_tag=AD39_4204 NZ_JJLH01000051.1 Protein Homology CDS 85949 86617 . - 0 ID=cds-WP_001399506.1;Parent=gene-AD39_RS04320;Dbxref=GenBank:WP_001399506.1;Name=WP_001399506.1;gbkey=CDS;gene=radC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418095.4;locus_tag=AD39_RS04320;product=RadC family protein;protein_id=WP_001399506.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 86789 88009 . + . ID=gene-AD39_RS04315;Name=coaBC;gbkey=Gene;gene=coaBC;gene_biotype=protein_coding;locus_tag=AD39_RS04315;old_locus_tag=AD39_4205 NZ_JJLH01000051.1 Protein Homology CDS 86789 88009 . + 0 ID=cds-WP_000050139.1;Parent=gene-AD39_RS04315;Dbxref=GenBank:WP_000050139.1;Name=WP_000050139.1;Ontology_term=GO:0015937,GO:0015941,GO:0004632,GO:0004633,GO:0010181;gbkey=CDS;gene=coaBC;go_function=phosphopantothenate--cysteine ligase activity|0004632||IEA,phosphopantothenoylcysteine decarboxylase activity|0004633||IEA,FMN binding|0010181||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA,pantothenate catabolic process|0015941||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418096.4;locus_tag=AD39_RS04315;product=bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC;protein_id=WP_000050139.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 87987 88445 . + . ID=gene-AD39_RS04310;Name=dut;gbkey=Gene;gene=dut;gene_biotype=protein_coding;locus_tag=AD39_RS04310;old_locus_tag=AD39_4206 NZ_JJLH01000051.1 Protein Homology CDS 87987 88445 . + 0 ID=cds-WP_000976070.1;Parent=gene-AD39_RS04310;Dbxref=GenBank:WP_000976070.1;Name=WP_000976070.1;Ontology_term=GO:0006226,GO:0046081,GO:0000287,GO:0004170;gbkey=CDS;gene=dut;go_function=magnesium ion binding|0000287||IEA,dUTP diphosphatase activity|0004170||IEA;go_process=dUMP biosynthetic process|0006226||IEA,dUTP catabolic process|0046081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000976070.1;locus_tag=AD39_RS04310;product=dUTP diphosphatase;protein_id=WP_000976070.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 88552 89148 . + . ID=gene-AD39_RS04305;Name=slmA;gbkey=Gene;gene=slmA;gene_biotype=protein_coding;locus_tag=AD39_RS04305;old_locus_tag=AD39_4207 NZ_JJLH01000051.1 Protein Homology CDS 88552 89148 . + 0 ID=cds-WP_000818601.1;Parent=gene-AD39_RS04305;Dbxref=GenBank:WP_000818601.1;Name=WP_000818601.1;Ontology_term=GO:0010974,GO:0003677;gbkey=CDS;gene=slmA;go_function=DNA binding|0003677||IEA;go_process=negative regulation of division septum assembly|0010974||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000818604.1;locus_tag=AD39_RS04305;product=nucleoid occlusion factor SlmA;protein_id=WP_000818601.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 89185 89826 . - . ID=gene-AD39_RS04300;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=AD39_RS04300;old_locus_tag=AD39_4208 NZ_JJLH01000051.1 Protein Homology CDS 89185 89826 . - 0 ID=cds-WP_000806161.1;Parent=gene-AD39_RS04300;Dbxref=GenBank:WP_000806161.1;Name=WP_000806161.1;Ontology_term=GO:0009220,GO:0004588;gbkey=CDS;gene=pyrE;go_function=orotate phosphoribosyltransferase activity|0004588||IEA;go_process=pyrimidine ribonucleotide biosynthetic process|0009220||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312544.1;locus_tag=AD39_RS04300;product=orotate phosphoribosyltransferase;protein_id=WP_000806161.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 89892 90608 . - . ID=gene-AD39_RS04295;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=AD39_RS04295;old_locus_tag=AD39_4209 NZ_JJLH01000051.1 Protein Homology CDS 89892 90608 . - 0 ID=cds-WP_001247093.1;Parent=gene-AD39_RS04295;Dbxref=GenBank:WP_001247093.1;Name=WP_001247093.1;Ontology_term=GO:0008033,GO:0000049,GO:0009022;gbkey=CDS;gene=rph;go_function=tRNA binding|0000049||IEA,tRNA nucleotidyltransferase activity|0009022||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006803115.1;locus_tag=AD39_RS04295;product=ribonuclease PH;protein_id=WP_001247093.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 90735 91598 . + . ID=gene-AD39_RS04290;Name=yicC;gbkey=Gene;gene=yicC;gene_biotype=protein_coding;locus_tag=AD39_RS04290;old_locus_tag=AD39_4210 NZ_JJLH01000051.1 Protein Homology CDS 90735 91598 . + 0 ID=cds-WP_000621336.1;Parent=gene-AD39_RS04290;Dbxref=GenBank:WP_000621336.1;Name=WP_000621336.1;Ontology_term=GO:0016788;gbkey=CDS;gene=yicC;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122606.1;locus_tag=AD39_RS04290;product=YicC/YloC family endoribonuclease;protein_id=WP_000621336.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 91819 92643 . + . ID=gene-AD39_RS04285;Name=dinD;gbkey=Gene;gene=dinD;gene_biotype=protein_coding;locus_tag=AD39_RS04285;old_locus_tag=AD39_4212 NZ_JJLH01000051.1 Protein Homology CDS 91819 92643 . + 0 ID=cds-WP_001367933.1;Parent=gene-AD39_RS04285;Dbxref=GenBank:WP_001367933.1;Name=WP_001367933.1;gbkey=CDS;gene=dinD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312547.2;locus_tag=AD39_RS04285;product=DNA damage-inducible protein D;protein_id=WP_001367933.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 92935 93552 . + . ID=gene-AD39_RS04280;Name=yicG;gbkey=Gene;gene=yicG;gene_biotype=protein_coding;locus_tag=AD39_RS04280;old_locus_tag=AD39_4213 NZ_JJLH01000051.1 Protein Homology CDS 92935 93552 . + 0 ID=cds-WP_000924289.1;Parent=gene-AD39_RS04280;Dbxref=GenBank:WP_000924289.1;Name=WP_000924289.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yicG;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312548.2;locus_tag=AD39_RS04280;product=trimeric intracellular cation channel family protein;protein_id=WP_000924289.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 93549 95231 . - . ID=gene-AD39_RS04275;Name=ligB;gbkey=Gene;gene=ligB;gene_biotype=protein_coding;locus_tag=AD39_RS04275;old_locus_tag=AD39_4214 NZ_JJLH01000051.1 Protein Homology CDS 93549 95231 . - 0 ID=cds-WP_032287644.1;Parent=gene-AD39_RS04275;Dbxref=GenBank:WP_032287644.1;Name=WP_032287644.1;Ontology_term=GO:0006260,GO:0006281,GO:0003911;gbkey=CDS;gene=ligB;go_function=DNA ligase (NAD+) activity|0003911||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312549.2;locus_tag=AD39_RS04275;product=NAD-dependent DNA ligase LigB;protein_id=WP_032287644.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 95489 96112 . + . ID=gene-AD39_RS04270;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;locus_tag=AD39_RS04270;old_locus_tag=AD39_4215 NZ_JJLH01000051.1 Protein Homology CDS 95489 96112 . + 0 ID=cds-WP_001295237.1;Parent=gene-AD39_RS04270;Dbxref=GenBank:WP_001295237.1;Name=WP_001295237.1;Ontology_term=GO:0006163,GO:0004385;gbkey=CDS;gene=gmk;go_function=guanylate kinase activity|0004385||IEA;go_process=purine nucleotide metabolic process|0006163||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000046969.1;locus_tag=AD39_RS04270;product=guanylate kinase;protein_id=WP_001295237.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 96167 96442 . + . ID=gene-AD39_RS04265;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=AD39_RS04265;old_locus_tag=AD39_4216 NZ_JJLH01000051.1 Protein Homology CDS 96167 96442 . + 0 ID=cds-WP_000135058.1;Parent=gene-AD39_RS04265;Dbxref=GenBank:WP_000135058.1;Name=WP_000135058.1;Ontology_term=GO:0006351,GO:0003899;gbkey=CDS;gene=rpoZ;go_function=DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013511051.1;locus_tag=AD39_RS04265;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_000135058.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 96461 98569 . + . ID=gene-AD39_RS04260;Name=spoT;gbkey=Gene;gene=spoT;gene_biotype=protein_coding;locus_tag=AD39_RS04260;old_locus_tag=AD39_4217 NZ_JJLH01000051.1 Protein Homology CDS 96461 98569 . + 0 ID=cds-WP_000280488.1;Parent=gene-AD39_RS04260;Dbxref=GenBank:WP_000280488.1;Name=WP_000280488.1;Ontology_term=GO:0015969,GO:0008728,GO:0008893;gbkey=CDS;gene=spoT;go_function=GTP diphosphokinase activity|0008728||IEA,guanosine-3'%2C5'-bis(diphosphate) 3'-diphosphatase activity|0008893||IEA;go_process=guanosine tetraphosphate metabolic process|0015969||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312552.1;locus_tag=AD39_RS04260;product=bifunctional GTP diphosphokinase/guanosine-3'%2C5'-bis pyrophosphate 3'-pyrophosphohydrolase;protein_id=WP_000280488.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 98576 99265 . + . ID=gene-AD39_RS04255;Name=trmH;gbkey=Gene;gene=trmH;gene_biotype=protein_coding;locus_tag=AD39_RS04255;old_locus_tag=AD39_4218 NZ_JJLH01000051.1 Protein Homology CDS 98576 99265 . + 0 ID=cds-WP_001070190.1;Parent=gene-AD39_RS04255;Dbxref=GenBank:WP_001070190.1;Name=WP_001070190.1;Ontology_term=GO:0030488,GO:0141100;gbkey=CDS;gene=trmH;go_function=tRNA (guanine(18)-2'-O)-methyltransferase activity|0141100||IEA;go_process=tRNA methylation|0030488||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418108.1;locus_tag=AD39_RS04255;product=tRNA (guanosine(18)-2'-O)-methyltransferase TrmH;protein_id=WP_001070190.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 99271 101352 . + . ID=gene-AD39_RS04250;Name=recG;gbkey=Gene;gene=recG;gene_biotype=protein_coding;locus_tag=AD39_RS04250;old_locus_tag=AD39_4219 NZ_JJLH01000051.1 Protein Homology CDS 99271 101352 . + 0 ID=cds-WP_001402645.1;Parent=gene-AD39_RS04250;Dbxref=GenBank:WP_001402645.1;Name=WP_001402645.1;Ontology_term=GO:0006281,GO:0006310,GO:0003676,GO:0003678,GO:0005524;gbkey=CDS;gene=recG;go_function=nucleic acid binding|0003676||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA,DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312554.1;locus_tag=AD39_RS04250;product=ATP-dependent DNA helicase RecG;protein_id=WP_001402645.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 101518 102723 . - . ID=gene-AD39_RS04245;Name=gltS;gbkey=Gene;gene=gltS;gene_biotype=protein_coding;locus_tag=AD39_RS04245;old_locus_tag=AD39_4220 NZ_JJLH01000051.1 Protein Homology CDS 101518 102723 . - 0 ID=cds-WP_000468836.1;Parent=gene-AD39_RS04245;Dbxref=GenBank:WP_000468836.1;Name=WP_000468836.1;Ontology_term=GO:0015813,GO:0015501,GO:0016020;gbkey=CDS;gene=gltS;go_component=membrane|0016020||IEA;go_function=glutamate:sodium symporter activity|0015501||IEA;go_process=L-glutamate transmembrane transport|0015813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312556.1;locus_tag=AD39_RS04245;product=sodium/glutamate symporter;protein_id=WP_000468836.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 103003 104394 . + . ID=gene-AD39_RS04240;Name=xanP;gbkey=Gene;gene=xanP;gene_biotype=protein_coding;locus_tag=AD39_RS04240;old_locus_tag=AD39_4221 NZ_JJLH01000051.1 Protein Homology CDS 103003 104394 . + 0 ID=cds-WP_001295238.1;Parent=gene-AD39_RS04240;Dbxref=GenBank:WP_001295238.1;Name=WP_001295238.1;gbkey=CDS;gene=xanP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312557.1;locus_tag=AD39_RS04240;product=xanthine/proton symporter XanP;protein_id=WP_001295238.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 104515 106224 . + . ID=gene-AD39_RS04235;Name=yicH;gbkey=Gene;gene=yicH;gene_biotype=protein_coding;locus_tag=AD39_RS04235;old_locus_tag=AD39_4222 NZ_JJLH01000051.1 Protein Homology CDS 104515 106224 . + 0 ID=cds-WP_032214942.1;Parent=gene-AD39_RS04235;Dbxref=GenBank:WP_032214942.1;Name=WP_032214942.1;gbkey=CDS;gene=yicH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418112.1;locus_tag=AD39_RS04235;product=AsmA family protein;protein_id=WP_032214942.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 106277 108595 . - . ID=gene-AD39_RS04230;Name=yicI;gbkey=Gene;gene=yicI;gene_biotype=protein_coding;locus_tag=AD39_RS04230;old_locus_tag=AD39_4223 NZ_JJLH01000051.1 Protein Homology CDS 106277 108595 . - 0 ID=cds-WP_000702871.1;Parent=gene-AD39_RS04230;Dbxref=GenBank:WP_000702871.1;Name=WP_000702871.1;Ontology_term=GO:0005975,GO:0004553;gbkey=CDS;gene=yicI;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418113.1;locus_tag=AD39_RS04230;product=alpha-xylosidase;protein_id=WP_000702871.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 108605 109987 . - . ID=gene-AD39_RS04225;Name=yicJ;gbkey=Gene;gene=yicJ;gene_biotype=protein_coding;locus_tag=AD39_RS04225;old_locus_tag=AD39_4224 NZ_JJLH01000051.1 Protein Homology CDS 108605 109987 . - 0 ID=cds-WP_000834439.1;Parent=gene-AD39_RS04225;Dbxref=GenBank:WP_000834439.1;Name=WP_000834439.1;Ontology_term=GO:0006814,GO:0008643,GO:0015293,GO:0016020;gbkey=CDS;gene=yicJ;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=sodium ion transport|0006814||IEA,carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418114.4;locus_tag=AD39_RS04225;product=glycoside-pentoside-hexuronide family transporter;protein_id=WP_000834439.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 110280 110374 . + . ID=gene-AD39_RS04220;Name=AD39_RS04220;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS04220;old_locus_tag=AD39_4225 NZ_JJLH01000051.1 tRNAscan-SE tRNA 110280 110374 . + . ID=rna-AD39_RS04220;Parent=gene-AD39_RS04220;anticodon=(pos:110314..110316);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS04220;product=tRNA-Sec NZ_JJLH01000051.1 tRNAscan-SE exon 110280 110374 . + . ID=exon-AD39_RS04220-1;Parent=rna-AD39_RS04220;anticodon=(pos:110314..110316);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS04220;product=tRNA-Sec NZ_JJLH01000051.1 RefSeq pseudogene 110453 110581 . + . ID=gene-AD39_RS04215;Name=rhuM;end_range=110581,.;gbkey=Gene;gene=rhuM;gene_biotype=pseudogene;locus_tag=AD39_RS04215;old_locus_tag=AD39_4226;partial=true;pseudo=true;start_range=.,110453 NZ_JJLH01000051.1 Protein Homology CDS 110453 110581 . + 0 ID=cds-AD39_RS04215;Parent=gene-AD39_RS04215;Note=internal stop%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=110581,.;gbkey=CDS;gene=rhuM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462654.1;locus_tag=AD39_RS04215;partial=true;product=RhuM family protein;pseudo=true;start_range=.,110453;transl_table=11 NZ_JJLH01000051.1 RefSeq pseudogene 111011 112194 . + . ID=gene-AD39_RS0125470;Name=setC;gbkey=Gene;gene=setC;gene_biotype=pseudogene;locus_tag=AD39_RS0125470;pseudo=true NZ_JJLH01000051.1 Protein Homology CDS 111011 112194 . + 0 ID=cds-AD39_RS0125470;Parent=gene-AD39_RS0125470;Note=frameshifted;Ontology_term=GO:0008643,GO:0005351,GO:0016020;gbkey=CDS;gene=setC;go_component=membrane|0016020||IEA;go_function=carbohydrate:proton symporter activity|0005351||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418115.1;locus_tag=AD39_RS0125470;product=sugar efflux transporter;pseudo=true;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 112305 113228 . + . ID=gene-AD39_RS04210;Name=yicL;gbkey=Gene;gene=yicL;gene_biotype=protein_coding;locus_tag=AD39_RS04210;old_locus_tag=AD39_4229 NZ_JJLH01000051.1 Protein Homology CDS 112305 113228 . + 0 ID=cds-WP_000535959.1;Parent=gene-AD39_RS04210;Dbxref=GenBank:WP_000535959.1;Name=WP_000535959.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yicL;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312621.1;locus_tag=AD39_RS04210;product=carboxylate/amino acid/amine transporter;protein_id=WP_000535959.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 113232 114050 . - . ID=gene-AD39_RS04205;Name=nlpA;gbkey=Gene;gene=nlpA;gene_biotype=protein_coding;locus_tag=AD39_RS04205;old_locus_tag=AD39_4230 NZ_JJLH01000051.1 Protein Homology CDS 113232 114050 . - 0 ID=cds-WP_023155718.1;Parent=gene-AD39_RS04205;Dbxref=GenBank:WP_023155718.1;Name=WP_023155718.1;gbkey=CDS;gene=nlpA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418117.1;locus_tag=AD39_RS04205;product=lipoprotein NlpA;protein_id=WP_023155718.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 114272 114565 . + . ID=gene-AD39_RS04200;Name=yicS;gbkey=Gene;gene=yicS;gene_biotype=protein_coding;locus_tag=AD39_RS04200;old_locus_tag=AD39_4231 NZ_JJLH01000051.1 Protein Homology CDS 114272 114565 . + 0 ID=cds-WP_000805509.1;Parent=gene-AD39_RS04200;Dbxref=GenBank:WP_000805509.1;Name=WP_000805509.1;gbkey=CDS;gene=yicS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588471.1;locus_tag=AD39_RS04200;product=protein YicS;protein_id=WP_000805509.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 114606 115796 . - . ID=gene-AD39_RS04195;Name=nepI;gbkey=Gene;gene=nepI;gene_biotype=protein_coding;locus_tag=AD39_RS04195;old_locus_tag=AD39_4232 NZ_JJLH01000051.1 Protein Homology CDS 114606 115796 . - 0 ID=cds-WP_001288549.1;Parent=gene-AD39_RS04195;Dbxref=GenBank:WP_001288549.1;Name=WP_001288549.1;Ontology_term=GO:0015860,GO:0015211,GO:0016020;gbkey=CDS;gene=nepI;go_component=membrane|0016020||IEA;go_function=purine nucleoside transmembrane transporter activity|0015211||IEA;go_process=purine nucleoside transmembrane transport|0015860||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418118.2;locus_tag=AD39_RS04195;product=purine ribonucleoside efflux pump NepI;protein_id=WP_001288549.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 116007 116459 . - . ID=gene-AD39_RS04190;Name=yicN;gbkey=Gene;gene=yicN;gene_biotype=protein_coding;locus_tag=AD39_RS04190;old_locus_tag=AD39_4233 NZ_JJLH01000051.1 Protein Homology CDS 116007 116459 . - 0 ID=cds-WP_001295241.1;Parent=gene-AD39_RS04190;Dbxref=GenBank:WP_001295241.1;Name=WP_001295241.1;gbkey=CDS;gene=yicN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418119.2;locus_tag=AD39_RS04190;product=DUF1198 domain-containing protein;protein_id=WP_001295241.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 116512 117846 . - . ID=gene-AD39_RS04185;Name=adeQ;gbkey=Gene;gene=adeQ;gene_biotype=protein_coding;gene_synonym=yicO;locus_tag=AD39_RS04185;old_locus_tag=AD39_4234 NZ_JJLH01000051.1 Protein Homology CDS 116512 117846 . - 0 ID=cds-WP_001349999.1;Parent=gene-AD39_RS04185;Dbxref=GenBank:WP_001349999.1;Name=WP_001349999.1;gbkey=CDS;gene=adeQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418120.2;locus_tag=AD39_RS04185;product=adenine permease AdeQ;protein_id=WP_001349999.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 118021 119787 . + . ID=gene-AD39_RS04180;Name=adeD;gbkey=Gene;gene=adeD;gene_biotype=protein_coding;locus_tag=AD39_RS04180;old_locus_tag=AD39_4235 NZ_JJLH01000051.1 Protein Homology CDS 118021 119787 . + 0 ID=cds-WP_001065694.1;Parent=gene-AD39_RS04180;Dbxref=GenBank:WP_001065694.1;Name=WP_001065694.1;gbkey=CDS;gene=adeD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418121.1;locus_tag=AD39_RS04180;product=adenine deaminase;protein_id=WP_001065694.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 119832 121223 . - . ID=gene-AD39_RS04175;Name=uhpT;gbkey=Gene;gene=uhpT;gene_biotype=protein_coding;locus_tag=AD39_RS04175;old_locus_tag=AD39_4236 NZ_JJLH01000051.1 Protein Homology CDS 119832 121223 . - 0 ID=cds-WP_032287646.1;Parent=gene-AD39_RS04175;Dbxref=GenBank:WP_032287646.1;Name=WP_032287646.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=uhpT;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312630.1;locus_tag=AD39_RS04175;product=hexose-6-phosphate:phosphate antiporter;protein_id=WP_032287646.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 121479 122798 . - . ID=gene-AD39_RS04170;Name=uhpC;gbkey=Gene;gene=uhpC;gene_biotype=protein_coding;locus_tag=AD39_RS04170;old_locus_tag=AD39_4237 NZ_JJLH01000051.1 Protein Homology CDS 121479 122798 . - 0 ID=cds-WP_001402648.1;Parent=gene-AD39_RS04170;Dbxref=GenBank:WP_001402648.1;Name=WP_001402648.1;gbkey=CDS;gene=uhpC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709527.2;locus_tag=AD39_RS04170;product=MFS transporter family glucose-6-phosphate receptor UhpC;protein_id=WP_001402648.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 122808 124310 . - . ID=gene-AD39_RS04165;Name=uhpB;gbkey=Gene;gene=uhpB;gene_biotype=protein_coding;locus_tag=AD39_RS04165;old_locus_tag=AD39_4238 NZ_JJLH01000051.1 Protein Homology CDS 122808 124310 . - 0 ID=cds-WP_001295243.1;Parent=gene-AD39_RS04165;Dbxref=GenBank:WP_001295243.1;Name=WP_001295243.1;Ontology_term=GO:0000160,GO:0000155;gbkey=CDS;gene=uhpB;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418124.4;locus_tag=AD39_RS04165;product=signal transduction histidine-protein kinase/phosphatase UhpB;protein_id=WP_001295243.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 124310 124900 . - . ID=gene-AD39_RS04160;Name=uhpA;gbkey=Gene;gene=uhpA;gene_biotype=protein_coding;locus_tag=AD39_RS04160;old_locus_tag=AD39_4239 NZ_JJLH01000051.1 Protein Homology CDS 124310 124900 . - 0 ID=cds-WP_000633668.1;Parent=gene-AD39_RS04160;Dbxref=GenBank:WP_000633668.1;Name=WP_000633668.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=uhpA;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312633.1;locus_tag=AD39_RS04160;product=transcriptional regulator UhpA;protein_id=WP_000633668.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 124975 125265 . - . ID=gene-AD39_RS04155;Name=ilvN;gbkey=Gene;gene=ilvN;gene_biotype=protein_coding;locus_tag=AD39_RS04155;old_locus_tag=AD39_4240 NZ_JJLH01000051.1 Protein Homology CDS 124975 125265 . - 0 ID=cds-WP_001181706.1;Parent=gene-AD39_RS04155;Dbxref=GenBank:WP_001181706.1;Name=WP_001181706.1;gbkey=CDS;gene=ilvN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312638.1;locus_tag=AD39_RS04155;product=acetolactate synthase small subunit;protein_id=WP_001181706.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 125269 126957 . - . ID=gene-AD39_RS04150;Name=ilvB;gbkey=Gene;gene=ilvB;gene_biotype=protein_coding;locus_tag=AD39_RS04150;old_locus_tag=AD39_4241 NZ_JJLH01000051.1 Protein Homology CDS 125269 126957 . - 0 ID=cds-WP_001475931.1;Parent=gene-AD39_RS04150;Dbxref=GenBank:WP_001475931.1;Name=WP_001475931.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvB;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418127.1;locus_tag=AD39_RS04150;product=acetolactate synthase large subunit;protein_id=WP_001475931.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 127063 127161 . - . ID=gene-AD39_RS26245;Name=ivbL;gbkey=Gene;gene=ivbL;gene_biotype=protein_coding;locus_tag=AD39_RS26245 NZ_JJLH01000051.1 Protein Homology CDS 127063 127161 . - 0 ID=cds-WP_001315912.1;Parent=gene-AD39_RS26245;Dbxref=GenBank:WP_001315912.1;Name=WP_001315912.1;gbkey=CDS;gene=ivbL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418128.1;locus_tag=AD39_RS26245;product=ilvB operon leader peptide IvbL;protein_id=WP_001315912.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 127726 127815 . + . ID=gene-AD39_RS0125490;Name=tisB;gbkey=Gene;gene=tisB;gene_biotype=protein_coding;locus_tag=AD39_RS0125490 NZ_JJLH01000051.1 Protein Homology CDS 127726 127815 . + 0 ID=cds-WP_000060506.1;Parent=gene-AD39_RS0125490;Dbxref=GenBank:WP_000060506.1;Name=WP_000060506.1;gbkey=CDS;gene=tisB;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009502662.1;locus_tag=AD39_RS0125490;product=type I toxin-antitoxin system toxin TisB;protein_id=WP_000060506.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 128078 128152 . - . ID=gene-AD39_RS29850;Name=ysdE;gbkey=Gene;gene=ysdE;gene_biotype=protein_coding;locus_tag=AD39_RS29850 NZ_JJLH01000051.1 Protein Homology CDS 128078 128152 . - 0 ID=cds-WP_211180519.1;Parent=gene-AD39_RS29850;Dbxref=GenBank:WP_211180519.1;Name=WP_211180519.1;gbkey=CDS;gene=ysdE;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051212.1;locus_tag=AD39_RS29850;product=protein YsdE;protein_id=WP_211180519.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 128234 129418 . + . ID=gene-AD39_RS04140;Name=emrD;gbkey=Gene;gene=emrD;gene_biotype=protein_coding;locus_tag=AD39_RS04140;old_locus_tag=AD39_4244 NZ_JJLH01000051.1 Protein Homology CDS 128234 129418 . + 0 ID=cds-WP_000828746.1;Parent=gene-AD39_RS04140;Dbxref=GenBank:WP_000828746.1;Name=WP_000828746.1;gbkey=CDS;gene=emrD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418129.2;locus_tag=AD39_RS04140;product=multidrug efflux MFS transporter EmrD;protein_id=WP_000828746.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 129426 129923 . - . ID=gene-AD39_RS04135;Name=yidF;gbkey=Gene;gene=yidF;gene_biotype=protein_coding;locus_tag=AD39_RS04135;old_locus_tag=AD39_4245 NZ_JJLH01000051.1 Protein Homology CDS 129426 129923 . - 0 ID=cds-WP_000148063.1;Parent=gene-AD39_RS04135;Dbxref=GenBank:WP_000148063.1;Name=WP_000148063.1;gbkey=CDS;gene=yidF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709521.1;locus_tag=AD39_RS04135;product=radical SAM protein;protein_id=WP_000148063.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 129920 130282 . - . ID=gene-AD39_RS04130;Name=yidG;gbkey=Gene;gene=yidG;gene_biotype=protein_coding;locus_tag=AD39_RS04130;old_locus_tag=AD39_4246 NZ_JJLH01000051.1 Protein Homology CDS 129920 130282 . - 0 ID=cds-WP_001113432.1;Parent=gene-AD39_RS04130;Dbxref=GenBank:WP_001113432.1;Name=WP_001113432.1;gbkey=CDS;gene=yidG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312643.1;locus_tag=AD39_RS04130;product=DUF202 domain-containing protein;protein_id=WP_001113432.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 130272 130619 . - . ID=gene-AD39_RS04125;Name=yidH;gbkey=Gene;gene=yidH;gene_biotype=protein_coding;locus_tag=AD39_RS04125;old_locus_tag=AD39_4247 NZ_JJLH01000051.1 Protein Homology CDS 130272 130619 . - 0 ID=cds-WP_000703959.1;Parent=gene-AD39_RS04125;Dbxref=GenBank:WP_000703959.1;Name=WP_000703959.1;Ontology_term=GO:0005886;gbkey=CDS;gene=yidH;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312644.1;locus_tag=AD39_RS04125;product=YidH family protein;protein_id=WP_000703959.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 130729 131178 . + . ID=gene-AD39_RS0125495;Name=yidI;gbkey=Gene;gene=yidI;gene_biotype=protein_coding;locus_tag=AD39_RS0125495;old_locus_tag=AD39_4249 NZ_JJLH01000051.1 Protein Homology CDS 130729 131178 . + 0 ID=cds-WP_000511287.1;Parent=gene-AD39_RS0125495;Dbxref=GenBank:WP_000511287.1;Name=WP_000511287.1;gbkey=CDS;gene=yidI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418133.1;locus_tag=AD39_RS0125495;product=protein YidI;protein_id=WP_000511287.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 131225 132718 . - . ID=gene-AD39_RS04120;Name=yidJ;gbkey=Gene;gene=yidJ;gene_biotype=protein_coding;locus_tag=AD39_RS04120;old_locus_tag=AD39_4250 NZ_JJLH01000051.1 Protein Homology CDS 131225 132718 . - 0 ID=cds-WP_000828483.1;Parent=gene-AD39_RS04120;Dbxref=GenBank:WP_000828483.1;Name=WP_000828483.1;Ontology_term=GO:0008484;gbkey=CDS;gene=yidJ;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418134.1;locus_tag=AD39_RS04120;product=sulfatase-like hydrolase/transferase;protein_id=WP_000828483.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 132715 134430 . - . ID=gene-AD39_RS04115;Name=yidK;gbkey=Gene;gene=yidK;gene_biotype=protein_coding;locus_tag=AD39_RS04115;old_locus_tag=AD39_4251 NZ_JJLH01000051.1 Protein Homology CDS 132715 134430 . - 0 ID=cds-WP_032221445.1;Parent=gene-AD39_RS04115;Dbxref=GenBank:WP_032221445.1;Name=WP_032221445.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yidK;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418135.1;locus_tag=AD39_RS04115;product=solute:sodium symporter family transporter;protein_id=WP_032221445.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 134597 135490 . + . ID=gene-AD39_RS04110;Name=yidL;gbkey=Gene;gene=yidL;gene_biotype=protein_coding;locus_tag=AD39_RS04110;old_locus_tag=AD39_4252 NZ_JJLH01000051.1 Protein Homology CDS 134597 135490 . + 0 ID=cds-WP_001013540.1;Parent=gene-AD39_RS04110;Dbxref=GenBank:WP_001013540.1;Name=WP_001013540.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=yidL;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418136.2;locus_tag=AD39_RS04110;product=helix-turn-helix transcriptional regulator;protein_id=WP_001013540.1;transl_table=11 NZ_JJLH01000051.1 RefSeq pseudogene 135487 136301 . - . ID=gene-AD39_RS04105;Name=AD39_RS04105;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS04105;old_locus_tag=AD39_4253;pseudo=true NZ_JJLH01000051.1 Protein Homology CDS 135487 136301 . - 0 ID=cds-AD39_RS04105;Parent=gene-AD39_RS04105;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015343942.1;locus_tag=AD39_RS04105;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 136301 137917 . - . ID=gene-AD39_RS04100;Name=AD39_RS04100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS04100;old_locus_tag=AD39_4254 NZ_JJLH01000051.1 Protein Homology CDS 136301 137917 . - 0 ID=cds-WP_032283598.1;Parent=gene-AD39_RS04100;Dbxref=GenBank:WP_032283598.1;Name=WP_032283598.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312650.2;locus_tag=AD39_RS04100;product=PTS sugar transporter subunit IIB;protein_id=WP_032283598.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 138213 138929 . + . ID=gene-AD39_RS0125500;Name=yidP;gbkey=Gene;gene=yidP;gene_biotype=protein_coding;locus_tag=AD39_RS0125500 NZ_JJLH01000051.1 Protein Homology CDS 138213 138929 . + 0 ID=cds-WP_001300779.1;Parent=gene-AD39_RS0125500;Dbxref=GenBank:WP_001300779.1;Name=WP_001300779.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;gene=yidP;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418139.1;locus_tag=AD39_RS0125500;product=GntR family transcriptional regulator;protein_id=WP_001300779.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 138926 140587 . - . ID=gene-AD39_RS04095;Name=yidE;gbkey=Gene;gene=yidE;gene_biotype=protein_coding;locus_tag=AD39_RS04095;old_locus_tag=AD39_4256 NZ_JJLH01000051.1 Protein Homology CDS 138926 140587 . - 0 ID=cds-WP_001279752.1;Parent=gene-AD39_RS04095;Dbxref=GenBank:WP_001279752.1;Name=WP_001279752.1;Ontology_term=GO:0006813,GO:0008324;gbkey=CDS;gene=yidE;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=potassium ion transport|0006813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312652.2;locus_tag=AD39_RS04095;product=putative transporter;protein_id=WP_001279752.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 140784 141212 . - . ID=gene-AD39_RS04090;Name=ibpB;gbkey=Gene;gene=ibpB;gene_biotype=protein_coding;locus_tag=AD39_RS04090;old_locus_tag=AD39_4258 NZ_JJLH01000051.1 Protein Homology CDS 140784 141212 . - 0 ID=cds-WP_001243431.1;Parent=gene-AD39_RS04090;Dbxref=GenBank:WP_001243431.1;Name=WP_001243431.1;Ontology_term=GO:0006950,GO:0051082;gbkey=CDS;gene=ibpB;go_function=unfolded protein binding|0051082||IEA;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709512.2;locus_tag=AD39_RS04090;product=small heat shock chaperone IbpB;protein_id=WP_001243431.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 141324 141737 . - . ID=gene-AD39_RS04085;Name=ibpA;gbkey=Gene;gene=ibpA;gene_biotype=protein_coding;locus_tag=AD39_RS04085;old_locus_tag=AD39_4259 NZ_JJLH01000051.1 Protein Homology CDS 141324 141737 . - 0 ID=cds-WP_001243437.1;Parent=gene-AD39_RS04085;Dbxref=GenBank:WP_001243437.1;Name=WP_001243437.1;Ontology_term=GO:0006950,GO:0051082;gbkey=CDS;gene=ibpA;go_function=unfolded protein binding|0051082||IEA;go_process=response to stress|0006950||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006687722.1;locus_tag=AD39_RS04085;product=small heat shock chaperone IbpA;protein_id=WP_001243437.1;transl_table=11 NZ_JJLH01000051.1 cmsearch sequence_feature 141731 141803 . - . ID=id-NZ_JJLH01000051.1:141731..141803;Dbxref=RFAM:RF01832;Note=ROSE (Repression Of Heat Shock gene Expression) occurs in the 5'-region of heat shock genes and acts as an RNA thermometer to modulate expression.;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5 NZ_JJLH01000051.1 RefSeq gene 142043 142375 . + . ID=gene-AD39_RS0125505;Name=yidQ;gbkey=Gene;gene=yidQ;gene_biotype=protein_coding;locus_tag=AD39_RS0125505;old_locus_tag=AD39_4260 NZ_JJLH01000051.1 Protein Homology CDS 142043 142375 . + 0 ID=cds-WP_000620888.1;Parent=gene-AD39_RS0125505;Dbxref=GenBank:WP_000620888.1;Name=WP_000620888.1;gbkey=CDS;gene=yidQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418143.2;locus_tag=AD39_RS0125505;product=YceK/YidQ family lipoprotein;protein_id=WP_000620888.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 142377 143591 . - . ID=gene-AD39_RS04080;Name=yidR;gbkey=Gene;gene=yidR;gene_biotype=protein_coding;locus_tag=AD39_RS04080;old_locus_tag=AD39_4261 NZ_JJLH01000051.1 Protein Homology CDS 142377 143591 . - 0 ID=cds-WP_001295245.1;Parent=gene-AD39_RS04080;Dbxref=GenBank:WP_001295245.1;Name=WP_001295245.1;gbkey=CDS;gene=yidR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312656.3;locus_tag=AD39_RS04080;product=DUF3748 domain-containing protein;protein_id=WP_001295245.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 143692 144756 . + . ID=gene-AD39_RS04075;Name=cbrA;gbkey=Gene;gene=cbrA;gene_biotype=protein_coding;locus_tag=AD39_RS04075;old_locus_tag=AD39_4262 NZ_JJLH01000051.1 Protein Homology CDS 143692 144756 . + 0 ID=cds-WP_001298958.1;Parent=gene-AD39_RS04075;Dbxref=GenBank:WP_001298958.1;Name=WP_001298958.1;gbkey=CDS;gene=cbrA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418145.2;locus_tag=AD39_RS04075;product=colicin M resistance lipid reductase CbrA;protein_id=WP_001298958.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 144753 146090 . - . ID=gene-AD39_RS04070;Name=dgoT;gbkey=Gene;gene=dgoT;gene_biotype=protein_coding;locus_tag=AD39_RS04070;old_locus_tag=AD39_4263 NZ_JJLH01000051.1 Protein Homology CDS 144753 146090 . - 0 ID=cds-WP_000253455.1;Parent=gene-AD39_RS04070;Dbxref=GenBank:WP_000253455.1;Name=WP_000253455.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=dgoT;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709507.1;locus_tag=AD39_RS04070;product=MFS transporter;protein_id=WP_000253455.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 146165 147313 . - . ID=gene-AD39_RS04065;Name=dgoD;gbkey=Gene;gene=dgoD;gene_biotype=protein_coding;locus_tag=AD39_RS04065;old_locus_tag=AD39_4264 NZ_JJLH01000051.1 Protein Homology CDS 146165 147313 . - 0 ID=cds-WP_000705001.1;Parent=gene-AD39_RS04065;Dbxref=GenBank:WP_000705001.1;Name=WP_000705001.1;Ontology_term=GO:0009063,GO:0008869;gbkey=CDS;gene=dgoD;go_function=galactonate dehydratase activity|0008869||IEA;go_process=amino acid catabolic process|0009063||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020077623.1;locus_tag=AD39_RS04065;product=galactonate dehydratase;protein_id=WP_000705001.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 147310 147927 . - . ID=gene-AD39_RS04060;Name=dgoA;gbkey=Gene;gene=dgoA;gene_biotype=protein_coding;locus_tag=AD39_RS04060;old_locus_tag=AD39_4265 NZ_JJLH01000051.1 Protein Homology CDS 147310 147927 . - 0 ID=cds-WP_001198699.1;Parent=gene-AD39_RS04060;Dbxref=GenBank:WP_001198699.1;Name=WP_001198699.1;gbkey=CDS;gene=dgoA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026238.1;locus_tag=AD39_RS04060;product=2-dehydro-3-deoxy-6-phosphogalactonate aldolase;protein_id=WP_001198699.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 147911 148789 . - . ID=gene-AD39_RS04055;Name=dgoK;gbkey=Gene;gene=dgoK;gene_biotype=protein_coding;locus_tag=AD39_RS04055;old_locus_tag=AD39_4266 NZ_JJLH01000051.1 Protein Homology CDS 147911 148789 . - 0 ID=cds-WP_000127112.1;Parent=gene-AD39_RS04055;Dbxref=GenBank:WP_000127112.1;Name=WP_000127112.1;gbkey=CDS;gene=dgoK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709506.1;locus_tag=AD39_RS04055;product=2-dehydro-3-deoxygalactonokinase;protein_id=WP_000127112.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 148786 149475 . - . ID=gene-AD39_RS04050;Name=dgoR;gbkey=Gene;gene=dgoR;gene_biotype=protein_coding;locus_tag=AD39_RS04050;old_locus_tag=AD39_4267 NZ_JJLH01000051.1 Protein Homology CDS 148786 149475 . - 0 ID=cds-WP_000174305.1;Parent=gene-AD39_RS04050;Dbxref=GenBank:WP_000174305.1;Name=WP_000174305.1;gbkey=CDS;gene=dgoR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709505.1;locus_tag=AD39_RS04050;product=D-galactonate utilization transcriptional regulator DgoR;protein_id=WP_000174305.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 149753 150409 . + . ID=gene-AD39_RS04045;Name=yidX;gbkey=Gene;gene=yidX;gene_biotype=protein_coding;locus_tag=AD39_RS04045;old_locus_tag=AD39_4268 NZ_JJLH01000051.1 Protein Homology CDS 149753 150409 . + 0 ID=cds-WP_000773804.1;Parent=gene-AD39_RS04045;Dbxref=GenBank:WP_000773804.1;Name=WP_000773804.1;gbkey=CDS;gene=yidX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709504.1;locus_tag=AD39_RS04045;product=protein YidX;protein_id=WP_000773804.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 150455 151267 . - . ID=gene-AD39_RS04040;Name=yidA;gbkey=Gene;gene=yidA;gene_biotype=protein_coding;locus_tag=AD39_RS04040;old_locus_tag=AD39_4269 NZ_JJLH01000051.1 Protein Homology CDS 150455 151267 . - 0 ID=cds-WP_032283600.1;Parent=gene-AD39_RS04040;Dbxref=GenBank:WP_032283600.1;Name=WP_032283600.1;Ontology_term=GO:0016787;gbkey=CDS;gene=yidA;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418152.1;locus_tag=AD39_RS04040;product=sugar-phosphatase;protein_id=WP_032283600.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 151382 151780 . - . ID=gene-AD39_RS04035;Name=yidB;gbkey=Gene;gene=yidB;gene_biotype=protein_coding;locus_tag=AD39_RS04035;old_locus_tag=AD39_4270 NZ_JJLH01000051.1 Protein Homology CDS 151382 151780 . - 0 ID=cds-WP_000522208.1;Parent=gene-AD39_RS04035;Dbxref=GenBank:WP_000522208.1;Name=WP_000522208.1;gbkey=CDS;gene=yidB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418153.4;locus_tag=AD39_RS04035;product=YidB family protein;protein_id=WP_000522208.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 152020 154434 . - . ID=gene-AD39_RS04030;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=AD39_RS04030;old_locus_tag=AD39_4271 NZ_JJLH01000051.1 Protein Homology CDS 152020 154434 . - 0 ID=cds-WP_001508092.1;Parent=gene-AD39_RS04030;Dbxref=GenBank:WP_001508092.1;Name=WP_001508092.1;Ontology_term=GO:0006265,GO:0003677,GO:0003918,GO:0005524,GO:0005694;gbkey=CDS;gene=gyrB;go_component=chromosome|0005694||IEA;go_function=DNA binding|0003677||IEA,DNA topoisomerase type II (double strand cut%2C ATP-hydrolyzing) activity|0003918||IEA,ATP binding|0005524||IEA;go_process=DNA topological change|0006265||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121480.1;locus_tag=AD39_RS04030;product=DNA topoisomerase (ATP-hydrolyzing) subunit B;protein_id=WP_001508092.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 154463 155536 . - . ID=gene-AD39_RS04025;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=AD39_RS04025;old_locus_tag=AD39_4272 NZ_JJLH01000051.1 Protein Homology CDS 154463 155536 . - 0 ID=cds-WP_000060112.1;Parent=gene-AD39_RS04025;Dbxref=GenBank:WP_000060112.1;Name=WP_000060112.1;Note=All proteins in this family for which functions are known are DNA-binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair.;Ontology_term=GO:0006260,GO:0006281,GO:0006310,GO:0009432,GO:0003697,GO:0005524;gbkey=CDS;gene=recF;go_function=single-stranded DNA binding|0003697||IEA,ATP binding|0005524||IEA;go_process=DNA replication|0006260||IEA,DNA repair|0006281||IEA,DNA recombination|0006310||IEA,SOS response|0009432||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121479.1;locus_tag=AD39_RS04025;product=DNA replication/repair protein RecF;protein_id=WP_000060112.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 155536 156636 . - . ID=gene-AD39_RS04020;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=AD39_RS04020;old_locus_tag=AD39_4273 NZ_JJLH01000051.1 Protein Homology CDS 155536 156636 . - 0 ID=cds-WP_000673464.1;Parent=gene-AD39_RS04020;Dbxref=GenBank:WP_000673464.1;Name=WP_000673464.1;Ontology_term=GO:0006260,GO:0003677,GO:0003887,GO:0009360;gbkey=CDS;gene=dnaN;go_component=DNA polymerase III complex|0009360||IEA;go_function=DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006177590.1;locus_tag=AD39_RS04020;product=DNA polymerase III subunit beta;protein_id=WP_000673464.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 156641 158044 . - . ID=gene-AD39_RS04015;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=AD39_RS04015;old_locus_tag=AD39_4274 NZ_JJLH01000051.1 Protein Homology CDS 156641 158044 . - 0 ID=cds-WP_001508093.1;Parent=gene-AD39_RS04015;Dbxref=GenBank:WP_001508093.1;Name=WP_001508093.1;Ontology_term=GO:0006270,GO:0006275,GO:0003677,GO:0003688,GO:0005524;gbkey=CDS;gene=dnaA;go_function=DNA binding|0003677||IEA,DNA replication origin binding|0003688||IEA,ATP binding|0005524||IEA;go_process=DNA replication initiation|0006270||IEA,regulation of DNA replication|0006275||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418157.1;locus_tag=AD39_RS04015;product=chromosomal replication initiator protein DnaA;protein_id=WP_001508093.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 158341 158421 . + . ID=gene-AD39_RS29270;Name=AD39_RS29270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29270 NZ_JJLH01000051.1 Protein Homology CDS 158341 158421 . + 0 ID=cds-WP_120795392.1;Parent=gene-AD39_RS29270;Dbxref=GenBank:WP_120795392.1;Name=WP_120795392.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518826.1;locus_tag=AD39_RS29270;product=protein YsdD;protein_id=WP_120795392.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 158651 158791 . + . ID=gene-AD39_RS04010;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=AD39_RS04010;old_locus_tag=AD39_4275 NZ_JJLH01000051.1 Protein Homology CDS 158651 158791 . + 0 ID=cds-WP_000831330.1;Parent=gene-AD39_RS04010;Dbxref=GenBank:WP_000831330.1;Name=WP_000831330.1;Ontology_term=GO:0006412,GO:0003735,GO:0000315,GO:0022625;gbkey=CDS;gene=rpmH;go_component=organellar large ribosomal subunit|0000315||IEA,cytosolic large ribosomal subunit|0022625||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001686914.1;locus_tag=AD39_RS04010;product=50S ribosomal protein L34;protein_id=WP_000831330.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 158808 159167 . + . ID=gene-AD39_RS04005;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=AD39_RS04005;old_locus_tag=AD39_4276 NZ_JJLH01000051.1 Protein Homology CDS 158808 159167 . + 0 ID=cds-WP_000239730.1;Parent=gene-AD39_RS04005;Dbxref=GenBank:WP_000239730.1;Name=WP_000239730.1;Ontology_term=GO:0008033,GO:0000049,GO:0004526;gbkey=CDS;gene=rnpA;go_function=tRNA binding|0000049||IEA,ribonuclease P activity|0004526||IEA;go_process=tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014172301.1;locus_tag=AD39_RS04005;product=ribonuclease P protein component;protein_id=WP_000239730.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 159131 159388 . + . ID=gene-AD39_RS0125515;Name=yidD;gbkey=Gene;gene=yidD;gene_biotype=protein_coding;locus_tag=AD39_RS0125515 NZ_JJLH01000051.1 Protein Homology CDS 159131 159388 . + 0 ID=cds-WP_001307474.1;Parent=gene-AD39_RS0125515;Dbxref=GenBank:WP_001307474.1;Name=WP_001307474.1;gbkey=CDS;gene=yidD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_462741.1;locus_tag=AD39_RS0125515;product=membrane protein insertion efficiency factor YidD;protein_id=WP_001307474.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 159391 161037 . + . ID=gene-AD39_RS04000;Name=yidC;gbkey=Gene;gene=yidC;gene_biotype=protein_coding;locus_tag=AD39_RS04000;old_locus_tag=AD39_4277 NZ_JJLH01000051.1 Protein Homology CDS 159391 161037 . + 0 ID=cds-WP_000378258.1;Parent=gene-AD39_RS04000;Dbxref=GenBank:WP_000378258.1;Name=WP_000378258.1;Ontology_term=GO:0032977,GO:0016020;gbkey=CDS;gene=yidC;go_component=membrane|0016020||IEA;go_function=membrane insertase activity|0032977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312667.1;locus_tag=AD39_RS04000;product=membrane protein insertase YidC;protein_id=WP_000378258.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 161143 162507 . + . ID=gene-AD39_RS03995;Name=mnmE;gbkey=Gene;gene=mnmE;gene_biotype=protein_coding;locus_tag=AD39_RS03995;old_locus_tag=AD39_4278 NZ_JJLH01000051.1 Protein Homology CDS 161143 162507 . + 0 ID=cds-WP_001282346.1;Parent=gene-AD39_RS03995;Dbxref=GenBank:WP_001282346.1;Name=WP_001282346.1;Ontology_term=GO:0006400,GO:0003924,GO:0005515,GO:0005525;gbkey=CDS;gene=mnmE;go_function=GTPase activity|0003924||IEA,protein binding|0005515||IEA,GTP binding|0005525||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418162.1;locus_tag=AD39_RS03995;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE;protein_id=WP_001282346.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 162750 162824 . + . ID=gene-AD39_RS0125520;Name=tnaC;gbkey=Gene;gene=tnaC;gene_biotype=protein_coding;locus_tag=AD39_RS0125520 NZ_JJLH01000051.1 Protein Homology CDS 162750 162824 . + 0 ID=cds-WP_001364348.1;Parent=gene-AD39_RS0125520;Dbxref=GenBank:WP_001364348.1;Name=WP_001364348.1;Ontology_term=GO:0006569,GO:0031554,GO:0031556;gbkey=CDS;gene=tnaC;go_process=L-tryptophan catabolic process|0006569||IEA,regulation of termination of DNA-templated transcription|0031554||IEA,transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312671.1;locus_tag=AD39_RS0125520;product=tryptophanase leader peptide;protein_id=WP_001364348.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 163045 164460 . + . ID=gene-AD39_RS03990;Name=tnaA;gbkey=Gene;gene=tnaA;gene_biotype=protein_coding;locus_tag=AD39_RS03990;old_locus_tag=AD39_4279 NZ_JJLH01000051.1 Protein Homology CDS 163045 164460 . + 0 ID=cds-WP_001295247.1;Parent=gene-AD39_RS03990;Dbxref=GenBank:WP_001295247.1;Name=WP_001295247.1;Ontology_term=GO:0006568,GO:0009034;gbkey=CDS;gene=tnaA;go_function=tryptophanase activity|0009034||IEA;go_process=L-tryptophan metabolic process|0006568||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709490.2;locus_tag=AD39_RS03990;product=tryptophanase;protein_id=WP_001295247.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 164551 165798 . + . ID=gene-AD39_RS03985;Name=tnaB;gbkey=Gene;gene=tnaB;gene_biotype=protein_coding;locus_tag=AD39_RS03985;old_locus_tag=AD39_4280 NZ_JJLH01000051.1 Protein Homology CDS 164551 165798 . + 0 ID=cds-WP_000131911.1;Parent=gene-AD39_RS03985;Dbxref=GenBank:WP_000131911.1;Name=WP_000131911.1;gbkey=CDS;gene=tnaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312673.1;locus_tag=AD39_RS03985;product=low affinity tryptophan permease TnaB;protein_id=WP_000131911.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 165931 167106 . + . ID=gene-AD39_RS03980;Name=mdtL;gbkey=Gene;gene=mdtL;gene_biotype=protein_coding;locus_tag=AD39_RS03980;old_locus_tag=AD39_4281 NZ_JJLH01000051.1 Protein Homology CDS 165931 167106 . + 0 ID=cds-WP_000085987.1;Parent=gene-AD39_RS03980;Dbxref=GenBank:WP_000085987.1;Name=WP_000085987.1;gbkey=CDS;gene=mdtL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418166.1;locus_tag=AD39_RS03980;product=multidrug efflux MFS transporter MdtL;protein_id=WP_000085987.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 167081 168040 . + . ID=gene-AD39_RS03975;Name=yidZ;gbkey=Gene;gene=yidZ;gene_biotype=protein_coding;locus_tag=AD39_RS03975;old_locus_tag=AD39_4282 NZ_JJLH01000051.1 Protein Homology CDS 167081 168040 . + 0 ID=cds-WP_001378463.1;Parent=gene-AD39_RS03975;Dbxref=GenBank:WP_001378463.1;Name=WP_001378463.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=yidZ;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418167.1;locus_tag=AD39_RS03975;product=HTH-type transcriptional regulator YidZ;protein_id=WP_001378463.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 168197 168946 . + . ID=gene-AD39_RS03970;Name=yieE;gbkey=Gene;gene=yieE;gene_biotype=protein_coding;locus_tag=AD39_RS03970;old_locus_tag=AD39_4283 NZ_JJLH01000051.1 Protein Homology CDS 168197 168946 . + 0 ID=cds-WP_032283602.1;Parent=gene-AD39_RS03970;Dbxref=GenBank:WP_032283602.1;Name=WP_032283602.1;Ontology_term=GO:0008897;gbkey=CDS;gene=yieE;go_function=holo-[acyl-carrier-protein] synthase activity|0008897||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418168.2;locus_tag=AD39_RS03970;product=4'-phosphopantetheinyl transferase family protein;protein_id=WP_032283602.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 168968 169534 . + . ID=gene-AD39_RS03965;Name=yieF;gbkey=Gene;gene=yieF;gene_biotype=protein_coding;gene_synonym=chrR;locus_tag=AD39_RS03965;old_locus_tag=AD39_4284 NZ_JJLH01000051.1 Protein Homology CDS 168968 169534 . + 0 ID=cds-WP_001291123.1;Parent=gene-AD39_RS03965;Dbxref=GenBank:WP_001291123.1;Name=WP_001291123.1;gbkey=CDS;gene=yieF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312677.1;locus_tag=AD39_RS03965;product=class I chromate reductase YieF;protein_id=WP_001291123.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 169588 170925 . - . ID=gene-AD39_RS03960;Name=adeP;gbkey=Gene;gene=adeP;gene_biotype=protein_coding;locus_tag=AD39_RS03960;old_locus_tag=AD39_4285 NZ_JJLH01000051.1 Protein Homology CDS 169588 170925 . - 0 ID=cds-WP_000082693.1;Parent=gene-AD39_RS03960;Dbxref=GenBank:WP_000082693.1;Name=WP_000082693.1;gbkey=CDS;gene=adeP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312678.1;locus_tag=AD39_RS03960;product=adenine permease AdeP;protein_id=WP_000082693.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 171092 171757 . + . ID=gene-AD39_RS03955;Name=yieH;gbkey=Gene;gene=yieH;gene_biotype=protein_coding;locus_tag=AD39_RS03955;old_locus_tag=AD39_4286 NZ_JJLH01000051.1 Protein Homology CDS 171092 171757 . + 0 ID=cds-WP_000078043.1;Parent=gene-AD39_RS03955;Dbxref=GenBank:WP_000078043.1;Name=WP_000078043.1;gbkey=CDS;gene=yieH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418171.1;locus_tag=AD39_RS03955;product=6-phosphogluconate phosphatase;protein_id=WP_000078043.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 171824 172297 . + . ID=gene-AD39_RS03950;Name=cbrB;gbkey=Gene;gene=cbrB;gene_biotype=protein_coding;locus_tag=AD39_RS03950;old_locus_tag=AD39_4287 NZ_JJLH01000051.1 Protein Homology CDS 171824 172297 . + 0 ID=cds-WP_000116772.1;Parent=gene-AD39_RS03950;Dbxref=GenBank:WP_000116772.1;Name=WP_000116772.1;gbkey=CDS;gene=cbrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709481.1;locus_tag=AD39_RS03950;product=protein CbrB;protein_id=WP_000116772.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 172346 172933 . + . ID=gene-AD39_RS03945;Name=cbrC;gbkey=Gene;gene=cbrC;gene_biotype=protein_coding;locus_tag=AD39_RS03945;old_locus_tag=AD39_4288 NZ_JJLH01000051.1 Protein Homology CDS 172346 172933 . + 0 ID=cds-WP_032283604.1;Parent=gene-AD39_RS03945;Dbxref=GenBank:WP_032283604.1;Name=WP_032283604.1;Ontology_term=GO:0030153;gbkey=CDS;gene=cbrC;go_process=bacteriocin immunity|0030153||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418173.1;locus_tag=AD39_RS03945;product=PF03691 family colicin E2 tolerance protein CbrC;protein_id=WP_032283604.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 172995 173717 . - . ID=gene-AD39_RS03940;Name=yieK;gbkey=Gene;gene=yieK;gene_biotype=protein_coding;locus_tag=AD39_RS03940;old_locus_tag=AD39_4289 NZ_JJLH01000051.1 Protein Homology CDS 172995 173717 . - 0 ID=cds-WP_000766900.1;Parent=gene-AD39_RS03940;Dbxref=GenBank:WP_000766900.1;Name=WP_000766900.1;Ontology_term=GO:0006044,GO:0004342;gbkey=CDS;gene=yieK;go_function=glucosamine-6-phosphate deaminase activity|0004342||IEA;go_process=N-acetylglucosamine metabolic process|0006044||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026242.1;locus_tag=AD39_RS03940;product=glucosamine-6-phosphate deaminase;protein_id=WP_000766900.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 173732 174901 . - . ID=gene-AD39_RS03935;Name=yieL;gbkey=Gene;gene=yieL;gene_biotype=protein_coding;locus_tag=AD39_RS03935;old_locus_tag=AD39_4290 NZ_JJLH01000051.1 Protein Homology CDS 173732 174901 . - 0 ID=cds-WP_001358258.1;Parent=gene-AD39_RS03935;Dbxref=GenBank:WP_001358258.1;Name=WP_001358258.1;gbkey=CDS;gene=yieL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418175.3;locus_tag=AD39_RS03935;product=alpha/beta hydrolase;protein_id=WP_001358258.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 174928 176544 . - . ID=gene-AD39_RS03930;Name=bglH;gbkey=Gene;gene=bglH;gene_biotype=protein_coding;locus_tag=AD39_RS03930;old_locus_tag=AD39_4291 NZ_JJLH01000051.1 Protein Homology CDS 174928 176544 . - 0 ID=cds-WP_000489871.1;Parent=gene-AD39_RS03930;Dbxref=GenBank:WP_000489871.1;Name=WP_000489871.1;gbkey=CDS;gene=bglH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418176.1;locus_tag=AD39_RS03930;product=carbohydrate-specific porin BglH;protein_id=WP_000489871.1;transl_table=11 NZ_JJLH01000051.1 RefSeq pseudogene 176613 178024 . - . ID=gene-AD39_RS03925;Name=bglB;gbkey=Gene;gene=bglB;gene_biotype=pseudogene;locus_tag=AD39_RS03925;old_locus_tag=AD39_4292;pseudo=true NZ_JJLH01000051.1 Protein Homology CDS 176613 178024 . - 0 ID=cds-AD39_RS03925;Parent=gene-AD39_RS03925;Note=frameshifted;gbkey=CDS;gene=bglB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418177.1;locus_tag=AD39_RS03925;product=6-phospho-beta-glucosidase BglB;pseudo=true;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 178043 179920 . - . ID=gene-AD39_RS03920;Name=bglF;gbkey=Gene;gene=bglF;gene_biotype=protein_coding;locus_tag=AD39_RS03920;old_locus_tag=AD39_4293 NZ_JJLH01000051.1 Protein Homology CDS 178043 179920 . - 0 ID=cds-WP_001440846.1;Parent=gene-AD39_RS03920;Dbxref=GenBank:WP_001440846.1;Name=WP_001440846.1;gbkey=CDS;gene=bglF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418178.1;locus_tag=AD39_RS03920;product=PTS beta-glucoside transporter subunit IIABC;protein_id=WP_001440846.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 180054 180890 . - . ID=gene-AD39_RS03915;Name=bglG;gbkey=Gene;gene=bglG;gene_biotype=protein_coding;locus_tag=AD39_RS03915;old_locus_tag=AD39_4294 NZ_JJLH01000051.1 Protein Homology CDS 180054 180890 . - 0 ID=cds-WP_001402653.1;Parent=gene-AD39_RS03915;Dbxref=GenBank:WP_001402653.1;Name=WP_001402653.1;Ontology_term=GO:0006355;gbkey=CDS;gene=bglG;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418179.1;locus_tag=AD39_RS03915;product=transcriptional antiterminator BglG;protein_id=WP_001402653.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 181176 181901 . - . ID=gene-AD39_RS03910;Name=phoU;gbkey=Gene;gene=phoU;gene_biotype=protein_coding;locus_tag=AD39_RS03910;old_locus_tag=AD39_4296 NZ_JJLH01000051.1 Protein Homology CDS 181176 181901 . - 0 ID=cds-WP_000377786.1;Parent=gene-AD39_RS03910;Dbxref=GenBank:WP_000377786.1;Name=WP_000377786.1;Ontology_term=GO:0030643;gbkey=CDS;gene=phoU;go_process=intracellular phosphate ion homeostasis|0030643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418180.1;locus_tag=AD39_RS03910;product=phosphate signaling complex protein PhoU;protein_id=WP_000377786.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 181916 182689 . - . ID=gene-AD39_RS03905;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=AD39_RS03905;old_locus_tag=AD39_4297 NZ_JJLH01000051.1 Protein Homology CDS 181916 182689 . - 0 ID=cds-WP_000063125.1;Parent=gene-AD39_RS03905;Dbxref=GenBank:WP_000063125.1;Name=WP_000063125.1;Ontology_term=GO:0006817,GO:0005524,GO:0015415,GO:0009898,GO:0055052;gbkey=CDS;gene=pstB;go_component=cytoplasmic side of plasma membrane|0009898||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ATP binding|0005524||IEA,ATPase-coupled phosphate ion transmembrane transporter activity|0015415||IEA;go_process=phosphate ion transport|0006817||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000063125.1;locus_tag=AD39_RS03905;product=phosphate ABC transporter ATP-binding protein PstB;protein_id=WP_000063125.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 182780 183670 . - . ID=gene-AD39_RS03900;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=AD39_RS03900;old_locus_tag=AD39_4298 NZ_JJLH01000051.1 Protein Homology CDS 182780 183670 . - 0 ID=cds-WP_001426463.1;Parent=gene-AD39_RS03900;Dbxref=GenBank:WP_001426463.1;Name=WP_001426463.1;Ontology_term=GO:0035435,GO:0005886;gbkey=CDS;gene=pstA;go_component=plasma membrane|0005886||IEA;go_process=phosphate ion transmembrane transport|0035435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312689.1;locus_tag=AD39_RS03900;product=phosphate ABC transporter permease PstA;protein_id=WP_001426463.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 183670 184629 . - . ID=gene-AD39_RS03895;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=AD39_RS03895;old_locus_tag=AD39_4299 NZ_JJLH01000051.1 Protein Homology CDS 183670 184629 . - 0 ID=cds-WP_001513437.1;Parent=gene-AD39_RS03895;Dbxref=GenBank:WP_001513437.1;Name=WP_001513437.1;Ontology_term=GO:0006817,GO:0055085,GO:0016020;gbkey=CDS;gene=pstC;go_component=membrane|0016020||IEA;go_process=phosphate ion transport|0006817||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008806729.1;locus_tag=AD39_RS03895;product=phosphate ABC transporter permease PstC;protein_id=WP_001513437.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 184716 185756 . - . ID=gene-AD39_RS03890;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=AD39_RS03890;old_locus_tag=AD39_4300 NZ_JJLH01000051.1 Protein Homology CDS 184716 185756 . - 0 ID=cds-WP_000867146.1;Parent=gene-AD39_RS03890;Dbxref=GenBank:WP_000867146.1;Name=WP_000867146.1;Ontology_term=GO:0035435,GO:0042301,GO:0043190;gbkey=CDS;gene=pstS;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=phosphate ion binding|0042301||IEA;go_process=phosphate ion transmembrane transport|0035435||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418184.1;locus_tag=AD39_RS03890;product=phosphate ABC transporter substrate-binding protein PstS;protein_id=WP_000867146.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 186004 187077 . - . ID=gene-AD39_RS03885;Name=lpfD-O113;gbkey=Gene;gene=lpfD-O113;gene_biotype=protein_coding;locus_tag=AD39_RS03885;old_locus_tag=AD39_4301 NZ_JJLH01000051.1 Protein Homology CDS 186004 187077 . - 0 ID=cds-WP_001046030.1;Parent=gene-AD39_RS03885;Dbxref=GenBank:WP_001046030.1;Name=WP_001046030.1;Note=LpfA-O113 is the major subunit of a form of long polar fimbria first described in LEE-negative%2C Shiga toxin-producing enterohemorrhagic Escherichia coli (STEC) of serotype O113:H21. This protein%2C designated LpfD-O113%2C is the minor subunit of this chaperone-usher type fimbrial system.;gbkey=CDS;gene=lpfD-O113;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001685709.1;locus_tag=AD39_RS03885;product=long polar fimbrial minor subunit LpfD-O113;protein_id=WP_001046030.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 187088 189610 . - . ID=gene-AD39_RS03880;Name=lpfC-O113;gbkey=Gene;gene=lpfC-O113;gene_biotype=protein_coding;locus_tag=AD39_RS03880;old_locus_tag=AD39_4302 NZ_JJLH01000051.1 Protein Homology CDS 187088 189610 . - 0 ID=cds-WP_032221451.1;Parent=gene-AD39_RS03880;Dbxref=GenBank:WP_032221451.1;Name=WP_032221451.1;gbkey=CDS;gene=lpfC-O113;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709462.1;locus_tag=AD39_RS03880;product=long polar fimbrial usher protein LpfC-O113;protein_id=WP_032221451.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 189635 190366 . - . ID=gene-AD39_RS03875;Name=lpfB-O113;gbkey=Gene;gene=lpfB-O113;gene_biotype=protein_coding;locus_tag=AD39_RS03875;old_locus_tag=AD39_4303 NZ_JJLH01000051.1 Protein Homology CDS 189635 190366 . - 0 ID=cds-WP_000088114.1;Parent=gene-AD39_RS03875;Dbxref=GenBank:WP_000088114.1;Name=WP_000088114.1;gbkey=CDS;gene=lpfB-O113;inference=COORDINATES: similar to AA sequence:RefSeq:WP_316045823.1;locus_tag=AD39_RS03875;product=long polar fimbrial chaperone LpfB-O113;protein_id=WP_000088114.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 190414 190986 . - . ID=gene-AD39_RS03870;Name=lpfA-O113;gbkey=Gene;gene=lpfA-O113;gene_biotype=protein_coding;locus_tag=AD39_RS03870;old_locus_tag=AD39_4304 NZ_JJLH01000051.1 Protein Homology CDS 190414 190986 . - 0 ID=cds-WP_000827806.1;Parent=gene-AD39_RS03870;Dbxref=GenBank:WP_000827806.1;Name=WP_000827806.1;gbkey=CDS;gene=lpfA-O113;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709540.1;locus_tag=AD39_RS03870;product=long polar fimbria major subunit LpfA-O113;protein_id=WP_000827806.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 191288 193117 . - . ID=gene-AD39_RS03865;Name=glmS;gbkey=Gene;gene=glmS;gene_biotype=protein_coding;locus_tag=AD39_RS03865;old_locus_tag=AD39_4305 NZ_JJLH01000051.1 Protein Homology CDS 191288 193117 . - 0 ID=cds-WP_000334099.1;Parent=gene-AD39_RS03865;Dbxref=GenBank:WP_000334099.1;Name=WP_000334099.1;Ontology_term=GO:1901137,GO:0004360;gbkey=CDS;gene=glmS;go_function=glutamine-fructose-6-phosphate transaminase (isomerizing) activity|0004360||IEA;go_process=carbohydrate derivative biosynthetic process|1901137||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121462.1;locus_tag=AD39_RS03865;product=glutamine--fructose-6-phosphate transaminase (isomerizing);protein_id=WP_000334099.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 193279 194649 . - . ID=gene-AD39_RS03860;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=AD39_RS03860;old_locus_tag=AD39_4306 NZ_JJLH01000051.1 Protein Homology CDS 193279 194649 . - 0 ID=cds-WP_000933736.1;Parent=gene-AD39_RS03860;Dbxref=GenBank:WP_000933736.1;Name=WP_000933736.1;Ontology_term=GO:0000902,GO:0006048,GO:0009252,GO:0000287,GO:0003977,GO:0019134;gbkey=CDS;gene=glmU;go_function=magnesium ion binding|0000287||IEA,UDP-N-acetylglucosamine diphosphorylase activity|0003977||IEA,glucosamine-1-phosphate N-acetyltransferase activity|0019134||IEA;go_process=cell morphogenesis|0000902||IEA,UDP-N-acetylglucosamine biosynthetic process|0006048||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312699.1;locus_tag=AD39_RS03860;product=bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU;protein_id=WP_000933736.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 195000 195419 . - . ID=gene-AD39_RS03855;Name=atpC;gbkey=Gene;gene=atpC;gene_biotype=protein_coding;locus_tag=AD39_RS03855;old_locus_tag=AD39_4307 NZ_JJLH01000051.1 Protein Homology CDS 195000 195419 . - 0 ID=cds-WP_001251965.1;Parent=gene-AD39_RS03855;Dbxref=GenBank:WP_001251965.1;Name=WP_001251965.1;Ontology_term=GO:0015986,GO:0046933;gbkey=CDS;gene=atpC;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001251972.1;locus_tag=AD39_RS03855;product=F0F1 ATP synthase subunit epsilon;protein_id=WP_001251965.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 195440 196822 . - . ID=gene-AD39_RS03850;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;locus_tag=AD39_RS03850;old_locus_tag=AD39_4308 NZ_JJLH01000051.1 Protein Homology CDS 195440 196822 . - 0 ID=cds-WP_032287647.1;Parent=gene-AD39_RS03850;Dbxref=GenBank:WP_032287647.1;Name=WP_032287647.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpD;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017800291.1;locus_tag=AD39_RS03850;product=F0F1 ATP synthase subunit beta;protein_id=WP_032287647.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 196849 197712 . - . ID=gene-AD39_RS03845;Name=atpG;gbkey=Gene;gene=atpG;gene_biotype=protein_coding;locus_tag=AD39_RS03845;old_locus_tag=AD39_4309 NZ_JJLH01000051.1 Protein Homology CDS 196849 197712 . - 0 ID=cds-WP_000896498.1;Parent=gene-AD39_RS03845;Dbxref=GenBank:WP_000896498.1;Name=WP_000896498.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpG;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882764.1;locus_tag=AD39_RS03845;product=F0F1 ATP synthase subunit gamma;protein_id=WP_000896498.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 197763 199304 . - . ID=gene-AD39_RS03840;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;locus_tag=AD39_RS03840;old_locus_tag=AD39_4310 NZ_JJLH01000051.1 Protein Homology CDS 197763 199304 . - 0 ID=cds-WP_001176745.1;Parent=gene-AD39_RS03840;Dbxref=GenBank:WP_001176745.1;Name=WP_001176745.1;Ontology_term=GO:0015986,GO:0046933,GO:0045259;gbkey=CDS;gene=atpA;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001176751.1;locus_tag=AD39_RS03840;product=F0F1 ATP synthase subunit alpha;protein_id=WP_001176745.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 199317 199850 . - . ID=gene-AD39_RS03835;Name=atpH;gbkey=Gene;gene=atpH;gene_biotype=protein_coding;locus_tag=AD39_RS03835;old_locus_tag=AD39_4311 NZ_JJLH01000051.1 Protein Homology CDS 199317 199850 . - 0 ID=cds-WP_001288587.1;Parent=gene-AD39_RS03835;Dbxref=GenBank:WP_001288587.1;Name=WP_001288587.1;Ontology_term=GO:0015986,GO:0046933,GO:0016020;gbkey=CDS;gene=atpH;go_component=membrane|0016020||IEA;go_function=proton-transporting ATP synthase activity%2C rotational mechanism|0046933||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966593.1;locus_tag=AD39_RS03835;product=F0F1 ATP synthase subunit delta;protein_id=WP_001288587.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 199865 200335 . - . ID=gene-AD39_RS03830;Name=atpF;gbkey=Gene;gene=atpF;gene_biotype=protein_coding;locus_tag=AD39_RS03830;old_locus_tag=AD39_4312 NZ_JJLH01000051.1 Protein Homology CDS 199865 200335 . - 0 ID=cds-WP_001052219.1;Parent=gene-AD39_RS03830;Dbxref=GenBank:WP_001052219.1;Name=WP_001052219.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;gene=atpF;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001052215.1;locus_tag=AD39_RS03830;product=F0F1 ATP synthase subunit B;protein_id=WP_001052219.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 200397 200636 . - . ID=gene-AD39_RS03825;Name=atpE;gbkey=Gene;gene=atpE;gene_biotype=protein_coding;locus_tag=AD39_RS03825;old_locus_tag=AD39_4313 NZ_JJLH01000051.1 Protein Homology CDS 200397 200636 . - 0 ID=cds-WP_000429386.1;Parent=gene-AD39_RS03825;Dbxref=GenBank:WP_000429386.1;Name=WP_000429386.1;Ontology_term=GO:0015986,GO:0015078;gbkey=CDS;gene=atpE;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004246596.1;locus_tag=AD39_RS03825;product=F0F1 ATP synthase subunit C;protein_id=WP_000429386.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 200683 201498 . - . ID=gene-AD39_RS03820;Name=atpB;gbkey=Gene;gene=atpB;gene_biotype=protein_coding;locus_tag=AD39_RS03820;old_locus_tag=AD39_4314 NZ_JJLH01000051.1 Protein Homology CDS 200683 201498 . - 0 ID=cds-WP_000135625.1;Parent=gene-AD39_RS03820;Dbxref=GenBank:WP_000135625.1;Name=WP_000135625.1;Ontology_term=GO:0015986,GO:0015078,GO:0045259;gbkey=CDS;gene=atpB;go_component=proton-transporting ATP synthase complex|0045259||IEA;go_function=proton transmembrane transporter activity|0015078||IEA;go_process=proton motive force-driven ATP synthesis|0015986||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121454.1;locus_tag=AD39_RS03820;product=F0F1 ATP synthase subunit A;protein_id=WP_000135625.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 201507 201887 . - . ID=gene-AD39_RS0125525;Name=atpI;gbkey=Gene;gene=atpI;gene_biotype=protein_coding;locus_tag=AD39_RS0125525 NZ_JJLH01000051.1 Protein Homology CDS 201507 201887 . - 0 ID=cds-WP_000116695.1;Parent=gene-AD39_RS0125525;Dbxref=GenBank:WP_000116695.1;Name=WP_000116695.1;gbkey=CDS;gene=atpI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418195.2;locus_tag=AD39_RS0125525;product=F0F1 ATP synthase subunit I;protein_id=WP_000116695.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 202504 203127 . - . ID=gene-AD39_RS03815;Name=rsmG;gbkey=Gene;gene=rsmG;gene_biotype=protein_coding;locus_tag=AD39_RS03815;old_locus_tag=AD39_4316 NZ_JJLH01000051.1 Protein Homology CDS 202504 203127 . - 0 ID=cds-WP_000932839.1;Parent=gene-AD39_RS03815;Dbxref=GenBank:WP_000932839.1;Name=WP_000932839.1;Ontology_term=GO:0031167,GO:0046118,GO:0008168;gbkey=CDS;gene=rsmG;go_function=methyltransferase activity|0008168||IEA;go_process=rRNA methylation|0031167||IEA,7-methylguanosine biosynthetic process|0046118||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312709.1;locus_tag=AD39_RS03815;product=16S rRNA (guanine(527)-N(7))-methyltransferase RsmG;protein_id=WP_000932839.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 203191 205080 . - . ID=gene-AD39_RS03810;Name=mnmG;gbkey=Gene;gene=mnmG;gene_biotype=protein_coding;locus_tag=AD39_RS03810;old_locus_tag=AD39_4317 NZ_JJLH01000051.1 Protein Homology CDS 203191 205080 . - 0 ID=cds-WP_000499788.1;Parent=gene-AD39_RS03810;Dbxref=GenBank:WP_000499788.1;Name=WP_000499788.1;Ontology_term=GO:0002098,GO:0008033;gbkey=CDS;gene=mnmG;go_process=tRNA wobble uridine modification|0002098||IEA,tRNA processing|0008033||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000499793.1;locus_tag=AD39_RS03810;product=tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG;protein_id=WP_000499788.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 205459 205902 . - . ID=gene-AD39_RS03805;Name=mioC;gbkey=Gene;gene=mioC;gene_biotype=protein_coding;locus_tag=AD39_RS03805;old_locus_tag=AD39_4318 NZ_JJLH01000051.1 Protein Homology CDS 205459 205902 . - 0 ID=cds-WP_000763731.1;Parent=gene-AD39_RS03805;Dbxref=GenBank:WP_000763731.1;Name=WP_000763731.1;Ontology_term=GO:0010181;gbkey=CDS;gene=mioC;go_function=FMN binding|0010181||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312711.1;locus_tag=AD39_RS03805;product=FMN-binding protein MioC;protein_id=WP_000763731.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 205992 206450 . - . ID=gene-AD39_RS03800;Name=asnC;gbkey=Gene;gene=asnC;gene_biotype=protein_coding;locus_tag=AD39_RS03800;old_locus_tag=AD39_4319 NZ_JJLH01000051.1 Protein Homology CDS 205992 206450 . - 0 ID=cds-WP_000432970.1;Parent=gene-AD39_RS03800;Dbxref=GenBank:WP_000432970.1;Name=WP_000432970.1;Ontology_term=GO:0043565;gbkey=CDS;gene=asnC;go_function=sequence-specific DNA binding|0043565||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312712.1;locus_tag=AD39_RS03800;product=transcriptional regulator AsnC;protein_id=WP_000432970.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 206602 207594 . + . ID=gene-AD39_RS03795;Name=asnA;gbkey=Gene;gene=asnA;gene_biotype=protein_coding;locus_tag=AD39_RS03795;old_locus_tag=AD39_4320 NZ_JJLH01000051.1 Protein Homology CDS 206602 207594 . + 0 ID=cds-WP_032287648.1;Parent=gene-AD39_RS03795;Dbxref=GenBank:WP_032287648.1;Name=WP_032287648.1;Ontology_term=GO:0006529,GO:0004071,GO:0005737;gbkey=CDS;gene=asnA;go_component=cytoplasm|0005737||IEA;go_function=aspartate-ammonia ligase activity|0004071||IEA;go_process=asparagine biosynthetic process|0006529||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312713.1;locus_tag=AD39_RS03795;product=aspartate--ammonia ligase;protein_id=WP_032287648.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 207599 209050 . - . ID=gene-AD39_RS03790;Name=viaA;gbkey=Gene;gene=viaA;gene_biotype=protein_coding;locus_tag=AD39_RS03790;old_locus_tag=AD39_4321 NZ_JJLH01000051.1 Protein Homology CDS 207599 209050 . - 0 ID=cds-WP_000956642.1;Parent=gene-AD39_RS03790;Dbxref=GenBank:WP_000956642.1;Name=WP_000956642.1;gbkey=CDS;gene=viaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312714.1;locus_tag=AD39_RS03790;product=ATPase RavA stimulator ViaA;protein_id=WP_000956642.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 209044 210540 . - . ID=gene-AD39_RS03785;Name=ravA;gbkey=Gene;gene=ravA;gene_biotype=protein_coding;locus_tag=AD39_RS03785;old_locus_tag=AD39_4322 NZ_JJLH01000051.1 Protein Homology CDS 209044 210540 . - 0 ID=cds-WP_001299914.1;Parent=gene-AD39_RS03785;Dbxref=GenBank:WP_001299914.1;Name=WP_001299914.1;Ontology_term=GO:0005524,GO:0016887;gbkey=CDS;gene=ravA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418202.4;locus_tag=AD39_RS03785;product=ATPase RavA;protein_id=WP_001299914.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 210763 212631 . + . ID=gene-AD39_RS03780;Name=kup;gbkey=Gene;gene=kup;gene_biotype=protein_coding;locus_tag=AD39_RS03780;old_locus_tag=AD39_4323 NZ_JJLH01000051.1 Protein Homology CDS 210763 212631 . + 0 ID=cds-WP_004099092.1;Parent=gene-AD39_RS03780;Dbxref=GenBank:WP_004099092.1;Name=WP_004099092.1;Ontology_term=GO:0015079,GO:0016020;gbkey=CDS;gene=kup;go_component=membrane|0016020||IEA;go_function=potassium ion transmembrane transporter activity|0015079||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000102304.1;locus_tag=AD39_RS03780;product=low affinity potassium transporter Kup;protein_id=WP_004099092.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 212798 213217 . + . ID=gene-AD39_RS03775;Name=rbsD;gbkey=Gene;gene=rbsD;gene_biotype=protein_coding;locus_tag=AD39_RS03775;old_locus_tag=AD39_4324 NZ_JJLH01000051.1 Protein Homology CDS 212798 213217 . + 0 ID=cds-WP_001297694.1;Parent=gene-AD39_RS03775;Dbxref=GenBank:WP_001297694.1;Name=WP_001297694.1;Ontology_term=GO:0016872;gbkey=CDS;gene=rbsD;go_function=intramolecular lyase activity|0016872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709562.2;locus_tag=AD39_RS03775;product=D-ribose pyranase;protein_id=WP_001297694.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 213225 214730 . + . ID=gene-AD39_RS03770;Name=rbsA;gbkey=Gene;gene=rbsA;gene_biotype=protein_coding;locus_tag=AD39_RS03770;old_locus_tag=AD39_4325 NZ_JJLH01000051.1 Protein Homology CDS 213225 214730 . + 0 ID=cds-WP_000387753.1;Parent=gene-AD39_RS03770;Dbxref=GenBank:WP_000387753.1;Name=WP_000387753.1;Ontology_term=GO:0005524;gbkey=CDS;gene=rbsA;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418205.1;locus_tag=AD39_RS03770;product=ribose ABC transporter ATP-binding protein RbsA;protein_id=WP_000387753.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 214735 215700 . + . ID=gene-AD39_RS03765;Name=rbsC;gbkey=Gene;gene=rbsC;gene_biotype=protein_coding;locus_tag=AD39_RS03765;old_locus_tag=AD39_4326 NZ_JJLH01000051.1 Protein Homology CDS 214735 215700 . + 0 ID=cds-WP_000211858.1;Parent=gene-AD39_RS03765;Dbxref=GenBank:WP_000211858.1;Name=WP_000211858.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=rbsC;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002882531.1;locus_tag=AD39_RS03765;product=ribose ABC transporter permease;protein_id=WP_000211858.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 215725 216615 . + . ID=gene-AD39_RS03760;Name=rbsB;gbkey=Gene;gene=rbsB;gene_biotype=protein_coding;locus_tag=AD39_RS03760;old_locus_tag=AD39_4327 NZ_JJLH01000051.1 Protein Homology CDS 215725 216615 . + 0 ID=cds-WP_001056273.1;Parent=gene-AD39_RS03760;Dbxref=GenBank:WP_001056273.1;Name=WP_001056273.1;gbkey=CDS;gene=rbsB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312720.1;locus_tag=AD39_RS03760;product=ribose ABC transporter substrate-binding protein RbsB;protein_id=WP_001056273.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 216741 217670 . + . ID=gene-AD39_RS03755;Name=rbsK;gbkey=Gene;gene=rbsK;gene_biotype=protein_coding;locus_tag=AD39_RS03755;old_locus_tag=AD39_4328 NZ_JJLH01000051.1 Protein Homology CDS 216741 217670 . + 0 ID=cds-WP_001300603.1;Parent=gene-AD39_RS03755;Dbxref=GenBank:WP_001300603.1;Name=WP_001300603.1;Ontology_term=GO:0006014,GO:0004747;gbkey=CDS;gene=rbsK;go_function=ribokinase activity|0004747||IEA;go_process=D-ribose metabolic process|0006014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312721.1;locus_tag=AD39_RS03755;product=ribokinase;protein_id=WP_001300603.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 217674 218666 . + . ID=gene-AD39_RS03750;Name=rbsR;gbkey=Gene;gene=rbsR;gene_biotype=protein_coding;locus_tag=AD39_RS03750;old_locus_tag=AD39_4329 NZ_JJLH01000051.1 Protein Homology CDS 217674 218666 . + 0 ID=cds-WP_000224470.1;Parent=gene-AD39_RS03750;Dbxref=GenBank:WP_000224470.1;Name=WP_000224470.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=rbsR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312722.1;locus_tag=AD39_RS03750;product=ribose operon transcriptional repressor RbsR;protein_id=WP_000224470.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 218632 220059 . - . ID=gene-AD39_RS03745;Name=mdtD;gbkey=Gene;gene=mdtD;gene_biotype=protein_coding;locus_tag=AD39_RS03745;old_locus_tag=AD39_4330 NZ_JJLH01000051.1 Protein Homology CDS 218632 220059 . - 0 ID=cds-WP_001280887.1;Parent=gene-AD39_RS03745;Dbxref=GenBank:WP_001280887.1;Name=WP_001280887.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mdtD;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418210.1;locus_tag=AD39_RS03745;product=multidrug transporter subunit MdtD;protein_id=WP_001280887.1;transl_table=11 NZ_JJLH01000051.1 RefSeq gene 220082 220774 . - . ID=gene-AD39_RS03740;Name=yieP;gbkey=Gene;gene=yieP;gene_biotype=protein_coding;locus_tag=AD39_RS03740;old_locus_tag=AD39_4331 NZ_JJLH01000051.1 Protein Homology CDS 220082 220774 . - 0 ID=cds-WP_001131169.1;Parent=gene-AD39_RS03740;Dbxref=GenBank:WP_001131169.1;Name=WP_001131169.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;gene=yieP;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312724.2;locus_tag=AD39_RS03740;product=FadR/GntR family transcriptional regulator;protein_id=WP_001131169.1;transl_table=11 ##sequence-region NZ_JJLH01000052.1 1 2258 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000052.1 RefSeq region 1 2258 . + . ID=NZ_JJLH01000052.1:1..2258;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000052.1 RefSeq gene 47 1588 . + . ID=gene-AD39_RS03735;Name=AD39_RS03735;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS03735;old_locus_tag=AD39_4332 NZ_JJLH01000052.1 cmsearch rRNA 47 1588 . + . ID=rna-AD39_RS03735;Parent=gene-AD39_RS03735;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS03735;product=16S ribosomal RNA NZ_JJLH01000052.1 cmsearch exon 47 1588 . + . ID=exon-AD39_RS03735-1;Parent=rna-AD39_RS03735;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS03735;product=16S ribosomal RNA NZ_JJLH01000052.1 RefSeq gene 1657 1733 . + . ID=gene-AD39_RS03730;Name=AD39_RS03730;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS03730;old_locus_tag=AD39_4333 NZ_JJLH01000052.1 tRNAscan-SE tRNA 1657 1733 . + . ID=rna-AD39_RS03730;Parent=gene-AD39_RS03730;anticodon=(pos:1691..1693);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03730;product=tRNA-Ile NZ_JJLH01000052.1 tRNAscan-SE exon 1657 1733 . + . ID=exon-AD39_RS03730-1;Parent=rna-AD39_RS03730;anticodon=(pos:1691..1693);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03730;product=tRNA-Ile NZ_JJLH01000052.1 RefSeq gene 1776 1851 . + . ID=gene-AD39_RS03725;Name=AD39_RS03725;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS03725;old_locus_tag=AD39_4334 NZ_JJLH01000052.1 tRNAscan-SE tRNA 1776 1851 . + . ID=rna-AD39_RS03725;Parent=gene-AD39_RS03725;anticodon=(pos:1809..1811);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03725;product=tRNA-Ala NZ_JJLH01000052.1 tRNAscan-SE exon 1776 1851 . + . ID=exon-AD39_RS03725-1;Parent=rna-AD39_RS03725;anticodon=(pos:1809..1811);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03725;product=tRNA-Ala NZ_JJLH01000052.1 RefSeq gene 2035 2258 . + . ID=gene-AD39_RS0125530;Name=AD39_RS0125530;end_range=2258,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0125530;partial=true NZ_JJLH01000052.1 cmsearch rRNA 2035 2258 . + . ID=rna-AD39_RS0125530;Parent=gene-AD39_RS0125530;Dbxref=RFAM:RF02541;end_range=2258,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125530;partial=true;product=23S ribosomal RNA NZ_JJLH01000052.1 cmsearch exon 2035 2258 . + . ID=exon-AD39_RS0125530-1;Parent=rna-AD39_RS0125530;Dbxref=RFAM:RF02541;end_range=2258,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125530;partial=true;product=23S ribosomal RNA ##sequence-region NZ_JJLH01000053.1 1 1618 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000053.1 RefSeq region 1 1618 . + . ID=NZ_JJLH01000053.1:1..1618;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000053.1 RefSeq gene 190 265 . + . ID=gene-AD39_RS03720;Name=AD39_RS03720;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS03720;old_locus_tag=AD39_4335 NZ_JJLH01000053.1 tRNAscan-SE tRNA 190 265 . + . ID=rna-AD39_RS03720;Parent=gene-AD39_RS03720;anticodon=(pos:224..226);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03720;product=tRNA-Glu NZ_JJLH01000053.1 tRNAscan-SE exon 190 265 . + . ID=exon-AD39_RS03720-1;Parent=rna-AD39_RS03720;anticodon=(pos:224..226);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03720;product=tRNA-Glu NZ_JJLH01000053.1 RefSeq gene 452 1618 . + . ID=gene-AD39_RS03715;Name=AD39_RS03715;end_range=1618,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS03715;old_locus_tag=AD39_4336;partial=true NZ_JJLH01000053.1 cmsearch rRNA 452 1618 . + . ID=rna-AD39_RS03715;Parent=gene-AD39_RS03715;Dbxref=RFAM:RF02541;end_range=1618,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS03715;partial=true;product=23S ribosomal RNA NZ_JJLH01000053.1 cmsearch exon 452 1618 . + . ID=exon-AD39_RS03715-1;Parent=rna-AD39_RS03715;Dbxref=RFAM:RF02541;end_range=1618,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS03715;partial=true;product=23S ribosomal RNA ##sequence-region NZ_JJLH01000054.1 1 88215 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000054.1 RefSeq region 1 88215 . + . ID=NZ_JJLH01000054.1:1..88215;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000054.1 RefSeq gene 1 1151 . + . ID=gene-AD39_RS0125535;Name=AD39_RS0125535;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0125535;partial=true;start_range=.,1 NZ_JJLH01000054.1 cmsearch rRNA 1 1151 . + . ID=rna-AD39_RS0125535;Parent=gene-AD39_RS0125535;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125535;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_JJLH01000054.1 cmsearch exon 1 1151 . + . ID=exon-AD39_RS0125535-1;Parent=rna-AD39_RS0125535;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125535;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_JJLH01000054.1 RefSeq gene 1247 1362 . + . ID=gene-AD39_RS03710;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=AD39_RS03710;old_locus_tag=AD39_4338 NZ_JJLH01000054.1 cmsearch rRNA 1247 1362 . + . ID=rna-AD39_RS03710;Parent=gene-AD39_RS03710;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS03710;product=5S ribosomal RNA NZ_JJLH01000054.1 cmsearch exon 1247 1362 . + . ID=exon-AD39_RS03710-1;Parent=rna-AD39_RS03710;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS03710;product=5S ribosomal RNA NZ_JJLH01000054.1 RefSeq gene 1417 1493 . + . ID=gene-AD39_RS03705;Name=AD39_RS03705;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS03705;old_locus_tag=AD39_4339 NZ_JJLH01000054.1 tRNAscan-SE tRNA 1417 1493 . + . ID=rna-AD39_RS03705;Parent=gene-AD39_RS03705;anticodon=(pos:1451..1453);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03705;product=tRNA-Asp NZ_JJLH01000054.1 tRNAscan-SE exon 1417 1493 . + . ID=exon-AD39_RS03705-1;Parent=rna-AD39_RS03705;anticodon=(pos:1451..1453);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03705;product=tRNA-Asp NZ_JJLH01000054.1 RefSeq gene 1502 1577 . + . ID=gene-AD39_RS03700;Name=AD39_RS03700;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS03700;old_locus_tag=AD39_4340 NZ_JJLH01000054.1 tRNAscan-SE tRNA 1502 1577 . + . ID=rna-AD39_RS03700;Parent=gene-AD39_RS03700;anticodon=(pos:1535..1537);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03700;product=tRNA-Trp NZ_JJLH01000054.1 tRNAscan-SE exon 1502 1577 . + . ID=exon-AD39_RS03700-1;Parent=rna-AD39_RS03700;anticodon=(pos:1535..1537);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03700;product=tRNA-Trp NZ_JJLH01000054.1 RefSeq gene 1673 2512 . - . ID=gene-AD39_RS03695;Name=hdfR;gbkey=Gene;gene=hdfR;gene_biotype=protein_coding;locus_tag=AD39_RS03695;old_locus_tag=AD39_4341 NZ_JJLH01000054.1 Protein Homology CDS 1673 2512 . - 0 ID=cds-WP_001433921.1;Parent=gene-AD39_RS03695;Dbxref=GenBank:WP_001433921.1;Name=WP_001433921.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=hdfR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312725.1;locus_tag=AD39_RS03695;product=HTH-type transcriptional regulator HdfR;protein_id=WP_001433921.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 2631 2969 . + . ID=gene-AD39_RS03690;Name=maoP;gbkey=Gene;gene=maoP;gene_biotype=protein_coding;locus_tag=AD39_RS03690;old_locus_tag=AD39_4342 NZ_JJLH01000054.1 Protein Homology CDS 2631 2969 . + 0 ID=cds-WP_000841001.1;Parent=gene-AD39_RS03690;Dbxref=GenBank:WP_000841001.1;Name=WP_000841001.1;gbkey=CDS;gene=maoP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312726.1;locus_tag=AD39_RS03690;product=macrodomain Ori organization protein MaoP;protein_id=WP_000841001.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 2994 4514 . - . ID=gene-AD39_RS03685;Name=yifB;gbkey=Gene;gene=yifB;gene_biotype=protein_coding;locus_tag=AD39_RS03685;old_locus_tag=AD39_4343 NZ_JJLH01000054.1 Protein Homology CDS 2994 4514 . - 0 ID=cds-WP_000058976.1;Parent=gene-AD39_RS03685;Dbxref=GenBank:WP_000058976.1;Name=WP_000058976.1;Ontology_term=GO:0005524;gbkey=CDS;gene=yifB;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418214.2;locus_tag=AD39_RS03685;product=YifB family Mg chelatase-like AAA ATPase;protein_id=WP_000058976.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 4867 4965 . + . ID=gene-AD39_RS0125540;Name=ilvL;gbkey=Gene;gene=ilvL;gene_biotype=protein_coding;locus_tag=AD39_RS0125540 NZ_JJLH01000054.1 Protein Homology CDS 4867 4965 . + 0 ID=cds-WP_001311244.1;Parent=gene-AD39_RS0125540;Dbxref=GenBank:WP_001311244.1;Name=WP_001311244.1;Ontology_term=GO:0031556;gbkey=CDS;gene=ilvL;go_process=transcriptional attenuation by ribosome|0031556||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312728.1;locus_tag=AD39_RS0125540;product=ilv operon leader peptide;protein_id=WP_001311244.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 5052 5102 . + . ID=gene-AD39_RS29275;Name=ilvX;gbkey=Gene;gene=ilvX;gene_biotype=protein_coding;locus_tag=AD39_RS29275 NZ_JJLH01000054.1 Protein Homology CDS 5052 5102 . + 0 ID=cds-WP_001387183.1;Parent=gene-AD39_RS29275;Dbxref=GenBank:WP_001387183.1;Name=WP_001387183.1;gbkey=CDS;gene=ilvX;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791259.1;locus_tag=AD39_RS29275;product=peptide IlvX;protein_id=WP_001387183.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 5105 6751 . + . ID=gene-AD39_RS03680;Name=ilvG;gbkey=Gene;gene=ilvG;gene_biotype=protein_coding;locus_tag=AD39_RS03680;old_locus_tag=AD39_4344 NZ_JJLH01000054.1 Protein Homology CDS 5105 6751 . + 0 ID=cds-WP_001012621.1;Parent=gene-AD39_RS03680;Dbxref=GenBank:WP_001012621.1;Name=WP_001012621.1;Ontology_term=GO:0009082,GO:0000287,GO:0003984,GO:0030976,GO:0050660;gbkey=CDS;gene=ilvG;go_function=magnesium ion binding|0000287||IEA,acetolactate synthase activity|0003984||IEA,thiamine pyrophosphate binding|0030976||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001012636.1;locus_tag=AD39_RS03680;product=acetolactate synthase 2 catalytic subunit;protein_id=WP_001012621.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 6748 7011 . + . ID=gene-AD39_RS03675;Name=ilvM;gbkey=Gene;gene=ilvM;gene_biotype=protein_coding;locus_tag=AD39_RS03675;old_locus_tag=AD39_4345 NZ_JJLH01000054.1 Protein Homology CDS 6748 7011 . + 0 ID=cds-WP_000983255.1;Parent=gene-AD39_RS03675;Dbxref=GenBank:WP_000983255.1;Name=WP_000983255.1;gbkey=CDS;gene=ilvM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312730.1;locus_tag=AD39_RS03675;product=acetolactate synthase 2 small subunit;protein_id=WP_000983255.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 7031 7960 . + . ID=gene-AD39_RS03670;Name=ilvE;gbkey=Gene;gene=ilvE;gene_biotype=protein_coding;locus_tag=AD39_RS03670;old_locus_tag=AD39_4346 NZ_JJLH01000054.1 Protein Homology CDS 7031 7960 . + 0 ID=cds-WP_000208520.1;Parent=gene-AD39_RS03670;Dbxref=GenBank:WP_000208520.1;Name=WP_000208520.1;Ontology_term=GO:0009081,GO:0004084;gbkey=CDS;gene=ilvE;go_function=branched-chain-amino-acid transaminase activity|0004084||IEA;go_process=branched-chain amino acid metabolic process|0009081||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312731.1;locus_tag=AD39_RS03670;product=branched-chain-amino-acid transaminase;protein_id=WP_000208520.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 8025 9875 . + . ID=gene-AD39_RS03665;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;locus_tag=AD39_RS03665;old_locus_tag=AD39_4347 NZ_JJLH01000054.1 Protein Homology CDS 8025 9875 . + 0 ID=cds-WP_032283616.1;Parent=gene-AD39_RS03665;Dbxref=GenBank:WP_032283616.1;Name=WP_032283616.1;Ontology_term=GO:0009082,GO:0004160;gbkey=CDS;gene=ilvD;go_function=dihydroxy-acid dehydratase activity|0004160||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133366.1;locus_tag=AD39_RS03665;product=dihydroxy-acid dehydratase;protein_id=WP_032283616.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 9878 11422 . + . ID=gene-AD39_RS03660;Name=ilvA;gbkey=Gene;gene=ilvA;gene_biotype=protein_coding;locus_tag=AD39_RS03660;old_locus_tag=AD39_4348 NZ_JJLH01000054.1 Protein Homology CDS 9878 11422 . + 0 ID=cds-WP_021578857.1;Parent=gene-AD39_RS03660;Dbxref=GenBank:WP_021578857.1;Name=WP_021578857.1;Ontology_term=GO:0009097,GO:0004794;gbkey=CDS;gene=ilvA;go_function=threonine deaminase activity|0004794||IEA;go_process=isoleucine biosynthetic process|0009097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312733.1;locus_tag=AD39_RS03660;product=threonine ammonia-lyase%2C biosynthetic;protein_id=WP_021578857.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 11474 12367 . - . ID=gene-AD39_RS03655;Name=ilvY;gbkey=Gene;gene=ilvY;gene_biotype=protein_coding;locus_tag=AD39_RS03655;old_locus_tag=AD39_4349 NZ_JJLH01000054.1 Protein Homology CDS 11474 12367 . - 0 ID=cds-WP_000365791.1;Parent=gene-AD39_RS03655;Dbxref=GenBank:WP_000365791.1;Name=WP_000365791.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ilvY;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418221.1;locus_tag=AD39_RS03655;product=HTH-type transcriptional activator IlvY;protein_id=WP_000365791.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 12517 13992 . + . ID=gene-AD39_RS03650;Name=ilvC;gbkey=Gene;gene=ilvC;gene_biotype=protein_coding;locus_tag=AD39_RS03650;old_locus_tag=AD39_4350 NZ_JJLH01000054.1 Protein Homology CDS 12517 13992 . + 0 ID=cds-WP_032283618.1;Parent=gene-AD39_RS03650;Dbxref=GenBank:WP_032283618.1;Name=WP_032283618.1;Ontology_term=GO:0009082,GO:0004455;gbkey=CDS;gene=ilvC;go_function=ketol-acid reductoisomerase activity|0004455||IEA;go_process=branched-chain amino acid biosynthetic process|0009082||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133363.1;locus_tag=AD39_RS03650;product=ketol-acid reductoisomerase;protein_id=WP_032283618.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 14038 14319 . - . ID=gene-AD39_RS03645;Name=ppiC;gbkey=Gene;gene=ppiC;gene_biotype=protein_coding;locus_tag=AD39_RS03645;old_locus_tag=AD39_4351 NZ_JJLH01000054.1 Protein Homology CDS 14038 14319 . - 0 ID=cds-WP_001140251.1;Parent=gene-AD39_RS03645;Dbxref=GenBank:WP_001140251.1;Name=WP_001140251.1;gbkey=CDS;gene=ppiC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004097481.1;locus_tag=AD39_RS03645;product=peptidylprolyl isomerase PpiC;protein_id=WP_001140251.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 14514 14963 . - . ID=gene-AD39_RS03640;Name=AD39_RS03640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS03640;old_locus_tag=AD39_4352 NZ_JJLH01000054.1 Protein Homology CDS 14514 14963 . - 0 ID=cds-WP_000996686.1;Parent=gene-AD39_RS03640;Dbxref=GenBank:WP_000996686.1;Name=WP_000996686.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312737.1;locus_tag=AD39_RS03640;product=type II toxin-antitoxin system PemK/MazF family toxin;protein_id=WP_000996686.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 15180 17201 . + . ID=gene-AD39_RS03635;Name=rep;gbkey=Gene;gene=rep;gene_biotype=protein_coding;locus_tag=AD39_RS03635;old_locus_tag=AD39_4353 NZ_JJLH01000054.1 Protein Homology CDS 15180 17201 . + 0 ID=cds-WP_023155441.1;Parent=gene-AD39_RS03635;Dbxref=GenBank:WP_023155441.1;Name=WP_023155441.1;Ontology_term=GO:0006260,GO:0003678;gbkey=CDS;gene=rep;go_function=DNA helicase activity|0003678||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312738.1;locus_tag=AD39_RS03635;product=DNA helicase Rep;protein_id=WP_023155441.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 17248 18732 . - . ID=gene-AD39_RS03630;Name=gppA;gbkey=Gene;gene=gppA;gene_biotype=protein_coding;locus_tag=AD39_RS03630;old_locus_tag=AD39_4354 NZ_JJLH01000054.1 Protein Homology CDS 17248 18732 . - 0 ID=cds-WP_001295254.1;Parent=gene-AD39_RS03630;Dbxref=GenBank:WP_001295254.1;Name=WP_001295254.1;Ontology_term=GO:0015974,GO:0008894;gbkey=CDS;gene=gppA;go_function=guanosine-5'-triphosphate%2C3'-diphosphate diphosphatase activity|0008894||IEA;go_process=guanosine pentaphosphate catabolic process|0015974||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312739.1;locus_tag=AD39_RS03630;product=guanosine-5'-triphosphate%2C3'-diphosphate diphosphatase;protein_id=WP_001295254.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 18866 20131 . - . ID=gene-AD39_RS03625;Name=rhlB;gbkey=Gene;gene=rhlB;gene_biotype=protein_coding;locus_tag=AD39_RS03625;old_locus_tag=AD39_4355 NZ_JJLH01000054.1 Protein Homology CDS 18866 20131 . - 0 ID=cds-WP_000047499.1;Parent=gene-AD39_RS03625;Dbxref=GenBank:WP_000047499.1;Name=WP_000047499.1;Ontology_term=GO:0003676,GO:0003724,GO:0005524;gbkey=CDS;gene=rhlB;go_function=nucleic acid binding|0003676||IEA,RNA helicase activity|0003724||IEA,ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418227.1;locus_tag=AD39_RS03625;product=ATP-dependent RNA helicase RhlB;protein_id=WP_000047499.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 20262 20591 . + . ID=gene-AD39_RS03620;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=AD39_RS03620;old_locus_tag=AD39_4356 NZ_JJLH01000054.1 Protein Homology CDS 20262 20591 . + 0 ID=cds-WP_001350026.1;Parent=gene-AD39_RS03620;Dbxref=GenBank:WP_001350026.1;Name=WP_001350026.1;Ontology_term=GO:0006662,GO:0015035;gbkey=CDS;gene=trxA;go_function=protein-disulfide reductase activity|0015035||IEA;go_process=glycerol ether metabolic process|0006662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017375425.1;locus_tag=AD39_RS03620;product=thioredoxin TrxA;protein_id=WP_001350026.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 20732 20833 . + . ID=gene-AD39_RS0125545;Name=rhoL;gbkey=Gene;gene=rhoL;gene_biotype=protein_coding;locus_tag=AD39_RS0125545 NZ_JJLH01000054.1 Protein Homology CDS 20732 20833 . + 0 ID=cds-WP_001295255.1;Parent=gene-AD39_RS0125545;Dbxref=GenBank:WP_001295255.1;Name=WP_001295255.1;gbkey=CDS;gene=rhoL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312742.1;locus_tag=AD39_RS0125545;product=rho operon leader peptide RhoL;protein_id=WP_001295255.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 20918 22177 . + . ID=gene-AD39_RS03615;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=AD39_RS03615;old_locus_tag=AD39_4357 NZ_JJLH01000054.1 Protein Homology CDS 20918 22177 . + 0 ID=cds-WP_032198233.1;Parent=gene-AD39_RS03615;Dbxref=GenBank:WP_032198233.1;Name=WP_032198233.1;Ontology_term=GO:0006353,GO:0003723,GO:0005524,GO:0008186;gbkey=CDS;gene=rho;go_function=RNA binding|0003723||IEA,ATP binding|0005524||IEA,ATP-dependent activity%2C acting on RNA|0008186||IEA;go_process=DNA-templated transcription termination|0006353||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017492510.1;locus_tag=AD39_RS03615;product=transcription termination factor Rho;protein_id=WP_032198233.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 22417 23520 . + . ID=gene-AD39_RS03605;Name=wecA;gbkey=Gene;gene=wecA;gene_biotype=protein_coding;locus_tag=AD39_RS03605;old_locus_tag=AD39_4359 NZ_JJLH01000054.1 Protein Homology CDS 22417 23520 . + 0 ID=cds-WP_001050960.1;Parent=gene-AD39_RS03605;Dbxref=GenBank:WP_001050960.1;Name=WP_001050960.1;Ontology_term=GO:0009103,GO:0009246,GO:0000287,GO:0016780,GO:0030145,GO:0036380,GO:0009276,GO:0016020;gbkey=CDS;gene=wecA;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA,membrane|0016020||IEA;go_function=magnesium ion binding|0000287||IEA,phosphotransferase activity%2C for other substituted phosphate groups|0016780||IEA,manganese ion binding|0030145||IEA,UDP-N-acetylglucosamine-undecaprenyl-phosphate N-acetylglucosaminephosphotransferase activity|0036380||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA,enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418231.1;locus_tag=AD39_RS03605;product=UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase;protein_id=WP_001050960.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 23532 24578 . + . ID=gene-AD39_RS03600;Name=wzzE;gbkey=Gene;gene=wzzE;gene_biotype=protein_coding;locus_tag=AD39_RS03600;old_locus_tag=AD39_4360 NZ_JJLH01000054.1 Protein Homology CDS 23532 24578 . + 0 ID=cds-WP_001299252.1;Parent=gene-AD39_RS03600;Dbxref=GenBank:WP_001299252.1;Name=WP_001299252.1;Ontology_term=GO:0009103,GO:0009246,GO:0016020;gbkey=CDS;gene=wzzE;go_component=membrane|0016020||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA,enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709589.2;locus_tag=AD39_RS03600;product=ECA polysaccharide chain length modulation protein;protein_id=WP_001299252.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 24634 25764 . + . ID=gene-AD39_RS03595;Name=wecB;gbkey=Gene;gene=wecB;gene_biotype=protein_coding;locus_tag=AD39_RS03595;old_locus_tag=AD39_4361 NZ_JJLH01000054.1 Protein Homology CDS 24634 25764 . + 0 ID=cds-WP_000866670.1;Parent=gene-AD39_RS03595;Dbxref=GenBank:WP_000866670.1;Name=WP_000866670.1;Ontology_term=GO:0008761;gbkey=CDS;gene=wecB;go_function=UDP-N-acetylglucosamine 2-epimerase activity|0008761||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026253.1;locus_tag=AD39_RS03595;product=non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase;protein_id=WP_000866670.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 25761 27023 . + . ID=gene-AD39_RS03590;Name=wecC;gbkey=Gene;gene=wecC;gene_biotype=protein_coding;locus_tag=AD39_RS03590;old_locus_tag=AD39_4362 NZ_JJLH01000054.1 Protein Homology CDS 25761 27023 . + 0 ID=cds-WP_000006625.1;Parent=gene-AD39_RS03590;Dbxref=GenBank:WP_000006625.1;Name=WP_000006625.1;Ontology_term=GO:0009246,GO:0051287,GO:0089714;gbkey=CDS;gene=wecC;go_function=NAD binding|0051287||IEA,UDP-N-acetyl-D-mannosamine dehydrogenase activity|0089714||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312747.1;locus_tag=AD39_RS03590;product=UDP-N-acetyl-D-mannosamine dehydrogenase;protein_id=WP_000006625.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 27023 28090 . + . ID=gene-AD39_RS03585;Name=rffG;gbkey=Gene;gene=rffG;gene_biotype=protein_coding;locus_tag=AD39_RS03585;old_locus_tag=AD39_4363 NZ_JJLH01000054.1 Protein Homology CDS 27023 28090 . + 0 ID=cds-WP_001226604.1;Parent=gene-AD39_RS03585;Dbxref=GenBank:WP_001226604.1;Name=WP_001226604.1;Ontology_term=GO:0009225,GO:0008460;gbkey=CDS;gene=rffG;go_function=dTDP-glucose 4%2C6-dehydratase activity|0008460||IEA;go_process=nucleotide-sugar metabolic process|0009225||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709592.1;locus_tag=AD39_RS03585;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_001226604.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 28109 28990 . + . ID=gene-AD39_RS03580;Name=rfbA;gbkey=Gene;gene=rfbA;gene_biotype=protein_coding;locus_tag=AD39_RS03580;old_locus_tag=AD39_4364 NZ_JJLH01000054.1 Protein Homology CDS 28109 28990 . + 0 ID=cds-WP_000676056.1;Parent=gene-AD39_RS03580;Dbxref=GenBank:WP_000676056.1;Name=WP_000676056.1;Ontology_term=GO:0000271,GO:0019305,GO:0008879;gbkey=CDS;gene=rfbA;go_function=glucose-1-phosphate thymidylyltransferase activity|0008879||IEA;go_process=polysaccharide biosynthetic process|0000271||IEA,dTDP-rhamnose biosynthetic process|0019305||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133346.1;locus_tag=AD39_RS03580;product=glucose-1-phosphate thymidylyltransferase RfbA;protein_id=WP_000676056.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 28968 29642 . + . ID=gene-AD39_RS03575;Name=rffC;gbkey=Gene;gene=rffC;gene_biotype=protein_coding;gene_synonym=wecD;locus_tag=AD39_RS03575;old_locus_tag=AD39_4365 NZ_JJLH01000054.1 Protein Homology CDS 28968 29642 . + 0 ID=cds-WP_001145196.1;Parent=gene-AD39_RS03575;Dbxref=GenBank:WP_001145196.1;Name=WP_001145196.1;Ontology_term=GO:0008080;gbkey=CDS;gene=rffC;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026256.2;locus_tag=AD39_RS03575;product=dTDP-4-amino-4%2C6-dideoxy-D-galactose acyltransferase;protein_id=WP_001145196.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 29647 30777 . + . ID=gene-AD39_RS03570;Name=rffA;gbkey=Gene;gene=rffA;gene_biotype=protein_coding;gene_synonym=fcnA,wecE;locus_tag=AD39_RS03570;old_locus_tag=AD39_4366 NZ_JJLH01000054.1 Protein Homology CDS 29647 30777 . + 0 ID=cds-WP_000612044.1;Parent=gene-AD39_RS03570;Dbxref=GenBank:WP_000612044.1;Name=WP_000612044.1;Ontology_term=GO:0009246,GO:0019180;gbkey=CDS;gene=rffA;go_function=dTDP-4-amino-4%2C6-dideoxygalactose transaminase activity|0019180||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418238.1;locus_tag=AD39_RS03570;product=dTDP-4-amino-4%2C6-dideoxygalactose transaminase;protein_id=WP_000612044.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 30779 32029 . + . ID=gene-AD39_RS03565;Name=wzxE;gbkey=Gene;gene=wzxE;gene_biotype=protein_coding;locus_tag=AD39_RS03565;old_locus_tag=AD39_4367 NZ_JJLH01000054.1 Protein Homology CDS 30779 32029 . + 0 ID=cds-WP_000050260.1;Parent=gene-AD39_RS03565;Dbxref=GenBank:WP_000050260.1;Name=WP_000050260.1;Ontology_term=GO:0009246,GO:0016020;gbkey=CDS;gene=wzxE;go_component=membrane|0016020||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418239.1;locus_tag=AD39_RS03565;product=lipid III flippase WzxE;protein_id=WP_000050260.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 32026 33105 . + . ID=gene-AD39_RS03560;Name=rffT;gbkey=Gene;gene=rffT;gene_biotype=protein_coding;gene_synonym=wecF;locus_tag=AD39_RS03560;old_locus_tag=AD39_4368 NZ_JJLH01000054.1 Protein Homology CDS 32026 33105 . + 0 ID=cds-WP_000217240.1;Parent=gene-AD39_RS03560;Dbxref=GenBank:WP_000217240.1;Name=WP_000217240.1;gbkey=CDS;gene=rffT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709597.1;locus_tag=AD39_RS03560;product=TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase;protein_id=WP_000217240.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 33102 34454 . + . ID=gene-AD39_RS03555;Name=wzyE;gbkey=Gene;gene=wzyE;gene_biotype=protein_coding;locus_tag=AD39_RS03555;old_locus_tag=AD39_4369 NZ_JJLH01000054.1 Protein Homology CDS 33102 34454 . + 0 ID=cds-WP_000055132.1;Parent=gene-AD39_RS03555;Dbxref=GenBank:WP_000055132.1;Name=WP_000055132.1;Ontology_term=GO:0009246,GO:0016020;gbkey=CDS;gene=wzyE;go_component=membrane|0016020||IEA;go_process=enterobacterial common antigen biosynthetic process|0009246||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312754.1;locus_tag=AD39_RS03555;product=ECA oligosaccharide polymerase;protein_id=WP_000055132.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 34457 35197 . + . ID=gene-AD39_RS03550;Name=wecG;gbkey=Gene;gene=wecG;gene_biotype=protein_coding;locus_tag=AD39_RS03550;old_locus_tag=AD39_4370 NZ_JJLH01000054.1 Protein Homology CDS 34457 35197 . + 0 ID=cds-WP_001064038.1;Parent=gene-AD39_RS03550;Dbxref=GenBank:WP_001064038.1;Name=WP_001064038.1;Ontology_term=GO:0047241;gbkey=CDS;gene=wecG;go_function=lipopolysaccharide N-acetylmannosaminouronosyltransferase activity|0047241||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418242.1;locus_tag=AD39_RS03550;product=lipopolysaccharide N-acetylmannosaminouronosyltransferase;protein_id=WP_001064038.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 35388 36779 . + . ID=gene-AD39_RS03545;Name=thrP;gbkey=Gene;gene=thrP;gene_biotype=protein_coding;gene_synonym=yifK;locus_tag=AD39_RS03545;old_locus_tag=AD39_4371 NZ_JJLH01000054.1 Protein Homology CDS 35388 36779 . + 0 ID=cds-WP_032283622.1;Parent=gene-AD39_RS03545;Dbxref=GenBank:WP_032283622.1;Name=WP_032283622.1;Ontology_term=GO:0015194,GO:0015195;gbkey=CDS;gene=thrP;go_function=L-serine transmembrane transporter activity|0015194||IEA,L-threonine transmembrane transporter activity|0015195||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312756.1;locus_tag=AD39_RS03545;product=bifunctional threonine/serine APC transporter ThrP;protein_id=WP_032283622.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 36882 36958 . + . ID=gene-AD39_RS03540;Name=AD39_RS03540;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS03540;old_locus_tag=AD39_4372 NZ_JJLH01000054.1 tRNAscan-SE tRNA 36882 36958 . + . ID=rna-AD39_RS03540;Parent=gene-AD39_RS03540;anticodon=(pos:36916..36918);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03540;product=tRNA-Arg NZ_JJLH01000054.1 tRNAscan-SE exon 36882 36958 . + . ID=exon-AD39_RS03540-1;Parent=rna-AD39_RS03540;anticodon=(pos:36916..36918);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03540;product=tRNA-Arg NZ_JJLH01000054.1 RefSeq gene 37017 37092 . + . ID=gene-AD39_RS03535;Name=AD39_RS03535;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS03535;old_locus_tag=AD39_4373 NZ_JJLH01000054.1 tRNAscan-SE tRNA 37017 37092 . + . ID=rna-AD39_RS03535;Parent=gene-AD39_RS03535;anticodon=(pos:37050..37052);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03535;product=tRNA-His NZ_JJLH01000054.1 tRNAscan-SE exon 37017 37092 . + . ID=exon-AD39_RS03535-1;Parent=rna-AD39_RS03535;anticodon=(pos:37050..37052);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03535;product=tRNA-His NZ_JJLH01000054.1 RefSeq gene 37113 37199 . + . ID=gene-AD39_RS03530;Name=AD39_RS03530;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS03530;old_locus_tag=AD39_4374 NZ_JJLH01000054.1 tRNAscan-SE tRNA 37113 37199 . + . ID=rna-AD39_RS03530;Parent=gene-AD39_RS03530;anticodon=(pos:37147..37149);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03530;product=tRNA-Leu NZ_JJLH01000054.1 tRNAscan-SE exon 37113 37199 . + . ID=exon-AD39_RS03530-1;Parent=rna-AD39_RS03530;anticodon=(pos:37147..37149);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03530;product=tRNA-Leu NZ_JJLH01000054.1 RefSeq gene 37242 37318 . + . ID=gene-AD39_RS03525;Name=AD39_RS03525;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS03525;old_locus_tag=AD39_4375 NZ_JJLH01000054.1 tRNAscan-SE tRNA 37242 37318 . + . ID=rna-AD39_RS03525;Parent=gene-AD39_RS03525;anticodon=(pos:37276..37278);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03525;product=tRNA-Pro NZ_JJLH01000054.1 tRNAscan-SE exon 37242 37318 . + . ID=exon-AD39_RS03525-1;Parent=rna-AD39_RS03525;anticodon=(pos:37276..37278);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03525;product=tRNA-Pro NZ_JJLH01000054.1 RefSeq gene 37465 38700 . + . ID=gene-AD39_RS03520;Name=aslB;gbkey=Gene;gene=aslB;gene_biotype=protein_coding;locus_tag=AD39_RS03520;old_locus_tag=AD39_4376 NZ_JJLH01000054.1 Protein Homology CDS 37465 38700 . + 0 ID=cds-WP_000941530.1;Parent=gene-AD39_RS03520;Dbxref=GenBank:WP_000941530.1;Name=WP_000941530.1;Ontology_term=GO:0018209,GO:0046500,GO:0016491,GO:0051539;gbkey=CDS;gene=aslB;go_function=oxidoreductase activity|0016491||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;go_process=peptidyl-serine modification|0018209||IEA,S-adenosylmethionine metabolic process|0046500||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312757.1;locus_tag=AD39_RS03520;product=anaerobic sulfatase maturase;protein_id=WP_000941530.1;transl_table=11 NZ_JJLH01000054.1 RefSeq pseudogene 38808 38945 . - . ID=gene-AD39_RS29515;Name=AD39_RS29515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29515;old_locus_tag=AD39_4377;partial=true;pseudo=true;start_range=.,38808 NZ_JJLH01000054.1 Protein Homology CDS 38808 38945 . - 0 ID=cds-AD39_RS29515;Parent=gene-AD39_RS29515;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312758.1;locus_tag=AD39_RS29515;partial=true;product=arylsulfatase;pseudo=true;start_range=.,38808;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 39624 40820 . - . ID=gene-AD39_RS03510;Name=hemY;gbkey=Gene;gene=hemY;gene_biotype=protein_coding;locus_tag=AD39_RS03510;old_locus_tag=AD39_4379 NZ_JJLH01000054.1 Protein Homology CDS 39624 40820 . - 0 ID=cds-WP_032141655.1;Parent=gene-AD39_RS03510;Dbxref=GenBank:WP_032141655.1;Name=WP_032141655.1;Ontology_term=GO:0042168,GO:0005515,GO:0016020;gbkey=CDS;gene=hemY;go_component=membrane|0016020||IEA;go_function=protein binding|0005515||IEA;go_process=heme metabolic process|0042168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312759.1;locus_tag=AD39_RS03510;product=protoheme IX biogenesis protein HemY;protein_id=WP_032141655.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 40823 42040 . - . ID=gene-AD39_RS03505;Name=hemX;gbkey=Gene;gene=hemX;gene_biotype=protein_coding;locus_tag=AD39_RS03505;old_locus_tag=AD39_4380 NZ_JJLH01000054.1 Protein Homology CDS 40823 42040 . - 0 ID=cds-WP_000139043.1;Parent=gene-AD39_RS03505;Dbxref=GenBank:WP_000139043.1;Name=WP_000139043.1;gbkey=CDS;gene=hemX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709605.1;locus_tag=AD39_RS03505;product=uroporphyrinogen-III C-methyltransferase;protein_id=WP_000139043.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 42062 42802 . - . ID=gene-AD39_RS03500;Name=hemD;gbkey=Gene;gene=hemD;gene_biotype=protein_coding;locus_tag=AD39_RS03500;old_locus_tag=AD39_4381 NZ_JJLH01000054.1 Protein Homology CDS 42062 42802 . - 0 ID=cds-WP_000026061.1;Parent=gene-AD39_RS03500;Dbxref=GenBank:WP_000026061.1;Name=WP_000026061.1;Ontology_term=GO:0006780,GO:0004852;gbkey=CDS;gene=hemD;go_function=uroporphyrinogen-III synthase activity|0004852||IEA;go_process=uroporphyrinogen III biosynthetic process|0006780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312761.1;locus_tag=AD39_RS03500;product=uroporphyrinogen-III synthase;protein_id=WP_000026061.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 42799 43740 . - . ID=gene-AD39_RS03495;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=AD39_RS03495;old_locus_tag=AD39_4382 NZ_JJLH01000054.1 Protein Homology CDS 42799 43740 . - 0 ID=cds-WP_001355831.1;Parent=gene-AD39_RS03495;Dbxref=GenBank:WP_001355831.1;Name=WP_001355831.1;Ontology_term=GO:0033014,GO:0004418;gbkey=CDS;gene=hemC;go_function=hydroxymethylbilane synthase activity|0004418||IEA;go_process=tetrapyrrole biosynthetic process|0033014||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026260.1;locus_tag=AD39_RS03495;product=hydroxymethylbilane synthase;protein_id=WP_001355831.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 44127 46673 . + . ID=gene-AD39_RS03490;Name=cyaA;gbkey=Gene;gene=cyaA;gene_biotype=protein_coding;locus_tag=AD39_RS03490;old_locus_tag=AD39_4383 NZ_JJLH01000054.1 Protein Homology CDS 44127 46673 . + 0 ID=cds-WP_000281680.1;Parent=gene-AD39_RS03490;Dbxref=GenBank:WP_000281680.1;Name=WP_000281680.1;Ontology_term=GO:0006171,GO:0004016;gbkey=CDS;gene=cyaA;go_function=adenylate cyclase activity|0004016||IEA;go_process=cAMP biosynthetic process|0006171||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312763.1;locus_tag=AD39_RS03490;product=class I adenylate cyclase;protein_id=WP_000281680.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 46713 47033 . - . ID=gene-AD39_RS03485;Name=cyaY;gbkey=Gene;gene=cyaY;gene_biotype=protein_coding;locus_tag=AD39_RS03485;old_locus_tag=AD39_4384 NZ_JJLH01000054.1 Protein Homology CDS 46713 47033 . - 0 ID=cds-WP_000999947.1;Parent=gene-AD39_RS03485;Dbxref=GenBank:WP_000999947.1;Name=WP_000999947.1;Ontology_term=GO:0016226,GO:0005506;gbkey=CDS;gene=cyaY;go_function=iron ion binding|0005506||IEA;go_process=iron-sulfur cluster assembly|0016226||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000999950.1;locus_tag=AD39_RS03485;product=iron donor protein CyaY;protein_id=WP_000999947.1;transl_table=11 NZ_JJLH01000054.1 RefSeq pseudogene 47159 47337 . - . ID=gene-AD39_RS29855;Name=AD39_RS29855;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29855;partial=true;pseudo=true;start_range=.,47159 NZ_JJLH01000054.1 Protein Homology CDS 47159 47337 . - 0 ID=cds-AD39_RS29855;Parent=gene-AD39_RS29855;Note=frameshifted%3B internal stop%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000580503.1;locus_tag=AD39_RS29855;partial=true;product=DKNYY family protein;pseudo=true;start_range=.,47159;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 47496 47699 . + . ID=gene-AD39_RS03480;Name=lptM;gbkey=Gene;gene=lptM;gene_biotype=protein_coding;gene_synonym=yifL;locus_tag=AD39_RS03480;old_locus_tag=AD39_4386 NZ_JJLH01000054.1 Protein Homology CDS 47496 47699 . + 0 ID=cds-WP_000799889.1;Parent=gene-AD39_RS03480;Dbxref=GenBank:WP_000799889.1;Name=WP_000799889.1;gbkey=CDS;gene=lptM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709615.1;locus_tag=AD39_RS03480;product=LPS translocon maturation chaperone LptM;protein_id=WP_000799889.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 47736 48560 . + . ID=gene-AD39_RS03475;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=AD39_RS03475;old_locus_tag=AD39_4387 NZ_JJLH01000054.1 Protein Homology CDS 47736 48560 . + 0 ID=cds-WP_001160654.1;Parent=gene-AD39_RS03475;Dbxref=GenBank:WP_001160654.1;Name=WP_001160654.1;Ontology_term=GO:0009089,GO:0008837;gbkey=CDS;gene=dapF;go_function=diaminopimelate epimerase activity|0008837||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133314.1;locus_tag=AD39_RS03475;product=diaminopimelate epimerase;protein_id=WP_001160654.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 48557 49264 . + . ID=gene-AD39_RS03470;Name=yigA;gbkey=Gene;gene=yigA;gene_biotype=protein_coding;locus_tag=AD39_RS03470;old_locus_tag=AD39_4388 NZ_JJLH01000054.1 Protein Homology CDS 48557 49264 . + 0 ID=cds-WP_000812796.1;Parent=gene-AD39_RS03470;Dbxref=GenBank:WP_000812796.1;Name=WP_000812796.1;gbkey=CDS;gene=yigA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418255.1;locus_tag=AD39_RS03470;product=DUF484 domain-containing protein;protein_id=WP_000812796.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 49261 50157 . + . ID=gene-AD39_RS03465;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=AD39_RS03465;old_locus_tag=AD39_4389 NZ_JJLH01000054.1 Protein Homology CDS 49261 50157 . + 0 ID=cds-WP_000130691.1;Parent=gene-AD39_RS03465;Dbxref=GenBank:WP_000130691.1;Name=WP_000130691.1;Ontology_term=GO:0006310,GO:0007059,GO:0015074,GO:0051301,GO:0003677;gbkey=CDS;gene=xerC;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,chromosome segregation|0007059||IEA,DNA integration|0015074||IEA,cell division|0051301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418256.1;locus_tag=AD39_RS03465;product=tyrosine recombinase XerC;protein_id=WP_000130691.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 50157 50873 . + . ID=gene-AD39_RS03460;Name=yigB;gbkey=Gene;gene=yigB;gene_biotype=protein_coding;locus_tag=AD39_RS03460;old_locus_tag=AD39_4390 NZ_JJLH01000054.1 Protein Homology CDS 50157 50873 . + 0 ID=cds-WP_001213584.1;Parent=gene-AD39_RS03460;Dbxref=GenBank:WP_001213584.1;Name=WP_001213584.1;gbkey=CDS;gene=yigB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418257.1;locus_tag=AD39_RS03460;product=5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB;protein_id=WP_001213584.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 50957 53119 . + . ID=gene-AD39_RS03455;Name=uvrD;gbkey=Gene;gene=uvrD;gene_biotype=protein_coding;gene_synonym=mutU,recL;locus_tag=AD39_RS03455;old_locus_tag=AD39_4391 NZ_JJLH01000054.1 Protein Homology CDS 50957 53119 . + 0 ID=cds-WP_000383407.1;Parent=gene-AD39_RS03455;Dbxref=GenBank:WP_000383407.1;Name=WP_000383407.1;Ontology_term=GO:0006260,GO:0003677,GO:0003678,GO:0005524,GO:0016787;gbkey=CDS;gene=uvrD;go_function=DNA binding|0003677||IEA,DNA helicase activity|0003678||IEA,ATP binding|0005524||IEA,hydrolase activity|0016787||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312770.1;locus_tag=AD39_RS03455;product=DNA helicase II;protein_id=WP_000383407.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 53164 54066 . - . ID=gene-AD39_RS03450;Name=AD39_RS03450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS03450;old_locus_tag=AD39_4392 NZ_JJLH01000054.1 Protein Homology CDS 53164 54066 . - 0 ID=cds-WP_000754468.1;Parent=gene-AD39_RS03450;Dbxref=GenBank:WP_000754468.1;Name=WP_000754468.1;Ontology_term=GO:0003824;gbkey=CDS;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312771.1;locus_tag=AD39_RS03450;product=SAM hydrolase/SAM-dependent halogenase family protein;protein_id=WP_000754468.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 54322 54378 . + . ID=gene-AD39_RS29860;Name=ysgD;gbkey=Gene;gene=ysgD;gene_biotype=protein_coding;locus_tag=AD39_RS29860 NZ_JJLH01000054.1 Protein Homology CDS 54322 54378 . + 0 ID=cds-WP_212591408.1;Parent=gene-AD39_RS29860;Dbxref=GenBank:WP_212591408.1;Name=WP_212591408.1;gbkey=CDS;gene=ysgD;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051213.1;locus_tag=AD39_RS29860;product=YsgD/CorL family protein;protein_id=WP_212591408.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 54530 55480 . + . ID=gene-AD39_RS03445;Name=corA;gbkey=Gene;gene=corA;gene_biotype=protein_coding;locus_tag=AD39_RS03445;old_locus_tag=AD39_4393 NZ_JJLH01000054.1 Protein Homology CDS 54530 55480 . + 0 ID=cds-WP_000947159.1;Parent=gene-AD39_RS03445;Dbxref=GenBank:WP_000947159.1;Name=WP_000947159.1;Ontology_term=GO:0006824,GO:0015693,GO:0015087,GO:0015095,GO:0016020;gbkey=CDS;gene=corA;go_component=membrane|0016020||IEA;go_function=cobalt ion transmembrane transporter activity|0015087||IEA,magnesium ion transmembrane transporter activity|0015095||IEA;go_process=cobalt ion transport|0006824||IEA,magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000947142.1;locus_tag=AD39_RS03445;product=magnesium/cobalt transporter CorA;protein_id=WP_000947159.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 55523 55903 . - . ID=gene-AD39_RS03440;Name=yigF;gbkey=Gene;gene=yigF;gene_biotype=protein_coding;locus_tag=AD39_RS03440;old_locus_tag=AD39_4394 NZ_JJLH01000054.1 Protein Homology CDS 55523 55903 . - 0 ID=cds-WP_000032581.1;Parent=gene-AD39_RS03440;Dbxref=GenBank:WP_000032581.1;Name=WP_000032581.1;gbkey=CDS;gene=yigF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418261.1;locus_tag=AD39_RS03440;product=DUF2628 domain-containing protein;protein_id=WP_000032581.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 55917 56297 . - . ID=gene-AD39_RS0125550;Name=yigG;gbkey=Gene;gene=yigG;gene_biotype=protein_coding;locus_tag=AD39_RS0125550 NZ_JJLH01000054.1 Protein Homology CDS 55917 56297 . - 0 ID=cds-WP_001399535.1;Parent=gene-AD39_RS0125550;Dbxref=GenBank:WP_001399535.1;Name=WP_001399535.1;gbkey=CDS;gene=yigG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418262.2;locus_tag=AD39_RS0125550;product=protein YigG;protein_id=WP_001399535.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 56392 57282 . - . ID=gene-AD39_RS03435;Name=rarD;gbkey=Gene;gene=rarD;gene_biotype=protein_coding;locus_tag=AD39_RS03435;old_locus_tag=AD39_4396 NZ_JJLH01000054.1 Protein Homology CDS 56392 57282 . - 0 ID=cds-WP_000339104.1;Parent=gene-AD39_RS03435;Dbxref=GenBank:WP_000339104.1;Name=WP_000339104.1;Ontology_term=GO:0016020;gbkey=CDS;gene=rarD;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026262.1;locus_tag=AD39_RS03435;product=EamA family transporter RarD;protein_id=WP_000339104.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 57334 57801 . - . ID=gene-AD39_RS03430;Name=yigI;gbkey=Gene;gene=yigI;gene_biotype=protein_coding;locus_tag=AD39_RS03430;old_locus_tag=AD39_4397 NZ_JJLH01000054.1 Protein Homology CDS 57334 57801 . - 0 ID=cds-WP_001277142.1;Parent=gene-AD39_RS03430;Dbxref=GenBank:WP_001277142.1;Name=WP_001277142.1;gbkey=CDS;gene=yigI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312777.2;locus_tag=AD39_RS03430;product=acyl-CoA thioesterase YigI;protein_id=WP_001277142.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 57966 58835 . + . ID=gene-AD39_RS03425;Name=pldA;gbkey=Gene;gene=pldA;gene_biotype=protein_coding;locus_tag=AD39_RS03425;old_locus_tag=AD39_4398 NZ_JJLH01000054.1 Protein Homology CDS 57966 58835 . + 0 ID=cds-WP_001259700.1;Parent=gene-AD39_RS03425;Dbxref=GenBank:WP_001259700.1;Name=WP_001259700.1;Ontology_term=GO:0006629,GO:0004620;gbkey=CDS;gene=pldA;go_function=phospholipase activity|0004620||IEA;go_process=lipid metabolic process|0006629||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312778.1;locus_tag=AD39_RS03425;product=phospholipase A;protein_id=WP_001259700.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 58968 60797 . + . ID=gene-AD39_RS03420;Name=recQ;gbkey=Gene;gene=recQ;gene_biotype=protein_coding;locus_tag=AD39_RS03420;old_locus_tag=AD39_4399 NZ_JJLH01000054.1 Protein Homology CDS 58968 60797 . + 0 ID=cds-WP_001346040.1;Parent=gene-AD39_RS03420;Dbxref=GenBank:WP_001346040.1;Name=WP_001346040.1;Ontology_term=GO:0006310,GO:0003678;gbkey=CDS;gene=recQ;go_function=DNA helicase activity|0003678||IEA;go_process=DNA recombination|0006310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026263.3;locus_tag=AD39_RS03420;product=ATP-dependent DNA helicase RecQ;protein_id=WP_001346040.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 60861 61481 . + . ID=gene-AD39_RS03415;Name=rhtC;gbkey=Gene;gene=rhtC;gene_biotype=protein_coding;locus_tag=AD39_RS03415;old_locus_tag=AD39_4400 NZ_JJLH01000054.1 Protein Homology CDS 60861 61481 . + 0 ID=cds-WP_000928824.1;Parent=gene-AD39_RS03415;Dbxref=GenBank:WP_000928824.1;Name=WP_000928824.1;Ontology_term=GO:0006865;gbkey=CDS;gene=rhtC;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312780.1;locus_tag=AD39_RS03415;product=threonine export protein RhtC;protein_id=WP_000928824.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 61543 62163 . - . ID=gene-AD39_RS03410;Name=rhtB;gbkey=Gene;gene=rhtB;gene_biotype=protein_coding;locus_tag=AD39_RS03410;old_locus_tag=AD39_4401 NZ_JJLH01000054.1 Protein Homology CDS 61543 62163 . - 0 ID=cds-WP_000171710.1;Parent=gene-AD39_RS03410;Dbxref=GenBank:WP_000171710.1;Name=WP_000171710.1;Ontology_term=GO:0006865,GO:0016020;gbkey=CDS;gene=rhtB;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312781.1;locus_tag=AD39_RS03410;product=homoserine/homoserine lactone efflux protein;protein_id=WP_000171710.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 62274 63296 . + . ID=gene-AD39_RS03405;Name=pldB;gbkey=Gene;gene=pldB;gene_biotype=protein_coding;locus_tag=AD39_RS03405;old_locus_tag=AD39_4402 NZ_JJLH01000054.1 Protein Homology CDS 62274 63296 . + 0 ID=cds-WP_000487654.1;Parent=gene-AD39_RS03405;Dbxref=GenBank:WP_000487654.1;Name=WP_000487654.1;gbkey=CDS;gene=pldB;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026266.1;locus_tag=AD39_RS03405;product=lysophospholipase L2;protein_id=WP_000487654.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 63304 64104 . + . ID=gene-AD39_RS03400;Name=yigL;gbkey=Gene;gene=yigL;gene_biotype=protein_coding;locus_tag=AD39_RS03400;old_locus_tag=AD39_4403 NZ_JJLH01000054.1 Protein Homology CDS 63304 64104 . + 0 ID=cds-WP_000285352.1;Parent=gene-AD39_RS03400;Dbxref=GenBank:WP_000285352.1;Name=WP_000285352.1;gbkey=CDS;gene=yigL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312783.1;locus_tag=AD39_RS03400;product=sugar/pyridoxal phosphate phosphatase YigL;protein_id=WP_000285352.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 64180 65079 . + . ID=gene-AD39_RS03395;Name=bioP;gbkey=Gene;gene=bioP;gene_biotype=protein_coding;locus_tag=AD39_RS03395;old_locus_tag=AD39_4404 NZ_JJLH01000054.1 Protein Homology CDS 64180 65079 . + 0 ID=cds-WP_001399536.1;Parent=gene-AD39_RS03395;Dbxref=GenBank:WP_001399536.1;Name=WP_001399536.1;gbkey=CDS;gene=bioP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312784.1;locus_tag=AD39_RS03395;product=biotin transporter;protein_id=WP_001399536.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 64967 65920 . - . ID=gene-AD39_RS0125555;Name=metR;gbkey=Gene;gene=metR;gene_biotype=protein_coding;locus_tag=AD39_RS0125555 NZ_JJLH01000054.1 Protein Homology CDS 64967 65920 . - 0 ID=cds-WP_000573621.1;Parent=gene-AD39_RS0125555;Dbxref=GenBank:WP_000573621.1;Name=WP_000573621.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=metR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312785.1;locus_tag=AD39_RS0125555;product=HTH-type transcriptional regulator MetR;protein_id=WP_000573621.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 66038 68299 . + . ID=gene-AD39_RS03390;Name=metE;gbkey=Gene;gene=metE;gene_biotype=protein_coding;locus_tag=AD39_RS03390;old_locus_tag=AD39_4406 NZ_JJLH01000054.1 Protein Homology CDS 66038 68299 . + 0 ID=cds-WP_000153973.1;Parent=gene-AD39_RS03390;Dbxref=GenBank:WP_000153973.1;Name=WP_000153973.1;Ontology_term=GO:0008652,GO:0009086,GO:0003871,GO:0008270;gbkey=CDS;gene=metE;go_function=5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity|0003871||IEA,zinc ion binding|0008270||IEA;go_process=amino acid biosynthetic process|0008652||IEA,methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709635.1;locus_tag=AD39_RS03390;product=5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase;protein_id=WP_000153973.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 68338 69153 . - . ID=gene-AD39_RS03385;Name=ysgA;gbkey=Gene;gene=ysgA;gene_biotype=protein_coding;locus_tag=AD39_RS03385;old_locus_tag=AD39_4407 NZ_JJLH01000054.1 Protein Homology CDS 68338 69153 . - 0 ID=cds-WP_001307486.1;Parent=gene-AD39_RS03385;Dbxref=GenBank:WP_001307486.1;Name=WP_001307486.1;Ontology_term=GO:0016787,GO:0005829;gbkey=CDS;gene=ysgA;go_component=cytosol|0005829||IEA;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026268.1;locus_tag=AD39_RS03385;product=dienelactone hydrolase family protein;protein_id=WP_001307486.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 69415 70176 . + . ID=gene-AD39_RS03380;Name=udp;gbkey=Gene;gene=udp;gene_biotype=protein_coding;locus_tag=AD39_RS03380;old_locus_tag=AD39_4408 NZ_JJLH01000054.1 Protein Homology CDS 69415 70176 . + 0 ID=cds-WP_000045180.1;Parent=gene-AD39_RS03380;Dbxref=GenBank:WP_000045180.1;Name=WP_000045180.1;Ontology_term=GO:0009116,GO:0016763;gbkey=CDS;gene=udp;go_function=pentosyltransferase activity|0016763||IEA;go_process=nucleoside metabolic process|0009116||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312788.1;locus_tag=AD39_RS03380;product=uridine phosphorylase;protein_id=WP_000045180.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 70316 71743 . + . ID=gene-AD39_RS03375;Name=rmuC;gbkey=Gene;gene=rmuC;gene_biotype=protein_coding;locus_tag=AD39_RS03375;old_locus_tag=AD39_4409 NZ_JJLH01000054.1 Protein Homology CDS 70316 71743 . + 0 ID=cds-WP_000347714.1;Parent=gene-AD39_RS03375;Dbxref=GenBank:WP_000347714.1;Name=WP_000347714.1;gbkey=CDS;gene=rmuC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312789.1;locus_tag=AD39_RS03375;product=DNA recombination protein RmuC;protein_id=WP_000347714.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 71838 72593 . + . ID=gene-AD39_RS03370;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=AD39_RS03370;old_locus_tag=AD39_4410 NZ_JJLH01000054.1 Protein Homology CDS 71838 72593 . + 0 ID=cds-WP_000227958.1;Parent=gene-AD39_RS03370;Dbxref=GenBank:WP_000227958.1;Name=WP_000227958.1;Ontology_term=GO:0008168;gbkey=CDS;gene=ubiE;go_function=methyltransferase activity|0008168||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312790.1;locus_tag=AD39_RS03370;product=bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1%2C4-benzoquinol methylase UbiE;protein_id=WP_000227958.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 72607 73212 . + . ID=gene-AD39_RS03365;Name=ubiJ;gbkey=Gene;gene=ubiJ;gene_biotype=protein_coding;locus_tag=AD39_RS03365;old_locus_tag=AD39_4411 NZ_JJLH01000054.1 Protein Homology CDS 72607 73212 . + 0 ID=cds-WP_001295259.1;Parent=gene-AD39_RS03365;Dbxref=GenBank:WP_001295259.1;Name=WP_001295259.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiJ;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418278.1;locus_tag=AD39_RS03365;product=ubiquinone biosynthesis protein UbiJ;protein_id=WP_001295259.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 73209 74849 . + . ID=gene-AD39_RS03360;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;locus_tag=AD39_RS03360;old_locus_tag=AD39_4412 NZ_JJLH01000054.1 Protein Homology CDS 73209 74849 . + 0 ID=cds-WP_001456773.1;Parent=gene-AD39_RS03360;Dbxref=GenBank:WP_001456773.1;Name=WP_001456773.1;Ontology_term=GO:0006744;gbkey=CDS;gene=ubiB;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312792.1;locus_tag=AD39_RS03360;product=ubiquinone biosynthesis regulatory protein kinase UbiB;protein_id=WP_001456773.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 74928 75197 . + . ID=gene-AD39_RS03355;Name=tatA;gbkey=Gene;gene=tatA;gene_biotype=protein_coding;locus_tag=AD39_RS03355;old_locus_tag=AD39_4413 NZ_JJLH01000054.1 Protein Homology CDS 74928 75197 . + 0 ID=cds-WP_001295260.1;Parent=gene-AD39_RS03355;Dbxref=GenBank:WP_001295260.1;Name=WP_001295260.1;gbkey=CDS;gene=tatA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312793.1;locus_tag=AD39_RS03355;product=Sec-independent protein translocase subunit TatA;protein_id=WP_001295260.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 75201 75716 . + . ID=gene-AD39_RS03350;Name=tatB;gbkey=Gene;gene=tatB;gene_biotype=protein_coding;locus_tag=AD39_RS03350;old_locus_tag=AD39_4414 NZ_JJLH01000054.1 Protein Homology CDS 75201 75716 . + 0 ID=cds-WP_000459594.1;Parent=gene-AD39_RS03350;Dbxref=GenBank:WP_000459594.1;Name=WP_000459594.1;Ontology_term=GO:0015628,GO:0008320,GO:0016020;gbkey=CDS;gene=tatB;go_component=membrane|0016020||IEA;go_function=protein transmembrane transporter activity|0008320||IEA;go_process=protein secretion by the type II secretion system|0015628||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312794.1;locus_tag=AD39_RS03350;product=Sec-independent protein translocase protein TatB;protein_id=WP_000459594.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 75719 76495 . + . ID=gene-AD39_RS03345;Name=tatC;gbkey=Gene;gene=tatC;gene_biotype=protein_coding;locus_tag=AD39_RS03345;old_locus_tag=AD39_4415 NZ_JJLH01000054.1 Protein Homology CDS 75719 76495 . + 0 ID=cds-WP_000109943.1;Parent=gene-AD39_RS03345;Dbxref=GenBank:WP_000109943.1;Name=WP_000109943.1;gbkey=CDS;gene=tatC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312795.1;locus_tag=AD39_RS03345;product=Sec-independent protein translocase subunit TatC;protein_id=WP_000109943.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 76537 77319 . + . ID=gene-AD39_RS03340;Name=tatD;gbkey=Gene;gene=tatD;gene_biotype=protein_coding;locus_tag=AD39_RS03340;old_locus_tag=AD39_4416 NZ_JJLH01000054.1 Protein Homology CDS 76537 77319 . + 0 ID=cds-WP_001299486.1;Parent=gene-AD39_RS03340;Dbxref=GenBank:WP_001299486.1;Name=WP_001299486.1;Ontology_term=GO:0008408;gbkey=CDS;gene=tatD;go_function=3'-5' exonuclease activity|0008408||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709645.2;locus_tag=AD39_RS03340;product=3'-5' ssDNA/RNA exonuclease TatD;protein_id=WP_001299486.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 77316 77804 . - . ID=gene-AD39_RS03335;Name=rfaH;gbkey=Gene;gene=rfaH;gene_biotype=protein_coding;locus_tag=AD39_RS03335;old_locus_tag=AD39_4417 NZ_JJLH01000054.1 Protein Homology CDS 77316 77804 . - 0 ID=cds-WP_001192396.1;Parent=gene-AD39_RS03335;Dbxref=GenBank:WP_001192396.1;Name=WP_001192396.1;Ontology_term=GO:0006355;gbkey=CDS;gene=rfaH;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312797.1;locus_tag=AD39_RS03335;product=transcription/translation regulatory transformer protein RfaH;protein_id=WP_001192396.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 77971 79464 . + . ID=gene-AD39_RS03330;Name=ubiD;gbkey=Gene;gene=ubiD;gene_biotype=protein_coding;locus_tag=AD39_RS03330;old_locus_tag=AD39_4418 NZ_JJLH01000054.1 Protein Homology CDS 77971 79464 . + 0 ID=cds-WP_000339804.1;Parent=gene-AD39_RS03330;Dbxref=GenBank:WP_000339804.1;Name=WP_000339804.1;Ontology_term=GO:0016831;gbkey=CDS;gene=ubiD;go_function=carboxy-lyase activity|0016831||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418285.1;locus_tag=AD39_RS03330;product=4-hydroxy-3-polyprenylbenzoate decarboxylase;protein_id=WP_000339804.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 79510 80211 . + . ID=gene-AD39_RS03325;Name=fre;gbkey=Gene;gene=fre;gene_biotype=protein_coding;locus_tag=AD39_RS03325;old_locus_tag=AD39_4419 NZ_JJLH01000054.1 Protein Homology CDS 79510 80211 . + 0 ID=cds-WP_032266554.1;Parent=gene-AD39_RS03325;Dbxref=GenBank:WP_032266554.1;Name=WP_032266554.1;Ontology_term=GO:0016491;gbkey=CDS;gene=fre;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312799.1;locus_tag=AD39_RS03325;product=NAD(P)H-flavin reductase;protein_id=WP_032266554.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 80403 81566 . - . ID=gene-AD39_RS03320;Name=fadA;gbkey=Gene;gene=fadA;gene_biotype=protein_coding;locus_tag=AD39_RS03320;old_locus_tag=AD39_4420 NZ_JJLH01000054.1 Protein Homology CDS 80403 81566 . - 0 ID=cds-WP_032286134.1;Parent=gene-AD39_RS03320;Dbxref=GenBank:WP_032286134.1;Name=WP_032286134.1;Ontology_term=GO:0006631,GO:0016042,GO:0003988,GO:0005737;gbkey=CDS;gene=fadA;go_component=cytoplasm|0005737||IEA;go_function=acetyl-CoA C-acyltransferase activity|0003988||IEA;go_process=fatty acid metabolic process|0006631||IEA,lipid catabolic process|0016042||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709649.1;locus_tag=AD39_RS03320;product=acetyl-CoA C-acyltransferase FadA;protein_id=WP_032286134.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 81576 83765 . - . ID=gene-AD39_RS03315;Name=fadB;gbkey=Gene;gene=fadB;gene_biotype=protein_coding;locus_tag=AD39_RS03315;old_locus_tag=AD39_4421 NZ_JJLH01000054.1 Protein Homology CDS 81576 83765 . - 0 ID=cds-WP_000965893.1;Parent=gene-AD39_RS03315;Dbxref=GenBank:WP_000965893.1;Name=WP_000965893.1;Ontology_term=GO:0009062,GO:0003857,GO:0004165,GO:0004300,GO:0008692,GO:0036125;gbkey=CDS;gene=fadB;go_component=fatty acid beta-oxidation multienzyme complex|0036125||IEA;go_function=3-hydroxyacyl-CoA dehydrogenase activity|0003857||IEA,delta(3)-delta(2)-enoyl-CoA isomerase activity|0004165||IEA,enoyl-CoA hydratase activity|0004300||IEA,3-hydroxybutyryl-CoA epimerase activity|0008692||IEA;go_process=fatty acid catabolic process|0009062||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418288.1;locus_tag=AD39_RS03315;product=fatty acid oxidation complex subunit alpha FadB;protein_id=WP_000965893.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 83955 85286 . + . ID=gene-AD39_RS03310;Name=pepQ;gbkey=Gene;gene=pepQ;gene_biotype=protein_coding;locus_tag=AD39_RS03310;old_locus_tag=AD39_4422 NZ_JJLH01000054.1 Protein Homology CDS 83955 85286 . + 0 ID=cds-WP_000444574.1;Parent=gene-AD39_RS03310;Dbxref=GenBank:WP_000444574.1;Name=WP_000444574.1;gbkey=CDS;gene=pepQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418289.1;locus_tag=AD39_RS03310;product=Xaa-Pro dipeptidase;protein_id=WP_000444574.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 85286 85900 . + . ID=gene-AD39_RS03305;Name=yigZ;gbkey=Gene;gene=yigZ;gene_biotype=protein_coding;locus_tag=AD39_RS03305;old_locus_tag=AD39_4423 NZ_JJLH01000054.1 Protein Homology CDS 85286 85900 . + 0 ID=cds-WP_001296979.1;Parent=gene-AD39_RS03305;Dbxref=GenBank:WP_001296979.1;Name=WP_001296979.1;gbkey=CDS;gene=yigZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709652.2;locus_tag=AD39_RS03305;product=IMPACT family protein;protein_id=WP_001296979.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 85939 87390 . + . ID=gene-AD39_RS03300;Name=trkH;gbkey=Gene;gene=trkH;gene_biotype=protein_coding;locus_tag=AD39_RS03300;old_locus_tag=AD39_4424 NZ_JJLH01000054.1 Protein Homology CDS 85939 87390 . + 0 ID=cds-WP_001395101.1;Parent=gene-AD39_RS03300;Dbxref=GenBank:WP_001395101.1;Name=WP_001395101.1;gbkey=CDS;gene=trkH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004146450.1;locus_tag=AD39_RS03300;product=Trk system potassium transporter TrkH;protein_id=WP_001395101.1;transl_table=11 NZ_JJLH01000054.1 RefSeq gene 87402 87947 . + . ID=gene-AD39_RS03295;Name=hemG;gbkey=Gene;gene=hemG;gene_biotype=protein_coding;locus_tag=AD39_RS03295;old_locus_tag=AD39_4426 NZ_JJLH01000054.1 Protein Homology CDS 87402 87947 . + 0 ID=cds-WP_000853969.1;Parent=gene-AD39_RS03295;Dbxref=GenBank:WP_000853969.1;Name=WP_000853969.1;gbkey=CDS;gene=hemG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312805.1;locus_tag=AD39_RS03295;product=menaquinone-dependent protoporphyrinogen IX dehydrogenase;protein_id=WP_000853969.1;transl_table=11 ##sequence-region NZ_JJLH01000055.1 1 417 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000055.1 RefSeq region 1 417 . + . ID=NZ_JJLH01000055.1:1..417;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000055.1 RefSeq gene 305 417 . + . ID=gene-AD39_RS0125560;Name=AD39_RS0125560;end_range=417,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0125560;partial=true NZ_JJLH01000055.1 cmsearch rRNA 305 417 . + . ID=rna-AD39_RS0125560;Parent=gene-AD39_RS0125560;Dbxref=RFAM:RF00177;end_range=417,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125560;partial=true;product=16S ribosomal RNA NZ_JJLH01000055.1 cmsearch exon 305 417 . + . ID=exon-AD39_RS0125560-1;Parent=rna-AD39_RS0125560;Dbxref=RFAM:RF00177;end_range=417,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125560;partial=true;product=16S ribosomal RNA ##sequence-region NZ_JJLH01000056.1 1 1179 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000056.1 RefSeq region 1 1179 . + . ID=NZ_JJLH01000056.1:1..1179;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000056.1 RefSeq gene 1 916 . + . ID=gene-AD39_RS0125565;Name=AD39_RS0125565;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0125565;partial=true;start_range=.,1 NZ_JJLH01000056.1 cmsearch rRNA 1 916 . + . ID=rna-AD39_RS0125565;Parent=gene-AD39_RS0125565;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125565;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_JJLH01000056.1 cmsearch exon 1 916 . + . ID=exon-AD39_RS0125565-1;Parent=rna-AD39_RS0125565;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125565;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_JJLH01000056.1 RefSeq gene 1088 1163 . + . ID=gene-AD39_RS03290;Name=AD39_RS03290;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS03290;old_locus_tag=AD39_4429 NZ_JJLH01000056.1 tRNAscan-SE tRNA 1088 1163 . + . ID=rna-AD39_RS03290;Parent=gene-AD39_RS03290;anticodon=(pos:1122..1124);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03290;product=tRNA-Glu NZ_JJLH01000056.1 tRNAscan-SE exon 1088 1163 . + . ID=exon-AD39_RS03290-1;Parent=rna-AD39_RS03290;anticodon=(pos:1122..1124);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03290;product=tRNA-Glu ##sequence-region NZ_JJLH01000057.1 1 1613 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000057.1 RefSeq region 1 1613 . + . ID=NZ_JJLH01000057.1:1..1613;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000057.1 RefSeq gene 1 1151 . + . ID=gene-AD39_RS0125570;Name=AD39_RS0125570;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0125570;partial=true;start_range=.,1 NZ_JJLH01000057.1 cmsearch rRNA 1 1151 . + . ID=rna-AD39_RS0125570;Parent=gene-AD39_RS0125570;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125570;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_JJLH01000057.1 cmsearch exon 1 1151 . + . ID=exon-AD39_RS0125570-1;Parent=rna-AD39_RS0125570;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125570;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_JJLH01000057.1 RefSeq gene 1246 1361 . + . ID=gene-AD39_RS03285;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=AD39_RS03285;old_locus_tag=AD39_4430 NZ_JJLH01000057.1 cmsearch rRNA 1246 1361 . + . ID=rna-AD39_RS03285;Parent=gene-AD39_RS03285;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS03285;product=5S ribosomal RNA NZ_JJLH01000057.1 cmsearch exon 1246 1361 . + . ID=exon-AD39_RS03285-1;Parent=rna-AD39_RS03285;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS03285;product=5S ribosomal RNA NZ_JJLH01000057.1 RefSeq gene 1376 1451 . + . ID=gene-AD39_RS03280;Name=AD39_RS03280;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS03280;old_locus_tag=AD39_4431 NZ_JJLH01000057.1 tRNAscan-SE tRNA 1376 1451 . + . ID=rna-AD39_RS03280;Parent=gene-AD39_RS03280;anticodon=(pos:1409..1411);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03280;product=tRNA-Thr NZ_JJLH01000057.1 tRNAscan-SE exon 1376 1451 . + . ID=exon-AD39_RS03280-1;Parent=rna-AD39_RS03280;anticodon=(pos:1409..1411);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS03280;product=tRNA-Thr NZ_JJLH01000057.1 RefSeq gene 1491 1606 . + . ID=gene-AD39_RS03275;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=AD39_RS03275;old_locus_tag=AD39_4432 NZ_JJLH01000057.1 cmsearch rRNA 1491 1606 . + . ID=rna-AD39_RS03275;Parent=gene-AD39_RS03275;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS03275;product=5S ribosomal RNA NZ_JJLH01000057.1 cmsearch exon 1491 1606 . + . ID=exon-AD39_RS03275-1;Parent=rna-AD39_RS03275;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS03275;product=5S ribosomal RNA ##sequence-region NZ_JJLH01000058.1 1 129346 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000058.1 RefSeq region 1 129346 . + . ID=NZ_JJLH01000058.1:1..129346;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000058.1 RefSeq gene 1 1151 . + . ID=gene-AD39_RS0125575;Name=AD39_RS0125575;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0125575;partial=true;start_range=.,1 NZ_JJLH01000058.1 cmsearch rRNA 1 1151 . + . ID=rna-AD39_RS0125575;Parent=gene-AD39_RS0125575;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125575;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_JJLH01000058.1 cmsearch exon 1 1151 . + . ID=exon-AD39_RS0125575-1;Parent=rna-AD39_RS0125575;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125575;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_JJLH01000058.1 RefSeq gene 1246 1361 . + . ID=gene-AD39_RS03270;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=AD39_RS03270;old_locus_tag=AD39_4433 NZ_JJLH01000058.1 cmsearch rRNA 1246 1361 . + . ID=rna-AD39_RS03270;Parent=gene-AD39_RS03270;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS03270;product=5S ribosomal RNA NZ_JJLH01000058.1 cmsearch exon 1246 1361 . + . ID=exon-AD39_RS03270-1;Parent=rna-AD39_RS03270;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS03270;product=5S ribosomal RNA NZ_JJLH01000058.1 RefSeq gene 1466 1993 . - . ID=gene-AD39_RS03265;Name=mobB;gbkey=Gene;gene=mobB;gene_biotype=protein_coding;locus_tag=AD39_RS03265;old_locus_tag=AD39_4434 NZ_JJLH01000058.1 Protein Homology CDS 1466 1993 . - 0 ID=cds-WP_000907641.1;Parent=gene-AD39_RS03265;Dbxref=GenBank:WP_000907641.1;Name=WP_000907641.1;Ontology_term=GO:0006777,GO:0005525;gbkey=CDS;gene=mobB;go_function=GTP binding|0005525||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418293.2;locus_tag=AD39_RS03265;product=molybdopterin-guanine dinucleotide biosynthesis protein MobB;protein_id=WP_000907641.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 1975 2559 . - . ID=gene-AD39_RS03260;Name=mobA;gbkey=Gene;gene=mobA;gene_biotype=protein_coding;locus_tag=AD39_RS03260;old_locus_tag=AD39_4435 NZ_JJLH01000058.1 Protein Homology CDS 1975 2559 . - 0 ID=cds-WP_001052174.1;Parent=gene-AD39_RS03260;Dbxref=GenBank:WP_001052174.1;Name=WP_001052174.1;Ontology_term=GO:0006777,GO:0003824;gbkey=CDS;gene=mobA;go_function=catalytic activity|0003824||IEA;go_process=Mo-molybdopterin cofactor biosynthetic process|0006777||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418294.1;locus_tag=AD39_RS03260;product=molybdenum cofactor guanylyltransferase MobA;protein_id=WP_001052174.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 2629 2898 . + . ID=gene-AD39_RS03255;Name=yihD;gbkey=Gene;gene=yihD;gene_biotype=protein_coding;locus_tag=AD39_RS03255;old_locus_tag=AD39_4436 NZ_JJLH01000058.1 Protein Homology CDS 2629 2898 . + 0 ID=cds-WP_001295263.1;Parent=gene-AD39_RS03255;Dbxref=GenBank:WP_001295263.1;Name=WP_001295263.1;gbkey=CDS;gene=yihD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966571.1;locus_tag=AD39_RS03255;product=YihD family protein;protein_id=WP_001295263.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 2975 3961 . + . ID=gene-AD39_RS03250;Name=srkA;gbkey=Gene;gene=srkA;gene_biotype=protein_coding;locus_tag=AD39_RS03250;old_locus_tag=AD39_4437 NZ_JJLH01000058.1 Protein Homology CDS 2975 3961 . + 0 ID=cds-WP_001065520.1;Parent=gene-AD39_RS03250;Dbxref=GenBank:WP_001065520.1;Name=WP_001065520.1;gbkey=CDS;gene=srkA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312809.1;locus_tag=AD39_RS03250;product=stress response kinase SrkA;protein_id=WP_001065520.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 3978 4604 . + . ID=gene-AD39_RS03245;Name=dsbA;gbkey=Gene;gene=dsbA;gene_biotype=protein_coding;locus_tag=AD39_RS03245;old_locus_tag=AD39_4438 NZ_JJLH01000058.1 Protein Homology CDS 3978 4604 . + 0 ID=cds-WP_000725337.1;Parent=gene-AD39_RS03245;Dbxref=GenBank:WP_000725337.1;Name=WP_000725337.1;Ontology_term=GO:0016491;gbkey=CDS;gene=dsbA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312810.1;locus_tag=AD39_RS03245;product=thiol:disulfide interchange protein DsbA;protein_id=WP_000725337.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 4759 6189 . + . ID=gene-AD39_RS03240;Name=yihF;gbkey=Gene;gene=yihF;gene_biotype=protein_coding;locus_tag=AD39_RS03240;old_locus_tag=AD39_4440 NZ_JJLH01000058.1 Protein Homology CDS 4759 6189 . + 0 ID=cds-WP_000581436.1;Parent=gene-AD39_RS03240;Dbxref=GenBank:WP_000581436.1;Name=WP_000581436.1;gbkey=CDS;gene=yihF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418298.4;locus_tag=AD39_RS03240;product=YdgA family protein;protein_id=WP_000581436.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 6230 7162 . - . ID=gene-AD39_RS03235;Name=yihG;gbkey=Gene;gene=yihG;gene_biotype=protein_coding;locus_tag=AD39_RS03235;old_locus_tag=AD39_4441 NZ_JJLH01000058.1 Protein Homology CDS 6230 7162 . - 0 ID=cds-WP_001303740.1;Parent=gene-AD39_RS03235;Dbxref=GenBank:WP_001303740.1;Name=WP_001303740.1;Ontology_term=GO:0016746;gbkey=CDS;gene=yihG;go_function=acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312812.1;locus_tag=AD39_RS03235;product=acyltransferase;protein_id=WP_001303740.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 7526 10312 . + . ID=gene-AD39_RS03230;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;locus_tag=AD39_RS03230;old_locus_tag=AD39_4443 NZ_JJLH01000058.1 Protein Homology CDS 7526 10312 . + 0 ID=cds-WP_000250055.1;Parent=gene-AD39_RS03230;Dbxref=GenBank:WP_000250055.1;Name=WP_000250055.1;Ontology_term=GO:0006261,GO:0003676,GO:0003677,GO:0003887,GO:0008408;gbkey=CDS;gene=polA;go_function=nucleic acid binding|0003676||IEA,DNA binding|0003677||IEA,DNA-directed DNA polymerase activity|0003887||IEA,3'-5' exonuclease activity|0008408||IEA;go_process=DNA-templated DNA replication|0006261||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418300.1;locus_tag=AD39_RS03230;product=DNA polymerase I;protein_id=WP_000250055.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 10694 11326 . - . ID=gene-AD39_RS03225;Name=yihA;gbkey=Gene;gene=yihA;gene_biotype=protein_coding;locus_tag=AD39_RS03225;old_locus_tag=AD39_4445 NZ_JJLH01000058.1 Protein Homology CDS 10694 11326 . - 0 ID=cds-WP_000183349.1;Parent=gene-AD39_RS03225;Dbxref=GenBank:WP_000183349.1;Name=WP_000183349.1;Ontology_term=GO:0042254,GO:0003924,GO:0005525,GO:0043022,GO:0005737;gbkey=CDS;gene=yihA;go_component=cytoplasm|0005737||IEA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA,ribosome binding|0043022||IEA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418301.3;locus_tag=AD39_RS03225;product=ribosome biogenesis GTP-binding protein YihA/YsxC;protein_id=WP_000183349.1;transl_table=11 NZ_JJLH01000058.1 RefSeq pseudogene 11623 11789 . + . ID=gene-AD39_RS29865;Name=AD39_RS29865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29865;pseudo=true NZ_JJLH01000058.1 Protein Homology CDS 11623 11789 . + 0 ID=cds-AD39_RS29865;Parent=gene-AD39_RS29865;Note=frameshifted%3B internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000546704.1;locus_tag=AD39_RS29865;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 11908 12417 . + . ID=gene-AD39_RS03220;Name=yihI;gbkey=Gene;gene=yihI;gene_biotype=protein_coding;locus_tag=AD39_RS03220;old_locus_tag=AD39_4446 NZ_JJLH01000058.1 Protein Homology CDS 11908 12417 . + 0 ID=cds-WP_001295266.1;Parent=gene-AD39_RS03220;Dbxref=GenBank:WP_001295266.1;Name=WP_001295266.1;gbkey=CDS;gene=yihI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418302.1;locus_tag=AD39_RS03220;product=Der GTPase-activating protein YihI;protein_id=WP_001295266.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 12606 13979 . + . ID=gene-AD39_RS03215;Name=hemN;gbkey=Gene;gene=hemN;gene_biotype=protein_coding;locus_tag=AD39_RS03215;old_locus_tag=AD39_4448 NZ_JJLH01000058.1 Protein Homology CDS 12606 13979 . + 0 ID=cds-WP_000116090.1;Parent=gene-AD39_RS03215;Dbxref=GenBank:WP_000116090.1;Name=WP_000116090.1;Ontology_term=GO:0006779,GO:0004109,GO:0005737;gbkey=CDS;gene=hemN;go_component=cytoplasm|0005737||IEA;go_function=coproporphyrinogen oxidase activity|0004109||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312816.2;locus_tag=AD39_RS03215;product=oxygen-independent coproporphyrinogen III oxidase;protein_id=WP_000116090.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 14189 14299 . - . ID=gene-AD39_RS0125585;Name=yshB;gbkey=Gene;gene=yshB;gene_biotype=protein_coding;locus_tag=AD39_RS0125585 NZ_JJLH01000058.1 Protein Homology CDS 14189 14299 . - 0 ID=cds-WP_000893994.1;Parent=gene-AD39_RS0125585;Dbxref=GenBank:WP_000893994.1;Name=WP_000893994.1;gbkey=CDS;gene=yshB;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791260.1;locus_tag=AD39_RS0125585;product=YshB family small membrane protein;protein_id=WP_000893994.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 14411 15820 . - . ID=gene-AD39_RS03210;Name=glnG;gbkey=Gene;gene=glnG;gene_biotype=protein_coding;locus_tag=AD39_RS03210;old_locus_tag=AD39_4449 NZ_JJLH01000058.1 Protein Homology CDS 14411 15820 . - 0 ID=cds-WP_032287656.1;Parent=gene-AD39_RS03210;Dbxref=GenBank:WP_032287656.1;Name=WP_032287656.1;Ontology_term=GO:0006355,GO:0043565;gbkey=CDS;gene=glnG;go_function=sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012133942.1;locus_tag=AD39_RS03210;product=nitrogen regulation protein NR(I);protein_id=WP_032287656.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 15832 16881 . - . ID=gene-AD39_RS03205;Name=glnL;gbkey=Gene;gene=glnL;gene_biotype=protein_coding;locus_tag=AD39_RS03205;old_locus_tag=AD39_4450 NZ_JJLH01000058.1 Protein Homology CDS 15832 16881 . - 0 ID=cds-WP_000190577.1;Parent=gene-AD39_RS03205;Dbxref=GenBank:WP_000190577.1;Name=WP_000190577.1;Ontology_term=GO:0006355,GO:0007165,GO:0016310,GO:0000155;gbkey=CDS;gene=glnL;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312818.1;locus_tag=AD39_RS03205;product=nitrogen regulation protein NR(II);protein_id=WP_000190577.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 17055 18464 . - . ID=gene-AD39_RS03200;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=AD39_RS03200;old_locus_tag=AD39_4451 NZ_JJLH01000058.1 Protein Homology CDS 17055 18464 . - 0 ID=cds-WP_001271717.1;Parent=gene-AD39_RS03200;Dbxref=GenBank:WP_001271717.1;Name=WP_001271717.1;Ontology_term=GO:0006542,GO:0008152,GO:0004356;gbkey=CDS;gene=glnA;go_function=glutamine synthetase activity|0004356||IEA;go_process=glutamine biosynthetic process|0006542||IEA,metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020233234.1;locus_tag=AD39_RS03200;product=glutamate--ammonia ligase;protein_id=WP_001271717.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 18837 20660 . + . ID=gene-AD39_RS03195;Name=typA;gbkey=Gene;gene=typA;gene_biotype=protein_coding;locus_tag=AD39_RS03195;old_locus_tag=AD39_4452 NZ_JJLH01000058.1 Protein Homology CDS 18837 20660 . + 0 ID=cds-WP_000570668.1;Parent=gene-AD39_RS03195;Dbxref=GenBank:WP_000570668.1;Name=WP_000570668.1;gbkey=CDS;gene=typA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312820.1;locus_tag=AD39_RS03195;product=ribosome-dependent GTPase TypA;protein_id=WP_000570668.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 20877 21587 . + . ID=gene-AD39_RS03190;Name=yihL;gbkey=Gene;gene=yihL;gene_biotype=protein_coding;locus_tag=AD39_RS03190;old_locus_tag=AD39_4453 NZ_JJLH01000058.1 Protein Homology CDS 20877 21587 . + 0 ID=cds-WP_000829798.1;Parent=gene-AD39_RS03190;Dbxref=GenBank:WP_000829798.1;Name=WP_000829798.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;gene=yihL;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312821.1;locus_tag=AD39_RS03190;product=GntR family transcriptional regulator;protein_id=WP_000829798.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 21595 22575 . + . ID=gene-AD39_RS03185;Name=yihM;gbkey=Gene;gene=yihM;gene_biotype=protein_coding;locus_tag=AD39_RS03185;old_locus_tag=AD39_4454 NZ_JJLH01000058.1 Protein Homology CDS 21595 22575 . + 0 ID=cds-WP_000256396.1;Parent=gene-AD39_RS03185;Dbxref=GenBank:WP_000256396.1;Name=WP_000256396.1;Ontology_term=GO:0003824,GO:0016853;gbkey=CDS;gene=yihM;go_function=catalytic activity|0003824||IEA,isomerase activity|0016853||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418309.1;locus_tag=AD39_RS03185;product=sugar phosphate isomerase/epimerase family protein;protein_id=WP_000256396.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 22677 23942 . + . ID=gene-AD39_RS03180;Name=yihN;gbkey=Gene;gene=yihN;gene_biotype=protein_coding;locus_tag=AD39_RS03180;old_locus_tag=AD39_4455 NZ_JJLH01000058.1 Protein Homology CDS 22677 23942 . + 0 ID=cds-WP_000956320.1;Parent=gene-AD39_RS03180;Dbxref=GenBank:WP_000956320.1;Name=WP_000956320.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yihN;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312823.1;locus_tag=AD39_RS03180;product=MFS transporter;protein_id=WP_000956320.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 24053 24841 . - . ID=gene-AD39_RS03175;Name=AD39_RS03175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS03175;old_locus_tag=AD39_4456 NZ_JJLH01000058.1 Protein Homology CDS 24053 24841 . - 0 ID=cds-WP_032287651.1;Parent=gene-AD39_RS03175;Dbxref=GenBank:WP_032287651.1;Name=WP_032287651.1;Ontology_term=GO:0003677,GO:0003700;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000022208.1;locus_tag=AD39_RS03175;product=DeoR/GlpR family DNA-binding transcription regulator;protein_id=WP_032287651.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 24881 25777 . - . ID=gene-AD39_RS03170;Name=AD39_RS03170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS03170;old_locus_tag=AD39_4457 NZ_JJLH01000058.1 Protein Homology CDS 24881 25777 . - 0 ID=cds-WP_000160872.1;Parent=gene-AD39_RS03170;Dbxref=GenBank:WP_000160872.1;Name=WP_000160872.1;Ontology_term=GO:0005975,GO:0005524,GO:0016301;gbkey=CDS;go_function=ATP binding|0005524||IEA,kinase activity|0016301||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000196715.1;locus_tag=AD39_RS03170;product=sugar kinase;protein_id=WP_000160872.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 25950 26828 . + . ID=gene-AD39_RS03165;Name=yihU;gbkey=Gene;gene=yihU;gene_biotype=protein_coding;locus_tag=AD39_RS03165;old_locus_tag=AD39_4458 NZ_JJLH01000058.1 Protein Homology CDS 25950 26828 . + 0 ID=cds-WP_001299483.1;Parent=gene-AD39_RS03165;Dbxref=GenBank:WP_001299483.1;Name=WP_001299483.1;Ontology_term=GO:0016491;gbkey=CDS;gene=yihU;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001318159.1;locus_tag=AD39_RS03165;product=sulfolactaldehyde 3-reductase;protein_id=WP_001299483.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 26853 27740 . + . ID=gene-AD39_RS03160;Name=AD39_RS03160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS03160;old_locus_tag=AD39_4459 NZ_JJLH01000058.1 Protein Homology CDS 26853 27740 . + 0 ID=cds-WP_000094544.1;Parent=gene-AD39_RS03160;Dbxref=GenBank:WP_000094544.1;Name=WP_000094544.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000094541.1;locus_tag=AD39_RS03160;product=aldolase;protein_id=WP_000094544.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 27773 28783 . + . ID=gene-AD39_RS03155;Name=AD39_RS03155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS03155;old_locus_tag=AD39_4460 NZ_JJLH01000058.1 Protein Homology CDS 27773 28783 . + 0 ID=cds-WP_000357967.1;Parent=gene-AD39_RS03155;Dbxref=GenBank:WP_000357967.1;Name=WP_000357967.1;Ontology_term=GO:0008270,GO:0016616,GO:0030554;gbkey=CDS;go_function=zinc ion binding|0008270||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA,adenyl nucleotide binding|0030554||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001494590.1;locus_tag=AD39_RS03155;product=zinc-dependent alcohol dehydrogenase;protein_id=WP_000357967.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 28853 30286 . + . ID=gene-AD39_RS03150;Name=AD39_RS03150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS03150;old_locus_tag=AD39_4461 NZ_JJLH01000058.1 Protein Homology CDS 28853 30286 . + 0 ID=cds-WP_032251335.1;Parent=gene-AD39_RS03150;Dbxref=GenBank:WP_032251335.1;Name=WP_032251335.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016246439.1;locus_tag=AD39_RS03150;product=MFS transporter;protein_id=WP_032251335.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 30385 31734 . + . ID=gene-AD39_RS03145;Name=AD39_RS03145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS03145;old_locus_tag=AD39_4462 NZ_JJLH01000058.1 Protein Homology CDS 30385 31734 . + 0 ID=cds-WP_001291190.1;Parent=gene-AD39_RS03145;Dbxref=GenBank:WP_001291190.1;Name=WP_001291190.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001291189.1;locus_tag=AD39_RS03145;product=MFS transporter;protein_id=WP_001291190.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 31724 32611 . + . ID=gene-AD39_RS03140;Name=AD39_RS03140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS03140;old_locus_tag=AD39_4463 NZ_JJLH01000058.1 Protein Homology CDS 31724 32611 . + 0 ID=cds-WP_032197468.1;Parent=gene-AD39_RS03140;Dbxref=GenBank:WP_032197468.1;Name=WP_032197468.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001309103.1;locus_tag=AD39_RS03140;product=aldose 1-epimerase;protein_id=WP_032197468.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 32752 33351 . + . ID=gene-AD39_RS03135;Name=yihX;gbkey=Gene;gene=yihX;gene_biotype=protein_coding;locus_tag=AD39_RS03135;old_locus_tag=AD39_4464 NZ_JJLH01000058.1 Protein Homology CDS 32752 33351 . + 0 ID=cds-WP_001464827.1;Parent=gene-AD39_RS03135;Dbxref=GenBank:WP_001464827.1;Name=WP_001464827.1;gbkey=CDS;gene=yihX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709685.2;locus_tag=AD39_RS03135;product=glucose-1-phosphatase;protein_id=WP_001464827.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 33345 34217 . + . ID=gene-AD39_RS03130;Name=yihY;gbkey=Gene;gene=yihY;gene_biotype=protein_coding;locus_tag=AD39_RS03130;old_locus_tag=AD39_4465 NZ_JJLH01000058.1 Protein Homology CDS 33345 34217 . + 0 ID=cds-WP_000920762.1;Parent=gene-AD39_RS03130;Dbxref=GenBank:WP_000920762.1;Name=WP_000920762.1;gbkey=CDS;gene=yihY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312836.1;locus_tag=AD39_RS03130;product=virulence factor BrkB family protein;protein_id=WP_000920762.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 34214 34651 . + . ID=gene-AD39_RS03125;Name=dtd;gbkey=Gene;gene=dtd;gene_biotype=protein_coding;locus_tag=AD39_RS03125;old_locus_tag=AD39_4466 NZ_JJLH01000058.1 Protein Homology CDS 34214 34651 . + 0 ID=cds-WP_000560983.1;Parent=gene-AD39_RS03125;Dbxref=GenBank:WP_000560983.1;Name=WP_000560983.1;Ontology_term=GO:0008152,GO:0004045;gbkey=CDS;gene=dtd;go_function=peptidyl-tRNA hydrolase activity|0004045||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000560980.1;locus_tag=AD39_RS03125;product=D-aminoacyl-tRNA deacylase;protein_id=WP_000560983.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 34696 35637 . + . ID=gene-AD39_RS03120;Name=fabY;gbkey=Gene;gene=fabY;gene_biotype=protein_coding;gene_synonym=yiiD;locus_tag=AD39_RS03120;old_locus_tag=AD39_4467 NZ_JJLH01000058.1 Protein Homology CDS 34696 35637 . + 0 ID=cds-WP_001297068.1;Parent=gene-AD39_RS03120;Dbxref=GenBank:WP_001297068.1;Name=WP_001297068.1;gbkey=CDS;gene=fabY;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001666856.1;locus_tag=AD39_RS03120;product=fatty acid biosynthesis protein FabY;protein_id=WP_001297068.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 35701 36609 . - . ID=gene-AD39_RS03115;Name=AD39_RS03115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS03115;old_locus_tag=AD39_4468 NZ_JJLH01000058.1 Protein Homology CDS 35701 36609 . - 0 ID=cds-WP_001497945.1;Parent=gene-AD39_RS03115;Dbxref=GenBank:WP_001497945.1;Name=WP_001497945.1;Ontology_term=GO:0016787;gbkey=CDS;go_function=hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001296611.1;locus_tag=AD39_RS03115;product=alpha/beta hydrolase;protein_id=WP_001497945.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 36838 37149 . + . ID=gene-AD39_RS0125595;Name=AD39_RS0125595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125595 NZ_JJLH01000058.1 Protein Homology CDS 36838 37149 . + 0 ID=cds-WP_000897305.1;Parent=gene-AD39_RS0125595;Dbxref=GenBank:WP_000897305.1;Name=WP_000897305.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000897300.1;locus_tag=AD39_RS0125595;product=hypothetical protein;protein_id=WP_000897305.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 37150 37440 . + . ID=gene-AD39_RS03110;Name=nadS;gbkey=Gene;gene=nadS;gene_biotype=protein_coding;locus_tag=AD39_RS03110;old_locus_tag=AD39_4469 NZ_JJLH01000058.1 Protein Homology CDS 37150 37440 . + 0 ID=cds-WP_000356397.1;Parent=gene-AD39_RS03110;Dbxref=GenBank:WP_000356397.1;Name=WP_000356397.1;gbkey=CDS;gene=nadS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000356400.1;locus_tag=AD39_RS03110;product=NadS family protein;protein_id=WP_000356397.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 38026 38244 . + . ID=gene-AD39_RS03105;Name=yiiE;gbkey=Gene;gene=yiiE;gene_biotype=protein_coding;locus_tag=AD39_RS03105;old_locus_tag=AD39_4471 NZ_JJLH01000058.1 Protein Homology CDS 38026 38244 . + 0 ID=cds-WP_001315930.1;Parent=gene-AD39_RS03105;Dbxref=GenBank:WP_001315930.1;Name=WP_001315930.1;Ontology_term=GO:0006276,GO:0006355,GO:0032993;gbkey=CDS;gene=yiiE;go_component=protein-DNA complex|0032993||IEA;go_process=plasmid maintenance|0006276||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312842.3;locus_tag=AD39_RS03105;product=CopG family transcriptional regulator;protein_id=WP_001315930.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 38464 38706 . + . ID=gene-AD39_RS03100;Name=yiiF;gbkey=Gene;gene=yiiF;gene_biotype=protein_coding;locus_tag=AD39_RS03100;old_locus_tag=AD39_4472 NZ_JJLH01000058.1 Protein Homology CDS 38464 38706 . + 0 ID=cds-WP_001087409.1;Parent=gene-AD39_RS03100;Dbxref=GenBank:WP_001087409.1;Name=WP_001087409.1;gbkey=CDS;gene=yiiF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709694.2;locus_tag=AD39_RS03100;product=protein YiiF;protein_id=WP_001087409.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 39036 39965 . - . ID=gene-AD39_RS03090;Name=fdhE;gbkey=Gene;gene=fdhE;gene_biotype=protein_coding;locus_tag=AD39_RS03090;old_locus_tag=AD39_4474 NZ_JJLH01000058.1 Protein Homology CDS 39036 39965 . - 0 ID=cds-WP_000027708.1;Parent=gene-AD39_RS03090;Dbxref=GenBank:WP_000027708.1;Name=WP_000027708.1;gbkey=CDS;gene=fdhE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005121819.1;locus_tag=AD39_RS03090;product=formate dehydrogenase accessory protein FdhE;protein_id=WP_000027708.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 39962 40597 . - . ID=gene-AD39_RS03085;Name=fdoI;gbkey=Gene;gene=fdoI;gene_biotype=protein_coding;locus_tag=AD39_RS03085;old_locus_tag=AD39_4475 NZ_JJLH01000058.1 Protein Homology CDS 39962 40597 . - 0 ID=cds-WP_000829013.1;Parent=gene-AD39_RS03085;Dbxref=GenBank:WP_000829013.1;Name=WP_000829013.1;gbkey=CDS;gene=fdoI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312845.1;locus_tag=AD39_RS03085;product=formate dehydrogenase cytochrome b556 subunit;protein_id=WP_000829013.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 40594 41496 . - . ID=gene-AD39_RS03080;Name=fdoH;gbkey=Gene;gene=fdoH;gene_biotype=protein_coding;locus_tag=AD39_RS03080;old_locus_tag=AD39_4476 NZ_JJLH01000058.1 Protein Homology CDS 40594 41496 . - 0 ID=cds-WP_032287652.1;Parent=gene-AD39_RS03080;Dbxref=GenBank:WP_032287652.1;Name=WP_032287652.1;gbkey=CDS;gene=fdoH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418329.1;locus_tag=AD39_RS03080;product=formate dehydrogenase O subunit beta;protein_id=WP_032287652.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 41509 44559 . - . ID=gene-AD39_RS03075;Name=fdnG;gbkey=Gene;gene=fdnG;gene_biotype=protein_coding;locus_tag=AD39_RS03075;old_locus_tag=AD39_4477 NZ_JJLH01000058.1 Protein Homology CDS 41509 44559 . - 0 ID=cds-WP_011310337.1;Parent=gene-AD39_RS03075;Dbxref=GenBank:WP_011310337.1;Name=WP_011310337.1;Ontology_term=GO:0015942,GO:0008863,GO:0009055,GO:0043546,GO:0047111,GO:0009326;gbkey=CDS;gene=fdnG;go_component=formate dehydrogenase complex|0009326||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA,electron transfer activity|0009055||IEA,molybdopterin cofactor binding|0043546||IEA,formate dehydrogenase (cytochrome-c-553) activity|0047111||IEA;go_process=formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418330.1;locus_tag=AD39_RS03075;product=formate dehydrogenase-N subunit alpha;protein_id=WP_011310337.1;transl_except=(pos:complement(43972..43974)%2Caa:Sec);transl_table=11 NZ_JJLH01000058.1 RefSeq gene 44753 45586 . + . ID=gene-AD39_RS03065;Name=fdhD;gbkey=Gene;gene=fdhD;gene_biotype=protein_coding;locus_tag=AD39_RS03065;old_locus_tag=AD39_4479 NZ_JJLH01000058.1 Protein Homology CDS 44753 45586 . + 0 ID=cds-WP_000753589.1;Parent=gene-AD39_RS03065;Dbxref=GenBank:WP_000753589.1;Name=WP_000753589.1;Ontology_term=GO:0009061,GO:0015942,GO:0016783,GO:0009326;gbkey=CDS;gene=fdhD;go_component=formate dehydrogenase complex|0009326||IEA;go_function=sulfurtransferase activity|0016783||IEA;go_process=anaerobic respiration|0009061||IEA,formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312848.1;locus_tag=AD39_RS03065;product=formate dehydrogenase accessory sulfurtransferase FdhD;protein_id=WP_000753589.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 45739 46779 . + . ID=gene-AD39_RS03060;Name=yiiG;gbkey=Gene;gene=yiiG;gene_biotype=protein_coding;locus_tag=AD39_RS03060;old_locus_tag=AD39_4480 NZ_JJLH01000058.1 Protein Homology CDS 45739 46779 . + 0 ID=cds-WP_001307491.1;Parent=gene-AD39_RS03060;Dbxref=GenBank:WP_001307491.1;Name=WP_001307491.1;gbkey=CDS;gene=yiiG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418332.1;locus_tag=AD39_RS03060;product=YiiG family protein;protein_id=WP_001307491.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 46829 48577 . - . ID=gene-AD39_RS03055;Name=frvR;gbkey=Gene;gene=frvR;gene_biotype=protein_coding;locus_tag=AD39_RS03055;old_locus_tag=AD39_4481 NZ_JJLH01000058.1 Protein Homology CDS 46829 48577 . - 0 ID=cds-WP_000931337.1;Parent=gene-AD39_RS03055;Dbxref=GenBank:WP_000931337.1;Name=WP_000931337.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=frvR;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312850.1;locus_tag=AD39_RS03055;product=putative frv operon regulatory protein;protein_id=WP_000931337.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 48577 49647 . - . ID=gene-AD39_RS03050;Name=frvX;gbkey=Gene;gene=frvX;gene_biotype=protein_coding;locus_tag=AD39_RS03050;old_locus_tag=AD39_4482 NZ_JJLH01000058.1 Protein Homology CDS 48577 49647 . - 0 ID=cds-WP_032254848.1;Parent=gene-AD39_RS03050;Dbxref=GenBank:WP_032254848.1;Name=WP_032254848.1;gbkey=CDS;gene=frvX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418334.1;locus_tag=AD39_RS03050;product=aminopeptidase;protein_id=WP_032254848.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 49637 51088 . - . ID=gene-AD39_RS03045;Name=frvB;gbkey=Gene;gene=frvB;gene_biotype=protein_coding;locus_tag=AD39_RS03045;old_locus_tag=AD39_4483 NZ_JJLH01000058.1 Protein Homology CDS 49637 51088 . - 0 ID=cds-WP_000446023.1;Parent=gene-AD39_RS03045;Dbxref=GenBank:WP_000446023.1;Name=WP_000446023.1;gbkey=CDS;gene=frvB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418335.4;locus_tag=AD39_RS03045;product=PTS fructose-like transporter subunit IIBC;protein_id=WP_000446023.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 51099 51545 . - . ID=gene-AD39_RS03040;Name=frvA;gbkey=Gene;gene=frvA;gene_biotype=protein_coding;locus_tag=AD39_RS03040;old_locus_tag=AD39_4484 NZ_JJLH01000058.1 Protein Homology CDS 51099 51545 . - 0 ID=cds-WP_032254847.1;Parent=gene-AD39_RS03040;Dbxref=GenBank:WP_032254847.1;Name=WP_032254847.1;gbkey=CDS;gene=frvA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709704.1;locus_tag=AD39_RS03040;product=PTS fructose transporter subunit IIA;protein_id=WP_032254847.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 51858 52172 . - . ID=gene-AD39_RS03035;Name=rhaM;gbkey=Gene;gene=rhaM;gene_biotype=protein_coding;locus_tag=AD39_RS03035;old_locus_tag=AD39_4485 NZ_JJLH01000058.1 Protein Homology CDS 51858 52172 . - 0 ID=cds-WP_001364835.1;Parent=gene-AD39_RS03035;Dbxref=GenBank:WP_001364835.1;Name=WP_001364835.1;Ontology_term=GO:0019299,GO:0016857,GO:0062192,GO:0005737;gbkey=CDS;gene=rhaM;go_component=cytoplasm|0005737||IEA;go_function=racemase and epimerase activity%2C acting on carbohydrates and derivatives|0016857||IEA,L-rhamnose mutarotase activity|0062192||IEA;go_process=rhamnose metabolic process|0019299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418337.1;locus_tag=AD39_RS03035;product=L-rhamnose mutarotase;protein_id=WP_001364835.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 52182 53006 . - . ID=gene-AD39_RS03030;Name=rhaD;gbkey=Gene;gene=rhaD;gene_biotype=protein_coding;locus_tag=AD39_RS03030;old_locus_tag=AD39_4486 NZ_JJLH01000058.1 Protein Homology CDS 52182 53006 . - 0 ID=cds-WP_001179766.1;Parent=gene-AD39_RS03030;Dbxref=GenBank:WP_001179766.1;Name=WP_001179766.1;gbkey=CDS;gene=rhaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418338.1;locus_tag=AD39_RS03030;product=rhamnulose-1-phosphate aldolase;protein_id=WP_001179766.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 53181 54440 . - . ID=gene-AD39_RS03025;Name=rhaA;gbkey=Gene;gene=rhaA;gene_biotype=protein_coding;locus_tag=AD39_RS03025;old_locus_tag=AD39_4487 NZ_JJLH01000058.1 Protein Homology CDS 53181 54440 . - 0 ID=cds-WP_001325794.1;Parent=gene-AD39_RS03025;Dbxref=GenBank:WP_001325794.1;Name=WP_001325794.1;Ontology_term=GO:0019299,GO:0008740,GO:0030145;gbkey=CDS;gene=rhaA;go_function=L-rhamnose isomerase activity|0008740||IEA,manganese ion binding|0030145||IEA;go_process=rhamnose metabolic process|0019299||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026276.1;locus_tag=AD39_RS03025;product=L-rhamnose isomerase;protein_id=WP_001325794.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 54437 55906 . - . ID=gene-AD39_RS03020;Name=rhaB;gbkey=Gene;gene=rhaB;gene_biotype=protein_coding;locus_tag=AD39_RS03020;old_locus_tag=AD39_4488 NZ_JJLH01000058.1 Protein Homology CDS 54437 55906 . - 0 ID=cds-WP_000144049.1;Parent=gene-AD39_RS03020;Dbxref=GenBank:WP_000144049.1;Name=WP_000144049.1;Ontology_term=GO:0005975,GO:0019301,GO:0008993;gbkey=CDS;gene=rhaB;go_function=rhamnulokinase activity|0008993||IEA;go_process=carbohydrate metabolic process|0005975||IEA,rhamnose catabolic process|0019301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312858.1;locus_tag=AD39_RS03020;product=rhamnulokinase;protein_id=WP_000144049.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 56194 57030 . + . ID=gene-AD39_RS03010;Name=rhaS;gbkey=Gene;gene=rhaS;gene_biotype=protein_coding;locus_tag=AD39_RS03010;old_locus_tag=AD39_4490 NZ_JJLH01000058.1 Protein Homology CDS 56194 57030 . + 0 ID=cds-WP_000217137.1;Parent=gene-AD39_RS03010;Dbxref=GenBank:WP_000217137.1;Name=WP_000217137.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=rhaS;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418341.1;locus_tag=AD39_RS03010;product=HTH-type transcriptional activator RhaS;protein_id=WP_000217137.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 57104 57952 . + . ID=gene-AD39_RS03005;Name=rhaR;gbkey=Gene;gene=rhaR;gene_biotype=protein_coding;locus_tag=AD39_RS03005;old_locus_tag=AD39_4491 NZ_JJLH01000058.1 Protein Homology CDS 57104 57952 . + 0 ID=cds-WP_001309108.1;Parent=gene-AD39_RS03005;Dbxref=GenBank:WP_001309108.1;Name=WP_001309108.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=rhaR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418342.2;locus_tag=AD39_RS03005;product=HTH-type transcriptional activator RhaR;protein_id=WP_001309108.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 57949 58983 . - . ID=gene-AD39_RS03000;Name=rhaT;gbkey=Gene;gene=rhaT;gene_biotype=protein_coding;locus_tag=AD39_RS03000;old_locus_tag=AD39_4492 NZ_JJLH01000058.1 Protein Homology CDS 57949 58983 . - 0 ID=cds-WP_000063504.1;Parent=gene-AD39_RS03000;Dbxref=GenBank:WP_000063504.1;Name=WP_000063504.1;Ontology_term=GO:0008645,GO:0015153;gbkey=CDS;gene=rhaT;go_function=rhamnose transmembrane transporter activity|0015153||IEA;go_process=hexose transmembrane transport|0008645||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418343.1;locus_tag=AD39_RS03000;product=L-rhamnose/proton symporter RhaT;protein_id=WP_000063504.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 59268 59888 . + . ID=gene-AD39_RS02995;Name=sodA;gbkey=Gene;gene=sodA;gene_biotype=protein_coding;locus_tag=AD39_RS02995;old_locus_tag=AD39_4493 NZ_JJLH01000058.1 Protein Homology CDS 59268 59888 . + 0 ID=cds-WP_001297064.1;Parent=gene-AD39_RS02995;Dbxref=GenBank:WP_001297064.1;Name=WP_001297064.1;Ontology_term=GO:0006801,GO:0004784;gbkey=CDS;gene=sodA;go_function=superoxide dismutase activity|0004784||IEA;go_process=superoxide metabolic process|0006801||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010345169.1;locus_tag=AD39_RS02995;product=superoxide dismutase [Mn];protein_id=WP_001297064.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 60148 61131 . + . ID=gene-AD39_RS02985;Name=kdgT;gbkey=Gene;gene=kdgT;gene_biotype=protein_coding;locus_tag=AD39_RS02985;old_locus_tag=AD39_4495 NZ_JJLH01000058.1 Protein Homology CDS 60148 61131 . + 0 ID=cds-WP_001166063.1;Parent=gene-AD39_RS02985;Dbxref=GenBank:WP_001166063.1;Name=WP_001166063.1;Ontology_term=GO:0046411,GO:0015649,GO:0016020;gbkey=CDS;gene=kdgT;go_component=membrane|0016020||IEA;go_function=2-keto-3-deoxygluconate:proton symporter activity|0015649||IEA;go_process=2-keto-3-deoxygluconate transmembrane transport|0046411||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709713.2;locus_tag=AD39_RS02985;product=2-keto-3-deoxygluconate transporter;protein_id=WP_001166063.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 61280 61954 . + . ID=gene-AD39_RS02980;Name=yiiM;gbkey=Gene;gene=yiiM;gene_biotype=protein_coding;locus_tag=AD39_RS02980;old_locus_tag=AD39_4496 NZ_JJLH01000058.1 Protein Homology CDS 61280 61954 . + 0 ID=cds-WP_001270260.1;Parent=gene-AD39_RS02980;Dbxref=GenBank:WP_001270260.1;Name=WP_001270260.1;Ontology_term=GO:0003824,GO:0030151,GO:0030170;gbkey=CDS;gene=yiiM;go_function=catalytic activity|0003824||IEA,molybdenum ion binding|0030151||IEA,pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418346.2;locus_tag=AD39_RS02980;product=6-hydroxyaminopurine reductase;protein_id=WP_001270260.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 62060 63433 . - . ID=gene-AD39_RS02975;Name=cpxA;gbkey=Gene;gene=cpxA;gene_biotype=protein_coding;locus_tag=AD39_RS02975;old_locus_tag=AD39_4497 NZ_JJLH01000058.1 Protein Homology CDS 62060 63433 . - 0 ID=cds-WP_000580417.1;Parent=gene-AD39_RS02975;Dbxref=GenBank:WP_000580417.1;Name=WP_000580417.1;Ontology_term=GO:0007165,GO:0000155;gbkey=CDS;gene=cpxA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312864.1;locus_tag=AD39_RS02975;product=envelope stress sensor histidine kinase CpxA;protein_id=WP_000580417.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 63430 64128 . - . ID=gene-AD39_RS02970;Name=cpxR;gbkey=Gene;gene=cpxR;gene_biotype=protein_coding;locus_tag=AD39_RS02970;old_locus_tag=AD39_4498 NZ_JJLH01000058.1 Protein Homology CDS 63430 64128 . - 0 ID=cds-WP_001033722.1;Parent=gene-AD39_RS02970;Dbxref=GenBank:WP_001033722.1;Name=WP_001033722.1;gbkey=CDS;gene=cpxR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001033718.1;locus_tag=AD39_RS02970;product=envelope stress response regulator transcription factor CpxR;protein_id=WP_001033722.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 64278 64778 . + . ID=gene-AD39_RS02965;Name=cpxP;gbkey=Gene;gene=cpxP;gene_biotype=protein_coding;locus_tag=AD39_RS02965;old_locus_tag=AD39_4499 NZ_JJLH01000058.1 Protein Homology CDS 64278 64778 . + 0 ID=cds-WP_001223800.1;Parent=gene-AD39_RS02965;Dbxref=GenBank:WP_001223800.1;Name=WP_001223800.1;gbkey=CDS;gene=cpxP;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026277.1;locus_tag=AD39_RS02965;product=cell-envelope stress modulator CpxP;protein_id=WP_001223800.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 64928 65830 . + . ID=gene-AD39_RS02960;Name=fieF;gbkey=Gene;gene=fieF;gene_biotype=protein_coding;locus_tag=AD39_RS02960;old_locus_tag=AD39_4500 NZ_JJLH01000058.1 Protein Homology CDS 64928 65830 . + 0 ID=cds-WP_001076742.1;Parent=gene-AD39_RS02960;Dbxref=GenBank:WP_001076742.1;Name=WP_001076742.1;Note=FieF%2C a metal efflux transporter%2C is a member of the CDF (cation diffusion facilitator) family of transporters.;Ontology_term=GO:0006812,GO:0055085,GO:0008324,GO:0016020;gbkey=CDS;gene=fieF;go_component=membrane|0016020||IEA;go_function=monoatomic cation transmembrane transporter activity|0008324||IEA;go_process=monoatomic cation transport|0006812||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312867.1;locus_tag=AD39_RS02960;product=CDF family cation-efflux transporter FieF;protein_id=WP_001076742.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 66011 66973 . + . ID=gene-AD39_RS02955;Name=pfkA;gbkey=Gene;gene=pfkA;gene_biotype=protein_coding;locus_tag=AD39_RS02955;old_locus_tag=AD39_4501 NZ_JJLH01000058.1 Protein Homology CDS 66011 66973 . + 0 ID=cds-WP_000591795.1;Parent=gene-AD39_RS02955;Dbxref=GenBank:WP_000591795.1;Name=WP_000591795.1;Ontology_term=GO:0006002,GO:0006096,GO:0005524;gbkey=CDS;gene=pfkA;go_function=ATP binding|0005524||IEA;go_process=fructose 6-phosphate metabolic process|0006002||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014072359.1;locus_tag=AD39_RS02955;product=6-phosphofructokinase;protein_id=WP_000591795.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 67293 68282 . + . ID=gene-AD39_RS02950;Name=sbp;gbkey=Gene;gene=sbp;gene_biotype=protein_coding;locus_tag=AD39_RS02950;old_locus_tag=AD39_4502 NZ_JJLH01000058.1 Protein Homology CDS 67293 68282 . + 0 ID=cds-WP_001045689.1;Parent=gene-AD39_RS02950;Dbxref=GenBank:WP_001045689.1;Name=WP_001045689.1;gbkey=CDS;gene=sbp;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005133064.1;locus_tag=AD39_RS02950;product=sulfate/thiosulfate ABC transporter substrate-binding protein Sbp;protein_id=WP_001045689.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 68389 69144 . + . ID=gene-AD39_RS02945;Name=cdh;gbkey=Gene;gene=cdh;gene_biotype=protein_coding;locus_tag=AD39_RS02945;old_locus_tag=AD39_4503 NZ_JJLH01000058.1 Protein Homology CDS 68389 69144 . + 0 ID=cds-WP_000708998.1;Parent=gene-AD39_RS02945;Dbxref=GenBank:WP_000708998.1;Name=WP_000708998.1;Ontology_term=GO:0008654,GO:0008715,GO:0016020;gbkey=CDS;gene=cdh;go_component=membrane|0016020||IEA;go_function=CDP-diacylglycerol diphosphatase activity|0008715||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312870.1;locus_tag=AD39_RS02945;product=CDP-diacylglycerol diphosphatase;protein_id=WP_000708998.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 69199 69966 . - . ID=gene-AD39_RS02940;Name=tpiA;gbkey=Gene;gene=tpiA;gene_biotype=protein_coding;locus_tag=AD39_RS02940;old_locus_tag=AD39_4504 NZ_JJLH01000058.1 Protein Homology CDS 69199 69966 . - 0 ID=cds-WP_001216325.1;Parent=gene-AD39_RS02940;Dbxref=GenBank:WP_001216325.1;Name=WP_001216325.1;Ontology_term=GO:0006096,GO:0004807;gbkey=CDS;gene=tpiA;go_function=triose-phosphate isomerase activity|0004807||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312871.1;locus_tag=AD39_RS02940;product=triose-phosphate isomerase;protein_id=WP_001216325.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 70074 70673 . - . ID=gene-AD39_RS02935;Name=yiiQ;gbkey=Gene;gene=yiiQ;gene_biotype=protein_coding;locus_tag=AD39_RS02935;old_locus_tag=AD39_4505 NZ_JJLH01000058.1 Protein Homology CDS 70074 70673 . - 0 ID=cds-WP_000802226.1;Parent=gene-AD39_RS02935;Dbxref=GenBank:WP_000802226.1;Name=WP_000802226.1;gbkey=CDS;gene=yiiQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312872.1;locus_tag=AD39_RS02935;product=YiiQ family protein;protein_id=WP_000802226.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 70774 71214 . + . ID=gene-AD39_RS02930;Name=yiiR;gbkey=Gene;gene=yiiR;gene_biotype=protein_coding;locus_tag=AD39_RS02930;old_locus_tag=AD39_4506 NZ_JJLH01000058.1 Protein Homology CDS 70774 71214 . + 0 ID=cds-WP_000155257.1;Parent=gene-AD39_RS02930;Dbxref=GenBank:WP_000155257.1;Name=WP_000155257.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yiiR;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312873.1;locus_tag=AD39_RS02930;product=DUF805 domain-containing protein;protein_id=WP_000155257.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 71426 71725 . + . ID=gene-AD39_RS02925;Name=yiiS;gbkey=Gene;gene=yiiS;gene_biotype=protein_coding;locus_tag=AD39_RS02925;old_locus_tag=AD39_4507 NZ_JJLH01000058.1 Protein Homology CDS 71426 71725 . + 0 ID=cds-WP_000655986.1;Parent=gene-AD39_RS02925;Dbxref=GenBank:WP_000655986.1;Name=WP_000655986.1;gbkey=CDS;gene=yiiS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312874.1;locus_tag=AD39_RS02925;product=DUF406 domain-containing protein;protein_id=WP_000655986.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 71752 72180 . + . ID=gene-AD39_RS02920;Name=uspD;gbkey=Gene;gene=uspD;gene_biotype=protein_coding;locus_tag=AD39_RS02920;old_locus_tag=AD39_4508 NZ_JJLH01000058.1 Protein Homology CDS 71752 72180 . + 0 ID=cds-WP_000323556.1;Parent=gene-AD39_RS02920;Dbxref=GenBank:WP_000323556.1;Name=WP_000323556.1;gbkey=CDS;gene=uspD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418358.1;locus_tag=AD39_RS02920;product=universal stress protein UspD;protein_id=WP_000323556.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 72185 72931 . - . ID=gene-AD39_RS02915;Name=fpr;gbkey=Gene;gene=fpr;gene_biotype=protein_coding;locus_tag=AD39_RS02915;old_locus_tag=AD39_4509 NZ_JJLH01000058.1 Protein Homology CDS 72185 72931 . - 0 ID=cds-WP_000796320.1;Parent=gene-AD39_RS02915;Dbxref=GenBank:WP_000796320.1;Name=WP_000796320.1;Ontology_term=GO:0004324;gbkey=CDS;gene=fpr;go_function=ferredoxin-NADP+ reductase activity|0004324||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709728.1;locus_tag=AD39_RS02915;product=ferredoxin--NADP(+) reductase;protein_id=WP_000796320.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 73028 74038 . - . ID=gene-AD39_RS02910;Name=glpX;gbkey=Gene;gene=glpX;gene_biotype=protein_coding;locus_tag=AD39_RS02910;old_locus_tag=AD39_4510 NZ_JJLH01000058.1 Protein Homology CDS 73028 74038 . - 0 ID=cds-WP_001250644.1;Parent=gene-AD39_RS02910;Dbxref=GenBank:WP_001250644.1;Name=WP_001250644.1;Ontology_term=GO:0006071,GO:0006094,GO:0042132;gbkey=CDS;gene=glpX;go_function=fructose 1%2C6-bisphosphate 1-phosphatase activity|0042132||IEA;go_process=glycerol metabolic process|0006071||IEA,gluconeogenesis|0006094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418360.1;locus_tag=AD39_RS02910;product=class II fructose-bisphosphatase;protein_id=WP_001250644.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 74174 75682 . - . ID=gene-AD39_RS02905;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;locus_tag=AD39_RS02905;old_locus_tag=AD39_4511 NZ_JJLH01000058.1 Protein Homology CDS 74174 75682 . - 0 ID=cds-WP_000136788.1;Parent=gene-AD39_RS02905;Dbxref=GenBank:WP_000136788.1;Name=WP_000136788.1;Ontology_term=GO:0006072,GO:0004370;gbkey=CDS;gene=glpK;go_function=glycerol kinase activity|0004370||IEA;go_process=glycerol-3-phosphate metabolic process|0006072||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312878.1;locus_tag=AD39_RS02905;product=glycerol kinase GlpK;protein_id=WP_000136788.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 75705 76550 . - . ID=gene-AD39_RS02900;Name=glpF;gbkey=Gene;gene=glpF;gene_biotype=protein_coding;locus_tag=AD39_RS02900;old_locus_tag=AD39_4512 NZ_JJLH01000058.1 Protein Homology CDS 75705 76550 . - 0 ID=cds-WP_000084268.1;Parent=gene-AD39_RS02900;Dbxref=GenBank:WP_000084268.1;Name=WP_000084268.1;gbkey=CDS;gene=glpF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312879.1;locus_tag=AD39_RS02900;product=glycerol uptake facilitator protein GlpF;protein_id=WP_000084268.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 76976 77221 . + . ID=gene-AD39_RS02895;Name=zapB;gbkey=Gene;gene=zapB;gene_biotype=protein_coding;locus_tag=AD39_RS02895;old_locus_tag=AD39_4513 NZ_JJLH01000058.1 Protein Homology CDS 76976 77221 . + 0 ID=cds-WP_001296623.1;Parent=gene-AD39_RS02895;Dbxref=GenBank:WP_001296623.1;Name=WP_001296623.1;gbkey=CDS;gene=zapB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418363.1;locus_tag=AD39_RS02895;product=septal ring assembly protein ZapB;protein_id=WP_001296623.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 77306 77791 . - . ID=gene-AD39_RS02890;Name=rraA;gbkey=Gene;gene=rraA;gene_biotype=protein_coding;locus_tag=AD39_RS02890;old_locus_tag=AD39_4514 NZ_JJLH01000058.1 Protein Homology CDS 77306 77791 . - 0 ID=cds-WP_000872908.1;Parent=gene-AD39_RS02890;Dbxref=GenBank:WP_000872908.1;Name=WP_000872908.1;Ontology_term=GO:0051252,GO:0008428;gbkey=CDS;gene=rraA;go_function=ribonuclease inhibitor activity|0008428||IEA;go_process=regulation of RNA metabolic process|0051252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001392924.1;locus_tag=AD39_RS02890;product=ribonuclease E activity regulator RraA;protein_id=WP_000872908.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 77884 78810 . - . ID=gene-AD39_RS02885;Name=menA;gbkey=Gene;gene=menA;gene_biotype=protein_coding;locus_tag=AD39_RS02885;old_locus_tag=AD39_4515 NZ_JJLH01000058.1 Protein Homology CDS 77884 78810 . - 0 ID=cds-WP_000139496.1;Parent=gene-AD39_RS02885;Dbxref=GenBank:WP_000139496.1;Name=WP_000139496.1;gbkey=CDS;gene=menA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418365.1;locus_tag=AD39_RS02885;product=1%2C4-dihydroxy-2-naphthoate polyprenyltransferase;protein_id=WP_000139496.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 78877 80208 . - . ID=gene-AD39_RS02880;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=AD39_RS02880;old_locus_tag=AD39_4516 NZ_JJLH01000058.1 Protein Homology CDS 78877 80208 . - 0 ID=cds-WP_001472636.1;Parent=gene-AD39_RS02880;Dbxref=GenBank:WP_001472636.1;Name=WP_001472636.1;Ontology_term=GO:0006508,GO:0004176,GO:0005524,GO:0009376;gbkey=CDS;gene=hslU;go_component=HslUV protease complex|0009376||IEA;go_function=ATP-dependent peptidase activity|0004176||IEA,ATP binding|0005524||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019841241.1;locus_tag=AD39_RS02880;product=HslU--HslV peptidase ATPase subunit;protein_id=WP_001472636.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 80218 80748 . - . ID=gene-AD39_RS02875;Name=hslV;gbkey=Gene;gene=hslV;gene_biotype=protein_coding;locus_tag=AD39_RS02875;old_locus_tag=AD39_4517 NZ_JJLH01000058.1 Protein Homology CDS 80218 80748 . - 0 ID=cds-WP_000208242.1;Parent=gene-AD39_RS02875;Dbxref=GenBank:WP_000208242.1;Name=WP_000208242.1;Ontology_term=GO:0051603,GO:0004298,GO:0009376;gbkey=CDS;gene=hslV;go_component=HslUV protease complex|0009376||IEA;go_function=threonine-type endopeptidase activity|0004298||IEA;go_process=proteolysis involved in protein catabolic process|0051603||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312886.1;locus_tag=AD39_RS02875;product=ATP-dependent protease subunit HslV;protein_id=WP_000208242.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 80841 81800 . - . ID=gene-AD39_RS02870;Name=ftsN;gbkey=Gene;gene=ftsN;gene_biotype=protein_coding;locus_tag=AD39_RS02870;old_locus_tag=AD39_4518 NZ_JJLH01000058.1 Protein Homology CDS 80841 81800 . - 0 ID=cds-WP_000068834.1;Parent=gene-AD39_RS02870;Dbxref=GenBank:WP_000068834.1;Name=WP_000068834.1;Ontology_term=GO:0042834;gbkey=CDS;gene=ftsN;go_function=peptidoglycan binding|0042834||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709737.1;locus_tag=AD39_RS02870;product=cell division protein FtsN;protein_id=WP_000068834.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 81892 82917 . - . ID=gene-AD39_RS02865;Name=cytR;gbkey=Gene;gene=cytR;gene_biotype=protein_coding;locus_tag=AD39_RS02865;old_locus_tag=AD39_4519 NZ_JJLH01000058.1 Protein Homology CDS 81892 82917 . - 0 ID=cds-WP_000644904.1;Parent=gene-AD39_RS02865;Dbxref=GenBank:WP_000644904.1;Name=WP_000644904.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=cytR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312888.1;locus_tag=AD39_RS02865;product=DNA-binding transcriptional regulator CytR;protein_id=WP_000644904.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 83073 85271 . - . ID=gene-AD39_RS02860;Name=priA;gbkey=Gene;gene=priA;gene_biotype=protein_coding;locus_tag=AD39_RS02860;old_locus_tag=AD39_4521 NZ_JJLH01000058.1 Protein Homology CDS 83073 85271 . - 0 ID=cds-WP_032287653.1;Parent=gene-AD39_RS02860;Dbxref=GenBank:WP_032287653.1;Name=WP_032287653.1;gbkey=CDS;gene=priA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709739.2;locus_tag=AD39_RS02860;product=primosomal protein N';protein_id=WP_032287653.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 85474 85686 . + . ID=gene-AD39_RS02855;Name=rpmE;gbkey=Gene;gene=rpmE;gene_biotype=protein_coding;locus_tag=AD39_RS02855;old_locus_tag=AD39_4522 NZ_JJLH01000058.1 Protein Homology CDS 85474 85686 . + 0 ID=cds-WP_000710769.1;Parent=gene-AD39_RS02855;Dbxref=GenBank:WP_000710769.1;Name=WP_000710769.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rpmE;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312890.1;locus_tag=AD39_RS02855;product=50S ribosomal protein L31;protein_id=WP_000710769.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 85741 86364 . - . ID=gene-AD39_RS02850;Name=AD39_RS02850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS02850;old_locus_tag=AD39_4523 NZ_JJLH01000058.1 Protein Homology CDS 85741 86364 . - 0 ID=cds-WP_001402674.1;Parent=gene-AD39_RS02850;Dbxref=GenBank:WP_001402674.1;Name=WP_001402674.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001402674.1;locus_tag=AD39_RS02850;product=TIGR02117 family protein;protein_id=WP_001402674.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 86371 86979 . - . ID=gene-AD39_RS02845;Name=yiiX;gbkey=Gene;gene=yiiX;gene_biotype=protein_coding;locus_tag=AD39_RS02845;old_locus_tag=AD39_4524 NZ_JJLH01000058.1 Protein Homology CDS 86371 86979 . - 0 ID=cds-WP_001402675.1;Parent=gene-AD39_RS02845;Dbxref=GenBank:WP_001402675.1;Name=WP_001402675.1;gbkey=CDS;gene=yiiX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312893.1;locus_tag=AD39_RS02845;product=YiiX family permuted papain-like enzyme;protein_id=WP_001402675.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 87039 87356 . - . ID=gene-AD39_RS02840;Name=metJ;gbkey=Gene;gene=metJ;gene_biotype=protein_coding;locus_tag=AD39_RS02840;old_locus_tag=AD39_4525 NZ_JJLH01000058.1 Protein Homology CDS 87039 87356 . - 0 ID=cds-WP_000852812.1;Parent=gene-AD39_RS02840;Dbxref=GenBank:WP_000852812.1;Name=WP_000852812.1;gbkey=CDS;gene=metJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015855437.1;locus_tag=AD39_RS02840;product=met regulon transcriptional regulator MetJ;protein_id=WP_000852812.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 87633 88793 . + . ID=gene-AD39_RS02835;Name=metB;gbkey=Gene;gene=metB;gene_biotype=protein_coding;locus_tag=AD39_RS02835;old_locus_tag=AD39_4526 NZ_JJLH01000058.1 Protein Homology CDS 87633 88793 . + 0 ID=cds-WP_001297633.1;Parent=gene-AD39_RS02835;Dbxref=GenBank:WP_001297633.1;Name=WP_001297633.1;Ontology_term=GO:0019346,GO:0003824,GO:0030170;gbkey=CDS;gene=metB;go_function=catalytic activity|0003824||IEA,pyridoxal phosphate binding|0030170||IEA;go_process=transsulfuration|0019346||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418374.1;locus_tag=AD39_RS02835;product=cystathionine gamma-synthase;protein_id=WP_001297633.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 88796 91228 . + . ID=gene-AD39_RS02830;Name=metL;gbkey=Gene;gene=metL;gene_biotype=protein_coding;locus_tag=AD39_RS02830;old_locus_tag=AD39_4527 NZ_JJLH01000058.1 Protein Homology CDS 88796 91228 . + 0 ID=cds-WP_000110772.1;Parent=gene-AD39_RS02830;Dbxref=GenBank:WP_000110772.1;Name=WP_000110772.1;gbkey=CDS;gene=metL;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000110794.1;locus_tag=AD39_RS02830;product=bifunctional aspartate kinase/homoserine dehydrogenase II;protein_id=WP_000110772.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 91367 91501 . - . ID=gene-AD39_RS30000;Name=AD39_RS30000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30000;old_locus_tag=AD39_4528 NZ_JJLH01000058.1 GeneMarkS-2+ CDS 91367 91501 . - 0 ID=cds-WP_032283632.1;Parent=gene-AD39_RS30000;Dbxref=GenBank:WP_032283632.1;Name=WP_032283632.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS30000;product=hypothetical protein;protein_id=WP_032283632.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 91577 92467 . + . ID=gene-AD39_RS02820;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=AD39_RS02820;old_locus_tag=AD39_4529 NZ_JJLH01000058.1 Protein Homology CDS 91577 92467 . + 0 ID=cds-WP_000007523.1;Parent=gene-AD39_RS02820;Dbxref=GenBank:WP_000007523.1;Name=WP_000007523.1;Ontology_term=GO:0009086,GO:0004489;gbkey=CDS;gene=metF;go_function=methylenetetrahydrofolate reductase (NAD(P)H) activity|0004489||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418376.1;locus_tag=AD39_RS02820;product=methylenetetrahydrofolate reductase;protein_id=WP_000007523.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 92796 94976 . + . ID=gene-AD39_RS02815;Name=katG;gbkey=Gene;gene=katG;gene_biotype=protein_coding;locus_tag=AD39_RS02815;old_locus_tag=AD39_4530 NZ_JJLH01000058.1 Protein Homology CDS 92796 94976 . + 0 ID=cds-WP_023155634.1;Parent=gene-AD39_RS02815;Dbxref=GenBank:WP_023155634.1;Name=WP_023155634.1;Ontology_term=GO:0006979,GO:0004096,GO:0004601,GO:0020037;gbkey=CDS;gene=katG;go_function=catalase activity|0004096||IEA,peroxidase activity|0004601||IEA,heme binding|0020037||IEA;go_process=response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312898.1;locus_tag=AD39_RS02815;product=catalase/peroxidase HPI;protein_id=WP_023155634.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 95070 95975 . + . ID=gene-AD39_RS02810;Name=yijE;gbkey=Gene;gene=yijE;gene_biotype=protein_coding;locus_tag=AD39_RS02810;old_locus_tag=AD39_4531 NZ_JJLH01000058.1 Protein Homology CDS 95070 95975 . + 0 ID=cds-WP_001271262.1;Parent=gene-AD39_RS02810;Dbxref=GenBank:WP_001271262.1;Name=WP_001271262.1;gbkey=CDS;gene=yijE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418378.4;locus_tag=AD39_RS02810;product=cystine transporter YijE;protein_id=WP_001271262.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 96002 96619 . - . ID=gene-AD39_RS02805;Name=yijF;gbkey=Gene;gene=yijF;gene_biotype=protein_coding;locus_tag=AD39_RS02805;old_locus_tag=AD39_4532 NZ_JJLH01000058.1 Protein Homology CDS 96002 96619 . - 0 ID=cds-WP_032283634.1;Parent=gene-AD39_RS02805;Dbxref=GenBank:WP_032283634.1;Name=WP_032283634.1;gbkey=CDS;gene=yijF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418379.1;locus_tag=AD39_RS02805;product=DUF1287 domain-containing protein;protein_id=WP_032283634.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 96894 97997 . - . ID=gene-AD39_RS02800;Name=gldA;gbkey=Gene;gene=gldA;gene_biotype=protein_coding;locus_tag=AD39_RS02800;old_locus_tag=AD39_4533 NZ_JJLH01000058.1 Protein Homology CDS 96894 97997 . - 0 ID=cds-WP_000374004.1;Parent=gene-AD39_RS02800;Dbxref=GenBank:WP_000374004.1;Name=WP_000374004.1;Ontology_term=GO:0019588,GO:0051596,GO:0008888,GO:0019147;gbkey=CDS;gene=gldA;go_function=glycerol dehydrogenase (NAD+) activity|0008888||IEA,(R)-aminopropanol dehydrogenase activity|0019147||IEA;go_process=anaerobic glycerol catabolic process|0019588||IEA,methylglyoxal catabolic process|0051596||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418380.4;locus_tag=AD39_RS02800;product=bifunctional L-1%2C2-propanediol dehydrogenase/glycerol dehydrogenase;protein_id=WP_000374004.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 98008 98670 . - . ID=gene-AD39_RS02795;Name=fsa;gbkey=Gene;gene=fsa;gene_biotype=protein_coding;locus_tag=AD39_RS02795;old_locus_tag=AD39_4534 NZ_JJLH01000058.1 Protein Homology CDS 98008 98670 . - 0 ID=cds-WP_000424841.1;Parent=gene-AD39_RS02795;Dbxref=GenBank:WP_000424841.1;Name=WP_000424841.1;Ontology_term=GO:0005975,GO:0016832;gbkey=CDS;gene=fsa;go_function=aldehyde-lyase activity|0016832||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418381.1;locus_tag=AD39_RS02795;product=fructose-6-phosphate aldolase;protein_id=WP_000424841.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 98682 101183 . - . ID=gene-AD39_RS02790;Name=ptsP;gbkey=Gene;gene=ptsP;gene_biotype=protein_coding;locus_tag=AD39_RS02790;old_locus_tag=AD39_4535 NZ_JJLH01000058.1 Protein Homology CDS 98682 101183 . - 0 ID=cds-WP_001174095.1;Parent=gene-AD39_RS02790;Dbxref=GenBank:WP_001174095.1;Name=WP_001174095.1;Ontology_term=GO:0009401,GO:0008965;gbkey=CDS;gene=ptsP;go_function=phosphoenolpyruvate-protein phosphotransferase activity|0008965||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312903.2;locus_tag=AD39_RS02790;product=phosphoenolpyruvate--protein phosphotransferase;protein_id=WP_001174095.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 101492 102571 . + . ID=gene-AD39_RS02785;Name=frwC;gbkey=Gene;gene=frwC;gene_biotype=protein_coding;locus_tag=AD39_RS02785;old_locus_tag=AD39_4536 NZ_JJLH01000058.1 Protein Homology CDS 101492 102571 . + 0 ID=cds-WP_001004446.1;Parent=gene-AD39_RS02785;Dbxref=GenBank:WP_001004446.1;Name=WP_001004446.1;Ontology_term=GO:0009401,GO:0008982,GO:0016020;gbkey=CDS;gene=frwC;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418384.1;locus_tag=AD39_RS02785;product=PTS fructose transporter subunit EIIC;protein_id=WP_001004446.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 102586 102906 . + . ID=gene-AD39_RS02780;Name=frwB;gbkey=Gene;gene=frwB;gene_biotype=protein_coding;locus_tag=AD39_RS02780;old_locus_tag=AD39_4537 NZ_JJLH01000058.1 Protein Homology CDS 102586 102906 . + 0 ID=cds-WP_000161265.1;Parent=gene-AD39_RS02780;Dbxref=GenBank:WP_000161265.1;Name=WP_000161265.1;Ontology_term=GO:0009401,GO:0022877;gbkey=CDS;gene=frwB;go_function=protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity|0022877||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312906.1;locus_tag=AD39_RS02780;product=PTS fructose-like transporter subunit IIB;protein_id=WP_000161265.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 102957 105254 . + . ID=gene-AD39_RS02775;Name=pflD;gbkey=Gene;gene=pflD;gene_biotype=protein_coding;locus_tag=AD39_RS02775;old_locus_tag=AD39_4538 NZ_JJLH01000058.1 Protein Homology CDS 102957 105254 . + 0 ID=cds-WP_032287654.1;Parent=gene-AD39_RS02775;Dbxref=GenBank:WP_032287654.1;Name=WP_032287654.1;Ontology_term=GO:0003824;gbkey=CDS;gene=pflD;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709751.1;locus_tag=AD39_RS02775;product=formate C-acetyltransferase;protein_id=WP_032287654.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 105220 106098 . + . ID=gene-AD39_RS02770;Name=pflC;gbkey=Gene;gene=pflC;gene_biotype=protein_coding;locus_tag=AD39_RS02770;old_locus_tag=AD39_4539 NZ_JJLH01000058.1 Protein Homology CDS 105220 106098 . + 0 ID=cds-WP_000204101.1;Parent=gene-AD39_RS02770;Dbxref=GenBank:WP_000204101.1;Name=WP_000204101.1;Ontology_term=GO:0016491,GO:0051536;gbkey=CDS;gene=pflC;go_function=oxidoreductase activity|0016491||IEA,iron-sulfur cluster binding|0051536||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709752.2;locus_tag=AD39_RS02770;product=[formate-C-acetyltransferase]-activating enzyme;protein_id=WP_000204101.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 106100 106441 . + . ID=gene-AD39_RS02765;Name=frwD;gbkey=Gene;gene=frwD;gene_biotype=protein_coding;locus_tag=AD39_RS02765;old_locus_tag=AD39_4540 NZ_JJLH01000058.1 Protein Homology CDS 106100 106441 . + 0 ID=cds-WP_000323849.1;Parent=gene-AD39_RS02765;Dbxref=GenBank:WP_000323849.1;Name=WP_000323849.1;gbkey=CDS;gene=frwD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709753.1;locus_tag=AD39_RS02765;product=PTS fructose-like transporter subunit IIB;protein_id=WP_000323849.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 106428 107279 . - . ID=gene-AD39_RS02760;Name=yijO;gbkey=Gene;gene=yijO;gene_biotype=protein_coding;locus_tag=AD39_RS02760;old_locus_tag=AD39_4541 NZ_JJLH01000058.1 Protein Homology CDS 106428 107279 . - 0 ID=cds-WP_000274608.1;Parent=gene-AD39_RS02760;Dbxref=GenBank:WP_000274608.1;Name=WP_000274608.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=yijO;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418389.1;locus_tag=AD39_RS02760;product=AraC family transcriptional regulator;protein_id=WP_000274608.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 107428 109161 . - . ID=gene-AD39_RS02755;Name=eptC;gbkey=Gene;gene=eptC;gene_biotype=protein_coding;locus_tag=AD39_RS02755;old_locus_tag=AD39_4542 NZ_JJLH01000058.1 Protein Homology CDS 107428 109161 . - 0 ID=cds-WP_000556295.1;Parent=gene-AD39_RS02755;Dbxref=GenBank:WP_000556295.1;Name=WP_000556295.1;gbkey=CDS;gene=eptC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709755.2;locus_tag=AD39_RS02755;product=phosphoethanolamine transferase CptA;protein_id=WP_000556295.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 109344 111995 . - . ID=gene-AD39_RS02750;Name=ppc;gbkey=Gene;gene=ppc;gene_biotype=protein_coding;locus_tag=AD39_RS02750;old_locus_tag=AD39_4543 NZ_JJLH01000058.1 Protein Homology CDS 109344 111995 . - 0 ID=cds-WP_001388743.1;Parent=gene-AD39_RS02750;Dbxref=GenBank:WP_001388743.1;Name=WP_001388743.1;Ontology_term=GO:0006099,GO:0015977,GO:0008964;gbkey=CDS;gene=ppc;go_function=phosphoenolpyruvate carboxylase activity|0008964||IEA;go_process=tricarboxylic acid cycle|0006099||IEA,carbon fixation|0015977||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004203687.1;locus_tag=AD39_RS02750;product=phosphoenolpyruvate carboxylase;protein_id=WP_001388743.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 112347 113498 . - . ID=gene-AD39_RS02745;Name=argE;gbkey=Gene;gene=argE;gene_biotype=protein_coding;locus_tag=AD39_RS02745;old_locus_tag=AD39_4544 NZ_JJLH01000058.1 Protein Homology CDS 112347 113498 . - 0 ID=cds-WP_001298964.1;Parent=gene-AD39_RS02745;Dbxref=GenBank:WP_001298964.1;Name=WP_001298964.1;Ontology_term=GO:0006526,GO:0019213;gbkey=CDS;gene=argE;go_function=deacetylase activity|0019213||IEA;go_process=L-arginine biosynthetic process|0006526||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418392.1;locus_tag=AD39_RS02745;product=acetylornithine deacetylase;protein_id=WP_001298964.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 113652 114656 . + . ID=gene-AD39_RS02740;Name=argC;gbkey=Gene;gene=argC;gene_biotype=protein_coding;locus_tag=AD39_RS02740;old_locus_tag=AD39_4545 NZ_JJLH01000058.1 Protein Homology CDS 113652 114656 . + 0 ID=cds-WP_000935370.1;Parent=gene-AD39_RS02740;Dbxref=GenBank:WP_000935370.1;Name=WP_000935370.1;Ontology_term=GO:0006526,GO:0006592,GO:0003942,GO:0070401;gbkey=CDS;gene=argC;go_function=N-acetyl-gamma-glutamyl-phosphate reductase activity|0003942||IEA,NADP+ binding|0070401||IEA;go_process=L-arginine biosynthetic process|0006526||IEA,ornithine biosynthetic process|0006592||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122770.1;locus_tag=AD39_RS02740;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=WP_000935370.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 114664 115440 . + . ID=gene-AD39_RS02735;Name=argB;gbkey=Gene;gene=argB;gene_biotype=protein_coding;locus_tag=AD39_RS02735;old_locus_tag=AD39_4546 NZ_JJLH01000058.1 Protein Homology CDS 114664 115440 . + 0 ID=cds-WP_001302318.1;Parent=gene-AD39_RS02735;Dbxref=GenBank:WP_001302318.1;Name=WP_001302318.1;Ontology_term=GO:0006592,GO:0003991,GO:0005737;gbkey=CDS;gene=argB;go_component=cytoplasm|0005737||IEA;go_function=acetylglutamate kinase activity|0003991||IEA;go_process=ornithine biosynthetic process|0006592||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418394.3;locus_tag=AD39_RS02735;product=acetylglutamate kinase;protein_id=WP_001302318.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 115501 116874 . + . ID=gene-AD39_RS02730;Name=argH;gbkey=Gene;gene=argH;gene_biotype=protein_coding;locus_tag=AD39_RS02730;old_locus_tag=AD39_4547 NZ_JJLH01000058.1 Protein Homology CDS 115501 116874 . + 0 ID=cds-WP_001230081.1;Parent=gene-AD39_RS02730;Dbxref=GenBank:WP_001230081.1;Name=WP_001230081.1;Ontology_term=GO:0042450,GO:0004056;gbkey=CDS;gene=argH;go_function=argininosuccinate lyase activity|0004056||IEA;go_process=L-arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709760.1;locus_tag=AD39_RS02730;product=argininosuccinate lyase;protein_id=WP_001230081.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 117373 118587 . + . ID=gene-AD39_RS02725;Name=manD;gbkey=Gene;gene=manD;gene_biotype=protein_coding;locus_tag=AD39_RS02725;old_locus_tag=AD39_4548 NZ_JJLH01000058.1 Protein Homology CDS 117373 118587 . + 0 ID=cds-WP_000690934.1;Parent=gene-AD39_RS02725;Dbxref=GenBank:WP_000690934.1;Name=WP_000690934.1;Ontology_term=GO:0016052,GO:0008927;gbkey=CDS;gene=manD;go_function=mannonate dehydratase activity|0008927||IEA;go_process=carbohydrate catabolic process|0016052||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001625315.1;locus_tag=AD39_RS02725;product=D-mannonate dehydratase ManD;protein_id=WP_000690934.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 118654 119937 . + . ID=gene-AD39_RS02720;Name=AD39_RS02720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS02720;old_locus_tag=AD39_4549 NZ_JJLH01000058.1 Protein Homology CDS 118654 119937 . + 0 ID=cds-WP_032287655.1;Parent=gene-AD39_RS02720;Dbxref=GenBank:WP_032287655.1;Name=WP_032287655.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000382182.1;locus_tag=AD39_RS02720;product=MFS transporter;protein_id=WP_032287655.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 120189 121106 . + . ID=gene-AD39_RS02715;Name=oxyR;gbkey=Gene;gene=oxyR;gene_biotype=protein_coding;locus_tag=AD39_RS02715;old_locus_tag=AD39_4550 NZ_JJLH01000058.1 Protein Homology CDS 120189 121106 . + 0 ID=cds-WP_001025939.1;Parent=gene-AD39_RS02715;Dbxref=GenBank:WP_001025939.1;Name=WP_001025939.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=oxyR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016831323.1;locus_tag=AD39_RS02715;product=DNA-binding transcriptional regulator OxyR;protein_id=WP_001025939.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 121089 122489 . - . ID=gene-AD39_RS02710;Name=sthA;gbkey=Gene;gene=sthA;gene_biotype=protein_coding;locus_tag=AD39_RS02710;old_locus_tag=AD39_4551 NZ_JJLH01000058.1 Protein Homology CDS 121089 122489 . - 0 ID=cds-WP_001120810.1;Parent=gene-AD39_RS02710;Dbxref=GenBank:WP_001120810.1;Name=WP_001120810.1;Ontology_term=GO:0045454,GO:0003957,GO:0050660;gbkey=CDS;gene=sthA;go_function=NAD(P)+ transhydrogenase (Si-specific) activity|0003957||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=cell redox homeostasis|0045454||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418397.2;locus_tag=AD39_RS02710;product=Si-specific NAD(P)(+) transhydrogenase;protein_id=WP_001120810.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 122820 123470 . + . ID=gene-AD39_RS02705;Name=fabR;gbkey=Gene;gene=fabR;gene_biotype=protein_coding;locus_tag=AD39_RS02705;old_locus_tag=AD39_4553 NZ_JJLH01000058.1 Protein Homology CDS 122820 123470 . + 0 ID=cds-WP_139299639.1;Parent=gene-AD39_RS02705;Dbxref=GenBank:WP_139299639.1;Name=WP_139299639.1;Ontology_term=GO:0003677;gbkey=CDS;gene=fabR;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002460670.1;locus_tag=AD39_RS02705;product=HTH-type transcriptional repressor FabR;protein_id=WP_139299639.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 123470 123829 . + . ID=gene-AD39_RS02700;Name=yijD;gbkey=Gene;gene=yijD;gene_biotype=protein_coding;locus_tag=AD39_RS02700;old_locus_tag=AD39_4554 NZ_JJLH01000058.1 Protein Homology CDS 123470 123829 . + 0 ID=cds-WP_000806411.1;Parent=gene-AD39_RS02700;Dbxref=GenBank:WP_000806411.1;Name=WP_000806411.1;gbkey=CDS;gene=yijD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312922.1;locus_tag=AD39_RS02700;product=YijD family membrane protein;protein_id=WP_000806411.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 123869 124969 . - . ID=gene-AD39_RS02695;Name=trmA;gbkey=Gene;gene=trmA;gene_biotype=protein_coding;locus_tag=AD39_RS02695;old_locus_tag=AD39_4555 NZ_JJLH01000058.1 Protein Homology CDS 123869 124969 . - 0 ID=cds-WP_000187025.1;Parent=gene-AD39_RS02695;Dbxref=GenBank:WP_000187025.1;Name=WP_000187025.1;Ontology_term=GO:0006396,GO:0030697;gbkey=CDS;gene=trmA;go_function=tRNA (uracil(54)-C5)-methyltransferase activity%2C S-adenosyl methionine-dependent|0030697||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418400.1;locus_tag=AD39_RS02695;product=tRNA (uridine(54)-C5)-methyltransferase TrmA;protein_id=WP_000187025.1;transl_table=11 NZ_JJLH01000058.1 cmsearch riboswitch 125083 125272 . + . ID=id-NZ_JJLH01000058.1:125083..125272;Dbxref=RFAM:RF00174;Note=cobalamin riboswitch;bound_moiety=adenosylcobalamin;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_JJLH01000058.1 RefSeq gene 125338 127182 . + . ID=gene-AD39_RS02690;Name=btuB;gbkey=Gene;gene=btuB;gene_biotype=protein_coding;locus_tag=AD39_RS02690;old_locus_tag=AD39_4556 NZ_JJLH01000058.1 Protein Homology CDS 125338 127182 . + 0 ID=cds-WP_032283636.1;Parent=gene-AD39_RS02690;Dbxref=GenBank:WP_032283636.1;Name=WP_032283636.1;Ontology_term=GO:0015889,GO:0015420;gbkey=CDS;gene=btuB;go_function=ABC-type vitamin B12 transporter activity|0015420||IEA;go_process=cobalamin transport|0015889||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418401.1;locus_tag=AD39_RS02690;product=TonB-dependent vitamin B12 receptor BtuB;protein_id=WP_032283636.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 127127 127984 . + . ID=gene-AD39_RS02685;Name=murI;gbkey=Gene;gene=murI;gene_biotype=protein_coding;locus_tag=AD39_RS02685;old_locus_tag=AD39_4557 NZ_JJLH01000058.1 Protein Homology CDS 127127 127984 . + 0 ID=cds-WP_000201827.1;Parent=gene-AD39_RS02685;Dbxref=GenBank:WP_000201827.1;Name=WP_000201827.1;Ontology_term=GO:0008152,GO:0008881;gbkey=CDS;gene=murI;go_function=glutamate racemase activity|0008881||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312925.2;locus_tag=AD39_RS02685;product=glutamate racemase;protein_id=WP_000201827.1;transl_table=11 NZ_JJLH01000058.1 RefSeq gene 128358 129346 . + . ID=gene-AD39_RS02680;Name=AD39_RS02680;end_range=129346,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS02680;old_locus_tag=AD39_4559;partial=true NZ_JJLH01000058.1 cmsearch rRNA 128358 129346 . + . ID=rna-AD39_RS02680;Parent=gene-AD39_RS02680;Dbxref=RFAM:RF00177;end_range=129346,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS02680;partial=true;product=16S ribosomal RNA NZ_JJLH01000058.1 cmsearch exon 128358 129346 . + . ID=exon-AD39_RS02680-1;Parent=rna-AD39_RS02680;Dbxref=RFAM:RF00177;end_range=129346,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS02680;partial=true;product=16S ribosomal RNA ##sequence-region NZ_JJLH01000059.1 1 811 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000059.1 RefSeq region 1 811 . + . ID=NZ_JJLH01000059.1:1..811;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000059.1 RefSeq gene 1 480 . + . ID=gene-AD39_RS0125610;Name=AD39_RS0125610;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0125610;partial=true;start_range=.,1 NZ_JJLH01000059.1 cmsearch rRNA 1 480 . + . ID=rna-AD39_RS0125610;Parent=gene-AD39_RS0125610;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125610;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_JJLH01000059.1 cmsearch exon 1 480 . + . ID=exon-AD39_RS0125610-1;Parent=rna-AD39_RS0125610;Dbxref=RFAM:RF00177;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125610;partial=true;product=16S ribosomal RNA;start_range=.,1 NZ_JJLH01000059.1 RefSeq gene 566 641 . + . ID=gene-AD39_RS02675;Name=AD39_RS02675;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS02675;old_locus_tag=AD39_4560 NZ_JJLH01000059.1 tRNAscan-SE tRNA 566 641 . + . ID=rna-AD39_RS02675;Parent=gene-AD39_RS02675;anticodon=(pos:600..602);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS02675;product=tRNA-Glu NZ_JJLH01000059.1 tRNAscan-SE exon 566 641 . + . ID=exon-AD39_RS02675-1;Parent=rna-AD39_RS02675;anticodon=(pos:600..602);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS02675;product=tRNA-Glu ##sequence-region NZ_JJLH01000060.1 1 3323 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000060.1 RefSeq region 1 3323 . + . ID=NZ_JJLH01000060.1:1..3323;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000060.1 RefSeq gene 1 1151 . + . ID=gene-AD39_RS0125615;Name=AD39_RS0125615;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0125615;partial=true;start_range=.,1 NZ_JJLH01000060.1 cmsearch rRNA 1 1151 . + . ID=rna-AD39_RS0125615;Parent=gene-AD39_RS0125615;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125615;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_JJLH01000060.1 cmsearch exon 1 1151 . + . ID=exon-AD39_RS0125615-1;Parent=rna-AD39_RS0125615;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125615;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_JJLH01000060.1 RefSeq gene 1246 1361 . + . ID=gene-AD39_RS02670;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=AD39_RS02670;old_locus_tag=AD39_4561 NZ_JJLH01000060.1 cmsearch rRNA 1246 1361 . + . ID=rna-AD39_RS02670;Parent=gene-AD39_RS02670;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS02670;product=5S ribosomal RNA NZ_JJLH01000060.1 cmsearch exon 1246 1361 . + . ID=exon-AD39_RS02670-1;Parent=rna-AD39_RS02670;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS02670;product=5S ribosomal RNA NZ_JJLH01000060.1 RefSeq gene 1416 1492 . + . ID=gene-AD39_RS02665;Name=AD39_RS02665;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS02665;old_locus_tag=AD39_4562 NZ_JJLH01000060.1 tRNAscan-SE tRNA 1416 1492 . + . ID=rna-AD39_RS02665;Parent=gene-AD39_RS02665;anticodon=(pos:1450..1452);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS02665;product=tRNA-Asp NZ_JJLH01000060.1 tRNAscan-SE exon 1416 1492 . + . ID=exon-AD39_RS02665-1;Parent=rna-AD39_RS02665;anticodon=(pos:1450..1452);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS02665;product=tRNA-Asp NZ_JJLH01000060.1 RefSeq gene 1839 2333 . + . ID=gene-AD39_RS0125620;Name=AD39_RS0125620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125620;old_locus_tag=AD39_4563 NZ_JJLH01000060.1 Protein Homology CDS 1839 2333 . + 0 ID=cds-WP_223413434.1;Parent=gene-AD39_RS0125620;Dbxref=GenBank:WP_223413434.1;Name=WP_223413434.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024750.6;locus_tag=AD39_RS0125620;product=phage integrase central domain-containing protein;protein_id=WP_223413434.1;transl_table=11 NZ_JJLH01000060.1 RefSeq pseudogene 2314 3323 . - . ID=gene-AD39_RS0125625;Name=AD39_RS0125625;end_range=3323,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125625;partial=true;pseudo=true NZ_JJLH01000060.1 Protein Homology CDS 2314 3323 . - 1 ID=cds-AD39_RS0125625;Parent=gene-AD39_RS0125625;Note=frameshifted%3B incomplete%3B missing N-terminus;Ontology_term=GO:0004803;end_range=3323,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611657.1;locus_tag=AD39_RS0125625;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000061.1 1 31136 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000061.1 RefSeq region 1 31136 . + . ID=NZ_JJLH01000061.1:1..31136;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000061.1 RefSeq pseudogene 1 970 . + . ID=gene-AD39_RS29520;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=pseudogene;locus_tag=AD39_RS29520;partial=true;pseudo=true;start_range=.,1 NZ_JJLH01000061.1 Protein Homology CDS 1 970 . + 2 ID=cds-AD39_RS29520;Parent=gene-AD39_RS29520;Note=frameshifted%3B incomplete%3B missing N-terminus;Ontology_term=GO:0006414,GO:0003746,GO:0005525;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312930.1;locus_tag=AD39_RS29520;partial=true;product=elongation factor Tu;pseudo=true;start_range=.,1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 1200 1583 . + . ID=gene-AD39_RS02660;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=AD39_RS02660;old_locus_tag=AD39_4568 NZ_JJLH01000061.1 Protein Homology CDS 1200 1583 . + 0 ID=cds-WP_001275702.1;Parent=gene-AD39_RS02660;Dbxref=GenBank:WP_001275702.1;Name=WP_001275702.1;gbkey=CDS;gene=secE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_007665874.1;locus_tag=AD39_RS02660;product=preprotein translocase subunit SecE;protein_id=WP_001275702.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 1585 2130 . + . ID=gene-AD39_RS02655;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=AD39_RS02655;old_locus_tag=AD39_4569 NZ_JJLH01000061.1 Protein Homology CDS 1585 2130 . + 0 ID=cds-WP_001287516.1;Parent=gene-AD39_RS02655;Dbxref=GenBank:WP_001287516.1;Name=WP_001287516.1;Ontology_term=GO:0032784;gbkey=CDS;gene=nusG;go_process=regulation of DNA-templated transcription elongation|0032784||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005280494.1;locus_tag=AD39_RS02655;product=transcription termination/antitermination protein NusG;protein_id=WP_001287516.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 2289 2717 . + . ID=gene-AD39_RS02650;Name=rplK;gbkey=Gene;gene=rplK;gene_biotype=protein_coding;locus_tag=AD39_RS02650;old_locus_tag=AD39_4570 NZ_JJLH01000061.1 Protein Homology CDS 2289 2717 . + 0 ID=cds-WP_001085926.1;Parent=gene-AD39_RS02650;Dbxref=GenBank:WP_001085926.1;Name=WP_001085926.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplK;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006121495.1;locus_tag=AD39_RS02650;product=50S ribosomal protein L11;protein_id=WP_001085926.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 2721 3425 . + . ID=gene-AD39_RS02645;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;locus_tag=AD39_RS02645;old_locus_tag=AD39_4571 NZ_JJLH01000061.1 Protein Homology CDS 2721 3425 . + 0 ID=cds-WP_001096684.1;Parent=gene-AD39_RS02645;Dbxref=GenBank:WP_001096684.1;Name=WP_001096684.1;Ontology_term=GO:0006412,GO:0003723,GO:0003735,GO:0015934;gbkey=CDS;gene=rplA;go_component=large ribosomal subunit|0015934||IEA;go_function=RNA binding|0003723||IEA,structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312934.1;locus_tag=AD39_RS02645;product=50S ribosomal protein L1;protein_id=WP_001096684.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 3838 4335 . + . ID=gene-AD39_RS02640;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=AD39_RS02640;old_locus_tag=AD39_4572 NZ_JJLH01000061.1 Protein Homology CDS 3838 4335 . + 0 ID=cds-WP_001207201.1;Parent=gene-AD39_RS02640;Dbxref=GenBank:WP_001207201.1;Name=WP_001207201.1;Ontology_term=GO:0006412,GO:0003735,GO:0015934;gbkey=CDS;gene=rplJ;go_component=large ribosomal subunit|0015934||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002438625.1;locus_tag=AD39_RS02640;product=50S ribosomal protein L10;protein_id=WP_001207201.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 4402 4767 . + . ID=gene-AD39_RS02635;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=AD39_RS02635;old_locus_tag=AD39_4573 NZ_JJLH01000061.1 Protein Homology CDS 4402 4767 . + 0 ID=cds-WP_000028878.1;Parent=gene-AD39_RS02635;Dbxref=GenBank:WP_000028878.1;Name=WP_000028878.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplL;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005122872.1;locus_tag=AD39_RS02635;product=50S ribosomal protein L7/L12;protein_id=WP_000028878.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 5087 9115 . + . ID=gene-AD39_RS02630;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=AD39_RS02630;old_locus_tag=AD39_4574 NZ_JJLH01000061.1 Protein Homology CDS 5087 9115 . + 0 ID=cds-WP_000263098.1;Parent=gene-AD39_RS02630;Dbxref=GenBank:WP_000263098.1;Name=WP_000263098.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899;gbkey=CDS;gene=rpoB;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004870488.1;locus_tag=AD39_RS02630;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_000263098.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 9192 13415 . + . ID=gene-AD39_RS02625;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;locus_tag=AD39_RS02625;old_locus_tag=AD39_4575 NZ_JJLH01000061.1 Protein Homology CDS 9192 13415 . + 0 ID=cds-WP_000653944.1;Parent=gene-AD39_RS02625;Dbxref=GenBank:WP_000653944.1;Name=WP_000653944.1;Ontology_term=GO:0006351,GO:0003677,GO:0003899;gbkey=CDS;gene=rpoC;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA;go_process=DNA-templated transcription|0006351||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312938.1;locus_tag=AD39_RS02625;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_000653944.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 13657 14790 . - . ID=gene-AD39_RS02620;Name=thiH;gbkey=Gene;gene=thiH;gene_biotype=protein_coding;locus_tag=AD39_RS02620;old_locus_tag=AD39_4576 NZ_JJLH01000061.1 Protein Homology CDS 13657 14790 . - 0 ID=cds-WP_001402733.1;Parent=gene-AD39_RS02620;Dbxref=GenBank:WP_001402733.1;Name=WP_001402733.1;Ontology_term=GO:0009228,GO:0005506,GO:0016829,GO:0051539,GO:1904047;gbkey=CDS;gene=thiH;go_function=iron ion binding|0005506||IEA,lyase activity|0016829||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418417.1;locus_tag=AD39_RS02620;product=2-iminoacetate synthase ThiH;protein_id=WP_001402733.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 14787 15557 . - . ID=gene-AD39_RS02615;Name=thiG;gbkey=Gene;gene=thiG;gene_biotype=protein_coding;locus_tag=AD39_RS02615;old_locus_tag=AD39_4577 NZ_JJLH01000061.1 Protein Homology CDS 14787 15557 . - 0 ID=cds-WP_000944104.1;Parent=gene-AD39_RS02615;Dbxref=GenBank:WP_000944104.1;Name=WP_000944104.1;gbkey=CDS;gene=thiG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418418.2;locus_tag=AD39_RS02615;product=thiazole synthase;protein_id=WP_000944104.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 15559 15759 . - . ID=gene-AD39_RS02610;Name=thiS;gbkey=Gene;gene=thiS;gene_biotype=protein_coding;locus_tag=AD39_RS02610;old_locus_tag=AD39_4578 NZ_JJLH01000061.1 Protein Homology CDS 15559 15759 . - 0 ID=cds-WP_001166230.1;Parent=gene-AD39_RS02610;Dbxref=GenBank:WP_001166230.1;Name=WP_001166230.1;Ontology_term=GO:0009228,GO:0003824;gbkey=CDS;gene=thiS;go_function=catalytic activity|0003824||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026279.1;locus_tag=AD39_RS02610;product=sulfur carrier protein ThiS;protein_id=WP_001166230.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 15743 16498 . - . ID=gene-AD39_RS02605;Name=thiF;gbkey=Gene;gene=thiF;gene_biotype=protein_coding;locus_tag=AD39_RS02605;old_locus_tag=AD39_4579 NZ_JJLH01000061.1 Protein Homology CDS 15743 16498 . - 0 ID=cds-WP_000999737.1;Parent=gene-AD39_RS02605;Dbxref=GenBank:WP_000999737.1;Name=WP_000999737.1;Ontology_term=GO:0009228,GO:0016779;gbkey=CDS;gene=thiF;go_function=nucleotidyltransferase activity|0016779||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418420.4;locus_tag=AD39_RS02605;product=thiazole biosynthesis adenylyltransferase ThiF;protein_id=WP_000999737.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 16491 17126 . - . ID=gene-AD39_RS02600;Name=thiE;gbkey=Gene;gene=thiE;gene_biotype=protein_coding;locus_tag=AD39_RS02600;old_locus_tag=AD39_4580 NZ_JJLH01000061.1 Protein Homology CDS 16491 17126 . - 0 ID=cds-WP_000284600.1;Parent=gene-AD39_RS02600;Dbxref=GenBank:WP_000284600.1;Name=WP_000284600.1;Ontology_term=GO:0009228,GO:0004789;gbkey=CDS;gene=thiE;go_function=thiamine-phosphate diphosphorylase activity|0004789||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709787.2;locus_tag=AD39_RS02600;product=thiamine phosphate synthase;protein_id=WP_000284600.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 17126 19021 . - . ID=gene-AD39_RS02595;Name=thiC;gbkey=Gene;gene=thiC;gene_biotype=protein_coding;locus_tag=AD39_RS02595;old_locus_tag=AD39_4581 NZ_JJLH01000061.1 Protein Homology CDS 17126 19021 . - 0 ID=cds-WP_032257735.1;Parent=gene-AD39_RS02595;Dbxref=GenBank:WP_032257735.1;Name=WP_032257735.1;Ontology_term=GO:0009228,GO:0051536;gbkey=CDS;gene=thiC;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=thiamine biosynthetic process|0009228||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418422.1;locus_tag=AD39_RS02595;product=phosphomethylpyrimidine synthase ThiC;protein_id=WP_032257735.1;transl_table=11 NZ_JJLH01000061.1 cmsearch riboswitch 19102 19202 . - . ID=id-NZ_JJLH01000061.1:19102..19202;Dbxref=RFAM:RF00059;Note=TPP riboswitch;bound_moiety=thiamine pyrophosphate;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_JJLH01000061.1 RefSeq gene 19254 19730 . - . ID=gene-AD39_RS02590;Name=rsd;gbkey=Gene;gene=rsd;gene_biotype=protein_coding;locus_tag=AD39_RS02590;old_locus_tag=AD39_4582 NZ_JJLH01000061.1 Protein Homology CDS 19254 19730 . - 0 ID=cds-WP_000934302.1;Parent=gene-AD39_RS02590;Dbxref=GenBank:WP_000934302.1;Name=WP_000934302.1;Ontology_term=GO:0006355;gbkey=CDS;gene=rsd;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312945.1;locus_tag=AD39_RS02590;product=sigma D regulator;protein_id=WP_000934302.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 19825 20598 . + . ID=gene-AD39_RS02585;Name=nudC;gbkey=Gene;gene=nudC;gene_biotype=protein_coding;locus_tag=AD39_RS02585;old_locus_tag=AD39_4583 NZ_JJLH01000061.1 Protein Homology CDS 19825 20598 . + 0 ID=cds-WP_000373940.1;Parent=gene-AD39_RS02585;Dbxref=GenBank:WP_000373940.1;Name=WP_000373940.1;Ontology_term=GO:0000210,GO:0016787;gbkey=CDS;gene=nudC;go_function=NAD+ diphosphatase activity|0000210||IEA,hydrolase activity|0016787||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026280.1;locus_tag=AD39_RS02585;product=NAD(+) diphosphatase;protein_id=WP_000373940.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 20638 21702 . + . ID=gene-AD39_RS02580;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=AD39_RS02580;old_locus_tag=AD39_4584 NZ_JJLH01000061.1 Protein Homology CDS 20638 21702 . + 0 ID=cds-WP_001402734.1;Parent=gene-AD39_RS02580;Dbxref=GenBank:WP_001402734.1;Name=WP_001402734.1;Ontology_term=GO:0006779,GO:0004853;gbkey=CDS;gene=hemE;go_function=uroporphyrinogen decarboxylase activity|0004853||IEA;go_process=porphyrin-containing compound biosynthetic process|0006779||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418425.1;locus_tag=AD39_RS02580;product=uroporphyrinogen decarboxylase;protein_id=WP_001402734.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 21859 22530 . + . ID=gene-AD39_RS02575;Name=nfi;gbkey=Gene;gene=nfi;gene_biotype=protein_coding;locus_tag=AD39_RS02575;old_locus_tag=AD39_4585 NZ_JJLH01000061.1 Protein Homology CDS 21859 22530 . + 0 ID=cds-WP_032283641.1;Parent=gene-AD39_RS02575;Dbxref=GenBank:WP_032283641.1;Name=WP_032283641.1;Note=cleaves DNA at apurinic or apyrimidinic sites;Ontology_term=GO:0006281,GO:0004519;gbkey=CDS;gene=nfi;go_function=endonuclease activity|0004519||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312948.1;locus_tag=AD39_RS02575;product=deoxyribonuclease V;protein_id=WP_032283641.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 22573 23163 . + . ID=gene-AD39_RS02570;Name=yjaG;gbkey=Gene;gene=yjaG;gene_biotype=protein_coding;locus_tag=AD39_RS02570;old_locus_tag=AD39_4586 NZ_JJLH01000061.1 Protein Homology CDS 22573 23163 . + 0 ID=cds-WP_000940106.1;Parent=gene-AD39_RS02570;Dbxref=GenBank:WP_000940106.1;Name=WP_000940106.1;gbkey=CDS;gene=yjaG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418427.1;locus_tag=AD39_RS02570;product=YjaG family protein;protein_id=WP_000940106.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 23350 23622 . + . ID=gene-AD39_RS02565;Name=hupA;gbkey=Gene;gene=hupA;gene_biotype=protein_coding;locus_tag=AD39_RS02565;old_locus_tag=AD39_4587 NZ_JJLH01000061.1 Protein Homology CDS 23350 23622 . + 0 ID=cds-WP_001044513.1;Parent=gene-AD39_RS02565;Dbxref=GenBank:WP_001044513.1;Name=WP_001044513.1;gbkey=CDS;gene=hupA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017460010.1;locus_tag=AD39_RS02565;product=nucleoid-associated protein HU-alpha;protein_id=WP_001044513.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 23635 24330 . + . ID=gene-AD39_RS02560;Name=yjaH;gbkey=Gene;gene=yjaH;gene_biotype=protein_coding;locus_tag=AD39_RS02560;old_locus_tag=AD39_4588 NZ_JJLH01000061.1 Protein Homology CDS 23635 24330 . + 0 ID=cds-WP_001300651.1;Parent=gene-AD39_RS02560;Dbxref=GenBank:WP_001300651.1;Name=WP_001300651.1;gbkey=CDS;gene=yjaH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709795.2;locus_tag=AD39_RS02560;product=DUF1481 domain-containing protein;protein_id=WP_001300651.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 24332 24757 . - . ID=gene-AD39_RS02555;Name=zraP;gbkey=Gene;gene=zraP;gene_biotype=protein_coding;locus_tag=AD39_RS02555;old_locus_tag=AD39_4589 NZ_JJLH01000061.1 Protein Homology CDS 24332 24757 . - 0 ID=cds-WP_001299292.1;Parent=gene-AD39_RS02555;Dbxref=GenBank:WP_001299292.1;Name=WP_001299292.1;gbkey=CDS;gene=zraP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312952.2;locus_tag=AD39_RS02555;product=zinc resistance sensor/chaperone ZraP;protein_id=WP_001299292.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 24995 26371 . + . ID=gene-AD39_RS02550;Name=zraS;gbkey=Gene;gene=zraS;gene_biotype=protein_coding;locus_tag=AD39_RS02550;old_locus_tag=AD39_4591 NZ_JJLH01000061.1 Protein Homology CDS 24995 26371 . + 0 ID=cds-WP_001402735.1;Parent=gene-AD39_RS02550;Dbxref=GenBank:WP_001402735.1;Name=WP_001402735.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155;gbkey=CDS;gene=zraS;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709797.1;locus_tag=AD39_RS02550;product=two-component system sensor histidine kinase ZraS;protein_id=WP_001402735.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 26368 27693 . + . ID=gene-AD39_RS02545;Name=zraR;gbkey=Gene;gene=zraR;gene_biotype=protein_coding;locus_tag=AD39_RS02545;old_locus_tag=AD39_4592 NZ_JJLH01000061.1 Protein Homology CDS 26368 27693 . + 0 ID=cds-WP_001542576.1;Parent=gene-AD39_RS02545;Dbxref=GenBank:WP_001542576.1;Name=WP_001542576.1;Ontology_term=GO:0000160,GO:0006355,GO:0043565;gbkey=CDS;gene=zraR;go_function=sequence-specific DNA binding|0043565||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418432.1;locus_tag=AD39_RS02545;product=sigma-54-dependent response regulator transcription factor ZraR;protein_id=WP_001542576.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 27690 28979 . - . ID=gene-AD39_RS02540;Name=purD;gbkey=Gene;gene=purD;gene_biotype=protein_coding;locus_tag=AD39_RS02540;old_locus_tag=AD39_4593 NZ_JJLH01000061.1 Protein Homology CDS 27690 28979 . - 0 ID=cds-WP_000866811.1;Parent=gene-AD39_RS02540;Dbxref=GenBank:WP_000866811.1;Name=WP_000866811.1;Ontology_term=GO:0009113,GO:0004637;gbkey=CDS;gene=purD;go_function=phosphoribosylamine-glycine ligase activity|0004637||IEA;go_process=purine nucleobase biosynthetic process|0009113||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418433.1;locus_tag=AD39_RS02540;product=phosphoribosylamine--glycine ligase;protein_id=WP_000866811.1;transl_table=11 NZ_JJLH01000061.1 RefSeq gene 28991 30580 . - . ID=gene-AD39_RS02535;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=AD39_RS02535;old_locus_tag=AD39_4594 NZ_JJLH01000061.1 Protein Homology CDS 28991 30580 . - 0 ID=cds-WP_001187566.1;Parent=gene-AD39_RS02535;Dbxref=GenBank:WP_001187566.1;Name=WP_001187566.1;Ontology_term=GO:0009152,GO:0003937,GO:0004643;gbkey=CDS;gene=purH;go_function=IMP cyclohydrolase activity|0003937||IEA,phosphoribosylaminoimidazolecarboxamide formyltransferase activity|0004643||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132841.1;locus_tag=AD39_RS02535;product=bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase;protein_id=WP_001187566.1;transl_table=11 ##sequence-region NZ_JJLH01000062.1 1 1207 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000062.1 RefSeq region 1 1207 . + . ID=NZ_JJLH01000062.1:1..1207;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000062.1 RefSeq gene 219 1207 . + . ID=gene-AD39_RS02530;Name=AD39_RS02530;end_range=1207,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS02530;old_locus_tag=AD39_4597;partial=true NZ_JJLH01000062.1 cmsearch rRNA 219 1207 . + . ID=rna-AD39_RS02530;Parent=gene-AD39_RS02530;Dbxref=RFAM:RF00177;end_range=1207,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS02530;partial=true;product=16S ribosomal RNA NZ_JJLH01000062.1 cmsearch exon 219 1207 . + . ID=exon-AD39_RS02530-1;Parent=rna-AD39_RS02530;Dbxref=RFAM:RF00177;end_range=1207,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS02530;partial=true;product=16S ribosomal RNA ##sequence-region NZ_JJLH01000063.1 1 6641 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000063.1 RefSeq region 1 6641 . + . ID=NZ_JJLH01000063.1:1..6641;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000063.1 RefSeq gene 1 1151 . + . ID=gene-AD39_RS0125640;Name=AD39_RS0125640;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS0125640;partial=true;start_range=.,1 NZ_JJLH01000063.1 cmsearch rRNA 1 1151 . + . ID=rna-AD39_RS0125640;Parent=gene-AD39_RS0125640;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125640;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_JJLH01000063.1 cmsearch exon 1 1151 . + . ID=exon-AD39_RS0125640-1;Parent=rna-AD39_RS0125640;Dbxref=RFAM:RF02541;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS0125640;partial=true;product=23S ribosomal RNA;start_range=.,1 NZ_JJLH01000063.1 RefSeq gene 1246 1361 . + . ID=gene-AD39_RS02525;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=AD39_RS02525;old_locus_tag=AD39_4598 NZ_JJLH01000063.1 cmsearch rRNA 1246 1361 . + . ID=rna-AD39_RS02525;Parent=gene-AD39_RS02525;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS02525;product=5S ribosomal RNA NZ_JJLH01000063.1 cmsearch exon 1246 1361 . + . ID=exon-AD39_RS02525-1;Parent=rna-AD39_RS02525;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS02525;product=5S ribosomal RNA NZ_JJLH01000063.1 RefSeq gene 1664 2692 . + . ID=gene-AD39_RS02520;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=AD39_RS02520;old_locus_tag=AD39_4599 NZ_JJLH01000063.1 Protein Homology CDS 1664 2692 . + 0 ID=cds-WP_001016693.1;Parent=gene-AD39_RS02520;Dbxref=GenBank:WP_001016693.1;Name=WP_001016693.1;Ontology_term=GO:0008762,GO:0071949;gbkey=CDS;gene=murB;go_function=UDP-N-acetylmuramate dehydrogenase activity|0008762||IEA,FAD binding|0071949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709772.1;locus_tag=AD39_RS02520;product=UDP-N-acetylmuramate dehydrogenase;protein_id=WP_001016693.1;transl_table=11 NZ_JJLH01000063.1 RefSeq gene 2689 3654 . + . ID=gene-AD39_RS02515;Name=birA;gbkey=Gene;gene=birA;gene_biotype=protein_coding;locus_tag=AD39_RS02515;old_locus_tag=AD39_4600 NZ_JJLH01000063.1 Protein Homology CDS 2689 3654 . + 0 ID=cds-WP_000654593.1;Parent=gene-AD39_RS02515;Dbxref=GenBank:WP_000654593.1;Name=WP_000654593.1;Ontology_term=GO:0036211,GO:0004077;gbkey=CDS;gene=birA;go_function=biotin--[biotin carboxyl-carrier protein] ligase activity|0004077||IEA;go_process=protein modification process|0036211||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312927.1;locus_tag=AD39_RS02515;product=bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA;protein_id=WP_000654593.1;transl_table=11 NZ_JJLH01000063.1 RefSeq gene 3683 4633 . - . ID=gene-AD39_RS02510;Name=coaA;gbkey=Gene;gene=coaA;gene_biotype=protein_coding;locus_tag=AD39_RS02510;old_locus_tag=AD39_4601 NZ_JJLH01000063.1 Protein Homology CDS 3683 4633 . - 0 ID=cds-WP_000023081.1;Parent=gene-AD39_RS02510;Dbxref=GenBank:WP_000023081.1;Name=WP_000023081.1;Ontology_term=GO:0015937,GO:0004594;gbkey=CDS;gene=coaA;go_function=pantothenate kinase activity|0004594||IEA;go_process=coenzyme A biosynthetic process|0015937||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418405.1;locus_tag=AD39_RS02510;product=type I pantothenate kinase;protein_id=WP_000023081.1;transl_table=11 NZ_JJLH01000063.1 RefSeq gene 4995 5070 . + . ID=gene-AD39_RS02505;Name=AD39_RS02505;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS02505;old_locus_tag=AD39_4603 NZ_JJLH01000063.1 tRNAscan-SE tRNA 4995 5070 . + . ID=rna-AD39_RS02505;Parent=gene-AD39_RS02505;anticodon=(pos:5028..5030);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS02505;product=tRNA-Thr NZ_JJLH01000063.1 tRNAscan-SE exon 4995 5070 . + . ID=exon-AD39_RS02505-1;Parent=rna-AD39_RS02505;anticodon=(pos:5028..5030);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS02505;product=tRNA-Thr NZ_JJLH01000063.1 RefSeq gene 5079 5163 . + . ID=gene-AD39_RS02500;Name=AD39_RS02500;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS02500;old_locus_tag=AD39_4604 NZ_JJLH01000063.1 tRNAscan-SE tRNA 5079 5163 . + . ID=rna-AD39_RS02500;Parent=gene-AD39_RS02500;anticodon=(pos:5113..5115);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS02500;product=tRNA-Tyr NZ_JJLH01000063.1 tRNAscan-SE exon 5079 5163 . + . ID=exon-AD39_RS02500-1;Parent=rna-AD39_RS02500;anticodon=(pos:5113..5115);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS02500;product=tRNA-Tyr NZ_JJLH01000063.1 RefSeq gene 5280 5354 . + . ID=gene-AD39_RS02495;Name=AD39_RS02495;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS02495;old_locus_tag=AD39_4605 NZ_JJLH01000063.1 tRNAscan-SE tRNA 5280 5354 . + . ID=rna-AD39_RS02495;Parent=gene-AD39_RS02495;anticodon=(pos:5313..5315);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS02495;product=tRNA-Gly NZ_JJLH01000063.1 tRNAscan-SE exon 5280 5354 . + . ID=exon-AD39_RS02495-1;Parent=rna-AD39_RS02495;anticodon=(pos:5313..5315);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS02495;product=tRNA-Gly NZ_JJLH01000063.1 RefSeq gene 5361 5436 . + . ID=gene-AD39_RS02490;Name=AD39_RS02490;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS02490;old_locus_tag=AD39_4606 NZ_JJLH01000063.1 tRNAscan-SE tRNA 5361 5436 . + . ID=rna-AD39_RS02490;Parent=gene-AD39_RS02490;anticodon=(pos:5394..5396);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS02490;product=tRNA-Thr NZ_JJLH01000063.1 tRNAscan-SE exon 5361 5436 . + . ID=exon-AD39_RS02490-1;Parent=rna-AD39_RS02490;anticodon=(pos:5394..5396);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS02490;product=tRNA-Thr NZ_JJLH01000063.1 RefSeq gene 5551 6641 . + . ID=gene-AD39_RS02485;Name=tuf;end_range=6641,.;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=AD39_RS02485;old_locus_tag=AD39_4607;partial=true NZ_JJLH01000063.1 Protein Homology CDS 5551 6641 . + 0 ID=cds-WP_001428266.1;Parent=gene-AD39_RS02485;Dbxref=GenBank:WP_001428266.1;Name=WP_001428266.1;Ontology_term=GO:0006414,GO:0003746,GO:0005525;end_range=6641,.;gbkey=CDS;gene=tuf;go_function=translation elongation factor activity|0003746||IEA,GTP binding|0005525||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312217.1;locus_tag=AD39_RS02485;partial=true;product=elongation factor Tu;protein_id=WP_001428266.1;transl_table=11 ##sequence-region NZ_JJLH01000064.1 1 155457 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000064.1 RefSeq region 1 155457 . + . ID=NZ_JJLH01000064.1:1..155457;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000064.1 RefSeq gene 74 517 . - . ID=gene-AD39_RS02480;Name=yjaB;gbkey=Gene;gene=yjaB;gene_biotype=protein_coding;locus_tag=AD39_RS02480;old_locus_tag=AD39_4608 NZ_JJLH01000064.1 Protein Homology CDS 74 517 . - 0 ID=cds-WP_000236960.1;Parent=gene-AD39_RS02480;Dbxref=GenBank:WP_000236960.1;Name=WP_000236960.1;Ontology_term=GO:0008080;gbkey=CDS;gene=yjaB;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312957.1;locus_tag=AD39_RS02480;product=acetyltransferase;protein_id=WP_000236960.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 674 1603 . + . ID=gene-AD39_RS02475;Name=metA;gbkey=Gene;gene=metA;gene_biotype=protein_coding;locus_tag=AD39_RS02475;old_locus_tag=AD39_4609 NZ_JJLH01000064.1 Protein Homology CDS 674 1603 . + 0 ID=cds-WP_001122789.1;Parent=gene-AD39_RS02475;Dbxref=GenBank:WP_001122789.1;Name=WP_001122789.1;Ontology_term=GO:0019281,GO:0008899,GO:0005737;gbkey=CDS;gene=metA;go_component=cytoplasm|0005737||IEA;go_function=homoserine O-succinyltransferase activity|0008899||IEA;go_process=L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine|0019281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132837.1;locus_tag=AD39_RS02475;product=homoserine O-acetyltransferase MetA;protein_id=WP_001122789.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 1872 3473 . + . ID=gene-AD39_RS02470;Name=aceB;gbkey=Gene;gene=aceB;gene_biotype=protein_coding;locus_tag=AD39_RS02470;old_locus_tag=AD39_4610 NZ_JJLH01000064.1 Protein Homology CDS 1872 3473 . + 0 ID=cds-WP_000138878.1;Parent=gene-AD39_RS02470;Dbxref=GenBank:WP_000138878.1;Name=WP_000138878.1;Ontology_term=GO:0006097,GO:0004474;gbkey=CDS;gene=aceB;go_function=malate synthase activity|0004474||IEA;go_process=glyoxylate cycle|0006097||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312959.1;locus_tag=AD39_RS02470;product=malate synthase A;protein_id=WP_000138878.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 3503 4807 . + . ID=gene-AD39_RS02465;Name=aceA;gbkey=Gene;gene=aceA;gene_biotype=protein_coding;locus_tag=AD39_RS02465;old_locus_tag=AD39_4611 NZ_JJLH01000064.1 Protein Homology CDS 3503 4807 . + 0 ID=cds-WP_000857856.1;Parent=gene-AD39_RS02465;Dbxref=GenBank:WP_000857856.1;Name=WP_000857856.1;Ontology_term=GO:0019752,GO:0004451;gbkey=CDS;gene=aceA;go_function=isocitrate lyase activity|0004451||IEA;go_process=carboxylic acid metabolic process|0019752||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418439.1;locus_tag=AD39_RS02465;product=isocitrate lyase;protein_id=WP_000857856.1;transl_table=11 NZ_JJLH01000064.1 RefSeq pseudogene 5088 6823 . + . ID=gene-AD39_RS02460;Name=aceK;gbkey=Gene;gene=aceK;gene_biotype=pseudogene;locus_tag=AD39_RS02460;old_locus_tag=AD39_4612;pseudo=true NZ_JJLH01000064.1 Protein Homology CDS 5088 6823 . + 0 ID=cds-AD39_RS02460;Parent=gene-AD39_RS02460;Note=frameshifted;Ontology_term=GO:0006006,GO:0008772,GO:0016791;gbkey=CDS;gene=aceK;go_function=[isocitrate dehydrogenase (NADP+)] kinase activity|0008772||IEA,phosphatase activity|0016791||IEA;go_process=glucose metabolic process|0006006||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418440.1;locus_tag=AD39_RS02460;product=bifunctional isocitrate dehydrogenase kinase/phosphatase;pseudo=true;transl_table=11 NZ_JJLH01000064.1 RefSeq pseudogene 6792 8323 . - . ID=gene-AD39_RS0125650;Name=AD39_RS0125650;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125650;pseudo=true NZ_JJLH01000064.1 Protein Homology CDS 6792 8323 . - 0 ID=cds-AD39_RS0125650;Parent=gene-AD39_RS0125650;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418441.1;locus_tag=AD39_RS0125650;product=ShET2/EspL2 family type III secretion system effector toxin;pseudo=true;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 8640 9464 . - . ID=gene-AD39_RS02455;Name=iclR;gbkey=Gene;gene=iclR;gene_biotype=protein_coding;locus_tag=AD39_RS02455;old_locus_tag=AD39_4615 NZ_JJLH01000064.1 Protein Homology CDS 8640 9464 . - 0 ID=cds-WP_000226403.1;Parent=gene-AD39_RS02455;Dbxref=GenBank:WP_000226403.1;Name=WP_000226403.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=iclR;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418442.2;locus_tag=AD39_RS02455;product=glyoxylate bypass operon transcriptional repressor IclR;protein_id=WP_000226403.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 9664 13347 . + . ID=gene-AD39_RS02450;Name=metH;gbkey=Gene;gene=metH;gene_biotype=protein_coding;locus_tag=AD39_RS02450;old_locus_tag=AD39_4616 NZ_JJLH01000064.1 Protein Homology CDS 9664 13347 . + 0 ID=cds-WP_032283643.1;Parent=gene-AD39_RS02450;Dbxref=GenBank:WP_032283643.1;Name=WP_032283643.1;Ontology_term=GO:0009086,GO:0008270,GO:0008705,GO:0031419;gbkey=CDS;gene=metH;go_function=zinc ion binding|0008270||IEA,methionine synthase activity|0008705||IEA,cobalamin binding|0031419||IEA;go_process=methionine biosynthetic process|0009086||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418443.1;locus_tag=AD39_RS02450;product=methionine synthase;protein_id=WP_032283643.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 13567 15198 . + . ID=gene-AD39_RS02445;Name=yjbB;gbkey=Gene;gene=yjbB;gene_biotype=protein_coding;locus_tag=AD39_RS02445;old_locus_tag=AD39_4617 NZ_JJLH01000064.1 Protein Homology CDS 13567 15198 . + 0 ID=cds-WP_000956830.1;Parent=gene-AD39_RS02445;Dbxref=GenBank:WP_000956830.1;Name=WP_000956830.1;Ontology_term=GO:0044341,GO:0005436,GO:0005886;gbkey=CDS;gene=yjbB;go_component=plasma membrane|0005886||IEA;go_function=sodium:phosphate symporter activity|0005436||IEA;go_process=sodium-dependent phosphate transport|0044341||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418444.1;locus_tag=AD39_RS02445;product=Na/Pi cotransporter family protein;protein_id=WP_000956830.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 15289 15978 . - . ID=gene-AD39_RS02440;Name=pepE;gbkey=Gene;gene=pepE;gene_biotype=protein_coding;locus_tag=AD39_RS02440;old_locus_tag=AD39_4618 NZ_JJLH01000064.1 Protein Homology CDS 15289 15978 . - 0 ID=cds-WP_000421763.1;Parent=gene-AD39_RS02440;Dbxref=GenBank:WP_000421763.1;Name=WP_000421763.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;gene=pepE;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312966.1;locus_tag=AD39_RS02440;product=dipeptidase PepE;protein_id=WP_000421763.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 16190 17062 . + . ID=gene-AD39_RS02435;Name=rluF;gbkey=Gene;gene=rluF;gene_biotype=protein_coding;locus_tag=AD39_RS02435;old_locus_tag=AD39_4620 NZ_JJLH01000064.1 Protein Homology CDS 16190 17062 . + 0 ID=cds-WP_000936370.1;Parent=gene-AD39_RS02435;Dbxref=GenBank:WP_000936370.1;Name=WP_000936370.1;Ontology_term=GO:0001522,GO:0003723,GO:0009982;gbkey=CDS;gene=rluF;go_function=RNA binding|0003723||IEA,pseudouridine synthase activity|0009982||IEA;go_process=pseudouridine synthesis|0001522||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313032.1;locus_tag=AD39_RS02435;product=23S rRNA pseudouridine(2604) synthase RluF;protein_id=WP_000936370.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 17063 17335 . - . ID=gene-AD39_RS02430;Name=yjbD;gbkey=Gene;gene=yjbD;gene_biotype=protein_coding;locus_tag=AD39_RS02430;old_locus_tag=AD39_4621 NZ_JJLH01000064.1 Protein Homology CDS 17063 17335 . - 0 ID=cds-WP_001207638.1;Parent=gene-AD39_RS02430;Dbxref=GenBank:WP_001207638.1;Name=WP_001207638.1;gbkey=CDS;gene=yjbD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313033.1;locus_tag=AD39_RS02430;product=DUF3811 domain-containing protein;protein_id=WP_001207638.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 17865 18992 . + . ID=gene-AD39_RS02425;Name=AD39_RS02425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS02425;old_locus_tag=AD39_4623 NZ_JJLH01000064.1 Protein Homology CDS 17865 18992 . + 0 ID=cds-WP_001533930.1;Parent=gene-AD39_RS02425;Dbxref=GenBank:WP_001533930.1;Name=WP_001533930.1;Ontology_term=GO:0016020;gbkey=CDS;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000592028.1;locus_tag=AD39_RS02425;product=slipin family protein;protein_id=WP_001533930.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 18998 19789 . + . ID=gene-AD39_RS02420;Name=AD39_RS02420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS02420;old_locus_tag=AD39_4624 NZ_JJLH01000064.1 Protein Homology CDS 18998 19789 . + 0 ID=cds-WP_001130548.1;Parent=gene-AD39_RS02420;Dbxref=GenBank:WP_001130548.1;Name=WP_001130548.1;Ontology_term=GO:0000166,GO:0016779,GO:0046872;gbkey=CDS;go_function=nucleotide binding|0000166||IEA,nucleotidyltransferase activity|0016779||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001130549.1;locus_tag=AD39_RS02420;product=nucleotidyltransferase domain-containing protein;protein_id=WP_001130548.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 19825 20751 . - . ID=gene-AD39_RS02415;Name=AD39_RS02415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS02415;old_locus_tag=AD39_4625 NZ_JJLH01000064.1 Protein Homology CDS 19825 20751 . - 0 ID=cds-WP_000212693.1;Parent=gene-AD39_RS02415;Dbxref=GenBank:WP_000212693.1;Name=WP_000212693.1;Ontology_term=GO:0005524,GO:0016301;gbkey=CDS;go_function=ATP binding|0005524||IEA,kinase activity|0016301||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001666873.1;locus_tag=AD39_RS02415;product=zeta toxin family protein;protein_id=WP_000212693.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 20896 22245 . - . ID=gene-AD39_RS02410;Name=lysC;gbkey=Gene;gene=lysC;gene_biotype=protein_coding;locus_tag=AD39_RS02410;old_locus_tag=AD39_4626 NZ_JJLH01000064.1 Protein Homology CDS 20896 22245 . - 0 ID=cds-WP_001290316.1;Parent=gene-AD39_RS02410;Dbxref=GenBank:WP_001290316.1;Name=WP_001290316.1;Ontology_term=GO:0009089,GO:0004072;gbkey=CDS;gene=lysC;go_function=aspartate kinase activity|0004072||IEA;go_process=lysine biosynthetic process via diaminopimelate|0009089||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313034.1;locus_tag=AD39_RS02410;product=lysine-sensitive aspartokinase 3;protein_id=WP_001290316.1;transl_table=11 NZ_JJLH01000064.1 cmsearch riboswitch 22337 22533 . - . ID=id-NZ_JJLH01000064.1:22337..22533;Dbxref=RFAM:RF00168;Note=Lysine riboswitch is most abundant in Firmicutes and Gammaproteobacteria where they are found upstream of a number of genes involved in lysine biosynthesis%2C transport and catabolism;bound_moiety=lysine;gbkey=regulatory;inference=COORDINATES: profile:INFERNAL:1.1.5;regulatory_class=riboswitch NZ_JJLH01000064.1 RefSeq gene 22770 24419 . + . ID=gene-AD39_RS02405;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=AD39_RS02405;old_locus_tag=AD39_4627 NZ_JJLH01000064.1 Protein Homology CDS 22770 24419 . + 0 ID=cds-WP_000790009.1;Parent=gene-AD39_RS02405;Dbxref=GenBank:WP_000790009.1;Name=WP_000790009.1;Ontology_term=GO:0006094,GO:0006096,GO:0004347;gbkey=CDS;gene=pgi;go_function=glucose-6-phosphate isomerase activity|0004347||IEA;go_process=gluconeogenesis|0006094||IEA,glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313035.1;locus_tag=AD39_RS02405;product=glucose-6-phosphate isomerase;protein_id=WP_000790009.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 24774 25016 . + . ID=gene-AD39_RS02400;Name=yjbE;gbkey=Gene;gene=yjbE;gene_biotype=protein_coding;locus_tag=AD39_RS02400;old_locus_tag=AD39_4628 NZ_JJLH01000064.1 Protein Homology CDS 24774 25016 . + 0 ID=cds-WP_032187760.1;Parent=gene-AD39_RS02400;Dbxref=GenBank:WP_032187760.1;Name=WP_032187760.1;gbkey=CDS;gene=yjbE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313036.1;locus_tag=AD39_RS02400;product=exopolysaccharide production protein YjbE;protein_id=WP_032187760.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 25130 25768 . + . ID=gene-AD39_RS02395;Name=yjbF;gbkey=Gene;gene=yjbF;gene_biotype=protein_coding;locus_tag=AD39_RS02395;old_locus_tag=AD39_4629 NZ_JJLH01000064.1 Protein Homology CDS 25130 25768 . + 0 ID=cds-WP_001296632.1;Parent=gene-AD39_RS02395;Dbxref=GenBank:WP_001296632.1;Name=WP_001296632.1;gbkey=CDS;gene=yjbF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418451.4;locus_tag=AD39_RS02395;product=YjbF family lipoprotein;protein_id=WP_001296632.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 25765 26502 . + . ID=gene-AD39_RS02390;Name=yjbG;gbkey=Gene;gene=yjbG;gene_biotype=protein_coding;locus_tag=AD39_RS02390;old_locus_tag=AD39_4630 NZ_JJLH01000064.1 Protein Homology CDS 25765 26502 . + 0 ID=cds-WP_000595535.1;Parent=gene-AD39_RS02390;Dbxref=GenBank:WP_000595535.1;Name=WP_000595535.1;gbkey=CDS;gene=yjbG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418452.1;locus_tag=AD39_RS02390;product=capsule biosynthesis GfcC family protein;protein_id=WP_000595535.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 26502 28598 . + . ID=gene-AD39_RS02385;Name=yjbH;gbkey=Gene;gene=yjbH;gene_biotype=protein_coding;locus_tag=AD39_RS02385;old_locus_tag=AD39_4631 NZ_JJLH01000064.1 Protein Homology CDS 26502 28598 . + 0 ID=cds-WP_000745771.1;Parent=gene-AD39_RS02385;Dbxref=GenBank:WP_000745771.1;Name=WP_000745771.1;gbkey=CDS;gene=yjbH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418453.1;locus_tag=AD39_RS02385;product=YjbH domain-containing protein;protein_id=WP_000745771.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 28645 28923 . - . ID=gene-AD39_RS28765;Name=AD39_RS28765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28765 NZ_JJLH01000064.1 Protein Homology CDS 28645 28923 . - 0 ID=cds-WP_001295279.1;Parent=gene-AD39_RS28765;Dbxref=GenBank:WP_001295279.1;Name=WP_001295279.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165332.1;locus_tag=AD39_RS28765;product=periplasmic protein;protein_id=WP_001295279.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 29138 29548 . + . ID=gene-AD39_RS02375;Name=psiE;gbkey=Gene;gene=psiE;gene_biotype=protein_coding;locus_tag=AD39_RS02375;old_locus_tag=AD39_4634 NZ_JJLH01000064.1 Protein Homology CDS 29138 29548 . + 0 ID=cds-WP_000202902.1;Parent=gene-AD39_RS02375;Dbxref=GenBank:WP_000202902.1;Name=WP_000202902.1;gbkey=CDS;gene=psiE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418454.1;locus_tag=AD39_RS02375;product=phosphate-starvation-inducible protein PsiE;protein_id=WP_000202902.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 29592 31067 . - . ID=gene-AD39_RS02370;Name=xylE;gbkey=Gene;gene=xylE;gene_biotype=protein_coding;locus_tag=AD39_RS02370;old_locus_tag=AD39_4635 NZ_JJLH01000064.1 Protein Homology CDS 29592 31067 . - 0 ID=cds-WP_001097267.1;Parent=gene-AD39_RS02370;Dbxref=GenBank:WP_001097267.1;Name=WP_001097267.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=xylE;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313041.1;locus_tag=AD39_RS02370;product=D-xylose transporter XylE;protein_id=WP_001097267.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 31439 32329 . - . ID=gene-AD39_RS02365;Name=malG;gbkey=Gene;gene=malG;gene_biotype=protein_coding;locus_tag=AD39_RS02365;old_locus_tag=AD39_4636 NZ_JJLH01000064.1 Protein Homology CDS 31439 32329 . - 0 ID=cds-WP_001252058.1;Parent=gene-AD39_RS02365;Dbxref=GenBank:WP_001252058.1;Name=WP_001252058.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=malG;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001252048.1;locus_tag=AD39_RS02365;product=maltose ABC transporter permease MalG;protein_id=WP_001252058.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 32344 33888 . - . ID=gene-AD39_RS02360;Name=malF;gbkey=Gene;gene=malF;gene_biotype=protein_coding;locus_tag=AD39_RS02360;old_locus_tag=AD39_4637 NZ_JJLH01000064.1 Protein Homology CDS 32344 33888 . - 0 ID=cds-WP_001315948.1;Parent=gene-AD39_RS02360;Dbxref=GenBank:WP_001315948.1;Name=WP_001315948.1;Ontology_term=GO:0055085,GO:0043190;gbkey=CDS;gene=malF;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418457.1;locus_tag=AD39_RS02360;product=maltose ABC transporter permease MalF;protein_id=WP_001315948.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 34042 35232 . - . ID=gene-AD39_RS02355;Name=malE;gbkey=Gene;gene=malE;gene_biotype=protein_coding;locus_tag=AD39_RS02355;old_locus_tag=AD39_4638 NZ_JJLH01000064.1 Protein Homology CDS 34042 35232 . - 0 ID=cds-WP_000695387.1;Parent=gene-AD39_RS02355;Dbxref=GenBank:WP_000695387.1;Name=WP_000695387.1;Ontology_term=GO:0008643,GO:0055085,GO:0015144;gbkey=CDS;gene=malE;go_function=carbohydrate transmembrane transporter activity|0015144||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000695396.1;locus_tag=AD39_RS02355;product=maltose/maltodextrin ABC transporter substrate-binding protein MalE;protein_id=WP_000695387.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 35597 36712 . + . ID=gene-AD39_RS02350;Name=malK;gbkey=Gene;gene=malK;gene_biotype=protein_coding;locus_tag=AD39_RS02350;old_locus_tag=AD39_4639 NZ_JJLH01000064.1 Protein Homology CDS 35597 36712 . + 0 ID=cds-WP_000179165.1;Parent=gene-AD39_RS02350;Dbxref=GenBank:WP_000179165.1;Name=WP_000179165.1;Ontology_term=GO:0008643,GO:0055085,GO:0005524,GO:0140359,GO:0043190;gbkey=CDS;gene=malK;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=ATP binding|0005524||IEA,ABC-type transporter activity|0140359||IEA;go_process=carbohydrate transport|0008643||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011915502.1;locus_tag=AD39_RS02350;product=maltose/maltodextrin ABC transporter ATP-binding protein MalK;protein_id=WP_000179165.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 36784 38124 . + . ID=gene-AD39_RS02345;Name=lamB;gbkey=Gene;gene=lamB;gene_biotype=protein_coding;locus_tag=AD39_RS02345;old_locus_tag=AD39_4640 NZ_JJLH01000064.1 Protein Homology CDS 36784 38124 . + 0 ID=cds-WP_000973658.1;Parent=gene-AD39_RS02345;Dbxref=GenBank:WP_000973658.1;Name=WP_000973658.1;gbkey=CDS;gene=lamB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313046.1;locus_tag=AD39_RS02345;product=maltoporin LamB;protein_id=WP_000973658.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 38276 39196 . + . ID=gene-AD39_RS02340;Name=malM;gbkey=Gene;gene=malM;gene_biotype=protein_coding;locus_tag=AD39_RS02340;old_locus_tag=AD39_4641 NZ_JJLH01000064.1 Protein Homology CDS 38276 39196 . + 0 ID=cds-WP_000783444.1;Parent=gene-AD39_RS02340;Dbxref=GenBank:WP_000783444.1;Name=WP_000783444.1;Ontology_term=GO:0008643,GO:0042597;gbkey=CDS;gene=malM;go_component=periplasmic space|0042597||IEA;go_process=carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313047.1;locus_tag=AD39_RS02340;product=maltose operon protein MalM;protein_id=WP_000783444.1;transl_table=11 NZ_JJLH01000064.1 RefSeq pseudogene 39425 41005 . + . ID=gene-AD39_RS02335;Name=AD39_RS02335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS02335;old_locus_tag=AD39_4644;pseudo=true NZ_JJLH01000064.1 Protein Homology CDS 39425 41005 . + 0 ID=cds-AD39_RS02335;Parent=gene-AD39_RS02335;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000579104.1;locus_tag=AD39_RS02335;product=SopA family protein;pseudo=true;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 41228 41725 . + . ID=gene-AD39_RS02330;Name=ubiC;gbkey=Gene;gene=ubiC;gene_biotype=protein_coding;locus_tag=AD39_RS02330;old_locus_tag=AD39_4645 NZ_JJLH01000064.1 Protein Homology CDS 41228 41725 . + 0 ID=cds-WP_001297295.1;Parent=gene-AD39_RS02330;Dbxref=GenBank:WP_001297295.1;Name=WP_001297295.1;Ontology_term=GO:0008813;gbkey=CDS;gene=ubiC;go_function=chorismate lyase activity|0008813||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709881.2;locus_tag=AD39_RS02330;product=chorismate lyase;protein_id=WP_001297295.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 41738 42610 . + . ID=gene-AD39_RS02325;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=AD39_RS02325;old_locus_tag=AD39_4646 NZ_JJLH01000064.1 Protein Homology CDS 41738 42610 . + 0 ID=cds-WP_000455228.1;Parent=gene-AD39_RS02325;Dbxref=GenBank:WP_000455228.1;Name=WP_000455228.1;Ontology_term=GO:0006744,GO:0008412;gbkey=CDS;gene=ubiA;go_function=4-hydroxybenzoate polyprenyltransferase activity|0008412||IEA;go_process=ubiquinone biosynthetic process|0006744||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313050.1;locus_tag=AD39_RS02325;product=4-hydroxybenzoate octaprenyltransferase;protein_id=WP_000455228.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 42765 45188 . - . ID=gene-AD39_RS02320;Name=plsB;gbkey=Gene;gene=plsB;gene_biotype=protein_coding;locus_tag=AD39_RS02320;old_locus_tag=AD39_4647 NZ_JJLH01000064.1 Protein Homology CDS 42765 45188 . - 0 ID=cds-WP_001385068.1;Parent=gene-AD39_RS02320;Dbxref=GenBank:WP_001385068.1;Name=WP_001385068.1;Ontology_term=GO:0008654,GO:0004366;gbkey=CDS;gene=plsB;go_function=glycerol-3-phosphate O-acyltransferase activity|0004366||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418465.4;locus_tag=AD39_RS02320;product=glycerol-3-phosphate 1-O-acyltransferase PlsB;protein_id=WP_001385068.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 45359 45727 . + . ID=gene-AD39_RS02315;Name=dgkA;gbkey=Gene;gene=dgkA;gene_biotype=protein_coding;locus_tag=AD39_RS02315;old_locus_tag=AD39_4648 NZ_JJLH01000064.1 Protein Homology CDS 45359 45727 . + 0 ID=cds-WP_000002907.1;Parent=gene-AD39_RS02315;Dbxref=GenBank:WP_000002907.1;Name=WP_000002907.1;gbkey=CDS;gene=dgkA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313052.1;locus_tag=AD39_RS02315;product=diacylglycerol kinase;protein_id=WP_000002907.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 45837 46445 . + . ID=gene-AD39_RS02310;Name=lexA;gbkey=Gene;gene=lexA;gene_biotype=protein_coding;locus_tag=AD39_RS02310;old_locus_tag=AD39_4649 NZ_JJLH01000064.1 Protein Homology CDS 45837 46445 . + 0 ID=cds-WP_000646078.1;Parent=gene-AD39_RS02310;Dbxref=GenBank:WP_000646078.1;Name=WP_000646078.1;Ontology_term=GO:0009432,GO:0045892,GO:0004252;gbkey=CDS;gene=lexA;go_function=serine-type endopeptidase activity|0004252||IEA;go_process=SOS response|0009432||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000646075.1;locus_tag=AD39_RS02310;product=transcriptional repressor LexA;protein_id=WP_000646078.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 46518 47843 . + . ID=gene-AD39_RS02305;Name=dinF;gbkey=Gene;gene=dinF;gene_biotype=protein_coding;locus_tag=AD39_RS02305;old_locus_tag=AD39_4650 NZ_JJLH01000064.1 Protein Homology CDS 46518 47843 . + 0 ID=cds-WP_001298861.1;Parent=gene-AD39_RS02305;Dbxref=GenBank:WP_001298861.1;Name=WP_001298861.1;Ontology_term=GO:0055085,GO:0015297,GO:0042910,GO:0016020;gbkey=CDS;gene=dinF;go_component=membrane|0016020||IEA;go_function=antiporter activity|0015297||IEA,xenobiotic transmembrane transporter activity|0042910||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313054.4;locus_tag=AD39_RS02305;product=MATE family efflux transporter DinF;protein_id=WP_001298861.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 47959 48168 . + . ID=gene-AD39_RS02300;Name=yjbJ;gbkey=Gene;gene=yjbJ;gene_biotype=protein_coding;locus_tag=AD39_RS02300;old_locus_tag=AD39_4651 NZ_JJLH01000064.1 Protein Homology CDS 47959 48168 . + 0 ID=cds-WP_001030593.1;Parent=gene-AD39_RS02300;Dbxref=GenBank:WP_001030593.1;Name=WP_001030593.1;gbkey=CDS;gene=yjbJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313055.1;locus_tag=AD39_RS02300;product=CsbD family protein;protein_id=WP_001030593.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 48210 48725 . - . ID=gene-AD39_RS02295;Name=zur;gbkey=Gene;gene=zur;gene_biotype=protein_coding;locus_tag=AD39_RS02295;old_locus_tag=AD39_4652 NZ_JJLH01000064.1 Protein Homology CDS 48210 48725 . - 0 ID=cds-WP_001295691.1;Parent=gene-AD39_RS02295;Dbxref=GenBank:WP_001295691.1;Name=WP_001295691.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=zur;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418470.4;locus_tag=AD39_RS02295;product=zinc uptake transcriptional repressor Zur;protein_id=WP_001295691.1;transl_table=11 NZ_JJLH01000064.1 RefSeq pseudogene 49043 50028 . + . ID=gene-AD39_RS02285;Name=AD39_RS02285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS02285;old_locus_tag=AD39_4654;pseudo=true NZ_JJLH01000064.1 Protein Homology CDS 49043 50028 . + 0 ID=cds-AD39_RS02285;Parent=gene-AD39_RS02285;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_105478490.1;locus_tag=AD39_RS02285;product=DUF2713 domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 50392 51429 . + . ID=gene-AD39_RS02280;Name=dusA;gbkey=Gene;gene=dusA;gene_biotype=protein_coding;locus_tag=AD39_RS02280;old_locus_tag=AD39_4655 NZ_JJLH01000064.1 Protein Homology CDS 50392 51429 . + 0 ID=cds-WP_001298868.1;Parent=gene-AD39_RS02280;Dbxref=GenBank:WP_001298868.1;Name=WP_001298868.1;Ontology_term=GO:0002943,GO:0017150,GO:0050660;gbkey=CDS;gene=dusA;go_function=tRNA dihydrouridine synthase activity|0017150||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=tRNA dihydrouridine synthesis|0002943||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313058.1;locus_tag=AD39_RS02280;product=tRNA dihydrouridine(20/20a) synthase DusA;protein_id=WP_001298868.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 51563 51805 . + . ID=gene-AD39_RS02275;Name=pspG;gbkey=Gene;gene=pspG;gene_biotype=protein_coding;locus_tag=AD39_RS02275;old_locus_tag=AD39_4656 NZ_JJLH01000064.1 Protein Homology CDS 51563 51805 . + 0 ID=cds-WP_000891404.1;Parent=gene-AD39_RS02275;Dbxref=GenBank:WP_000891404.1;Name=WP_000891404.1;gbkey=CDS;gene=pspG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313059.2;locus_tag=AD39_RS02275;product=envelope stress response protein PspG;protein_id=WP_000891404.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 51971 52954 . - . ID=gene-AD39_RS02270;Name=qorA;gbkey=Gene;gene=qorA;gene_biotype=protein_coding;locus_tag=AD39_RS02270;old_locus_tag=AD39_4657 NZ_JJLH01000064.1 Protein Homology CDS 51971 52954 . - 0 ID=cds-WP_000235522.1;Parent=gene-AD39_RS02270;Dbxref=GenBank:WP_000235522.1;Name=WP_000235522.1;gbkey=CDS;gene=qorA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313060.1;locus_tag=AD39_RS02270;product=quinone oxidoreductase;protein_id=WP_000235522.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 53037 54452 . + . ID=gene-AD39_RS02265;Name=dnaB;gbkey=Gene;gene=dnaB;gene_biotype=protein_coding;locus_tag=AD39_RS02265;old_locus_tag=AD39_4658 NZ_JJLH01000064.1 Protein Homology CDS 53037 54452 . + 0 ID=cds-WP_001434078.1;Parent=gene-AD39_RS02265;Dbxref=GenBank:WP_001434078.1;Name=WP_001434078.1;gbkey=CDS;gene=dnaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418476.1;locus_tag=AD39_RS02265;product=replicative DNA helicase;protein_id=WP_001434078.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 54505 55584 . + . ID=gene-AD39_RS02260;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=AD39_RS02260;old_locus_tag=AD39_4659 NZ_JJLH01000064.1 Protein Homology CDS 54505 55584 . + 0 ID=cds-WP_001147324.1;Parent=gene-AD39_RS02260;Dbxref=GenBank:WP_001147324.1;Name=WP_001147324.1;Ontology_term=GO:0006522,GO:0009252,GO:0008784;gbkey=CDS;gene=alr;go_function=alanine racemase activity|0008784||IEA;go_process=alanine metabolic process|0006522||IEA,peptidoglycan biosynthetic process|0009252||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418477.1;locus_tag=AD39_RS02260;product=alanine racemase;protein_id=WP_001147324.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 55837 57030 . + . ID=gene-AD39_RS02255;Name=tyrB;gbkey=Gene;gene=tyrB;gene_biotype=protein_coding;locus_tag=AD39_RS02255;old_locus_tag=AD39_4661 NZ_JJLH01000064.1 Protein Homology CDS 55837 57030 . + 0 ID=cds-WP_000486964.1;Parent=gene-AD39_RS02255;Dbxref=GenBank:WP_000486964.1;Name=WP_000486964.1;gbkey=CDS;gene=tyrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313063.1;locus_tag=AD39_RS02255;product=aromatic amino acid transaminase;protein_id=WP_000486964.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 57252 57503 . - . ID=gene-AD39_RS29870;Name=AD39_RS29870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29870 NZ_JJLH01000064.1 GeneMarkS-2+ CDS 57252 57503 . - 0 ID=cds-WP_000275035.1;Parent=gene-AD39_RS29870;Dbxref=GenBank:WP_000275035.1;Name=WP_000275035.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS29870;product=hypothetical protein;protein_id=WP_000275035.1;transl_table=11 NZ_JJLH01000064.1 RefSeq pseudogene 57533 57755 . - . ID=gene-AD39_RS29875;Name=AD39_RS29875;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29875;pseudo=true NZ_JJLH01000064.1 Protein Homology CDS 57533 57755 . - 0 ID=cds-AD39_RS29875;Parent=gene-AD39_RS29875;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165333.1;locus_tag=AD39_RS29875;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 58157 58870 . + . ID=gene-AD39_RS0125670;Name=aphA;gbkey=Gene;gene=aphA;gene_biotype=protein_coding;locus_tag=AD39_RS0125670;old_locus_tag=AD39_4663 NZ_JJLH01000064.1 Protein Homology CDS 58157 58870 . + 0 ID=cds-WP_032221483.1;Parent=gene-AD39_RS0125670;Dbxref=GenBank:WP_032221483.1;Name=WP_032221483.1;Ontology_term=GO:0003993,GO:0030288;gbkey=CDS;gene=aphA;go_component=outer membrane-bounded periplasmic space|0030288||IEA;go_function=acid phosphatase activity|0003993||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418479.1;locus_tag=AD39_RS0125670;product=acid phosphatase AphA;protein_id=WP_032221483.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 58981 59397 . + . ID=gene-AD39_RS02245;Name=yjbQ;gbkey=Gene;gene=yjbQ;gene_biotype=protein_coding;locus_tag=AD39_RS02245;old_locus_tag=AD39_4664 NZ_JJLH01000064.1 Protein Homology CDS 58981 59397 . + 0 ID=cds-WP_032283644.1;Parent=gene-AD39_RS02245;Dbxref=GenBank:WP_032283644.1;Name=WP_032283644.1;Ontology_term=GO:0003824,GO:0005737;gbkey=CDS;gene=yjbQ;go_component=cytoplasm|0005737||IEA;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313065.1;locus_tag=AD39_RS02245;product=secondary thiamine-phosphate synthase enzyme YjbQ;protein_id=WP_032283644.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 59401 59757 . + . ID=gene-AD39_RS02240;Name=yjbR;gbkey=Gene;gene=yjbR;gene_biotype=protein_coding;locus_tag=AD39_RS02240;old_locus_tag=AD39_4665 NZ_JJLH01000064.1 Protein Homology CDS 59401 59757 . + 0 ID=cds-WP_000155657.1;Parent=gene-AD39_RS02240;Dbxref=GenBank:WP_000155657.1;Name=WP_000155657.1;Ontology_term=GO:0003677;gbkey=CDS;gene=yjbR;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313066.1;locus_tag=AD39_RS02240;product=MmcQ/YjbR family DNA-binding protein;protein_id=WP_000155657.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 59792 62614 . - . ID=gene-AD39_RS02235;Name=uvrA;gbkey=Gene;gene=uvrA;gene_biotype=protein_coding;locus_tag=AD39_RS02235;old_locus_tag=AD39_4666 NZ_JJLH01000064.1 Protein Homology CDS 59792 62614 . - 0 ID=cds-WP_000357740.1;Parent=gene-AD39_RS02235;Dbxref=GenBank:WP_000357740.1;Name=WP_000357740.1;Ontology_term=GO:0006289,GO:0003677,GO:0005524,GO:0016887;gbkey=CDS;gene=uvrA;go_function=DNA binding|0003677||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;go_process=nucleotide-excision repair|0006289||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418482.1;locus_tag=AD39_RS02235;product=excinuclease ABC subunit UvrA;protein_id=WP_000357740.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 62868 63404 . + . ID=gene-AD39_RS02230;Name=ssb1;gbkey=Gene;gene=ssb1;gene_biotype=protein_coding;locus_tag=AD39_RS02230;old_locus_tag=AD39_4667 NZ_JJLH01000064.1 Protein Homology CDS 62868 63404 . + 0 ID=cds-WP_000168305.1;Parent=gene-AD39_RS02230;Dbxref=GenBank:WP_000168305.1;Name=WP_000168305.1;gbkey=CDS;gene=ssb1;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313068.1;locus_tag=AD39_RS02230;product=single-stranded DNA-binding protein SSB1;protein_id=WP_000168305.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 63503 63784 . - . ID=gene-AD39_RS02225;Name=yjcB;gbkey=Gene;gene=yjcB;gene_biotype=protein_coding;locus_tag=AD39_RS02225;old_locus_tag=AD39_4668 NZ_JJLH01000064.1 Protein Homology CDS 63503 63784 . - 0 ID=cds-WP_032283645.1;Parent=gene-AD39_RS02225;Dbxref=GenBank:WP_032283645.1;Name=WP_032283645.1;gbkey=CDS;gene=yjcB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313069.2;locus_tag=AD39_RS02225;product=YjcB family protein;protein_id=WP_032283645.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 64214 65800 . + . ID=gene-AD39_RS02220;Name=pdeC;gbkey=Gene;gene=pdeC;gene_biotype=protein_coding;locus_tag=AD39_RS02220;old_locus_tag=AD39_4669 NZ_JJLH01000064.1 Protein Homology CDS 64214 65800 . + 0 ID=cds-WP_000019539.1;Parent=gene-AD39_RS02220;Dbxref=GenBank:WP_000019539.1;Name=WP_000019539.1;gbkey=CDS;gene=pdeC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418485.1;locus_tag=AD39_RS02220;product=c-di-GMP phosphodiesterase PdeC;protein_id=WP_000019539.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 65803 66126 . - . ID=gene-AD39_RS02215;Name=soxS;gbkey=Gene;gene=soxS;gene_biotype=protein_coding;locus_tag=AD39_RS02215;old_locus_tag=AD39_4670 NZ_JJLH01000064.1 Protein Homology CDS 65803 66126 . - 0 ID=cds-WP_000019358.1;Parent=gene-AD39_RS02215;Dbxref=GenBank:WP_000019358.1;Name=WP_000019358.1;gbkey=CDS;gene=soxS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313071.1;locus_tag=AD39_RS02215;product=superoxide response transcriptional regulator SoxS;protein_id=WP_000019358.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 66212 66676 . + . ID=gene-AD39_RS02210;Name=soxR;gbkey=Gene;gene=soxR;gene_biotype=protein_coding;locus_tag=AD39_RS02210;old_locus_tag=AD39_4671 NZ_JJLH01000064.1 Protein Homology CDS 66212 66676 . + 0 ID=cds-WP_000412428.1;Parent=gene-AD39_RS02210;Dbxref=GenBank:WP_000412428.1;Name=WP_000412428.1;Ontology_term=GO:0006355,GO:0006979,GO:0003700,GO:0051537;gbkey=CDS;gene=soxR;go_function=DNA-binding transcription factor activity|0003700||IEA,2 iron%2C 2 sulfur cluster binding|0051537||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA,response to oxidative stress|0006979||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313072.1;locus_tag=AD39_RS02210;product=redox-sensitive transcriptional activator SoxR;protein_id=WP_000412428.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 67222 68571 . + . ID=gene-AD39_RS02205;Name=ghxP;gbkey=Gene;gene=ghxP;gene_biotype=protein_coding;gene_synonym=yjcD;locus_tag=AD39_RS02205;old_locus_tag=AD39_4673 NZ_JJLH01000064.1 Protein Homology CDS 67222 68571 . + 0 ID=cds-WP_032287659.1;Parent=gene-AD39_RS02205;Dbxref=GenBank:WP_032287659.1;Name=WP_032287659.1;gbkey=CDS;gene=ghxP;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132609.1;locus_tag=AD39_RS02205;product=guanine/hypoxanthine transporter GhxP;protein_id=WP_032287659.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 68722 70371 . + . ID=gene-AD39_RS02200;Name=yjcE;gbkey=Gene;gene=yjcE;gene_biotype=protein_coding;locus_tag=AD39_RS02200;old_locus_tag=AD39_4675 NZ_JJLH01000064.1 Protein Homology CDS 68722 70371 . + 0 ID=cds-WP_000402207.1;Parent=gene-AD39_RS02200;Dbxref=GenBank:WP_000402207.1;Name=WP_000402207.1;Ontology_term=GO:0006814,GO:0006885,GO:1902600,GO:0015385,GO:0016020;gbkey=CDS;gene=yjcE;go_component=membrane|0016020||IEA;go_function=sodium:proton antiporter activity|0015385||IEA;go_process=sodium ion transport|0006814||IEA,regulation of pH|0006885||IEA,proton transmembrane transport|1902600||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313074.1;locus_tag=AD39_RS02200;product=Na+/H+ antiporter;protein_id=WP_000402207.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 70525 71817 . - . ID=gene-AD39_RS02195;Name=yjcF;gbkey=Gene;gene=yjcF;gene_biotype=protein_coding;locus_tag=AD39_RS02195;old_locus_tag=AD39_4676 NZ_JJLH01000064.1 Protein Homology CDS 70525 71817 . - 0 ID=cds-WP_001270091.1;Parent=gene-AD39_RS02195;Dbxref=GenBank:WP_001270091.1;Name=WP_001270091.1;gbkey=CDS;gene=yjcF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709843.1;locus_tag=AD39_RS02195;product=pentapeptide repeat-containing protein;protein_id=WP_001270091.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 71995 73644 . - . ID=gene-AD39_RS02190;Name=actP;gbkey=Gene;gene=actP;gene_biotype=protein_coding;locus_tag=AD39_RS02190;old_locus_tag=AD39_4677 NZ_JJLH01000064.1 Protein Homology CDS 71995 73644 . - 0 ID=cds-WP_000832572.1;Parent=gene-AD39_RS02190;Dbxref=GenBank:WP_000832572.1;Name=WP_000832572.1;Ontology_term=GO:0006814,GO:0015123,GO:0015370,GO:0031402,GO:0005886;gbkey=CDS;gene=actP;go_component=plasma membrane|0005886||IEA;go_function=acetate transmembrane transporter activity|0015123||IEA,solute:sodium symporter activity|0015370||IEA,sodium ion binding|0031402||IEA;go_process=sodium ion transport|0006814||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418491.1;locus_tag=AD39_RS02190;product=cation/acetate symporter ActP;protein_id=WP_000832572.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 73641 73955 . - . ID=gene-AD39_RS02185;Name=yjcH;gbkey=Gene;gene=yjcH;gene_biotype=protein_coding;locus_tag=AD39_RS02185;old_locus_tag=AD39_4678 NZ_JJLH01000064.1 Protein Homology CDS 73641 73955 . - 0 ID=cds-WP_001014565.1;Parent=gene-AD39_RS02185;Dbxref=GenBank:WP_001014565.1;Name=WP_001014565.1;Ontology_term=GO:0016020;gbkey=CDS;gene=yjcH;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418492.1;locus_tag=AD39_RS02185;product=DUF485 domain-containing protein;protein_id=WP_001014565.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 74155 76113 . - . ID=gene-AD39_RS02180;Name=acs;gbkey=Gene;gene=acs;gene_biotype=protein_coding;locus_tag=AD39_RS02180;old_locus_tag=AD39_4679 NZ_JJLH01000064.1 Protein Homology CDS 74155 76113 . - 0 ID=cds-WP_000078239.1;Parent=gene-AD39_RS02180;Dbxref=GenBank:WP_000078239.1;Name=WP_000078239.1;Ontology_term=GO:0019427,GO:0003987,GO:0016208;gbkey=CDS;gene=acs;go_function=acetate-CoA ligase activity|0003987||IEA,AMP binding|0016208||IEA;go_process=acetyl-CoA biosynthetic process from acetate|0019427||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418493.1;locus_tag=AD39_RS02180;product=acetate--CoA ligase;protein_id=WP_000078239.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 76505 77941 . + . ID=gene-AD39_RS02175;Name=nrfA;gbkey=Gene;gene=nrfA;gene_biotype=protein_coding;locus_tag=AD39_RS02175;old_locus_tag=AD39_4680 NZ_JJLH01000064.1 Protein Homology CDS 76505 77941 . + 0 ID=cds-WP_000196875.1;Parent=gene-AD39_RS02175;Dbxref=GenBank:WP_000196875.1;Name=WP_000196875.1;Ontology_term=GO:0008152,GO:0005509,GO:0020037,GO:0042279,GO:0042597;gbkey=CDS;gene=nrfA;go_component=periplasmic space|0042597||IEA;go_function=calcium ion binding|0005509||IEA,heme binding|0020037||IEA,nitrite reductase (cytochrome%2C ammonia-forming) activity|0042279||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313079.1;locus_tag=AD39_RS02175;product=ammonia-forming nitrite reductase cytochrome c552 subunit;protein_id=WP_000196875.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 77986 78552 . + . ID=gene-AD39_RS02170;Name=nrfB;gbkey=Gene;gene=nrfB;gene_biotype=protein_coding;locus_tag=AD39_RS02170;old_locus_tag=AD39_4681 NZ_JJLH01000064.1 Protein Homology CDS 77986 78552 . + 0 ID=cds-WP_001295391.1;Parent=gene-AD39_RS02170;Dbxref=GenBank:WP_001295391.1;Name=WP_001295391.1;Ontology_term=GO:0008152,GO:0042597;gbkey=CDS;gene=nrfB;go_component=periplasmic space|0042597||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418495.2;locus_tag=AD39_RS02170;product=cytochrome c nitrite reductase pentaheme subunit;protein_id=WP_001295391.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 78549 79220 . + . ID=gene-AD39_RS02165;Name=nrfC;gbkey=Gene;gene=nrfC;gene_biotype=protein_coding;locus_tag=AD39_RS02165;old_locus_tag=AD39_4682 NZ_JJLH01000064.1 Protein Homology CDS 78549 79220 . + 0 ID=cds-WP_000220281.1;Parent=gene-AD39_RS02165;Dbxref=GenBank:WP_000220281.1;Name=WP_000220281.1;gbkey=CDS;gene=nrfC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313081.1;locus_tag=AD39_RS02165;product=cytochrome c nitrite reductase Fe-S protein;protein_id=WP_000220281.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 79217 80173 . + . ID=gene-AD39_RS02160;Name=nrfD;gbkey=Gene;gene=nrfD;gene_biotype=protein_coding;locus_tag=AD39_RS02160;old_locus_tag=AD39_4683 NZ_JJLH01000064.1 Protein Homology CDS 79217 80173 . + 0 ID=cds-WP_000195173.1;Parent=gene-AD39_RS02160;Dbxref=GenBank:WP_000195173.1;Name=WP_000195173.1;gbkey=CDS;gene=nrfD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418497.1;locus_tag=AD39_RS02160;product=cytochrome c nitrite reductase subunit NrfD;protein_id=WP_000195173.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 80193 81911 . + . ID=gene-AD39_RS02155;Name=nrfE;gbkey=Gene;gene=nrfE;gene_biotype=protein_coding;locus_tag=AD39_RS02155;old_locus_tag=AD39_4684 NZ_JJLH01000064.1 Protein Homology CDS 80193 81911 . + 0 ID=cds-WP_071524619.1;Parent=gene-AD39_RS02155;Dbxref=GenBank:WP_071524619.1;Name=WP_071524619.1;gbkey=CDS;gene=nrfE;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014640253.1;locus_tag=AD39_RS02155;product=heme lyase CcmF/NrfE family subunit;protein_id=WP_071524619.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 81904 82287 . + . ID=gene-AD39_RS02150;Name=nrfF;gbkey=Gene;gene=nrfF;gene_biotype=protein_coding;locus_tag=AD39_RS02150;old_locus_tag=AD39_4685 NZ_JJLH01000064.1 Protein Homology CDS 81904 82287 . + 0 ID=cds-WP_001032546.1;Parent=gene-AD39_RS02150;Dbxref=GenBank:WP_001032546.1;Name=WP_001032546.1;gbkey=CDS;gene=nrfF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418499.1;locus_tag=AD39_RS02150;product=heme lyase NrfEFG subunit NrfF;protein_id=WP_001032546.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 82284 82880 . + . ID=gene-AD39_RS02145;Name=nrfG;gbkey=Gene;gene=nrfG;gene_biotype=protein_coding;locus_tag=AD39_RS02145;old_locus_tag=AD39_4686 NZ_JJLH01000064.1 Protein Homology CDS 82284 82880 . + 0 ID=cds-WP_000662608.1;Parent=gene-AD39_RS02145;Dbxref=GenBank:WP_000662608.1;Name=WP_000662608.1;gbkey=CDS;gene=nrfG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709852.1;locus_tag=AD39_RS02145;product=heme lyase NrfEFG subunit NrfG;protein_id=WP_000662608.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 83222 84535 . + . ID=gene-AD39_RS02140;Name=gltP;gbkey=Gene;gene=gltP;gene_biotype=protein_coding;locus_tag=AD39_RS02140;old_locus_tag=AD39_4688 NZ_JJLH01000064.1 Protein Homology CDS 83222 84535 . + 0 ID=cds-WP_000835799.1;Parent=gene-AD39_RS02140;Dbxref=GenBank:WP_000835799.1;Name=WP_000835799.1;Ontology_term=GO:0006835,GO:0015293,GO:0016020;gbkey=CDS;gene=gltP;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA;go_process=dicarboxylic acid transport|0006835||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313086.1;locus_tag=AD39_RS02140;product=glutamate/aspartate:proton symporter GltP;protein_id=WP_000835799.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 84613 85302 . - . ID=gene-AD39_RS02135;Name=yjcO;gbkey=Gene;gene=yjcO;gene_biotype=protein_coding;locus_tag=AD39_RS02135;old_locus_tag=AD39_4689 NZ_JJLH01000064.1 Protein Homology CDS 84613 85302 . - 0 ID=cds-WP_000719886.1;Parent=gene-AD39_RS02135;Dbxref=GenBank:WP_000719886.1;Name=WP_000719886.1;gbkey=CDS;gene=yjcO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313087.1;locus_tag=AD39_RS02135;product=Sel1 family TPR-like repeat protein YjcO;protein_id=WP_000719886.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 85396 87543 . - . ID=gene-AD39_RS02130;Name=fdhF;gbkey=Gene;gene=fdhF;gene_biotype=protein_coding;locus_tag=AD39_RS02130;old_locus_tag=AD39_4690 NZ_JJLH01000064.1 Protein Homology CDS 85396 87543 . - 0 ID=cds-WP_001300547.1;Parent=gene-AD39_RS02130;Dbxref=GenBank:WP_001300547.1;Name=WP_001300547.1;Ontology_term=GO:0015942,GO:0008863,GO:0009326;gbkey=CDS;gene=fdhF;go_component=formate dehydrogenase complex|0009326||IEA;go_function=formate dehydrogenase (NAD+) activity|0008863||IEA;go_process=formate metabolic process|0015942||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418503.1;locus_tag=AD39_RS02130;product=formate dehydrogenase subunit alpha;protein_id=WP_001300547.1;transl_except=(pos:complement(87124..87126)%2Caa:Sec);transl_table=11 NZ_JJLH01000064.1 RefSeq gene 87741 89207 . - . ID=gene-AD39_RS02120;Name=mdtP;gbkey=Gene;gene=mdtP;gene_biotype=protein_coding;locus_tag=AD39_RS02120;old_locus_tag=AD39_4693 NZ_JJLH01000064.1 Protein Homology CDS 87741 89207 . - 0 ID=cds-WP_000610574.1;Parent=gene-AD39_RS02120;Dbxref=GenBank:WP_000610574.1;Name=WP_000610574.1;gbkey=CDS;gene=mdtP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709855.1;locus_tag=AD39_RS02120;product=multidrug efflux transporter outer membrane subunit MdtP;protein_id=WP_000610574.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 89204 91255 . - . ID=gene-AD39_RS02115;Name=mdtO;gbkey=Gene;gene=mdtO;gene_biotype=protein_coding;locus_tag=AD39_RS02115;old_locus_tag=AD39_4694 NZ_JJLH01000064.1 Protein Homology CDS 89204 91255 . - 0 ID=cds-WP_001275199.1;Parent=gene-AD39_RS02115;Dbxref=GenBank:WP_001275199.1;Name=WP_001275199.1;gbkey=CDS;gene=mdtO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418505.2;locus_tag=AD39_RS02115;product=multidrug efflux transporter permease subunit MdtO;protein_id=WP_001275199.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 91255 92286 . - . ID=gene-AD39_RS02110;Name=mdtN;gbkey=Gene;gene=mdtN;gene_biotype=protein_coding;locus_tag=AD39_RS02110;old_locus_tag=AD39_4695 NZ_JJLH01000064.1 Protein Homology CDS 91255 92286 . - 0 ID=cds-WP_000446349.1;Parent=gene-AD39_RS02110;Dbxref=GenBank:WP_000446349.1;Name=WP_000446349.1;gbkey=CDS;gene=mdtN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418506.1;locus_tag=AD39_RS02110;product=multidrug efflux transporter periplasmic adaptor subunit MdtN;protein_id=WP_000446349.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 92305 92580 . - . ID=gene-AD39_RS0125675;Name=ytcA;gbkey=Gene;gene=ytcA;gene_biotype=protein_coding;locus_tag=AD39_RS0125675 NZ_JJLH01000064.1 Protein Homology CDS 92305 92580 . - 0 ID=cds-WP_001297587.1;Parent=gene-AD39_RS0125675;Dbxref=GenBank:WP_001297587.1;Name=WP_001297587.1;gbkey=CDS;gene=ytcA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165334.1;locus_tag=AD39_RS0125675;product=YtcA family lipoprotein;protein_id=WP_001297587.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 92789 94774 . - . ID=gene-AD39_RS02105;Name=yjcS;gbkey=Gene;gene=yjcS;gene_biotype=protein_coding;locus_tag=AD39_RS02105;old_locus_tag=AD39_4697 NZ_JJLH01000064.1 Protein Homology CDS 92789 94774 . - 0 ID=cds-WP_032283647.1;Parent=gene-AD39_RS02105;Dbxref=GenBank:WP_032283647.1;Name=WP_032283647.1;gbkey=CDS;gene=yjcS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418507.2;locus_tag=AD39_RS02105;product=alkyl sulfatase YjcS;protein_id=WP_032283647.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 95027 95344 . + . ID=gene-AD39_RS02100;Name=AD39_RS02100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS02100;old_locus_tag=AD39_4698 NZ_JJLH01000064.1 Protein Homology CDS 95027 95344 . + 0 ID=cds-WP_001183287.1;Parent=gene-AD39_RS02100;Dbxref=GenBank:WP_001183287.1;Name=WP_001183287.1;Ontology_term=GO:0005975,GO:0016853;gbkey=CDS;go_function=isomerase activity|0016853||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001183281.1;locus_tag=AD39_RS02100;product=RpiB/LacA/LacB family sugar-phosphate isomerase;protein_id=WP_001183287.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 95413 95742 . + . ID=gene-AD39_RS02095;Name=yjdP;gbkey=Gene;gene=yjdP;gene_biotype=protein_coding;locus_tag=AD39_RS02095;old_locus_tag=AD39_4699 NZ_JJLH01000064.1 Protein Homology CDS 95413 95742 . + 0 ID=cds-WP_000819746.1;Parent=gene-AD39_RS02095;Dbxref=GenBank:WP_000819746.1;Name=WP_000819746.1;gbkey=CDS;gene=yjdP;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026281.1;locus_tag=AD39_RS02095;product=DDRRRQL repeat protein YjdP;protein_id=WP_000819746.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 95890 96648 . - . ID=gene-AD39_RS02090;Name=phnP;gbkey=Gene;gene=phnP;gene_biotype=protein_coding;locus_tag=AD39_RS02090;old_locus_tag=AD39_4700 NZ_JJLH01000064.1 Protein Homology CDS 95890 96648 . - 0 ID=cds-WP_000059926.1;Parent=gene-AD39_RS02090;Dbxref=GenBank:WP_000059926.1;Name=WP_000059926.1;Ontology_term=GO:0019700,GO:0008081;gbkey=CDS;gene=phnP;go_function=phosphoric diester hydrolase activity|0008081||IEA;go_process=organic phosphonate catabolic process|0019700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418516.1;locus_tag=AD39_RS02090;product=phosphonate metabolism protein PhnP;protein_id=WP_000059926.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 96650 97084 . - . ID=gene-AD39_RS02085;Name=phnO;gbkey=Gene;gene=phnO;gene_biotype=protein_coding;locus_tag=AD39_RS02085;old_locus_tag=AD39_4701 NZ_JJLH01000064.1 Protein Homology CDS 96650 97084 . - 0 ID=cds-WP_001110490.1;Parent=gene-AD39_RS02085;Dbxref=GenBank:WP_001110490.1;Name=WP_001110490.1;gbkey=CDS;gene=phnO;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418517.1;locus_tag=AD39_RS02085;product=aminoalkylphosphonate N-acetyltransferase;protein_id=WP_001110490.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 97071 97628 . - . ID=gene-AD39_RS02080;Name=phnN;gbkey=Gene;gene=phnN;gene_biotype=protein_coding;locus_tag=AD39_RS02080;old_locus_tag=AD39_4702 NZ_JJLH01000064.1 Protein Homology CDS 97071 97628 . - 0 ID=cds-WP_000971891.1;Parent=gene-AD39_RS02080;Dbxref=GenBank:WP_000971891.1;Name=WP_000971891.1;Ontology_term=GO:0006015,GO:0033863;gbkey=CDS;gene=phnN;go_function=ribose 1%2C5-bisphosphate phosphokinase activity|0033863||IEA;go_process=5-phosphoribose 1-diphosphate biosynthetic process|0006015||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418518.1;locus_tag=AD39_RS02080;product=ribose 1%2C5-bisphosphokinase;protein_id=WP_000971891.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 97628 98764 . - . ID=gene-AD39_RS02075;Name=phnM;gbkey=Gene;gene=phnM;gene_biotype=protein_coding;locus_tag=AD39_RS02075;old_locus_tag=AD39_4703 NZ_JJLH01000064.1 Protein Homology CDS 97628 98764 . - 0 ID=cds-WP_000586301.1;Parent=gene-AD39_RS02075;Dbxref=GenBank:WP_000586301.1;Name=WP_000586301.1;Ontology_term=GO:0019700,GO:0016810;gbkey=CDS;gene=phnM;go_function=hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA;go_process=organic phosphonate catabolic process|0019700||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313105.1;locus_tag=AD39_RS02075;product=alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase;protein_id=WP_000586301.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 98761 99441 . - . ID=gene-AD39_RS02070;Name=phnL;gbkey=Gene;gene=phnL;gene_biotype=protein_coding;locus_tag=AD39_RS02070;old_locus_tag=AD39_4704 NZ_JJLH01000064.1 Protein Homology CDS 98761 99441 . - 0 ID=cds-WP_000611404.1;Parent=gene-AD39_RS02070;Dbxref=GenBank:WP_000611404.1;Name=WP_000611404.1;Ontology_term=GO:0019634,GO:0018835;gbkey=CDS;gene=phnL;go_function=carbon phosphorus lyase activity|0018835||IEA;go_process=organic phosphonate metabolic process|0019634||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418520.1;locus_tag=AD39_RS02070;product=phosphonate C-P lyase system protein PhnL;protein_id=WP_000611404.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 99552 100310 . - . ID=gene-AD39_RS02065;Name=phnK;gbkey=Gene;gene=phnK;gene_biotype=protein_coding;locus_tag=AD39_RS02065;old_locus_tag=AD39_4705 NZ_JJLH01000064.1 Protein Homology CDS 99552 100310 . - 0 ID=cds-WP_001039799.1;Parent=gene-AD39_RS02065;Dbxref=GenBank:WP_001039799.1;Name=WP_001039799.1;Ontology_term=GO:0019634,GO:0018835;gbkey=CDS;gene=phnK;go_function=carbon phosphorus lyase activity|0018835||IEA;go_process=organic phosphonate metabolic process|0019634||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026282.1;locus_tag=AD39_RS02065;product=phosphonate C-P lyase system protein PhnK;protein_id=WP_001039799.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 100307 101152 . - . ID=gene-AD39_RS02060;Name=phnJ;gbkey=Gene;gene=phnJ;gene_biotype=protein_coding;locus_tag=AD39_RS02060;old_locus_tag=AD39_4706 NZ_JJLH01000064.1 Protein Homology CDS 100307 101152 . - 0 ID=cds-WP_000002299.1;Parent=gene-AD39_RS02060;Dbxref=GenBank:WP_000002299.1;Name=WP_000002299.1;gbkey=CDS;gene=phnJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313108.1;locus_tag=AD39_RS02060;product=alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ;protein_id=WP_000002299.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 101145 102209 . - . ID=gene-AD39_RS02055;Name=phnI;gbkey=Gene;gene=phnI;gene_biotype=protein_coding;locus_tag=AD39_RS02055;old_locus_tag=AD39_4707 NZ_JJLH01000064.1 Protein Homology CDS 101145 102209 . - 0 ID=cds-WP_001331312.1;Parent=gene-AD39_RS02055;Dbxref=GenBank:WP_001331312.1;Name=WP_001331312.1;gbkey=CDS;gene=phnI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313109.1;locus_tag=AD39_RS02055;product=alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI;protein_id=WP_001331312.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 102209 102793 . - . ID=gene-AD39_RS02050;Name=phnH;gbkey=Gene;gene=phnH;gene_biotype=protein_coding;locus_tag=AD39_RS02050;old_locus_tag=AD39_4708 NZ_JJLH01000064.1 Protein Homology CDS 102209 102793 . - 0 ID=cds-WP_032287660.1;Parent=gene-AD39_RS02050;Dbxref=GenBank:WP_032287660.1;Name=WP_032287660.1;Ontology_term=GO:0019634;gbkey=CDS;gene=phnH;go_process=organic phosphonate metabolic process|0019634||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313110.1;locus_tag=AD39_RS02050;product=phosphonate C-P lyase system protein PhnH;protein_id=WP_032287660.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 102790 103242 . - . ID=gene-AD39_RS02045;Name=phnG;gbkey=Gene;gene=phnG;gene_biotype=protein_coding;locus_tag=AD39_RS02045;old_locus_tag=AD39_4709 NZ_JJLH01000064.1 Protein Homology CDS 102790 103242 . - 0 ID=cds-WP_000542796.1;Parent=gene-AD39_RS02045;Dbxref=GenBank:WP_000542796.1;Name=WP_000542796.1;Ontology_term=GO:0015716,GO:0019634;gbkey=CDS;gene=phnG;go_process=organic phosphonate transport|0015716||IEA,organic phosphonate metabolic process|0019634||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418525.1;locus_tag=AD39_RS02045;product=phosphonate C-P lyase system protein PhnG;protein_id=WP_000542796.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 103243 103968 . - . ID=gene-AD39_RS02040;Name=phnF;gbkey=Gene;gene=phnF;gene_biotype=protein_coding;locus_tag=AD39_RS02040;old_locus_tag=AD39_4710 NZ_JJLH01000064.1 Protein Homology CDS 103243 103968 . - 0 ID=cds-WP_001301447.1;Parent=gene-AD39_RS02040;Dbxref=GenBank:WP_001301447.1;Name=WP_001301447.1;gbkey=CDS;gene=phnF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313112.1;locus_tag=AD39_RS02040;product=phosphonate metabolism transcriptional regulator PhnF;protein_id=WP_001301447.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 103989 104768 . - . ID=gene-AD39_RS02035;Name=phnE;gbkey=Gene;gene=phnE;gene_biotype=protein_coding;locus_tag=AD39_RS02035;old_locus_tag=AD39_4711 NZ_JJLH01000064.1 Protein Homology CDS 103989 104768 . - 0 ID=cds-WP_001193500.1;Parent=gene-AD39_RS02035;Dbxref=GenBank:WP_001193500.1;Name=WP_001193500.1;Ontology_term=GO:0015716,GO:0015416,GO:0005886,GO:0055052;gbkey=CDS;gene=phnE;go_component=plasma membrane|0005886||IEA,ATP-binding cassette (ABC) transporter complex%2C substrate-binding subunit-containing|0055052||IEA;go_function=ABC-type phosphonate transporter activity|0015416||IEA;go_process=organic phosphonate transport|0015716||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313113.2;locus_tag=AD39_RS02035;product=phosphonate ABC transporter%2C permease protein PhnE;protein_id=WP_001193500.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 104829 105845 . - . ID=gene-AD39_RS02030;Name=phnD;gbkey=Gene;gene=phnD;gene_biotype=protein_coding;locus_tag=AD39_RS02030;old_locus_tag=AD39_4712 NZ_JJLH01000064.1 Protein Homology CDS 104829 105845 . - 0 ID=cds-WP_000992002.1;Parent=gene-AD39_RS02030;Dbxref=GenBank:WP_000992002.1;Name=WP_000992002.1;Ontology_term=GO:0015716,GO:0043190;gbkey=CDS;gene=phnD;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_process=organic phosphonate transport|0015716||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418529.1;locus_tag=AD39_RS02030;product=phosphonate ABC transporter substrate-binding protein;protein_id=WP_000992002.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 105870 106658 . - . ID=gene-AD39_RS02025;Name=phnC;gbkey=Gene;gene=phnC;gene_biotype=protein_coding;locus_tag=AD39_RS02025;old_locus_tag=AD39_4713 NZ_JJLH01000064.1 Protein Homology CDS 105870 106658 . - 0 ID=cds-WP_001193391.1;Parent=gene-AD39_RS02025;Dbxref=GenBank:WP_001193391.1;Name=WP_001193391.1;gbkey=CDS;gene=phnC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709835.2;locus_tag=AD39_RS02025;product=phosphonate ABC transporter ATP-binding protein;protein_id=WP_001193391.1;transl_table=11 NZ_JJLH01000064.1 RefSeq pseudogene 106794 107234 . - . ID=gene-AD39_RS02020;Name=yjdN;gbkey=Gene;gene=yjdN;gene_biotype=pseudogene;locus_tag=AD39_RS02020;old_locus_tag=AD39_4714;partial=true;pseudo=true;start_range=.,106794 NZ_JJLH01000064.1 Protein Homology CDS 106794 107234 . - 0 ID=cds-AD39_RS02020;Parent=gene-AD39_RS02020;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;gene=yjdN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418531.1;locus_tag=AD39_RS02020;partial=true;product=VOC family metalloprotein YjdN;pseudo=true;start_range=.,106794;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 107392 107727 . - . ID=gene-AD39_RS02015;Name=yjdM;gbkey=Gene;gene=yjdM;gene_biotype=protein_coding;locus_tag=AD39_RS02015;old_locus_tag=AD39_4715 NZ_JJLH01000064.1 Protein Homology CDS 107392 107727 . - 0 ID=cds-WP_001300891.1;Parent=gene-AD39_RS02015;Dbxref=GenBank:WP_001300891.1;Name=WP_001300891.1;gbkey=CDS;gene=yjdM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313117.1;locus_tag=AD39_RS02015;product=zinc ribbon domain-containing protein YjdM;protein_id=WP_001300891.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 108129 110357 . + . ID=gene-AD39_RS02010;Name=crfC;gbkey=Gene;gene=crfC;gene_biotype=protein_coding;locus_tag=AD39_RS02010;old_locus_tag=AD39_4716 NZ_JJLH01000064.1 Protein Homology CDS 108129 110357 . + 0 ID=cds-WP_000288592.1;Parent=gene-AD39_RS02010;Dbxref=GenBank:WP_000288592.1;Name=WP_000288592.1;Ontology_term=GO:0005525;gbkey=CDS;gene=crfC;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418533.1;locus_tag=AD39_RS02010;product=clamp-binding protein CrfC;protein_id=WP_000288592.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 110354 111232 . + . ID=gene-AD39_RS02005;Name=rdcB;gbkey=Gene;gene=rdcB;gene_biotype=protein_coding;locus_tag=AD39_RS02005;old_locus_tag=AD39_4717 NZ_JJLH01000064.1 Protein Homology CDS 110354 111232 . + 0 ID=cds-WP_000169184.1;Parent=gene-AD39_RS02005;Dbxref=GenBank:WP_000169184.1;Name=WP_000169184.1;gbkey=CDS;gene=rdcB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418534.4;locus_tag=AD39_RS02005;product=YjcZ-like family protein;protein_id=WP_000169184.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 111496 112998 . + . ID=gene-AD39_RS02000;Name=proP;gbkey=Gene;gene=proP;gene_biotype=protein_coding;locus_tag=AD39_RS02000;old_locus_tag=AD39_4718 NZ_JJLH01000064.1 Protein Homology CDS 111496 112998 . + 0 ID=cds-WP_001296882.1;Parent=gene-AD39_RS02000;Dbxref=GenBank:WP_001296882.1;Name=WP_001296882.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=proP;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709830.2;locus_tag=AD39_RS02000;product=glycine betaine/L-proline transporter ProP;protein_id=WP_001296882.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 113110 113199 . + . ID=gene-AD39_RS0125680;Name=pmrR;gbkey=Gene;gene=pmrR;gene_biotype=protein_coding;locus_tag=AD39_RS0125680 NZ_JJLH01000064.1 Protein Homology CDS 113110 113199 . + 0 ID=cds-WP_000797656.1;Parent=gene-AD39_RS0125680;Dbxref=GenBank:WP_000797656.1;Name=WP_000797656.1;gbkey=CDS;gene=pmrR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000797656.1;locus_tag=AD39_RS0125680;product=LpxT activity modulator PmrR;protein_id=WP_000797656.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 113175 114275 . - . ID=gene-AD39_RS01995;Name=pmrB;gbkey=Gene;gene=pmrB;gene_biotype=protein_coding;locus_tag=AD39_RS01995;old_locus_tag=AD39_4719 NZ_JJLH01000064.1 Protein Homology CDS 113175 114275 . - 0 ID=cds-WP_001051093.1;Parent=gene-AD39_RS01995;Dbxref=GenBank:WP_001051093.1;Name=WP_001051093.1;gbkey=CDS;gene=pmrB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709829.1;locus_tag=AD39_RS01995;product=two-component system sensor histidine kinase PmrB;protein_id=WP_001051093.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 114276 114944 . - . ID=gene-AD39_RS01990;Name=basR;gbkey=Gene;gene=basR;gene_biotype=protein_coding;locus_tag=AD39_RS01990;old_locus_tag=AD39_4720 NZ_JJLH01000064.1 Protein Homology CDS 114276 114944 . - 0 ID=cds-WP_000697919.1;Parent=gene-AD39_RS01990;Dbxref=GenBank:WP_000697919.1;Name=WP_000697919.1;gbkey=CDS;gene=basR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313122.1;locus_tag=AD39_RS01990;product=two-component system response regulator BasR;protein_id=WP_000697919.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 114941 116584 . - . ID=gene-AD39_RS01985;Name=eptA;gbkey=Gene;gene=eptA;gene_biotype=protein_coding;locus_tag=AD39_RS01985;old_locus_tag=AD39_4721 NZ_JJLH01000064.1 Protein Homology CDS 114941 116584 . - 0 ID=cds-WP_001298860.1;Parent=gene-AD39_RS01985;Dbxref=GenBank:WP_001298860.1;Name=WP_001298860.1;Ontology_term=GO:0016772;gbkey=CDS;gene=eptA;go_function=transferase activity%2C transferring phosphorus-containing groups|0016772||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418538.2;locus_tag=AD39_RS01985;product=phosphoethanolamine transferase EptA;protein_id=WP_001298860.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 116688 118025 . - . ID=gene-AD39_RS01980;Name=adiC;gbkey=Gene;gene=adiC;gene_biotype=protein_coding;locus_tag=AD39_RS01980;old_locus_tag=AD39_4722 NZ_JJLH01000064.1 Protein Homology CDS 116688 118025 . - 0 ID=cds-WP_000093154.1;Parent=gene-AD39_RS01980;Dbxref=GenBank:WP_000093154.1;Name=WP_000093154.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=adiC;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313124.1;locus_tag=AD39_RS01980;product=arginine/agmatine antiporter;protein_id=WP_000093154.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 118162 118923 . - . ID=gene-AD39_RS01975;Name=adiY;gbkey=Gene;gene=adiY;gene_biotype=protein_coding;locus_tag=AD39_RS01975;old_locus_tag=AD39_4723 NZ_JJLH01000064.1 Protein Homology CDS 118162 118923 . - 0 ID=cds-WP_001217059.1;Parent=gene-AD39_RS01975;Dbxref=GenBank:WP_001217059.1;Name=WP_001217059.1;gbkey=CDS;gene=adiY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313125.1;locus_tag=AD39_RS01975;product=DNA-binding transcriptional activator AdiY;protein_id=WP_001217059.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 119248 121515 . - . ID=gene-AD39_RS01970;Name=adiA;gbkey=Gene;gene=adiA;gene_biotype=protein_coding;locus_tag=AD39_RS01970;old_locus_tag=AD39_4724 NZ_JJLH01000064.1 Protein Homology CDS 119248 121515 . - 0 ID=cds-WP_001307519.1;Parent=gene-AD39_RS01970;Dbxref=GenBank:WP_001307519.1;Name=WP_001307519.1;Ontology_term=GO:0006520,GO:0016831;gbkey=CDS;gene=adiA;go_function=carboxy-lyase activity|0016831||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418541.2;locus_tag=AD39_RS01970;product=arginine decarboxylase;protein_id=WP_001307519.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 121714 122622 . - . ID=gene-AD39_RS01965;Name=melR;gbkey=Gene;gene=melR;gene_biotype=protein_coding;locus_tag=AD39_RS01965;old_locus_tag=AD39_4725 NZ_JJLH01000064.1 Protein Homology CDS 121714 122622 . - 0 ID=cds-WP_001090758.1;Parent=gene-AD39_RS01965;Dbxref=GenBank:WP_001090758.1;Name=WP_001090758.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=melR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418542.1;locus_tag=AD39_RS01965;product=transcriptional regulator MelR;protein_id=WP_001090758.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 122905 124260 . + . ID=gene-AD39_RS01960;Name=melA;gbkey=Gene;gene=melA;gene_biotype=protein_coding;locus_tag=AD39_RS01960;old_locus_tag=AD39_4726 NZ_JJLH01000064.1 Protein Homology CDS 122905 124260 . + 0 ID=cds-WP_000988031.1;Parent=gene-AD39_RS01960;Dbxref=GenBank:WP_000988031.1;Name=WP_000988031.1;gbkey=CDS;gene=melA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313128.1;locus_tag=AD39_RS01960;product=alpha-galactosidase;protein_id=WP_000988031.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 124363 125784 . + . ID=gene-AD39_RS01955;Name=melB;gbkey=Gene;gene=melB;gene_biotype=protein_coding;locus_tag=AD39_RS01955;old_locus_tag=AD39_4727 NZ_JJLH01000064.1 Protein Homology CDS 124363 125784 . + 0 ID=cds-WP_000028114.1;Parent=gene-AD39_RS01955;Dbxref=GenBank:WP_000028114.1;Name=WP_000028114.1;Ontology_term=GO:0006814,GO:0008643,GO:0015293,GO:0022857,GO:0016020;gbkey=CDS;gene=melB;go_component=membrane|0016020||IEA;go_function=symporter activity|0015293||IEA,transmembrane transporter activity|0022857||IEA;go_process=sodium ion transport|0006814||IEA,carbohydrate transport|0008643||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418544.2;locus_tag=AD39_RS01955;product=melibiose:sodium transporter MelB;protein_id=WP_000028114.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 125923 126552 . - . ID=gene-AD39_RS01950;Name=yjdF;gbkey=Gene;gene=yjdF;gene_biotype=protein_coding;locus_tag=AD39_RS01950;old_locus_tag=AD39_4728 NZ_JJLH01000064.1 Protein Homology CDS 125923 126552 . - 0 ID=cds-WP_000198754.1;Parent=gene-AD39_RS01950;Dbxref=GenBank:WP_000198754.1;Name=WP_000198754.1;gbkey=CDS;gene=yjdF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313130.1;locus_tag=AD39_RS01950;product=DUF2238 domain-containing protein;protein_id=WP_000198754.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 126675 128321 . - . ID=gene-AD39_RS01945;Name=fumB;gbkey=Gene;gene=fumB;gene_biotype=protein_coding;locus_tag=AD39_RS01945;old_locus_tag=AD39_4729 NZ_JJLH01000064.1 Protein Homology CDS 126675 128321 . - 0 ID=cds-WP_000066681.1;Parent=gene-AD39_RS01945;Dbxref=GenBank:WP_000066681.1;Name=WP_000066681.1;gbkey=CDS;gene=fumB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418546.1;locus_tag=AD39_RS01945;product=class I fumarate hydratase;protein_id=WP_000066681.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 128399 129739 . - . ID=gene-AD39_RS01940;Name=dcuB;gbkey=Gene;gene=dcuB;gene_biotype=protein_coding;locus_tag=AD39_RS01940;old_locus_tag=AD39_4730 NZ_JJLH01000064.1 Protein Homology CDS 128399 129739 . - 0 ID=cds-WP_000899522.1;Parent=gene-AD39_RS01940;Dbxref=GenBank:WP_000899522.1;Name=WP_000899522.1;gbkey=CDS;gene=dcuB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313132.1;locus_tag=AD39_RS01940;product=anaerobic C4-dicarboxylate transporter DcuB;protein_id=WP_000899522.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 130310 131029 . - . ID=gene-AD39_RS01935;Name=dcuR;gbkey=Gene;gene=dcuR;gene_biotype=protein_coding;locus_tag=AD39_RS01935;old_locus_tag=AD39_4731 NZ_JJLH01000064.1 Protein Homology CDS 130310 131029 . - 0 ID=cds-WP_000611288.1;Parent=gene-AD39_RS01935;Dbxref=GenBank:WP_000611288.1;Name=WP_000611288.1;Ontology_term=GO:0000160,GO:0003700;gbkey=CDS;gene=dcuR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=phosphorelay signal transduction system|0000160||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313133.1;locus_tag=AD39_RS01935;product=two-component system response regulator DcuR;protein_id=WP_000611288.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 131026 132657 . - . ID=gene-AD39_RS01930;Name=dcuS;gbkey=Gene;gene=dcuS;gene_biotype=protein_coding;locus_tag=AD39_RS01930;old_locus_tag=AD39_4732 NZ_JJLH01000064.1 Protein Homology CDS 131026 132657 . - 0 ID=cds-WP_001216461.1;Parent=gene-AD39_RS01930;Dbxref=GenBank:WP_001216461.1;Name=WP_001216461.1;gbkey=CDS;gene=dcuS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313134.1;locus_tag=AD39_RS01930;product=sensor histidine kinase;protein_id=WP_001216461.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 132838 133068 . + . ID=gene-AD39_RS01925;Name=yjdI;gbkey=Gene;gene=yjdI;gene_biotype=protein_coding;locus_tag=AD39_RS01925;old_locus_tag=AD39_4734 NZ_JJLH01000064.1 Protein Homology CDS 132838 133068 . + 0 ID=cds-WP_000371700.1;Parent=gene-AD39_RS01925;Dbxref=GenBank:WP_000371700.1;Name=WP_000371700.1;gbkey=CDS;gene=yjdI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313135.1;locus_tag=AD39_RS01925;product=4Fe-4S mono-cluster protein YjdI;protein_id=WP_000371700.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 133080 133352 . + . ID=gene-AD39_RS01920;Name=yjdJ;gbkey=Gene;gene=yjdJ;gene_biotype=protein_coding;locus_tag=AD39_RS01920;old_locus_tag=AD39_4735 NZ_JJLH01000064.1 Protein Homology CDS 133080 133352 . + 0 ID=cds-WP_000405647.1;Parent=gene-AD39_RS01920;Dbxref=GenBank:WP_000405647.1;Name=WP_000405647.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;gene=yjdJ;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313136.1;locus_tag=AD39_RS01920;product=GNAT family N-acetyltransferase;protein_id=WP_000405647.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 133579 133875 . + . ID=gene-AD39_RS01915;Name=ghoS;gbkey=Gene;gene=ghoS;gene_biotype=protein_coding;locus_tag=AD39_RS01915;old_locus_tag=AD39_4736 NZ_JJLH01000064.1 Protein Homology CDS 133579 133875 . + 0 ID=cds-WP_000398619.1;Parent=gene-AD39_RS01915;Dbxref=GenBank:WP_000398619.1;Name=WP_000398619.1;gbkey=CDS;gene=ghoS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313137.1;locus_tag=AD39_RS01915;product=type V toxin-antitoxin system endoribonuclease antitoxin GhoS;protein_id=WP_000398619.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 133903 134076 . + . ID=gene-AD39_RS01910;Name=ghoT;gbkey=Gene;gene=ghoT;gene_biotype=protein_coding;locus_tag=AD39_RS01910;old_locus_tag=AD39_4737 NZ_JJLH01000064.1 Protein Homology CDS 133903 134076 . + 0 ID=cds-WP_001173343.1;Parent=gene-AD39_RS01910;Dbxref=GenBank:WP_001173343.1;Name=WP_001173343.1;gbkey=CDS;gene=ghoT;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588474.1;locus_tag=AD39_RS01910;product=type V toxin-antitoxin system toxin GhoT;protein_id=WP_001173343.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 134195 135712 . - . ID=gene-AD39_RS01905;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=AD39_RS01905;old_locus_tag=AD39_4738 NZ_JJLH01000064.1 Protein Homology CDS 134195 135712 . - 0 ID=cds-WP_001295074.1;Parent=gene-AD39_RS01905;Dbxref=GenBank:WP_001295074.1;Name=WP_001295074.1;Ontology_term=GO:0006430,GO:0004824,GO:0005524,GO:0005737;gbkey=CDS;gene=lysS;go_component=cytoplasm|0005737||IEA;go_function=lysine-tRNA ligase activity|0004824||IEA,ATP binding|0005524||IEA;go_process=lysyl-tRNA aminoacylation|0006430||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001740376.1;locus_tag=AD39_RS01905;product=lysine--tRNA ligase;protein_id=WP_001295074.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 135949 137406 . - . ID=gene-AD39_RS01900;Name=dtpC;gbkey=Gene;gene=dtpC;gene_biotype=protein_coding;locus_tag=AD39_RS01900;old_locus_tag=AD39_4739 NZ_JJLH01000064.1 Protein Homology CDS 135949 137406 . - 0 ID=cds-WP_000856829.1;Parent=gene-AD39_RS01900;Dbxref=GenBank:WP_000856829.1;Name=WP_000856829.1;gbkey=CDS;gene=dtpC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418554.1;locus_tag=AD39_RS01900;product=dipeptide/tripeptide permease DtpC;protein_id=WP_000856829.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 137465 139612 . - . ID=gene-AD39_RS01895;Name=cadA;gbkey=Gene;gene=cadA;gene_biotype=protein_coding;locus_tag=AD39_RS01895;old_locus_tag=AD39_4740 NZ_JJLH01000064.1 Protein Homology CDS 137465 139612 . - 0 ID=cds-WP_001100642.1;Parent=gene-AD39_RS01895;Dbxref=GenBank:WP_001100642.1;Name=WP_001100642.1;gbkey=CDS;gene=cadA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313140.1;locus_tag=AD39_RS01895;product=lysine decarboxylase CadA;protein_id=WP_001100642.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 139692 141026 . - . ID=gene-AD39_RS01890;Name=cadB;gbkey=Gene;gene=cadB;gene_biotype=protein_coding;locus_tag=AD39_RS01890;old_locus_tag=AD39_4741 NZ_JJLH01000064.1 Protein Homology CDS 139692 141026 . - 0 ID=cds-WP_000092909.1;Parent=gene-AD39_RS01890;Dbxref=GenBank:WP_000092909.1;Name=WP_000092909.1;Ontology_term=GO:0043872;gbkey=CDS;gene=cadB;go_function=lysine:cadaverine antiporter activity|0043872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313141.1;locus_tag=AD39_RS01890;product=cadaverine/lysine antiporter;protein_id=WP_000092909.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 141392 142930 . - . ID=gene-AD39_RS01885;Name=cadC;gbkey=Gene;gene=cadC;gene_biotype=protein_coding;locus_tag=AD39_RS01885;old_locus_tag=AD39_4742 NZ_JJLH01000064.1 Protein Homology CDS 141392 142930 . - 0 ID=cds-WP_001187170.1;Parent=gene-AD39_RS01885;Dbxref=GenBank:WP_001187170.1;Name=WP_001187170.1;gbkey=CDS;gene=cadC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313142.1;locus_tag=AD39_RS01885;product=lysine decarboxylation/transport transcriptional activator CadC;protein_id=WP_001187170.1;transl_table=11 NZ_JJLH01000064.1 RefSeq pseudogene 143190 143349 . - . ID=gene-AD39_RS30085;Name=AD39_RS30085;end_range=143349,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30085;partial=true;pseudo=true NZ_JJLH01000064.1 Protein Homology CDS 143190 143349 . - 0 ID=cds-AD39_RS30085;Parent=gene-AD39_RS30085;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=143349,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001218818.1;locus_tag=AD39_RS30085;partial=true;product=tyrosine-type recombinase/integrase;pseudo=true;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 143547 143622 . - . ID=gene-AD39_RS01880;Name=AD39_RS01880;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS01880;old_locus_tag=AD39_4743 NZ_JJLH01000064.1 tRNAscan-SE tRNA 143547 143622 . - . ID=rna-AD39_RS01880;Parent=gene-AD39_RS01880;anticodon=(pos:complement(143587..143589));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS01880;product=tRNA-Phe NZ_JJLH01000064.1 tRNAscan-SE exon 143547 143622 . - . ID=exon-AD39_RS01880-1;Parent=rna-AD39_RS01880;anticodon=(pos:complement(143587..143589));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS01880;product=tRNA-Phe NZ_JJLH01000064.1 RefSeq gene 143729 144304 . - . ID=gene-AD39_RS01875;Name=dicD;gbkey=Gene;gene=dicD;gene_biotype=protein_coding;locus_tag=AD39_RS01875;old_locus_tag=AD39_4744 NZ_JJLH01000064.1 Protein Homology CDS 143729 144304 . - 0 ID=cds-WP_001188520.1;Parent=gene-AD39_RS01875;Dbxref=GenBank:WP_001188520.1;Name=WP_001188520.1;Ontology_term=GO:0003677;gbkey=CDS;gene=dicD;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710000.1;locus_tag=AD39_RS01875;product=transcriptional regulator;protein_id=WP_001188520.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 144341 146038 . - . ID=gene-AD39_RS01870;Name=dsbD;gbkey=Gene;gene=dsbD;gene_biotype=protein_coding;locus_tag=AD39_RS01870;old_locus_tag=AD39_4745 NZ_JJLH01000064.1 Protein Homology CDS 144341 146038 . - 0 ID=cds-WP_000068978.1;Parent=gene-AD39_RS01870;Dbxref=GenBank:WP_000068978.1;Name=WP_000068978.1;gbkey=CDS;gene=dsbD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710001.1;locus_tag=AD39_RS01870;product=protein-disulfide reductase DsbD;protein_id=WP_000068978.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 146014 146352 . - . ID=gene-AD39_RS01865;Name=cutA;gbkey=Gene;gene=cutA;gene_biotype=protein_coding;locus_tag=AD39_RS01865;old_locus_tag=AD39_4746 NZ_JJLH01000064.1 Protein Homology CDS 146014 146352 . - 0 ID=cds-WP_000883400.1;Parent=gene-AD39_RS01865;Dbxref=GenBank:WP_000883400.1;Name=WP_000883400.1;gbkey=CDS;gene=cutA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313145.1;locus_tag=AD39_RS01865;product=divalent cation tolerance protein CutA;protein_id=WP_000883400.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 146468 147769 . - . ID=gene-AD39_RS01860;Name=dcuA;gbkey=Gene;gene=dcuA;gene_biotype=protein_coding;locus_tag=AD39_RS01860;old_locus_tag=AD39_4747 NZ_JJLH01000064.1 Protein Homology CDS 146468 147769 . - 0 ID=cds-WP_000961959.1;Parent=gene-AD39_RS01860;Dbxref=GenBank:WP_000961959.1;Name=WP_000961959.1;gbkey=CDS;gene=dcuA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313146.1;locus_tag=AD39_RS01860;product=anaerobic C4-dicarboxylate transporter DcuA;protein_id=WP_000961959.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 147887 149323 . - . ID=gene-AD39_RS01855;Name=aspA;gbkey=Gene;gene=aspA;gene_biotype=protein_coding;locus_tag=AD39_RS01855;old_locus_tag=AD39_4748 NZ_JJLH01000064.1 Protein Homology CDS 147887 149323 . - 0 ID=cds-WP_000069437.1;Parent=gene-AD39_RS01855;Dbxref=GenBank:WP_000069437.1;Name=WP_000069437.1;Ontology_term=GO:0006520,GO:0008797;gbkey=CDS;gene=aspA;go_function=aspartate ammonia-lyase activity|0008797||IEA;go_process=amino acid metabolic process|0006520||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313147.2;locus_tag=AD39_RS01855;product=aspartate ammonia-lyase;protein_id=WP_000069437.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 149660 150136 . + . ID=gene-AD39_RS01850;Name=fxsA;gbkey=Gene;gene=fxsA;gene_biotype=protein_coding;locus_tag=AD39_RS01850;old_locus_tag=AD39_4749 NZ_JJLH01000064.1 Protein Homology CDS 149660 150136 . + 0 ID=cds-WP_001267448.1;Parent=gene-AD39_RS01850;Dbxref=GenBank:WP_001267448.1;Name=WP_001267448.1;Ontology_term=GO:0005886;gbkey=CDS;gene=fxsA;go_component=plasma membrane|0005886||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418564.2;locus_tag=AD39_RS01850;product=FxsA family protein;protein_id=WP_001267448.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 150152 151408 . - . ID=gene-AD39_RS01845;Name=yjeH;gbkey=Gene;gene=yjeH;gene_biotype=protein_coding;locus_tag=AD39_RS01845;old_locus_tag=AD39_4750 NZ_JJLH01000064.1 Protein Homology CDS 150152 151408 . - 0 ID=cds-WP_000015837.1;Parent=gene-AD39_RS01845;Dbxref=GenBank:WP_000015837.1;Name=WP_000015837.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yjeH;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418565.1;locus_tag=AD39_RS01845;product=L-methionine/branched-chain amino acid transporter;protein_id=WP_000015837.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 151684 151977 . + . ID=gene-AD39_RS01840;Name=groS;gbkey=Gene;gene=groS;gene_biotype=protein_coding;locus_tag=AD39_RS01840;old_locus_tag=AD39_4751 NZ_JJLH01000064.1 Protein Homology CDS 151684 151977 . + 0 ID=cds-WP_001026276.1;Parent=gene-AD39_RS01840;Dbxref=GenBank:WP_001026276.1;Name=WP_001026276.1;Ontology_term=GO:0005524,GO:0140662;gbkey=CDS;gene=groS;go_function=ATP binding|0005524||IEA,ATP-dependent protein folding chaperone|0140662||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000027827.1;locus_tag=AD39_RS01840;product=co-chaperone GroES;protein_id=WP_001026276.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 152021 153667 . + . ID=gene-AD39_RS01835;Name=groL;gbkey=Gene;gene=groL;gene_biotype=protein_coding;locus_tag=AD39_RS01835;old_locus_tag=AD39_4752 NZ_JJLH01000064.1 Protein Homology CDS 152021 153667 . + 0 ID=cds-WP_000729117.1;Parent=gene-AD39_RS01835;Dbxref=GenBank:WP_000729117.1;Name=WP_000729117.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds;Ontology_term=GO:0042026,GO:0140662;gbkey=CDS;gene=groL;go_function=ATP-dependent protein folding chaperone|0140662||IEA;go_process=protein refolding|0042026||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005120975.1;locus_tag=AD39_RS01835;product=chaperonin GroEL;protein_id=WP_000729117.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 153805 154158 . + . ID=gene-AD39_RS01830;Name=yjeI;gbkey=Gene;gene=yjeI;gene_biotype=protein_coding;locus_tag=AD39_RS01830;old_locus_tag=AD39_4753 NZ_JJLH01000064.1 Protein Homology CDS 153805 154158 . + 0 ID=cds-WP_000558209.1;Parent=gene-AD39_RS01830;Dbxref=GenBank:WP_000558209.1;Name=WP_000558209.1;gbkey=CDS;gene=yjeI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418568.2;locus_tag=AD39_RS01830;product=DUF4156 domain-containing protein;protein_id=WP_000558209.1;transl_table=11 NZ_JJLH01000064.1 RefSeq gene 154411 155391 . + . ID=gene-AD39_RS01825;Name=AD39_RS01825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01825;old_locus_tag=AD39_4754 NZ_JJLH01000064.1 Protein Homology CDS 154411 155391 . + 0 ID=cds-WP_000399589.1;Parent=gene-AD39_RS01825;Dbxref=GenBank:WP_000399589.1;Name=WP_000399589.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904434.1;locus_tag=AD39_RS01825;product=IS110-like element IS621 family transposase;protein_id=WP_000399589.1;transl_table=11 ##sequence-region NZ_JJLH01000065.1 1 70854 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000065.1 RefSeq region 1 70854 . + . ID=NZ_JJLH01000065.1:1..70854;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000065.1 RefSeq gene 1 1031 . - . ID=gene-AD39_RS01820;Name=rsgA;gbkey=Gene;gene=rsgA;gene_biotype=protein_coding;locus_tag=AD39_RS01820;old_locus_tag=AD39_4755;partial=true;start_range=.,1 NZ_JJLH01000065.1 Protein Homology CDS 1 1031 . - 0 ID=cds-WP_032287661.1;Parent=gene-AD39_RS01820;Dbxref=GenBank:WP_032287661.1;Name=WP_032287661.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=rsgA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313167.2;locus_tag=AD39_RS01820;partial=true;product=small ribosomal subunit biogenesis GTPase RsgA;protein_id=WP_032287661.1;start_range=.,1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 1126 1671 . + . ID=gene-AD39_RS01815;Name=orn;gbkey=Gene;gene=orn;gene_biotype=protein_coding;locus_tag=AD39_RS01815;old_locus_tag=AD39_4756 NZ_JJLH01000065.1 Protein Homology CDS 1126 1671 . + 0 ID=cds-WP_001295188.1;Parent=gene-AD39_RS01815;Dbxref=GenBank:WP_001295188.1;Name=WP_001295188.1;Ontology_term=GO:0000175,GO:0003676;gbkey=CDS;gene=orn;go_function=3'-5'-RNA exonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882950.1;locus_tag=AD39_RS01815;product=oligoribonuclease;protein_id=WP_001295188.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 1882 1957 . + . ID=gene-AD39_RS01810;Name=AD39_RS01810;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS01810;old_locus_tag=AD39_4757 NZ_JJLH01000065.1 tRNAscan-SE tRNA 1882 1957 . + . ID=rna-AD39_RS01810;Parent=gene-AD39_RS01810;anticodon=(pos:1915..1917);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS01810;product=tRNA-Gly NZ_JJLH01000065.1 tRNAscan-SE exon 1882 1957 . + . ID=exon-AD39_RS01810-1;Parent=rna-AD39_RS01810;anticodon=(pos:1915..1917);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS01810;product=tRNA-Gly NZ_JJLH01000065.1 RefSeq gene 1994 2069 . + . ID=gene-AD39_RS01805;Name=AD39_RS01805;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS01805;old_locus_tag=AD39_4758 NZ_JJLH01000065.1 tRNAscan-SE tRNA 1994 2069 . + . ID=rna-AD39_RS01805;Parent=gene-AD39_RS01805;anticodon=(pos:2027..2029);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS01805;product=tRNA-Gly NZ_JJLH01000065.1 tRNAscan-SE exon 1994 2069 . + . ID=exon-AD39_RS01805-1;Parent=rna-AD39_RS01805;anticodon=(pos:2027..2029);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS01805;product=tRNA-Gly NZ_JJLH01000065.1 RefSeq gene 2105 2180 . + . ID=gene-AD39_RS01800;Name=AD39_RS01800;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS01800;old_locus_tag=AD39_4759 NZ_JJLH01000065.1 tRNAscan-SE tRNA 2105 2180 . + . ID=rna-AD39_RS01800;Parent=gene-AD39_RS01800;anticodon=(pos:2138..2140);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS01800;product=tRNA-Gly NZ_JJLH01000065.1 tRNAscan-SE exon 2105 2180 . + . ID=exon-AD39_RS01800-1;Parent=rna-AD39_RS01800;anticodon=(pos:2138..2140);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS01800;product=tRNA-Gly NZ_JJLH01000065.1 RefSeq gene 2414 2467 . + . ID=gene-AD39_RS29305;Name=AD39_RS29305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29305 NZ_JJLH01000065.1 Protein Homology CDS 2414 2467 . + 0 ID=cds-WP_010723271.1;Parent=gene-AD39_RS29305;Dbxref=GenBank:WP_010723271.1;Name=WP_010723271.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791261.1;locus_tag=AD39_RS29305;product=hypothetical protein;protein_id=WP_010723271.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 2450 3589 . - . ID=gene-AD39_RS01795;Name=queG;gbkey=Gene;gene=queG;gene_biotype=protein_coding;locus_tag=AD39_RS01795;old_locus_tag=AD39_4760 NZ_JJLH01000065.1 Protein Homology CDS 2450 3589 . - 0 ID=cds-WP_001294219.1;Parent=gene-AD39_RS01795;Dbxref=GenBank:WP_001294219.1;Name=WP_001294219.1;Ontology_term=GO:0008033,GO:0008616,GO:0051539,GO:0052693;gbkey=CDS;gene=queG;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,epoxyqueuosine reductase activity|0052693||IEA;go_process=tRNA processing|0008033||IEA,queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418587.1;locus_tag=AD39_RS01795;product=tRNA epoxyqueuosine(34) reductase QueG;protein_id=WP_001294219.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 3588 5135 . + . ID=gene-AD39_RS01790;Name=nnr;gbkey=Gene;gene=nnr;gene_biotype=protein_coding;locus_tag=AD39_RS01790;old_locus_tag=AD39_4761 NZ_JJLH01000065.1 Protein Homology CDS 3588 5135 . + 0 ID=cds-WP_077756021.1;Parent=gene-AD39_RS01790;Dbxref=GenBank:WP_077756021.1;Name=WP_077756021.1;Ontology_term=GO:0052855;gbkey=CDS;gene=nnr;go_function=ADP-dependent NAD(P)H-hydrate dehydratase activity|0052855||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418588.1;locus_tag=AD39_RS01790;product=bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase;protein_id=WP_077756021.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 5107 5568 . + . ID=gene-AD39_RS01785;Name=tsaE;gbkey=Gene;gene=tsaE;gene_biotype=protein_coding;locus_tag=AD39_RS01785;old_locus_tag=AD39_4762 NZ_JJLH01000065.1 Protein Homology CDS 5107 5568 . + 0 ID=cds-WP_000981977.1;Parent=gene-AD39_RS01785;Dbxref=GenBank:WP_000981977.1;Name=WP_000981977.1;Ontology_term=GO:0002949;gbkey=CDS;gene=tsaE;go_process=tRNA threonylcarbamoyladenosine modification|0002949||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313171.1;locus_tag=AD39_RS01785;product=tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;protein_id=WP_000981977.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 5587 6924 . + . ID=gene-AD39_RS01780;Name=amiB;gbkey=Gene;gene=amiB;gene_biotype=protein_coding;locus_tag=AD39_RS01780;old_locus_tag=AD39_4763 NZ_JJLH01000065.1 Protein Homology CDS 5587 6924 . + 0 ID=cds-WP_000990321.1;Parent=gene-AD39_RS01780;Dbxref=GenBank:WP_000990321.1;Name=WP_000990321.1;Ontology_term=GO:0009253,GO:0008745;gbkey=CDS;gene=amiB;go_function=N-acetylmuramoyl-L-alanine amidase activity|0008745||IEA;go_process=peptidoglycan catabolic process|0009253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418590.1;locus_tag=AD39_RS01780;product=N-acetylmuramoyl-L-alanine amidase AmiB;protein_id=WP_000990321.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 6934 8781 . + . ID=gene-AD39_RS01775;Name=mutL;gbkey=Gene;gene=mutL;gene_biotype=protein_coding;locus_tag=AD39_RS01775;old_locus_tag=AD39_4764 NZ_JJLH01000065.1 Protein Homology CDS 6934 8781 . + 0 ID=cds-WP_001542593.1;Parent=gene-AD39_RS01775;Dbxref=GenBank:WP_001542593.1;Name=WP_001542593.1;Ontology_term=GO:0006298,GO:0005524,GO:0016887,GO:0030983,GO:0032300;gbkey=CDS;gene=mutL;go_component=mismatch repair complex|0032300||IEA;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,mismatched DNA binding|0030983||IEA;go_process=mismatch repair|0006298||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710035.2;locus_tag=AD39_RS01775;product=DNA mismatch repair endonuclease MutL;protein_id=WP_001542593.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 8774 9724 . + . ID=gene-AD39_RS01770;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=AD39_RS01770;old_locus_tag=AD39_4765 NZ_JJLH01000065.1 Protein Homology CDS 8774 9724 . + 0 ID=cds-WP_001280345.1;Parent=gene-AD39_RS01770;Dbxref=GenBank:WP_001280345.1;Name=WP_001280345.1;Ontology_term=GO:0006400,GO:0052381,GO:0005737;gbkey=CDS;gene=miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA dimethylallyltransferase activity|0052381||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418592.1;locus_tag=AD39_RS01770;product=tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA;protein_id=WP_001280345.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 9810 10118 . + . ID=gene-AD39_RS01765;Name=hfq;gbkey=Gene;gene=hfq;gene_biotype=protein_coding;locus_tag=AD39_RS01765;old_locus_tag=AD39_4766 NZ_JJLH01000065.1 Protein Homology CDS 9810 10118 . + 0 ID=cds-WP_001051883.1;Parent=gene-AD39_RS01765;Dbxref=GenBank:WP_001051883.1;Name=WP_001051883.1;Ontology_term=GO:0006355,GO:0003723;gbkey=CDS;gene=hfq;go_function=RNA binding|0003723||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313175.1;locus_tag=AD39_RS01765;product=RNA chaperone Hfq;protein_id=WP_001051883.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 10194 11474 . + . ID=gene-AD39_RS01760;Name=hflX;gbkey=Gene;gene=hflX;gene_biotype=protein_coding;locus_tag=AD39_RS01760;old_locus_tag=AD39_4767 NZ_JJLH01000065.1 Protein Homology CDS 10194 11474 . + 0 ID=cds-WP_000460360.1;Parent=gene-AD39_RS01760;Dbxref=GenBank:WP_000460360.1;Name=WP_000460360.1;Ontology_term=GO:0005525;gbkey=CDS;gene=hflX;go_function=GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313176.1;locus_tag=AD39_RS01760;product=ribosome rescue GTPase HflX;protein_id=WP_000460360.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 11560 12819 . + . ID=gene-AD39_RS01755;Name=hflK;gbkey=Gene;gene=hflK;gene_biotype=protein_coding;locus_tag=AD39_RS01755;old_locus_tag=AD39_4768 NZ_JJLH01000065.1 Protein Homology CDS 11560 12819 . + 0 ID=cds-WP_000312488.1;Parent=gene-AD39_RS01755;Dbxref=GenBank:WP_000312488.1;Name=WP_000312488.1;Ontology_term=GO:0016020;gbkey=CDS;gene=hflK;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313177.1;locus_tag=AD39_RS01755;product=FtsH protease activity modulator HflK;protein_id=WP_000312488.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 12822 13826 . + . ID=gene-AD39_RS01750;Name=hflC;gbkey=Gene;gene=hflC;gene_biotype=protein_coding;locus_tag=AD39_RS01750;old_locus_tag=AD39_4769 NZ_JJLH01000065.1 Protein Homology CDS 12822 13826 . + 0 ID=cds-WP_001232412.1;Parent=gene-AD39_RS01750;Dbxref=GenBank:WP_001232412.1;Name=WP_001232412.1;gbkey=CDS;gene=hflC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313178.1;locus_tag=AD39_RS01750;product=protease modulator HflC;protein_id=WP_001232412.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 13908 14105 . + . ID=gene-AD39_RS0125700;Name=yjeT;gbkey=Gene;gene=yjeT;gene_biotype=protein_coding;locus_tag=AD39_RS0125700;old_locus_tag=AD39_4770 NZ_JJLH01000065.1 Protein Homology CDS 13908 14105 . + 0 ID=cds-WP_001089295.1;Parent=gene-AD39_RS0125700;Dbxref=GenBank:WP_001089295.1;Name=WP_001089295.1;gbkey=CDS;gene=yjeT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313179.1;locus_tag=AD39_RS0125700;product=DUF2065 domain-containing protein;protein_id=WP_001089295.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 14209 15507 . + . ID=gene-AD39_RS01745;Name=purA;gbkey=Gene;gene=purA;gene_biotype=protein_coding;locus_tag=AD39_RS01745;old_locus_tag=AD39_4771 NZ_JJLH01000065.1 Protein Homology CDS 14209 15507 . + 0 ID=cds-WP_000527955.1;Parent=gene-AD39_RS01745;Dbxref=GenBank:WP_000527955.1;Name=WP_000527955.1;Ontology_term=GO:0009152,GO:0004019;gbkey=CDS;gene=purA;go_function=adenylosuccinate synthase activity|0004019||IEA;go_process=purine ribonucleotide biosynthetic process|0009152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_019842885.1;locus_tag=AD39_RS01745;product=adenylosuccinate synthase;protein_id=WP_000527955.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 15712 16137 . + . ID=gene-AD39_RS01740;Name=nsrR;gbkey=Gene;gene=nsrR;gene_biotype=protein_coding;locus_tag=AD39_RS01740;old_locus_tag=AD39_4772 NZ_JJLH01000065.1 Protein Homology CDS 15712 16137 . + 0 ID=cds-WP_001177639.1;Parent=gene-AD39_RS01740;Dbxref=GenBank:WP_001177639.1;Name=WP_001177639.1;gbkey=CDS;gene=nsrR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134424.1;locus_tag=AD39_RS01740;product=nitric oxide-sensing transcriptional repressor NsrR;protein_id=WP_001177639.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 16176 18617 . + . ID=gene-AD39_RS01735;Name=rnr;gbkey=Gene;gene=rnr;gene_biotype=protein_coding;locus_tag=AD39_RS01735;old_locus_tag=AD39_4773 NZ_JJLH01000065.1 Protein Homology CDS 16176 18617 . + 0 ID=cds-WP_000076316.1;Parent=gene-AD39_RS01735;Dbxref=GenBank:WP_000076316.1;Name=WP_000076316.1;Ontology_term=GO:0016070,GO:0004540;gbkey=CDS;gene=rnr;go_function=RNA nuclease activity|0004540||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418600.4;locus_tag=AD39_RS01735;product=ribonuclease R;protein_id=WP_000076316.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 18797 19528 . + . ID=gene-AD39_RS01730;Name=rlmB;gbkey=Gene;gene=rlmB;gene_biotype=protein_coding;locus_tag=AD39_RS01730;old_locus_tag=AD39_4774 NZ_JJLH01000065.1 Protein Homology CDS 18797 19528 . + 0 ID=cds-WP_001293282.1;Parent=gene-AD39_RS01730;Dbxref=GenBank:WP_001293282.1;Name=WP_001293282.1;Ontology_term=GO:0006396,GO:0003723,GO:0008173;gbkey=CDS;gene=rlmB;go_function=RNA binding|0003723||IEA,RNA methyltransferase activity|0008173||IEA;go_process=RNA processing|0006396||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313183.1;locus_tag=AD39_RS01730;product=23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;protein_id=WP_001293282.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 19655 20056 . + . ID=gene-AD39_RS01725;Name=yjfI;gbkey=Gene;gene=yjfI;gene_biotype=protein_coding;locus_tag=AD39_RS01725;old_locus_tag=AD39_4775 NZ_JJLH01000065.1 Protein Homology CDS 19655 20056 . + 0 ID=cds-WP_032283665.1;Parent=gene-AD39_RS01725;Dbxref=GenBank:WP_032283665.1;Name=WP_032283665.1;gbkey=CDS;gene=yjfI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313184.1;locus_tag=AD39_RS01725;product=YjfI family protein;protein_id=WP_032283665.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 20075 20773 . + . ID=gene-AD39_RS01720;Name=yjfJ;gbkey=Gene;gene=yjfJ;gene_biotype=protein_coding;locus_tag=AD39_RS01720;old_locus_tag=AD39_4776 NZ_JJLH01000065.1 Protein Homology CDS 20075 20773 . + 0 ID=cds-WP_000511955.1;Parent=gene-AD39_RS01720;Dbxref=GenBank:WP_000511955.1;Name=WP_000511955.1;gbkey=CDS;gene=yjfJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418603.1;locus_tag=AD39_RS01720;product=PspA/IM30 family protein;protein_id=WP_000511955.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 20824 21483 . + . ID=gene-AD39_RS01715;Name=yjfK;gbkey=Gene;gene=yjfK;gene_biotype=protein_coding;locus_tag=AD39_RS01715;old_locus_tag=AD39_4777 NZ_JJLH01000065.1 Protein Homology CDS 20824 21483 . + 0 ID=cds-WP_000012553.1;Parent=gene-AD39_RS01715;Dbxref=GenBank:WP_000012553.1;Name=WP_000012553.1;gbkey=CDS;gene=yjfK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418604.1;locus_tag=AD39_RS01715;product=YjfK family protein;protein_id=WP_000012553.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 21501 21899 . + . ID=gene-AD39_RS01710;Name=yjfL;gbkey=Gene;gene=yjfL;gene_biotype=protein_coding;locus_tag=AD39_RS01710;old_locus_tag=AD39_4778 NZ_JJLH01000065.1 Protein Homology CDS 21501 21899 . + 0 ID=cds-WP_000547760.1;Parent=gene-AD39_RS01710;Dbxref=GenBank:WP_000547760.1;Name=WP_000547760.1;gbkey=CDS;gene=yjfL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313187.1;locus_tag=AD39_RS01710;product=DUF350 domain-containing protein;protein_id=WP_000547760.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 21909 22547 . + . ID=gene-AD39_RS01705;Name=yjfM;gbkey=Gene;gene=yjfM;gene_biotype=protein_coding;locus_tag=AD39_RS01705;old_locus_tag=AD39_4779 NZ_JJLH01000065.1 Protein Homology CDS 21909 22547 . + 0 ID=cds-WP_000101649.1;Parent=gene-AD39_RS01705;Dbxref=GenBank:WP_000101649.1;Name=WP_000101649.1;gbkey=CDS;gene=yjfM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313188.1;locus_tag=AD39_RS01705;product=DUF1190 domain-containing protein;protein_id=WP_000101649.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 22550 23713 . + . ID=gene-AD39_RS01700;Name=yjfC;gbkey=Gene;gene=yjfC;gene_biotype=protein_coding;locus_tag=AD39_RS01700;old_locus_tag=AD39_4780 NZ_JJLH01000065.1 Protein Homology CDS 22550 23713 . + 0 ID=cds-WP_000943987.1;Parent=gene-AD39_RS01700;Dbxref=GenBank:WP_000943987.1;Name=WP_000943987.1;Ontology_term=GO:0005524,GO:0016874,GO:0046872;gbkey=CDS;gene=yjfC;go_function=ATP binding|0005524||IEA,ligase activity|0016874||IEA,metal ion binding|0046872||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710049.2;locus_tag=AD39_RS01700;product=glutathionylspermidine synthase family protein;protein_id=WP_000943987.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 23797 25422 . + . ID=gene-AD39_RS01695;Name=aidB;gbkey=Gene;gene=aidB;gene_biotype=protein_coding;locus_tag=AD39_RS01695;old_locus_tag=AD39_4781 NZ_JJLH01000065.1 Protein Homology CDS 23797 25422 . + 0 ID=cds-WP_001299244.1;Parent=gene-AD39_RS01695;Dbxref=GenBank:WP_001299244.1;Name=WP_001299244.1;Ontology_term=GO:0003995;gbkey=CDS;gene=aidB;go_function=acyl-CoA dehydrogenase activity|0003995||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418608.6;locus_tag=AD39_RS01695;product=isovaleryl-CoA dehydrogenase;protein_id=WP_001299244.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 25539 25814 . - . ID=gene-AD39_RS01690;Name=yjfN;gbkey=Gene;gene=yjfN;gene_biotype=protein_coding;locus_tag=AD39_RS01690;old_locus_tag=AD39_4782 NZ_JJLH01000065.1 Protein Homology CDS 25539 25814 . - 0 ID=cds-WP_000811566.1;Parent=gene-AD39_RS01690;Dbxref=GenBank:WP_000811566.1;Name=WP_000811566.1;gbkey=CDS;gene=yjfN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418609.4;locus_tag=AD39_RS01690;product=DUF1471 family protease activator YjfN;protein_id=WP_000811566.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 25963 26292 . - . ID=gene-AD39_RS01685;Name=bsmA;gbkey=Gene;gene=bsmA;gene_biotype=protein_coding;locus_tag=AD39_RS01685;old_locus_tag=AD39_4783 NZ_JJLH01000065.1 Protein Homology CDS 25963 26292 . - 0 ID=cds-WP_000254642.1;Parent=gene-AD39_RS01685;Dbxref=GenBank:WP_000254642.1;Name=WP_000254642.1;gbkey=CDS;gene=bsmA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313192.2;locus_tag=AD39_RS01685;product=biofilm peroxide resistance protein BsmA;protein_id=WP_000254642.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 26474 27223 . + . ID=gene-AD39_RS01680;Name=yjfP;gbkey=Gene;gene=yjfP;gene_biotype=protein_coding;locus_tag=AD39_RS01680;old_locus_tag=AD39_4784 NZ_JJLH01000065.1 Protein Homology CDS 26474 27223 . + 0 ID=cds-WP_001402798.1;Parent=gene-AD39_RS01680;Dbxref=GenBank:WP_001402798.1;Name=WP_001402798.1;Ontology_term=GO:0006508,GO:0008236;gbkey=CDS;gene=yjfP;go_function=serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418611.1;locus_tag=AD39_RS01680;product=esterase;protein_id=WP_001402798.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 27220 27975 . - . ID=gene-AD39_RS01675;Name=ulaR;gbkey=Gene;gene=ulaR;gene_biotype=protein_coding;locus_tag=AD39_RS01675;old_locus_tag=AD39_4785 NZ_JJLH01000065.1 Protein Homology CDS 27220 27975 . - 0 ID=cds-WP_000133631.1;Parent=gene-AD39_RS01675;Dbxref=GenBank:WP_000133631.1;Name=WP_000133631.1;Ontology_term=GO:0006355,GO:0003700;gbkey=CDS;gene=ulaR;go_function=DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313194.1;locus_tag=AD39_RS01675;product=HTH-type transcriptional regulator UlaR;protein_id=WP_000133631.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 28083 29147 . - . ID=gene-AD39_RS01670;Name=ulaG;gbkey=Gene;gene=ulaG;gene_biotype=protein_coding;locus_tag=AD39_RS01670;old_locus_tag=AD39_4786 NZ_JJLH01000065.1 Protein Homology CDS 28083 29147 . - 0 ID=cds-WP_001295191.1;Parent=gene-AD39_RS01670;Dbxref=GenBank:WP_001295191.1;Name=WP_001295191.1;Ontology_term=GO:0019854,GO:0030145,GO:0035460;gbkey=CDS;gene=ulaG;go_function=manganese ion binding|0030145||IEA,L-ascorbate 6-phosphate lactonase activity|0035460||IEA;go_process=L-ascorbic acid catabolic process|0019854||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003856017.1;locus_tag=AD39_RS01670;product=L-ascorbate 6-phosphate lactonase;protein_id=WP_001295191.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 29502 30899 . + . ID=gene-AD39_RS01665;Name=ulaA;gbkey=Gene;gene=ulaA;gene_biotype=protein_coding;locus_tag=AD39_RS01665;old_locus_tag=AD39_4787 NZ_JJLH01000065.1 Protein Homology CDS 29502 30899 . + 0 ID=cds-WP_001300695.1;Parent=gene-AD39_RS01665;Dbxref=GenBank:WP_001300695.1;Name=WP_001300695.1;gbkey=CDS;gene=ulaA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418614.4;locus_tag=AD39_RS01665;product=PTS ascorbate transporter subunit IIC;protein_id=WP_001300695.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 30915 31220 . + . ID=gene-AD39_RS01660;Name=ulaB;gbkey=Gene;gene=ulaB;gene_biotype=protein_coding;locus_tag=AD39_RS01660;old_locus_tag=AD39_4788 NZ_JJLH01000065.1 Protein Homology CDS 30915 31220 . + 0 ID=cds-WP_000218360.1;Parent=gene-AD39_RS01660;Dbxref=GenBank:WP_000218360.1;Name=WP_000218360.1;gbkey=CDS;gene=ulaB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710059.2;locus_tag=AD39_RS01660;product=PTS ascorbate transporter subunit IIB;protein_id=WP_000218360.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 31230 31694 . + . ID=gene-AD39_RS01655;Name=ulaC;gbkey=Gene;gene=ulaC;gene_biotype=protein_coding;locus_tag=AD39_RS01655;old_locus_tag=AD39_4789 NZ_JJLH01000065.1 Protein Homology CDS 31230 31694 . + 0 ID=cds-WP_000776505.1;Parent=gene-AD39_RS01655;Dbxref=GenBank:WP_000776505.1;Name=WP_000776505.1;gbkey=CDS;gene=ulaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710060.1;locus_tag=AD39_RS01655;product=PTS ascorbate transporter subunit IIA;protein_id=WP_000776505.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 31708 32358 . + . ID=gene-AD39_RS01650;Name=ulaD;gbkey=Gene;gene=ulaD;gene_biotype=protein_coding;locus_tag=AD39_RS01650;old_locus_tag=AD39_4790 NZ_JJLH01000065.1 Protein Homology CDS 31708 32358 . + 0 ID=cds-WP_000056760.1;Parent=gene-AD39_RS01650;Dbxref=GenBank:WP_000056760.1;Name=WP_000056760.1;gbkey=CDS;gene=ulaD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313199.1;locus_tag=AD39_RS01650;product=3-keto-L-gulonate-6-phosphate decarboxylase UlaD;protein_id=WP_000056760.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 32368 33222 . + . ID=gene-AD39_RS01645;Name=ulaE;gbkey=Gene;gene=ulaE;gene_biotype=protein_coding;locus_tag=AD39_RS01645;old_locus_tag=AD39_4791 NZ_JJLH01000065.1 Protein Homology CDS 32368 33222 . + 0 ID=cds-WP_000949540.1;Parent=gene-AD39_RS01645;Dbxref=GenBank:WP_000949540.1;Name=WP_000949540.1;gbkey=CDS;gene=ulaE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313200.1;locus_tag=AD39_RS01645;product=L-ribulose-5-phosphate 3-epimerase UlaE;protein_id=WP_000949540.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 33222 33908 . + . ID=gene-AD39_RS01640;Name=ulaF;gbkey=Gene;gene=ulaF;gene_biotype=protein_coding;locus_tag=AD39_RS01640;old_locus_tag=AD39_4792 NZ_JJLH01000065.1 Protein Homology CDS 33222 33908 . + 0 ID=cds-WP_000916039.1;Parent=gene-AD39_RS01640;Dbxref=GenBank:WP_000916039.1;Name=WP_000916039.1;gbkey=CDS;gene=ulaF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313201.1;locus_tag=AD39_RS01640;product=L-ribulose-5-phosphate 4-epimerase UlaF;protein_id=WP_000916039.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 34003 34554 . + . ID=gene-AD39_RS01635;Name=AD39_RS01635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01635;old_locus_tag=AD39_4793 NZ_JJLH01000065.1 Protein Homology CDS 34003 34554 . + 0 ID=cds-WP_000985137.1;Parent=gene-AD39_RS01635;Dbxref=GenBank:WP_000985137.1;Name=WP_000985137.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000996729.1;locus_tag=AD39_RS01635;product=YagU family protein;protein_id=WP_000985137.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 34629 34904 . - . ID=gene-AD39_RS01630;Name=yjfY;gbkey=Gene;gene=yjfY;gene_biotype=protein_coding;locus_tag=AD39_RS01630;old_locus_tag=AD39_4794 NZ_JJLH01000065.1 Protein Homology CDS 34629 34904 . - 0 ID=cds-WP_000492914.1;Parent=gene-AD39_RS01630;Dbxref=GenBank:WP_000492914.1;Name=WP_000492914.1;gbkey=CDS;gene=yjfY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313202.1;locus_tag=AD39_RS01630;product=DUF1471 family protein YjfY;protein_id=WP_000492914.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 35231 35626 . + . ID=gene-AD39_RS01625;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=AD39_RS01625;old_locus_tag=AD39_4795 NZ_JJLH01000065.1 Protein Homology CDS 35231 35626 . + 0 ID=cds-WP_001216676.1;Parent=gene-AD39_RS01625;Dbxref=GenBank:WP_001216676.1;Name=WP_001216676.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsF;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020456251.1;locus_tag=AD39_RS01625;product=30S ribosomal protein S6;protein_id=WP_001216676.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 35633 35947 . + . ID=gene-AD39_RS0125710;Name=priB;gbkey=Gene;gene=priB;gene_biotype=protein_coding;locus_tag=AD39_RS0125710 NZ_JJLH01000065.1 Protein Homology CDS 35633 35947 . + 0 ID=cds-WP_001296681.1;Parent=gene-AD39_RS0125710;Dbxref=GenBank:WP_001296681.1;Name=WP_001296681.1;Ontology_term=GO:0006260,GO:0003697,GO:0030894;gbkey=CDS;gene=priB;go_component=replisome|0030894||IEA;go_function=single-stranded DNA binding|0003697||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313204.1;locus_tag=AD39_RS0125710;product=primosomal replication protein N;protein_id=WP_001296681.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 35952 36179 . + . ID=gene-AD39_RS01620;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=AD39_RS01620;old_locus_tag=AD39_4796 NZ_JJLH01000065.1 Protein Homology CDS 35952 36179 . + 0 ID=cds-WP_000135199.1;Parent=gene-AD39_RS01620;Dbxref=GenBank:WP_000135199.1;Name=WP_000135199.1;Ontology_term=GO:0006412,GO:0003735,GO:0000314,GO:0022627;gbkey=CDS;gene=rpsR;go_component=organellar small ribosomal subunit|0000314||IEA,cytosolic small ribosomal subunit|0022627||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012986941.1;locus_tag=AD39_RS01620;product=30S ribosomal protein S18;protein_id=WP_000135199.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 36221 36670 . + . ID=gene-AD39_RS01615;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=AD39_RS01615;old_locus_tag=AD39_4797 NZ_JJLH01000065.1 Protein Homology CDS 36221 36670 . + 0 ID=cds-WP_001196062.1;Parent=gene-AD39_RS01615;Dbxref=GenBank:WP_001196062.1;Name=WP_001196062.1;Ontology_term=GO:0006412,GO:0003735,GO:0005840;gbkey=CDS;gene=rplI;go_component=ribosome|0005840||IEA;go_function=structural constituent of ribosome|0003735||IEA;go_process=translation|0006412||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005134442.1;locus_tag=AD39_RS01615;product=50S ribosomal protein L9;protein_id=WP_001196062.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 36741 37535 . - . ID=gene-AD39_RS01610;Name=yjfZ;gbkey=Gene;gene=yjfZ;gene_biotype=protein_coding;locus_tag=AD39_RS01610;old_locus_tag=AD39_4798 NZ_JJLH01000065.1 Protein Homology CDS 36741 37535 . - 0 ID=cds-WP_001350063.1;Parent=gene-AD39_RS01610;Dbxref=GenBank:WP_001350063.1;Name=WP_001350063.1;gbkey=CDS;gene=yjfZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418625.1;locus_tag=AD39_RS01610;product=DUF2686 family protein;protein_id=WP_001350063.1;transl_table=11 NZ_JJLH01000065.1 RefSeq pseudogene 37807 38121 . + . ID=gene-AD39_RS29530;Name=AD39_RS29530;end_range=38121,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29530;partial=true;pseudo=true;start_range=.,37807 NZ_JJLH01000065.1 Protein Homology CDS 37807 38121 . + 0 ID=cds-AD39_RS29530;Parent=gene-AD39_RS29530;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=38121,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709992.3;locus_tag=AD39_RS29530;partial=true;product=TetR/AcrR family transcriptional regulator;pseudo=true;start_range=.,37807;transl_table=11 NZ_JJLH01000065.1 RefSeq pseudogene 38161 38588 . - . ID=gene-AD39_RS29880;Name=tnpA;gbkey=Gene;gene=tnpA;gene_biotype=pseudogene;locus_tag=AD39_RS29880;old_locus_tag=AD39_4799;partial=true;pseudo=true;start_range=.,38161 NZ_JJLH01000065.1 Protein Homology CDS 38161 38588 . - 0 ID=cds-AD39_RS29880;Parent=gene-AD39_RS29880;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0004803;gbkey=CDS;gene=tnpA;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313209.1;locus_tag=AD39_RS29880;partial=true;product=IS200/IS605 family transposase;pseudo=true;start_range=.,38161;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 38596 39804 . + . ID=gene-AD39_RS01600;Name=insQ;gbkey=Gene;gene=insQ;gene_biotype=protein_coding;locus_tag=AD39_RS01600;old_locus_tag=AD39_4800 NZ_JJLH01000065.1 Protein Homology CDS 38596 39804 . + 0 ID=cds-WP_071998894.1;Parent=gene-AD39_RS01600;Dbxref=GenBank:WP_071998894.1;Name=WP_071998894.1;Ontology_term=GO:0006310,GO:0032196,GO:0003677,GO:0004519,GO:0046872;gbkey=CDS;gene=insQ;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA,metal ion binding|0046872||IEA;go_process=DNA recombination|0006310||IEA,transposition|0032196||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415949.3;locus_tag=AD39_RS01600;product=RNA-guided endonuclease InsQ/TnpB family protein;protein_id=WP_071998894.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 39844 41058 . - . ID=gene-AD39_RS01595;Name=ydcO;gbkey=Gene;gene=ydcO;gene_biotype=protein_coding;locus_tag=AD39_RS01595;old_locus_tag=AD39_4801 NZ_JJLH01000065.1 Protein Homology CDS 39844 41058 . - 0 ID=cds-WP_071703779.1;Parent=gene-AD39_RS01595;Dbxref=GenBank:WP_071703779.1;Name=WP_071703779.1;gbkey=CDS;gene=ydcO;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001748359.1;locus_tag=AD39_RS01595;product=BenE family transporter YdcO;protein_id=WP_071703779.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 41111 41647 . + . ID=gene-AD39_RS01590;Name=sutR;gbkey=Gene;gene=sutR;gene_biotype=protein_coding;locus_tag=AD39_RS01590;old_locus_tag=AD39_4802 NZ_JJLH01000065.1 Protein Homology CDS 41111 41647 . + 0 ID=cds-WP_000429155.1;Parent=gene-AD39_RS01590;Dbxref=GenBank:WP_000429155.1;Name=WP_000429155.1;gbkey=CDS;gene=sutR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415951.1;locus_tag=AD39_RS01590;product=DNA-binding transcriptional regulator SutR;protein_id=WP_000429155.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 41720 43681 . + . ID=gene-AD39_RS01585;Name=rlhA;gbkey=Gene;gene=rlhA;gene_biotype=protein_coding;locus_tag=AD39_RS01585;old_locus_tag=AD39_4803 NZ_JJLH01000065.1 Protein Homology CDS 41720 43681 . + 0 ID=cds-WP_001460873.1;Parent=gene-AD39_RS01585;Dbxref=GenBank:WP_001460873.1;Name=WP_001460873.1;gbkey=CDS;gene=rlhA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415952.2;locus_tag=AD39_RS01585;product=23S rRNA 5-hydroxycytidine C2501 synthase;protein_id=WP_001460873.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 43773 44003 . - . ID=gene-AD39_RS0125715;Name=yncJ;gbkey=Gene;gene=yncJ;gene_biotype=protein_coding;locus_tag=AD39_RS0125715;old_locus_tag=AD39_4804 NZ_JJLH01000065.1 Protein Homology CDS 43773 44003 . - 0 ID=cds-WP_000494244.1;Parent=gene-AD39_RS0125715;Dbxref=GenBank:WP_000494244.1;Name=WP_000494244.1;gbkey=CDS;gene=yncJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415953.1;locus_tag=AD39_RS0125715;product=YncJ family protein;protein_id=WP_000494244.1;transl_table=11 NZ_JJLH01000065.1 RefSeq pseudogene 44225 44379 . + . ID=gene-AD39_RS0125720;Name=AD39_RS0125720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125720;pseudo=true NZ_JJLH01000065.1 Protein Homology CDS 44225 44379 . + 0 ID=cds-AD39_RS0125720;Parent=gene-AD39_RS0125720;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415954.2;locus_tag=AD39_RS0125720;product=mRNA interferase;pseudo=true;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 44425 44841 . + . ID=gene-AD39_RS01580;Name=hicB;gbkey=Gene;gene=hicB;gene_biotype=protein_coding;locus_tag=AD39_RS01580;old_locus_tag=AD39_4806 NZ_JJLH01000065.1 Protein Homology CDS 44425 44841 . + 0 ID=cds-WP_001270286.1;Parent=gene-AD39_RS01580;Dbxref=GenBank:WP_001270286.1;Name=WP_001270286.1;gbkey=CDS;gene=hicB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415955.2;locus_tag=AD39_RS01580;product=type II toxin-antitoxin system antitoxin HicB;protein_id=WP_001270286.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 44920 46326 . + . ID=gene-AD39_RS01575;Name=ydcR;gbkey=Gene;gene=ydcR;gene_biotype=protein_coding;locus_tag=AD39_RS01575;old_locus_tag=AD39_4807 NZ_JJLH01000065.1 Protein Homology CDS 44920 46326 . + 0 ID=cds-WP_001362758.1;Parent=gene-AD39_RS01575;Dbxref=GenBank:WP_001362758.1;Name=WP_001362758.1;Ontology_term=GO:0030170;gbkey=CDS;gene=ydcR;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415956.1;locus_tag=AD39_RS01575;product=PLP-dependent aminotransferase family protein;protein_id=WP_001362758.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 46571 47716 . + . ID=gene-AD39_RS01570;Name=ydcS;gbkey=Gene;gene=ydcS;gene_biotype=protein_coding;locus_tag=AD39_RS01570;old_locus_tag=AD39_4808 NZ_JJLH01000065.1 Protein Homology CDS 46571 47716 . + 0 ID=cds-WP_000047456.1;Parent=gene-AD39_RS01570;Dbxref=GenBank:WP_000047456.1;Name=WP_000047456.1;gbkey=CDS;gene=ydcS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415957.1;locus_tag=AD39_RS01570;product=putative ABC transporter substrate-binding protein YdcS;protein_id=WP_000047456.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 47734 48747 . + . ID=gene-AD39_RS01565;Name=ydcT;gbkey=Gene;gene=ydcT;gene_biotype=protein_coding;locus_tag=AD39_RS01565;old_locus_tag=AD39_4809 NZ_JJLH01000065.1 Protein Homology CDS 47734 48747 . + 0 ID=cds-WP_000220396.1;Parent=gene-AD39_RS01565;Dbxref=GenBank:WP_000220396.1;Name=WP_000220396.1;Ontology_term=GO:0005524,GO:0016887,GO:0042626,GO:0140359;gbkey=CDS;gene=ydcT;go_function=ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA,ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415958.1;locus_tag=AD39_RS01565;product=ABC transporter ATP-binding protein;protein_id=WP_000220396.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 48748 49689 . + . ID=gene-AD39_RS01560;Name=ydcU;gbkey=Gene;gene=ydcU;gene_biotype=protein_coding;locus_tag=AD39_RS01560;old_locus_tag=AD39_4810 NZ_JJLH01000065.1 Protein Homology CDS 48748 49689 . + 0 ID=cds-WP_001251315.1;Parent=gene-AD39_RS01560;Dbxref=GenBank:WP_001251315.1;Name=WP_001251315.1;Ontology_term=GO:0055085,GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;gene=ydcU;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310073.1;locus_tag=AD39_RS01560;product=ABC transporter permease;protein_id=WP_001251315.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 49679 50473 . + . ID=gene-AD39_RS01555;Name=ydcV;gbkey=Gene;gene=ydcV;gene_biotype=protein_coding;locus_tag=AD39_RS01555;old_locus_tag=AD39_4811 NZ_JJLH01000065.1 Protein Homology CDS 49679 50473 . + 0 ID=cds-WP_000555458.1;Parent=gene-AD39_RS01555;Dbxref=GenBank:WP_000555458.1;Name=WP_000555458.1;Ontology_term=GO:0042626,GO:0140359,GO:0016020;gbkey=CDS;gene=ydcV;go_component=membrane|0016020||IEA;go_function=ATPase-coupled transmembrane transporter activity|0042626||IEA,ABC-type transporter activity|0140359||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415960.1;locus_tag=AD39_RS01555;product=ABC transporter permease;protein_id=WP_000555458.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 50495 51919 . + . ID=gene-AD39_RS01550;Name=patD;gbkey=Gene;gene=patD;gene_biotype=protein_coding;locus_tag=AD39_RS01550;old_locus_tag=AD39_4812 NZ_JJLH01000065.1 Protein Homology CDS 50495 51919 . + 0 ID=cds-WP_001163892.1;Parent=gene-AD39_RS01550;Dbxref=GenBank:WP_001163892.1;Name=WP_001163892.1;Ontology_term=GO:0009447,GO:0019145,GO:0051287;gbkey=CDS;gene=patD;go_function=aminobutyraldehyde dehydrogenase (NAD+) activity|0019145||IEA,NAD binding|0051287||IEA;go_process=putrescine catabolic process|0009447||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415961.1;locus_tag=AD39_RS01550;product=aminobutyraldehyde dehydrogenase;protein_id=WP_001163892.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 52129 52938 . + . ID=gene-AD39_RS01545;Name=AD39_RS01545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01545;old_locus_tag=AD39_4813 NZ_JJLH01000065.1 Protein Homology CDS 52129 52938 . + 0 ID=cds-WP_000867987.1;Parent=gene-AD39_RS01545;Dbxref=GenBank:WP_000867987.1;Name=WP_000867987.1;Ontology_term=GO:0046677,GO:0016746;gbkey=CDS;go_function=acyltransferase activity|0016746||IEA;go_process=response to antibiotic|0046677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707637.1;locus_tag=AD39_RS01545;product=CatB-related O-acetyltransferase;protein_id=WP_000867987.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 53340 53435 . - . ID=gene-AD39_RS27965;Name=yncL;gbkey=Gene;gene=yncL;gene_biotype=protein_coding;locus_tag=AD39_RS27965 NZ_JJLH01000065.1 Protein Homology CDS 53340 53435 . - 0 ID=cds-WP_001303494.1;Parent=gene-AD39_RS27965;Dbxref=GenBank:WP_001303494.1;Name=WP_001303494.1;gbkey=CDS;gene=yncL;inference=COORDINATES: similar to AA sequence:RefSeq:YP_001165318.1;locus_tag=AD39_RS27965;product=stress response membrane protein YncL;protein_id=WP_001303494.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 53630 53803 . + . ID=gene-AD39_RS0125730;Name=ortT;gbkey=Gene;gene=ortT;gene_biotype=protein_coding;locus_tag=AD39_RS0125730;old_locus_tag=AD39_4814 NZ_JJLH01000065.1 Protein Homology CDS 53630 53803 . + 0 ID=cds-WP_000061178.1;Parent=gene-AD39_RS0125730;Dbxref=GenBank:WP_000061178.1;Name=WP_000061178.1;gbkey=CDS;gene=ortT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415962.2;locus_tag=AD39_RS0125730;product=orphan toxin OrtT;protein_id=WP_000061178.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 53889 54122 . + . ID=gene-AD39_RS01540;Name=ydcY;gbkey=Gene;gene=ydcY;gene_biotype=protein_coding;locus_tag=AD39_RS01540;old_locus_tag=AD39_4815 NZ_JJLH01000065.1 Protein Homology CDS 53889 54122 . + 0 ID=cds-WP_000018633.1;Parent=gene-AD39_RS01540;Dbxref=GenBank:WP_000018633.1;Name=WP_000018633.1;gbkey=CDS;gene=ydcY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310077.1;locus_tag=AD39_RS01540;product=DUF2526 family protein YdcY;protein_id=WP_000018633.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 54123 54572 . - . ID=gene-AD39_RS01535;Name=ydcZ;gbkey=Gene;gene=ydcZ;gene_biotype=protein_coding;locus_tag=AD39_RS01535;old_locus_tag=AD39_4816 NZ_JJLH01000065.1 Protein Homology CDS 54123 54572 . - 0 ID=cds-WP_001076535.1;Parent=gene-AD39_RS01535;Dbxref=GenBank:WP_001076535.1;Name=WP_001076535.1;Ontology_term=GO:0055085,GO:0005215,GO:0016020;gbkey=CDS;gene=ydcZ;go_component=membrane|0016020||IEA;go_function=transporter activity|0005215||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415964.1;locus_tag=AD39_RS01535;product=DMT family transporter;protein_id=WP_001076535.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 54569 55087 . - . ID=gene-AD39_RS01530;Name=mnaT;gbkey=Gene;gene=mnaT;gene_biotype=protein_coding;locus_tag=AD39_RS01530;old_locus_tag=AD39_4817 NZ_JJLH01000065.1 Protein Homology CDS 54569 55087 . - 0 ID=cds-WP_000027563.1;Parent=gene-AD39_RS01530;Dbxref=GenBank:WP_000027563.1;Name=WP_000027563.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;gene=mnaT;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310079.1;locus_tag=AD39_RS01530;product=GNAT family N-acetyltransferase;protein_id=WP_000027563.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 55268 56305 . + . ID=gene-AD39_RS01525;Name=curA;gbkey=Gene;gene=curA;gene_biotype=protein_coding;locus_tag=AD39_RS01525;old_locus_tag=AD39_4818 NZ_JJLH01000065.1 Protein Homology CDS 55268 56305 . + 0 ID=cds-WP_032283194.1;Parent=gene-AD39_RS01525;Dbxref=GenBank:WP_032283194.1;Name=WP_032283194.1;gbkey=CDS;gene=curA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415966.6;locus_tag=AD39_RS01525;product=NADPH-dependent curcumin/dihydrocurcumin reductase;protein_id=WP_032283194.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 56503 57168 . + . ID=gene-AD39_RS01520;Name=mcbR;gbkey=Gene;gene=mcbR;gene_biotype=protein_coding;locus_tag=AD39_RS01520;old_locus_tag=AD39_4819 NZ_JJLH01000065.1 Protein Homology CDS 56503 57168 . + 0 ID=cds-WP_001300742.1;Parent=gene-AD39_RS01520;Dbxref=GenBank:WP_001300742.1;Name=WP_001300742.1;gbkey=CDS;gene=mcbR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415967.2;locus_tag=AD39_RS01520;product=colanic acid/biofilm transcriptional regulator McbR;protein_id=WP_001300742.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 57204 59306 . - . ID=gene-AD39_RS01515;Name=pqqU;gbkey=Gene;gene=pqqU;gene_biotype=protein_coding;locus_tag=AD39_RS01515;old_locus_tag=AD39_4820 NZ_JJLH01000065.1 Protein Homology CDS 57204 59306 . - 0 ID=cds-WP_032283197.1;Parent=gene-AD39_RS01515;Dbxref=GenBank:WP_032283197.1;Name=WP_032283197.1;gbkey=CDS;gene=pqqU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415968.1;locus_tag=AD39_RS01515;product=TonB-dependent receptor PqqU;protein_id=WP_032283197.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 59548 60609 . + . ID=gene-AD39_RS01510;Name=yncE;gbkey=Gene;gene=yncE;gene_biotype=protein_coding;locus_tag=AD39_RS01510;old_locus_tag=AD39_4821 NZ_JJLH01000065.1 Protein Homology CDS 59548 60609 . + 0 ID=cds-WP_000550677.1;Parent=gene-AD39_RS01510;Dbxref=GenBank:WP_000550677.1;Name=WP_000550677.1;gbkey=CDS;gene=yncE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310083.1;locus_tag=AD39_RS01510;product=YncE family protein;protein_id=WP_000550677.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 60724 62223 . - . ID=gene-AD39_RS01505;Name=ansP;gbkey=Gene;gene=ansP;gene_biotype=protein_coding;locus_tag=AD39_RS01505;old_locus_tag=AD39_4822 NZ_JJLH01000065.1 Protein Homology CDS 60724 62223 . - 0 ID=cds-WP_032287663.1;Parent=gene-AD39_RS01505;Dbxref=GenBank:WP_032287663.1;Name=WP_032287663.1;Ontology_term=GO:0006865,GO:0016020;gbkey=CDS;gene=ansP;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310084.2;locus_tag=AD39_RS01505;product=L-asparagine permease;protein_id=WP_032287663.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 63161 63691 . + . ID=gene-AD39_RS01500;Name=AD39_RS01500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01500;old_locus_tag=AD39_4824 NZ_JJLH01000065.1 Protein Homology CDS 63161 63691 . + 0 ID=cds-WP_000058708.1;Parent=gene-AD39_RS01500;Dbxref=GenBank:WP_000058708.1;Name=WP_000058708.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016248712.1;locus_tag=AD39_RS01500;product=hypothetical protein;protein_id=WP_000058708.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 63688 64050 . + . ID=gene-AD39_RS27990;Name=AD39_RS27990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS27990 NZ_JJLH01000065.1 Protein Homology CDS 63688 64050 . + 0 ID=cds-WP_001542896.1;Parent=gene-AD39_RS27990;Dbxref=GenBank:WP_001542896.1;Name=WP_001542896.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000819258.1;locus_tag=AD39_RS27990;product=hypothetical protein;protein_id=WP_001542896.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 64272 66269 . + . ID=gene-AD39_RS01495;Name=AD39_RS01495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01495;old_locus_tag=AD39_4826 NZ_JJLH01000065.1 Protein Homology CDS 64272 66269 . + 0 ID=cds-WP_000006345.1;Parent=gene-AD39_RS01495;Dbxref=GenBank:WP_000006345.1;Name=WP_000006345.1;Ontology_term=GO:0033103,GO:0033104;gbkey=CDS;go_component=type VI protein secretion system complex|0033104||IEA;go_process=protein secretion by the type VI secretion system|0033103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000006345.1;locus_tag=AD39_RS01495;product=type VI secretion system Vgr family protein;protein_id=WP_000006345.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 66316 66768 . + . ID=gene-AD39_RS01490;Name=AD39_RS01490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01490;old_locus_tag=AD39_4827 NZ_JJLH01000065.1 Protein Homology CDS 66316 66768 . + 0 ID=cds-WP_001542752.1-2;Parent=gene-AD39_RS01490;Dbxref=GenBank:WP_001542752.1;Name=WP_001542752.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003570644.1;locus_tag=AD39_RS01490;product=DcrB-related protein;protein_id=WP_001542752.1;transl_table=11 NZ_JJLH01000065.1 RefSeq gene 66787 70854 . + . ID=gene-AD39_RS01485;Name=AD39_RS01485;end_range=70854,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01485;old_locus_tag=AD39_4828;partial=true NZ_JJLH01000065.1 Protein Homology CDS 66787 70854 . + 0 ID=cds-WP_032287504.1-2;Parent=gene-AD39_RS01485;Dbxref=GenBank:WP_032287504.1;Name=WP_032287504.1;end_range=70854,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000390554.1;locus_tag=AD39_RS01485;partial=true;product=DUF6531 domain-containing protein;protein_id=WP_032287504.1;transl_table=11 ##sequence-region NZ_JJLH01000066.1 1 104774 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000066.1 RefSeq region 1 104774 . + . ID=NZ_JJLH01000066.1:1..104774;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000066.1 RefSeq gene 1 356 . + . ID=gene-AD39_RS0125735;Name=AD39_RS0125735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125735;old_locus_tag=AD39_4829;partial=true;start_range=.,1 NZ_JJLH01000066.1 Protein Homology CDS 1 356 . + 2 ID=cds-WP_140429213.1;Parent=gene-AD39_RS0125735;Dbxref=GenBank:WP_140429213.1;Name=WP_140429213.1;Ontology_term=GO:0006310,GO:0032196,GO:0003677,GO:0004519,GO:0046872;gbkey=CDS;go_function=DNA binding|0003677||IEA,endonuclease activity|0004519||IEA,metal ion binding|0046872||IEA;go_process=DNA recombination|0006310||IEA,transposition|0032196||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415949.3;locus_tag=AD39_RS0125735;partial=true;product=RNA-guided endonuclease InsQ/TnpB family protein;protein_id=WP_140429213.1;start_range=.,1;transl_table=11 NZ_JJLH01000066.1 RefSeq pseudogene 400 507 . + . ID=gene-AD39_RS29535;Name=AD39_RS29535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29535;partial=true;pseudo=true;start_range=.,400 NZ_JJLH01000066.1 Protein Homology CDS 400 507 . + 0 ID=cds-AD39_RS29535;Parent=gene-AD39_RS29535;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709992.3;locus_tag=AD39_RS29535;partial=true;product=TetR/AcrR family transcriptional regulator;pseudo=true;start_range=.,400;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 491 1129 . - . ID=gene-AD39_RS01480;Name=ytfB;gbkey=Gene;gene=ytfB;gene_biotype=protein_coding;locus_tag=AD39_RS01480;old_locus_tag=AD39_4830 NZ_JJLH01000066.1 Protein Homology CDS 491 1129 . - 0 ID=cds-WP_001119478.1;Parent=gene-AD39_RS01480;Dbxref=GenBank:WP_001119478.1;Name=WP_001119478.1;gbkey=CDS;gene=ytfB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418627.4;locus_tag=AD39_RS01480;product=cell division protein YtfB;protein_id=WP_001119478.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 1347 1967 . + . ID=gene-AD39_RS01475;Name=fklB;gbkey=Gene;gene=fklB;gene_biotype=protein_coding;locus_tag=AD39_RS01475;old_locus_tag=AD39_4831 NZ_JJLH01000066.1 Protein Homology CDS 1347 1967 . + 0 ID=cds-WP_000211225.1;Parent=gene-AD39_RS01475;Dbxref=GenBank:WP_000211225.1;Name=WP_000211225.1;gbkey=CDS;gene=fklB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015742582.1;locus_tag=AD39_RS01475;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000211225.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 2276 3688 . + . ID=gene-AD39_RS01470;Name=cycA;gbkey=Gene;gene=cycA;gene_biotype=protein_coding;gene_synonym=dagA;locus_tag=AD39_RS01470;old_locus_tag=AD39_4832 NZ_JJLH01000066.1 Protein Homology CDS 2276 3688 . + 0 ID=cds-WP_000228346.1;Parent=gene-AD39_RS01470;Dbxref=GenBank:WP_000228346.1;Name=WP_000228346.1;Ontology_term=GO:0006865,GO:0055085,GO:0016020;gbkey=CDS;gene=cycA;go_component=membrane|0016020||IEA;go_process=amino acid transport|0006865||IEA,transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313213.1;locus_tag=AD39_RS01470;product=D-serine/D-alanine/glycine transporter;protein_id=WP_000228346.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 3733 4395 . - . ID=gene-AD39_RS01465;Name=ytfE;gbkey=Gene;gene=ytfE;gene_biotype=protein_coding;locus_tag=AD39_RS01465;old_locus_tag=AD39_4833 NZ_JJLH01000066.1 Protein Homology CDS 3733 4395 . - 0 ID=cds-WP_000331456.1;Parent=gene-AD39_RS01465;Dbxref=GenBank:WP_000331456.1;Name=WP_000331456.1;gbkey=CDS;gene=ytfE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418630.1;locus_tag=AD39_RS01465;product=iron-sulfur cluster repair protein YtfE;protein_id=WP_000331456.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 4503 5468 . - . ID=gene-AD39_RS01460;Name=ytfF;gbkey=Gene;gene=ytfF;gene_biotype=protein_coding;locus_tag=AD39_RS01460;old_locus_tag=AD39_4834 NZ_JJLH01000066.1 Protein Homology CDS 4503 5468 . - 0 ID=cds-WP_001297263.1;Parent=gene-AD39_RS01460;Dbxref=GenBank:WP_001297263.1;Name=WP_001297263.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=ytfF;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313215.2;locus_tag=AD39_RS01460;product=DMT family transporter;protein_id=WP_001297263.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 5577 6437 . - . ID=gene-AD39_RS01455;Name=qorB;gbkey=Gene;gene=qorB;gene_biotype=protein_coding;locus_tag=AD39_RS01455;old_locus_tag=AD39_4835 NZ_JJLH01000066.1 Protein Homology CDS 5577 6437 . - 0 ID=cds-WP_000560563.1;Parent=gene-AD39_RS01455;Dbxref=GenBank:WP_000560563.1;Name=WP_000560563.1;gbkey=CDS;gene=qorB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418632.1;locus_tag=AD39_RS01455;product=NAD(P)H:quinone oxidoreductase;protein_id=WP_000560563.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 6526 6906 . + . ID=gene-AD39_RS01450;Name=ytfH;gbkey=Gene;gene=ytfH;gene_biotype=protein_coding;locus_tag=AD39_RS01450;old_locus_tag=AD39_4836 NZ_JJLH01000066.1 Protein Homology CDS 6526 6906 . + 0 ID=cds-WP_000084622.1;Parent=gene-AD39_RS01450;Dbxref=GenBank:WP_000084622.1;Name=WP_000084622.1;Ontology_term=GO:0003677;gbkey=CDS;gene=ytfH;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418633.4;locus_tag=AD39_RS01450;product=winged helix-turn-helix transcriptional regulator;protein_id=WP_000084622.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 7035 8978 . - . ID=gene-AD39_RS01445;Name=cpdB;gbkey=Gene;gene=cpdB;gene_biotype=protein_coding;locus_tag=AD39_RS01445;old_locus_tag=AD39_4837 NZ_JJLH01000066.1 Protein Homology CDS 7035 8978 . - 0 ID=cds-WP_001622078.1;Parent=gene-AD39_RS01445;Dbxref=GenBank:WP_001622078.1;Name=WP_001622078.1;Ontology_term=GO:0009117,GO:0008663;gbkey=CDS;gene=cpdB;go_function=2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase activity|0008663||IEA;go_process=nucleotide metabolic process|0009117||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418634.1;locus_tag=AD39_RS01445;product=2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase;protein_id=WP_001622078.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 9168 9908 . + . ID=gene-AD39_RS01440;Name=cysQ;gbkey=Gene;gene=cysQ;gene_biotype=protein_coding;locus_tag=AD39_RS01440;old_locus_tag=AD39_4838 NZ_JJLH01000066.1 Protein Homology CDS 9168 9908 . + 0 ID=cds-WP_000886909.1;Parent=gene-AD39_RS01440;Dbxref=GenBank:WP_000886909.1;Name=WP_000886909.1;Ontology_term=GO:0000287,GO:0008441;gbkey=CDS;gene=cysQ;go_function=magnesium ion binding|0000287||IEA,3'(2')%2C5'-bisphosphate nucleotidase activity|0008441||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313219.1;locus_tag=AD39_RS01440;product=3'(2')%2C5'-bisphosphate nucleotidase CysQ;protein_id=WP_000886909.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 9898 10455 . - . ID=gene-AD39_RS01435;Name=ytfJ;gbkey=Gene;gene=ytfJ;gene_biotype=protein_coding;locus_tag=AD39_RS01435;old_locus_tag=AD39_4839 NZ_JJLH01000066.1 Protein Homology CDS 9898 10455 . - 0 ID=cds-WP_000175289.1;Parent=gene-AD39_RS01435;Dbxref=GenBank:WP_000175289.1;Name=WP_000175289.1;gbkey=CDS;gene=ytfJ;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001498728.1;locus_tag=AD39_RS01435;product=YtfJ family protein;protein_id=WP_000175289.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 10780 10986 . + . ID=gene-AD39_RS01430;Name=ytfK;gbkey=Gene;gene=ytfK;gene_biotype=protein_coding;locus_tag=AD39_RS01430;old_locus_tag=AD39_4840 NZ_JJLH01000066.1 Protein Homology CDS 10780 10986 . + 0 ID=cds-WP_000689228.1;Parent=gene-AD39_RS01430;Dbxref=GenBank:WP_000689228.1;Name=WP_000689228.1;gbkey=CDS;gene=ytfK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966176.1;locus_tag=AD39_RS01430;product=DUF1107 domain-containing protein;protein_id=WP_000689228.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 11048 12391 . - . ID=gene-AD39_RS01425;Name=paeA;gbkey=Gene;gene=paeA;gene_biotype=protein_coding;locus_tag=AD39_RS01425;old_locus_tag=AD39_4841 NZ_JJLH01000066.1 Protein Homology CDS 11048 12391 . - 0 ID=cds-WP_000935036.1;Parent=gene-AD39_RS01425;Dbxref=GenBank:WP_000935036.1;Name=WP_000935036.1;Ontology_term=GO:0005886,GO:0016020;gbkey=CDS;gene=paeA;go_component=plasma membrane|0005886||IEA,membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313223.1;locus_tag=AD39_RS01425;product=hemolysin family protein;protein_id=WP_000935036.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 12714 13352 . - . ID=gene-AD39_RS01420;Name=msrA;gbkey=Gene;gene=msrA;gene_biotype=protein_coding;locus_tag=AD39_RS01420;old_locus_tag=AD39_4842 NZ_JJLH01000066.1 Protein Homology CDS 12714 13352 . - 0 ID=cds-WP_001305659.1;Parent=gene-AD39_RS01420;Dbxref=GenBank:WP_001305659.1;Name=WP_001305659.1;Ontology_term=GO:0006979,GO:0030091,GO:0008113,GO:0033744;gbkey=CDS;gene=msrA;go_function=peptide-methionine (S)-S-oxide reductase activity|0008113||IEA,L-methionine:thioredoxin-disulfide S-oxidoreductase activity|0033744||IEA;go_process=response to oxidative stress|0006979||IEA,protein repair|0030091||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418640.1;locus_tag=AD39_RS01420;product=peptide-methionine (S)-S-oxide reductase MsrA;protein_id=WP_001305659.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 13558 15291 . + . ID=gene-AD39_RS01410;Name=tamA;gbkey=Gene;gene=tamA;gene_biotype=protein_coding;locus_tag=AD39_RS01410;old_locus_tag=AD39_4844 NZ_JJLH01000066.1 Protein Homology CDS 13558 15291 . + 0 ID=cds-WP_001269329.1;Parent=gene-AD39_RS01410;Dbxref=GenBank:WP_001269329.1;Name=WP_001269329.1;Ontology_term=GO:0009306,GO:0089705;gbkey=CDS;gene=tamA;go_process=protein secretion|0009306||IEA,protein localization to outer membrane|0089705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313225.1;locus_tag=AD39_RS01410;product=autotransporter assembly complex protein TamA;protein_id=WP_001269329.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 15288 19067 . + . ID=gene-AD39_RS01405;Name=tamB;gbkey=Gene;gene=tamB;gene_biotype=protein_coding;locus_tag=AD39_RS01405;old_locus_tag=AD39_4845 NZ_JJLH01000066.1 Protein Homology CDS 15288 19067 . + 0 ID=cds-WP_000060921.1;Parent=gene-AD39_RS01405;Dbxref=GenBank:WP_000060921.1;Name=WP_000060921.1;Ontology_term=GO:0009306,GO:0089705;gbkey=CDS;gene=tamB;go_process=protein secretion|0009306||IEA,protein localization to outer membrane|0089705||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709977.1;locus_tag=AD39_RS01405;product=autotransporter assembly complex protein TamB;protein_id=WP_000060921.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 19070 19411 . + . ID=gene-AD39_RS01400;Name=ytfP;gbkey=Gene;gene=ytfP;gene_biotype=protein_coding;locus_tag=AD39_RS01400;old_locus_tag=AD39_4846 NZ_JJLH01000066.1 Protein Homology CDS 19070 19411 . + 0 ID=cds-WP_001219160.1;Parent=gene-AD39_RS01400;Dbxref=GenBank:WP_001219160.1;Name=WP_001219160.1;Ontology_term=GO:0061929;gbkey=CDS;gene=ytfP;go_function=gamma-glutamylaminecyclotransferase activity|0061929||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313227.1;locus_tag=AD39_RS01400;product=gamma-glutamylcyclotransferase family protein;protein_id=WP_001219160.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 19623 19874 . + . ID=gene-AD39_RS01395;Name=chpS;gbkey=Gene;gene=chpS;gene_biotype=protein_coding;locus_tag=AD39_RS01395;old_locus_tag=AD39_4847 NZ_JJLH01000066.1 Protein Homology CDS 19623 19874 . + 0 ID=cds-WP_001223210.1;Parent=gene-AD39_RS01395;Dbxref=GenBank:WP_001223210.1;Name=WP_001223210.1;gbkey=CDS;gene=chpS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313229.2;locus_tag=AD39_RS01395;product=type II toxin-antitoxin system antitoxin ChpS;protein_id=WP_001223210.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 19868 20218 . + . ID=gene-AD39_RS01390;Name=chpB;gbkey=Gene;gene=chpB;gene_biotype=protein_coding;locus_tag=AD39_RS01390;old_locus_tag=AD39_4848 NZ_JJLH01000066.1 Protein Homology CDS 19868 20218 . + 0 ID=cds-WP_000239579.1;Parent=gene-AD39_RS01390;Dbxref=GenBank:WP_000239579.1;Name=WP_000239579.1;gbkey=CDS;gene=chpB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418646.1;locus_tag=AD39_RS01390;product=endoribonuclease toxin ChpB;protein_id=WP_000239579.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 20298 20828 . - . ID=gene-AD39_RS01385;Name=ppa;gbkey=Gene;gene=ppa;gene_biotype=protein_coding;locus_tag=AD39_RS01385;old_locus_tag=AD39_4849 NZ_JJLH01000066.1 Protein Homology CDS 20298 20828 . - 0 ID=cds-WP_000055072.1;Parent=gene-AD39_RS01385;Dbxref=GenBank:WP_000055072.1;Name=WP_000055072.1;Ontology_term=GO:0006796,GO:0004427;gbkey=CDS;gene=ppa;go_function=inorganic diphosphate phosphatase activity|0004427||IEA;go_process=phosphate-containing compound metabolic process|0006796||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001739810.1;locus_tag=AD39_RS01385;product=inorganic diphosphatase;protein_id=WP_000055072.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 21138 22094 . + . ID=gene-AD39_RS01380;Name=ytfQ;gbkey=Gene;gene=ytfQ;gene_biotype=protein_coding;locus_tag=AD39_RS01380;old_locus_tag=AD39_4850 NZ_JJLH01000066.1 Protein Homology CDS 21138 22094 . + 0 ID=cds-WP_000265933.1;Parent=gene-AD39_RS01380;Dbxref=GenBank:WP_000265933.1;Name=WP_000265933.1;gbkey=CDS;gene=ytfQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313232.1;locus_tag=AD39_RS01380;product=galactofuranose ABC transporter substrate-binding protein YtfQ;protein_id=WP_000265933.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 22234 23736 . + . ID=gene-AD39_RS01375;Name=ytfR;gbkey=Gene;gene=ytfR;gene_biotype=protein_coding;locus_tag=AD39_RS01375;old_locus_tag=AD39_4851 NZ_JJLH01000066.1 Protein Homology CDS 22234 23736 . + 0 ID=cds-WP_000205784.1;Parent=gene-AD39_RS01375;Dbxref=GenBank:WP_000205784.1;Name=WP_000205784.1;Ontology_term=GO:0042875,GO:0103116;gbkey=CDS;gene=ytfR;go_function=ABC-type D-galactofuranose transporter|0103116||IEA;go_process=D-galactonate transmembrane transport|0042875||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026286.1;locus_tag=AD39_RS01375;product=galactofuranose ABC transporter%2C ATP-binding protein YtfR;protein_id=WP_000205784.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 23750 24772 . + . ID=gene-AD39_RS01370;Name=ytfT;gbkey=Gene;gene=ytfT;gene_biotype=protein_coding;locus_tag=AD39_RS01370;old_locus_tag=AD39_4852 NZ_JJLH01000066.1 Protein Homology CDS 23750 24772 . + 0 ID=cds-WP_001295197.1;Parent=gene-AD39_RS01370;Dbxref=GenBank:WP_001295197.1;Name=WP_001295197.1;Ontology_term=GO:0042875,GO:0103116;gbkey=CDS;gene=ytfT;go_function=ABC-type D-galactofuranose transporter|0103116||IEA;go_process=D-galactonate transmembrane transport|0042875||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313234.2;locus_tag=AD39_RS01370;product=galactofuranose ABC transporter%2C ATP-binding protein YtfT;protein_id=WP_001295197.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 24759 25754 . + . ID=gene-AD39_RS01365;Name=yjfF;gbkey=Gene;gene=yjfF;gene_biotype=protein_coding;locus_tag=AD39_RS01365;old_locus_tag=AD39_4853 NZ_JJLH01000066.1 Protein Homology CDS 24759 25754 . + 0 ID=cds-WP_000596008.1;Parent=gene-AD39_RS01365;Dbxref=GenBank:WP_000596008.1;Name=WP_000596008.1;Ontology_term=GO:0042875,GO:0103116,GO:0016020;gbkey=CDS;gene=yjfF;go_component=membrane|0016020||IEA;go_function=ABC-type D-galactofuranose transporter|0103116||IEA;go_process=D-galactonate transmembrane transport|0042875||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313235.2;locus_tag=AD39_RS01365;product=galactofuranose ABC transporter%2C permease protein YjfF;protein_id=WP_000596008.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 25787 26785 . - . ID=gene-AD39_RS01360;Name=fbp;gbkey=Gene;gene=fbp;gene_biotype=protein_coding;locus_tag=AD39_RS01360;old_locus_tag=AD39_4854 NZ_JJLH01000066.1 Protein Homology CDS 25787 26785 . - 0 ID=cds-WP_000853753.1;Parent=gene-AD39_RS01360;Dbxref=GenBank:WP_000853753.1;Name=WP_000853753.1;Ontology_term=GO:0005975,GO:0042132;gbkey=CDS;gene=fbp;go_function=fructose 1%2C6-bisphosphate 1-phosphatase activity|0042132||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016233757.1;locus_tag=AD39_RS01360;product=class 1 fructose-bisphosphatase;protein_id=WP_000853753.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 26961 28334 . + . ID=gene-AD39_RS01355;Name=mpl;gbkey=Gene;gene=mpl;gene_biotype=protein_coding;locus_tag=AD39_RS01355;old_locus_tag=AD39_4856 NZ_JJLH01000066.1 Protein Homology CDS 26961 28334 . + 0 ID=cds-WP_001219806.1;Parent=gene-AD39_RS01355;Dbxref=GenBank:WP_001219806.1;Name=WP_001219806.1;Ontology_term=GO:0009252,GO:0071555,GO:0016881;gbkey=CDS;gene=mpl;go_function=acid-amino acid ligase activity|0016881||IEA;go_process=peptidoglycan biosynthetic process|0009252||IEA,cell wall organization|0071555||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313237.1;locus_tag=AD39_RS01355;product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase;protein_id=WP_001219806.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 28485 29036 . - . ID=gene-AD39_RS01350;Name=yjgA;gbkey=Gene;gene=yjgA;gene_biotype=protein_coding;locus_tag=AD39_RS01350;old_locus_tag=AD39_4857 NZ_JJLH01000066.1 Protein Homology CDS 28485 29036 . - 0 ID=cds-WP_000166270.1;Parent=gene-AD39_RS01350;Dbxref=GenBank:WP_000166270.1;Name=WP_000166270.1;Ontology_term=GO:0042254;gbkey=CDS;gene=yjgA;go_process=ribosome biogenesis|0042254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313238.1;locus_tag=AD39_RS01350;product=ribosome biogenesis factor YjgA;protein_id=WP_000166270.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 29130 30482 . + . ID=gene-AD39_RS01345;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;locus_tag=AD39_RS01345;old_locus_tag=AD39_4858 NZ_JJLH01000066.1 Protein Homology CDS 29130 30482 . + 0 ID=cds-WP_032283671.1;Parent=gene-AD39_RS01345;Dbxref=GenBank:WP_032283671.1;Name=WP_032283671.1;Ontology_term=GO:0006508,GO:0008237;gbkey=CDS;gene=pmbA;go_function=metallopeptidase activity|0008237||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313239.1;locus_tag=AD39_RS01345;product=metalloprotease PmbA;protein_id=WP_032283671.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 30537 30923 . + . ID=gene-AD39_RS01340;Name=cybC;gbkey=Gene;gene=cybC;gene_biotype=protein_coding;locus_tag=AD39_RS01340;old_locus_tag=AD39_4859 NZ_JJLH01000066.1 Protein Homology CDS 30537 30923 . + 0 ID=cds-WP_001232246.1;Parent=gene-AD39_RS01340;Dbxref=GenBank:WP_001232246.1;Name=WP_001232246.1;Ontology_term=GO:0022900,GO:0005506,GO:0009055,GO:0042597;gbkey=CDS;gene=cybC;go_component=periplasmic space|0042597||IEA;go_function=iron ion binding|0005506||IEA,electron transfer activity|0009055||IEA;go_process=electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313240.2;locus_tag=AD39_RS01340;product=cytochrome b562;protein_id=WP_001232246.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 30968 31432 . - . ID=gene-AD39_RS01335;Name=nrdG;gbkey=Gene;gene=nrdG;gene_biotype=protein_coding;locus_tag=AD39_RS01335;old_locus_tag=AD39_4860 NZ_JJLH01000066.1 Protein Homology CDS 30968 31432 . - 0 ID=cds-WP_001106233.1;Parent=gene-AD39_RS01335;Dbxref=GenBank:WP_001106233.1;Name=WP_001106233.1;Ontology_term=GO:0043365,GO:0051539;gbkey=CDS;gene=nrdG;go_function=[formate-C-acetyltransferase]-activating enzyme activity|0043365||IEA,4 iron%2C 4 sulfur cluster binding|0051539||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313241.1;locus_tag=AD39_RS01335;product=anaerobic ribonucleoside-triphosphate reductase-activating protein;protein_id=WP_001106233.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 31591 33729 . - . ID=gene-AD39_RS01330;Name=nrdD;gbkey=Gene;gene=nrdD;gene_biotype=protein_coding;locus_tag=AD39_RS01330;old_locus_tag=AD39_4861 NZ_JJLH01000066.1 Protein Homology CDS 31591 33729 . - 0 ID=cds-WP_001472757.1;Parent=gene-AD39_RS01330;Dbxref=GenBank:WP_001472757.1;Name=WP_001472757.1;Ontology_term=GO:0006260,GO:0008998;gbkey=CDS;gene=nrdD;go_function=ribonucleoside-triphosphate reductase (thioredoxin) activity|0008998||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418659.1;locus_tag=AD39_RS01330;product=anaerobic ribonucleoside-triphosphate reductase;protein_id=WP_001472757.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 34123 35778 . - . ID=gene-AD39_RS01325;Name=treC;gbkey=Gene;gene=treC;gene_biotype=protein_coding;locus_tag=AD39_RS01325;old_locus_tag=AD39_4863 NZ_JJLH01000066.1 Protein Homology CDS 34123 35778 . - 0 ID=cds-WP_001348238.1;Parent=gene-AD39_RS01325;Dbxref=GenBank:WP_001348238.1;Name=WP_001348238.1;Ontology_term=GO:0005991,GO:0008788,GO:0005737;gbkey=CDS;gene=treC;go_component=cytoplasm|0005737||IEA;go_function=alpha%2Calpha-phosphotrehalase activity|0008788||IEA;go_process=trehalose metabolic process|0005991||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709962.2;locus_tag=AD39_RS01325;product=alpha%2Calpha-phosphotrehalase;protein_id=WP_001348238.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 35828 37249 . - . ID=gene-AD39_RS01320;Name=treB;gbkey=Gene;gene=treB;gene_biotype=protein_coding;locus_tag=AD39_RS01320;old_locus_tag=AD39_4864 NZ_JJLH01000066.1 Protein Homology CDS 35828 37249 . - 0 ID=cds-WP_001299664.1;Parent=gene-AD39_RS01320;Dbxref=GenBank:WP_001299664.1;Name=WP_001299664.1;Ontology_term=GO:0009401,GO:0015771,GO:0008982,GO:0015574,GO:0016020;gbkey=CDS;gene=treB;go_component=membrane|0016020||IEA;go_function=protein-N(PI)-phosphohistidine-sugar phosphotransferase activity|0008982||IEA,trehalose transmembrane transporter activity|0015574||IEA;go_process=phosphoenolpyruvate-dependent sugar phosphotransferase system|0009401||IEA,trehalose transport|0015771||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313244.1;locus_tag=AD39_RS01320;product=PTS trehalose transporter subunit IIBC;protein_id=WP_001299664.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 37368 38315 . - . ID=gene-AD39_RS01315;Name=treR;gbkey=Gene;gene=treR;gene_biotype=protein_coding;locus_tag=AD39_RS01315;old_locus_tag=AD39_4865 NZ_JJLH01000066.1 Protein Homology CDS 37368 38315 . - 0 ID=cds-WP_001181324.1;Parent=gene-AD39_RS01315;Dbxref=GenBank:WP_001181324.1;Name=WP_001181324.1;Ontology_term=GO:0005991,GO:0006355,GO:0045892,GO:0003677;gbkey=CDS;gene=treR;go_function=DNA binding|0003677||IEA;go_process=trehalose metabolic process|0005991||IEA,regulation of DNA-templated transcription|0006355||IEA,negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418662.1;locus_tag=AD39_RS01315;product=trehalose operon repressor TreR;protein_id=WP_001181324.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 38500 38553 . + . ID=gene-AD39_RS29310;Name=mgtL;gbkey=Gene;gene=mgtL;gene_biotype=protein_coding;locus_tag=AD39_RS29310 NZ_JJLH01000066.1 Protein Homology CDS 38500 38553 . + 0 ID=cds-WP_001387276.1;Parent=gene-AD39_RS29310;Dbxref=GenBank:WP_001387276.1;Name=WP_001387276.1;gbkey=CDS;gene=mgtL;inference=COORDINATES: similar to AA sequence:RefSeq:YP_003933616.1;locus_tag=AD39_RS29310;product=mgtA regulatory leader peptide MgtL;protein_id=WP_001387276.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 38694 41390 . + . ID=gene-AD39_RS01310;Name=mgtA;gbkey=Gene;gene=mgtA;gene_biotype=protein_coding;locus_tag=AD39_RS01310;old_locus_tag=AD39_4866 NZ_JJLH01000066.1 Protein Homology CDS 38694 41390 . + 0 ID=cds-WP_032283672.1;Parent=gene-AD39_RS01310;Dbxref=GenBank:WP_032283672.1;Name=WP_032283672.1;Ontology_term=GO:0015693,GO:0015444,GO:0016020;gbkey=CDS;gene=mgtA;go_component=membrane|0016020||IEA;go_function=P-type magnesium transporter activity|0015444||IEA;go_process=magnesium ion transport|0015693||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313246.1;locus_tag=AD39_RS01310;product=magnesium-translocating P-type ATPase;protein_id=WP_032283672.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 41596 41982 . - . ID=gene-AD39_RS01305;Name=ridA;gbkey=Gene;gene=ridA;gene_biotype=protein_coding;locus_tag=AD39_RS01305;old_locus_tag=AD39_4867 NZ_JJLH01000066.1 Protein Homology CDS 41596 41982 . - 0 ID=cds-WP_000047539.1;Parent=gene-AD39_RS01305;Dbxref=GenBank:WP_000047539.1;Name=WP_000047539.1;gbkey=CDS;gene=ridA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418664.2;locus_tag=AD39_RS01305;product=2-iminobutanoate/2-iminopropanoate deaminase;protein_id=WP_000047539.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 42055 42516 . - . ID=gene-AD39_RS01300;Name=pyrI;gbkey=Gene;gene=pyrI;gene_biotype=protein_coding;locus_tag=AD39_RS01300;old_locus_tag=AD39_4868 NZ_JJLH01000066.1 Protein Homology CDS 42055 42516 . - 0 ID=cds-WP_000148581.1;Parent=gene-AD39_RS01300;Dbxref=GenBank:WP_000148581.1;Name=WP_000148581.1;Ontology_term=GO:0006207,GO:0009347;gbkey=CDS;gene=pyrI;go_component=aspartate carbamoyltransferase complex|0009347||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000148566.1;locus_tag=AD39_RS01300;product=aspartate carbamoyltransferase regulatory subunit;protein_id=WP_000148581.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 42529 43464 . - . ID=gene-AD39_RS01295;Name=pyrB;gbkey=Gene;gene=pyrB;gene_biotype=protein_coding;locus_tag=AD39_RS01295;old_locus_tag=AD39_4869 NZ_JJLH01000066.1 Protein Homology CDS 42529 43464 . - 0 ID=cds-WP_032179348.1;Parent=gene-AD39_RS01295;Dbxref=GenBank:WP_032179348.1;Name=WP_032179348.1;Ontology_term=GO:0006207,GO:0004070;gbkey=CDS;gene=pyrB;go_function=aspartate carbamoyltransferase activity|0004070||IEA;go_process='de novo' pyrimidine nucleobase biosynthetic process|0006207||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313249.1;locus_tag=AD39_RS01295;product=aspartate carbamoyltransferase;protein_id=WP_032179348.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 43468 43602 . - . ID=gene-AD39_RS0125740;Name=pyrL;gbkey=Gene;gene=pyrL;gene_biotype=protein_coding;locus_tag=AD39_RS0125740 NZ_JJLH01000066.1 Protein Homology CDS 43468 43602 . - 0 ID=cds-WP_001296693.1;Parent=gene-AD39_RS0125740;Dbxref=GenBank:WP_001296693.1;Name=WP_001296693.1;gbkey=CDS;gene=pyrL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313250.1;locus_tag=AD39_RS0125740;product=pyr operon leader peptide;protein_id=WP_001296693.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 43883 44278 . - . ID=gene-AD39_RS01290;Name=yjgH;gbkey=Gene;gene=yjgH;gene_biotype=protein_coding;locus_tag=AD39_RS01290;old_locus_tag=AD39_4871 NZ_JJLH01000066.1 Protein Homology CDS 43883 44278 . - 0 ID=cds-WP_000230273.1;Parent=gene-AD39_RS01290;Dbxref=GenBank:WP_000230273.1;Name=WP_000230273.1;gbkey=CDS;gene=yjgH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313252.1;locus_tag=AD39_RS01290;product=RidA family protein;protein_id=WP_000230273.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 44409 45122 . - . ID=gene-AD39_RS01285;Name=bdcA;gbkey=Gene;gene=bdcA;gene_biotype=protein_coding;locus_tag=AD39_RS01285;old_locus_tag=AD39_4873 NZ_JJLH01000066.1 Protein Homology CDS 44409 45122 . - 0 ID=cds-WP_000500696.1;Parent=gene-AD39_RS01285;Dbxref=GenBank:WP_000500696.1;Name=WP_000500696.1;Ontology_term=GO:0016491;gbkey=CDS;gene=bdcA;go_function=oxidoreductase activity|0016491||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313253.1;locus_tag=AD39_RS01285;product=SDR family oxidoreductase;protein_id=WP_000500696.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 45193 45786 . + . ID=gene-AD39_RS01280;Name=bdcR;gbkey=Gene;gene=bdcR;gene_biotype=protein_coding;locus_tag=AD39_RS01280;old_locus_tag=AD39_4874 NZ_JJLH01000066.1 Protein Homology CDS 45193 45786 . + 0 ID=cds-WP_021292955.1;Parent=gene-AD39_RS01280;Dbxref=GenBank:WP_021292955.1;Name=WP_021292955.1;Ontology_term=GO:0006355,GO:0003677,GO:0003700;gbkey=CDS;gene=bdcR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313255.2;locus_tag=AD39_RS01280;product=TetR/AcrR family transcriptional regulator;protein_id=WP_021292955.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 45931 46383 . + . ID=gene-AD39_RS01275;Name=tabA;gbkey=Gene;gene=tabA;gene_biotype=protein_coding;locus_tag=AD39_RS01275;old_locus_tag=AD39_4876 NZ_JJLH01000066.1 Protein Homology CDS 45931 46383 . + 0 ID=cds-WP_001296694.1;Parent=gene-AD39_RS01275;Dbxref=GenBank:WP_001296694.1;Name=WP_001296694.1;gbkey=CDS;gene=tabA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313256.2;locus_tag=AD39_RS01275;product=toxin-antitoxin biofilm protein TabA;protein_id=WP_001296694.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 46506 47993 . + . ID=gene-AD39_RS01270;Name=AD39_RS01270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01270;old_locus_tag=AD39_4877 NZ_JJLH01000066.1 Protein Homology CDS 46506 47993 . + 0 ID=cds-WP_032283673.1;Parent=gene-AD39_RS01270;Dbxref=GenBank:WP_032283673.1;Name=WP_032283673.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001619071.1;locus_tag=AD39_RS01270;product=hypothetical protein;protein_id=WP_032283673.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 48094 49098 . - . ID=gene-AD39_RS01265;Name=argF;gbkey=Gene;gene=argF;gene_biotype=protein_coding;locus_tag=AD39_RS01265;old_locus_tag=AD39_4878 NZ_JJLH01000066.1 Protein Homology CDS 48094 49098 . - 0 ID=cds-WP_000012945.1;Parent=gene-AD39_RS01265;Dbxref=GenBank:WP_000012945.1;Name=WP_000012945.1;Ontology_term=GO:0042450,GO:0004585;gbkey=CDS;gene=argF;go_function=ornithine carbamoyltransferase activity|0004585||IEA;go_process=L-arginine biosynthetic process via ornithine|0042450||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313258.1;locus_tag=AD39_RS01265;product=ornithine carbamoyltransferase;protein_id=WP_000012945.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 49260 49676 . + . ID=gene-AD39_RS01260;Name=rraB;gbkey=Gene;gene=rraB;gene_biotype=protein_coding;locus_tag=AD39_RS01260;old_locus_tag=AD39_4879 NZ_JJLH01000066.1 Protein Homology CDS 49260 49676 . + 0 ID=cds-WP_000002953.1;Parent=gene-AD39_RS01260;Dbxref=GenBank:WP_000002953.1;Name=WP_000002953.1;gbkey=CDS;gene=rraB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313259.1;locus_tag=AD39_RS01260;product=ribonuclease E inhibitor RraB;protein_id=WP_000002953.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 49722 50225 . - . ID=gene-AD39_RS01255;Name=yjgM;gbkey=Gene;gene=yjgM;gene_biotype=protein_coding;locus_tag=AD39_RS01255;old_locus_tag=AD39_4880 NZ_JJLH01000066.1 Protein Homology CDS 49722 50225 . - 0 ID=cds-WP_032283674.1;Parent=gene-AD39_RS01255;Dbxref=GenBank:WP_032283674.1;Name=WP_032283674.1;Ontology_term=GO:0008080,GO:0016746;gbkey=CDS;gene=yjgM;go_function=N-acetyltransferase activity|0008080||IEA,acyltransferase activity|0016746||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026287.1;locus_tag=AD39_RS01255;product=GNAT family N-acetyltransferase;protein_id=WP_032283674.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 50418 51614 . + . ID=gene-AD39_RS01250;Name=yjgN;gbkey=Gene;gene=yjgN;gene_biotype=protein_coding;locus_tag=AD39_RS01250;old_locus_tag=AD39_4881 NZ_JJLH01000066.1 Protein Homology CDS 50418 51614 . + 0 ID=cds-WP_000079649.1;Parent=gene-AD39_RS01250;Dbxref=GenBank:WP_000079649.1;Name=WP_000079649.1;gbkey=CDS;gene=yjgN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709944.2;locus_tag=AD39_RS01250;product=YjgN family protein;protein_id=WP_000079649.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 51668 54523 . - . ID=gene-AD39_RS01245;Name=valS;gbkey=Gene;gene=valS;gene_biotype=protein_coding;locus_tag=AD39_RS01245;old_locus_tag=AD39_4882 NZ_JJLH01000066.1 Protein Homology CDS 51668 54523 . - 0 ID=cds-WP_001724290.1;Parent=gene-AD39_RS01245;Dbxref=GenBank:WP_001724290.1;Name=WP_001724290.1;Ontology_term=GO:0006438,GO:0000166,GO:0004832,GO:0005524;gbkey=CDS;gene=valS;go_function=nucleotide binding|0000166||IEA,valine-tRNA ligase activity|0004832||IEA,ATP binding|0005524||IEA;go_process=valyl-tRNA aminoacylation|0006438||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000416368.1;locus_tag=AD39_RS01245;product=valine--tRNA ligase;protein_id=WP_001724290.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 54523 54966 . - . ID=gene-AD39_RS01240;Name=holC;gbkey=Gene;gene=holC;gene_biotype=protein_coding;locus_tag=AD39_RS01240;old_locus_tag=AD39_4883 NZ_JJLH01000066.1 Protein Homology CDS 54523 54966 . - 0 ID=cds-WP_000786399.1;Parent=gene-AD39_RS01240;Dbxref=GenBank:WP_000786399.1;Name=WP_000786399.1;gbkey=CDS;gene=holC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004098129.1;locus_tag=AD39_RS01240;product=DNA polymerase III subunit chi;protein_id=WP_000786399.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 55320 56831 . - . ID=gene-AD39_RS01235;Name=pepA;gbkey=Gene;gene=pepA;gene_biotype=protein_coding;locus_tag=AD39_RS01235;old_locus_tag=AD39_4884 NZ_JJLH01000066.1 Protein Homology CDS 55320 56831 . - 0 ID=cds-WP_001426637.1;Parent=gene-AD39_RS01235;Dbxref=GenBank:WP_001426637.1;Name=WP_001426637.1;Ontology_term=GO:0006508,GO:0019538,GO:0030145,GO:0070006;gbkey=CDS;gene=pepA;go_function=manganese ion binding|0030145||IEA,metalloaminopeptidase activity|0070006||IEA;go_process=proteolysis|0006508||IEA,protein metabolic process|0019538||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313264.1;locus_tag=AD39_RS01235;product=leucyl aminopeptidase;protein_id=WP_001426637.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 56985 57035 . + . ID=gene-AD39_RS29885;Name=ytgA;gbkey=Gene;gene=ytgA;gene_biotype=protein_coding;locus_tag=AD39_RS29885 NZ_JJLH01000066.1 Protein Homology CDS 56985 57035 . + 0 ID=cds-WP_211180521.1;Parent=gene-AD39_RS29885;Dbxref=GenBank:WP_211180521.1;Name=WP_211180521.1;gbkey=CDS;gene=ytgA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051214.1;locus_tag=AD39_RS29885;product=protein YtgA;protein_id=WP_211180521.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 57098 58198 . + . ID=gene-AD39_RS01230;Name=lptF;gbkey=Gene;gene=lptF;gene_biotype=protein_coding;locus_tag=AD39_RS01230;old_locus_tag=AD39_4886 NZ_JJLH01000066.1 Protein Homology CDS 57098 58198 . + 0 ID=cds-WP_000584114.1;Parent=gene-AD39_RS01230;Dbxref=GenBank:WP_000584114.1;Name=WP_000584114.1;Ontology_term=GO:0055085,GO:0015221,GO:0043190;gbkey=CDS;gene=lptF;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313265.1;locus_tag=AD39_RS01230;product=LPS export ABC transporter permease LptF;protein_id=WP_000584114.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 58198 59280 . + . ID=gene-AD39_RS01225;Name=lptG;gbkey=Gene;gene=lptG;gene_biotype=protein_coding;locus_tag=AD39_RS01225;old_locus_tag=AD39_4887 NZ_JJLH01000066.1 Protein Homology CDS 58198 59280 . + 0 ID=cds-WP_001295681.1;Parent=gene-AD39_RS01225;Dbxref=GenBank:WP_001295681.1;Name=WP_001295681.1;Ontology_term=GO:0055085,GO:0015221,GO:0043190;gbkey=CDS;gene=lptG;go_component=ATP-binding cassette (ABC) transporter complex|0043190||IEA;go_function=lipopolysaccharide transmembrane transporter activity|0015221||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313266.2;locus_tag=AD39_RS01225;product=LPS export ABC transporter permease LptG;protein_id=WP_001295681.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 59399 60901 . - . ID=gene-AD39_RS01220;Name=yjgR;gbkey=Gene;gene=yjgR;gene_biotype=protein_coding;locus_tag=AD39_RS01220;old_locus_tag=AD39_4888 NZ_JJLH01000066.1 Protein Homology CDS 59399 60901 . - 0 ID=cds-WP_001534002.1;Parent=gene-AD39_RS01220;Dbxref=GenBank:WP_001534002.1;Name=WP_001534002.1;Ontology_term=GO:0005524;gbkey=CDS;gene=yjgR;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313267.1;locus_tag=AD39_RS01220;product=helicase HerA-like C-terminal domain-containing protein;protein_id=WP_001534002.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 61031 62050 . - . ID=gene-AD39_RS01215;Name=ahr;gbkey=Gene;gene=ahr;gene_biotype=protein_coding;locus_tag=AD39_RS01215;old_locus_tag=AD39_4889 NZ_JJLH01000066.1 Protein Homology CDS 61031 62050 . - 0 ID=cds-WP_032286138.1;Parent=gene-AD39_RS01215;Dbxref=GenBank:WP_032286138.1;Name=WP_032286138.1;Ontology_term=GO:0006631,GO:0008106,GO:0016616;gbkey=CDS;gene=ahr;go_function=alcohol dehydrogenase (NADP+) activity|0008106||IEA,oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor|0016616||IEA;go_process=fatty acid metabolic process|0006631||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418690.4;locus_tag=AD39_RS01215;product=NADPH-dependent aldehyde reductase Ahr;protein_id=WP_032286138.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 62246 62330 . + . ID=gene-AD39_RS01210;Name=AD39_RS01210;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS01210;old_locus_tag=AD39_4890 NZ_JJLH01000066.1 tRNAscan-SE tRNA 62246 62330 . + . ID=rna-AD39_RS01210;Parent=gene-AD39_RS01210;anticodon=(pos:62280..62282);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS01210;product=tRNA-Leu NZ_JJLH01000066.1 tRNAscan-SE exon 62246 62330 . + . ID=exon-AD39_RS01210-1;Parent=rna-AD39_RS01210;anticodon=(pos:62280..62282);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS01210;product=tRNA-Leu NZ_JJLH01000066.1 RefSeq gene 62421 64331 . + . ID=gene-AD39_RS01205;Name=AD39_RS01205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01205;old_locus_tag=AD39_4891 NZ_JJLH01000066.1 Protein Homology CDS 62421 64331 . + 0 ID=cds-WP_032283678.1;Parent=gene-AD39_RS01205;Dbxref=GenBank:WP_032283678.1;Name=WP_032283678.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313269.1;locus_tag=AD39_RS01205;product=site-specific integrase;protein_id=WP_032283678.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 64464 64796 . - . ID=gene-AD39_RS0125750;Name=AD39_RS0125750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125750;old_locus_tag=AD39_4892 NZ_JJLH01000066.1 Protein Homology CDS 64464 64796 . - 0 ID=cds-WP_001353500.1;Parent=gene-AD39_RS0125750;Dbxref=GenBank:WP_001353500.1;Name=WP_001353500.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313273.1;locus_tag=AD39_RS0125750;product=NIPSNAP family protein;protein_id=WP_001353500.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 65800 66267 . - . ID=gene-AD39_RS0125760;Name=AD39_RS0125760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125760 NZ_JJLH01000066.1 Protein Homology CDS 65800 66267 . - 0 ID=cds-WP_000588537.1;Parent=gene-AD39_RS0125760;Dbxref=GenBank:WP_000588537.1;Name=WP_000588537.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313275.1;locus_tag=AD39_RS0125760;product=DUF1643 domain-containing protein;protein_id=WP_000588537.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 66458 67018 . + . ID=gene-AD39_RS01200;Name=AD39_RS01200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01200;old_locus_tag=AD39_4895 NZ_JJLH01000066.1 Protein Homology CDS 66458 67018 . + 0 ID=cds-WP_001395248.1;Parent=gene-AD39_RS01200;Dbxref=GenBank:WP_001395248.1;Name=WP_001395248.1;Ontology_term=GO:0006310,GO:0015074,GO:0000150,GO:0003677;gbkey=CDS;go_function=DNA strand exchange activity|0000150||IEA,DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001455700.1;locus_tag=AD39_RS01200;product=recombinase family protein;protein_id=WP_001395248.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 67032 67880 . + . ID=gene-AD39_RS01195;Name=AD39_RS01195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01195;old_locus_tag=AD39_4896 NZ_JJLH01000066.1 Protein Homology CDS 67032 67880 . + 0 ID=cds-WP_000331919.1;Parent=gene-AD39_RS01195;Dbxref=GenBank:WP_000331919.1;Name=WP_000331919.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008815336.1;locus_tag=AD39_RS01195;product=hypothetical protein;protein_id=WP_000331919.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 67931 68428 . - . ID=gene-AD39_RS0125765;Name=AD39_RS0125765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125765;old_locus_tag=AD39_4897 NZ_JJLH01000066.1 Protein Homology CDS 67931 68428 . - 0 ID=cds-WP_000148193.1;Parent=gene-AD39_RS0125765;Dbxref=GenBank:WP_000148193.1;Name=WP_000148193.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001691323.1;locus_tag=AD39_RS0125765;product=hypothetical protein;protein_id=WP_000148193.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 68669 69133 . + . ID=gene-AD39_RS01190;Name=AD39_RS01190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01190;old_locus_tag=AD39_4898 NZ_JJLH01000066.1 Protein Homology CDS 68669 69133 . + 0 ID=cds-WP_000749342.1;Parent=gene-AD39_RS01190;Dbxref=GenBank:WP_000749342.1;Name=WP_000749342.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000749342.1;locus_tag=AD39_RS01190;product=helix-turn-helix domain-containing protein;protein_id=WP_000749342.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 69835 71079 . + . ID=gene-AD39_RS01185;Name=AD39_RS01185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01185;old_locus_tag=AD39_4900 NZ_JJLH01000066.1 Protein Homology CDS 69835 71079 . + 0 ID=cds-WP_001218948.1;Parent=gene-AD39_RS01185;Dbxref=GenBank:WP_001218948.1;Name=WP_001218948.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001218945.1;locus_tag=AD39_RS01185;product=tyrosine-type recombinase/integrase;protein_id=WP_001218948.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 71620 72471 . + . ID=gene-AD39_RS26100;Name=AD39_RS26100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS26100;old_locus_tag=AD39_4901 NZ_JJLH01000066.1 Protein Homology CDS 71620 72471 . + 0 ID=cds-WP_001446456.1;Parent=gene-AD39_RS26100;Dbxref=GenBank:WP_001446456.1;Name=WP_001446456.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001446456.1;locus_tag=AD39_RS26100;product=hypothetical protein;protein_id=WP_001446456.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 72545 73795 . + . ID=gene-AD39_RS01180;Name=dpdA;gbkey=Gene;gene=dpdA;gene_biotype=protein_coding;locus_tag=AD39_RS01180;old_locus_tag=AD39_4902 NZ_JJLH01000066.1 Protein Homology CDS 72545 73795 . + 0 ID=cds-WP_000040320.1;Parent=gene-AD39_RS01180;Dbxref=GenBank:WP_000040320.1;Name=WP_000040320.1;Ontology_term=GO:0006400,GO:0016757;gbkey=CDS;gene=dpdA;go_function=glycosyltransferase activity|0016757||IEA;go_process=tRNA modification|0006400||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000040320.1;locus_tag=AD39_RS01180;product=tRNA-guanine transglycosylase DpdA;protein_id=WP_000040320.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 73792 74925 . + . ID=gene-AD39_RS01175;Name=dbpB;gbkey=Gene;gene=dbpB;gene_biotype=protein_coding;locus_tag=AD39_RS01175;old_locus_tag=AD39_4903 NZ_JJLH01000066.1 Protein Homology CDS 73792 74925 . + 0 ID=cds-WP_000006271.1;Parent=gene-AD39_RS01175;Dbxref=GenBank:WP_000006271.1;Name=WP_000006271.1;gbkey=CDS;gene=dbpB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000006271.1;locus_tag=AD39_RS01175;product=DGQHR domain-containing protein DpdB;protein_id=WP_000006271.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 75242 78298 . + . ID=gene-AD39_RS01170;Name=dpdE;gbkey=Gene;gene=dpdE;gene_biotype=protein_coding;locus_tag=AD39_RS01170;old_locus_tag=AD39_4904 NZ_JJLH01000066.1 Protein Homology CDS 75242 78298 . + 0 ID=cds-WP_001315988.1;Parent=gene-AD39_RS01170;Dbxref=GenBank:WP_001315988.1;Name=WP_001315988.1;Ontology_term=GO:0005524;gbkey=CDS;gene=dpdE;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001315988.1;locus_tag=AD39_RS01170;product=protein DpdE;protein_id=WP_001315988.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 78311 80761 . + . ID=gene-AD39_RS01165;Name=dpdF;gbkey=Gene;gene=dpdF;gene_biotype=protein_coding;locus_tag=AD39_RS01165;old_locus_tag=AD39_4905 NZ_JJLH01000066.1 Protein Homology CDS 78311 80761 . + 0 ID=cds-WP_000431483.1;Parent=gene-AD39_RS01165;Dbxref=GenBank:WP_000431483.1;Name=WP_000431483.1;Ontology_term=GO:0003676;gbkey=CDS;gene=dpdF;go_function=nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001498743.1;locus_tag=AD39_RS01165;product=protein DpdF;protein_id=WP_000431483.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 80761 81660 . + . ID=gene-AD39_RS29540;Name=dpdG;gbkey=Gene;gene=dpdG;gene_biotype=protein_coding;locus_tag=AD39_RS29540;old_locus_tag=AD39_4906 NZ_JJLH01000066.1 Protein Homology CDS 80761 81660 . + 0 ID=cds-WP_001018786.1;Parent=gene-AD39_RS29540;Dbxref=GenBank:WP_001018786.1;Name=WP_001018786.1;gbkey=CDS;gene=dpdG;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001018785.1;locus_tag=AD39_RS29540;product=protein DpdG;protein_id=WP_001018786.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 81663 84806 . + . ID=gene-AD39_RS01155;Name=dpdH;gbkey=Gene;gene=dpdH;gene_biotype=protein_coding;locus_tag=AD39_RS01155;old_locus_tag=AD39_4907 NZ_JJLH01000066.1 Protein Homology CDS 81663 84806 . + 0 ID=cds-WP_000575285.1;Parent=gene-AD39_RS01155;Dbxref=GenBank:WP_000575285.1;Name=WP_000575285.1;gbkey=CDS;gene=dpdH;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001575924.1;locus_tag=AD39_RS01155;product=protein DpdH;protein_id=WP_000575285.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 84793 85527 . + . ID=gene-AD39_RS01150;Name=dpdI;gbkey=Gene;gene=dpdI;gene_biotype=protein_coding;locus_tag=AD39_RS01150;old_locus_tag=AD39_4908 NZ_JJLH01000066.1 Protein Homology CDS 84793 85527 . + 0 ID=cds-WP_000209422.1;Parent=gene-AD39_RS01150;Dbxref=GenBank:WP_000209422.1;Name=WP_000209422.1;gbkey=CDS;gene=dpdI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000209422.1;locus_tag=AD39_RS01150;product=protein DpdI;protein_id=WP_000209422.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 85527 90041 . + . ID=gene-AD39_RS01145;Name=dpdJ;gbkey=Gene;gene=dpdJ;gene_biotype=protein_coding;locus_tag=AD39_RS01145;old_locus_tag=AD39_4909 NZ_JJLH01000066.1 Protein Homology CDS 85527 90041 . + 0 ID=cds-WP_032287664.1;Parent=gene-AD39_RS01145;Dbxref=GenBank:WP_032287664.1;Name=WP_032287664.1;Ontology_term=GO:0003676;gbkey=CDS;gene=dpdJ;go_function=nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001497987.1;locus_tag=AD39_RS01145;product=protein DpdJ;protein_id=WP_032287664.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 90038 90583 . + . ID=gene-AD39_RS01140;Name=dpdK;gbkey=Gene;gene=dpdK;gene_biotype=protein_coding;locus_tag=AD39_RS01140;old_locus_tag=AD39_4910 NZ_JJLH01000066.1 Protein Homology CDS 90038 90583 . + 0 ID=cds-WP_000580210.1;Parent=gene-AD39_RS01140;Dbxref=GenBank:WP_000580210.1;Name=WP_000580210.1;gbkey=CDS;gene=dpdK;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000580209.1;locus_tag=AD39_RS01140;product=phospholipase D-like domain-containing protein DpdK;protein_id=WP_000580210.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 90583 92754 . + . ID=gene-AD39_RS01135;Name=dpdD;gbkey=Gene;gene=dpdD;gene_biotype=protein_coding;locus_tag=AD39_RS01135;old_locus_tag=AD39_4911 NZ_JJLH01000066.1 Protein Homology CDS 90583 92754 . + 0 ID=cds-WP_000332368.1;Parent=gene-AD39_RS01135;Dbxref=GenBank:WP_000332368.1;Name=WP_000332368.1;gbkey=CDS;gene=dpdD;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001567242.1;locus_tag=AD39_RS01135;product=protein DpdD;protein_id=WP_000332368.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 93017 93379 . - . ID=gene-AD39_RS01130;Name=queD;gbkey=Gene;gene=queD;gene_biotype=protein_coding;locus_tag=AD39_RS01130;old_locus_tag=AD39_4912 NZ_JJLH01000066.1 Protein Homology CDS 93017 93379 . - 0 ID=cds-WP_000859003.1;Parent=gene-AD39_RS01130;Dbxref=GenBank:WP_000859003.1;Name=WP_000859003.1;Ontology_term=GO:0008616,GO:0003824;gbkey=CDS;gene=queD;go_function=catalytic activity|0003824||IEA;go_process=queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_708563.2;locus_tag=AD39_RS01130;product=6-carboxytetrahydropterin synthase QueD;protein_id=WP_000859003.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 93630 94019 . - . ID=gene-AD39_RS28015;Name=AD39_RS28015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28015;old_locus_tag=AD39_4913 NZ_JJLH01000066.1 Protein Homology CDS 93630 94019 . - 0 ID=cds-WP_001315990.1;Parent=gene-AD39_RS28015;Dbxref=GenBank:WP_001315990.1;Name=WP_001315990.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001498746.1;locus_tag=AD39_RS28015;product=putative zinc ribbon protein;protein_id=WP_001315990.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 94190 94294 . - . ID=gene-AD39_RS28020;Name=AD39_RS28020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28020 NZ_JJLH01000066.1 Protein Homology CDS 94190 94294 . - 0 ID=cds-WP_001315991.1;Parent=gene-AD39_RS28020;Dbxref=GenBank:WP_001315991.1;Name=WP_001315991.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF023154.6;locus_tag=AD39_RS28020;product=YagK/YfjJ domain-containing protein;protein_id=WP_001315991.1;transl_table=11 NZ_JJLH01000066.1 RefSeq pseudogene 94296 95087 . + . ID=gene-AD39_RS0125780;Name=AD39_RS0125780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125780;old_locus_tag=AD39_4914;partial=true;pseudo=true;start_range=.,94296 NZ_JJLH01000066.1 Protein Homology CDS 94296 95087 . + 0 ID=cds-AD39_RS0125780;Parent=gene-AD39_RS0125780;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004389801.1;locus_tag=AD39_RS0125780;partial=true;product=IS30-like element IS30 family transposase;pseudo=true;start_range=.,94296;transl_table=11 NZ_JJLH01000066.1 RefSeq pseudogene 95100 95357 . - . ID=gene-AD39_RS0125785;Name=AD39_RS0125785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125785;partial=true;pseudo=true;start_range=.,95100 NZ_JJLH01000066.1 Protein Homology CDS 95100 95357 . - 0 ID=cds-AD39_RS0125785;Parent=gene-AD39_RS0125785;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;Ontology_term=GO:0006313,GO:0003677,GO:0004803;gbkey=CDS;go_function=DNA binding|0003677||IEA,transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611483.1;locus_tag=AD39_RS0125785;partial=true;product=transposase;pseudo=true;start_range=.,95100;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 95504 95761 . + . ID=gene-AD39_RS0125790;Name=AD39_RS0125790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125790 NZ_JJLH01000066.1 GeneMarkS-2+ CDS 95504 95761 . + 0 ID=cds-WP_000177057.1;Parent=gene-AD39_RS0125790;Dbxref=GenBank:WP_000177057.1;Name=WP_000177057.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS0125790;product=hypothetical protein;protein_id=WP_000177057.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 96319 97086 . - . ID=gene-AD39_RS0125795;Name=fecE;gbkey=Gene;gene=fecE;gene_biotype=protein_coding;locus_tag=AD39_RS0125795;old_locus_tag=AD39_4916 NZ_JJLH01000066.1 Protein Homology CDS 96319 97086 . - 0 ID=cds-WP_001385328.1;Parent=gene-AD39_RS0125795;Dbxref=GenBank:WP_001385328.1;Name=WP_001385328.1;Ontology_term=GO:0005524;gbkey=CDS;gene=fecE;go_function=ATP binding|0005524||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418707.1;locus_tag=AD39_RS0125795;product=Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;protein_id=WP_001385328.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 97087 98043 . - . ID=gene-AD39_RS01125;Name=fecD;gbkey=Gene;gene=fecD;gene_biotype=protein_coding;locus_tag=AD39_RS01125;old_locus_tag=AD39_4918 NZ_JJLH01000066.1 Protein Homology CDS 97087 98043 . - 0 ID=cds-WP_000684856.1;Parent=gene-AD39_RS01125;Dbxref=GenBank:WP_000684856.1;Name=WP_000684856.1;gbkey=CDS;gene=fecD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418708.1;locus_tag=AD39_RS01125;product=Fe(3+) dicitrate ABC transporter permease subunit FecD;protein_id=WP_000684856.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 98040 99038 . - . ID=gene-AD39_RS01120;Name=fecC;gbkey=Gene;gene=fecC;gene_biotype=protein_coding;locus_tag=AD39_RS01120;old_locus_tag=AD39_4919 NZ_JJLH01000066.1 Protein Homology CDS 98040 99038 . - 0 ID=cds-WP_000125187.1;Parent=gene-AD39_RS01120;Dbxref=GenBank:WP_000125187.1;Name=WP_000125187.1;gbkey=CDS;gene=fecC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418709.1;locus_tag=AD39_RS01120;product=iron-dicitrate ABC transporter permease FecC;protein_id=WP_000125187.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 99035 99937 . - . ID=gene-AD39_RS01115;Name=fecB;gbkey=Gene;gene=fecB;gene_biotype=protein_coding;locus_tag=AD39_RS01115;old_locus_tag=AD39_4920 NZ_JJLH01000066.1 Protein Homology CDS 99035 99937 . - 0 ID=cds-WP_001534011.1;Parent=gene-AD39_RS01115;Dbxref=GenBank:WP_001534011.1;Name=WP_001534011.1;gbkey=CDS;gene=fecB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418710.4;locus_tag=AD39_RS01115;product=Fe(3+) dicitrate ABC transporter substrate-binding protein FecB;protein_id=WP_001534011.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 99982 102306 . - . ID=gene-AD39_RS01110;Name=fecA;gbkey=Gene;gene=fecA;gene_biotype=protein_coding;locus_tag=AD39_RS01110;old_locus_tag=AD39_4921 NZ_JJLH01000066.1 Protein Homology CDS 99982 102306 . - 0 ID=cds-WP_032287665.1;Parent=gene-AD39_RS01110;Dbxref=GenBank:WP_032287665.1;Name=WP_032287665.1;gbkey=CDS;gene=fecA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418711.1;locus_tag=AD39_RS01110;product=TonB-dependent Fe(3+) dicitrate receptor FecA;protein_id=WP_032287665.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 102393 103346 . - . ID=gene-AD39_RS01105;Name=fecR;gbkey=Gene;gene=fecR;gene_biotype=protein_coding;locus_tag=AD39_RS01105;old_locus_tag=AD39_4922 NZ_JJLH01000066.1 Protein Homology CDS 102393 103346 . - 0 ID=cds-WP_001068910.1;Parent=gene-AD39_RS01105;Dbxref=GenBank:WP_001068910.1;Name=WP_001068910.1;gbkey=CDS;gene=fecR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418712.1;locus_tag=AD39_RS01105;product=ferric citrate uptake sigma factor regulator FecR;protein_id=WP_001068910.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 103343 103864 . - . ID=gene-AD39_RS01100;Name=fecI;gbkey=Gene;gene=fecI;gene_biotype=protein_coding;locus_tag=AD39_RS01100;old_locus_tag=AD39_4923 NZ_JJLH01000066.1 Protein Homology CDS 103343 103864 . - 0 ID=cds-WP_001283626.1;Parent=gene-AD39_RS01100;Dbxref=GenBank:WP_001283626.1;Name=WP_001283626.1;gbkey=CDS;gene=fecI;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418713.1;locus_tag=AD39_RS01100;product=RNA polymerase sigma factor FecI;protein_id=WP_001283626.1;transl_table=11 NZ_JJLH01000066.1 RefSeq gene 104001 104069 . + . ID=gene-AD39_RS29890;Name=ykiE;gbkey=Gene;gene=ykiE;gene_biotype=protein_coding;locus_tag=AD39_RS29890 NZ_JJLH01000066.1 Protein Homology CDS 104001 104069 . + 0 ID=cds-WP_211180522.1;Parent=gene-AD39_RS29890;Dbxref=GenBank:WP_211180522.1;Name=WP_211180522.1;gbkey=CDS;gene=ykiE;inference=COORDINATES: similar to AA sequence:RefSeq:YP_010051215.1;locus_tag=AD39_RS29890;product=protein YkiE;protein_id=WP_211180522.1;transl_table=11 NZ_JJLH01000066.1 RefSeq pseudogene 104156 104774 . + . ID=gene-AD39_RS28785;Name=AD39_RS28785;end_range=104774,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28785;partial=true;pseudo=true NZ_JJLH01000066.1 Protein Homology CDS 104156 104774 . + 0 ID=cds-AD39_RS28785;Parent=gene-AD39_RS28785;Note=frameshifted%3B incomplete%3B missing C-terminus;Ontology_term=GO:0004803;end_range=104774,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612230.1;locus_tag=AD39_RS28785;partial=true;product=IS1 family transposase;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000067.1 1 19643 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000067.1 RefSeq region 1 19643 . + . ID=NZ_JJLH01000067.1:1..19643;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000067.1 RefSeq gene 204 1184 . + . ID=gene-AD39_RS01090;Name=AD39_RS01090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01090;old_locus_tag=AD39_4927 NZ_JJLH01000067.1 Protein Homology CDS 204 1184 . + 0 ID=cds-WP_000399648.1-3;Parent=gene-AD39_RS01090;Dbxref=GenBank:WP_000399648.1;Name=WP_000399648.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904434.1;locus_tag=AD39_RS01090;product=IS110-like element IS621 family transposase;protein_id=WP_000399648.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 1433 2302 . - . ID=gene-AD39_RS01085;Name=AD39_RS01085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01085;old_locus_tag=AD39_4929 NZ_JJLH01000067.1 Protein Homology CDS 1433 2302 . - 0 ID=cds-WP_001008073.1;Parent=gene-AD39_RS01085;Dbxref=GenBank:WP_001008073.1;Name=WP_001008073.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710010.2;locus_tag=AD39_RS01085;product=YjeJ family protein;protein_id=WP_001008073.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 2692 3720 . - . ID=gene-AD39_RS01080;Name=epmB;gbkey=Gene;gene=epmB;gene_biotype=protein_coding;locus_tag=AD39_RS01080;old_locus_tag=AD39_4930 NZ_JJLH01000067.1 Protein Homology CDS 2692 3720 . - 0 ID=cds-WP_000940530.1;Parent=gene-AD39_RS01080;Dbxref=GenBank:WP_000940530.1;Name=WP_000940530.1;gbkey=CDS;gene=epmB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710013.1;locus_tag=AD39_RS01080;product=EF-P beta-lysylation protein EpmB;protein_id=WP_000940530.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 3762 4328 . + . ID=gene-AD39_RS01075;Name=efp;gbkey=Gene;gene=efp;gene_biotype=protein_coding;locus_tag=AD39_RS01075;old_locus_tag=AD39_4931 NZ_JJLH01000067.1 Protein Homology CDS 3762 4328 . + 0 ID=cds-WP_000257278.1;Parent=gene-AD39_RS01075;Dbxref=GenBank:WP_000257278.1;Name=WP_000257278.1;Ontology_term=GO:0006414,GO:0003746,GO:0005737;gbkey=CDS;gene=efp;go_component=cytoplasm|0005737||IEA;go_function=translation elongation factor activity|0003746||IEA;go_process=translational elongation|0006414||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_004871142.1;locus_tag=AD39_RS01075;product=elongation factor P;protein_id=WP_000257278.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 4380 4505 . + . ID=gene-AD39_RS01070;Name=ecnA;gbkey=Gene;gene=ecnA;gene_biotype=protein_coding;locus_tag=AD39_RS01070;old_locus_tag=AD39_4932 NZ_JJLH01000067.1 Protein Homology CDS 4380 4505 . + 0 ID=cds-WP_000977757.1;Parent=gene-AD39_RS01070;Dbxref=GenBank:WP_000977757.1;Name=WP_000977757.1;gbkey=CDS;gene=ecnA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026283.1;locus_tag=AD39_RS01070;product=lipoprotein antitoxin entericidin A;protein_id=WP_000977757.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 4616 4762 . + . ID=gene-AD39_RS01065;Name=ecnB;gbkey=Gene;gene=ecnB;gene_biotype=protein_coding;locus_tag=AD39_RS01065;old_locus_tag=AD39_4933 NZ_JJLH01000067.1 Protein Homology CDS 4616 4762 . + 0 ID=cds-WP_000239596.1;Parent=gene-AD39_RS01065;Dbxref=GenBank:WP_000239596.1;Name=WP_000239596.1;gbkey=CDS;gene=ecnB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710016.1;locus_tag=AD39_RS01065;product=lipoprotein toxin entericidin B;protein_id=WP_000239596.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 4944 5261 . + . ID=gene-AD39_RS01060;Name=sugE;gbkey=Gene;gene=sugE;gene_biotype=protein_coding;locus_tag=AD39_RS01060;old_locus_tag=AD39_4934 NZ_JJLH01000067.1 Protein Homology CDS 4944 5261 . + 0 ID=cds-WP_000118482.1;Parent=gene-AD39_RS01060;Dbxref=GenBank:WP_000118482.1;Name=WP_000118482.1;Ontology_term=GO:0022857,GO:0016020;gbkey=CDS;gene=sugE;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418572.4;locus_tag=AD39_RS01060;product=quaternary ammonium compound efflux SMR transporter SugE;protein_id=WP_000118482.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 5258 5791 . - . ID=gene-AD39_RS01055;Name=blc;gbkey=Gene;gene=blc;gene_biotype=protein_coding;locus_tag=AD39_RS01055;old_locus_tag=AD39_4935 NZ_JJLH01000067.1 Protein Homology CDS 5258 5791 . - 0 ID=cds-WP_001238378.1;Parent=gene-AD39_RS01055;Dbxref=GenBank:WP_001238378.1;Name=WP_001238378.1;gbkey=CDS;gene=blc;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313157.1;locus_tag=AD39_RS01055;product=lipocalin Blc;protein_id=WP_001238378.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 5880 7013 . - . ID=gene-AD39_RS01050;Name=AD39_RS01050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS01050;old_locus_tag=AD39_4936 NZ_JJLH01000067.1 Protein Homology CDS 5880 7013 . - 0 ID=cds-WP_001352591.1;Parent=gene-AD39_RS01050;Dbxref=GenBank:WP_001352591.1;Name=WP_001352591.1;Ontology_term=GO:0008800;gbkey=CDS;go_function=beta-lactamase activity|0008800||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001336292.1;locus_tag=AD39_RS01050;product=BlaEC family class C beta-lactamase;protein_id=WP_001352591.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 7076 7435 . - . ID=gene-AD39_RS01045;Name=frdD;gbkey=Gene;gene=frdD;gene_biotype=protein_coding;locus_tag=AD39_RS01045;old_locus_tag=AD39_4937 NZ_JJLH01000067.1 Protein Homology CDS 7076 7435 . - 0 ID=cds-WP_032287666.1;Parent=gene-AD39_RS01045;Dbxref=GenBank:WP_032287666.1;Name=WP_032287666.1;gbkey=CDS;gene=frdD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313159.1;locus_tag=AD39_RS01045;product=fumarate reductase subunit FrdD;protein_id=WP_032287666.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 7446 7841 . - . ID=gene-AD39_RS01040;Name=frdC;gbkey=Gene;gene=frdC;gene_biotype=protein_coding;locus_tag=AD39_RS01040;old_locus_tag=AD39_4938 NZ_JJLH01000067.1 Protein Homology CDS 7446 7841 . - 0 ID=cds-WP_000208757.1;Parent=gene-AD39_RS01040;Dbxref=GenBank:WP_000208757.1;Name=WP_000208757.1;Ontology_term=GO:0016020;gbkey=CDS;gene=frdC;go_component=membrane|0016020||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313160.1;locus_tag=AD39_RS01040;product=fumarate reductase subunit FrdC;protein_id=WP_000208757.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 7852 8586 . - . ID=gene-AD39_RS01035;Name=frdB;gbkey=Gene;gene=frdB;gene_biotype=protein_coding;locus_tag=AD39_RS01035;old_locus_tag=AD39_4939 NZ_JJLH01000067.1 Protein Homology CDS 7852 8586 . - 0 ID=cds-WP_000829498.1;Parent=gene-AD39_RS01035;Dbxref=GenBank:WP_000829498.1;Name=WP_000829498.1;gbkey=CDS;gene=frdB;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882957.1;locus_tag=AD39_RS01035;product=fumarate reductase iron-sulfur protein;protein_id=WP_000829498.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 8579 10387 . - . ID=gene-AD39_RS01030;Name=frdA;gbkey=Gene;gene=frdA;gene_biotype=protein_coding;locus_tag=AD39_RS01030;old_locus_tag=AD39_4940 NZ_JJLH01000067.1 Protein Homology CDS 8579 10387 . - 0 ID=cds-WP_001504989.1;Parent=gene-AD39_RS01030;Dbxref=GenBank:WP_001504989.1;Name=WP_001504989.1;Ontology_term=GO:0009061,GO:0022900,GO:0016491,GO:0050660;gbkey=CDS;gene=frdA;go_function=oxidoreductase activity|0016491||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=anaerobic respiration|0009061||IEA,electron transport chain|0022900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418578.1;locus_tag=AD39_RS01030;product=fumarate reductase (quinol) flavoprotein subunit;protein_id=WP_001504989.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 10712 11689 . + . ID=gene-AD39_RS01025;Name=epmA;gbkey=Gene;gene=epmA;gene_biotype=protein_coding;locus_tag=AD39_RS01025;old_locus_tag=AD39_4941 NZ_JJLH01000067.1 Protein Homology CDS 10712 11689 . + 0 ID=cds-WP_000004771.1;Parent=gene-AD39_RS01025;Dbxref=GenBank:WP_000004771.1;Name=WP_000004771.1;Ontology_term=GO:0006418,GO:0004812;gbkey=CDS;gene=epmA;go_function=aminoacyl-tRNA ligase activity|0004812||IEA;go_process=tRNA aminoacylation for protein translation|0006418||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000004771.1;locus_tag=AD39_RS01025;product=elongation factor P--(R)-beta-lysine ligase;protein_id=WP_000004771.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 11908 13410 . + . ID=gene-AD39_RS01020;Name=yjeM;gbkey=Gene;gene=yjeM;gene_biotype=protein_coding;locus_tag=AD39_RS01020;old_locus_tag=AD39_4942 NZ_JJLH01000067.1 Protein Homology CDS 11908 13410 . + 0 ID=cds-WP_032283629.1;Parent=gene-AD39_RS01020;Dbxref=GenBank:WP_032283629.1;Name=WP_032283629.1;Ontology_term=GO:0022857;gbkey=CDS;gene=yjeM;go_function=transmembrane transporter activity|0022857||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418580.2;locus_tag=AD39_RS01020;product=glutamate/gamma-aminobutyrate family transporter YjeM;protein_id=WP_032283629.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 13561 16884 . - . ID=gene-AD39_RS01015;Name=mscM;gbkey=Gene;gene=mscM;gene_biotype=protein_coding;locus_tag=AD39_RS01015;old_locus_tag=AD39_4943 NZ_JJLH01000067.1 Protein Homology CDS 13561 16884 . - 0 ID=cds-WP_001236813.1;Parent=gene-AD39_RS01015;Dbxref=GenBank:WP_001236813.1;Name=WP_001236813.1;Ontology_term=GO:0055085,GO:0016020;gbkey=CDS;gene=mscM;go_component=membrane|0016020||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418583.1;locus_tag=AD39_RS01015;product=miniconductance mechanosensitive channel MscM;protein_id=WP_001236813.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 16906 17874 . - . ID=gene-AD39_RS01010;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=AD39_RS01010;old_locus_tag=AD39_4944 NZ_JJLH01000067.1 Protein Homology CDS 16906 17874 . - 0 ID=cds-WP_032283628.1;Parent=gene-AD39_RS01010;Dbxref=GenBank:WP_032283628.1;Name=WP_032283628.1;Note=Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein.;Ontology_term=GO:0008654,GO:0004609;gbkey=CDS;gene=asd;go_function=phosphatidylserine decarboxylase activity|0004609||IEA;go_process=phospholipid biosynthetic process|0008654||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313166.1;locus_tag=AD39_RS01010;product=archaetidylserine decarboxylase;protein_id=WP_032283628.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 17971 19023 . - . ID=gene-AD39_RS01005;Name=rsgA;gbkey=Gene;gene=rsgA;gene_biotype=protein_coding;locus_tag=AD39_RS01005;old_locus_tag=AD39_4945 NZ_JJLH01000067.1 Protein Homology CDS 17971 19023 . - 0 ID=cds-WP_000041970.1;Parent=gene-AD39_RS01005;Dbxref=GenBank:WP_000041970.1;Name=WP_000041970.1;Ontology_term=GO:0003924,GO:0005525;gbkey=CDS;gene=rsgA;go_function=GTPase activity|0003924||IEA,GTP binding|0005525||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313167.2;locus_tag=AD39_RS01005;product=small ribosomal subunit biogenesis GTPase RsgA;protein_id=WP_000041970.1;transl_table=11 NZ_JJLH01000067.1 RefSeq gene 19118 19643 . + . ID=gene-AD39_RS01000;Name=orn;end_range=19643,.;gbkey=Gene;gene=orn;gene_biotype=protein_coding;locus_tag=AD39_RS01000;old_locus_tag=AD39_4946;partial=true NZ_JJLH01000067.1 Protein Homology CDS 19118 19643 . + 0 ID=cds-WP_032287667.1;Parent=gene-AD39_RS01000;Dbxref=GenBank:WP_032287667.1;Name=WP_032287667.1;Ontology_term=GO:0000175,GO:0003676;end_range=19643,.;gbkey=CDS;gene=orn;go_function=3'-5'-RNA exonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882950.1;locus_tag=AD39_RS01000;partial=true;product=oligoribonuclease;protein_id=WP_032287667.1;transl_table=11 ##sequence-region NZ_JJLH01000068.1 1 1064 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000068.1 RefSeq region 1 1064 . + . ID=NZ_JJLH01000068.1:1..1064;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000068.1 RefSeq gene 106 702 . + . ID=gene-AD39_RS00995;Name=fimE;gbkey=Gene;gene=fimE;gene_biotype=protein_coding;locus_tag=AD39_RS00995;old_locus_tag=AD39_4947 NZ_JJLH01000068.1 Protein Homology CDS 106 702 . + 0 ID=cds-WP_000044711.1-2;Parent=gene-AD39_RS00995;Dbxref=GenBank:WP_000044711.1;Name=WP_000044711.1;Note=upgraded from regulatory protein to switch DNA invertase;gbkey=CDS;gene=fimE;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418733.1;locus_tag=AD39_RS00995;product=type 1 fimbria switch DNA invertase FimE;protein_id=WP_000044711.1;transl_table=11 ##sequence-region NZ_JJLH01000069.1 1 102834 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000069.1 RefSeq region 1 102834 . + . ID=NZ_JJLH01000069.1:1..102834;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000069.1 RefSeq gene 435 989 . + . ID=gene-AD39_RS00990;Name=fimA;gbkey=Gene;gene=fimA;gene_biotype=protein_coding;locus_tag=AD39_RS00990;old_locus_tag=AD39_4948 NZ_JJLH01000069.1 Protein Homology CDS 435 989 . + 0 ID=cds-WP_000695589.1;Parent=gene-AD39_RS00990;Dbxref=GenBank:WP_000695589.1;Name=WP_000695589.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=fimA;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709921.1;locus_tag=AD39_RS00990;product=type 1 fimbrial major subunit FimA;protein_id=WP_000695589.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 1054 1593 . + . ID=gene-AD39_RS00985;Name=fimI;gbkey=Gene;gene=fimI;gene_biotype=protein_coding;locus_tag=AD39_RS00985;old_locus_tag=AD39_4949 NZ_JJLH01000069.1 Protein Homology CDS 1054 1593 . + 0 ID=cds-WP_000824114.1;Parent=gene-AD39_RS00985;Dbxref=GenBank:WP_000824114.1;Name=WP_000824114.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;gene=fimI;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418735.2;locus_tag=AD39_RS00985;product=fimbrial protein;protein_id=WP_000824114.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 1630 2355 . + . ID=gene-AD39_RS00980;Name=fimC;gbkey=Gene;gene=fimC;gene_biotype=protein_coding;locus_tag=AD39_RS00980;old_locus_tag=AD39_4950 NZ_JJLH01000069.1 Protein Homology CDS 1630 2355 . + 0 ID=cds-WP_000066560.1;Parent=gene-AD39_RS00980;Dbxref=GenBank:WP_000066560.1;Name=WP_000066560.1;gbkey=CDS;gene=fimC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418736.3;locus_tag=AD39_RS00980;product=type 1 fimbria chaperone FimC;protein_id=WP_000066560.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 2422 5058 . + . ID=gene-AD39_RS00975;Name=fimD;gbkey=Gene;gene=fimD;gene_biotype=protein_coding;locus_tag=AD39_RS00975;old_locus_tag=AD39_4951 NZ_JJLH01000069.1 Protein Homology CDS 2422 5058 . + 0 ID=cds-WP_001534126.1;Parent=gene-AD39_RS00975;Dbxref=GenBank:WP_001534126.1;Name=WP_001534126.1;gbkey=CDS;gene=fimD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313303.1;locus_tag=AD39_RS00975;product=fimbrial usher FimD;protein_id=WP_001534126.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 5068 5598 . + . ID=gene-AD39_RS00970;Name=fimF;gbkey=Gene;gene=fimF;gene_biotype=protein_coding;locus_tag=AD39_RS00970;old_locus_tag=AD39_4952 NZ_JJLH01000069.1 Protein Homology CDS 5068 5598 . + 0 ID=cds-WP_001244828.1;Parent=gene-AD39_RS00970;Dbxref=GenBank:WP_001244828.1;Name=WP_001244828.1;gbkey=CDS;gene=fimF;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313304.1;locus_tag=AD39_RS00970;product=type 1 fimbria minor subunit FimF;protein_id=WP_001244828.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 5671 6114 . + . ID=gene-AD39_RS00965;Name=AD39_RS00965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00965;old_locus_tag=AD39_4953 NZ_JJLH01000069.1 Protein Homology CDS 5671 6114 . + 0 ID=cds-WP_306234496.1;Parent=gene-AD39_RS00965;Dbxref=GenBank:WP_306234496.1;Name=WP_306234496.1;Ontology_term=GO:0007155,GO:0009289;gbkey=CDS;go_component=pilus|0009289||IEA;go_process=cell adhesion|0007155||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418739.1;locus_tag=AD39_RS00965;product=fimbrial protein;protein_id=WP_306234496.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 6134 7036 . + . ID=gene-AD39_RS00960;Name=fimH;gbkey=Gene;gene=fimH;gene_biotype=protein_coding;locus_tag=AD39_RS00960;old_locus_tag=AD39_4954 NZ_JJLH01000069.1 Protein Homology CDS 6134 7036 . + 0 ID=cds-WP_001297233.1;Parent=gene-AD39_RS00960;Dbxref=GenBank:WP_001297233.1;Name=WP_001297233.1;gbkey=CDS;gene=fimH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313306.1;locus_tag=AD39_RS00960;product=type 1 fimbria D-mannose specific adhesin FimH;protein_id=WP_001297233.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 7209 8552 . - . ID=gene-AD39_RS00955;Name=gntP;gbkey=Gene;gene=gntP;gene_biotype=protein_coding;locus_tag=AD39_RS00955;old_locus_tag=AD39_4955 NZ_JJLH01000069.1 Protein Homology CDS 7209 8552 . - 0 ID=cds-WP_000558251.1;Parent=gene-AD39_RS00955;Dbxref=GenBank:WP_000558251.1;Name=WP_000558251.1;gbkey=CDS;gene=gntP;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313307.1;locus_tag=AD39_RS00955;product=gluconate permease GntP;protein_id=WP_000558251.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 8892 10076 . + . ID=gene-AD39_RS00950;Name=uxuA;gbkey=Gene;gene=uxuA;gene_biotype=protein_coding;locus_tag=AD39_RS00950;old_locus_tag=AD39_4957 NZ_JJLH01000069.1 Protein Homology CDS 8892 10076 . + 0 ID=cds-WP_000438582.1;Parent=gene-AD39_RS00950;Dbxref=GenBank:WP_000438582.1;Name=WP_000438582.1;Ontology_term=GO:0006064,GO:0008927;gbkey=CDS;gene=uxuA;go_function=mannonate dehydratase activity|0008927||IEA;go_process=glucuronate catabolic process|0006064||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_709912.2;locus_tag=AD39_RS00950;product=mannonate dehydratase;protein_id=WP_000438582.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 10157 11617 . + . ID=gene-AD39_RS00945;Name=uxuB;gbkey=Gene;gene=uxuB;gene_biotype=protein_coding;locus_tag=AD39_RS00945;old_locus_tag=AD39_4958 NZ_JJLH01000069.1 Protein Homology CDS 10157 11617 . + 0 ID=cds-WP_000208194.1;Parent=gene-AD39_RS00945;Dbxref=GenBank:WP_000208194.1;Name=WP_000208194.1;gbkey=CDS;gene=uxuB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313309.1;locus_tag=AD39_RS00945;product=fructuronate reductase;protein_id=WP_000208194.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 11832 12605 . + . ID=gene-AD39_RS00940;Name=uxuR;gbkey=Gene;gene=uxuR;gene_biotype=protein_coding;locus_tag=AD39_RS00940;old_locus_tag=AD39_4959 NZ_JJLH01000069.1 Protein Homology CDS 11832 12605 . + 0 ID=cds-WP_000833691.1;Parent=gene-AD39_RS00940;Dbxref=GenBank:WP_000833691.1;Name=WP_000833691.1;gbkey=CDS;gene=uxuR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000833692.1;locus_tag=AD39_RS00940;product=Uxu operon transcriptional regulator;protein_id=WP_000833691.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 12746 13576 . - . ID=gene-AD39_RS00935;Name=yjiC;gbkey=Gene;gene=yjiC;gene_biotype=protein_coding;locus_tag=AD39_RS00935;old_locus_tag=AD39_4960 NZ_JJLH01000069.1 Protein Homology CDS 12746 13576 . - 0 ID=cds-WP_001562690.1;Parent=gene-AD39_RS00935;Dbxref=GenBank:WP_001562690.1;Name=WP_001562690.1;gbkey=CDS;gene=yjiC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313311.3;locus_tag=AD39_RS00935;product=DUF2686 family protein;protein_id=WP_001562690.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 13863 13931 . + . ID=gene-AD39_RS30230;Name=AD39_RS30230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS30230 NZ_JJLH01000069.1 Protein Homology CDS 13863 13931 . + 0 ID=cds-WP_418267939.1;Parent=gene-AD39_RS30230;Dbxref=GenBank:WP_418267939.1;Name=WP_418267939.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF048182.1;locus_tag=AD39_RS30230;product=hypothetical protein;protein_id=WP_418267939.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 13910 14053 . + . ID=gene-AD39_RS30010;Name=ytiD;gbkey=Gene;gene=ytiD;gene_biotype=protein_coding;locus_tag=AD39_RS30010;old_locus_tag=AD39_4961 NZ_JJLH01000069.1 Protein Homology CDS 13910 14053 . + 0 ID=cds-WP_001297228.1;Parent=gene-AD39_RS30010;Dbxref=GenBank:WP_001297228.1;Name=WP_001297228.1;gbkey=CDS;gene=ytiD;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518831.1;locus_tag=AD39_RS30010;product=protein YtiD;protein_id=WP_001297228.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 14169 14252 . + . ID=gene-AD39_RS29320;Name=idlP;gbkey=Gene;gene=idlP;gene_biotype=protein_coding;locus_tag=AD39_RS29320 NZ_JJLH01000069.1 Protein Homology CDS 14169 14252 . + 0 ID=cds-WP_120795393.1;Parent=gene-AD39_RS29320;Dbxref=GenBank:WP_120795393.1;Name=WP_120795393.1;gbkey=CDS;gene=idlP;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518832.1;locus_tag=AD39_RS29320;product=iraD leader peptide IdlP;protein_id=WP_120795393.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 14249 14641 . + . ID=gene-AD39_RS0125835;Name=iraD;gbkey=Gene;gene=iraD;gene_biotype=protein_coding;locus_tag=AD39_RS0125835 NZ_JJLH01000069.1 Protein Homology CDS 14249 14641 . + 0 ID=cds-WP_000986213.1;Parent=gene-AD39_RS0125835;Dbxref=GenBank:WP_000986213.1;Name=WP_000986213.1;gbkey=CDS;gene=iraD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313312.2;locus_tag=AD39_RS0125835;product=anti-adapter protein IraD;protein_id=WP_000986213.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 14634 15545 . - . ID=gene-AD39_RS00925;Name=hypT;gbkey=Gene;gene=hypT;gene_biotype=protein_coding;gene_synonym=qseD;locus_tag=AD39_RS00925;old_locus_tag=AD39_4964 NZ_JJLH01000069.1 Protein Homology CDS 14634 15545 . - 0 ID=cds-WP_001531977.1;Parent=gene-AD39_RS00925;Dbxref=GenBank:WP_001531977.1;Name=WP_001531977.1;gbkey=CDS;gene=hypT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418747.1;locus_tag=AD39_RS00925;product=hypochlorite stress DNA-binding transcriptional regulator HypT;protein_id=WP_001531977.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 15610 16782 . - . ID=gene-AD39_RS00920;Name=iadA;gbkey=Gene;gene=iadA;gene_biotype=protein_coding;locus_tag=AD39_RS00920;old_locus_tag=AD39_4965 NZ_JJLH01000069.1 Protein Homology CDS 15610 16782 . - 0 ID=cds-WP_000568417.1;Parent=gene-AD39_RS00920;Dbxref=GenBank:WP_000568417.1;Name=WP_000568417.1;Ontology_term=GO:0008798;gbkey=CDS;gene=iadA;go_function=beta-aspartyl-peptidase activity|0008798||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313313.1;locus_tag=AD39_RS00920;product=beta-aspartyl-peptidase;protein_id=WP_000568417.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 16795 17256 . - . ID=gene-AD39_RS00915;Name=yjiG;gbkey=Gene;gene=yjiG;gene_biotype=protein_coding;locus_tag=AD39_RS00915;old_locus_tag=AD39_4966 NZ_JJLH01000069.1 Protein Homology CDS 16795 17256 . - 0 ID=cds-WP_000211971.1;Parent=gene-AD39_RS00915;Dbxref=GenBank:WP_000211971.1;Name=WP_000211971.1;gbkey=CDS;gene=yjiG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313314.1;locus_tag=AD39_RS00915;product=YjiG family protein;protein_id=WP_000211971.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 17253 17936 . - . ID=gene-AD39_RS00910;Name=yjiH;gbkey=Gene;gene=yjiH;gene_biotype=protein_coding;locus_tag=AD39_RS00910;old_locus_tag=AD39_4967 NZ_JJLH01000069.1 Protein Homology CDS 17253 17936 . - 0 ID=cds-WP_001295597.1;Parent=gene-AD39_RS00910;Dbxref=GenBank:WP_001295597.1;Name=WP_001295597.1;gbkey=CDS;gene=yjiH;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418750.2;locus_tag=AD39_RS00910;product=nucleoside recognition domain-containing protein;protein_id=WP_001295597.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 18186 18740 . + . ID=gene-AD39_RS00905;Name=kptA;gbkey=Gene;gene=kptA;gene_biotype=protein_coding;locus_tag=AD39_RS00905;old_locus_tag=AD39_4969 NZ_JJLH01000069.1 Protein Homology CDS 18186 18740 . + 0 ID=cds-WP_001151854.1;Parent=gene-AD39_RS00905;Dbxref=GenBank:WP_001151854.1;Name=WP_001151854.1;gbkey=CDS;gene=kptA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001151849.1;locus_tag=AD39_RS00905;product=RNA 2'-phosphotransferase;protein_id=WP_001151854.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 18753 19931 . - . ID=gene-AD39_RS00900;Name=yjiJ;gbkey=Gene;gene=yjiJ;gene_biotype=protein_coding;locus_tag=AD39_RS00900;old_locus_tag=AD39_4970 NZ_JJLH01000069.1 Protein Homology CDS 18753 19931 . - 0 ID=cds-WP_001141206.1;Parent=gene-AD39_RS00900;Dbxref=GenBank:WP_001141206.1;Name=WP_001141206.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=yjiJ;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418752.1;locus_tag=AD39_RS00900;product=MFS transporter;protein_id=WP_001141206.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 19999 20859 . - . ID=gene-AD39_RS00895;Name=yjiK;gbkey=Gene;gene=yjiK;gene_biotype=protein_coding;locus_tag=AD39_RS00895;old_locus_tag=AD39_4971 NZ_JJLH01000069.1 Protein Homology CDS 19999 20859 . - 0 ID=cds-WP_001298932.1;Parent=gene-AD39_RS00895;Dbxref=GenBank:WP_001298932.1;Name=WP_001298932.1;gbkey=CDS;gene=yjiK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418753.3;locus_tag=AD39_RS00895;product=SdiA-regulated domain-containing protein;protein_id=WP_001298932.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 20924 21181 . - . ID=gene-AD39_RS00890;Name=ytiA;gbkey=Gene;gene=ytiA;gene_biotype=protein_coding;locus_tag=AD39_RS00890;old_locus_tag=AD39_4972 NZ_JJLH01000069.1 Protein Homology CDS 20924 21181 . - 0 ID=cds-WP_000657679.1;Parent=gene-AD39_RS00890;Dbxref=GenBank:WP_000657679.1;Name=WP_000657679.1;gbkey=CDS;gene=ytiA;inference=COORDINATES: similar to AA sequence:RefSeq:YP_009518833.1;locus_tag=AD39_RS00890;product=DUF3343 domain-containing protein;protein_id=WP_000657679.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 21178 21945 . - . ID=gene-AD39_RS00885;Name=yjiL;gbkey=Gene;gene=yjiL;gene_biotype=protein_coding;locus_tag=AD39_RS00885;old_locus_tag=AD39_4973 NZ_JJLH01000069.1 Protein Homology CDS 21178 21945 . - 0 ID=cds-WP_000222495.1;Parent=gene-AD39_RS00885;Dbxref=GenBank:WP_000222495.1;Name=WP_000222495.1;Note=YjiL%2C as found in Escherichia coli%2C is a homolog of the activator ATPases of enzymes such as lactoyl-CoA dehydratase%2C (R)-phenyllactate dehydratase%2C and 2-hydroxyisocaproyl-CoA dehydratase. The typical substrate of those enzymes is acyl-CoA with an OH at the beta-position. YjiL is the putative activator for the cognate protein YjiM%2C a putative 2-hydroxyacyl-CoA dehydratase with unknown specificity%2C encoded by the adjacent gene.;gbkey=CDS;gene=yjiL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313324.1;locus_tag=AD39_RS00885;product=putative 2-hydroxyacyl-CoA dehydratase activator YjiL;protein_id=WP_000222495.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 21955 23106 . - . ID=gene-AD39_RS00880;Name=yjiM;gbkey=Gene;gene=yjiM;gene_biotype=protein_coding;locus_tag=AD39_RS00880;old_locus_tag=AD39_4974 NZ_JJLH01000069.1 Protein Homology CDS 21955 23106 . - 0 ID=cds-WP_001348031.1;Parent=gene-AD39_RS00880;Dbxref=GenBank:WP_001348031.1;Name=WP_001348031.1;gbkey=CDS;gene=yjiM;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418755.4;locus_tag=AD39_RS00880;product=double-cubane-cluster-containing anaerobic reductase;protein_id=WP_001348031.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 23222 24502 . - . ID=gene-AD39_RS00875;Name=yjiN;gbkey=Gene;gene=yjiN;gene_biotype=protein_coding;locus_tag=AD39_RS00875;old_locus_tag=AD39_4975 NZ_JJLH01000069.1 Protein Homology CDS 23222 24502 . - 0 ID=cds-WP_001037376.1;Parent=gene-AD39_RS00875;Dbxref=GenBank:WP_001037376.1;Name=WP_001037376.1;gbkey=CDS;gene=yjiN;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418756.1;locus_tag=AD39_RS00875;product=DUF445 domain-containing protein;protein_id=WP_001037376.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 24543 25775 . - . ID=gene-AD39_RS00870;Name=mdtM;gbkey=Gene;gene=mdtM;gene_biotype=protein_coding;locus_tag=AD39_RS00870;old_locus_tag=AD39_4976 NZ_JJLH01000069.1 Protein Homology CDS 24543 25775 . - 0 ID=cds-WP_032283697.1;Parent=gene-AD39_RS00870;Dbxref=GenBank:WP_032283697.1;Name=WP_032283697.1;Ontology_term=GO:0055085,GO:0022857,GO:0016020;gbkey=CDS;gene=mdtM;go_component=membrane|0016020||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313327.1;locus_tag=AD39_RS00870;product=multidrug efflux MFS transporter MdtM;protein_id=WP_032283697.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 26242 27186 . + . ID=gene-AD39_RS00865;Name=AD39_RS00865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00865;old_locus_tag=AD39_4978 NZ_JJLH01000069.1 Protein Homology CDS 26242 27186 . + 0 ID=cds-WP_000181170.1;Parent=gene-AD39_RS00865;Dbxref=GenBank:WP_000181170.1;Name=WP_000181170.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001678496.1;locus_tag=AD39_RS00865;product=Rpn family recombination-promoting nuclease/putative transposase;protein_id=WP_000181170.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 27428 28840 . - . ID=gene-AD39_RS00860;Name=yjiR;gbkey=Gene;gene=yjiR;gene_biotype=protein_coding;locus_tag=AD39_RS00860;old_locus_tag=AD39_4979 NZ_JJLH01000069.1 Protein Homology CDS 27428 28840 . - 0 ID=cds-WP_000199339.1;Parent=gene-AD39_RS00860;Dbxref=GenBank:WP_000199339.1;Name=WP_000199339.1;Ontology_term=GO:0030170;gbkey=CDS;gene=yjiR;go_function=pyridoxal phosphate binding|0030170||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418760.1;locus_tag=AD39_RS00860;product=PLP-dependent aminotransferase family protein;protein_id=WP_000199339.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 28972 29136 . + . ID=gene-AD39_RS00855;Name=yjiS;gbkey=Gene;gene=yjiS;gene_biotype=protein_coding;locus_tag=AD39_RS00855;old_locus_tag=AD39_4980 NZ_JJLH01000069.1 Protein Homology CDS 28972 29136 . + 0 ID=cds-WP_000394270.1;Parent=gene-AD39_RS00855;Dbxref=GenBank:WP_000394270.1;Name=WP_000394270.1;gbkey=CDS;gene=yjiS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008786105.1;locus_tag=AD39_RS00855;product=DUF1127 domain-containing protein;protein_id=WP_000394270.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 29488 32028 . + . ID=gene-AD39_RS0125840;Name=AD39_RS0125840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125840 NZ_JJLH01000069.1 Protein Homology CDS 29488 32028 . + 0 ID=cds-WP_032283698.1;Parent=gene-AD39_RS0125840;Dbxref=GenBank:WP_032283698.1;Name=WP_032283698.1;Ontology_term=GO:0017000,GO:0046677,GO:0008953,GO:0016811,GO:0046872;gbkey=CDS;go_function=penicillin amidase activity|0008953||IEA,hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amides|0016811||IEA,metal ion binding|0046872||IEA;go_process=antibiotic biosynthetic process|0017000||IEA,response to antibiotic|0046677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001569102.1;locus_tag=AD39_RS0125840;product=penicillin G acylase;protein_id=WP_032283698.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 32106 33062 . - . ID=gene-AD39_RS00850;Name=yjiA;gbkey=Gene;gene=yjiA;gene_biotype=protein_coding;locus_tag=AD39_RS00850;old_locus_tag=AD39_4983 NZ_JJLH01000069.1 Protein Homology CDS 32106 33062 . - 0 ID=cds-WP_001298945.1;Parent=gene-AD39_RS00850;Dbxref=GenBank:WP_001298945.1;Name=WP_001298945.1;gbkey=CDS;gene=yjiA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313338.2;locus_tag=AD39_RS00850;product=GTPase;protein_id=WP_001298945.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 33073 33276 . - . ID=gene-AD39_RS00845;Name=yjiX;gbkey=Gene;gene=yjiX;gene_biotype=protein_coding;locus_tag=AD39_RS00845;old_locus_tag=AD39_4984 NZ_JJLH01000069.1 Protein Homology CDS 33073 33276 . - 0 ID=cds-WP_000467859.1;Parent=gene-AD39_RS00845;Dbxref=GenBank:WP_000467859.1;Name=WP_000467859.1;gbkey=CDS;gene=yjiX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313339.1;locus_tag=AD39_RS00845;product=YbdD/YjiX family protein;protein_id=WP_000467859.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 33326 35476 . - . ID=gene-AD39_RS00840;Name=btsT;gbkey=Gene;gene=btsT;gene_biotype=protein_coding;locus_tag=AD39_RS00840;old_locus_tag=AD39_4985 NZ_JJLH01000069.1 Protein Homology CDS 33326 35476 . - 0 ID=cds-WP_001534137.1;Parent=gene-AD39_RS00840;Dbxref=GenBank:WP_001534137.1;Name=WP_001534137.1;gbkey=CDS;gene=btsT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313340.2;locus_tag=AD39_RS00840;product=pyruvate/proton symporter BtsT;protein_id=WP_001534137.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 35869 36381 . - . ID=gene-AD39_RS00830;Name=AD39_RS00830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00830;old_locus_tag=AD39_4987 NZ_JJLH01000069.1 Protein Homology CDS 35869 36381 . - 0 ID=cds-WP_001175455.1;Parent=gene-AD39_RS00830;Dbxref=GenBank:WP_001175455.1;Name=WP_001175455.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710082.1;locus_tag=AD39_RS00830;product=4-hydroxyphenylacetate 3-monooxygenase reductase subunit;protein_id=WP_001175455.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 36399 37961 . - . ID=gene-AD39_RS00825;Name=hpaB;gbkey=Gene;gene=hpaB;gene_biotype=protein_coding;locus_tag=AD39_RS00825;old_locus_tag=AD39_4988 NZ_JJLH01000069.1 Protein Homology CDS 36399 37961 . - 0 ID=cds-WP_000801473.1;Parent=gene-AD39_RS00825;Dbxref=GenBank:WP_000801473.1;Name=WP_000801473.1;Ontology_term=GO:0010124,GO:0016712,GO:0050660;gbkey=CDS;gene=hpaB;go_function=oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C reduced flavin or flavoprotein as one donor%2C and incorporation of one atom of oxygen|0016712||IEA,flavin adenine dinucleotide binding|0050660||IEA;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000801462.1;locus_tag=AD39_RS00825;product=4-hydroxyphenylacetate 3-monooxygenase%2C oxygenase component;protein_id=WP_000801473.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 38212 39102 . - . ID=gene-AD39_RS00820;Name=hpaA;gbkey=Gene;gene=hpaA;gene_biotype=protein_coding;locus_tag=AD39_RS00820;old_locus_tag=AD39_4989 NZ_JJLH01000069.1 Protein Homology CDS 38212 39102 . - 0 ID=cds-WP_000332891.1;Parent=gene-AD39_RS00820;Dbxref=GenBank:WP_000332891.1;Name=WP_000332891.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=hpaA;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020801836.1;locus_tag=AD39_RS00820;product=4-hydroxyphenylacetate catabolism regulatory protein HpaA;protein_id=WP_000332891.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 39112 40488 . - . ID=gene-AD39_RS00815;Name=hpaX;gbkey=Gene;gene=hpaX;gene_biotype=protein_coding;locus_tag=AD39_RS00815;old_locus_tag=AD39_4990 NZ_JJLH01000069.1 Protein Homology CDS 39112 40488 . - 0 ID=cds-WP_001464950.1;Parent=gene-AD39_RS00815;Dbxref=GenBank:WP_001464950.1;Name=WP_001464950.1;Ontology_term=GO:1900754,GO:1901241;gbkey=CDS;gene=hpaX;go_function=4-hydroxyphenylacetate transmembrane transporter activity|1901241||IEA;go_process=4-hydroxyphenylacetate transport|1900754||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_460080.1;locus_tag=AD39_RS00815;product=4-hydroxyphenylacetate permease;protein_id=WP_001464950.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 40611 41399 . - . ID=gene-AD39_RS00810;Name=hpaI;gbkey=Gene;gene=hpaI;gene_biotype=protein_coding;locus_tag=AD39_RS00810;old_locus_tag=AD39_4991 NZ_JJLH01000069.1 Protein Homology CDS 40611 41399 . - 0 ID=cds-WP_000431706.1;Parent=gene-AD39_RS00810;Dbxref=GenBank:WP_000431706.1;Name=WP_000431706.1;Ontology_term=GO:0010124;gbkey=CDS;gene=hpaI;go_process=phenylacetate catabolic process|0010124||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_015966060.1;locus_tag=AD39_RS00810;product=4-hydroxy-2-oxoheptanedioate aldolase;protein_id=WP_000431706.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 41410 42213 . - . ID=gene-AD39_RS00805;Name=hpaH;gbkey=Gene;gene=hpaH;gene_biotype=protein_coding;locus_tag=AD39_RS00805;old_locus_tag=AD39_4992 NZ_JJLH01000069.1 Protein Homology CDS 41410 42213 . - 0 ID=cds-WP_000459750.1;Parent=gene-AD39_RS00805;Dbxref=GenBank:WP_000459750.1;Name=WP_000459750.1;Ontology_term=GO:0009056,GO:0018817;gbkey=CDS;gene=hpaH;go_function=2-oxo-hept-3-ene-1%2C7-dioate hydratase activity|0018817||IEA;go_process=catabolic process|0009056||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710089.2;locus_tag=AD39_RS00805;product=2-oxo-hept-4-ene-1%2C7-dioate hydratase;protein_id=WP_000459750.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 42324 42704 . - . ID=gene-AD39_RS00800;Name=AD39_RS00800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00800;old_locus_tag=AD39_4993 NZ_JJLH01000069.1 Protein Homology CDS 42324 42704 . - 0 ID=cds-WP_001119864.1;Parent=gene-AD39_RS00800;Dbxref=GenBank:WP_001119864.1;Name=WP_001119864.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710090.1;locus_tag=AD39_RS00800;product=5-carboxymethyl-2-hydroxymuconate Delta-isomerase;protein_id=WP_001119864.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 42714 43565 . - . ID=gene-AD39_RS00795;Name=hpaD;gbkey=Gene;gene=hpaD;gene_biotype=protein_coding;locus_tag=AD39_RS00795;old_locus_tag=AD39_4994 NZ_JJLH01000069.1 Protein Homology CDS 42714 43565 . - 0 ID=cds-WP_000517002.1;Parent=gene-AD39_RS00795;Dbxref=GenBank:WP_000517002.1;Name=WP_000517002.1;Ontology_term=GO:0008152,GO:0008198,GO:0008687;gbkey=CDS;gene=hpaD;go_function=ferrous iron binding|0008198||IEA,3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase activity|0008687||IEA;go_process=metabolic process|0008152||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710091.1;locus_tag=AD39_RS00795;product=3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase;protein_id=WP_000517002.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 43567 45033 . - . ID=gene-AD39_RS00790;Name=hpaE;gbkey=Gene;gene=hpaE;gene_biotype=protein_coding;locus_tag=AD39_RS00790;old_locus_tag=AD39_4995 NZ_JJLH01000069.1 Protein Homology CDS 43567 45033 . - 0 ID=cds-WP_000757512.1;Parent=gene-AD39_RS00790;Dbxref=GenBank:WP_000757512.1;Name=WP_000757512.1;Ontology_term=GO:1901023,GO:0018480;gbkey=CDS;gene=hpaE;go_function=5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity|0018480||IEA;go_process=4-hydroxyphenylacetate catabolic process|1901023||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710092.1;locus_tag=AD39_RS00790;product=5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase;protein_id=WP_000757512.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 45030 46319 . - . ID=gene-AD39_RS00785;Name=hpaG;gbkey=Gene;gene=hpaG;gene_biotype=protein_coding;locus_tag=AD39_RS00785;old_locus_tag=AD39_4996 NZ_JJLH01000069.1 Protein Homology CDS 45030 46319 . - 0 ID=cds-WP_000679083.1;Parent=gene-AD39_RS00785;Dbxref=GenBank:WP_000679083.1;Name=WP_000679083.1;Ontology_term=GO:1901023,GO:0008704,GO:0018800;gbkey=CDS;gene=hpaG;go_function=5-carboxymethyl-2-hydroxymuconate delta-isomerase activity|0008704||IEA,5-oxopent-3-ene-1%2C2%2C5-tricarboxylate decarboxylase activity|0018800||IEA;go_process=4-hydroxyphenylacetate catabolic process|1901023||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710093.2;locus_tag=AD39_RS00785;product=4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase;protein_id=WP_000679083.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 46591 47037 . + . ID=gene-AD39_RS00780;Name=hpaR;gbkey=Gene;gene=hpaR;gene_biotype=protein_coding;locus_tag=AD39_RS00780;old_locus_tag=AD39_4997 NZ_JJLH01000069.1 Protein Homology CDS 46591 47037 . + 0 ID=cds-WP_000543916.1;Parent=gene-AD39_RS00780;Dbxref=GenBank:WP_000543916.1;Name=WP_000543916.1;Ontology_term=GO:0045892,GO:0003677,GO:0003700;gbkey=CDS;gene=hpaR;go_function=DNA binding|0003677||IEA,DNA-binding transcription factor activity|0003700||IEA;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710094.1;locus_tag=AD39_RS00780;product=homoprotocatechuate degradation operon regulator HpaR;protein_id=WP_000543916.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 47156 48820 . + . ID=gene-AD39_RS00775;Name=tsr;gbkey=Gene;gene=tsr;gene_biotype=protein_coding;locus_tag=AD39_RS00775;old_locus_tag=AD39_4998 NZ_JJLH01000069.1 Protein Homology CDS 47156 48820 . + 0 ID=cds-WP_000919571.1;Parent=gene-AD39_RS00775;Dbxref=GenBank:WP_000919571.1;Name=WP_000919571.1;Ontology_term=GO:0006935,GO:0007165,GO:0004888,GO:0016020;gbkey=CDS;gene=tsr;go_component=membrane|0016020||IEA;go_function=transmembrane signaling receptor activity|0004888||IEA;go_process=chemotaxis|0006935||IEA,signal transduction|0007165||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313342.1;locus_tag=AD39_RS00775;product=methyl-accepting chemotaxis protein;protein_id=WP_000919571.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 48869 50230 . - . ID=gene-AD39_RS00770;Name=lgoT;gbkey=Gene;gene=lgoT;gene_biotype=protein_coding;locus_tag=AD39_RS00770;old_locus_tag=AD39_4999 NZ_JJLH01000069.1 Protein Homology CDS 48869 50230 . - 0 ID=cds-WP_000410144.1;Parent=gene-AD39_RS00770;Dbxref=GenBank:WP_000410144.1;Name=WP_000410144.1;Ontology_term=GO:0055085,GO:0022857;gbkey=CDS;gene=lgoT;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313343.1;locus_tag=AD39_RS00770;product=MFS transporter;protein_id=WP_000410144.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 50445 51359 . - . ID=gene-AD39_RS00765;Name=lgoR;gbkey=Gene;gene=lgoR;gene_biotype=protein_coding;locus_tag=AD39_RS00765;old_locus_tag=AD39_5000 NZ_JJLH01000069.1 Protein Homology CDS 50445 51359 . - 0 ID=cds-WP_000091572.1;Parent=gene-AD39_RS00765;Dbxref=GenBank:WP_000091572.1;Name=WP_000091572.1;gbkey=CDS;gene=lgoR;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313344.2;locus_tag=AD39_RS00765;product=GntR family transcriptional regulator;protein_id=WP_000091572.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 51498 52520 . + . ID=gene-AD39_RS00760;Name=lgoD;gbkey=Gene;gene=lgoD;gene_biotype=protein_coding;locus_tag=AD39_RS00760;old_locus_tag=AD39_5001 NZ_JJLH01000069.1 Protein Homology CDS 51498 52520 . + 0 ID=cds-WP_000106033.1;Parent=gene-AD39_RS00760;Dbxref=GenBank:WP_000106033.1;Name=WP_000106033.1;gbkey=CDS;gene=lgoD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418778.4;locus_tag=AD39_RS00760;product=L-galactonate oxidoreductase;protein_id=WP_000106033.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 52659 54950 . - . ID=gene-AD39_RS00755;Name=opgB;gbkey=Gene;gene=opgB;gene_biotype=protein_coding;locus_tag=AD39_RS00755;old_locus_tag=AD39_5002 NZ_JJLH01000069.1 Protein Homology CDS 52659 54950 . - 0 ID=cds-WP_001292655.1;Parent=gene-AD39_RS00755;Dbxref=GenBank:WP_001292655.1;Name=WP_001292655.1;Ontology_term=GO:0008484;gbkey=CDS;gene=opgB;go_function=sulfuric ester hydrolase activity|0008484||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418779.2;locus_tag=AD39_RS00755;product=phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase;protein_id=WP_001292655.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 55204 55698 . - . ID=gene-AD39_RS00750;Name=yjjA;gbkey=Gene;gene=yjjA;gene_biotype=protein_coding;locus_tag=AD39_RS00750;old_locus_tag=AD39_5003 NZ_JJLH01000069.1 Protein Homology CDS 55204 55698 . - 0 ID=cds-WP_001350029.1;Parent=gene-AD39_RS00750;Dbxref=GenBank:WP_001350029.1;Name=WP_001350029.1;gbkey=CDS;gene=yjjA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418780.2;locus_tag=AD39_RS00750;product=DUF2501 domain-containing protein YjjA;protein_id=WP_001350029.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 55747 56484 . - . ID=gene-AD39_RS00745;Name=dnaC;gbkey=Gene;gene=dnaC;gene_biotype=protein_coding;locus_tag=AD39_RS00745;old_locus_tag=AD39_5004 NZ_JJLH01000069.1 Protein Homology CDS 55747 56484 . - 0 ID=cds-WP_000799911.1;Parent=gene-AD39_RS00745;Dbxref=GenBank:WP_000799911.1;Name=WP_000799911.1;gbkey=CDS;gene=dnaC;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313348.1;locus_tag=AD39_RS00745;product=DNA replication protein DnaC;protein_id=WP_000799911.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 56487 57026 . - . ID=gene-AD39_RS00740;Name=dnaT;gbkey=Gene;gene=dnaT;gene_biotype=protein_coding;locus_tag=AD39_RS00740;old_locus_tag=AD39_5005 NZ_JJLH01000069.1 Protein Homology CDS 56487 57026 . - 0 ID=cds-WP_000098818.1;Parent=gene-AD39_RS00740;Dbxref=GenBank:WP_000098818.1;Name=WP_000098818.1;gbkey=CDS;gene=dnaT;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418782.1;locus_tag=AD39_RS00740;product=primosomal protein DnaT;protein_id=WP_000098818.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 57133 57606 . - . ID=gene-AD39_RS00735;Name=yjjB;gbkey=Gene;gene=yjjB;gene_biotype=protein_coding;locus_tag=AD39_RS00735;old_locus_tag=AD39_5006 NZ_JJLH01000069.1 Protein Homology CDS 57133 57606 . - 0 ID=cds-WP_000538188.1;Parent=gene-AD39_RS00735;Dbxref=GenBank:WP_000538188.1;Name=WP_000538188.1;gbkey=CDS;gene=yjjB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418783.2;locus_tag=AD39_RS00735;product=threonine/serine exporter;protein_id=WP_000538188.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 57597 58367 . - . ID=gene-AD39_RS00730;Name=yjjP;gbkey=Gene;gene=yjjP;gene_biotype=protein_coding;locus_tag=AD39_RS00730;old_locus_tag=AD39_5007 NZ_JJLH01000069.1 Protein Homology CDS 57597 58367 . - 0 ID=cds-WP_001340933.1;Parent=gene-AD39_RS00730;Dbxref=GenBank:WP_001340933.1;Name=WP_001340933.1;Ontology_term=GO:0055085,GO:0022857,GO:0005886;gbkey=CDS;gene=yjjP;go_component=plasma membrane|0005886||IEA;go_function=transmembrane transporter activity|0022857||IEA;go_process=transmembrane transport|0055085||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418784.4;locus_tag=AD39_RS00730;product=threonine/serine ThrE exporter family protein;protein_id=WP_001340933.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 58986 59711 . + . ID=gene-AD39_RS00725;Name=yjjQ;gbkey=Gene;gene=yjjQ;gene_biotype=protein_coding;locus_tag=AD39_RS00725;old_locus_tag=AD39_5008 NZ_JJLH01000069.1 Protein Homology CDS 58986 59711 . + 0 ID=cds-WP_000936630.1;Parent=gene-AD39_RS00725;Dbxref=GenBank:WP_000936630.1;Name=WP_000936630.1;gbkey=CDS;gene=yjjQ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313352.1;locus_tag=AD39_RS00725;product=helix-turn-helix domain-containing protein;protein_id=WP_000936630.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 59669 60346 . + . ID=gene-AD39_RS00720;Name=bglJ;gbkey=Gene;gene=bglJ;gene_biotype=protein_coding;locus_tag=AD39_RS00720;old_locus_tag=AD39_5009 NZ_JJLH01000069.1 Protein Homology CDS 59669 60346 . + 0 ID=cds-WP_001300509.1;Parent=gene-AD39_RS00720;Dbxref=GenBank:WP_001300509.1;Name=WP_001300509.1;Ontology_term=GO:0006355,GO:0003677;gbkey=CDS;gene=bglJ;go_function=DNA binding|0003677||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418786.4;locus_tag=AD39_RS00720;product=DNA-binding transcriptional activator BglJ;protein_id=WP_001300509.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 60384 61172 . - . ID=gene-AD39_RS00715;Name=fhuF;gbkey=Gene;gene=fhuF;gene_biotype=protein_coding;locus_tag=AD39_RS00715;old_locus_tag=AD39_5010 NZ_JJLH01000069.1 Protein Homology CDS 60384 61172 . - 0 ID=cds-WP_000331614.1;Parent=gene-AD39_RS00715;Dbxref=GenBank:WP_000331614.1;Name=WP_000331614.1;Ontology_term=GO:0051537;gbkey=CDS;gene=fhuF;go_function=2 iron%2C 2 sulfur cluster binding|0051537||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710108.1;locus_tag=AD39_RS00715;product=siderophore-iron reductase FhuF;protein_id=WP_000331614.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 61313 61549 . + . ID=gene-AD39_RS00710;Name=yjjZ;gbkey=Gene;gene=yjjZ;gene_biotype=protein_coding;locus_tag=AD39_RS00710;old_locus_tag=AD39_5011 NZ_JJLH01000069.1 Protein Homology CDS 61313 61549 . + 0 ID=cds-WP_001350368.1;Parent=gene-AD39_RS00710;Dbxref=GenBank:WP_001350368.1;Name=WP_001350368.1;gbkey=CDS;gene=yjjZ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313355.3;locus_tag=AD39_RS00710;product=DUF1435 domain-containing protein;protein_id=WP_001350368.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 61588 61674 . - . ID=gene-AD39_RS00705;Name=AD39_RS00705;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS00705;old_locus_tag=AD39_5012 NZ_JJLH01000069.1 tRNAscan-SE tRNA 61588 61674 . - . ID=rna-AD39_RS00705;Parent=gene-AD39_RS00705;anticodon=(pos:complement(61638..61640));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00705;product=tRNA-Leu NZ_JJLH01000069.1 tRNAscan-SE exon 61588 61674 . - . ID=exon-AD39_RS00705-1;Parent=rna-AD39_RS00705;anticodon=(pos:complement(61638..61640));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00705;product=tRNA-Leu NZ_JJLH01000069.1 RefSeq gene 61709 61795 . - . ID=gene-AD39_RS00700;Name=AD39_RS00700;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS00700;old_locus_tag=AD39_5013 NZ_JJLH01000069.1 tRNAscan-SE tRNA 61709 61795 . - . ID=rna-AD39_RS00700;Parent=gene-AD39_RS00700;anticodon=(pos:complement(61759..61761));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00700;product=tRNA-Leu NZ_JJLH01000069.1 tRNAscan-SE exon 61709 61795 . - . ID=exon-AD39_RS00700-1;Parent=rna-AD39_RS00700;anticodon=(pos:complement(61759..61761));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00700;product=tRNA-Leu NZ_JJLH01000069.1 RefSeq gene 61824 61910 . - . ID=gene-AD39_RS00695;Name=AD39_RS00695;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS00695;old_locus_tag=AD39_5014 NZ_JJLH01000069.1 tRNAscan-SE tRNA 61824 61910 . - . ID=rna-AD39_RS00695;Parent=gene-AD39_RS00695;anticodon=(pos:complement(61874..61876));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00695;product=tRNA-Leu NZ_JJLH01000069.1 tRNAscan-SE exon 61824 61910 . - . ID=exon-AD39_RS00695-1;Parent=rna-AD39_RS00695;anticodon=(pos:complement(61874..61876));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00695;product=tRNA-Leu NZ_JJLH01000069.1 RefSeq gene 61945 62031 . - . ID=gene-AD39_RS00690;Name=AD39_RS00690;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS00690;old_locus_tag=AD39_5015 NZ_JJLH01000069.1 tRNAscan-SE tRNA 61945 62031 . - . ID=rna-AD39_RS00690;Parent=gene-AD39_RS00690;anticodon=(pos:complement(61995..61997));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00690;product=tRNA-Leu NZ_JJLH01000069.1 tRNAscan-SE exon 61945 62031 . - . ID=exon-AD39_RS00690-1;Parent=rna-AD39_RS00690;anticodon=(pos:complement(61995..61997));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00690;product=tRNA-Leu NZ_JJLH01000069.1 RefSeq gene 62060 62146 . - . ID=gene-AD39_RS00685;Name=AD39_RS00685;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS00685;old_locus_tag=AD39_5016 NZ_JJLH01000069.1 tRNAscan-SE tRNA 62060 62146 . - . ID=rna-AD39_RS00685;Parent=gene-AD39_RS00685;anticodon=(pos:complement(62110..62112));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00685;product=tRNA-Leu NZ_JJLH01000069.1 tRNAscan-SE exon 62060 62146 . - . ID=exon-AD39_RS00685-1;Parent=rna-AD39_RS00685;anticodon=(pos:complement(62110..62112));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00685;product=tRNA-Leu NZ_JJLH01000069.1 RefSeq gene 62447 63478 . - . ID=gene-AD39_RS00680;Name=rsmC;gbkey=Gene;gene=rsmC;gene_biotype=protein_coding;locus_tag=AD39_RS00680;old_locus_tag=AD39_5017 NZ_JJLH01000069.1 Protein Homology CDS 62447 63478 . - 0 ID=cds-WP_001272319.1;Parent=gene-AD39_RS00680;Dbxref=GenBank:WP_001272319.1;Name=WP_001272319.1;Ontology_term=GO:0006364,GO:0003676,GO:0008990;gbkey=CDS;gene=rsmC;go_function=nucleic acid binding|0003676||IEA,rRNA (guanine-N2-)-methyltransferase activity|0008990||IEA;go_process=rRNA processing|0006364||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313356.1;locus_tag=AD39_RS00680;product=16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC;protein_id=WP_001272319.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 63581 63994 . + . ID=gene-AD39_RS00675;Name=holD;gbkey=Gene;gene=holD;gene_biotype=protein_coding;locus_tag=AD39_RS00675;old_locus_tag=AD39_5018 NZ_JJLH01000069.1 Protein Homology CDS 63581 63994 . + 0 ID=cds-WP_000204016.1;Parent=gene-AD39_RS00675;Dbxref=GenBank:WP_000204016.1;Name=WP_000204016.1;gbkey=CDS;gene=holD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313357.1;locus_tag=AD39_RS00675;product=DNA polymerase III subunit psi;protein_id=WP_000204016.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 63963 64409 . + . ID=gene-AD39_RS00670;Name=rimI;gbkey=Gene;gene=rimI;gene_biotype=protein_coding;locus_tag=AD39_RS00670;old_locus_tag=AD39_5019 NZ_JJLH01000069.1 Protein Homology CDS 63963 64409 . + 0 ID=cds-WP_001092461.1;Parent=gene-AD39_RS00670;Dbxref=GenBank:WP_001092461.1;Name=WP_001092461.1;Ontology_term=GO:0006474,GO:0008080;gbkey=CDS;gene=rimI;go_function=N-acetyltransferase activity|0008080||IEA;go_process=N-terminal protein amino acid acetylation|0006474||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313358.1;locus_tag=AD39_RS00670;product=ribosomal protein S18-alanine N-acetyltransferase;protein_id=WP_001092461.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 64424 65101 . + . ID=gene-AD39_RS00665;Name=yjjG;gbkey=Gene;gene=yjjG;gene_biotype=protein_coding;locus_tag=AD39_RS00665;old_locus_tag=AD39_5020 NZ_JJLH01000069.1 Protein Homology CDS 64424 65101 . + 0 ID=cds-WP_000870700.1;Parent=gene-AD39_RS00665;Dbxref=GenBank:WP_000870700.1;Name=WP_000870700.1;Ontology_term=GO:0008253;gbkey=CDS;gene=yjjG;go_function=5'-nucleotidase activity|0008253||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710113.1;locus_tag=AD39_RS00665;product=pyrimidine 5'-nucleotidase;protein_id=WP_000870700.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 65192 66781 . + . ID=gene-AD39_RS00660;Name=prfC;gbkey=Gene;gene=prfC;gene_biotype=protein_coding;locus_tag=AD39_RS00660;old_locus_tag=AD39_5021 NZ_JJLH01000069.1 Protein Homology CDS 65192 66781 . + 0 ID=cds-WP_000175943.1;Parent=gene-AD39_RS00660;Dbxref=GenBank:WP_000175943.1;Name=WP_000175943.1;Ontology_term=GO:0006415,GO:0003747,GO:0003924,GO:0005525;gbkey=CDS;gene=prfC;go_function=translation release factor activity|0003747||IEA,GTPase activity|0003924||IEA,GTP binding|0005525||IEA;go_process=translational termination|0006415||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313360.1;locus_tag=AD39_RS00660;product=peptide chain release factor 3;protein_id=WP_000175943.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 67174 67779 . + . ID=gene-AD39_RS00655;Name=osmY;gbkey=Gene;gene=osmY;gene_biotype=protein_coding;locus_tag=AD39_RS00655;old_locus_tag=AD39_5022 NZ_JJLH01000069.1 Protein Homology CDS 67174 67779 . + 0 ID=cds-WP_001295748.1;Parent=gene-AD39_RS00655;Dbxref=GenBank:WP_001295748.1;Name=WP_001295748.1;gbkey=CDS;gene=osmY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418793.1;locus_tag=AD39_RS00655;product=molecular chaperone OsmY;protein_id=WP_001295748.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 67906 68067 . + . ID=gene-AD39_RS00650;Name=ytjA;gbkey=Gene;gene=ytjA;gene_biotype=protein_coding;locus_tag=AD39_RS00650;old_locus_tag=AD39_5023 NZ_JJLH01000069.1 Protein Homology CDS 67906 68067 . + 0 ID=cds-WP_000490275.1;Parent=gene-AD39_RS00650;Dbxref=GenBank:WP_000490275.1;Name=WP_000490275.1;gbkey=CDS;gene=ytjA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_002887716.1;locus_tag=AD39_RS00650;product=DUF1328 domain-containing protein;protein_id=WP_000490275.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 68189 69262 . + . ID=gene-AD39_RS00645;Name=yjjU;gbkey=Gene;gene=yjjU;gene_biotype=protein_coding;locus_tag=AD39_RS00645;old_locus_tag=AD39_5024 NZ_JJLH01000069.1 Protein Homology CDS 68189 69262 . + 0 ID=cds-WP_000531527.1;Parent=gene-AD39_RS00645;Dbxref=GenBank:WP_000531527.1;Name=WP_000531527.1;gbkey=CDS;gene=yjjU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313362.1;locus_tag=AD39_RS00645;product=patatin-like phospholipase family protein;protein_id=WP_000531527.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 69259 70041 . + . ID=gene-AD39_RS00640;Name=yjjV;gbkey=Gene;gene=yjjV;gene_biotype=protein_coding;locus_tag=AD39_RS00640;old_locus_tag=AD39_5025 NZ_JJLH01000069.1 Protein Homology CDS 69259 70041 . + 0 ID=cds-WP_000563072.1;Parent=gene-AD39_RS00640;Dbxref=GenBank:WP_000563072.1;Name=WP_000563072.1;Ontology_term=GO:0016788;gbkey=CDS;gene=yjjV;go_function=hydrolase activity%2C acting on ester bonds|0016788||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313363.2;locus_tag=AD39_RS00640;product=metal-dependent hydrolase;protein_id=WP_000563072.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 70154 71017 . - . ID=gene-AD39_RS00635;Name=yjjW;gbkey=Gene;gene=yjjW;gene_biotype=protein_coding;locus_tag=AD39_RS00635;old_locus_tag=AD39_5026 NZ_JJLH01000069.1 Protein Homology CDS 70154 71017 . - 0 ID=cds-WP_001088395.1;Parent=gene-AD39_RS00635;Dbxref=GenBank:WP_001088395.1;Name=WP_001088395.1;Ontology_term=GO:0051539,GO:1904047;gbkey=CDS;gene=yjjW;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,S-adenosyl-L-methionine binding|1904047||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418796.1;locus_tag=AD39_RS00635;product=YjjW family glycine radical enzyme activase;protein_id=WP_001088395.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 70989 72539 . - . ID=gene-AD39_RS00630;Name=yjjI;gbkey=Gene;gene=yjjI;gene_biotype=protein_coding;locus_tag=AD39_RS00630;old_locus_tag=AD39_5027 NZ_JJLH01000069.1 Protein Homology CDS 70989 72539 . - 0 ID=cds-WP_028985233.1;Parent=gene-AD39_RS00630;Dbxref=GenBank:WP_028985233.1;Name=WP_028985233.1;Ontology_term=GO:0003824;gbkey=CDS;gene=yjjI;go_function=catalytic activity|0003824||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418797.1;locus_tag=AD39_RS00630;product=YjjI family glycine radical enzyme;protein_id=WP_028985233.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 72797 73576 . + . ID=gene-AD39_RS00625;Name=deoC;gbkey=Gene;gene=deoC;gene_biotype=protein_coding;locus_tag=AD39_RS00625;old_locus_tag=AD39_5029 NZ_JJLH01000069.1 Protein Homology CDS 72797 73576 . + 0 ID=cds-WP_001295412.1;Parent=gene-AD39_RS00625;Dbxref=GenBank:WP_001295412.1;Name=WP_001295412.1;Ontology_term=GO:0009264,GO:0004139,GO:0005737;gbkey=CDS;gene=deoC;go_component=cytoplasm|0005737||IEA;go_function=deoxyribose-phosphate aldolase activity|0004139||IEA;go_process=deoxyribonucleotide catabolic process|0009264||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005097947.1;locus_tag=AD39_RS00625;product=deoxyribose-phosphate aldolase;protein_id=WP_001295412.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 73703 75025 . + . ID=gene-AD39_RS00620;Name=deoA;gbkey=Gene;gene=deoA;gene_biotype=protein_coding;locus_tag=AD39_RS00620;old_locus_tag=AD39_5030 NZ_JJLH01000069.1 Protein Homology CDS 73703 75025 . + 0 ID=cds-WP_000477811.1;Parent=gene-AD39_RS00620;Dbxref=GenBank:WP_000477811.1;Name=WP_000477811.1;Ontology_term=GO:0006213,GO:0009032;gbkey=CDS;gene=deoA;go_function=thymidine phosphorylase activity|0009032||IEA;go_process=pyrimidine nucleoside metabolic process|0006213||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005123902.1;locus_tag=AD39_RS00620;product=thymidine phosphorylase;protein_id=WP_000477811.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 75077 76300 . + . ID=gene-AD39_RS00615;Name=deoB;gbkey=Gene;gene=deoB;gene_biotype=protein_coding;locus_tag=AD39_RS00615;old_locus_tag=AD39_5031 NZ_JJLH01000069.1 Protein Homology CDS 75077 76300 . + 0 ID=cds-WP_000816471.1;Parent=gene-AD39_RS00615;Dbxref=GenBank:WP_000816471.1;Name=WP_000816471.1;Ontology_term=GO:0009117,GO:0043094,GO:0000287,GO:0008973,GO:0005737;gbkey=CDS;gene=deoB;go_component=cytoplasm|0005737||IEA;go_function=magnesium ion binding|0000287||IEA,phosphopentomutase activity|0008973||IEA;go_process=nucleotide metabolic process|0009117||IEA,metabolic compound salvage|0043094||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313369.1;locus_tag=AD39_RS00615;product=phosphopentomutase;protein_id=WP_000816471.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 76380 77099 . + . ID=gene-AD39_RS00610;Name=deoD;gbkey=Gene;gene=deoD;gene_biotype=protein_coding;locus_tag=AD39_RS00610;old_locus_tag=AD39_5032 NZ_JJLH01000069.1 Protein Homology CDS 76380 77099 . + 0 ID=cds-WP_000224877.1;Parent=gene-AD39_RS00610;Dbxref=GenBank:WP_000224877.1;Name=WP_000224877.1;Ontology_term=GO:0006139,GO:0004731;gbkey=CDS;gene=deoD;go_function=purine-nucleoside phosphorylase activity|0004731||IEA;go_process=nucleobase-containing compound metabolic process|0006139||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313370.1;locus_tag=AD39_RS00610;product=purine-nucleoside phosphorylase;protein_id=WP_000224877.1;transl_table=11 NZ_JJLH01000069.1 RefSeq pseudogene 77260 77523 . - . ID=gene-AD39_RS29895;Name=AD39_RS29895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29895;pseudo=true NZ_JJLH01000069.1 Protein Homology CDS 77260 77523 . - 0 ID=cds-AD39_RS29895;Parent=gene-AD39_RS29895;Note=internal stop;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313371.1;locus_tag=AD39_RS29895;product=helix-turn-helix domain-containing protein;pseudo=true;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 77555 78571 . - . ID=gene-AD39_RS29325;Name=lplA;gbkey=Gene;gene=lplA;gene_biotype=protein_coding;locus_tag=AD39_RS29325;old_locus_tag=AD39_5034 NZ_JJLH01000069.1 Protein Homology CDS 77555 78571 . - 0 ID=cds-WP_000105889.1;Parent=gene-AD39_RS29325;Dbxref=GenBank:WP_000105889.1;Name=WP_000105889.1;gbkey=CDS;gene=lplA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418803.1;locus_tag=AD39_RS29325;product=lipoate--protein ligase LplA;protein_id=WP_000105889.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 78599 79243 . - . ID=gene-AD39_RS29330;Name=ytjB;gbkey=Gene;gene=ytjB;gene_biotype=protein_coding;locus_tag=AD39_RS29330;old_locus_tag=AD39_5035 NZ_JJLH01000069.1 Protein Homology CDS 78599 79243 . - 0 ID=cds-WP_000124615.1;Parent=gene-AD39_RS29330;Dbxref=GenBank:WP_000124615.1;Name=WP_000124615.1;gbkey=CDS;gene=ytjB;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418804.1;locus_tag=AD39_RS29330;product=YtjB family periplasmic protein;protein_id=WP_000124615.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 79349 80317 . + . ID=gene-AD39_RS00590;Name=serB;gbkey=Gene;gene=serB;gene_biotype=protein_coding;locus_tag=AD39_RS00590;old_locus_tag=AD39_5036 NZ_JJLH01000069.1 Protein Homology CDS 79349 80317 . + 0 ID=cds-WP_001132955.1;Parent=gene-AD39_RS00590;Dbxref=GenBank:WP_001132955.1;Name=WP_001132955.1;Ontology_term=GO:0006564,GO:0036424;gbkey=CDS;gene=serB;go_function=L-phosphoserine phosphatase activity|0036424||IEA;go_process=L-serine biosynthetic process|0006564||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313373.1;locus_tag=AD39_RS00590;product=phosphoserine phosphatase;protein_id=WP_001132955.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 80366 81748 . + . ID=gene-AD39_RS00585;Name=radA;gbkey=Gene;gene=radA;gene_biotype=protein_coding;locus_tag=AD39_RS00585;old_locus_tag=AD39_5037 NZ_JJLH01000069.1 Protein Homology CDS 80366 81748 . + 0 ID=cds-WP_001399683.1;Parent=gene-AD39_RS00585;Dbxref=GenBank:WP_001399683.1;Name=WP_001399683.1;Ontology_term=GO:0006281,GO:0003684,GO:0005524;gbkey=CDS;gene=radA;go_function=damaged DNA binding|0003684||IEA,ATP binding|0005524||IEA;go_process=DNA repair|0006281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001399683.1;locus_tag=AD39_RS00585;product=DNA repair protein RadA;protein_id=WP_001399683.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 81769 83001 . + . ID=gene-AD39_RS00580;Name=nadR;gbkey=Gene;gene=nadR;gene_biotype=protein_coding;locus_tag=AD39_RS00580;old_locus_tag=AD39_5038 NZ_JJLH01000069.1 Protein Homology CDS 81769 83001 . + 0 ID=cds-WP_000093808.1;Parent=gene-AD39_RS00580;Dbxref=GenBank:WP_000093808.1;Name=WP_000093808.1;Ontology_term=GO:0009058,GO:0000309,GO:0003677,GO:0050262;gbkey=CDS;gene=nadR;go_function=nicotinamide-nucleotide adenylyltransferase activity|0000309||IEA,DNA binding|0003677||IEA,ribosylnicotinamide kinase activity|0050262||IEA;go_process=biosynthetic process|0009058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418807.4;locus_tag=AD39_RS00580;product=multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR;protein_id=WP_000093808.1;transl_table=11 NZ_JJLH01000069.1 RefSeq pseudogene 83040 83147 . + . ID=gene-AD39_RS30015;Name=nadS;end_range=83147,.;gbkey=Gene;gene=nadS;gene_biotype=pseudogene;locus_tag=AD39_RS30015;partial=true;pseudo=true;start_range=.,83040 NZ_JJLH01000069.1 Protein Homology CDS 83040 83147 . + 0 ID=cds-AD39_RS30015;Parent=gene-AD39_RS30015;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=83147,.;gbkey=CDS;gene=nadS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000007431.1;locus_tag=AD39_RS30015;partial=true;product=NadS family protein;pseudo=true;start_range=.,83040;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 83308 84975 . - . ID=gene-AD39_RS00575;Name=ettA;gbkey=Gene;gene=ettA;gene_biotype=protein_coding;locus_tag=AD39_RS00575;old_locus_tag=AD39_5039 NZ_JJLH01000069.1 Protein Homology CDS 83308 84975 . - 0 ID=cds-WP_000046749.1;Parent=gene-AD39_RS00575;Dbxref=GenBank:WP_000046749.1;Name=WP_000046749.1;Ontology_term=GO:0045900,GO:0005524;gbkey=CDS;gene=ettA;go_function=ATP binding|0005524||IEA;go_process=negative regulation of translational elongation|0045900||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_017145039.1;locus_tag=AD39_RS00575;product=energy-dependent translational throttle protein EttA;protein_id=WP_000046749.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 85186 87123 . + . ID=gene-AD39_RS00570;Name=sltY;gbkey=Gene;gene=sltY;gene_biotype=protein_coding;locus_tag=AD39_RS00570;old_locus_tag=AD39_5041 NZ_JJLH01000069.1 Protein Homology CDS 85186 87123 . + 0 ID=cds-WP_032206580.1;Parent=gene-AD39_RS00570;Dbxref=GenBank:WP_032206580.1;Name=WP_032206580.1;Ontology_term=GO:0000270,GO:0004553,GO:0008933,GO:0016020,GO:0042597;gbkey=CDS;gene=sltY;go_component=membrane|0016020||IEA,periplasmic space|0042597||IEA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA,peptidoglycan lytic transglycosylase activity|0008933||IEA;go_process=peptidoglycan metabolic process|0000270||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418809.4;locus_tag=AD39_RS00570;product=murein transglycosylase;protein_id=WP_032206580.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 87213 87539 . + . ID=gene-AD39_RS00565;Name=trpR;gbkey=Gene;gene=trpR;gene_biotype=protein_coding;locus_tag=AD39_RS00565;old_locus_tag=AD39_5042 NZ_JJLH01000069.1 Protein Homology CDS 87213 87539 . + 0 ID=cds-WP_000068679.1;Parent=gene-AD39_RS00565;Dbxref=GenBank:WP_000068679.1;Name=WP_000068679.1;Ontology_term=GO:0006355,GO:0003700,GO:0043565;gbkey=CDS;gene=trpR;go_function=DNA-binding transcription factor activity|0003700||IEA,sequence-specific DNA binding|0043565||IEA;go_process=regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418810.1;locus_tag=AD39_RS00565;product=trp operon repressor;protein_id=WP_000068679.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 87581 88093 . - . ID=gene-AD39_RS00560;Name=yjjX;gbkey=Gene;gene=yjjX;gene_biotype=protein_coding;locus_tag=AD39_RS00560;old_locus_tag=AD39_5043 NZ_JJLH01000069.1 Protein Homology CDS 87581 88093 . - 0 ID=cds-WP_001338221.1;Parent=gene-AD39_RS00560;Dbxref=GenBank:WP_001338221.1;Name=WP_001338221.1;gbkey=CDS;gene=yjjX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418811.2;locus_tag=AD39_RS00560;product=inosine/xanthosine triphosphatase;protein_id=WP_001338221.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 88145 88792 . + . ID=gene-AD39_RS00555;Name=gpmB;gbkey=Gene;gene=gpmB;gene_biotype=protein_coding;locus_tag=AD39_RS00555;old_locus_tag=AD39_5044 NZ_JJLH01000069.1 Protein Homology CDS 88145 88792 . + 0 ID=cds-WP_000942344.1;Parent=gene-AD39_RS00555;Dbxref=GenBank:WP_000942344.1;Name=WP_000942344.1;Ontology_term=GO:0006096,GO:0004619;gbkey=CDS;gene=gpmB;go_function=phosphoglycerate mutase activity|0004619||IEA;go_process=glycolytic process|0006096||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313380.1;locus_tag=AD39_RS00555;product=2%2C3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB;protein_id=WP_000942344.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 88789 89658 . - . ID=gene-AD39_RS00550;Name=robA;gbkey=Gene;gene=robA;gene_biotype=protein_coding;locus_tag=AD39_RS00550;old_locus_tag=AD39_5045 NZ_JJLH01000069.1 Protein Homology CDS 88789 89658 . - 0 ID=cds-WP_000371666.1;Parent=gene-AD39_RS00550;Dbxref=GenBank:WP_000371666.1;Name=WP_000371666.1;gbkey=CDS;gene=robA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313381.1;locus_tag=AD39_RS00550;product=MDR efflux pump AcrAB transcriptional activator RobA;protein_id=WP_000371666.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 89869 90342 . + . ID=gene-AD39_RS00545;Name=creA;gbkey=Gene;gene=creA;gene_biotype=protein_coding;locus_tag=AD39_RS00545;old_locus_tag=AD39_5046 NZ_JJLH01000069.1 Protein Homology CDS 89869 90342 . + 0 ID=cds-WP_000875487.1;Parent=gene-AD39_RS00545;Dbxref=GenBank:WP_000875487.1;Name=WP_000875487.1;gbkey=CDS;gene=creA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313382.1;locus_tag=AD39_RS00545;product=protein CreA;protein_id=WP_000875487.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 90355 91044 . + . ID=gene-AD39_RS00540;Name=creB;gbkey=Gene;gene=creB;gene_biotype=protein_coding;locus_tag=AD39_RS00540;old_locus_tag=AD39_5047 NZ_JJLH01000069.1 Protein Homology CDS 90355 91044 . + 0 ID=cds-WP_032287668.1;Parent=gene-AD39_RS00540;Dbxref=GenBank:WP_032287668.1;Name=WP_032287668.1;Ontology_term=GO:0000160,GO:0006355,GO:0003677;gbkey=CDS;gene=creB;go_function=DNA binding|0003677||IEA;go_process=phosphorelay signal transduction system|0000160||IEA,regulation of DNA-templated transcription|0006355||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710136.1;locus_tag=AD39_RS00540;product=two-component system response regulator CreB;protein_id=WP_032287668.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 91044 92468 . + . ID=gene-AD39_RS00535;Name=creC;gbkey=Gene;gene=creC;gene_biotype=protein_coding;locus_tag=AD39_RS00535;old_locus_tag=AD39_5048 NZ_JJLH01000069.1 Protein Homology CDS 91044 92468 . + 0 ID=cds-WP_001219611.1;Parent=gene-AD39_RS00535;Dbxref=GenBank:WP_001219611.1;Name=WP_001219611.1;Ontology_term=GO:0007165,GO:0016310,GO:0000155,GO:0016020;gbkey=CDS;gene=creC;go_component=membrane|0016020||IEA;go_function=phosphorelay sensor kinase activity|0000155||IEA;go_process=signal transduction|0007165||IEA,phosphorylation|0016310||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_313384.1;locus_tag=AD39_RS00535;product=two-component system sensor histidine kinase CreC;protein_id=WP_001219611.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 92526 93878 . + . ID=gene-AD39_RS00530;Name=creD;gbkey=Gene;gene=creD;gene_biotype=protein_coding;locus_tag=AD39_RS00530;old_locus_tag=AD39_5049 NZ_JJLH01000069.1 Protein Homology CDS 92526 93878 . + 0 ID=cds-WP_000920337.1;Parent=gene-AD39_RS00530;Dbxref=GenBank:WP_000920337.1;Name=WP_000920337.1;gbkey=CDS;gene=creD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710138.1;locus_tag=AD39_RS00530;product=cell envelope integrity protein CreD;protein_id=WP_000920337.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 93938 94654 . - . ID=gene-AD39_RS00525;Name=arcA;gbkey=Gene;gene=arcA;gene_biotype=protein_coding;locus_tag=AD39_RS00525;old_locus_tag=AD39_5050 NZ_JJLH01000069.1 Protein Homology CDS 93938 94654 . - 0 ID=cds-WP_001194358.1;Parent=gene-AD39_RS00525;Dbxref=GenBank:WP_001194358.1;Name=WP_001194358.1;gbkey=CDS;gene=arcA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003621071.1;locus_tag=AD39_RS00525;product=two-component system response regulator ArcA;protein_id=WP_001194358.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 94750 94890 . + . ID=gene-AD39_RS0125860;Name=yjjY;gbkey=Gene;gene=yjjY;gene_biotype=protein_coding;locus_tag=AD39_RS0125860 NZ_JJLH01000069.1 Protein Homology CDS 94750 94890 . + 0 ID=cds-WP_001303782.1;Parent=gene-AD39_RS0125860;Dbxref=GenBank:WP_001303782.1;Name=WP_001303782.1;gbkey=CDS;gene=yjjY;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418819.1;locus_tag=AD39_RS0125860;product=protein YjjY;protein_id=WP_001303782.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 95290 95976 . + . ID=gene-AD39_RS00520;Name=yjtD;gbkey=Gene;gene=yjtD;gene_biotype=protein_coding;locus_tag=AD39_RS00520;old_locus_tag=AD39_5051 NZ_JJLH01000069.1 Protein Homology CDS 95290 95976 . + 0 ID=cds-WP_001223177.1;Parent=gene-AD39_RS00520;Dbxref=GenBank:WP_001223177.1;Name=WP_001223177.1;gbkey=CDS;gene=yjtD;inference=COORDINATES: similar to AA sequence:RefSeq:NP_710140.2;locus_tag=AD39_RS00520;product=tRNA/rRNA methyltransferase;protein_id=WP_001223177.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 96190 96255 . + . ID=gene-AD39_RS0125865;Name=thrL;gbkey=Gene;gene=thrL;gene_biotype=protein_coding;locus_tag=AD39_RS0125865 NZ_JJLH01000069.1 Protein Homology CDS 96190 96255 . + 0 ID=cds-WP_001386572.1;Parent=gene-AD39_RS0125865;Dbxref=GenBank:WP_001386572.1;Name=WP_001386572.1;gbkey=CDS;gene=thrL;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414542.1;locus_tag=AD39_RS0125865;product=thr operon leader peptide;protein_id=WP_001386572.1;transl_table=11 NZ_JJLH01000069.1 cmsearch sequence_feature 96191 96310 . + . ID=id-NZ_JJLH01000069.1:96191..96310;Dbxref=RFAM:RF00506;Note=Thr leader region;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5 NZ_JJLH01000069.1 RefSeq gene 96336 98798 . + . ID=gene-AD39_RS00515;Name=thrA;gbkey=Gene;gene=thrA;gene_biotype=protein_coding;locus_tag=AD39_RS00515;old_locus_tag=AD39_5052 NZ_JJLH01000069.1 Protein Homology CDS 96336 98798 . + 0 ID=cds-WP_010791668.1;Parent=gene-AD39_RS00515;Dbxref=GenBank:WP_010791668.1;Name=WP_010791668.1;Ontology_term=GO:0008652,GO:0009067,GO:0004072,GO:0004412,GO:0050661;gbkey=CDS;gene=thrA;go_function=aspartate kinase activity|0004072||IEA,homoserine dehydrogenase activity|0004412||IEA,NADP binding|0050661||IEA;go_process=amino acid biosynthetic process|0008652||IEA,aspartate family amino acid biosynthetic process|0009067||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005124053.1;locus_tag=AD39_RS00515;product=bifunctional aspartate kinase/homoserine dehydrogenase I;protein_id=WP_010791668.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 98800 99732 . + . ID=gene-AD39_RS00510;Name=thrB;gbkey=Gene;gene=thrB;gene_biotype=protein_coding;locus_tag=AD39_RS00510;old_locus_tag=AD39_5053 NZ_JJLH01000069.1 Protein Homology CDS 98800 99732 . + 0 ID=cds-WP_000241660.1;Parent=gene-AD39_RS00510;Dbxref=GenBank:WP_000241660.1;Name=WP_000241660.1;Ontology_term=GO:0009088,GO:0004413,GO:0005524;gbkey=CDS;gene=thrB;go_function=homoserine kinase activity|0004413||IEA,ATP binding|0005524||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308030.1;locus_tag=AD39_RS00510;product=homoserine kinase;protein_id=WP_000241660.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 99733 101019 . + . ID=gene-AD39_RS00505;Name=thrC;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;locus_tag=AD39_RS00505;old_locus_tag=AD39_5054 NZ_JJLH01000069.1 Protein Homology CDS 99733 101019 . + 0 ID=cds-WP_000781063.1;Parent=gene-AD39_RS00505;Dbxref=GenBank:WP_000781063.1;Name=WP_000781063.1;Ontology_term=GO:0009088,GO:0004795;gbkey=CDS;gene=thrC;go_function=threonine synthase activity|0004795||IEA;go_process=threonine biosynthetic process|0009088||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_308031.1;locus_tag=AD39_RS00505;product=threonine synthase;protein_id=WP_000781063.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 101233 101529 . + . ID=gene-AD39_RS0125875;Name=yaaX;gbkey=Gene;gene=yaaX;gene_biotype=protein_coding;locus_tag=AD39_RS0125875 NZ_JJLH01000069.1 Protein Homology CDS 101233 101529 . + 0 ID=cds-WP_000738723.1;Parent=gene-AD39_RS0125875;Dbxref=GenBank:WP_000738723.1;Name=WP_000738723.1;gbkey=CDS;gene=yaaX;inference=COORDINATES: similar to AA sequence:RefSeq:NP_414546.1;locus_tag=AD39_RS0125875;product=DUF2502 domain-containing protein;protein_id=WP_000738723.1;transl_table=11 NZ_JJLH01000069.1 RefSeq gene 101788 102768 . + . ID=gene-AD39_RS00500;Name=AD39_RS00500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00500;old_locus_tag=AD39_5056 NZ_JJLH01000069.1 Protein Homology CDS 101788 102768 . + 0 ID=cds-WP_000399648.1-4;Parent=gene-AD39_RS00500;Dbxref=GenBank:WP_000399648.1;Name=WP_000399648.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_012904434.1;locus_tag=AD39_RS00500;product=IS110-like element IS621 family transposase;protein_id=WP_000399648.1;transl_table=11 ##sequence-region NZ_JJLH01000070.1 1 9067 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000070.1 RefSeq region 1 9067 . + . ID=NZ_JJLH01000070.1:1..9067;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000070.1 RefSeq gene 1 1446 . - . ID=gene-AD39_RS0125880;Name=AD39_RS0125880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125880;partial=true;start_range=.,1 NZ_JJLH01000070.1 Protein Homology CDS 1 1446 . - 0 ID=cds-WP_032287670.1;Parent=gene-AD39_RS0125880;Dbxref=GenBank:WP_032287670.1;Name=WP_032287670.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_415890.2;locus_tag=AD39_RS0125880;partial=true;product=prophage tail fiber N-terminal domain-containing protein;protein_id=WP_032287670.1;start_range=.,1;transl_table=11 NZ_JJLH01000070.1 RefSeq gene 1598 2197 . - . ID=gene-AD39_RS00495;Name=AD39_RS00495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00495;old_locus_tag=AD39_5059 NZ_JJLH01000070.1 Protein Homology CDS 1598 2197 . - 0 ID=cds-WP_001233190.1;Parent=gene-AD39_RS00495;Dbxref=GenBank:WP_001233190.1;Name=WP_001233190.1;Ontology_term=GO:0044384;gbkey=CDS;go_component=host outer membrane|0044384||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706647.1;locus_tag=AD39_RS00495;product=Ail/Lom family outer membrane beta-barrel protein;protein_id=WP_001233190.1;transl_table=11 NZ_JJLH01000070.1 RefSeq gene 2265 5744 . - . ID=gene-AD39_RS00490;Name=gpJ;gbkey=Gene;gene=gpJ;gene_biotype=protein_coding;locus_tag=AD39_RS00490;old_locus_tag=AD39_5060 NZ_JJLH01000070.1 Protein Homology CDS 2265 5744 . - 0 ID=cds-WP_032283091.1;Parent=gene-AD39_RS00490;Dbxref=GenBank:WP_032283091.1;Name=WP_032283091.1;gbkey=CDS;gene=gpJ;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706646.1;locus_tag=AD39_RS00490;product=phage attachment tail tip protein J;protein_id=WP_032283091.1;transl_table=11 NZ_JJLH01000070.1 RefSeq gene 5811 6149 . - . ID=gene-AD39_RS29550;Name=AD39_RS29550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29550;old_locus_tag=AD39_5061 NZ_JJLH01000070.1 Protein Homology CDS 5811 6149 . - 0 ID=cds-WP_001332187.1;Parent=gene-AD39_RS29550;Dbxref=GenBank:WP_001332187.1;Name=WP_001332187.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001332187.1;locus_tag=AD39_RS29550;product=hypothetical protein;protein_id=WP_001332187.1;transl_table=11 NZ_JJLH01000070.1 RefSeq gene 6223 6798 . - . ID=gene-AD39_RS00485;Name=AD39_RS00485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00485;old_locus_tag=AD39_5062 NZ_JJLH01000070.1 Protein Homology CDS 6223 6798 . - 0 ID=cds-WP_119682227.1;Parent=gene-AD39_RS00485;Dbxref=GenBank:WP_119682227.1;Name=WP_119682227.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706645.1;locus_tag=AD39_RS00485;product=tail assembly protein;protein_id=WP_119682227.1;transl_table=11 NZ_JJLH01000070.1 RefSeq gene 6762 7505 . - . ID=gene-AD39_RS00480;Name=AD39_RS00480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00480;old_locus_tag=AD39_5063 NZ_JJLH01000070.1 Protein Homology CDS 6762 7505 . - 0 ID=cds-WP_032283090.1;Parent=gene-AD39_RS00480;Dbxref=GenBank:WP_032283090.1;Name=WP_032283090.1;Ontology_term=GO:0006508,GO:0008234,GO:0008235,GO:0008270;gbkey=CDS;go_function=cysteine-type peptidase activity|0008234||IEA,metalloexopeptidase activity|0008235||IEA,zinc ion binding|0008270||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309673.1;locus_tag=AD39_RS00480;product=C40 family peptidase;protein_id=WP_032283090.1;transl_table=11 NZ_JJLH01000070.1 RefSeq gene 7510 8208 . - . ID=gene-AD39_RS00475;Name=AD39_RS00475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00475;old_locus_tag=AD39_5064 NZ_JJLH01000070.1 Protein Homology CDS 7510 8208 . - 0 ID=cds-WP_001152522.1;Parent=gene-AD39_RS00475;Dbxref=GenBank:WP_001152522.1;Name=WP_001152522.1;Ontology_term=GO:0046718,GO:0051536,GO:0030430;gbkey=CDS;go_component=host cell cytoplasm|0030430||IEA;go_function=iron-sulfur cluster binding|0051536||IEA;go_process=symbiont entry into host cell|0046718||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309672.1;locus_tag=AD39_RS00475;product=phage minor tail protein L;protein_id=WP_001152522.1;transl_table=11 NZ_JJLH01000070.1 RefSeq gene 8208 8537 . - . ID=gene-AD39_RS00470;Name=AD39_RS00470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00470;old_locus_tag=AD39_5065 NZ_JJLH01000070.1 Protein Homology CDS 8208 8537 . - 0 ID=cds-WP_000847402.1-2;Parent=gene-AD39_RS00470;Dbxref=GenBank:WP_000847402.1;Name=WP_000847402.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309671.1;locus_tag=AD39_RS00470;product=phage tail protein;protein_id=WP_000847402.1;transl_table=11 NZ_JJLH01000070.1 RefSeq gene 8534 9067 . - . ID=gene-AD39_RS00465;Name=AD39_RS00465;end_range=9067,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00465;old_locus_tag=AD39_5066;partial=true NZ_JJLH01000070.1 Protein Homology CDS 8534 9067 . - 0 ID=cds-WP_071998896.1;Parent=gene-AD39_RS00465;Dbxref=GenBank:WP_071998896.1;Name=WP_071998896.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;end_range=9067,.;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309670.1;locus_tag=AD39_RS00465;partial=true;product=phage tail tape measure protein;protein_id=WP_071998896.1;transl_table=11 ##sequence-region NZ_JJLH01000071.1 1 1947 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000071.1 RefSeq region 1 1947 . + . ID=NZ_JJLH01000071.1:1..1947;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000071.1 RefSeq gene 131 246 . + . ID=gene-AD39_RS00460;Name=rrf;gbkey=Gene;gene=rrf;gene_biotype=rRNA;locus_tag=AD39_RS00460;old_locus_tag=AD39_5067 NZ_JJLH01000071.1 cmsearch rRNA 131 246 . + . ID=rna-AD39_RS00460;Parent=gene-AD39_RS00460;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS00460;product=5S ribosomal RNA NZ_JJLH01000071.1 cmsearch exon 131 246 . + . ID=exon-AD39_RS00460-1;Parent=rna-AD39_RS00460;Dbxref=RFAM:RF00001;gbkey=rRNA;gene=rrf;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS00460;product=5S ribosomal RNA NZ_JJLH01000071.1 RefSeq gene 361 804 . - . ID=gene-AD39_RS00455;Name=AD39_RS00455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00455;old_locus_tag=AD39_5068 NZ_JJLH01000071.1 Protein Homology CDS 361 804 . - 0 ID=cds-WP_000236960.1-2;Parent=gene-AD39_RS00455;Dbxref=GenBank:WP_000236960.1;Name=WP_000236960.1;Ontology_term=GO:0008080;gbkey=CDS;go_function=N-acetyltransferase activity|0008080||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_312957.1;locus_tag=AD39_RS00455;product=acetyltransferase;protein_id=WP_000236960.1;transl_table=11 NZ_JJLH01000071.1 RefSeq gene 961 1890 . + . ID=gene-AD39_RS00450;Name=metA;gbkey=Gene;gene=metA;gene_biotype=protein_coding;locus_tag=AD39_RS00450;old_locus_tag=AD39_5069 NZ_JJLH01000071.1 Protein Homology CDS 961 1890 . + 0 ID=cds-WP_001122789.1-2;Parent=gene-AD39_RS00450;Dbxref=GenBank:WP_001122789.1;Name=WP_001122789.1;Ontology_term=GO:0019281,GO:0008899,GO:0005737;gbkey=CDS;gene=metA;go_component=cytoplasm|0005737||IEA;go_function=homoserine O-succinyltransferase activity|0008899||IEA;go_process=L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine|0019281||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_005132837.1;locus_tag=AD39_RS00450;product=homoserine O-acetyltransferase MetA;protein_id=WP_001122789.1;transl_table=11 ##sequence-region NZ_JJLH01000072.1 1 4566 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000072.1 RefSeq region 1 4566 . + . ID=NZ_JJLH01000072.1:1..4566;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000072.1 RefSeq pseudogene 1 150 . - . ID=gene-AD39_RS26105;Name=AD39_RS26105;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS26105;old_locus_tag=AD39_5070;partial=true;pseudo=true;start_range=.,1 NZ_JJLH01000072.1 Protein Homology CDS 1 150 . - 0 ID=cds-AD39_RS26105;Parent=gene-AD39_RS26105;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309672.1;locus_tag=AD39_RS26105;partial=true;product=phage minor tail protein L;pseudo=true;start_range=.,1;transl_table=11 NZ_JJLH01000072.1 RefSeq gene 150 479 . - . ID=gene-AD39_RS00445;Name=AD39_RS00445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00445;old_locus_tag=AD39_5071 NZ_JJLH01000072.1 Protein Homology CDS 150 479 . - 0 ID=cds-WP_000847402.1-3;Parent=gene-AD39_RS00445;Dbxref=GenBank:WP_000847402.1;Name=WP_000847402.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309671.1;locus_tag=AD39_RS00445;product=phage tail protein;protein_id=WP_000847402.1;transl_table=11 NZ_JJLH01000072.1 RefSeq gene 476 3049 . - . ID=gene-AD39_RS00440;Name=AD39_RS00440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00440;old_locus_tag=AD39_5072 NZ_JJLH01000072.1 Protein Homology CDS 476 3049 . - 0 ID=cds-WP_032283727.1;Parent=gene-AD39_RS00440;Dbxref=GenBank:WP_032283727.1;Name=WP_032283727.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309141.1;locus_tag=AD39_RS00440;product=phage tail tape measure protein;protein_id=WP_032283727.1;transl_table=11 NZ_JJLH01000072.1 RefSeq gene 3030 3443 . - . ID=gene-AD39_RS00435;Name=AD39_RS00435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00435;old_locus_tag=AD39_5073 NZ_JJLH01000072.1 Protein Homology CDS 3030 3443 . - 0 ID=cds-WP_024168287.1;Parent=gene-AD39_RS00435;Dbxref=GenBank:WP_024168287.1;Name=WP_024168287.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309140.2;locus_tag=AD39_RS00435;product=phage tail assembly protein T;protein_id=WP_024168287.1;transl_table=11 NZ_JJLH01000072.1 RefSeq gene 3470 3901 . - . ID=gene-AD39_RS00430;Name=gpG;gbkey=Gene;gene=gpG;gene_biotype=protein_coding;locus_tag=AD39_RS00430;old_locus_tag=AD39_5074 NZ_JJLH01000072.1 Protein Homology CDS 3470 3901 . - 0 ID=cds-WP_000479095.1;Parent=gene-AD39_RS00430;Dbxref=GenBank:WP_000479095.1;Name=WP_000479095.1;gbkey=CDS;gene=gpG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310755.1;locus_tag=AD39_RS00430;product=phage tail assembly chaperone G;protein_id=WP_000479095.1;transl_table=11 NZ_JJLH01000072.1 RefSeq gene 3915 4566 . - . ID=gene-AD39_RS00425;Name=AD39_RS00425;end_range=4566,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00425;old_locus_tag=AD39_5075;partial=true NZ_JJLH01000072.1 Protein Homology CDS 3915 4566 . - 1 ID=cds-WP_032287671.1;Parent=gene-AD39_RS00425;Dbxref=GenBank:WP_032287671.1;Name=WP_032287671.1;end_range=4566,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310196.1;locus_tag=AD39_RS00425;partial=true;product=phage tail protein;protein_id=WP_032287671.1;transl_table=11 ##sequence-region NZ_JJLH01000073.1 1 451 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000073.1 RefSeq region 1 451 . + . ID=NZ_JJLH01000073.1:1..451;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000073.1 RefSeq gene 1 451 . - . ID=gene-AD39_RS0125885;Name=AD39_RS0125885;end_range=451,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125885;old_locus_tag=AD39_5076;partial=true;start_range=.,1 NZ_JJLH01000073.1 Protein Homology CDS 1 451 . - 2 ID=cds-WP_032287673.1;Parent=gene-AD39_RS0125885;Dbxref=GenBank:WP_032287673.1;Name=WP_032287673.1;Ontology_term=GO:0006468,GO:0019748,GO:0016773;end_range=451,.;gbkey=CDS;go_function=phosphotransferase activity%2C alcohol group as acceptor|0016773||IEA;go_process=protein phosphorylation|0006468||IEA,secondary metabolic process|0019748||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1;locus_tag=AD39_RS0125885;partial=true;product=aminoglycoside phosphotransferase family protein;protein_id=WP_032287673.1;start_range=.,1;transl_table=11 ##sequence-region NZ_JJLH01000074.1 1 7509 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000074.1 RefSeq region 1 7509 . + . ID=NZ_JJLH01000074.1:1..7509;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000074.1 RefSeq gene 1 290 . - . ID=gene-AD39_RS00420;Name=AD39_RS00420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00420;old_locus_tag=AD39_5077;partial=true;start_range=.,1 NZ_JJLH01000074.1 Protein Homology CDS 1 290 . - 0 ID=cds-WP_032287674.1;Parent=gene-AD39_RS00420;Dbxref=GenBank:WP_032287674.1;Name=WP_032287674.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309141.1;locus_tag=AD39_RS00420;partial=true;product=phage tail length tape measure family protein;protein_id=WP_032287674.1;start_range=.,1;transl_table=11 NZ_JJLH01000074.1 RefSeq gene 271 684 . - . ID=gene-AD39_RS00415;Name=AD39_RS00415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00415;old_locus_tag=AD39_5078 NZ_JJLH01000074.1 Protein Homology CDS 271 684 . - 0 ID=cds-WP_000533402.1;Parent=gene-AD39_RS00415;Dbxref=GenBank:WP_000533402.1;Name=WP_000533402.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309140.2;locus_tag=AD39_RS00415;product=phage tail assembly protein T;protein_id=WP_000533402.1;transl_table=11 NZ_JJLH01000074.1 RefSeq gene 711 1142 . - . ID=gene-AD39_RS00410;Name=gpG;gbkey=Gene;gene=gpG;gene_biotype=protein_coding;locus_tag=AD39_RS00410;old_locus_tag=AD39_5079 NZ_JJLH01000074.1 Protein Homology CDS 711 1142 . - 0 ID=cds-WP_000479095.1-2;Parent=gene-AD39_RS00410;Dbxref=GenBank:WP_000479095.1;Name=WP_000479095.1;gbkey=CDS;gene=gpG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310755.1;locus_tag=AD39_RS00410;product=phage tail assembly chaperone G;protein_id=WP_000479095.1;transl_table=11 NZ_JJLH01000074.1 RefSeq gene 1156 1908 . - . ID=gene-AD39_RS00405;Name=AD39_RS00405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00405;old_locus_tag=AD39_5080 NZ_JJLH01000074.1 Protein Homology CDS 1156 1908 . - 0 ID=cds-WP_000235040.1;Parent=gene-AD39_RS00405;Dbxref=GenBank:WP_000235040.1;Name=WP_000235040.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310196.1;locus_tag=AD39_RS00405;product=phage tail protein;protein_id=WP_000235040.1;transl_table=11 NZ_JJLH01000074.1 RefSeq gene 1916 2311 . - . ID=gene-AD39_RS00400;Name=AD39_RS00400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00400;old_locus_tag=AD39_5081 NZ_JJLH01000074.1 Protein Homology CDS 1916 2311 . - 0 ID=cds-WP_000683079.1;Parent=gene-AD39_RS00400;Dbxref=GenBank:WP_000683079.1;Name=WP_000683079.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310197.1;locus_tag=AD39_RS00400;product=phage minor tail U family protein;protein_id=WP_000683079.1;transl_table=11 NZ_JJLH01000074.1 RefSeq gene 2308 2841 . - . ID=gene-AD39_RS00395;Name=AD39_RS00395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00395;old_locus_tag=AD39_5082 NZ_JJLH01000074.1 Protein Homology CDS 2308 2841 . - 0 ID=cds-WP_032287675.1;Parent=gene-AD39_RS00395;Dbxref=GenBank:WP_032287675.1;Name=WP_032287675.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310198.1;locus_tag=AD39_RS00395;product=phage tail protein;protein_id=WP_032287675.1;transl_table=11 NZ_JJLH01000074.1 RefSeq gene 2857 3210 . - . ID=gene-AD39_RS00390;Name=AD39_RS00390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00390;old_locus_tag=AD39_5083 NZ_JJLH01000074.1 Protein Homology CDS 2857 3210 . - 0 ID=cds-WP_032287676.1;Parent=gene-AD39_RS00390;Dbxref=GenBank:WP_032287676.1;Name=WP_032287676.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001204533.1;locus_tag=AD39_RS00390;product=head-tail joining protein;protein_id=WP_032287676.1;transl_table=11 NZ_JJLH01000074.1 RefSeq gene 3203 3574 . - . ID=gene-AD39_RS00385;Name=gpFI;gbkey=Gene;gene=gpFI;gene_biotype=protein_coding;locus_tag=AD39_RS00385;old_locus_tag=AD39_5084 NZ_JJLH01000074.1 Protein Homology CDS 3203 3574 . - 0 ID=cds-WP_032287677.1;Parent=gene-AD39_RS00385;Dbxref=GenBank:WP_032287677.1;Name=WP_032287677.1;gbkey=CDS;gene=gpFI;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000201507.1;locus_tag=AD39_RS00385;product=DNA-packaging protein FI;protein_id=WP_032287677.1;transl_table=11 NZ_JJLH01000074.1 RefSeq pseudogene 3626 4653 . - . ID=gene-AD39_RS0125890;Name=AD39_RS0125890;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125890;pseudo=true NZ_JJLH01000074.1 Protein Homology CDS 3626 4653 . - 0 ID=cds-AD39_RS0125890;Parent=gene-AD39_RS0125890;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706633.1;locus_tag=AD39_RS0125890;product=major capsid protein;pseudo=true;transl_table=11 NZ_JJLH01000074.1 RefSeq gene 4711 5058 . - . ID=gene-AD39_RS00380;Name=AD39_RS00380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00380;old_locus_tag=AD39_5087 NZ_JJLH01000074.1 Protein Homology CDS 4711 5058 . - 0 ID=cds-WP_000256823.1;Parent=gene-AD39_RS00380;Dbxref=GenBank:WP_000256823.1;Name=WP_000256823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309136.1;locus_tag=AD39_RS00380;product=head decoration protein;protein_id=WP_000256823.1;transl_table=11 NZ_JJLH01000074.1 RefSeq gene 5095 6600 . - . ID=gene-AD39_RS00375;Name=AD39_RS00375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00375;old_locus_tag=AD39_5088 NZ_JJLH01000074.1 Protein Homology CDS 5095 6600 . - 0 ID=cds-WP_032266318.1;Parent=gene-AD39_RS00375;Dbxref=GenBank:WP_032266318.1;Name=WP_032266318.1;Ontology_term=GO:0006508,GO:0008233,GO:0008236;gbkey=CDS;go_function=peptidase activity|0008233||IEA,serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309135.1;locus_tag=AD39_RS00375;product=S49 family peptidase;protein_id=WP_032266318.1;transl_table=11 NZ_JJLH01000074.1 RefSeq gene 6590 7509 . - . ID=gene-AD39_RS00370;Name=AD39_RS00370;end_range=7509,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00370;old_locus_tag=AD39_5089;partial=true NZ_JJLH01000074.1 Protein Homology CDS 6590 7509 . - 2 ID=cds-WP_032287678.1;Parent=gene-AD39_RS00370;Dbxref=GenBank:WP_032287678.1;Name=WP_032287678.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;end_range=7509,.;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309134.1;locus_tag=AD39_RS00370;partial=true;product=phage portal protein;protein_id=WP_032287678.1;transl_table=11 ##sequence-region NZ_JJLH01000075.1 1 1135 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000075.1 RefSeq region 1 1135 . + . ID=NZ_JJLH01000075.1:1..1135;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000075.1 RefSeq gene 147 1135 . + . ID=gene-AD39_RS00365;Name=AD39_RS00365;end_range=1135,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS00365;old_locus_tag=AD39_5090;partial=true NZ_JJLH01000075.1 cmsearch rRNA 147 1135 . + . ID=rna-AD39_RS00365;Parent=gene-AD39_RS00365;Dbxref=RFAM:RF00177;end_range=1135,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS00365;partial=true;product=16S ribosomal RNA NZ_JJLH01000075.1 cmsearch exon 147 1135 . + . ID=exon-AD39_RS00365-1;Parent=rna-AD39_RS00365;Dbxref=RFAM:RF00177;end_range=1135,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS00365;partial=true;product=16S ribosomal RNA ##sequence-region NZ_JJLH01000076.1 1 1953 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000076.1 RefSeq region 1 1953 . + . ID=NZ_JJLH01000076.1:1..1953;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000076.1 RefSeq pseudogene 1 221 . + . ID=gene-AD39_RS0125895;Name=AD39_RS0125895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125895;partial=true;pseudo=true;start_range=.,1 NZ_JJLH01000076.1 Protein Homology CDS 1 221 . + 2 ID=cds-AD39_RS0125895;Parent=gene-AD39_RS0125895;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343071.1;locus_tag=AD39_RS0125895;partial=true;product=mobilome CxxCx(11)CxxC protein;pseudo=true;start_range=.,1;transl_table=11 NZ_JJLH01000076.1 RefSeq gene 234 446 . + . ID=gene-AD39_RS0125900;Name=AD39_RS0125900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125900 NZ_JJLH01000076.1 Protein Homology CDS 234 446 . + 0 ID=cds-WP_000092896.1-2;Parent=gene-AD39_RS0125900;Dbxref=GenBank:WP_000092896.1;Name=WP_000092896.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000092896.1;locus_tag=AD39_RS0125900;product=hypothetical protein;protein_id=WP_000092896.1;transl_table=11 NZ_JJLH01000076.1 RefSeq gene 707 1675 . - . ID=gene-AD39_RS0125905;Name=AD39_RS0125905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125905 NZ_JJLH01000076.1 Protein Homology CDS 707 1675 . - 0 ID=cds-WP_032283463.1-2;Parent=gene-AD39_RS0125905;Dbxref=GenBank:WP_032283463.1;Name=WP_032283463.1;Ontology_term=GO:0006313,GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;go_process=DNA transposition|0006313||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_033635647.1;locus_tag=AD39_RS0125905;product=IS110-like element ISEc32 family transposase;protein_id=WP_032283463.1;transl_table=11 NZ_JJLH01000076.1 RefSeq gene 1696 1953 . + . ID=gene-AD39_RS00360;Name=AD39_RS00360;end_range=1953,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00360;old_locus_tag=AD39_5093;partial=true NZ_JJLH01000076.1 Protein Homology CDS 1696 1953 . + 0 ID=cds-WP_024181402.1-2;Parent=gene-AD39_RS00360;Dbxref=GenBank:WP_024181402.1;Name=WP_024181402.1;end_range=1953,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611947.1;locus_tag=AD39_RS00360;partial=true;product=IS3 family transposase;protein_id=WP_024181402.1;transl_table=11 ##sequence-region NZ_JJLH01000077.1 1 587 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000077.1 RefSeq region 1 587 . + . ID=NZ_JJLH01000077.1:1..587;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000077.1 RefSeq gene 1 318 . - . ID=gene-AD39_RS00355;Name=AD39_RS00355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00355;old_locus_tag=AD39_5094;partial=true;start_range=.,1 NZ_JJLH01000077.1 Protein Homology CDS 1 318 . - 0 ID=cds-WP_032287681.1;Parent=gene-AD39_RS00355;Dbxref=GenBank:WP_032287681.1;Name=WP_032287681.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001241352.1;locus_tag=AD39_RS00355;partial=true;product=Rrf2 family transcriptional regulator;protein_id=WP_032287681.1;start_range=.,1;transl_table=11 ##sequence-region NZ_JJLH01000078.1 1 1824 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000078.1 RefSeq region 1 1824 . + . ID=NZ_JJLH01000078.1:1..1824;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000078.1 RefSeq gene 9 269 . + . ID=gene-AD39_RS00350;Name=flgM;gbkey=Gene;gene=flgM;gene_biotype=protein_coding;locus_tag=AD39_RS00350;old_locus_tag=AD39_5095 NZ_JJLH01000078.1 Protein Homology CDS 9 269 . + 0 ID=cds-WP_032287478.1-2;Parent=gene-AD39_RS00350;Dbxref=GenBank:WP_032287478.1;Name=WP_032287478.1;Ontology_term=GO:0045892;gbkey=CDS;gene=flgM;go_process=negative regulation of DNA-templated transcription|0045892||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001489568.1;locus_tag=AD39_RS00350;product=flagellar biosynthesis anti-sigma factor FlgM;protein_id=WP_032287478.1;transl_table=11 NZ_JJLH01000078.1 RefSeq gene 282 710 . + . ID=gene-AD39_RS00345;Name=flgN;gbkey=Gene;gene=flgN;gene_biotype=protein_coding;locus_tag=AD39_RS00345;old_locus_tag=AD39_5096 NZ_JJLH01000078.1 Protein Homology CDS 282 710 . + 0 ID=cds-WP_024170768.1-3;Parent=gene-AD39_RS00345;Dbxref=GenBank:WP_024170768.1;Name=WP_024170768.1;Ontology_term=GO:0044780,GO:0005515;gbkey=CDS;gene=flgN;go_function=protein binding|0005515||IEA;go_process=bacterial-type flagellum assembly|0044780||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001329715.1;locus_tag=AD39_RS00345;product=flagellar protein FlgN;protein_id=WP_024170768.1;transl_table=11 NZ_JJLH01000078.1 RefSeq gene 837 1766 . + . ID=gene-AD39_RS00340;Name=AD39_RS00340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00340;old_locus_tag=AD39_5097 NZ_JJLH01000078.1 Protein Homology CDS 837 1766 . + 0 ID=cds-WP_001402044.1-3;Parent=gene-AD39_RS00340;Dbxref=GenBank:WP_001402044.1;Name=WP_001402044.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000008086.1;locus_tag=AD39_RS00340;product=hypothetical protein;protein_id=WP_001402044.1;transl_table=11 ##sequence-region NZ_JJLH01000079.1 1 6567 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000079.1 RefSeq region 1 6567 . + . ID=NZ_JJLH01000079.1:1..6567;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000079.1 RefSeq pseudogene 1 158 . + . ID=gene-AD39_RS29900;Name=AD39_RS29900;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29900;old_locus_tag=AD39_5098;partial=true;pseudo=true;start_range=.,1 NZ_JJLH01000079.1 Protein Homology CDS 1 158 . + 2 ID=cds-AD39_RS29900;Parent=gene-AD39_RS29900;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001401945.1;locus_tag=AD39_RS29900;partial=true;product=SymE family type I addiction module toxin;pseudo=true;start_range=.,1;transl_table=11 NZ_JJLH01000079.1 RefSeq gene 223 600 . - . ID=gene-AD39_RS00330;Name=AD39_RS00330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00330;old_locus_tag=AD39_5099 NZ_JJLH01000079.1 Protein Homology CDS 223 600 . - 0 ID=cds-WP_024170874.1;Parent=gene-AD39_RS00330;Dbxref=GenBank:WP_024170874.1;Name=WP_024170874.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016233854.1;locus_tag=AD39_RS00330;product=hypothetical protein;protein_id=WP_024170874.1;transl_table=11 NZ_JJLH01000079.1 RefSeq gene 600 929 . - . ID=gene-AD39_RS28085;Name=AD39_RS28085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28085 NZ_JJLH01000079.1 GeneMarkS-2+ CDS 600 929 . - 0 ID=cds-WP_001725552.1;Parent=gene-AD39_RS28085;Dbxref=GenBank:WP_001725552.1;Name=WP_001725552.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS28085;product=hypothetical protein;protein_id=WP_001725552.1;transl_table=11 NZ_JJLH01000079.1 RefSeq gene 1159 1632 . - . ID=gene-AD39_RS0125910;Name=AD39_RS0125910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125910;old_locus_tag=AD39_5100 NZ_JJLH01000079.1 Protein Homology CDS 1159 1632 . - 0 ID=cds-WP_231357525.1;Parent=gene-AD39_RS0125910;Dbxref=GenBank:WP_231357525.1;Name=WP_231357525.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003576368.1;locus_tag=AD39_RS0125910;product=hypothetical protein;protein_id=WP_231357525.1;transl_table=11 NZ_JJLH01000079.1 RefSeq gene 1941 2996 . - . ID=gene-AD39_RS00325;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=AD39_RS00325;old_locus_tag=AD39_5101 NZ_JJLH01000079.1 Protein Homology CDS 1941 2996 . - 0 ID=cds-WP_032287683.1;Parent=gene-AD39_RS00325;Dbxref=GenBank:WP_032287683.1;Name=WP_032287683.1;gbkey=CDS;gene=xerC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001755634.1;locus_tag=AD39_RS00325;product=site-specific tyrosine recombinase XerC;protein_id=WP_032287683.1;transl_table=11 NZ_JJLH01000079.1 RefSeq gene 3195 5903 . - . ID=gene-AD39_RS00320;Name=AD39_RS00320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00320;old_locus_tag=AD39_5102 NZ_JJLH01000079.1 Protein Homology CDS 3195 5903 . - 0 ID=cds-WP_248785920.1;Parent=gene-AD39_RS00320;Dbxref=GenBank:WP_248785920.1;Name=WP_248785920.1;Ontology_term=GO:0006260,GO:0003677,GO:0003899,GO:0008270;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA,zinc ion binding|0008270||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001755635.1;locus_tag=AD39_RS00320;product=DNA primase;protein_id=WP_248785920.1;transl_table=11 NZ_JJLH01000079.1 RefSeq gene 6024 6422 . + . ID=gene-AD39_RS00315;Name=AD39_RS00315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00315;old_locus_tag=AD39_5103 NZ_JJLH01000079.1 Protein Homology CDS 6024 6422 . + 0 ID=cds-WP_001401944.1;Parent=gene-AD39_RS00315;Dbxref=GenBank:WP_001401944.1;Name=WP_001401944.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001401944.1;locus_tag=AD39_RS00315;product=helix-turn-helix domain-containing protein;protein_id=WP_001401944.1;transl_table=11 NZ_JJLH01000079.1 RefSeq pseudogene 6497 6567 . + . ID=gene-AD39_RS29340;Name=AD39_RS29340;end_range=6567,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29340;partial=true;pseudo=true NZ_JJLH01000079.1 Protein Homology CDS 6497 6567 . + 0 ID=cds-AD39_RS29340;Parent=gene-AD39_RS29340;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=6567,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706526.1;locus_tag=AD39_RS29340;partial=true;product=SymE family type I addiction module toxin;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000080.1 1 2584 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000080.1 RefSeq region 1 2584 . + . ID=NZ_JJLH01000080.1:1..2584;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000080.1 RefSeq gene 1 398 . - . ID=gene-AD39_RS00310;Name=AD39_RS00310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00310;old_locus_tag=AD39_5104;partial=true;start_range=.,1 NZ_JJLH01000080.1 Protein Homology CDS 1 398 . - 0 ID=cds-WP_032285965.1;Parent=gene-AD39_RS00310;Dbxref=GenBank:WP_032285965.1;Name=WP_032285965.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309808.1;locus_tag=AD39_RS00310;partial=true;product=DUF1737 domain-containing protein;protein_id=WP_032285965.1;start_range=.,1;transl_table=11 NZ_JJLH01000080.1 RefSeq pseudogene 1154 1279 . + . ID=gene-AD39_RS29905;Name=AD39_RS29905;end_range=1279,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29905;partial=true;pseudo=true NZ_JJLH01000080.1 Protein Homology CDS 1154 1279 . + 0 ID=cds-AD39_RS29905;Parent=gene-AD39_RS29905;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;end_range=1279,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_013009199.1;locus_tag=AD39_RS29905;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000080.1 RefSeq gene 1375 1451 . - . ID=gene-AD39_RS00305;Name=AD39_RS00305;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS00305;old_locus_tag=AD39_5105 NZ_JJLH01000080.1 tRNAscan-SE tRNA 1375 1451 . - . ID=rna-AD39_RS00305;Parent=gene-AD39_RS00305;anticodon=(pos:complement(1415..1417));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00305;product=tRNA-Arg NZ_JJLH01000080.1 tRNAscan-SE exon 1375 1451 . - . ID=exon-AD39_RS00305-1;Parent=rna-AD39_RS00305;anticodon=(pos:complement(1415..1417));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00305;product=tRNA-Arg NZ_JJLH01000080.1 RefSeq gene 1465 1541 . - . ID=gene-AD39_RS00300;Name=AD39_RS00300;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS00300;old_locus_tag=AD39_5106 NZ_JJLH01000080.1 tRNAscan-SE tRNA 1465 1541 . - . ID=rna-AD39_RS00300;Parent=gene-AD39_RS00300;anticodon=(pos:complement(1505..1507));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00300;product=tRNA-Arg NZ_JJLH01000080.1 tRNAscan-SE exon 1465 1541 . - . ID=exon-AD39_RS00300-1;Parent=rna-AD39_RS00300;anticodon=(pos:complement(1505..1507));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00300;product=tRNA-Arg NZ_JJLH01000080.1 RefSeq gene 1549 1624 . - . ID=gene-AD39_RS00295;Name=AD39_RS00295;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS00295;old_locus_tag=AD39_5107 NZ_JJLH01000080.1 tRNAscan-SE tRNA 1549 1624 . - . ID=rna-AD39_RS00295;Parent=gene-AD39_RS00295;anticodon=(pos:complement(1589..1591));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00295;product=tRNA-Ile NZ_JJLH01000080.1 tRNAscan-SE exon 1549 1624 . - . ID=exon-AD39_RS00295-1;Parent=rna-AD39_RS00295;anticodon=(pos:complement(1589..1591));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00295;product=tRNA-Ile NZ_JJLH01000080.1 RefSeq gene 1674 2584 . - . ID=gene-AD39_RS28095;Name=AD39_RS28095;end_range=2584,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28095;old_locus_tag=AD39_5108;partial=true NZ_JJLH01000080.1 Protein Homology CDS 1674 2584 . - 2 ID=cds-WP_032287686.1;Parent=gene-AD39_RS28095;Dbxref=GenBank:WP_032287686.1;Name=WP_032287686.1;end_range=2584,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309807.1;locus_tag=AD39_RS28095;partial=true;product=DNA-methyltransferase;protein_id=WP_032287686.1;transl_table=11 ##sequence-region NZ_JJLH01000081.1 1 363 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000081.1 RefSeq region 1 363 . + . ID=NZ_JJLH01000081.1:1..363;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 ##sequence-region NZ_JJLH01000082.1 1 896 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000082.1 RefSeq region 1 896 . + . ID=NZ_JJLH01000082.1:1..896;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000082.1 RefSeq pseudogene 1 211 . + . ID=gene-AD39_RS0125920;Name=AD39_RS0125920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125920;old_locus_tag=AD39_5109;partial=true;pseudo=true;start_range=.,1 NZ_JJLH01000082.1 Protein Homology CDS 1 211 . + 1 ID=cds-AD39_RS0125920;Parent=gene-AD39_RS0125920;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011161230.1;locus_tag=AD39_RS0125920;partial=true;product=entry exclusion protein 1;pseudo=true;start_range=.,1;transl_table=11 ##sequence-region NZ_JJLH01000083.1 1 358 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000083.1 RefSeq region 1 358 . + . ID=NZ_JJLH01000083.1:1..358;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000083.1 RefSeq pseudogene 164 358 . + . ID=gene-AD39_RS0125925;Name=AD39_RS0125925;end_range=358,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125925;partial=true;pseudo=true NZ_JJLH01000083.1 Protein Homology CDS 164 358 . + 0 ID=cds-AD39_RS0125925;Parent=gene-AD39_RS0125925;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=358,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_061586541.1;locus_tag=AD39_RS0125925;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000084.1 1 6253 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000084.1 RefSeq region 1 6253 . + . ID=NZ_JJLH01000084.1:1..6253;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000084.1 RefSeq gene 1 450 . + . ID=gene-AD39_RS00285;Name=AD39_RS00285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00285;old_locus_tag=AD39_5112;partial=true;start_range=.,1 NZ_JJLH01000084.1 Protein Homology CDS 1 450 . + 0 ID=cds-WP_032287692.1;Parent=gene-AD39_RS00285;Dbxref=GenBank:WP_032287692.1;Name=WP_032287692.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000867575.1;locus_tag=AD39_RS00285;partial=true;product=terminase small subunit;protein_id=WP_032287692.1;start_range=.,1;transl_table=11 NZ_JJLH01000084.1 RefSeq gene 422 2350 . + . ID=gene-AD39_RS00280;Name=AD39_RS00280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00280;old_locus_tag=AD39_5113 NZ_JJLH01000084.1 Protein Homology CDS 422 2350 . + 0 ID=cds-WP_032287693.1;Parent=gene-AD39_RS00280;Dbxref=GenBank:WP_032287693.1;Name=WP_032287693.1;Ontology_term=GO:0004519,GO:0005524,GO:0016887;gbkey=CDS;go_function=endonuclease activity|0004519||IEA,ATP binding|0005524||IEA,ATP hydrolysis activity|0016887||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000622379.1;locus_tag=AD39_RS00280;product=phage terminase large subunit family protein;protein_id=WP_032287693.1;transl_table=11 NZ_JJLH01000084.1 RefSeq gene 2334 2540 . + . ID=gene-AD39_RS00275;Name=AD39_RS00275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00275;old_locus_tag=AD39_5114 NZ_JJLH01000084.1 Protein Homology CDS 2334 2540 . + 0 ID=cds-WP_000259002.1;Parent=gene-AD39_RS00275;Dbxref=GenBank:WP_000259002.1;Name=WP_000259002.1;Ontology_term=GO:0019058;gbkey=CDS;go_process=viral life cycle|0019058||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310761.1;locus_tag=AD39_RS00275;product=phage head-tail joining protein;protein_id=WP_000259002.1;transl_table=11 NZ_JJLH01000084.1 RefSeq gene 2537 4129 . + . ID=gene-AD39_RS00270;Name=AD39_RS00270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00270;old_locus_tag=AD39_5115 NZ_JJLH01000084.1 Protein Homology CDS 2537 4129 . + 0 ID=cds-WP_032287694.1;Parent=gene-AD39_RS00270;Dbxref=GenBank:WP_032287694.1;Name=WP_032287694.1;Ontology_term=GO:0019068,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=virion assembly|0019068||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309134.1;locus_tag=AD39_RS00270;product=phage portal protein;protein_id=WP_032287694.1;transl_table=11 NZ_JJLH01000084.1 RefSeq gene 4119 5624 . + . ID=gene-AD39_RS00265;Name=AD39_RS00265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00265;old_locus_tag=AD39_5116 NZ_JJLH01000084.1 Protein Homology CDS 4119 5624 . + 0 ID=cds-WP_032266318.1-2;Parent=gene-AD39_RS00265;Dbxref=GenBank:WP_032266318.1;Name=WP_032266318.1;Ontology_term=GO:0006508,GO:0008233,GO:0008236;gbkey=CDS;go_function=peptidase activity|0008233||IEA,serine-type peptidase activity|0008236||IEA;go_process=proteolysis|0006508||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309135.1;locus_tag=AD39_RS00265;product=S49 family peptidase;protein_id=WP_032266318.1;transl_table=11 NZ_JJLH01000084.1 RefSeq gene 5661 6008 . + . ID=gene-AD39_RS00260;Name=AD39_RS00260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00260;old_locus_tag=AD39_5117 NZ_JJLH01000084.1 Protein Homology CDS 5661 6008 . + 0 ID=cds-WP_000256823.1-2;Parent=gene-AD39_RS00260;Dbxref=GenBank:WP_000256823.1;Name=WP_000256823.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309136.1;locus_tag=AD39_RS00260;product=head decoration protein;protein_id=WP_000256823.1;transl_table=11 NZ_JJLH01000084.1 RefSeq gene 6066 6253 . + . ID=gene-AD39_RS00255;Name=AD39_RS00255;end_range=6253,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00255;old_locus_tag=AD39_5118;partial=true NZ_JJLH01000084.1 Protein Homology CDS 6066 6253 . + 0 ID=cds-WP_000522580.1;Parent=gene-AD39_RS00255;Dbxref=GenBank:WP_000522580.1;Name=WP_000522580.1;end_range=6253,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_706633.1;locus_tag=AD39_RS00255;partial=true;product=major capsid protein;protein_id=WP_000522580.1;transl_table=11 ##sequence-region NZ_JJLH01000085.1 1 412 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000085.1 RefSeq region 1 412 . + . ID=NZ_JJLH01000085.1:1..412;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000085.1 RefSeq gene 30 412 . - . ID=gene-AD39_RS00250;Name=AD39_RS00250;end_range=412,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00250;old_locus_tag=AD39_5119;partial=true NZ_JJLH01000085.1 Protein Homology CDS 30 412 . - 2 ID=cds-WP_032287695.1;Parent=gene-AD39_RS00250;Dbxref=GenBank:WP_032287695.1;Name=WP_032287695.1;end_range=412,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1;locus_tag=AD39_RS00250;partial=true;product=dihydropteroate synthase;protein_id=WP_032287695.1;transl_table=11 ##sequence-region NZ_JJLH01000086.1 1 6618 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000086.1 RefSeq region 1 6618 . + . ID=NZ_JJLH01000086.1:1..6618;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000086.1 RefSeq gene 573 1682 . - . ID=gene-AD39_RS00245;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=AD39_RS00245;old_locus_tag=AD39_5120 NZ_JJLH01000086.1 Protein Homology CDS 573 1682 . - 0 ID=cds-WP_032287696.1;Parent=gene-AD39_RS00245;Dbxref=GenBank:WP_032287696.1;Name=WP_032287696.1;gbkey=CDS;gene=xerC;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003570254.1;locus_tag=AD39_RS00245;product=site-specific tyrosine recombinase XerC;protein_id=WP_032287696.1;transl_table=11 NZ_JJLH01000086.1 RefSeq gene 1883 4849 . - . ID=gene-AD39_RS00240;Name=AD39_RS00240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00240;old_locus_tag=AD39_5121 NZ_JJLH01000086.1 Protein Homology CDS 1883 4849 . - 0 ID=cds-WP_077757166.1;Parent=gene-AD39_RS00240;Dbxref=GenBank:WP_077757166.1;Name=WP_077757166.1;Ontology_term=GO:0006260,GO:0003677,GO:0003899,GO:0008270;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA,zinc ion binding|0008270||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_014542724.1;locus_tag=AD39_RS00240;product=DNA primase;protein_id=WP_077757166.1;transl_table=11 NZ_JJLH01000086.1 RefSeq gene 4964 5356 . + . ID=gene-AD39_RS00235;Name=AD39_RS00235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00235;old_locus_tag=AD39_5122 NZ_JJLH01000086.1 Protein Homology CDS 4964 5356 . + 0 ID=cds-WP_001724481.1-2;Parent=gene-AD39_RS00235;Dbxref=GenBank:WP_001724481.1;Name=WP_001724481.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006316688.1;locus_tag=AD39_RS00235;product=helix-turn-helix domain-containing protein;protein_id=WP_001724481.1;transl_table=11 NZ_JJLH01000086.1 RefSeq gene 5438 5731 . + . ID=gene-AD39_RS0125935;Name=AD39_RS0125935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125935;old_locus_tag=AD39_5123 NZ_JJLH01000086.1 Protein Homology CDS 5438 5731 . + 0 ID=cds-WP_001401851.1-2;Parent=gene-AD39_RS0125935;Dbxref=GenBank:WP_001401851.1;Name=WP_001401851.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000807559.1;locus_tag=AD39_RS0125935;product=SymE family type I addiction module toxin;protein_id=WP_001401851.1;transl_table=11 NZ_JJLH01000086.1 RefSeq gene 5778 6242 . - . ID=gene-AD39_RS00230;Name=AD39_RS00230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00230;old_locus_tag=AD39_5124 NZ_JJLH01000086.1 Protein Homology CDS 5778 6242 . - 0 ID=cds-WP_023155272.1-2;Parent=gene-AD39_RS00230;Dbxref=GenBank:WP_023155272.1;Name=WP_023155272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001401850.1;locus_tag=AD39_RS00230;product=hypothetical protein;protein_id=WP_023155272.1;transl_table=11 NZ_JJLH01000086.1 RefSeq gene 6211 6618 . - . ID=gene-AD39_RS28100;Name=AD39_RS28100;end_range=6618,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28100;partial=true NZ_JJLH01000086.1 Protein Homology CDS 6211 6618 . - 0 ID=cds-WP_032287502.1-2;Parent=gene-AD39_RS28100;Dbxref=GenBank:WP_032287502.1;Name=WP_032287502.1;end_range=6618,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001725545.1;locus_tag=AD39_RS28100;partial=true;product=HYD1 signature containing ADP-ribosyltransferase family protein;protein_id=WP_032287502.1;transl_table=11 ##sequence-region NZ_JJLH01000087.1 1 696 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000087.1 RefSeq region 1 696 . + . ID=NZ_JJLH01000087.1:1..696;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000087.1 RefSeq gene 1 365 . - . ID=gene-AD39_RS00225;Name=AD39_RS00225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00225;old_locus_tag=AD39_5125;partial=true;start_range=.,1 NZ_JJLH01000087.1 Protein Homology CDS 1 365 . - 0 ID=cds-WP_032287699.1;Parent=gene-AD39_RS00225;Dbxref=GenBank:WP_032287699.1;Name=WP_032287699.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309807.1;locus_tag=AD39_RS00225;partial=true;product=DNA-methyltransferase;protein_id=WP_032287699.1;start_range=.,1;transl_table=11 NZ_JJLH01000087.1 RefSeq gene 516 695 . - . ID=gene-AD39_RS00220;Name=AD39_RS00220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00220;old_locus_tag=AD39_5126 NZ_JJLH01000087.1 Protein Homology CDS 516 695 . - 0 ID=cds-WP_001360698.1;Parent=gene-AD39_RS00220;Dbxref=GenBank:WP_001360698.1;Name=WP_001360698.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001536853.1;locus_tag=AD39_RS00220;product=hypothetical protein;protein_id=WP_001360698.1;transl_table=11 ##sequence-region NZ_JJLH01000088.1 1 394 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000088.1 RefSeq region 1 394 . + . ID=NZ_JJLH01000088.1:1..394;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 ##sequence-region NZ_JJLH01000089.1 1 4554 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000089.1 RefSeq region 1 4554 . + . ID=NZ_JJLH01000089.1:1..4554;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000089.1 RefSeq gene 1 652 . + . ID=gene-AD39_RS00215;Name=AD39_RS00215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00215;old_locus_tag=AD39_5127;partial=true;start_range=.,1 NZ_JJLH01000089.1 Protein Homology CDS 1 652 . + 1 ID=cds-WP_032287671.1-2;Parent=gene-AD39_RS00215;Dbxref=GenBank:WP_032287671.1;Name=WP_032287671.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310196.1;locus_tag=AD39_RS00215;partial=true;product=phage tail protein;protein_id=WP_032287671.1;start_range=.,1;transl_table=11 NZ_JJLH01000089.1 RefSeq gene 666 1097 . + . ID=gene-AD39_RS00210;Name=gpG;gbkey=Gene;gene=gpG;gene_biotype=protein_coding;locus_tag=AD39_RS00210;old_locus_tag=AD39_5128 NZ_JJLH01000089.1 Protein Homology CDS 666 1097 . + 0 ID=cds-WP_000479095.1-3;Parent=gene-AD39_RS00210;Dbxref=GenBank:WP_000479095.1;Name=WP_000479095.1;gbkey=CDS;gene=gpG;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310755.1;locus_tag=AD39_RS00210;product=phage tail assembly chaperone G;protein_id=WP_000479095.1;transl_table=11 NZ_JJLH01000089.1 RefSeq gene 1124 1537 . + . ID=gene-AD39_RS00205;Name=AD39_RS00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00205;old_locus_tag=AD39_5129 NZ_JJLH01000089.1 Protein Homology CDS 1124 1537 . + 0 ID=cds-WP_000533402.1-2;Parent=gene-AD39_RS00205;Dbxref=GenBank:WP_000533402.1;Name=WP_000533402.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309140.2;locus_tag=AD39_RS00205;product=phage tail assembly protein T;protein_id=WP_000533402.1;transl_table=11 NZ_JJLH01000089.1 RefSeq gene 1518 4079 . + . ID=gene-AD39_RS00200;Name=AD39_RS00200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00200;old_locus_tag=AD39_5130 NZ_JJLH01000089.1 Protein Homology CDS 1518 4079 . + 0 ID=cds-WP_032266452.1;Parent=gene-AD39_RS00200;Dbxref=GenBank:WP_032266452.1;Name=WP_032266452.1;Ontology_term=GO:0016032,GO:0005198,GO:0044423;gbkey=CDS;go_component=virion component|0044423||IEA;go_function=structural molecule activity|0005198||IEA;go_process=viral process|0016032||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309670.1;locus_tag=AD39_RS00200;product=phage tail tape measure protein;protein_id=WP_032266452.1;transl_table=11 NZ_JJLH01000089.1 RefSeq gene 4076 4405 . + . ID=gene-AD39_RS00195;Name=AD39_RS00195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00195;old_locus_tag=AD39_5131 NZ_JJLH01000089.1 Protein Homology CDS 4076 4405 . + 0 ID=cds-WP_000847402.1-4;Parent=gene-AD39_RS00195;Dbxref=GenBank:WP_000847402.1;Name=WP_000847402.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309671.1;locus_tag=AD39_RS00195;product=phage tail protein;protein_id=WP_000847402.1;transl_table=11 NZ_JJLH01000089.1 RefSeq pseudogene 4405 4554 . + . ID=gene-AD39_RS26110;Name=AD39_RS26110;end_range=4554,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS26110;old_locus_tag=AD39_5132;partial=true;pseudo=true NZ_JJLH01000089.1 Protein Homology CDS 4405 4554 . + 0 ID=cds-AD39_RS26110;Parent=gene-AD39_RS26110;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;end_range=4554,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309672.1;locus_tag=AD39_RS26110;partial=true;product=phage minor tail protein L;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000090.1 1 1714 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000090.1 RefSeq region 1 1714 . + . ID=NZ_JJLH01000090.1:1..1714;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000090.1 RefSeq gene 1 1150 . - . ID=gene-AD39_RS00190;Name=intS;gbkey=Gene;gene=intS;gene_biotype=protein_coding;locus_tag=AD39_RS00190;old_locus_tag=AD39_5133;partial=true;start_range=.,1 NZ_JJLH01000090.1 Protein Homology CDS 1 1150 . - 0 ID=cds-WP_032287586.1-2;Parent=gene-AD39_RS00190;Dbxref=GenBank:WP_032287586.1;Name=WP_032287586.1;gbkey=CDS;gene=intS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_416850.1;locus_tag=AD39_RS00190;partial=true;product=prophage integrase IntS;protein_id=WP_032287586.1;start_range=.,1;transl_table=11 NZ_JJLH01000090.1 RefSeq gene 1400 1600 . - . ID=gene-AD39_RS00185;Name=torI;gbkey=Gene;gene=torI;gene_biotype=protein_coding;locus_tag=AD39_RS00185;old_locus_tag=AD39_5134 NZ_JJLH01000090.1 Protein Homology CDS 1400 1600 . - 0 ID=cds-WP_001163428.1-2;Parent=gene-AD39_RS00185;Dbxref=GenBank:WP_001163428.1;Name=WP_001163428.1;gbkey=CDS;gene=torI;inference=COORDINATES: similar to AA sequence:RefSeq:YP_588463.1;locus_tag=AD39_RS00185;product=response regulator inhibitor TorI;protein_id=WP_001163428.1;transl_table=11 ##sequence-region NZ_JJLH01000091.1 1 347 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000091.1 RefSeq region 1 347 . + . ID=NZ_JJLH01000091.1:1..347;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 ##sequence-region NZ_JJLH01000092.1 1 1211 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000092.1 RefSeq region 1 1211 . + . ID=NZ_JJLH01000092.1:1..1211;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000092.1 RefSeq gene 223 1211 . + . ID=gene-AD39_RS00180;Name=AD39_RS00180;end_range=1211,.;gbkey=Gene;gene_biotype=rRNA;locus_tag=AD39_RS00180;old_locus_tag=AD39_5135;partial=true NZ_JJLH01000092.1 cmsearch rRNA 223 1211 . + . ID=rna-AD39_RS00180;Parent=gene-AD39_RS00180;Dbxref=RFAM:RF00177;end_range=1211,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS00180;partial=true;product=16S ribosomal RNA NZ_JJLH01000092.1 cmsearch exon 223 1211 . + . ID=exon-AD39_RS00180-1;Parent=rna-AD39_RS00180;Dbxref=RFAM:RF00177;end_range=1211,.;gbkey=rRNA;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS00180;partial=true;product=16S ribosomal RNA ##sequence-region NZ_JJLH01000093.1 1 2047 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000093.1 RefSeq region 1 2047 . + . ID=NZ_JJLH01000093.1:1..2047;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000093.1 RefSeq gene 1 975 . + . ID=gene-AD39_RS00175;Name=queG;gbkey=Gene;gene=queG;gene_biotype=protein_coding;locus_tag=AD39_RS00175;old_locus_tag=AD39_5136;partial=true;start_range=.,1 NZ_JJLH01000093.1 Protein Homology CDS 1 975 . + 0 ID=cds-WP_032181275.1;Parent=gene-AD39_RS00175;Dbxref=GenBank:WP_032181275.1;Name=WP_032181275.1;Ontology_term=GO:0008033,GO:0008616,GO:0051539,GO:0052693;gbkey=CDS;gene=queG;go_function=4 iron%2C 4 sulfur cluster binding|0051539||IEA,epoxyqueuosine reductase activity|0052693||IEA;go_process=tRNA processing|0008033||IEA,queuosine biosynthetic process|0008616||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_418587.1;locus_tag=AD39_RS00175;partial=true;product=tRNA epoxyqueuosine(34) reductase QueG;protein_id=WP_032181275.1;start_range=.,1;transl_table=11 NZ_JJLH01000093.1 RefSeq gene 958 1011 . - . ID=gene-AD39_RS29345;Name=AD39_RS29345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29345 NZ_JJLH01000093.1 Protein Homology CDS 958 1011 . - 0 ID=cds-WP_010723271.1-2;Parent=gene-AD39_RS29345;Dbxref=GenBank:WP_010723271.1;Name=WP_010723271.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_002791261.1;locus_tag=AD39_RS29345;product=hypothetical protein;protein_id=WP_010723271.1;transl_table=11 NZ_JJLH01000093.1 RefSeq gene 1245 1320 . - . ID=gene-AD39_RS00170;Name=AD39_RS00170;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS00170;old_locus_tag=AD39_5137 NZ_JJLH01000093.1 tRNAscan-SE tRNA 1245 1320 . - . ID=rna-AD39_RS00170;Parent=gene-AD39_RS00170;anticodon=(pos:complement(1285..1287));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00170;product=tRNA-Gly NZ_JJLH01000093.1 tRNAscan-SE exon 1245 1320 . - . ID=exon-AD39_RS00170-1;Parent=rna-AD39_RS00170;anticodon=(pos:complement(1285..1287));gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00170;product=tRNA-Gly NZ_JJLH01000093.1 RefSeq gene 1531 2046 . - . ID=gene-AD39_RS00165;Name=orn;gbkey=Gene;gene=orn;gene_biotype=protein_coding;locus_tag=AD39_RS00165;old_locus_tag=AD39_5138 NZ_JJLH01000093.1 Protein Homology CDS 1531 2046 . - 0 ID=cds-WP_032198630.1;Parent=gene-AD39_RS00165;Dbxref=GenBank:WP_032198630.1;Name=WP_032198630.1;Ontology_term=GO:0000175,GO:0003676;gbkey=CDS;gene=orn;go_function=3'-5'-RNA exonuclease activity|0000175||IEA,nucleic acid binding|0003676||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_020882950.1;locus_tag=AD39_RS00165;product=oligoribonuclease;protein_id=WP_032198630.1;transl_table=11 ##sequence-region NZ_JJLH01000094.1 1 2477 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000094.1 RefSeq region 1 2477 . + . ID=NZ_JJLH01000094.1:1..2477;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000094.1 RefSeq gene 300 629 . + . ID=gene-AD39_RS28105;Name=AD39_RS28105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS28105 NZ_JJLH01000094.1 GeneMarkS-2+ CDS 300 629 . + 0 ID=cds-WP_001725552.1-2;Parent=gene-AD39_RS28105;Dbxref=GenBank:WP_001725552.1;Name=WP_001725552.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS28105;product=hypothetical protein;protein_id=WP_001725552.1;transl_table=11 NZ_JJLH01000094.1 RefSeq gene 629 1006 . + . ID=gene-AD39_RS00160;Name=AD39_RS00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00160;old_locus_tag=AD39_5139 NZ_JJLH01000094.1 Protein Homology CDS 629 1006 . + 0 ID=cds-WP_024170874.1-2;Parent=gene-AD39_RS00160;Dbxref=GenBank:WP_024170874.1;Name=WP_024170874.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016233854.1;locus_tag=AD39_RS00160;product=hypothetical protein;protein_id=WP_024170874.1;transl_table=11 NZ_JJLH01000094.1 RefSeq gene 1071 1364 . - . ID=gene-AD39_RS00155;Name=AD39_RS00155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00155;old_locus_tag=AD39_5140 NZ_JJLH01000094.1 Protein Homology CDS 1071 1364 . - 0 ID=cds-WP_001401945.1;Parent=gene-AD39_RS00155;Dbxref=GenBank:WP_001401945.1;Name=WP_001401945.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001401945.1;locus_tag=AD39_RS00155;product=SymE family type I addiction module toxin;protein_id=WP_001401945.1;transl_table=11 NZ_JJLH01000094.1 RefSeq gene 1439 1837 . - . ID=gene-AD39_RS00150;Name=AD39_RS00150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00150;old_locus_tag=AD39_5141 NZ_JJLH01000094.1 Protein Homology CDS 1439 1837 . - 0 ID=cds-WP_001401944.1-2;Parent=gene-AD39_RS00150;Dbxref=GenBank:WP_001401944.1;Name=WP_001401944.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001401944.1;locus_tag=AD39_RS00150;product=helix-turn-helix domain-containing protein;protein_id=WP_001401944.1;transl_table=11 NZ_JJLH01000094.1 RefSeq gene 1935 2477 . + . ID=gene-AD39_RS00145;Name=AD39_RS00145;end_range=2477,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00145;old_locus_tag=AD39_5142;partial=true NZ_JJLH01000094.1 Protein Homology CDS 1935 2477 . + 0 ID=cds-WP_032287703.1;Parent=gene-AD39_RS00145;Dbxref=GenBank:WP_032287703.1;Name=WP_032287703.1;Ontology_term=GO:0006260,GO:0003677,GO:0003899,GO:0008270;end_range=2477,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA,zinc ion binding|0008270||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001755635.1;locus_tag=AD39_RS00145;partial=true;product=CHC2 zinc finger domain-containing protein;protein_id=WP_032287703.1;transl_table=11 ##sequence-region NZ_JJLH01000095.1 1 308 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000095.1 RefSeq region 1 308 . + . ID=NZ_JJLH01000095.1:1..308;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000095.1 RefSeq pseudogene 23 308 . - . ID=gene-AD39_RS29600;Name=AD39_RS29600;end_range=308,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29600;partial=true;pseudo=true NZ_JJLH01000095.1 GeneMarkS-2+ CDS 23 308 . - 1 ID=cds-AD39_RS29600;Parent=gene-AD39_RS29600;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=308,.;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS29600;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000096.1 1 7551 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000096.1 RefSeq region 1 7551 . + . ID=NZ_JJLH01000096.1:1..7551;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000096.1 RefSeq gene 1 231 . - . ID=gene-AD39_RS00140;Name=AD39_RS00140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00140;old_locus_tag=AD39_5144;partial=true;start_range=.,1 NZ_JJLH01000096.1 Protein Homology CDS 1 231 . - 0 ID=cds-WP_032287704.1;Parent=gene-AD39_RS00140;Dbxref=GenBank:WP_032287704.1;Name=WP_032287704.1;Ontology_term=GO:0006260,GO:0003677,GO:0003899,GO:0008270;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA,zinc ion binding|0008270||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001755635.1;locus_tag=AD39_RS00140;partial=true;product=CHC2 zinc finger domain-containing protein;protein_id=WP_032287704.1;start_range=.,1;transl_table=11 NZ_JJLH01000096.1 RefSeq gene 346 738 . + . ID=gene-AD39_RS00135;Name=AD39_RS00135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00135;old_locus_tag=AD39_5145 NZ_JJLH01000096.1 Protein Homology CDS 346 738 . + 0 ID=cds-WP_001724481.1-3;Parent=gene-AD39_RS00135;Dbxref=GenBank:WP_001724481.1;Name=WP_001724481.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_006316688.1;locus_tag=AD39_RS00135;product=helix-turn-helix domain-containing protein;protein_id=WP_001724481.1;transl_table=11 NZ_JJLH01000096.1 RefSeq gene 820 1113 . + . ID=gene-AD39_RS0125945;Name=AD39_RS0125945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125945;old_locus_tag=AD39_5146 NZ_JJLH01000096.1 Protein Homology CDS 820 1113 . + 0 ID=cds-WP_001401851.1-3;Parent=gene-AD39_RS0125945;Dbxref=GenBank:WP_001401851.1;Name=WP_001401851.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000807559.1;locus_tag=AD39_RS0125945;product=SymE family type I addiction module toxin;protein_id=WP_001401851.1;transl_table=11 NZ_JJLH01000096.1 RefSeq gene 1160 1624 . - . ID=gene-AD39_RS00130;Name=AD39_RS00130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00130;old_locus_tag=AD39_5147 NZ_JJLH01000096.1 Protein Homology CDS 1160 1624 . - 0 ID=cds-WP_023155272.1-3;Parent=gene-AD39_RS00130;Dbxref=GenBank:WP_023155272.1;Name=WP_023155272.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001401850.1;locus_tag=AD39_RS00130;product=hypothetical protein;protein_id=WP_023155272.1;transl_table=11 NZ_JJLH01000096.1 RefSeq pseudogene 1593 2021 . - . ID=gene-AD39_RS28110;Name=AD39_RS28110;end_range=2021,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28110;partial=true;pseudo=true NZ_JJLH01000096.1 Protein Homology CDS 1593 2021 . - 0 ID=cds-AD39_RS28110;Parent=gene-AD39_RS28110;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;end_range=2021,.;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF026969.6;locus_tag=AD39_RS28110;partial=true;product=HYD1 signature containing ADP-ribosyltransferase family protein;pseudo=true;transl_table=11 NZ_JJLH01000096.1 RefSeq gene 2096 2455 . - . ID=gene-AD39_RS00125;Name=AD39_RS00125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00125;old_locus_tag=AD39_5148 NZ_JJLH01000096.1 Protein Homology CDS 2096 2455 . - 0 ID=cds-WP_023155389.1;Parent=gene-AD39_RS00125;Dbxref=GenBank:WP_023155389.1;Name=WP_023155389.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001241528.1;locus_tag=AD39_RS00125;product=Imm8 family immunity protein;protein_id=WP_023155389.1;transl_table=11 NZ_JJLH01000096.1 RefSeq gene 2459 7090 . - . ID=gene-AD39_RS00120;Name=AD39_RS00120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00120;old_locus_tag=AD39_5149 NZ_JJLH01000096.1 Protein Homology CDS 2459 7090 . - 0 ID=cds-WP_032287705.1;Parent=gene-AD39_RS00120;Dbxref=GenBank:WP_032287705.1;Name=WP_032287705.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016242607.1;locus_tag=AD39_RS00120;product=RHS repeat-associated core domain-containing protein;protein_id=WP_032287705.1;transl_table=11 NZ_JJLH01000096.1 RefSeq gene 7109 7551 . - . ID=gene-AD39_RS00115;Name=AD39_RS00115;end_range=7551,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00115;old_locus_tag=AD39_5150;partial=true NZ_JJLH01000096.1 Protein Homology CDS 7109 7551 . - 2 ID=cds-WP_032287706.1;Parent=gene-AD39_RS00115;Dbxref=GenBank:WP_032287706.1;Name=WP_032287706.1;end_range=7551,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003570644.1;locus_tag=AD39_RS00115;partial=true;product=DcrB-related protein;protein_id=WP_032287706.1;transl_table=11 ##sequence-region NZ_JJLH01000097.1 1 1745 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000097.1 RefSeq region 1 1745 . + . ID=NZ_JJLH01000097.1:1..1745;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000097.1 RefSeq gene 1 1745 . - . ID=gene-AD39_RS00110;Name=AD39_RS00110;end_range=1745,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00110;old_locus_tag=AD39_5151;partial=true;start_range=.,1 NZ_JJLH01000097.1 Protein Homology CDS 1 1745 . - 2 ID=cds-WP_032287708.1;Parent=gene-AD39_RS00110;Dbxref=GenBank:WP_032287708.1;Name=WP_032287708.1;end_range=1745,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001755635.1;locus_tag=AD39_RS00110;partial=true;product=toprim domain-containing protein;protein_id=WP_032287708.1;start_range=.,1;transl_table=11 ##sequence-region NZ_JJLH01000098.1 1 348 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000098.1 RefSeq region 1 348 . + . ID=NZ_JJLH01000098.1:1..348;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000098.1 RefSeq pseudogene 1 103 . - . ID=gene-AD39_RS29910;Name=AD39_RS29910;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29910;old_locus_tag=AD39_5152;partial=true;pseudo=true;start_range=.,1 NZ_JJLH01000098.1 Protein Homology CDS 1 103 . - 0 ID=cds-AD39_RS29910;Parent=gene-AD39_RS29910;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_026214.1;locus_tag=AD39_RS29910;partial=true;product=GntR family transcriptional regulator YhfZ;pseudo=true;start_range=.,1;transl_table=11 ##sequence-region NZ_JJLH01000099.1 1 3104 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000099.1 RefSeq region 1 3104 . + . ID=NZ_JJLH01000099.1:1..3104;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000099.1 RefSeq gene 1 906 . + . ID=gene-AD39_RS00105;Name=AD39_RS00105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00105;old_locus_tag=AD39_5154;partial=true;start_range=.,1 NZ_JJLH01000099.1 Protein Homology CDS 1 906 . + 0 ID=cds-WP_032287709.1;Parent=gene-AD39_RS00105;Dbxref=GenBank:WP_032287709.1;Name=WP_032287709.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_309807.1;locus_tag=AD39_RS00105;partial=true;product=DNA-methyltransferase;protein_id=WP_032287709.1;start_range=.,1;transl_table=11 NZ_JJLH01000099.1 RefSeq gene 947 1022 . + . ID=gene-AD39_RS00100;Name=AD39_RS00100;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS00100;old_locus_tag=AD39_5155 NZ_JJLH01000099.1 tRNAscan-SE tRNA 947 1022 . + . ID=rna-AD39_RS00100;Parent=gene-AD39_RS00100;anticodon=(pos:980..982);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00100;product=tRNA-Ile NZ_JJLH01000099.1 tRNAscan-SE exon 947 1022 . + . ID=exon-AD39_RS00100-1;Parent=rna-AD39_RS00100;anticodon=(pos:980..982);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00100;product=tRNA-Ile NZ_JJLH01000099.1 RefSeq gene 1123 1199 . + . ID=gene-AD39_RS00095;Name=AD39_RS00095;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS00095;old_locus_tag=AD39_5156 NZ_JJLH01000099.1 tRNAscan-SE tRNA 1123 1199 . + . ID=rna-AD39_RS00095;Parent=gene-AD39_RS00095;anticodon=(pos:1157..1159);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00095;product=tRNA-Arg NZ_JJLH01000099.1 tRNAscan-SE exon 1123 1199 . + . ID=exon-AD39_RS00095-1;Parent=rna-AD39_RS00095;anticodon=(pos:1157..1159);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00095;product=tRNA-Arg NZ_JJLH01000099.1 RefSeq gene 1699 1830 . + . ID=gene-AD39_RS29350;Name=AD39_RS29350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS29350;old_locus_tag=AD39_5158 NZ_JJLH01000099.1 Protein Homology CDS 1699 1830 . + 0 ID=cds-WP_001438304.1;Parent=gene-AD39_RS29350;Dbxref=GenBank:WP_001438304.1;Name=WP_001438304.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000216624.1;locus_tag=AD39_RS29350;product=DUF3927 family protein;protein_id=WP_001438304.1;transl_table=11 NZ_JJLH01000099.1 RefSeq pseudogene 1915 2040 . - . ID=gene-AD39_RS29915;Name=AD39_RS29915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29915;partial=true;pseudo=true;start_range=.,1915 NZ_JJLH01000099.1 Protein Homology CDS 1915 2040 . - 0 ID=cds-AD39_RS29915;Parent=gene-AD39_RS29915;Note=incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_311526.1;locus_tag=AD39_RS29915;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1915;transl_table=11 NZ_JJLH01000099.1 RefSeq gene 2111 2446 . - . ID=gene-AD39_RS00085;Name=AD39_RS00085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00085;old_locus_tag=AD39_5159 NZ_JJLH01000099.1 Protein Homology CDS 2111 2446 . - 0 ID=cds-WP_000871291.1;Parent=gene-AD39_RS00085;Dbxref=GenBank:WP_000871291.1;Name=WP_000871291.1;Ontology_term=GO:0043856,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=anti-sigma factor antagonist activity|0043856||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_707425.1;locus_tag=AD39_RS00085;product=anti-adapter protein IraM;protein_id=WP_000871291.1;transl_table=11 NZ_JJLH01000099.1 RefSeq gene 2707 3104 . + . ID=gene-AD39_RS00080;Name=AD39_RS00080;end_range=3104,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00080;old_locus_tag=AD39_5161;partial=true NZ_JJLH01000099.1 Protein Homology CDS 2707 3104 . + 0 ID=cds-WP_032208755.1;Parent=gene-AD39_RS00080;Dbxref=GenBank:WP_032208755.1;Name=WP_032208755.1;end_range=3104,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:NP_310289.1;locus_tag=AD39_RS00080;partial=true;product=DUF1737 domain-containing protein;protein_id=WP_032208755.1;transl_table=11 ##sequence-region NZ_JJLH01000100.1 1 3829 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000100.1 RefSeq region 1 3829 . + . ID=NZ_JJLH01000100.1:1..3829;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000100.1 RefSeq pseudogene 60 674 . + . ID=gene-AD39_RS00075;Name=AD39_RS00075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS00075;old_locus_tag=AD39_5163;partial=true;pseudo=true;start_range=.,60 NZ_JJLH01000100.1 Protein Homology CDS 60 674 . + 0 ID=cds-AD39_RS00075;Parent=gene-AD39_RS00075;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000517129.1;locus_tag=AD39_RS00075;partial=true;product=integrase domain-containing protein;pseudo=true;start_range=.,60;transl_table=11 NZ_JJLH01000100.1 RefSeq gene 1346 1645 . - . ID=gene-AD39_RS00065;Name=AD39_RS00065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00065;old_locus_tag=AD39_5166 NZ_JJLH01000100.1 Protein Homology CDS 1346 1645 . - 0 ID=cds-WP_001402108.1;Parent=gene-AD39_RS00065;Dbxref=GenBank:WP_001402108.1;Name=WP_001402108.1;Ontology_term=GO:0006310,GO:0015074,GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;go_process=DNA recombination|0006310||IEA,DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001402108.1;locus_tag=AD39_RS00065;product=tyrosine-type recombinase/integrase;protein_id=WP_001402108.1;transl_table=11 NZ_JJLH01000100.1 RefSeq pseudogene 1704 2958 . + . ID=gene-AD39_RS28810;Name=AD39_RS28810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28810;pseudo=true NZ_JJLH01000100.1 Protein Homology CDS 1704 2958 . + 0 ID=cds-AD39_RS28810;Parent=gene-AD39_RS28810;Note=frameshifted;Ontology_term=GO:0004803;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611657.1;locus_tag=AD39_RS28810;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000100.1 RefSeq gene 2939 3433 . - . ID=gene-AD39_RS0125965;Name=AD39_RS0125965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125965;old_locus_tag=AD39_5169 NZ_JJLH01000100.1 Protein Homology CDS 2939 3433 . - 0 ID=cds-WP_223413434.1-2;Parent=gene-AD39_RS0125965;Dbxref=GenBank:WP_223413434.1;Name=WP_223413434.1;gbkey=CDS;inference=COORDINATES: protein motif:HMM:NF024750.6;locus_tag=AD39_RS0125965;product=phage integrase central domain-containing protein;protein_id=WP_223413434.1;transl_table=11 ##sequence-region NZ_JJLH01000101.1 1 327 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000101.1 RefSeq region 1 327 . + . ID=NZ_JJLH01000101.1:1..327;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000101.1 RefSeq pseudogene 1 86 . - . ID=gene-AD39_RS29355;Name=AD39_RS29355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29355;partial=true;pseudo=true;start_range=.,1 NZ_JJLH01000101.1 Protein Homology CDS 1 86 . - 0 ID=cds-AD39_RS29355;Parent=gene-AD39_RS29355;Note=incomplete%3B too short partial abutting assembly gap%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1;locus_tag=AD39_RS29355;partial=true;product=aminoglycoside O-phosphotransferase APH(3'')-Ib;pseudo=true;start_range=.,1;transl_table=11 NZ_JJLH01000101.1 RefSeq pseudogene 147 327 . - . ID=gene-AD39_RS00055;Name=AD39_RS00055;end_range=327,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS00055;old_locus_tag=AD39_5171;partial=true;pseudo=true NZ_JJLH01000101.1 Protein Homology CDS 147 327 . - 1 ID=cds-AD39_RS00055;Parent=gene-AD39_RS00055;Note=incomplete%3B too short partial abutting assembly gap%3B missing N-terminus;end_range=327,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1;locus_tag=AD39_RS00055;partial=true;product=sulfonamide-resistant dihydropteroate synthase Sul2;pseudo=true;transl_table=11 ##sequence-region NZ_JJLH01000102.1 1 327 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000102.1 RefSeq region 1 327 . + . ID=NZ_JJLH01000102.1:1..327;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 ##sequence-region NZ_JJLH01000103.1 1 987 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000103.1 RefSeq region 1 987 . + . ID=NZ_JJLH01000103.1:1..987;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000103.1 RefSeq gene 1 668 . - . ID=gene-AD39_RS00050;Name=mltA;gbkey=Gene;gene=mltA;gene_biotype=protein_coding;locus_tag=AD39_RS00050;old_locus_tag=AD39_5172;partial=true;start_range=.,1 NZ_JJLH01000103.1 Protein Homology CDS 1 668 . - 0 ID=cds-WP_032287712.1;Parent=gene-AD39_RS00050;Dbxref=GenBank:WP_032287712.1;Name=WP_032287712.1;Ontology_term=GO:0009254,GO:0004553,GO:0019867;gbkey=CDS;gene=mltA;go_component=outer membrane|0019867||IEA;go_function=hydrolase activity%2C hydrolyzing O-glycosyl compounds|0004553||IEA;go_process=peptidoglycan turnover|0009254||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_008785702.1;locus_tag=AD39_RS00050;partial=true;product=murein transglycosylase A;protein_id=WP_032287712.1;start_range=.,1;transl_table=11 NZ_JJLH01000103.1 RefSeq gene 877 953 . + . ID=gene-AD39_RS00045;Name=AD39_RS00045;gbkey=Gene;gene_biotype=tRNA;locus_tag=AD39_RS00045;old_locus_tag=AD39_5173 NZ_JJLH01000103.1 tRNAscan-SE tRNA 877 953 . + . ID=rna-AD39_RS00045;Parent=gene-AD39_RS00045;anticodon=(pos:911..913);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00045;product=tRNA-Met NZ_JJLH01000103.1 tRNAscan-SE exon 877 953 . + . ID=exon-AD39_RS00045-1;Parent=rna-AD39_RS00045;anticodon=(pos:911..913);gbkey=tRNA;inference=COORDINATES: profile:tRNAscan-SE:2.0.12;locus_tag=AD39_RS00045;product=tRNA-Met ##sequence-region NZ_JJLH01000104.1 1 6968 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000104.1 RefSeq region 1 6968 . + . ID=NZ_JJLH01000104.1:1..6968;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000104.1 RefSeq gene 1 443 . + . ID=gene-AD39_RS00040;Name=AD39_RS00040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00040;old_locus_tag=AD39_5174;partial=true;start_range=.,1 NZ_JJLH01000104.1 Protein Homology CDS 1 443 . + 2 ID=cds-WP_032287706.1-2;Parent=gene-AD39_RS00040;Dbxref=GenBank:WP_032287706.1;Name=WP_032287706.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_003570644.1;locus_tag=AD39_RS00040;partial=true;product=DcrB-related protein;protein_id=WP_032287706.1;start_range=.,1;transl_table=11 NZ_JJLH01000104.1 RefSeq gene 462 5108 . + . ID=gene-AD39_RS26120;Name=AD39_RS26120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS26120;old_locus_tag=AD39_5175 NZ_JJLH01000104.1 Protein Homology CDS 462 5108 . + 0 ID=cds-WP_248785921.1;Parent=gene-AD39_RS26120;Dbxref=GenBank:WP_248785921.1;Name=WP_248785921.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_016248471.1;locus_tag=AD39_RS26120;product=RHS repeat-associated core domain-containing protein;protein_id=WP_248785921.1;transl_table=11 NZ_JJLH01000104.1 RefSeq gene 5102 5515 . + . ID=gene-AD39_RS0125975;Name=AD39_RS0125975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125975;old_locus_tag=AD39_5176 NZ_JJLH01000104.1 GeneMarkS-2+ CDS 5102 5515 . + 0 ID=cds-WP_223413454.1;Parent=gene-AD39_RS0125975;Dbxref=GenBank:WP_223413454.1;Name=WP_223413454.1;gbkey=CDS;inference=COORDINATES: ab initio prediction:GeneMarkS-2+;locus_tag=AD39_RS0125975;product=hypothetical protein;protein_id=WP_223413454.1;transl_table=11 NZ_JJLH01000104.1 RefSeq gene 5562 5855 . - . ID=gene-AD39_RS0125980;Name=AD39_RS0125980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS0125980;old_locus_tag=AD39_5177 NZ_JJLH01000104.1 Protein Homology CDS 5562 5855 . - 0 ID=cds-WP_000807559.1;Parent=gene-AD39_RS0125980;Dbxref=GenBank:WP_000807559.1;Name=WP_000807559.1;Ontology_term=GO:0016070,GO:0003723,GO:0016788,GO:0005737;gbkey=CDS;go_component=cytoplasm|0005737||IEA;go_function=RNA binding|0003723||IEA,hydrolase activity%2C acting on ester bonds|0016788||IEA;go_process=RNA metabolic process|0016070||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000807559.1;locus_tag=AD39_RS0125980;product=SymE family type I addiction module toxin;protein_id=WP_000807559.1;transl_table=11 NZ_JJLH01000104.1 RefSeq gene 5930 6328 . - . ID=gene-AD39_RS00035;Name=AD39_RS00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00035;old_locus_tag=AD39_5178 NZ_JJLH01000104.1 Protein Homology CDS 5930 6328 . - 0 ID=cds-WP_001401944.1-3;Parent=gene-AD39_RS00035;Dbxref=GenBank:WP_001401944.1;Name=WP_001401944.1;Ontology_term=GO:0003677;gbkey=CDS;go_function=DNA binding|0003677||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001401944.1;locus_tag=AD39_RS00035;product=helix-turn-helix domain-containing protein;protein_id=WP_001401944.1;transl_table=11 NZ_JJLH01000104.1 RefSeq gene 6426 6968 . + . ID=gene-AD39_RS00030;Name=AD39_RS00030;end_range=6968,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00030;old_locus_tag=AD39_5179;partial=true NZ_JJLH01000104.1 Protein Homology CDS 6426 6968 . + 0 ID=cds-WP_032287703.1-2;Parent=gene-AD39_RS00030;Dbxref=GenBank:WP_032287703.1;Name=WP_032287703.1;Ontology_term=GO:0006260,GO:0003677,GO:0003899,GO:0008270;end_range=6968,.;gbkey=CDS;go_function=DNA binding|0003677||IEA,DNA-directed RNA polymerase activity|0003899||IEA,zinc ion binding|0008270||IEA;go_process=DNA replication|0006260||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001755635.1;locus_tag=AD39_RS00030;partial=true;product=CHC2 zinc finger domain-containing protein;protein_id=WP_032287703.1;transl_table=11 ##sequence-region NZ_JJLH01000105.1 1 8321 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=1444274 NZ_JJLH01000105.1 RefSeq region 1 8321 . + . ID=NZ_JJLH01000105.1:1..8321;Dbxref=taxon:1444274;collection-date=2009-07-04;country=Tanzania;gbkey=Src;genome=genomic;isolation-source=stool;mol_type=genomic DNA;nat-host=Homo sapiens;strain=1-182-04_S4_C3 NZ_JJLH01000105.1 RefSeq pseudogene 143 267 . - . ID=gene-AD39_RS29920;Name=AD39_RS29920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29920;partial=true;pseudo=true;start_range=.,143 NZ_JJLH01000105.1 Protein Homology CDS 143 267 . - 0 ID=cds-AD39_RS29920;Parent=gene-AD39_RS29920;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing C-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:YP_145811.1;locus_tag=AD39_RS29920;partial=true;product=hypothetical protein;pseudo=true;start_range=.,143;transl_table=11 NZ_JJLH01000105.1 RefSeq pseudogene 345 535 . + . ID=gene-AD39_RS28135;Name=AD39_RS28135;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28135;old_locus_tag=AD39_5181;partial=true;pseudo=true;start_range=.,345 NZ_JJLH01000105.1 Protein Homology CDS 345 535 . + 0 ID=cds-AD39_RS28135;Parent=gene-AD39_RS28135;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011787828.1;locus_tag=AD39_RS28135;partial=true;product=IS630 family transposase;pseudo=true;start_range=.,345;transl_table=11 NZ_JJLH01000105.1 RefSeq gene 597 1541 . - . ID=gene-AD39_RS00025;Name=lpxM;gbkey=Gene;gene=lpxM;gene_biotype=protein_coding;gene_synonym=msbB;locus_tag=AD39_RS00025;old_locus_tag=AD39_5182 NZ_JJLH01000105.1 Protein Homology CDS 597 1541 . - 0 ID=cds-WP_011666406.1;Parent=gene-AD39_RS00025;Dbxref=GenBank:WP_011666406.1;Name=WP_011666406.1;Note=LpxM is lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase%2C an enzyme characterized in Escherichia coli and involved in biosynthesis of the form of lipid A found in that species and some closely related species.;Ontology_term=GO:0009103,GO:0016747,GO:0009276,GO:0016020;gbkey=CDS;gene=lpxM;go_component=Gram-negative-bacterium-type cell wall|0009276||IEA,membrane|0016020||IEA;go_function=acyltransferase activity%2C transferring groups other than amino-acyl groups|0016747||IEA;go_process=lipopolysaccharide biosynthetic process|0009103||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858371.1;locus_tag=AD39_RS00025;product=lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase;protein_id=WP_011666406.1;transl_table=11 NZ_JJLH01000105.1 RefSeq gene 1606 2556 . - . ID=gene-AD39_RS00020;Name=virK;gbkey=Gene;gene=virK;gene_biotype=protein_coding;locus_tag=AD39_RS00020;old_locus_tag=AD39_5183 NZ_JJLH01000105.1 Protein Homology CDS 1606 2556 . - 0 ID=cds-WP_011666407.1;Parent=gene-AD39_RS00020;Dbxref=GenBank:WP_011666407.1;Name=WP_011666407.1;gbkey=CDS;gene=virK;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858370.1;locus_tag=AD39_RS00020;product=virulence factor VirK;protein_id=WP_011666407.1;transl_table=11 NZ_JJLH01000105.1 RefSeq gene 2561 3649 . - . ID=gene-AD39_RS26260;Name=capU;gbkey=Gene;gene=capU;gene_biotype=protein_coding;locus_tag=AD39_RS26260 NZ_JJLH01000105.1 Protein Homology CDS 2561 3649 . - 0 ID=cds-WP_011666408.1;Parent=gene-AD39_RS26260;Dbxref=GenBank:WP_011666408.1;Name=WP_011666408.1;gbkey=CDS;gene=capU;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858369.1;locus_tag=AD39_RS26260;product=putative hexosyltransferase CapU;protein_id=WP_011666408.1;transl_table=11 NZ_JJLH01000105.1 RefSeq gene 3652 4494 . - . ID=gene-AD39_RS00010;Name=AD39_RS00010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=AD39_RS00010;old_locus_tag=AD39_5186 NZ_JJLH01000105.1 Protein Homology CDS 3652 4494 . - 0 ID=cds-WP_170884673.1;Parent=gene-AD39_RS00010;Dbxref=GenBank:WP_170884673.1;Name=WP_170884673.1;Ontology_term=GO:0005975,GO:0016787,GO:0016810,GO:0046872;gbkey=CDS;go_function=hydrolase activity|0016787||IEA,hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds|0016810||IEA,metal ion binding|0046872||IEA;go_process=carbohydrate metabolic process|0005975||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:NP_858368.1;locus_tag=AD39_RS00010;product=polysaccharide deacetylase family protein;protein_id=WP_170884673.1;transl_table=11 NZ_JJLH01000105.1 RefSeq pseudogene 4738 5174 . - . ID=gene-AD39_RS29925;Name=AD39_RS29925;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS29925;pseudo=true NZ_JJLH01000105.1 Protein Homology CDS 4738 5174 . - 0 ID=cds-AD39_RS29925;Parent=gene-AD39_RS29925;Note=frameshifted;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_001523436.1;locus_tag=AD39_RS29925;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000105.1 RefSeq pseudogene 5174 5419 . - . ID=gene-AD39_RS0125990;Name=AD39_RS0125990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125990;pseudo=true NZ_JJLH01000105.1 Protein Homology CDS 5174 5419 . - 0 ID=cds-AD39_RS0125990;Parent=gene-AD39_RS0125990;Note=internal stop;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000343099.1;locus_tag=AD39_RS0125990;product=hypothetical protein;pseudo=true;transl_table=11 NZ_JJLH01000105.1 RefSeq pseudogene 5610 5678 . - . ID=gene-AD39_RS30235;Name=AD39_RS30235;end_range=5678,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS30235;partial=true;pseudo=true;start_range=.,5610 NZ_JJLH01000105.1 Protein Homology CDS 5610 5678 . - 0 ID=cds-AD39_RS30235;Parent=gene-AD39_RS30235;Note=incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;end_range=5678,.;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076611684.1;locus_tag=AD39_RS30235;partial=true;product=hypothetical protein;pseudo=true;start_range=.,5610;transl_table=11 NZ_JJLH01000105.1 RefSeq pseudogene 5722 6128 . - . ID=gene-AD39_RS0125995;Name=AD39_RS0125995;end_range=6128,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS0125995;partial=true;pseudo=true;start_range=.,5722 NZ_JJLH01000105.1 Protein Homology CDS 5722 6128 . - 0 ID=cds-AD39_RS0125995;Parent=gene-AD39_RS0125995;Note=frameshifted%3B incomplete%3B partial in the middle of a contig%3B missing N-terminus and C-terminus;Ontology_term=GO:0015074;end_range=6128,.;gbkey=CDS;go_process=DNA integration|0015074||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612175.1;locus_tag=AD39_RS0125995;partial=true;product=integrase core domain-containing protein;pseudo=true;start_range=.,5722;transl_table=11 NZ_JJLH01000105.1 RefSeq gene 6228 7025 . - . ID=gene-AD39_RS0126000;Name=aggR;gbkey=Gene;gene=aggR;gene_biotype=protein_coding;locus_tag=AD39_RS0126000 NZ_JJLH01000105.1 Protein Homology CDS 6228 7025 . - 0 ID=cds-WP_032283381.1;Parent=gene-AD39_RS0126000;Dbxref=GenBank:WP_032283381.1;Name=WP_032283381.1;gbkey=CDS;gene=aggR;inference=COORDINATES: similar to AA sequence:RefSeq:WP_000769457.1;locus_tag=AD39_RS0126000;product=aggregative adherence transcriptional regulator AggR;protein_id=WP_032283381.1;transl_table=11 NZ_JJLH01000105.1 RefSeq pseudogene 7551 8321 . + . ID=gene-AD39_RS28820;Name=AD39_RS28820;end_range=8321,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=AD39_RS28820;partial=true;pseudo=true NZ_JJLH01000105.1 Protein Homology CDS 7551 8321 . + 0 ID=cds-AD39_RS28820;Parent=gene-AD39_RS28820;Note=frameshifted%3B incomplete%3B missing C-terminus;Ontology_term=GO:0004803;end_range=8321,.;gbkey=CDS;go_function=transposase activity|0004803||IEA;inference=COORDINATES: similar to AA sequence:RefSeq:WP_076612086.1;locus_tag=AD39_RS28820;partial=true;product=IS3 family transposase;pseudo=true;transl_table=11 NZ_JJLH01000105.1 cmsearch sequence_feature 7831 7947 . + . ID=id-AD39_RS28820;Dbxref=RFAM:RF01497;Note=AL1L pseudoknot;gbkey=misc_feature;inference=COORDINATES: profile:INFERNAL:1.1.5;locus_tag=AD39_RS28820;pseudo=true ###